Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15507587
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 47 of 91
Found at i:7568139 original size:14 final size:14
Alignment explanation
Indices: 7568122--7568170 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
7568112 AAACTAGAAT
* *
7568122 ATAAAATGAGTAAA
1 ATAAAATAAATAAA
7568136 ATAAAATAAATAAA
1 ATAAAATAAATAAA
*
7568150 ATAAAATAATAAAAA
1 ATAAAATAA-ATAAA
7568165 ATAAAA
1 ATAAAA
7568171 GAAAATGAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
14 21 0.68
15 10 0.32
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (14 bp):
ATAAAATAAATAAA
Found at i:7568142 original size:5 final size:5
Alignment explanation
Indices: 7568132--7568181 Score: 59
Period size: 5 Copynumber: 10.0 Consensus size: 5
7568122 ATAAAATGAG
*
7568132 TAAAA TAAAA T-AAA TAAAA TAAAA TAATAA -AAAA TAAAA GAAAA TGAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAA-AA TAAAA TAAAA TAAAA T-AAAA
7568182 AAAGAAAACC
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
4 6 0.15
5 27 0.69
6 6 0.15
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.18
Consensus pattern (5 bp):
TAAAA
Found at i:7569040 original size:20 final size:20
Alignment explanation
Indices: 7569017--7569057 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
7569007 AAGAAAAAGG
7569017 AAAAAATAAAAATAAAAATA
1 AAAAAATAAAAATAAAAATA
* * *
7569037 AAAATATAATAATAATAATA
1 AAAAAATAAAAATAAAAATA
7569057 A
1 A
7569058 TTGTCATAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (20 bp):
AAAAAATAAAAATAAAAATA
Found at i:7569058 original size:6 final size:6
Alignment explanation
Indices: 7569018--7569057 Score: 53
Period size: 6 Copynumber: 6.3 Consensus size: 6
7569008 AGAAAAAGGA
*
7569018 AAAAAT AAAAAT AAAAAT AAAAAT ATAATAAT AATAAT AA
1 AAAAAT AAAAAT AAAAAT AAAAAT A-AA-AAT AAAAAT AA
7569058 TTGTCATAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
6 24 0.77
7 3 0.10
8 4 0.13
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.23
Consensus pattern (6 bp):
AAAAAT
Found at i:7570813 original size:26 final size:27
Alignment explanation
Indices: 7570764--7570871 Score: 123
Period size: 26 Copynumber: 4.1 Consensus size: 27
7570754 AATTCATAAC
* * *
7570764 AAATAAATAAAAGAAAATAATAATAGAT
1 AAAT-AATAAAAGTATATATTAATAGAT
7570792 AAAT-ATAAAAGTATATATTAATAGAT
1 AAATAATAAAAGTATATATTAATAGAT
* *
7570818 AAATAATAAAAATA-ATATTAATGGAT
1 AAATAATAAAAGTATATATTAATAGAT
* *
7570844 AACTAATAAAA-TATATATTATTAGAT
1 AAATAATAAAAGTATATATTAATAGAT
7570870 AA
1 AA
7570872 TATATATATA
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
25 2 0.03
26 56 0.80
27 8 0.11
28 4 0.06
ACGTcount: A:0.62, C:0.01, G:0.06, T:0.31
Consensus pattern (27 bp):
AAATAATAAAAGTATATATTAATAGAT
Found at i:7570863 original size:52 final size:54
Alignment explanation
Indices: 7570764--7570871 Score: 141
Period size: 52 Copynumber: 2.0 Consensus size: 54
7570754 AATTCATAAC
7570764 AAATAAATAAAAGAAAATAATAATAGATAAATATAAAAGTATATATTAATAGAT
1 AAATAAATAAAAGAAAATAATAATAGATAAATATAAAAGTATATATTAATAGAT
* * * * *
7570818 AAAT-AATAAAA-ATAATATTAATGGATAACTAATAAAA-TATATATTATTAGAT
1 AAATAAATAAAAGAAAATAATAATAGATAAAT-ATAAAAGTATATATTAATAGAT
7570870 AA
1 AA
7570872 TATATATATA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
52 31 0.65
53 13 0.27
54 4 0.08
ACGTcount: A:0.62, C:0.01, G:0.06, T:0.31
Consensus pattern (54 bp):
AAATAAATAAAAGAAAATAATAATAGATAAATATAAAAGTATATATTAATAGAT
Found at i:7570903 original size:15 final size:15
Alignment explanation
Indices: 7570885--7570916 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7570875 ATATATATAA
7570885 AATAAAAATAAAAAT
1 AATAAAAATAAAAAT
*
7570900 AATAAAACTAAAAAT
1 AATAAAAATAAAAAT
7570915 AA
1 AA
7570917 AATAGGCCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (15 bp):
AATAAAAATAAAAAT
Found at i:7571165 original size:43 final size:43
Alignment explanation
Indices: 7571113--7571308 Score: 221
Period size: 43 Copynumber: 4.5 Consensus size: 43
7571103 AATTTTGTTC
* * *
7571113 AAAGCTCCTCTAAACAAAGGCTCAACAATTTTAGAAAATAAAT
1 AAAGCTCCTCTAAACAAAGGCTCAACACTTTGAAAAAATAAAT
* *
7571156 AAAGCTCCTCTAAACAAAGGCTTAATGACTTTGAAAAAATAAAT
1 AAAGCTCCTCTAAACAAAGGCTCAA-CACTTTGAAAAAATAAAT
* * * * ** * *
7571200 AAAACTCCTCTAAATAGAGGCTTAATGCTTTGGAAAGATAAAT
1 AAAGCTCCTCTAAACAAAGGCTCAACACTTTGAAAAAATAAAT
* *
7571243 AAAGCTTCTCTAAACAGCAGGCTCAACGACTTTGAAAAAATAAAT
1 AAAGCTCCTCTAAACA-AAGGCTCAAC-ACTTTGAAAAAATAAAT
*
7571288 AAAGCTCCTTTAAACAAAGGC
1 AAAGCTCCTCTAAACAAAGGC
7571309 AATAGAACTT
Statistics
Matches: 126, Mismatches: 24, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
43 51 0.40
44 47 0.37
45 28 0.22
ACGTcount: A:0.45, C:0.18, G:0.13, T:0.24
Consensus pattern (43 bp):
AAAGCTCCTCTAAACAAAGGCTCAACACTTTGAAAAAATAAAT
Found at i:7571210 original size:44 final size:44
Alignment explanation
Indices: 7571113--7571345 Score: 235
Period size: 44 Copynumber: 5.3 Consensus size: 44
7571103 AATTTTGTTC
* * * *
7571113 AAAGCTCCTCTAAACAAAGGCTCAA-CAATTTTAGAAAATAAAT
1 AAAGCTCCTCTAAACAAAGGCTCAATGACTTTGAAAAAATAAAT
*
7571156 AAAGCTCCTCTAAACAAAGGCTTAATGACTTTGAAAAAATAAAT
1 AAAGCTCCTCTAAACAAAGGCTCAATGACTTTGAAAAAATAAAT
* * * * * *
7571200 AAAACTCCTCTAAATAGAGGCTTAATG-CTTTGGAAAGATAAAT
1 AAAGCTCCTCTAAACAAAGGCTCAATGACTTTGAAAAAATAAAT
* * *
7571243 AAAGCTTCTCTAAACAGCAGGCTCAACGACTTTGAAAAAATAAAT
1 AAAGCTCCTCTAAACA-AAGGCTCAATGACTTTGAAAAAATAAAT
*
7571288 AAAGCTCCTTTAAACAAAGG--CAATAGAACTTTTGAAGAAAATAAAT
1 AAAGCTCCTCTAAACAAAGGCTCAAT-G-AC-TTTGAA-AAAATAAAT
*
7571334 -GA-CTCCTCTAAA
1 AAAGCTCCTCTAAA
7571346 TAGAGGCAAC
Statistics
Matches: 159, Mismatches: 24, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
42 3 0.02
43 52 0.33
44 60 0.38
45 35 0.22
46 9 0.06
ACGTcount: A:0.46, C:0.17, G:0.12, T:0.24
Consensus pattern (44 bp):
AAAGCTCCTCTAAACAAAGGCTCAATGACTTTGAAAAAATAAAT
Found at i:7571348 original size:132 final size:128
Alignment explanation
Indices: 7571113--7571352 Score: 331
Period size: 132 Copynumber: 1.8 Consensus size: 128
7571103 AATTTTGTTC
* *
7571113 AAAGCTCCTCTAAACAAAGGCTCAACAATTTTAGAAAATAAATAAAGCTCCTCTAAACAAAGGCT
1 AAAGCTCCTCTAAACAAAGGCTCAACAATTTGAAAAAATAAATAAAGCTCCTCTAAACAAAGGC-
7571178 TAATGACTTTGAAAAAATAAATAAAACTCCTCTAAATAGAGGCTTAATGCTTTGGAAAGATAAAT
65 TAATGACTTTGAAAAAATAAAT-AAACTCCTCTAAATAGAGGCTTAATGCTTTGGAAAGATAAAT
* * * *
7571243 AAAGCTTCTCTAAACAGCAGGCTCAACGACTTTGAAAAAATAAATAAAGCTCCTTTAAACAAAGG
1 AAAGCTCCTCTAAACA-AAGGCTCAAC-AATTTGAAAAAATAAATAAAGCTCCTCTAAACAAAGG
*
7571308 C-AATAGAACTTTTGAAGAAAATAAAT-GACTCCTCTAAATAGAGGC
64 CTAAT-G-AC-TTTGAA-AAAATAAATAAACTCCTCTAAATAGAGGC
7571353 AACAGAACTT
Statistics
Matches: 97, Mismatches: 7, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
130 18 0.19
131 10 0.10
132 54 0.56
133 6 0.06
134 9 0.09
ACGTcount: A:0.45, C:0.17, G:0.13, T:0.24
Consensus pattern (128 bp):
AAAGCTCCTCTAAACAAAGGCTCAACAATTTGAAAAAATAAATAAAGCTCCTCTAAACAAAGGCT
AATGACTTTGAAAAAATAAATAAACTCCTCTAAATAGAGGCTTAATGCTTTGGAAAGATAAAT
Found at i:7571353 original size:44 final size:45
Alignment explanation
Indices: 7571113--7571373 Score: 171
Period size: 44 Copynumber: 6.0 Consensus size: 45
7571103 AATTTTGTTC
*
7571113 AAAGCTCCTCTAAACAAAGGCTCAAC--AA-TTTT-AGAAAATAAAT
1 AAAGCTCCTCTAAACAAAGG--CAACAGAACTTTTGAAAAAATAAAT
*
7571156 AAAGCTCCTCTAAACAAAGGCTTAA-TG-AC-TTTGAAAAAATAAAT
1 AAAGCTCCTCTAAACAAAGGC--AACAGAACTTTTGAAAAAATAAAT
* * * * * *
7571200 AAAACTCCTCTAAATAGAGGCTTAA-TG--C-TTTGGAAAGATAAAT
1 AAAGCTCCTCTAAACAAAGGC--AACAGAACTTTTGAAAAAATAAAT
* *
7571243 AAAGCTTCTCTAAACAGCAGGCTCAAC-G-AC-TTTGAAAAAATAAAT
1 AAAGCTCCTCTAAACA-AAGG--CAACAGAACTTTTGAAAAAATAAAT
* *
7571288 AAAGCTCCTTTAAACAAAGGCAATAGAACTTTTGAAGAAAATAAAT
1 AAAGCTCCTCTAAACAAAGGCAACAGAACTTTTGAA-AAAATAAAT
* * *
7571334 -GA-CTCCTCTAAATAGAGGCAACAGAAC-TTTG-AAAAATAAA
1 AAAGCTCCTCTAAACAAAGGCAACAGAACTTTTGAAAAAATAAA
7571374 ATACTCCTTG
Statistics
Matches: 182, Mismatches: 21, Indels: 32
0.77 0.09 0.14
Matches are distributed among these distances:
41 9 0.05
42 4 0.02
43 58 0.32
44 66 0.36
45 35 0.19
46 10 0.05
ACGTcount: A:0.47, C:0.16, G:0.13, T:0.24
Consensus pattern (45 bp):
AAAGCTCCTCTAAACAAAGGCAACAGAACTTTTGAAAAAATAAAT
Found at i:7571363 original size:88 final size:86
Alignment explanation
Indices: 7571117--7571373 Score: 224
Period size: 88 Copynumber: 2.9 Consensus size: 86
7571107 TTGTTCAAAG
*** * * *
7571117 CTCCTCTAAACAAAGGCTCAACAATTTTAGAAA-ATAAATAAAGCTCCTCTAAACA-AAGGCTTA
1 CTCCTCTAAACAAAGGCT-AA-TGCTTTGGAAAGATAAATAAAGCTCCTCTAAACAGCAGGC-CA
*
7571180 ATGACTTTGAAAAAATAAATAAAA
63 ACGACTTTGAAAAAATAAATAAAA
* * *
7571204 CTCCTCTAAATAGAGGCTTAATGCTTTGGAAAGATAAATAAAGCTTCTCTAAACAGCAGGCTCAA
1 CTCCTCTAAACAAAGGC-TAATGCTTTGGAAAGATAAATAAAGCTCCTCTAAACAGCAGGC-CAA
*
7571269 CGACTTTGAAAAAATAAATAAAG
64 CGACTTTGAAAAAATAAATAAAA
* * *
7571292 CTCCTTTAAACAAAGGC-AATAGAACTTTTG-AAGA-AAATAAATGACTCCTCTAAATAG-AGG-
1 CTCCTCTAAACAAAGGCTAAT-G--CTTTGGAAAGATAAATAAA-G-CTCCTCTAAACAGCAGGC
7571352 CAACAGAACTTTG-AAAAATAAA
61 CAAC-G-ACTTTGAAAAAATAAA
7571374 ATACTCCTTG
Statistics
Matches: 143, Mismatches: 17, Indels: 20
0.79 0.09 0.11
Matches are distributed among these distances:
86 14 0.10
87 56 0.39
88 57 0.40
89 16 0.11
ACGTcount: A:0.46, C:0.17, G:0.13, T:0.24
Consensus pattern (86 bp):
CTCCTCTAAACAAAGGCTAATGCTTTGGAAAGATAAATAAAGCTCCTCTAAACAGCAGGCCAACG
ACTTTGAAAAAATAAATAAAA
Found at i:7572394 original size:8 final size:8
Alignment explanation
Indices: 7572375--7572435 Score: 70
Period size: 8 Copynumber: 7.5 Consensus size: 8
7572365 TGAGTCCTCC
7572375 TTTTCA-T
1 TTTTCATT
*
7572382 TTTTCCTT
1 TTTTCATT
*
7572390 TTTTCTTTT
1 TTTTC-ATT
7572399 TCTTTCATT
1 T-TTTCATT
*
7572408 TTTTTATT
1 TTTTCATT
7572416 TTTTCATT
1 TTTTCATT
7572424 TTTTCATT
1 TTTTCATT
7572432 TTTT
1 TTTT
7572436 TTAAGTTTAG
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
7 5 0.11
8 31 0.67
9 6 0.13
10 4 0.09
ACGTcount: A:0.08, C:0.13, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTCATT
Found at i:7587089 original size:29 final size:28
Alignment explanation
Indices: 7587047--7587107 Score: 79
Period size: 29 Copynumber: 2.2 Consensus size: 28
7587037 TATACTTCCC
* * *
7587047 TTTTTT-CTTTTTTCCTTTTTTTTTTAT
1 TTTTTTCCTTATTTCCTTATTTTATTAT
7587074 TATTTTTCCTTATTTCCTTATTTTATTAT
1 T-TTTTTCCTTATTTCCTTATTTTATTAT
7587103 TTTTT
1 TTTTT
7587108 ATTAATTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
27 1 0.03
28 9 0.31
29 19 0.66
ACGTcount: A:0.10, C:0.11, G:0.00, T:0.79
Consensus pattern (28 bp):
TTTTTTCCTTATTTCCTTATTTTATTAT
Found at i:7587118 original size:29 final size:28
Alignment explanation
Indices: 7587055--7587118 Score: 65
Period size: 29 Copynumber: 2.2 Consensus size: 28
7587045 CCTTTTTTCT
* * **
7587055 TTTTTCCTTTTTTTTTTATTATTTTTCC
1 TTTTTCCTTATTTTATTATTATTTTTAA
*
7587083 TTATTTCCTTATTTTATTATTTTTTATTAA
1 TT-TTTCCTTATTTTATTATTATTT-TTAA
7587113 TTTTTC
1 TTTTTC
7587119 ATTTTTTTCC
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
28 2 0.07
29 23 0.79
30 4 0.14
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.75
Consensus pattern (28 bp):
TTTTTCCTTATTTTATTATTATTTTTAA
Found at i:7587242 original size:15 final size:15
Alignment explanation
Indices: 7587222--7587261 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
7587212 ATAAAATGAG
7587222 TAAAAT-AAAATAAAA
1 TAAAATAAAAAT-AAA
7587237 TAAAATAAAAATAAA
1 TAAAATAAAAATAAA
7587252 -AAAATAAAAA
1 TAAAATAAAAA
7587262 GAAAATGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 10 0.42
15 9 0.38
16 5 0.21
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.17
Consensus pattern (15 bp):
TAAAATAAAAATAAA
Found at i:7587261 original size:6 final size:5
Alignment explanation
Indices: 7587222--7587260 Score: 55
Period size: 5 Copynumber: 8.0 Consensus size: 5
7587212 ATAAAATGAG
7587222 TAAAA TAAAA TAAAA TAAAA TAAAA -ATAAA -AAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TA-AAA TAAAA TAAAA
7587261 AGAAAATGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 4 0.12
5 28 0.88
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
TAAAA
Found at i:7588126 original size:11 final size:11
Alignment explanation
Indices: 7588110--7588144 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
7588100 GAAAAAGGAA
7588110 AAAATAAAAAT
1 AAAATAAAAAT
7588121 AAAATAAAAAT
1 AAAATAAAAAT
* *
7588132 ATAATAATAAT
1 AAAATAAAAAT
7588143 AA
1 AA
7588145 TAATTGTCAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:7589953 original size:54 final size:54
Alignment explanation
Indices: 7589855--7589989 Score: 148
Period size: 54 Copynumber: 2.4 Consensus size: 54
7589845 AATTCATAAC
7589855 AAATAAATAAAAGAA-AATAATAATAGATAAATATAAAAAGTATATATTAATAGAT
1 AAAT-AATAAAA-AATAATAATAATAGATAAATATAAAAAGTATATATTAATAGAT
* * * *
7589910 AAATAATAAAAAATAATATTAATGGATAACTAATAAAAA-TATATATTATTAGAT
1 AAATAATAAAAAATAATAATAATAGATAAAT-ATAAAAAGTATATATTAATAGAT
*
7589964 AATATATATATATAAAATAAAAATAA
1 AA-ATA-ATA-A-AAAATAATAATAA
7589990 AAATAATAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
53 2 0.03
54 37 0.54
55 14 0.21
56 3 0.04
57 1 0.01
58 11 0.16
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (54 bp):
AAATAATAAAAAATAATAATAATAGATAAATATAAAAAGTATATATTAATAGAT
Found at i:7589960 original size:30 final size:28
Alignment explanation
Indices: 7589875--7589965 Score: 125
Period size: 27 Copynumber: 3.4 Consensus size: 28
7589865 AAGAAAATAA
*
7589875 TAATAGATAAAT-ATAAAAAGTATATAT
1 TAATAGATAAATAATAAAAAATATATAT
7589902 TAATAGATAAATAATAAAAAATA-ATAT
1 TAATAGATAAATAATAAAAAATATATAT
* *
7589929 TAATGGATAACTAAT-AAAAATATATAT
1 TAATAGATAAATAATAAAAAATATATAT
*
7589956 TATTAGATAA
1 TAATAGATAA
7589966 TATATATATA
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
26 7 0.12
27 41 0.72
28 9 0.16
ACGTcount: A:0.59, C:0.01, G:0.07, T:0.33
Consensus pattern (28 bp):
TAATAGATAAATAATAAAAAATATATAT
Found at i:7589988 original size:21 final size:21
Alignment explanation
Indices: 7589941--7590009 Score: 58
Period size: 21 Copynumber: 3.5 Consensus size: 21
7589931 ATGGATAACT
*
7589941 AATAAAAATATATAT-TATTA
1 AATAAAAATATATATATATAA
*
7589961 GAT---AATATATATATATAA
1 AATAAAAATATATATATATAA
* *
7589979 AATAAAAATAAAAATA-ATAA
1 AATAAAAATATATATATATAA
7589999 AACTAAAAATA
1 AA-TAAAAATA
7590010 AAATAGGCCA
Statistics
Matches: 39, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
17 9 0.23
18 6 0.15
20 8 0.21
21 16 0.41
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.30
Consensus pattern (21 bp):
AATAAAAATATATATATATAA
Found at i:7589997 original size:15 final size:15
Alignment explanation
Indices: 7589979--7590010 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7589969 ATATATATAA
7589979 AATAAAAATAAAAAT
1 AATAAAAATAAAAAT
*
7589994 AATAAAACTAAAAAT
1 AATAAAAATAAAAAT
7590009 AA
1 AA
7590011 AATAGGCCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (15 bp):
AATAAAAATAAAAAT
Found at i:7590305 original size:44 final size:44
Alignment explanation
Indices: 7590208--7590402 Score: 241
Period size: 44 Copynumber: 4.5 Consensus size: 44
7590198 AATTTTGTTC
* * * *
7590208 AAAGCTCCTCTAAACAAAGGCTCAA-CAATTTTAGAAAATAAAT
1 AAAGCTCCTCTAAACAAAGGCTCAATGACTTTGAAAAAATAAAT
*
7590251 AAAGCTCCTCTAAACAAAGGCTTAATGACTTTGAAAAAATAAAT
1 AAAGCTCCTCTAAACAAAGGCTCAATGACTTTGAAAAAATAAAT
* * * * * *
7590295 AAAACTCCTCTAAATAGAGGCTTAATG-CTTTGGAAAGATAAAT
1 AAAGCTCCTCTAAACAAAGGCTCAATGACTTTGAAAAAATAAAT
* * *
7590338 AAAGCTTCTCTAAACAGAGGCTCAACGACTTTGAAAAAATAAAT
1 AAAGCTCCTCTAAACAAAGGCTCAATGACTTTGAAAAAATAAAT
*
7590382 AAAGCTCCTTTAAACAAAGGC
1 AAAGCTCCTCTAAACAAAGGC
7590403 AATAGAACTT
Statistics
Matches: 130, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
43 60 0.46
44 70 0.54
ACGTcount: A:0.46, C:0.17, G:0.13, T:0.24
Consensus pattern (44 bp):
AAAGCTCCTCTAAACAAAGGCTCAATGACTTTGAAAAAATAAAT
Found at i:7590413 original size:44 final size:44
Alignment explanation
Indices: 7590208--7590466 Score: 225
Period size: 43 Copynumber: 6.0 Consensus size: 44
7590198 AATTTTGTTC
* * *
7590208 AAAGCTCCTCTAAACAAAGGCTCAACA-A-TTTTAGAAAATAAAT
1 AAAGCTCCTCTAAACAAAGGCT-AATAGACTTTGAAAAAATAAAT
7590251 AAAGCTCCTCTAAACAAAGGCTTAAT-GACTTTGAAAAAATAAAT
1 AAAGCTCCTCTAAACAAAGGC-TAATAGACTTTGAAAAAATAAAT
* * * * *
7590295 AAAACTCCTCTAAATAGAGGCTTAAT-G-CTTTGGAAAGATAAAT
1 AAAGCTCCTCTAAACAAAGGC-TAATAGACTTTGAAAAAATAAAT
* * *
7590338 AAAGCTTCTCTAAACAGAGGCTCAA-CGACTTTGAAAAAATAAAT
1 AAAGCTCCTCTAAACAAAGGCT-AATAGACTTTGAAAAAATAAAT
* *
7590382 AAAGCTCCTTTAAACAAAGGC-AATAGAACTTTTGAGAAAATAAAT
1 AAAGCTCCTCTAAACAAAGGCTAATAG-AC-TTTGAAAAAATAAAT
* * * *
7590427 -GA-CTCCTCTAAATAGAGGC-AACAGAACTTTG-AAAAATAAA
1 AAAGCTCCTCTAAACAAAGGCTAATAG-ACTTTGAAAAAATAAA
7590467 ATACTCCTTG
Statistics
Matches: 183, Mismatches: 24, Indels: 20
0.81 0.11 0.09
Matches are distributed among these distances:
41 8 0.04
42 7 0.04
43 81 0.44
44 73 0.40
45 14 0.08
ACGTcount: A:0.47, C:0.16, G:0.13, T:0.24
Consensus pattern (44 bp):
AAAGCTCCTCTAAACAAAGGCTAATAGACTTTGAAAAAATAAAT
Found at i:7590436 original size:87 final size:90
Alignment explanation
Indices: 7590208--7590466 Score: 276
Period size: 87 Copynumber: 3.0 Consensus size: 90
7590198 AATTTTGTTC
* * *
7590208 AAAGCTCCTCTAAACAAAGGCTCA-ACAA-TTTT-AGAAAATAAATAAAGCTCCTCTAAACAAAG
1 AAAGCTCCTCTAAACAAAGGCTAATAGAACTTTTGAGAAAATAAATAAAGCTCCTCTAAACAGAG
* *
7590270 GCTTAATGACTTTGAAAAAATAAAT
66 GCTCAACGACTTTGAAAAAATAAAT
* * * *
7590295 AAAACTCCTCTAAATAGAGGCTTAAT-G--C-TTTG-GAAAGATAAATAAAGCTTCTCTAAACAG
1 AAAGCTCCTCTAAACAAAGGC-TAATAGAACTTTTGAGAAA-ATAAATAAAGCTCCTCTAAACAG
7590355 AGGCTCAACGACTTTGAAAAAATAAAT
64 AGGCTCAACGACTTTGAAAAAATAAAT
* * *
7590382 AAAGCTCCTTTAAACAAAGGC-AATAGAACTTTTGAGAAAATAAAT-GA-CTCCTCTAAATAGAG
1 AAAGCTCCTCTAAACAAAGGCTAATAGAACTTTTGAGAAAATAAATAAAGCTCCTCTAAACAGAG
7590444 G--CAACAGAACTTTG-AAAAATAAA
66 GCTCAAC-G-ACTTTGAAAAAATAAA
7590467 ATACTCCTTG
Statistics
Matches: 144, Mismatches: 16, Indels: 25
0.78 0.09 0.14
Matches are distributed among these distances:
85 7 0.05
86 18 0.12
87 101 0.70
88 4 0.03
89 10 0.07
90 4 0.03
ACGTcount: A:0.47, C:0.16, G:0.13, T:0.24
Consensus pattern (90 bp):
AAAGCTCCTCTAAACAAAGGCTAATAGAACTTTTGAGAAAATAAATAAAGCTCCTCTAAACAGAG
GCTCAACGACTTTGAAAAAATAAAT
Found at i:7591502 original size:18 final size:18
Alignment explanation
Indices: 7591474--7591531 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
7591464 CTCCTTTTCA
* *
7591474 TTTTTCCTTTTTTCTT-T
1 TTTTTCATTTTTTATTAT
7591491 TTCTTTCATTTTTTATTAT
1 TT-TTTCATTTTTTATTAT
*
7591510 TTTTTCATTTTTT-TCAT
1 TTTTTCATTTTTTATTAT
7591527 TTTTT
1 TTTTT
7591532 TTAAGTTTAG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
17 10 0.28
18 23 0.64
19 3 0.08
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTTCATTTTTTATTAT
Found at i:7591513 original size:11 final size:10
Alignment explanation
Indices: 7591481--7591533 Score: 53
Period size: 10 Copynumber: 5.6 Consensus size: 10
7591471 TCATTTTTCC
7591481 TTTTTTC-TT
1 TTTTTTCATT
7591490 TTTCTTTCA--
1 TTT-TTTCATT
7591499 TTTTTT-ATT
1 TTTTTTCATT
7591508 ATTTTTTCA-T
1 -TTTTTTCATT
7591518 TTTTTTCATT
1 TTTTTTCATT
7591528 TTTTTT
1 TTTTTT
7591534 AAGTTTAGCA
Statistics
Matches: 37, Mismatches: 0, Indels: 13
0.74 0.00 0.26
Matches are distributed among these distances:
7 1 0.03
8 3 0.08
9 14 0.38
10 18 0.49
11 1 0.03
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.81
Consensus pattern (10 bp):
TTTTTTCATT
Found at i:7591521 original size:9 final size:9
Alignment explanation
Indices: 7591481--7591532 Score: 61
Period size: 9 Copynumber: 5.7 Consensus size: 9
7591471 TCATTTTTCC
*
7591481 TTTTTTCTT
1 TTTTTTCAT
7591490 TTTCTTTCAT
1 TTT-TTTCAT
*
7591500 TTTTTATTA-
1 TTTTT-TCAT
7591509 TTTTTTCAT
1 TTTTTTCAT
7591518 TTTTTTCAT
1 TTTTTTCAT
7591527 TTTTTT
1 TTTTTT
7591533 TAAGTTTAGC
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
8 2 0.05
9 25 0.68
10 10 0.27
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTTTTCAT
Found at i:7601651 original size:179 final size:178
Alignment explanation
Indices: 7600942--7601840 Score: 704
Period size: 179 Copynumber: 5.0 Consensus size: 178
7600932 GGTGTCTACA
* *
7600942 TTTTGTTTTCTCATAAAACAATTG-CTTTTTCAATATAGAAGCTTATTCGAAATAAAATAATACT
1 TTTTGTTTTTTCATAAAACAATTGTCTTGTTC-ATAT--AAGCTTATTC-AAATAAAATAATACT
* * * * *
7601006 AATTTACTAATATTTCAAGAGTTAAT---AAGATATTTAAAAAATAAATCTATTTAT-TGAACTA
62 AATTTAATAATATTTCAA-AATTAATAACAAGAGATTTAAAAAATAAATCTATTTGTCTAAACTA
* * * **
7601067 GTTCAAATAGTTATGACTATTTGAAC-ATTCTCTATTTCAAATTATTATAACC
126 GTTCAAATAGTTAAGACTATATGAACAATTATCTATTTCAAATCGTTATAACC
* * * *
7601119 TTTGGTTTTATT-AGAAAACAATTGTCTCTGTTTATATAAGCTTATTCAGAATAAAATAATATTA
1 TTTTGTTTT-TTCATAAAACAATTGTCT-TGTTCATATAAGCTTATTCA-AATAAAATAATACTA
* * * * *
7601183 ATTTAGTAGTATTTGAAAATTAATAACTAAGAGATTTAAAAAATAAATCCATTTG-CTGAACTAG
63 ATTTAATAATATTTCAAAATTAATAAC-AAGAGATTTAAAAAATAAATCTATTTGTCTAAACTAG
* * * *
7601247 TTCAAATAGTTAAGACTATATGAATAATTATTTATTTCAAATTGTTATGACC
127 TTCAAATAGTTAAGACTATATGAACAATTATCTATTTCAAATCGTTATAACC
* * * * * * * * *
7601299 TGTTGTTTTATCATAAAGCAATTGTTTTTTGTTAATATAAGTTTGTTTGAAATAAAATAATATTA
1 TTTTGTTTTTTCATAAAACAATTG--TCTTGTTCATATAAGCTT-ATTCAAATAAAATAATACTA
* * * ** * * * * *
7601364 AGTTATTAATATTTTAGAAAATTAATTAGTAAGAGATTTAAAAAGTAAATATGTTT-ACTAAACC
63 ATTTAATAATA-TTT-CAAAATTAA-TAACAAGAGATTTAAAAAATAAATCTATTTGTCTAAACT
* * * *
7601428 A-TGTCAAATAGTT-TGACTATTTGAATAATTATCTATTTCAAATCGTTATAACT
125 AGT-TCAAATAGTTAAGACTATATGAACAATTATCTATTTCAAATCGTTATAACC
* **
7601481 TTTTGTTTTTTCATCAAACAATTGGTCTTGTTCATACT-ATTTTATTCACAATAAAATAATACTA
1 TTTTGTTTTTTCATAAAACAATT-GTCTTGTTCATA-TAAGCTTATTCA-AATAAAATAATACTA
* * * *
7601545 ATTTAATAATATTCCAAAACTTAATAACAAGAAAATT-AAAAATAAATCTAATTGTC-AAACTAG
63 ATTTAATAATATTTCAAAA-TTAATAACAAGAGATTTAAAAAATAAATCTATTTGTCTAAACTAG
* * * * *
7601608 TTCAAATCGTTAAGACTATATAAACGATTATATATTTCAAATCGTTATGACC
127 TTCAAATAGTTAAGACTATATGAACAATTATCTATTTCAAATCGTTATAACC
* * * * ** * *
7601660 TTTT-TCTTTTGTCCTAAAACAATTGTTTTATTCATACAAGCTTATTTTGATTAAAATAATTCTA
1 TTTTGT-TTTT-TCATAAAACAATTGTCTTGTTCATATAAGCTTA-TTCAAATAAAATAATACTA
* * * ** * *
7601724 ATTTAATAATATTCCAAAAATTGAT---AAGAGATTTAAAAAATAAATTTATTTACCGAATC-AG
63 ATTTAATAATATTTC-AAAATTAATAACAAGAGATTTAAAAAATAAATCTATTTGTCTAAACTAG
* * * * * *
7601785 TTTAAATGGTTAAGATTAT-TAGAACAATTATCTATTTAAAATTGTTCTAACC
127 TTCAAATAGTTAAGACTATAT-GAACAATTATCTATTTCAAATCGTTATAACC
7601837 TTTT
1 TTTT
7601841 TCTTTGTCAT
Statistics
Matches: 579, Mismatches: 109, Indels: 68
0.77 0.14 0.09
Matches are distributed among these distances:
175 7 0.01
176 46 0.08
177 80 0.14
178 37 0.06
179 159 0.27
180 65 0.11
181 72 0.12
182 63 0.11
183 48 0.08
184 2 0.00
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.41
Consensus pattern (178 bp):
TTTTGTTTTTTCATAAAACAATTGTCTTGTTCATATAAGCTTATTCAAATAAAATAATACTAATT
TAATAATATTTCAAAATTAATAACAAGAGATTTAAAAAATAAATCTATTTGTCTAAACTAGTTCA
AATAGTTAAGACTATATGAACAATTATCTATTTCAAATCGTTATAACC
Found at i:7615863 original size:18 final size:18
Alignment explanation
Indices: 7615833--7615872 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 18
7615823 TACTTCTTTT
*
7615833 TTTTTTCTTTTTTCC-TA
1 TTTTTTATTTTTTCCTTA
7615850 TTTTTTATTATTTTCCTTA
1 TTTTTTATT-TTTTCCTTA
7615869 TTTT
1 TTTT
7615873 CTTTTTTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 8 0.40
18 6 0.30
19 6 0.30
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTTTATTTTTTCCTTA
Found at i:7615878 original size:34 final size:35
Alignment explanation
Indices: 7615833--7615915 Score: 98
Period size: 34 Copynumber: 2.4 Consensus size: 35
7615823 TACTTCTTTT
* * *
7615833 TTTTTTCTTTTTTCCTATTTTTTATT-A-TTTTCC
1 TTTTTTCTTTTTTCATATTTTTCATTAATTTTTCA
*
7615866 TTATTTTCTTTTTTTATATTTTTCATTAATTTTTCA
1 TT-TTTTCTTTTTTCATATTTTTCATTAATTTTTCA
7615902 TTTTTTCCTTTTTT
1 TTTTTT-CTTTTTT
7615916 TTAAATCTCT
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
33 2 0.05
34 21 0.50
35 5 0.12
36 14 0.33
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (35 bp):
TTTTTTCTTTTTTCATATTTTTCATTAATTTTTCA
Found at i:7616016 original size:15 final size:15
Alignment explanation
Indices: 7615996--7616033 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
7615986 ATAAATGAGT
*
7615996 AAATAAATAA-AATTA
1 AAATAAA-AATAATAA
7616011 AAATAAAAATAATAA
1 AAATAAAAATAATAA
7616026 AAATAAAA
1 AAATAAAA
7616034 GAAAATGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 2 0.10
15 19 0.90
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (15 bp):
AAATAAAAATAATAA
Found at i:7616026 original size:20 final size:21
Alignment explanation
Indices: 7615996--7616038 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
7615986 ATAAATGAGT
* *
7615996 AAATAAATAAAATTAAAATAA
1 AAATAAATAAAAATAAAAGAA
7616017 AAAT-AATAAAAATAAAAGAA
1 AAATAAATAAAAATAAAAGAA
7616037 AA
1 AA
7616039 TGAAAAAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (21 bp):
AAATAAATAAAAATAAAAGAA
Found at i:7616482 original size:11 final size:10
Alignment explanation
Indices: 7616436--7616489 Score: 54
Period size: 10 Copynumber: 5.2 Consensus size: 10
7616426 CTTCAGAAAC
7616436 CCAAAAAAAT
1 CCAAAAAAAT
* *
7616446 CTAGAAAAAT
1 CCAAAAAAAT
*
7616456 CTGAAAAAAAAT
1 C--CAAAAAAAT
7616468 CCAAAAAAAT
1 CCAAAAAAAT
*
7616478 CCCAAAAAAT
1 CCAAAAAAAT
7616488 CC
1 CC
7616490 TAACCCTTCA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
10 28 0.78
12 8 0.22
ACGTcount: A:0.63, C:0.20, G:0.04, T:0.13
Consensus pattern (10 bp):
CCAAAAAAAT
Found at i:7616484 original size:22 final size:22
Alignment explanation
Indices: 7616438--7616486 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
7616428 TCAGAAACCC
* * **
7616438 AAAAAAATCTAGAAAAATCTGA
1 AAAAAAATCCAAAAAAATCCCA
7616460 AAAAAAATCCAAAAAAATCCCA
1 AAAAAAATCCAAAAAAATCCCA
7616482 AAAAA
1 AAAAA
7616487 TCCTAACCCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.69, C:0.14, G:0.04, T:0.12
Consensus pattern (22 bp):
AAAAAAATCCAAAAAAATCCCA
Found at i:7616903 original size:11 final size:11
Alignment explanation
Indices: 7616887--7616921 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
7616877 GAAAAAGGAA
7616887 AAAATAAAAAT
1 AAAATAAAAAT
7616898 AAAATAAAAAT
1 AAAATAAAAAT
* *
7616909 ATAATAATAAT
1 AAAATAAAAAT
7616920 AA
1 AA
7616922 TAATTGTCAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:7618676 original size:27 final size:27
Alignment explanation
Indices: 7618646--7618742 Score: 126
Period size: 27 Copynumber: 3.6 Consensus size: 27
7618636 AAGAAAATAA
7618646 TAATAGATAAATATAAAAAATATATAT
1 TAATAGATAAATATAAAAAATATATAT
7618673 TAATAGATAAATAATAAAAAATA-ATAT
1 TAATAGATAAAT-ATAAAAAATATATAT
* *
7618700 TAATGGATAACTA-ATAAAAATATATAT
1 TAATAGATAAATATA-AAAAATATATAT
*
7618727 TATTAGATAAAATATA
1 TAATAGAT-AAATATA
7618743 TATATATATA
Statistics
Matches: 60, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
25 1 0.02
26 8 0.13
27 36 0.60
28 14 0.23
29 1 0.02
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.33
Consensus pattern (27 bp):
TAATAGATAAATATAAAAAATATATAT
Found at i:7618719 original size:54 final size:55
Alignment explanation
Indices: 7618626--7618737 Score: 149
Period size: 54 Copynumber: 2.1 Consensus size: 55
7618616 AATTCAGAAC
7618626 AAATAAATAAAAGAAAATAATAATAGATAAATATAAAAAATATATATTAATAGAT
1 AAATAAATAAAAGAAAATAATAATAGATAAATATAAAAAATATATATTAATAGAT
* * * *
7618681 AAAT-AATAAAA-AATAATATTAATGGATAACTA-ATAAAAATATATATTATTAGAT
1 AAATAAATAAAAGAA-AATAATAATAGATAAATATA-AAAAATATATATTAATAGAT
7618735 AAA
1 AAA
7618738 ATATATATAT
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
53 3 0.06
54 44 0.86
55 4 0.08
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.29
Consensus pattern (55 bp):
AAATAAATAAAAGAAAATAATAATAGATAAATATAAAAAATATATATTAATAGAT
Found at i:7618743 original size:17 final size:17
Alignment explanation
Indices: 7618716--7618757 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
7618706 ATAACTAATA
7618716 AAAATATATATTATTAGAT
1 AAAATATATA-TA-TAGAT
*
7618735 AAAATATATATATATAT
1 AAAATATATATATAGAT
7618752 AAAATA
1 AAAATA
7618758 AAAATAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 10 0.45
18 2 0.09
19 10 0.45
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (17 bp):
AAAATATATATATAGAT
Found at i:7618776 original size:15 final size:14
Alignment explanation
Indices: 7618750--7618779 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
7618740 ATATATATAT
7618750 ATAAAATAAAAATA
1 ATAAAATAAAAATA
7618764 ATAAAACTAAAAATA
1 ATAAAA-TAAAAATA
7618779 A
1 A
7618780 AATAGGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (14 bp):
ATAAAATAAAAATA
Found at i:7619071 original size:44 final size:44
Alignment explanation
Indices: 7618976--7619168 Score: 241
Period size: 44 Copynumber: 4.5 Consensus size: 44
7618966 AATTTTGTTC
* *
7618976 AAAGCTCCTCTAAACAAAGGCTCAA-CAATTTG--AAAATAAAT
1 AAAGCTCCTCTAAACAAAGGCTCAATGACTTTGAAAAAATAAAT
*
7619017 AAAGCTCCTCTAAACAAAGGCTTAATGACTTTGAAAAAATAAAT
1 AAAGCTCCTCTAAACAAAGGCTCAATGACTTTGAAAAAATAAAT
* * * * * *
7619061 AAAACTCCTCTAAATAGAGGCTTAATG-CTTTGGAAAGATAAAT
1 AAAGCTCCTCTAAACAAAGGCTCAATGACTTTGAAAAAATAAAT
* * *
7619104 AAAGCTTCTCTAAACAGAGGCTCAACGACTTTGAAAAAATAAAT
1 AAAGCTCCTCTAAACAAAGGCTCAATGACTTTGAAAAAATAAAT
*
7619148 AAAGCTCCTTTAAACAAAGGC
1 AAAGCTCCTCTAAACAAAGGC
7619169 AAGAACTTTT
Statistics
Matches: 130, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
41 24 0.18
42 5 0.04
43 36 0.28
44 65 0.50
ACGTcount: A:0.46, C:0.18, G:0.13, T:0.24
Consensus pattern (44 bp):
AAAGCTCCTCTAAACAAAGGCTCAATGACTTTGAAAAAATAAAT
Found at i:7619106 original size:43 final size:44
Alignment explanation
Indices: 7618976--7619209 Score: 234
Period size: 44 Copynumber: 5.5 Consensus size: 44
7618966 AATTTTGTTC
* * * *
7618976 AAAGCTCCTCTAAACAAAGGCTCAA-CAATTTG--AAAATAAAT
1 AAAGCTCCTCTAAACAGAGGCTTAATGACTTTGAAAAAATAAAT
*
7619017 AAAGCTCCTCTAAACAAAGGCTTAATGACTTTGAAAAAATAAAT
1 AAAGCTCCTCTAAACAGAGGCTTAATGACTTTGAAAAAATAAAT
* * * *
7619061 AAAACTCCTCTAAATAGAGGCTTAATG-CTTTGGAAAGATAAAT
1 AAAGCTCCTCTAAACAGAGGCTTAATGACTTTGAAAAAATAAAT
* * *
7619104 AAAGCTTCTCTAAACAGAGGCTCAACGACTTTGAAAAAATAAAT
1 AAAGCTCCTCTAAACAGAGGCTTAATGACTTTGAAAAAATAAAT
* * *
7619148 AAAGCTCCTTTAAACAAAGGC--AA-GAACTTTTGAGAAAATAAAT
1 AAAGCTCCTCTAAACAGAGGCTTAATG-AC-TTTGAAAAAATAAAT
* *
7619191 -GA-CTCCTCTAAATAGAGGC
1 AAAGCTCCTCTAAACAGAGGC
7619210 AACAGAACTT
Statistics
Matches: 164, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
41 39 0.24
42 10 0.06
43 50 0.30
44 65 0.40
ACGTcount: A:0.45, C:0.17, G:0.14, T:0.24
Consensus pattern (44 bp):
AAAGCTCCTCTAAACAGAGGCTTAATGACTTTGAAAAAATAAAT
Found at i:7619189 original size:87 final size:85
Alignment explanation
Indices: 7618980--7619230 Score: 248
Period size: 87 Copynumber: 2.9 Consensus size: 85
7618970 TTGTTCAAAG
*** * * *
7618980 CTCCTCTAAACAAAGGCTCAACAATTT-GAAAATAAATAAAGCTCCTCTAAACAAAGGCTTAATG
1 CTCCTCTAAACAAAGGCT-AATGCTTTGGAAAATAAATAAAGCTCCTCTAAACAGAGGCTCAACG
7619044 ACTTTGAAAAAATAAATAAAA
65 ACTTTGAAAAAATAAATAAAA
* * *
7619065 CTCCTCTAAATAGAGGCTTAATGCTTTGGAAAGATAAATAAAGCTTCTCTAAACAGAGGCTCAAC
1 CTCCTCTAAACAAAGGC-TAATGCTTTGGAAA-ATAAATAAAGCTCCTCTAAACAGAGGCTCAAC
*
7619130 GACTTTGAAAAAATAAATAAAG
64 GACTTTGAAAAAATAAATAAAA
* * *
7619152 CTCCTTTAAACAAAGGC-AA-GAACTTTTGAGAAAATAAAT-GA-CTCCTCTAAATAGAGG--CA
1 CTCCTCTAAACAAAGGCTAATG--C-TTTG-GAAAATAAATAAAGCTCCTCTAAACAGAGGCTCA
7619211 ACAGAACTTTG-AAAAATAAA
62 AC-G-ACTTTGAAAAAATAAA
7619231 ATACTCTTGA
Statistics
Matches: 141, Mismatches: 16, Indels: 19
0.80 0.09 0.11
Matches are distributed among these distances:
83 4 0.03
84 11 0.08
85 42 0.30
86 7 0.05
87 73 0.52
88 4 0.03
ACGTcount: A:0.46, C:0.17, G:0.13, T:0.24
Consensus pattern (85 bp):
CTCCTCTAAACAAAGGCTAATGCTTTGGAAAATAAATAAAGCTCCTCTAAACAGAGGCTCAACGA
CTTTGAAAAAATAAATAAAA
Found at i:7619204 original size:128 final size:126
Alignment explanation
Indices: 7618976--7619209 Score: 330
Period size: 128 Copynumber: 1.8 Consensus size: 126
7618966 AATTTTGTTC
7618976 AAAGCTCCTCTAAACAAAGGCTCAACAATTTGAAAATAAATAAAGCTCCTCTAAACAAAGGCTTA
1 AAAGCTCCTCTAAACAAAGGCTCAACAATTTGAAAATAAATAAAGCTCCTCTAAACAAAGGC-TA
7619041 ATGACTTTGAAAAAATAAATAAAACTCCTCTAAATAGAGGCTTAATGCTTTGGAAAGATAAAT
65 ATGACTTTGAAAAAATAAAT-AAACTCCTCTAAATAGAGGCTTAATGCTTTGGAAAGATAAAT
* * * *
7619104 AAAGCTTCTCTAAACAGAGGCTCAACGACTTTGAAAAAATAAATAAAGCTCCTTTAAACAAAGGC
1 AAAGCTCCTCTAAACAAAGGCTCAAC-AATTTG--AAAATAAATAAAGCTCCTCTAAACAAAGGC
* *
7619169 -AA-GAACTTTTGAGAAAATAAAT-GACTCCTCTAAATAGAGGC
63 TAATG-AC-TTTGAAAAAATAAATAAACTCCTCTAAATAGAGGC
7619210 AACAGAACTT
Statistics
Matches: 95, Mismatches: 6, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
128 43 0.45
129 9 0.09
130 14 0.15
131 29 0.31
ACGTcount: A:0.45, C:0.17, G:0.14, T:0.24
Consensus pattern (126 bp):
AAAGCTCCTCTAAACAAAGGCTCAACAATTTGAAAATAAATAAAGCTCCTCTAAACAAAGGCTAA
TGACTTTGAAAAAATAAATAAACTCCTCTAAATAGAGGCTTAATGCTTTGGAAAGATAAAT
Found at i:7620268 original size:18 final size:18
Alignment explanation
Indices: 7620240--7620288 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
7620230 CTCCTTTTCA
* *
7620240 TTTTTCCTTTTTTCTT-T
1 TTTTTCATTTTTTATTAT
7620257 TTCTTTCATTTTTTATTAT
1 TT-TTTCATTTTTTATTAT
7620276 TTTTTCATTTTTT
1 TTTTTCATTTTTT
7620289 TTAAGTTTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 2 0.07
18 23 0.82
19 3 0.11
ACGTcount: A:0.08, C:0.12, G:0.00, T:0.80
Consensus pattern (18 bp):
TTTTTCATTTTTTATTAT
Found at i:7623291 original size:181 final size:180
Alignment explanation
Indices: 7622780--7627814 Score: 3456
Period size: 181 Copynumber: 27.9 Consensus size: 180
7622770 TTTTGTTTTG
* * * ** * * *
7622780 TCAAACAGTTATAACTATTTGAGCTTGCTCGATAAATAGATTTATTTTTTAAATATTTTGCTTAT
1 TCAAATAGTCATAACTATTTGAACTTG-TTAATAAATAGATTTATTTTTTAAATCTCTTACTTAT
* * * *
7622845 TAATTTTTAGAATATTAGTAAATTAGTAATATTTTATTTTAAATAAGTTTGTATGAA-TAGAAAC
65 TAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAACTA-AAAC
* *
7622909 AATTAG-TTTATGACAAAACAAAAGGTCATAGCT-ATTTGAAATAGATAATTGT
129 AATT-GTTTTATGACAAAACAAAAGGTCATA-ATGATTTGAAATAGATAATTAT
* * * *
7622961 TCAAATAGTTATATCTATTTGAA-TGTGTTCAGA-AAATAGATTTATTTTTTAAAT-TTTTACTG
1 TCAAATAGTCATAACTATTTGAACT-TGTT-A-ATAAATAGATTTATTTTTTAAATCTCTTACTT
* * * * *
7623023 AGTAATTTTT-GAAATATTAATAAATTTA-TTTTATTTTA-TTCGAAATAAGCTTGTATGGACCA
63 ATTAATTTTTAG-AATATTAATAAA-TTAGTATTATTTTATTTTG-AATAAGCTTGTATGAACTA
*
7623085 AAACAATTGTTTTATGACAAAACAAAATGTCATAATGATTTGAAATAGATAATTAT
125 AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * * *
7623141 TCAAACAGTTATAACTATTTGAACTTGTATAATAAATTGATTCATTTTTTAAATCTCTTACTCAT
1 TCAAATAGTCATAACTATTTGAACTTGT-TAATAAATAGATTTATTTTTTAAATCTCTTACTTAT
* * * *
7623206 TAATTTTTACAATATTAATAAATTAGTATTATTTTATTTTGAATAAGTTTATATGAACTAATACA
65 TAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAACTAAAACA
* * *
7623271 ATTGTTTTATGACAAAACAAAAGGGCAAAACGATTTGAAATAGATAATTAT
130 ATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* ** * * * * * * *
7623322 TTAAATAGTTGTGACTATTTGAACTTGTTTAGTAAACATATTTA-TTTTTAAATTTTGTTTCTTA
1 TCAAATAGTCATAACTATTTGAACTTG-TTAATAAATAGATTTATTTTTTAAA-TCTCTTACTTA
* * * * * ** *
7623386 TTAATTGTCAAAATATTAATAAATTAATATTATTTTA-ATCCAGATAAGCTTGTACGAAC-ACAA
64 TTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTTGA-ATAAGCTTGTATGAACTA-AA
* * * * * *
7623449 ACAATTATTTTATGAGAAAACTAAAA-GTCATAACGATTTAAAATAAATAATTGT
127 ACAATTGTTTTATGACAAAAC-AAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * *
7623503 GT-AAATAATCATAACTATTTGAACTTATTTGATAAATAGATTTATTTTTTAAATCTTTTACTTA
1 -TCAAATAGTCATAACTATTTGAACTT-GTTAATAAATAGATTTATTTTTTAAATCTCTTACTTA
* * **** *
7623567 TTAATTGTTCA-AATATTAATAAATTGGTATTATTTTATACAAAATAAGCTTGTATG-AGTAGAA
64 TTAATT-TTTAGAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAACTA-AA
* *** * *** *
7623630 AAAAAACTTTTATGACAAAACAAAAGGTTATAGCAATTTGAAATAGATAATTGT
127 ACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* ** * * * *
7623684 TCAAATAGTTATAACTATTTGAACTTGTTCGGTAAACAGATTCATTTTTTAAATCTATTACTCAT
1 TCAAATAGTCATAACTATTTGAACTTGTT-AATAAATAGATTTATTTTTTAAATCTCTTACTTAT
* * * * * **
7623749 TAACTTTTAGAATATTAATAAATTAGAATTATGTTA-TTTAAATTAAGCTTGCACAAAC-AAAAT
65 TAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTTGAA-TAAGCTTGTATGAACTAAAA-
* * ** * * * * *
7623812 CAATTATTTTGTGATGACACGAAAGGTTATAATGATTTG-AATCAAATAATTGT
128 CAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAAT-AGATAATTAT
* * ** * * * * *
7623865 TCAAATAGTCATAACTATTTGCA-TTGGTCAAGCCAACAGATTCAGTCTTTAAATC-CACTACTT
1 TCAAATAGTCATAACTATTTGAACTT-GTTAA-TAAATAGATTTATTTTTTAAATCTC-TTACTT
* * * *
7623928 ATTAATTTTTAGAATATTAATAAATTAGCATT-TCTTTATTCTGAATAAGATTGTATGAA-TATG
63 ATTAATTTTTAGAATATTAATAAATTAGTATTAT-TTTATTTTGAATAAGCTTGTATGAACTA-A
* * *
7623991 AACAATTGTTTTATGACAAAACAAAAGGTCATATTGATTTGAAATAAATAATTTT
126 AACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * * *
7624046 TCAAATAGTTATAACT-TATTGAACTATTTTAGTAAACATATTTATTTTTT-AAT-TC-T-CTTA
1 TCAAATAGTCATAACTAT-TTGAACT-TGTTAATAAATAGATTTATTTTTTAAATCTCTTACTTA
* * * * * * * * *
7624106 TTAATTTTCAAAATGTTAA-AAATTAGTATAATTTTATTCTAAAT-AGACTTATTTGAACAAAAA
64 TTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTTGAATAAG-CTTGTATGAACTAAAA
*
7624169 CATTTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
128 CAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * ** * * * * *
7624222 TCAAATAGTCATAATTATTTGAAC-TGATTCAGCAATCAAAATTATTTTTCAAATTTCTTACTGA
1 TCAAATAGTCATAACTATTTGAACTTG-TTAATAAAT-AGATTTATTTTTTAAATCTCTTACTTA
* * * *
7624286 TTAATTTTTCA-AATACTAATAAATTTGTTTTATTTTATTATGAATAAG-TTAGTATGAACTAAA
64 TTAATTTTT-AGAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTT-GTATGAACTAAA
* * * * *
7624349 A-AATT-TATTTGACGACAAAATAAAAAGGTCATAACGATTTGAAATAAAAAATTAT
127 ACAATTGT-TTT-ATGACAAAA-CAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * * *
7624404 TCATATAG-CTTTAACTATTTGAAC-TGATTCAATAAACAAATTTATTTTTTAAATCTCTTAGTT
1 TCAAATAGTC-ATAACTATTTGAACTTG-TT-AATAAATAGATTTATTTTTTAAATCTCTTACTT
* * * * * * *
7624467 ATTAATTTTCATAATATTATTACATTAGCATTATTATATTTTGAACAAGCTTGTATGAA-TAGAA
63 ATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAACTA-AA
* * * * * *
7624531 ATAATTGTTTTATGACAGAACAAAAGGTTATAATAATTTGAAATAAATAATTGT
127 ACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
** *
7624585 TCAAATAGTCATAACTATTTGAAC-TGATTCGGTAAATAGATTTATTTTTTAAATCTCCTACTTA
1 TCAAATAGTCATAACTATTTGAACTTG-TT-AATAAATAGATTTATTTTTTAAATCTCTTACTTA
* *** * ***
7624649 GTAATTTTT-GAAGTATTAATAAATTAGTATTATTTTATTCCAAATAGGCTTGTATGATGAAAAA
64 TTAATTTTTAGAA-TATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAACTAAAA
* ** * * **
7624713 CAATTGTTTTATGAAAAAACAAAATTTCATAATGATTTAAAATAAATAATTGC
128 CAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * * * * *
7624766 TCAAATGGCCATAATTATTTGAAC-TGATTCGATAAACT-GTTTTATGTTTTAAATCTCTAACTT
1 TCAAATAGTCATAACTATTTGAACTTG-TT-AATAAA-TAGATTTATTTTTTAAATCTCTTACTT
* * * * * * * *
7624829 ATCAATTTTTAAAATACTAATAAAGTAATATTATTTTA-TTTCAGATAAGCTTTTATGAACTGAA
63 ATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTTGA-ATAAGCTTGTATGAACTAAA
* * * *
7624893 ACAAATGTTTTATGATAAAATAAAAGGTTATAATGATCTT-AAATAGATAATTAT
127 ACAATTGTTTTATGACAAAACAAAAGGTCATAATGAT-TTGAAATAGATAATTAT
* * * * *
7624947 TCAAATAGTCATAACTATTTAAACTTGTTCAGTAAATAGATTTATTTTTTTAATTTCTTGCTTAT
1 TCAAATAGTCATAACTATTTGAACTTGTT-AATAAATAGATTTATTTTTTAAATCTCTTACTTAT
* * * * * * *
7625012 TAGTTTTTTGAATGTTCATAAATTAGTATTATTTTATTTTAAATAAGCATGTATGAACTGAAACA
65 TAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAACTAAAACA
* * *
7625077 ATTATTTTATGACTAAACAAAAGG-CTAAAATGATTTGAAATAGATAAATT-T
130 ATTGTTTTATGACAAAACAAAAGGTC-ATAATGATTTGAAATAGAT-AATTAT
** * ** * * *
7625128 TCTGATAGTC-TGAACTATTTGCA-TTGGTTTGGTAAACACATTCATTTTTTAAAT-TCTTACTT
1 TCAAATAGTCAT-AACTATTTGAACTT-G-TTAATAAATAGATTTATTTTTTAAATCTCTTACTT
* * * * * * *
7625190 ATTAATTTTTAGAATATTATTAATTTAGCAATATTTTACTTAGAATAAACTTGTATGAAC-AGAA
63 ATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAACTA-AA
* * * * ** ** *
7625254 ATAAATGTTTTAGGACAAAACAAAA-ATCATAACAATTTGTGATAGATAATTGT
127 ACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * * *
7625307 TTAAATAGTCATAACTATTTGAACTTGTTCGATAAAGAGATTTAGTTTTTAAA--T-GT-CTTAT
1 TCAAATAGTCATAACTATTTGAACTTGTT-AATAAATAGATTTATTTTTTAAATCTCTTACTTAT
* * * ** *
7625368 TAATTTTT-GAAATAGTAATAAATTCA-TATTATTTTGTTCTGAATAATTTTATATGAA-TAAAA
65 TAATTTTTAG-AATATTAATAAATT-AGTATTATTTTATTTTGAATAAGCTTGTATGAACT-AAA
* ** * * * *
7625430 AAAATTGTTTTAAAACAAAACAAAATGT-TTGAACGATTTAAAATAGATAA-TAGT
127 ACAATTGTTTTATGACAAAACAAAAGGTCAT-AATGATTTGAAATAGATAATTA-T
* * * * * * * * *
7625484 TCAAATGGACATGATTATTTGAACTTGTTCGATAAACAAAACAAATTAATTTTTTAAATCT-TCA
1 TCAAATAGTCATAACTATTTGAACTTG-T---T-AA-TAAATAGATTTATTTTTTAAATCTCT-T
* * * * *** * *
7625548 ATTTATTAATTTTTAGAATAATAACAAATTAGTATTATGTTATTCCAAATAAACATGTATGAA-T
59 ACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAACT
* * * ** * *
7625612 AGAAATAATTGTTTTATGATAAAACAAAAGATCATAACAACTTGAAATAAATAATTAT
124 A-AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * *
7625670 TCAAATAGTCATAACTATTTGAACTCGCTTGATAAATAGATTTATTTTTTAAATCTTTTACTTAT
1 TCAAATAGTCATAACTATTTGAACTTG-TTAATAAATAGATTTATTTTTTAAATCTCTTACTTAT
* * * *
7625735 TAATTTTTTAG--TATTAAT-AATTAGAATTATTTTATTTTGAATAAACTTGTTTGAA-TAGAAC
65 TAA-TTTTTAGAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAACTAAAAC
* * * * *
7625796 AAATTGGTTTATGACAAAACAAATGGTTATAATGATTTAAAATAGAACAATT-T
129 -AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAG-ATAATTAT
* *
7625849 TCAAATAATCATAACTATTTGAA-TAAAT-TTAGA-AAATAGATTTATTTTTTTAAAT-TTTTAC
1 TCAAATAGTCATAACTATTTGAACT---TGTTA-ATAAATAGATTTA-TTTTTTAAATCTCTTAC
* *
7625910 TTATTAATTTTTAGAATATTAATAAATTTA-TATTATTTTA-TTAGAAATAAGCTTGCATGAAC-
61 TTATTAATTTTTAGAATATTAATAAA-TTAGTATTATTTTATTTTG-AATAAGCTTGTATGAACT
* * * ** *
7625972 AAAACCAATTGTTTTATGACAAAA-AAAA-GTCATAA-AATTTTGAAACATATTTTTTT
124 AAAA-CAATTGTTTTATGACAAAACAAAAGGTCATAATGA-TTTGAAATAGATAATTAT
* * ** * * * *
7626028 TTAAATACTCATAACTATTTGAACTTGTTGGTAAACAAATTCATTTTTTTAATTCTCTTACTCT-
1 TCAAATAGTCATAACTATTTGAACTTGTTAATAAATAGATTTA-TTTTTTAAATCTCTTACT-TA
* ** * * *
7626092 TTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAACTGAAAT
64 TTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAACTAAAAC
* *
7626157 AATTGTTTTATTACAAAACAAAAGGTTATAATGATTTGAAATAGATAATTAT
129 AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * ** * * * *
7626209 TCAAATAATCATGACTATTTGAACTTGTTCGGTAAACATATTTATTTTTTAAAAT-TTTTAAAAT
1 TCAAATAGTCATAACTATTTGAACTTGTT-AATAAATAGATTTATTTTTT-AAATCTCTT---AC
* * * * * * * * *
7626273 TTTTTACTTATTGATTACCAAAATATTAATAAATAAATATTTTTTTAATCTAAATAAGCTTGTAT
61 TTATTA---ATT--TT--TAGAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTAT
* * * ** *
7626338 GAA-TGGAAACAATTGTTTTATGATAAAACAAAAAGTCATAACAATTTGAAATAAATAATTAT
119 GAACT-AAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * * * * *
7626400 TCAAATAGTCATAACGATTTAAACCTGTTCGATAAACAAATTTATTTTTTTAAATCTTTTACTTA
1 TCAAATAGTCATAACTATTTGAACTTGTT-AATAAATAGATTTA-TTTTTTAAATCTCTTACTTA
* * * *
7626465 TTAATTGTCTT-G-ATATCAACAAATTTGTATGATTTTA-TTTGAAATAAGCTTGTATGAA-TAG
64 TTAATT-T-TTAGAATATTAATAAATTAGTATTATTTTATTTTG-AATAAGCTTGTATGAACTA-
* ** * * * * * *
7626526 AAAAAATCATTTAATGACAAAGCAAAAGATTATAATGATTTCAAATAGATAATTGT
125 AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * * *
7626582 TCAAATAGTCATAATTA-TTGAAACTTGTTCGATAAATAGAATTATTTTTTAAATCTTTTAATTA
1 TCAAATAGTCATAACTATTTG-AACTTGTT-AATAAATAGATTTATTTTTTAAATCTCTTACTTA
* * * ** *
7626646 TTAATTTTTGGAATATTAACAACTTAGTATTATTTTATTTCAAATAAGCTTATATGAACTGAAAT
64 TTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAACT-AAA-
* * * * * *
7626711 A-AATTTTTTTATTACAAAACAAAAAGTCATAACGATTTGAAATAGAAAATTAA
127 ACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * * * * * * *
7626764 TCAAATAGTCATGACTATTTGATCTAGTTCAGTAAATATATTTATTTTTAAAATTTTTTACCTAT
1 TCAAATAGTCATAACTATTTGAACTTGTT-AATAAATAGATTTATTTTTTAAATCTCTTACTTAT
* * * * * * * *
7626829 TAATTATCAGAATATTAATAAATTAGTATTATTTTAATATGAATAAGCTTATATAAACAAAAACT
65 TAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAACTAAAACA
* * * * * * * * *
7626894 ACTATTTT-TAATAGAACAAAAGGTCATAATAATTTGAAAGAAATAATTAC
130 ATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * ** * * *
7626944 TCAAATAGTCATAACTATTTGAAATAGTTTGTTAAGT-GATTTACTTTTTAAATCTCTTACTGAT
1 TCAAATAGTCATAACTATTTGAACTTG-TTAATAAATAGATTTATTTTTTAAATCTCTTACTTAT
* * * * * * *
7627008 TAATTTTCTA-AATATTAATAAATTAGT-TTTTTTTATTTTGAACAAACTTATATTACCAAAAAC
65 TAATTTT-TAGAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAACTAAAAC
* * * *
7627071 AATTGTTTTGTGACAAAACAAAAAGTAATAACGATTTGAAATAGATAATTAT
129 AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * * ** * *
7627123 TAAAATAGTTATAATTATTTAAAC-TGATTTGGTAACA-A-AATTATTTTCTAAA--TC--ACTT
1 TCAAATAGTCATAACTATTTGAACTTG--TTAATAA-ATAGATTTATTTTTTAAATCTCTTACTT
* * * * * *
7627181 ATAAATTTTT-GAAATATTAATAAATTAG-ATTTATTCTACTCTGAATAAGCTTCTAT-AAGTTG
63 ATTAATTTTTAG-AATATTAATAAATTAGTA-TTATTTTATTTTGAATAAGCTTGTATGAA-CT-
*
7627243 AAAA-AATTGTTTTATGACAAAA-AAAAGGTCATAATGATTT-AAATTAGATAATTGT
124 AAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAA-TAGATAATTAT
* ** * * * * * *
7627298 TC--ATAGTCATAACTATTTGAACTGGTTCAGCAAACAAATGTATTTTTAAAATCTCTTAGTTAG
1 TCAAATAGTCATAACTATTTGAACTTGTT-AATAAATAGATTTATTTTTTAAATCTCTTACTTAT
** * ** ** ** * *
7627361 TAATTTTTTTAATTTTGTTAGTTTAGTACCATTTTATTTTGAATAAACTTGTATGAA-TAGAAAT
65 TAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAACTA-AAAC
* * * * * * * * *
7627425 AATTGCTTCATGACATAACAAAAGGTTATAATAATTTGAAGTATACAATTGT
129 AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * ** *
7627477 TCAAATAATCATAACTATTTGAACTGGTTTGGTAAATAGATTTATTTTTT-AATCTGTTACTTAT
1 TCAAATAGTCATAACTATTTGAACTTG-TTAATAAATAGATTTATTTTTTAAATCTCTTACTTAT
* * * * *
7627541 TAATTTTT-GAAAGATTAATAAATT-GATATTATTTTATTCTAAATAAACTTG--T--AC-GAAA
65 TAATTTTTAG-AATATTAATAAATTAG-TATTATTTTATTTTGAATAAGCTTGTATGAACTAAAA
* * * * * * *
7627599 -AATTGTTATATGACCAAACAAAACGTAACAATTATTTAAAATAGATAATTAT
128 CAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * * ** * * *
7627651 TGAAATGGACATAATTATTTGAA-TTGATTTGGTAAACATATTCATTTTTTAAA--TC--ACTTA
1 TCAAATAGTCATAACTATTTGAACTTG--TTAATAAATAGATTTATTTTTTAAATCTCTTACTTA
* * * * ** * *
7627711 TTAATTTTCAAAATTTTAAT-AACTAGTATTATTTTATTTCAAATAAGTTTGTATGAACTGAAAC
64 TTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAACTAAAAC
* *
7627775 AATTATTTTAT-AGCAGAACAAAAGGTCATAATGATTTGAA
129 AATTGTTTTATGA-CAAAACAAAAGGTCATAATGATTTGAA
7627815 TGTTCGGTAA
Statistics
Matches: 3827, Mismatches: 811, Indels: 437
0.75 0.16 0.09
Matches are distributed among these distances:
170 24 0.01
171 21 0.01
172 4 0.00
173 24 0.01
174 94 0.02
175 71 0.02
176 248 0.06
177 79 0.02
178 141 0.04
179 424 0.11
180 459 0.12
181 1450 0.38
182 485 0.13
183 20 0.01
184 7 0.00
185 3 0.00
186 115 0.03
187 7 0.00
189 8 0.00
190 1 0.00
191 132 0.03
192 10 0.00
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (180 bp):
TCAAATAGTCATAACTATTTGAACTTGTTAATAAATAGATTTATTTTTTAAATCTCTTACTTATT
AATTTTTAGAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAACTAAAACAA
TTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
Found at i:7624229 original size:16 final size:17
Alignment explanation
Indices: 7624208--7624240 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7624198 TAATGATTTG
7624208 AAATAG-ATAATTATTC
1 AAATAGCATAATTATTC
7624224 AAATAGTCATAATTATT
1 AAATAG-CATAATTATT
7624241 TGAACTGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (17 bp):
AAATAGCATAATTATTC
Found at i:7627130 original size:16 final size:17
Alignment explanation
Indices: 7627109--7627141 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7627099 TAACGATTTG
7627109 AAATAG-ATAATTATTA
1 AAATAGTATAATTATTA
7627125 AAATAGTTATAATTATT
1 AAATAG-TATAATTATT
7627142 TAAACTGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (17 bp):
AAATAGTATAATTATTA
Found at i:7629418 original size:181 final size:181
Alignment explanation
Indices: 7628189--7633581 Score: 2086
Period size: 181 Copynumber: 29.8 Consensus size: 181
7628179 CGATAAACAC
* * * * * * * * *
7628189 ACTTATTAA-TTTTAAAAAATTATTAAATTAGTATCATTTT-TAATCGAATAAACTTTTATTATC
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTAT-TTCGAATAAGCTTGTATGAAC
* * ** * * * *
7628252 -AGAAACAATTGTTTTATGACAAAAC-AAAGATTTTAATGATTTGAGATTGATAATTGTTCAAAT
65 TA-AAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAAT
* * * * ****
7628315 AATCATAACTATTTAAACTGATTCAATAAACAGATTTATTTTTTAAATCTGC-T
129 AGTCATAATTATTTGAACTGGTTTGGCAAACAGATTTATTTTTTAAATCT-CTT
* * * * *
7628368 ACTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTATTTCAAATAAG-TTGTATCATCA
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACT
* * * * * * * * *
7628432 AAAACAATTATTTTATGACAAAACAAAATGT-AGTAATGATTTGTAGTAGATAATCACTCAAATG
66 AAAATAATTGTTTTATGACAAAACAAAAGGTCA-TAACGATTTGAAATAGATAATTATTCAAATA
* * * * * **** * * *
7628496 GCCACAATTATTTTAATTGATTCAATAAATAGATTTTATTTTTTAAATTTTTT
130 GTCATAATTATTTGAACTGGTTTGGCAAACAGA-TTTATTTTTTAAATCTCTT
** * * * * *
7628549 ACTTATTAATTTGGGAAATATTAATAAATTAGTACTA-TTTA-TTCCATTTAAGCTTGTATTAAT
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGA-ATAAGCTTGTATGAAC
* * * * * * * *
7628612 TGAAACAATTATTTTATGACAAATCAAAAGATTATAA-GAATTTTAAATAGATAATTGTTCAAAT
65 TAAAATAATTGTTTTATGACAAAACAAAAGGTCATAACG-ATTTGAAATAGATAATTATTCAAAT
* * * * ** * * * *
7628676 AATAATAACTATTTGAATTTATTTGGTAAATAAATTTATTTTTTTAAATTTCTT
129 AGTCATAATTATTTGAACTGGTTTGGCAAACAGATTTA-TTTTTTAAATCTCTT
* * * * *
7628730 TCTTATTAATTTTTTG-AATGTTAATAAATTAGTATTAATTT-CTTCTAAATAAGCTTGTATGAA
1 ACTTATTAA-TTTTTGAAATATTAATAAATTAGTATTATTTTATTTC-GAATAAGCTTGTATGAA
* * * * * * * * * * * *
7628793 TTGAAACAGTTGTTTTATGACTAAGCAAAAGGTTAGAATGATTTGCAATATATAATTATTCCAAT
64 CTAAAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAAT
* ** * * * ** * * * *
7628858 AGTCTTAACCATATGAATTGATTCAGTAAACAAAGTTAGTTTTTAAATCTCTT
129 AGTCATAATTATTTGAACTGGTTTGGCAAACAGATTTATTTTTTAAATCTCTT
* ** * * * *
7628911 AATTATTAATTTTCAAAATATTATTAAATTAGTATTATTTTAATCCGAATAAGCTTATATGAAC-
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACT
* * * * * * * *
7628975 AAAACAATTATTCTATAACAAAA-GAAAGGTCATAATGATTTGAAATAGATAATAATTCATATAG
66 AAAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAG
* * * * * ** * *
7629039 TCTTAACTATTTGAACTAGTTCGACAATTAGATTT-TTTTTTAATTTTCTT
131 TCATAATTATTTGAACTGGTTTGGCAAACAGATTTATTTTTTAAATCTCTT
** * * * * * ** *
7629089 GGTTATTAAGTTTTGGAATATTATTAAATTAATATTATTTTATTTTGAATAAAATAGTATGAAC-
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACT
* * * * *
7629153 AAGCAA-AA-----CTAT-TC-AAATAAAAGGTTATAATGATTTGAAATAGATAATTATTCAAAT
66 AA--AATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAAT
* * * * * * * *
7629210 AGTTAAAACTATTTGAAATGTTTTGGCAAGCAGATTTACTTTTTAAATCTGTT
129 AGTCATAATTATTTGAACTGGTTTGGCAAACAGATTTATTTTTTAAATCTCTT
* * * * * * *
7629263 ACTGATTAATTTTTTAAATATTAATAAATTAGTATTATTTTATTTCGAACAAACTTATATTAACA
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACT
* * *
7629328 AAAATAGTTGTTTTATGACAAAACAAAAAGTAATAACGATTTGAAATAGATAATTATTCAAATAG
66 AAAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAG
* * * * *
7629393 TTATAATTATGTGAACTGGTTTGGCAAATAGAATTATTTTCTAAATCTCTT
131 TCATAATTATTTGAACTGGTTTGGCAAACAGATTTATTTTTTAAATCTCTT
* * * * * **
7629444 ACTTATAAATTTTTAAAATATTAATAAATTAGTTTTATTCTATTTCGAATAAACGTT-TATGAGT
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGC-TTGTATGAAC
* * * * ** * * *
7629508 TGAAATAATTATTTTATGACACAGCAAAAGGTCATAAAAATTT-AAATATATAATTGTTCATATA
65 TAAAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATA
* * * * * ** * *
7629572 GTCTTAGTTGTTTCAATTCATTCGGTAAAC-GAATTTATTTTTTAAATCTCTT
130 GTCATAATTATTTGAACTGGTTTGGCAAACAG-ATTTATTTTTTAAATCTCTT
* * * * *
7629624 AATTATTAATTTTT-AGAATATTACTTAATTAGTATTATTTTATTTTGAATAAGCTTGTACG-AC
1 ACTTATTAATTTTTGA-AATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAAC
* * * * * * ** *
7629687 CAGACACAATTGTTTTATGATAGAACAAAAGGTTATAATAATTTGAAATAAATAATTATTCAAAT
65 TA-AAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAAT
* * * *** *
7629752 TGTCGTAACTATTTGAACTGG-TTCAAAAACCAAATTTATTTTTTAAA--TC-T
129 AGTCATAATTATTTGAACTGGTTTGGCAAA-CAGATTTATTTTTTAAATCTCTT
* * * * * * ****
7629802 -CTTATTAATTCTTGAAAAACTAATAAATTAATATTATTTTATTTTGAATAACCTTGTATGTTGA
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACT
* * * * ** *
7629866 AAAATAATTGTTTTATAACAAAA-AAAAGGTAACAATGATTTGAAATAGATAATTGGTCAAATGG
66 AAAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAG
* * * ** *
7629930 CCATAATTATTTGAACTGATTCGATAAACTA-ATTTATTATTTAAATCTCTT
131 TCATAATTATTTGAACTGGTTTGGCAAAC-AGATTTATTTTTTAAATCTCTT
* ** * * *
7629981 ACTTATTGATTTTTGAAATATTAATAAAGGAGTATTATTTTATTTTGGATAAGCTTTTATGAACT
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACT
* * * *
7630046 AAAACAATTGTTTTATGACAAAACAAATGGTCATAA-TATTTTTAAATAGATAATTATTCAAATA
66 AAAATAATTGTTTTATGACAAAACAAAAGGTCATAACGA-TTTGAAATAGATAATTATTCAAATA
* ** * * * *
7630110 GTCATAATTATTTAAACTTATTTGGTAGACAGATTTATTTTTCCAAATCTCAT
130 GTCATAATTATTTGAACTGGTTTGGCAAACAGATTTATTTTT-TAAATCTCTT
* * * * * *
7630163 GCTTATTAATTTTTTG-AATGTTAATAAATTAGTATTATTTTATTCCAAATAAGCTCGTATAAAC
1 ACTTATTAA-TTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAAC
* * * ** * * *
7630227 TAAAACAATTATTATATGATTAAACAAAAGGTCAAAACGATTTAAAAT-GAATAATTATTCTAAT
65 TAAAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAG-ATAATTATTCAAAT
* * * * *
7630291 AGTCTTAAATATTTGAACTGGTTCGGCAAGCAAATTTATTTTTTAAA--TC-T
129 AGTCATAATTATTTGAACTGGTTTGGCAAACAGATTTATTTTTTAAATCTCTT
* *
7630341 -CTTATTAATTTTTGAAATATTATTAAATTAGTATTATTTT-TATCCGAATAAGCTCT-TATGAT
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTAT-TTCGAATAAGCT-TGTATGA-
* * * * * * * * *
7630403 A-AAAAATAGTTGTTTTATGAGAAAAC-AAAGATCATAACAATTTGAGATTGATATTTGTTCAAA
63 ACTAAAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAA
** * * ** * * ** *
7630466 TAAACATAATTATTGGAATTGGTTTGAAAAATAGCTTTAGCTTTTCAATCTCTT
128 TAGTCATAATTATTTGAACTGGTTTGGCAAACAGATTTATTTTTTAAATCTCTT
** * * * * * *
7630520 GGTTATTAATTTTTGAAATATTAAT-AATGTAGCATTATTTTATTTTGGATAAGTTTTTAGGAAC
1 ACTTATTAATTTTTGAAATATTAATAAAT-TAGTATTATTTTATTTCGAATAAGCTTGTATGAAC
* * * * * *
7630584 TGAAACAATTGTTTTATGACAAAACAAAATGTCATAACAACTTT-AAATAAATAATTGGTT-AAA
65 TAAAATAATTGTTTTATGACAAAACAAAAGGTCATAACGA-TTTGAAATAGATAATT-ATTCAAA
* ** * *
7630647 TAGTCA-AATCTATTTGAACTTGTTTGATAAACAAAATATATTTTTTTAAATCTCTT
128 TAGTCATAAT-TATTTGAACTGGTTTGGCAAAC-AGATTTA-TTTTTTAAATCTCTT
* * * * * *
7630703 ACTCATTAATTTTTCG-AATGTTAATAAATTAGTATTATTTTA-TTCTAAATAAACTTGCATAAA
1 ACTTATTAATTTTT-GAAATATTAATAAATTAGTATTATTTTATTTC-GAATAAGCTTGTATGAA
* * * * * * * * * * *
7630766 TTGAAATAATTATTTTATAACTAAACAAAAGGTTAGAATGATTTGAAATAAATAATTGTTCTAAT
64 CTAAAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAAT
** * * *
7630831 AGTTTTAATTATTTAAACTAGTTTGGCAAACACATTTATTTTTTAAATCTCTT
129 AGTCATAATTATTTGAACTGGTTTGGCAAACAGATTTATTTTTTAAATCTCTT
* * ** * ** ** *
7630884 AC----TAATTTTTG-GA-A--AAGAAA-TA--ATTATTTTATGACAAAATTAATATCATAACGA
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTC-GAA-TAAGCTTGT-ATGA
** * * * * * * * * * * *
7630938 TTTGAGATAAAT-ATTTGT-CCAAATAGTCATAA-CT-ATTTAAACTATTTTAGTAAATAAATTT
63 ACTAAAATAATTGTTTTATGACAAA-A--CAAAAGGTCA--T-AACGA-TTT-G-AAATAGA-TA
* * * ** * * * ** *
7630999 ATTTTTTAAAT-TTCTTATTAATT-TTCAAAAT-ATTAATAG-ATTC-GTATTATTTTATTTTGA
118 ATTATTCAAATAGTC--A-TAATTATTTGAACTGGTT--TGGCAAACAG-ATT-TATT-TTTT--
* *
7631059 ATAATTTTGCATGA
173 A-AA-TCT-C-T-T
** ** * * * * * * ** *
7631073 ACAAAAACAATTGTTTTATGACA-AAACTAAATGTCA-TAATGATTTGAAATAG-ATAA--TTG-
1 AC-TTATTAATT-TTTGA-AATATTAA-TAAAT-T-AGT-ATTATTTTATTTCGAATAAGCTTGT
* * * * * * * * *** * * * * *
7631132 GTCAAATGGACATGATTGTTTGAACTTGTTCGGTA-AATAGAT--TTAC-TTTTTAAATCTCCTA
59 ATGAACT-AAAATAATTGTTT-TA--TG-ACAAAACAAAAGGTCATAACGATTTGAAA-----TA
* * * * ** * * *
7631193 CCTATTAATT-TTCAAAATATTAATAAATTAGTATT--A-T-TTTATTCCAAATAAACTTGTATG
114 --GA-TAATTATTC-AAATAGTCAT-AATTA-T-TTGAACTGGTT-TGGCAAACAGA-TT-TATT
** * * **
7631253 AATAAAAACAATT
169 TTTTAAATCTCTT
** * ***** * * * * * * *
7631266 GTTTTATGACA-AAACCAAAGA-TCATAACTATTTGACATAAATAATTA-TTCAAAT-AGTCCTA
1 -ACTTATTA-ATTTTTGAAATATTAATAA--ATTAG-TAT-TAT-TTTATTTCGAATAAG--CT-
* ** * * ** ****** * * ** *
7631327 AGTATTTGAACTTGTTCAATAAATAGATTTATTTTCTAAATTTTTTGCTTATTAA-TTTTTTAAA
56 TGTA--TGAAC---TAAAAT-AATTGTTTTA-TGAC-AAAACAAAAGGTCA-TAACGATTTGAAA
* * * * * * * *** *
7631391 TA-TTAAATTGTTCAAGTAGTCTTAATCATATGAAATGGTTTGATTAACAAATTTATTTTTTAAA
112 TAGAT-AATTATTCAAATAGTCATAATTATTTGAACTGGTTTGGCAAACAGATTTATTTTTTAAA
7631455 TCTCTT
176 TCTCTT
* * *
7631461 ACTTATTAATTTTTGAAATATTATTAAATTTA-TATTATTTTAATTCGAATAAGCTTGTACGAAC
1 ACTTATTAATTTTTGAAATATTAATAAA-TTAGTATTATTTTATTTCGAATAAGCTTGTATGAAC
* * ** * * * * * *
7631525 -AAAAAAATTATTTTATGA-TGAGCAAAAGTTCAAAAC-ATTTTAAACAGATAATTGTTCAAATA
65 TAAAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATA
* * * * * * ** * *
7631587 ATCACAACTATTTAAACTTGTTCGATAAACATATTTATTTTTTAAA-AT-TT
130 GTCATAATTATTTGAACTGGTTTGGCAAACAGATTTATTTTTTAAATCTCTT
* * * * ** *
7631637 -CTTATTGATTTTT-AGAATGTTATTAAA-TAGTATTATTTTATTTTGAATAATTTTGCATGAAC
1 ACTTATTAATTTTTGA-AATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAAC
* * *
7631699 -ATAAACAATTATTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTTAAAT
65 TA-AAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAAT
* * * * * * * * * *
7631763 AGACATGACTATTTGAATTGATTTAGTAAACAAATTAACTTTTTAAA--TC--
129 AGTCATAATTATTTGAACTGGTTTGGCAAACAGATTTATTTTTTAAATCTCTT
* * *
7631812 ACTTATTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTATATGAACT
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACT
* * * *
7631877 GAAACAATTATTTTATGAC-AAA-AAAAGGTCATAACGATTTTAAATAGATAATTATT-AAGATA
66 AAAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAA-ATA
* * * * ** * * *
7631939 GTCGTAACTATTTGAATTTGTTCAGTAAATAAATTTATTTTTTTAAA-CTCTT
130 GTCATAATTATTTGAACTGGTTTGGCAAACAGATTTA-TTTTTTAAATCTCTT
* * * * * * * * *
7631991 GCTTATTAATTTTAGAAATATTAAGAAATTAGCATTATTTTATTTTGGACAAGCTTTTATAAACT
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACT
* * * * * * * *
7632056 AAAACAATTCTTTGATGTCAAAACAAAAGGTCATAACGATTTTAAATAAACAATTATTCAAGTAG
66 AAAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAG
* * * * *
7632121 TCA-AACTATTTTGAACTTGTTCGGTAAAGAGATTTATTTTTTCAAATCT-TT
131 TCATAATTA-TTTGAACTGGTTTGGCAAACAGATTTATTTTTT-AAATCTCTT
** ** * * * *
7632172 TTTTATTAATTTTTTTAATGTTAATAAATTTGCATTATTTTA-TTCTGAATAAGCTTGTAAGATA
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTC-GAATAAGCTTGTATGA-A
* * * * * * ** * * ***
7632236 -TGAAACAAATATTTT-TTACTAAACAAAAAATTCAGAATGATTTGAAATAGATAATTATTTTCA
64 CTAAAATAATTGTTTTATGACAAAAC-AAAAGGTCATAACGATTTGAAATAGATAATTATTCAAA
** * * * ** * * *
7632299 TAGTTTTAACTATTTGAATTAGTTCAGCGAATACATTTATTTTTTAAATCTCTT
128 TAGTCATAATTATTTGAACTGGTTTGGCAAACAGATTTATTTTTTAAATCTCTT
* * * * ** *
7632353 ACTTAATAATTTTTGGAATATTATTAAATTATTATTATTTT-TAACTAAATAAGCTTCG-ATG-A
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTC-GAATAAGCTT-GTATGAA
* * * * * * * * * *
7632415 TTAGAAACAATTGTTTTATGATAAAAC-AAAGATCTTAACGATTAGAGATTGATAATTGTTTAAA
64 CTA-AAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAA
* * ** * *
7632479 TAGTCATAACTATTTGATA-TGGTTCGATAAATAGATTTATTTCTTAAATCTCTT
128 TAGTCATAATTATTTGA-ACTGGTTTGGCAAACAGATTTATTTTTTAAATCTCTT
* * * * * *
7632533 ACTTATTAATTTTTGAAATATTAATCAATTAGTATTATTCTATTTCAAATAAACTTGTATGATCA
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACT
* * * * **
7632598 AAAATAATTATTTTATGACAAAACAAATGGTCATAACAATTTGAAGTAGATAATCGTTCAAAT-G
66 AAAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAG
* * * ** * * *
7632662 ATCATAATTATTTTAATTGATTCAGTAAAC-GAACTTATTTTTTAAATTTCTT
131 -TCATAATTATTTGAACTGGTTTGGCAAACAG-ATTTATTTTTTAAATCTCTT
** * ** * *
7632714 ACTTATTAATTTAGGAAATATTAATAAATTAGTATTATTTTATTTTGTCTAAGCTTTTATTAACT
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACT
* * ** * ** *
7632779 AAAACAATTGTTTTATGATAAGTCAAAAGGTTATAATAATTTTAAATAGACT-ATTATTCAAATA
66 AAAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGA-TAATTATTCAAATA
* * * * * * *
7632843 GTAATAATTATTTAAATTTGTTTAGTAAACATATTTAGTTTTTTAAATCTCTT
130 GTCATAATTATTTGAACTGGTTTGGCAAACAGATTTA-TTTTTTAAATCTCTT
* * * *
7632896 TCTTCTTAATTTTTTG-AATATTAGTAAATT-GATATTAGTTTA-TTCTGAATAAGCTTGTATGA
1 ACTTATTAA-TTTTTGAAATATTAATAAATTAG-TATTATTTTATTTC-GAATAAGCTTGTATGA
* * * * * * ** * *
7632958 ACTAAAACAGA-TGTTTTATGACTAAATAAAAGGTTAGAATGACATG-AATAGATAATTGTTCCA
63 ACTAAAATA-ATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAA
* ** ** * *
7633021 ATAGTCTTAACCATTTGAACTAATTTGGTAAACAAATTTATTTTTT-AATCTCTT
127 ATAGTCATAATTATTTGAACTGGTTTGGCAAACAGATTTATTTTTTAAATCTCTT
* * * * * * * *
7633075 ATTTATTAATTTTTGAAATATTATTAAATTAGAATTATTTAAATCCAAATAAGCTTATATGAA-T
1 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACT
* * * * * *
7633139 AAAATAGTTCTTTTATGAC-AAACAATAGGTCATAACGATTTGAAATAGATAATTGTTTATATAG
66 AAAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAG
* * * * * ** ** * *
7633203 TCCTAACTATTTGAACTAGCTCGATAATTAGATTTATTTTTT-AATTTTTT
131 TCATAATTATTTGAACTGGTTTGGCAAACAGATTTATTTTTTAAATCTCTT
** * * * * * ** *
7633253 GGGTTATTAAATTTT-AGAATATTATTGAATTAATATTATTTTATTCCGAATAAAATAGTAT-AA
1 -ACTTATTAATTTTTGA-AATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAA
* ** * * ** * * *
7633316 ATAGAACCAATTGTTTAATGACAAAATAAAAAATTATAATGATTTGAAATAGATAATAATTCAAA
64 CTA-AAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAA
* * * * ** *
7633381 TAGTCATAACTATTTGAAATGGTTTAGTAAACAGA-TTACCTTTTAAATCTTTT
128 TAGTCATAATTATTTGAACTGGTTTGGCAAACAGATTTATTTTTTAAATCTCTT
** ** * * *
7633434 ACCAATTAATTTTCT-AAATATTAATAAATTACCATTATTTTATTTTGAA-AA-CTTATATTAAC
1 ACTTATTAATTTT-TGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAAC
* * * * *
7633496 AAAAATAATT-TTTTATGACAAAACAAAAAGTAATAACAATTTGAAATAGATAATTGTTCAAATA
65 TAAAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATA
* *
7633560 GTTATAATTATTTGAATTGGTT
130 GTCATAATTATTTGAACTGGTT
7633582 CAATAAGTTA
Statistics
Matches: 3919, Mismatches: 1046, Indels: 500
0.72 0.19 0.09
Matches are distributed among these distances:
170 9 0.00
171 7 0.00
172 15 0.00
173 84 0.02
174 100 0.03
175 109 0.03
176 183 0.05
177 333 0.08
178 229 0.06
179 309 0.08
180 646 0.16
181 1123 0.29
182 387 0.10
183 135 0.03
184 8 0.00
185 2 0.00
186 2 0.00
187 5 0.00
188 1 0.00
189 5 0.00
190 8 0.00
191 14 0.00
192 11 0.00
193 8 0.00
194 21 0.01
195 18 0.00
196 12 0.00
197 22 0.01
198 11 0.00
199 14 0.00
200 26 0.01
201 19 0.00
202 14 0.00
203 10 0.00
204 1 0.00
205 18 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (181 bp):
ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACT
AAAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAG
TCATAATTATTTGAACTGGTTTGGCAAACAGATTTATTTTTTAAATCTCTT
Found at i:7630110 original size:16 final size:17
Alignment explanation
Indices: 7630089--7630121 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7630079 TAATATTTTT
7630089 AAATAG-ATAATTATTC
1 AAATAGCATAATTATTC
7630105 AAATAGTCATAATTATT
1 AAATAG-CATAATTATT
7630122 TAAACTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (17 bp):
AAATAGCATAATTATTC
Found at i:7630116 original size:18 final size:18
Alignment explanation
Indices: 7630069--7630121 Score: 56
Period size: 16 Copynumber: 3.0 Consensus size: 18
7630059 TATGACAAAA
* *
7630069 CAAATGGTCATAATATTTT
1 CAAATAGTCATAAT-TATT
*
7630088 TAAATAG--ATAATTATT
1 CAAATAGTCATAATTATT
7630104 CAAATAGTCATAATTATT
1 CAAATAGTCATAATTATT
7630122 TAAACTTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
16 9 0.32
17 5 0.18
18 9 0.32
19 5 0.18
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.42
Consensus pattern (18 bp):
CAAATAGTCATAATTATT
Found at i:7630327 original size:539 final size:533
Alignment explanation
Indices: 7627829--7630899 Score: 1874
Period size: 539 Copynumber: 5.7 Consensus size: 533
7627819 CGGTAAACAA
* * * *
7627829 ATTTATTTTTAAA-CTCTTAGCTTATCTAATTTTGGAAGTGATTAAAAAATTAGTATTATTTTA-
1 ATTTATTTTTAAATCTCTTA-CTTAT-TAATTTTTGAAAT-ATTAATAAAGTAGTATTATTTTAT
* * * *
7627892 TTT-GATAAGCTTTTATGAACTTG-AACAATTGTTTTATGTCAAAACAAAAGGT-TTAATAATTT
63 TTTGGATAAGCTTTTATGAAC-TGAAACAATTGTTTTATGACAAAACAAATGGTCATAA-AAATT
* * ** * * * ** * *
7627954 TAGAAAAAATAA-TATTCAAATAGAAAACAACTATTTTAAC-T-TTCAGTAGATAGATTTATTTT
126 TA-AATAAATAATTGTTCAAATAG-TCATAATTATTTAAACTTATTTGGTAAACAGATTTATTTT
* * * *
7628016 GTGTCAAAAT-T-TTGCTTATTTAATTTTT-TAATG-TAATAAATTTG-ACTT-TTTTATTCTCG
189 -T-T--AAATCTCTTACTTA-TTAATTTTTAGAATGTTAATAAATTAGTA-TTATTTTATTCT-A
** * * * * *
7628075 AATAAGCTTGTA-AGATGTGAAACAAATATTTTATGATTAAACAAGAGGTTAGAATGATTTAAAA
247 AATAAGCTTGTATA-AACTAAAACAATTATTTTATGA-TAAACAAAAGGTTAAAATGATTTGAAA
* * * * *
7628139 TAGATAATTATTCTAATAGTTTTAACTATTTGAAC----T----AAGTC-GA--TA------AAC
310 TAAATAATTATTCAAATAGTCTTAAATATTTGAACTGGTTCGGCAAG-CAAATTTATTTTTTAA-
* * * * *
7628187 A-CACTTATTAA-TTTTAAAAAATTATTAAATTAGTATCATTTT-TAATCGAATAAACTTTTAT-
373 ATCTCTTATTAATTTTTGAAAAATTAATAAATTAGTATTATTTTAT-TTCGAATAAAC-TTTATG
* * * * * * ** * * *
7628248 TATCAGAAACAATTGTTTTATGACAAAACAAAGATTTTAATGATTTGAGATTGATAATTGTTCAA
436 T-TAAAAAATAGTTGTTTTATGACAAAAAAAAGGTAATAACGATTTGAAATAGATAATTGTTCAA
* * * ** *
7628313 ATA-ATCATAACTATTTAAACTGATTCAATAAACAG
500 ATAGA-CATAATTATTTGAACTGGTTTGA-AAATAG
* *
7628348 ATTTATTTTTTAAATCTGC-TACTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTATT
1 ATTTA-TTTTTAAATCT-CTTACTTATTAATTTTTGAAATATTAATAAAGTAGTATTATTTTATT
*** * * * ** * **
7628412 TCAAATAAG-TTGTATCATCAAAAACAATTATTTTATGACAAAACAAAAT-GT-AGTAATGATTT
64 TTGGATAAGCTTTTATGAACTGAAACAATTGTTTTATGACAAAAC-AAATGGTCA-TAAAAATTT
* * * *** * * * * *** *
7628474 GTAGTAGATAATCACTCAAATGGCCACAATTATTTTAA-TTGATTCAATAAATAGATTTTATTTT
127 -AAATAAATAATTGTTCAAATAGTCATAATTATTTAAACTT-ATTTGGTAAACAGA-TTTATTTT
* * ** * * * **
7628538 TTAAATTTTTTACTTATTAA-TTTGGGAAATATTAATAAATTAGTACTA-TTTATTCCATTTAAG
189 TTAAATCTCTTACTTATTAATTTTTAG-AATGTTAATAAATTAGTATTATTTTATTCTAAATAAG
* * * * * * * *
7628601 CTTGTATTAATTGAAACAATTATTTTATGACAAATCAAAAGATTATAA-GAATTTTAAATAGATA
253 CTTGTATAAACTAAAACAATTATTTTATGATAAA-CAAAAGGTTAAAATG-ATTTGAAATAAATA
* * ** * * ** * * **
7628665 ATTGTTCAAATAATAATAACTATTTGAATTTATTTGGTAAATAAATTTATTTTTTTAAATTTCTT
316 ATTATTCAAATAGTCTTAAATATTTGAACTGGTTCGGCAAGCAAATTTA-TTTTTTAAA--TC--
** * * * *
7628730 TCTTATTAATTTTTTG-AATGTTAATAAATTAGTATTAATTT-CTTCTAAATAAGCTTGTATG--
376 TCTTATTAA-TTTTTGAAAAATTAATAAATTAGTATTATTTTATTTC-GAATAAACTT-TATGTT
* * ** * * * * * * *
7628791 AATTGAAACAGTTGTTTTATGACTAAGCAAAAGGTTAGAATGATTTGCAATATATAATTATTCCA
438 AA--AAAATAGTTGTTTTATGAC-AAAAAAAAGGTAATAACGATTTGAAATAGATAATTGTTCAA
* * ** * * * * * * *
7628856 ATAGTCTTAACCATATGAATTGATTCAGTAAACAA
500 ATAGACATAATTATTTGAACTGGTT-TGAAAATAG
* * ** * * * *
7628891 AGTTAGTTTTTAAATCTCTTAATTATTAATTTTCAAAATATTATTAAATTAGTATTATTTTAATC
1 ATTTA-TTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAAGTAGTATTATTTTATTT
* * * * * * * * **
7628956 CGAATAAGCTTATATGAAC-AAAACAATTATTCTATAACAAAAGAAA-GGTCATAATGATTTGAA
65 TGGATAAGCTTTTATGAACTGAAACAATTGTTTTATGACAAAACAAATGGTCATAAAAATTT-AA
* ** * * * * * * *
7629019 ATAGATAATAATTCATATAGTCTTAACTATTTGAAC-TAGTTCG-ACAATTAGATTT-TTTTTTA
129 ATAAATAATTGTTCAAATAGTCATAATTATTTAAACTTATTTGGTA-AA-CAGATTTATTTTTTA
* * ** * * * * * * * ** *
7629081 ATTTTCTTGGTTATTAAGTTTTGGAATATTATTAAATTAATATTATTTTATTTTGAATAAAATAG
192 AATCTCTTACTTATTAATTTTTAGAATGTTAATAAATTAGTATTATTTTATTCTAAATAAGCTTG
* * ** * * *
7629146 TATGAAC--AAGCAA--A-ACTAT--TCAAATAAAAGGTTATAATGATTTGAAATAGATAATTAT
257 TATAAACTAAAACAATTATTTTATGAT-AAACAAAAGGTTAAAATGATTTGAAATAAATAATTAT
* * * * * * *
7629204 TCAAATAGT-TAAAACTATTTGAAATGTTTTGGCAAGCAGATTTACTTTTTAAATCTGTTACTGA
321 TCAAATAGTCTTAAA-TATTTGAACTGGTTCGGCAAGCAAATTTATTTTTTAAATC---T-CTTA
* * * *
7629268 TTAATTTTTTAAATATTAATAAATTAGTATTATTTTATTTCGAACAAACTTATAT-TAACAAAAA
381 TTAATTTTTGAAAAATTAATAAATTAGTATTATTTTATTTCGAATAAACTT-TATGTTA-AAAAA
* * **
7629332 TAGTTGTTTTATGACAAAACAAAAAGTAATAACGATTTGAAATAGATAATTATTCAAATAGTTAT
444 TAGTTGTTTTATGACAAAA-AAAAGGTAATAACGATTTGAAATAGATAATTGTTCAAATAGACAT
* *
7629397 AATTATGTGAACTGGTTTGGCAAATAG
508 AATTATTTGAACTGGTTT-GAAAATAG
* * * * * *
7629424 AATTATTTTCTAAATCTCTTACTTATAAATTTTTAAAATATTAATAAATTAGTTTTATTCTATTT
1 ATTTATTTT-TAAATCTCTTACTTATTAATTTTTGAAATATTAATAAAGTAGTATTATTTTATTT
* * * * ** * * * * *
7629489 CGAATAAACGTTTATGAGTTGAAATAATTATTTTATGACACAGCAAAAGGTCATAAAAATTTAAA
65 TGGATAAGCTTTTATGAACTGAAACAATTGTTTTATGACAAAACAAATGGTCATAAAAATTTAAA
* * * * * * *
7629554 TATATAATTGTTCATATAGTCTTAGTTGTTTCAA-TTCATTCGGTAAAC-GAATTTATTTTTTAA
130 TAAATAATTGTTCAAATAGTCATAATTATTTAAACTT-ATTTGGTAAACAG-ATTTATTTTTTAA
* * * * * *
7629617 ATCTCTTAATTATTAATTTTTAGAATATTACTTAATTAGTATTATTTTATTTTGAATAAGCTTGT
193 ATCTCTTACTTATTAATTTTTAGAATGTTAATAAATTAGTATTATTTTATTCTAAATAAGCTTGT
** * * * * *
7629682 A-CGACCAGACACAATTGTTTTATGATAGAACAAAAGGTTATAATAATTTGAAATAAATAATTAT
258 ATAAACTA-AAACAATTATTTTATGATA-AACAAAAGGTTAAAATGATTTGAAATAAATAATTAT
* * * *** *
7629746 TCAAATTGTCGTAACTATTTGAACTGGTTCAAAAACCAAATTTATTTTTTAAATCTCTTATTAAT
321 TCAAATAGTCTTAAATATTTGAACTGGTTCGGCAAGCAAATTTATTTTTTAAATCTCTTATTAAT
* * * * * * *
7629811 TCTTGAAAAACTAATAAATTAATATTATTTTATTTTGAATAACCTTGTATGTTGAAAAATAATTG
386 TTTTGAAAAATTAATAAATTAGTATTATTTTATTTCGAATAAACTT-TATGTTAAAAAATAGTTG
* * * * * *
7629876 TTTTATAACAAAAAAAAGGTAACAATGATTTGAAATAGATAATTGGTCAAATGGCCATAATTATT
450 TTTTATGACAAAAAAAAGGTAATAACGATTTGAAATAGATAATTGTTCAAATAGACATAATTATT
* *
7629941 TGAACTGATTCGATAAACTA-
515 TGAACTGGTTTGA-AAA-TAG
* *
7629961 ATTTATTATTTAAATCTCTTACTTATTGATTTTTGAAATATTAATAAAGGAGTATTATTTTATTT
1 ATTTATT-TTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAAGTAGTATTATTTTATTT
* **
7630026 TGGATAAGCTTTTATGAACTAAAACAATTGTTTTATGACAAAACAAATGGTCATAATATTTTTAA
65 TGGATAAGCTTTTATGAACTGAAACAATTGTTTTATGACAAAACAAATGGTCATAA-AAATTTAA
* * * *
7630091 ATAGATAATTATTCAAATAGTCATAATTATTTAAACTTATTTGGTAGACAGATTTATTTTTCCAA
129 ATAAATAATTGTTCAAATAGTCATAATTATTTAAACTTATTTGGTAAACAGATTTATTTTT-TAA
* * * * *
7630156 ATCTCATGCTTATTAATTTTTTGAATGTTAATAAATTAGTATTATTTTATTCCAAATAAGCTCGT
193 ATCTCTTACTTATTAATTTTTAGAATGTTAATAAATTAGTATTATTTTATTCTAAATAAGCTTGT
* * * * *
7630221 ATAAACTAAAACAATTATTATATGATTAAACAAAAGGTCAAAACGATTTAAAATGAATAATTATT
258 ATAAACTAAAACAATTATTTTATGA-TAAACAAAAGGTTAAAATGATTTGAAATAAATAATTATT
*
7630286 CTAATAGTCTTAAATATTTGAACTGGTTCGGCAAGCAAATTTATTTTTTAAATCTCTTATTAATT
322 CAAATAGTCTTAAATATTTGAACTGGTTCGGCAAGCAAATTTATTTTTTAAATCTCTTATTAATT
* * * * *
7630351 TTTGAAATATTATTAAATTAGTATTATTTT-TATCCGAATAAGCTCTTATGATAAAAAATAGTTG
387 TTTGAAAAATTAATAAATTAGTATTATTTTAT-TTCGAATAAACT-TTATGTTAAAAAATAGTTG
* * * * * * * * *
7630415 TTTTATGAGAAAACAAAGATCATAACAATTTGAGATTGATATTTGTTCAAATAAACATAATTATT
450 TTTTATGACAAAAAAAAGGTAATAACGATTTGAAATAGATAATTGTTCAAATAGACATAATTATT
* *
7630480 GGAATTGGTTTGAAAAATAG
515 TGAACTGGTTTG-AAAATAG
* * * ** * *
7630500 CTTTAGCTTTTCAATCTCTTGGTTATTAATTTTTGAAATATTAATAATGTAGCATTATTTTATTT
1 ATTTA-TTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAAGTAGTATTATTTTATTT
* * *
7630565 TGGATAAGTTTTTAGGAACTGAAACAATTGTTTTATGACAAAACAAAAT-GTCATAACAACTTTA
65 TGGATAAGCTTTTATGAACTGAAACAATTGTTTTATGACAAAAC-AAATGGTCATAA-AAATTTA
* * * * *
7630629 AATAAATAATTGGTT-AAATAGTCA-AATCTATTTGAACTTGTTTGATAAACAAAATATATTTTT
128 AATAAATAATT-GTTCAAATAGTCATAAT-TATTTAAACTTATTTGGTAAAC-AGATTTA-TTTT
* * *
7630692 TTAAATCTCTTACTCATTAATTTTTCGAATGTTAATAAATTAGTATTATTTTATTCTAAATAAAC
189 TTAAATCTCTTACTTATTAATTTTTAGAATGTTAATAAATTAGTATTATTTTATTCTAAATAAGC
* * * * * *
7630757 TTGCATAAATTGAAATAATTATTTTATAACTAAACAAAAGGTTAGAATGATTTGAAATAAATAAT
254 TTGTATAAACTAAAACAATTATTTTATGA-TAAACAAAAGGTTAAAATGATTTGAAATAAATAAT
* * * * * * * * * *
7630822 TGTTCTAATAGTTTTAATTATTTAAACTAGTTTGGCAAACACATTTATTTTTTAAATCTCTTACT
318 TATTCAAATAGTCTTAAATATTTGAACTGGTTCGGCAAGCAAATTTATTTTTTAAATCTCTTATT
*
7630887 AATTTTTGGAAAA
383 AATTTTTGAAAAA
7630900 GAAATAATTA
Statistics
Matches: 2000, Mismatches: 436, Indels: 211
0.76 0.16 0.08
Matches are distributed among these distances:
518 28 0.01
519 78 0.04
520 117 0.06
521 34 0.02
522 10 0.00
524 1 0.00
528 3 0.00
530 2 0.00
531 2 0.00
532 13 0.01
533 186 0.09
534 119 0.06
535 84 0.04
536 6 0.00
537 160 0.08
538 134 0.07
539 424 0.21
540 238 0.12
541 46 0.02
542 167 0.08
543 141 0.07
544 7 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (533 bp):
ATTTATTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAAGTAGTATTATTTTATTTT
GGATAAGCTTTTATGAACTGAAACAATTGTTTTATGACAAAACAAATGGTCATAAAAATTTAAAT
AAATAATTGTTCAAATAGTCATAATTATTTAAACTTATTTGGTAAACAGATTTATTTTTTAAATC
TCTTACTTATTAATTTTTAGAATGTTAATAAATTAGTATTATTTTATTCTAAATAAGCTTGTATA
AACTAAAACAATTATTTTATGATAAACAAAAGGTTAAAATGATTTGAAATAAATAATTATTCAAA
TAGTCTTAAATATTTGAACTGGTTCGGCAAGCAAATTTATTTTTTAAATCTCTTATTAATTTTTG
AAAAATTAATAAATTAGTATTATTTTATTTCGAATAAACTTTATGTTAAAAAATAGTTGTTTTAT
GACAAAAAAAAGGTAATAACGATTTGAAATAGATAATTGTTCAAATAGACATAATTATTTGAACT
GGTTTGAAAATAG
Found at i:7632622 original size:542 final size:531
Alignment explanation
Indices: 7631439--7633583 Score: 1317
Period size: 542 Copynumber: 4.0 Consensus size: 531
7631429 TTTGATTAAC
*
7631439 AAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTATTAAATTTA-TATTATTTTA
1 AAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAA-TTAGTATTATTTTA
* * ** * * *
7631503 ATTCGAATAAGCTTGTACGAACAAAAAAATTATTTTATGA-TGAGCAAAAGTTCAAAACATTTTA
65 TTTCGAATAAGCTTGTATGAACAAAAAAATTATTTTATGACAAAACAAAAGGTCATAACATTTTA
* * * *
7631567 AACAGATAATTGTTCAAATAATCACAACTATTTAAACTTGTTCGATAAACATATTTATTTTTTAA
130 AACAAACAATTATTCAAATAATCACAACTATTTAAACTTGTTCGATAAACAGATTTATTTTTTAA
* * * * ** *
7631632 AATTTCTTATTGATTTTTAGAATGTTATTAAATAGTATTATTTTATTTTGAATAATTTTGCATGA
195 AATTTCTTATTAATTTTTAGAATGTTAATAAATAGCATTATTTTATTCTGAATAAGCTTGCAAGA
* * *
7631697 ACATAAACAATTATTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTTAAA
260 ACATAAACAAATATTTTATGACAAAACAAAAAGTCAGAACGATTTGAAATAGATAATTATTTAAA
* * * *
7631762 TAGACATGACTATTTGAATTGATTTAGTAAACAAATTAACTTTTTAAATCACTTATTAATTTTTG
325 TAGACATAACTATTTGAATTGATTCAGCAAACAAATTAACTTTTTAAATCACTTAATAATTTTTG
** * *
7631827 GAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTATATGAACTGAAACAATTATTTTA
390 GAATATTAATAAATTAGTATTATTTTATACTAAATAAGCTTAGATGAACTGAAACAATTATTTTA
* ** *
7631892 TGACAAAAAAAGGTCATAACGATTTTAAATAGATAATTATTAAGATAGTCGTAACTATTTGAATT
455 TGACAAAAAAAGATCATAACGATTAGAAATAGATAATTATTAAGATAGTCATAACTATTTGAATT
*
7631957 TGTTCAGTAAAT
520 GGTTCAGTAAAT
* * * *
7631969 AAATTTATTTTTTTAAA-CTCTTGCTTATTAATTTTAGAAATATTAAGAAATTAGCATTATTTTA
1 AAATTTA-TTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTA
* * * * * * * * *
7632033 TTTTGGACAAGCTTTTATAAACTAAAACAATTCTTTGATGTCAAAACAAAAGGTCATAACGATTT
65 TTTCGAATAAGCTTGTATGAAC-AAAAAAATTATTTTATGACAAAACAAAAGGTCATAAC-ATTT
* * * * * *
7632098 TAAATAAACAATTATTCAAGTAGTCA-AACTATTTTGAACTTGTTCGGTAAAGAGATTTATTTTT
128 TAAACAAACAATTATTCAAATAATCACAACTA-TTTAAACTTGTTCGATAAACAGATTTATTTTT
* * ** *
7632162 TCAAATCTTTTTTTATTAATTTTTTTAATGTTAATAAATTTGCATTATTTTATTCTGAATAAGCT
192 T-AAA--ATTTCTTATTAATTTTTAGAATGTTAATAAA-TAGCATTATTTTATTCTGAATAAGCT
* * * * * *
7632227 TGTAAG-ATATGAAACAAATATTTT-TTACTAAACAAAAAATTCAGAATGATTTGAAATAGATAA
253 TGCAAGAACAT-AAACAAATATTTTATGACAAAAC-AAAAAGTCAGAACGATTTGAAATAGATAA
** *** * * * * *
7632290 TTATTTTCATAGTTTTAACTATTTGAATT-AGTTCAGCGAATACATTTATTTTTTAAATCTCTTA
316 TTATTTAAATAGACATAACTATTTGAATTGA-TTCAGCAAACAAATTAACTTTTTAAA--TC--A
* * * *
7632354 CTTAATAATTTTTGGAATATTATTAAATTATTATTATTTT-TAACTAAATAAGCTTCGATG-ATT
376 CTTAATAATTTTTGGAATATTAATAAATTAGTATTATTTTAT-ACTAAATAAGCTTAGATGAACT
* * * * * *
7632417 AGAAACAATTGTTTTATGATAAAACAAAGATCTTAACGATTAGAGATTGATAATTGTTTAA-ATA
440 -GAAACAATTATTTTATGACAAAA-AAAGATCATAACGATTAGAAATAGATAATT-ATTAAGATA
7632481 GTCATAACTATTTG-ATATGGTTC-GATAAAT
502 GTCATAACTATTTGAAT-TGGTTCAG-TAAAT
* * * *
7632511 AGATTTATTTCTTAAATCTCTTACTTATTAATTTTTGAAATATTAATCAATTAGTATTATTCTAT
1 AAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTAT
* * * * *
7632576 TTCAAATAAACTTGTATGATCAAAAATAATTATTTTATGACAAAACAAATGGTCATAACAATTTG
66 TTCGAATAAGCTTGTATGAACAAAAA-AATTATTTTATGACAAAACAAAAGGTCATAAC-ATTTT
** * * ** * * * * *
7632641 AAGTAGATAATCGTTCAAATGATCATAATTATTTTAA-TTGATTC-AGTAAAC-GAACTTATTTT
129 AAACAAACAATTATTCAAATAATCACAACTATTTAAACTTG-TTCGA-TAAACAG-ATTTATTTT
* * * **
7632703 TT-AAATTTCTTACTT-ATTAATTTAGGAAATATTAATAAATTAGTATTATTTTATTTTGTCTAA
191 TTAAAATTTCTTA-TTAATT--TTTA-G-AATGTTAATAAA-TAGCATTATTTTATTCTGAATAA
** ** * * * ** * * * ** *
7632766 GCTTTTATTAAC-TAAAACAATTGTTTTATGATAAGTCAAAAGGTTATAATAATTTTAAATAGAC
250 GCTTGCAAGAACAT-AAACAAATATTTTATGACAAAACAAAAAGTCAGAACGATTTGAAATAGA-
* * * * * * **
7632830 T-ATTATTCAAATAGTA-ATAATTATTTAAATTTG-TTTAGTAAACATATTTAGTTTTTTAAATC
313 TAATTATTTAAATAG-ACATAACTATTTGAA-TTGATTCAGCAAACA-AATTAACTTTTTAAA--
* ** * * * * *
7632892 TCTTTCTTCTTAATTTTTTGAATATTAGTAAATT-GATATTAGTTTATTCTGAATAAGCTT-GTA
373 TC--ACTTAATAATTTTTGGAATATTAATAAATTAG-TATTATTTTATACTAAATAAGCTTAG-A
* * * * * * * *
7632955 TGAACTAAAACAGA-TGTTTTATGACTAAATAAAAGGTTAGAATGA-CATG-AATAGATAATTGT
434 TGAACTGAAACA-ATTATTTTATGAC-AAA-AAAAGATCATAACGATTA-GAAATAGATAATTAT
* * * * ** ** *
7633017 TCCA-ATAGTCTTAACCATTTGAACTAATTTGGTAAAC
495 T-AAGATAGTCATAACTATTTGAATTGGTTCAGTAAAT
* * * * *
7633054 AAATTTATTTTTT-AATCTCTTATTTATTAATTTTTGAAATATTATTAAATTAGAATTATTTAAA
1 AAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTAT
* * * * * * * * *
7633118 TCCAAATAAGCTTATATGAATAAAATAGTTCTTTTATGAC-AAACAATAGGTCATAACGATTTGA
66 TTCGAATAAGCTTGTATGAACAAAAAAATTATTTTATGACAAAACAAAAGGTCATAAC-ATTTTA
* * * * * * * * * * **
7633182 AATAGATAATTGTTTATATAGTC-CTAACTATTTGAACTAGCTCGATAATTAGATTTATTTTTTA
130 AACAAACAATTATTCAAATAATCAC-AACTATTTAAACTTGTTCGATAAACAGATTTATTTTTTA
** * * * * * ** * ** *
7633246 ATTTTTTGGGTTATTAAATTTTAGAATATTATTGAATTAATATTATTTTATTCCGAATAAAATAG
194 A-AATTT--CTTATTAATTTTTAGAATGTTAAT-AAATAGCATTATTTTATTCTGAATAAGCTTG
* * * * * * * *
7633311 -TATAA-ATAGAACCAAT-TGTTTAATGACAAAATAAAAAATTATAATGATTTGAAATAGATAAT
255 CAAGAACATA-AACAAATAT-TTT-ATGACAAAACAAAAAGTCAGAACGATTTGAAATAGATAAT
* * * * * * * * * **
7633373 AATTCAAATAGTCATAACTATTTGAAATGGTTTAGTAAACAGATT-ACCTTTTAAATCTTTTACC
317 TATTTAAATAGACATAACTATTTGAATTGATTCAGCAAACAAATTAACTTTTTAAATCACTT---
* ** ** * * * **
7633437 AATTAATTTTCT-AAATATTAATAAATTACCATTATTTTATTTTGAA-AA-CTTATATTAACAAA
379 AA-TAATTTT-TGGAATATTAATAAATTAGTATTATTTTATACTAAATAAGCTTAGATGAACTGA
* * * * * *
7633499 AATAATT-TTTTATGACAAAACAAAAAGTAATAACAATTTGAAATAGATAATTGTTCAA-ATAGT
442 AACAATTATTTTATGACAAAA-AAAGA-TCATAACGATTAGAAATAGATAATTATT-AAGATAGT
* *
7633562 TATAATTATTTGAATTGGTTCA
504 CATAACTATTTGAATTGGTTCA
7633584 ATAAGTTATA
Statistics
Matches: 1239, Mismatches: 295, Indels: 156
0.73 0.17 0.09
Matches are distributed among these distances:
529 3 0.00
530 60 0.05
531 23 0.02
532 18 0.01
533 54 0.04
534 12 0.01
535 16 0.01
536 86 0.07
537 106 0.09
538 52 0.04
539 22 0.02
540 159 0.13
541 111 0.09
542 351 0.28
543 141 0.11
544 24 0.02
545 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.43
Consensus pattern (531 bp):
AAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTAT
TTCGAATAAGCTTGTATGAACAAAAAAATTATTTTATGACAAAACAAAAGGTCATAACATTTTAA
ACAAACAATTATTCAAATAATCACAACTATTTAAACTTGTTCGATAAACAGATTTATTTTTTAAA
ATTTCTTATTAATTTTTAGAATGTTAATAAATAGCATTATTTTATTCTGAATAAGCTTGCAAGAA
CATAAACAAATATTTTATGACAAAACAAAAAGTCAGAACGATTTGAAATAGATAATTATTTAAAT
AGACATAACTATTTGAATTGATTCAGCAAACAAATTAACTTTTTAAATCACTTAATAATTTTTGG
AATATTAATAAATTAGTATTATTTTATACTAAATAAGCTTAGATGAACTGAAACAATTATTTTAT
GACAAAAAAAGATCATAACGATTAGAAATAGATAATTATTAAGATAGTCATAACTATTTGAATTG
GTTCAGTAAAT
Found at i:7632769 original size:361 final size:360
Alignment explanation
Indices: 7631421--7633587 Score: 1477
Period size: 361 Copynumber: 6.0 Consensus size: 360
7631411 CTTAATCATA
* * * * *
7631421 TGAAATGGTTTGATTAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTATT
1 TGAACTGGTTCGATAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAAT
* * ** *
7631486 AAATTTA-TATTATTTTAATTCGAATAAGCTTGTACGAACAAAAA-AATTATTTTATGA-TGAGC
66 AAA-TTAGTATTATTTTATTTCGAATAAGCTTGTATGAACAAAAACAATTATTTTATGACAAAAC
* * * * * * *
7631548 AAAAGTTCAAAAC-ATTTTAAACAGATAATTGTTCAAATAATCACAACTATTTAAACTTGTTC-G
130 AAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATGATCATAACTATTTGAACTTGTTCAG
* * * *
7631611 ATAAACATATTTATTTTTTAAA-AT-TT-CTTATTGATTTTTAGAATGTTATTAAA-TAGTATTA
195 ATAAACA-ATTTATTTTTTAAATCTCTTACTTATT-AATTTTAGAATATTAATAAATTAGTATTA
* * *
7631672 TTTTATTTTGAATAA-TTTTGCATGAAC-ATAAACAATTATTTTATGACAAAACAAAAGGTCATA
258 TTTTATTTTGAATAAGCTTTG-AT-AACTA-AAACAATTGTTTTATGATAAAACAAAAGGTCATA
* *
7631735 ACGATTTGAAATAGATAATTATTTAAATAGACATGACTATT
320 ACGATTTGAAATAGATAATTATTTAAATAGTCATAACTATT
* * * * * * *
7631776 TGAATTGATT-TAGTAAACAAATTAACTTTTTAAA--TC--ACTTATTAATTTTTGGAATATTAA
1 TGAACTGGTTCGA-TAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAA
* * **
7631836 TAAATTAGTATTATTTTATTTTGAATAAGCTTATATGAACTGAAACAATTATTTTATGAC-AAA-
65 TAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACAAAAACAATTATTTTATGACAAAAC
* * * *
7631899 AAAAGGTCATAACGATTTTAAATAGATAATTATT-AAGAT-AGTCGTAACTATTTGAATTTGTTC
130 AAAAGGTCATAACGATTTGAAATAGATAATTGTTCAA-ATGA-TCATAACTATTTGAACTTGTTC
* * * *
7631962 AG-TAAATAAATTTATTTTTTTAAA-CTCTTGCTTATTAATTTTAGAAATATTAAGAAATTAGCA
193 AGATAAA-CAATTTA-TTTTTTAAATCTCTTACTTATTAATTTTAG-AATATTAATAAATTAGTA
* * * * *
7632025 TTATTTTATTTTGGACAAGCTTTTATAAACTAAAACAATTCTTTGATG-TCAAAACAAAAGGTCA
255 TTATTTTATTTTGAATAAGCTTTGAT-AACTAAAACAATTGTTTTATGAT-AAAACAAAAGGTCA
* * * * *
7632089 TAACGATTTTAAATAAACAATTATTCAAGTAGTCA-AACTATTT
318 TAACGATTTGAAATAGATAATTATTTAAATAGTCATAACTA-TT
* * * ** ** *
7632132 TGAACTTGTTCGGTAAAGAGATTTATTTTTTCAAATCT-TTTTTTATTAATTTTTTTAATGTTAA
1 TGAACTGGTTCGATAAACAGATTTATTTTTT-AAATCTCTTACTTATTAATTTTTGAAATATTAA
* * * ** * * *
7632196 TAAATTTGCATTATTTTA-TTCTGAATAAGCTTGTAAGATA-TGAAACAAATATTTT-TTACTAA
65 TAAATTAGTATTATTTTATTTC-GAATAAGCTTGTATGA-ACAAAAACAATTATTTTATGACAAA
** * * * * **
7632258 ACAAAAAATTCAGAATGATTTGAAATAGATAATTATTTTCATA-G-TTTTAACTATTTGAA-TTA
128 AC-AAAAGGTCATAACGATTTGAAATAGATAA-T-TGTTCAAATGATCATAACTATTTGAACTT-
** * * *
7632320 GTTCAGCGAATAC-ATTTATTTTTTAAATCTCTTACTTAATAATTTTTGGAATATTATTAAATTA
189 GTTCAGATAA-ACAATTTATTTTTTAAATCTCTTACTTATTAA-TTTTAGAATATTAATAAATTA
* ** * * * * *
7632384 TTATTATTTT-TAACTAAATAAGCTTCGATGATTAGAAACAATTGTTTTATGATAAAAC-AAAGA
252 GTATTATTTTAT-TTTGAATAAGCTTTGATAACTA-AAACAATTGTTTTATGATAAAACAAAAGG
* * * * *
7632447 TCTTAACGATTAGAGATTGATAATTGTTTAAATAGTCATAACTATT
315 TCATAACGATTTGAAATAGATAATTATTTAAATAGTCATAACTATT
* *
7632493 TGATA-TGGTTCGATAAATAGATTTATTTCTTAAATCTCTTACTTATTAATTTTTGAAATATTAA
1 TGA-ACTGGTTCGATAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAA
* * * * * *
7632557 TCAATTAGTATTATTCTATTTCAAATAAACTTGTATGATCAAAAATAATTATTTTATGACAAAAC
65 TAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACAAAAACAATTATTTTATGACAAAAC
* * * * * *
7632622 AAATGGTCATAACAATTTGAAGTAGATAATCGTTCAAATGATCATAATTATTTTAA-TTGATTCA
130 AAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATGATCATAACTATTTGAACTTG-TTCA
* *
7632686 G-TAAACGAACTTATTTTTTAAATTTCTTACTTATTAA-TTTAGGAAATATTAATAAATTAGTAT
194 GATAAAC-AATTTATTTTTTAAATCTCTTACTTATTAATTTTA-G-AATATTAATAAATTAGTAT
** * ** *
7632749 TATTTTATTTTGTCTAAGCTTTTATTAACTAAAACAATTGTTTTATGATAAGTCAAAAGGTTATA
256 TATTTTATTTTGAATAAGCTTTGA-TAACTAAAACAATTGTTTTATGATAAAACAAAAGGTCATA
** * * * *
7632814 ATAATTTTAAATAGACT-ATTATTCAAATAGTAATAATTATT
320 ACGATTTGAAATAGA-TAATTATTTAAATAGTCATAACTATT
* * * * * * *
7632855 TAAATTTGTT-TAGTAAACATATTTAGTTTTTTAAATCTCTTTCTTCTTAATTTTTTG-AATATT
1 TGAACTGGTTCGA-TAAACAGATTTA-TTTTTTAAATCTCTTACTTATTAA-TTTTTGAAATATT
* * * *
7632918 AGTAAATT-GATATTAGTTTA-TTCTGAATAAGCTTGTATGAACTAAAACAGA-TGTTTTATGAC
63 AATAAATTAG-TATTATTTTATTTC-GAATAAGCTTGTATGAACAAAAACA-ATTATTTTATGAC
* * * * * ** * * * *
7632980 TAAATAAAAGGTTAGAATGACATG-AATAGATAATTGTTCCAAT-AGTCTTAACCATTTGAACTA
125 AAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATGA-TCATAACTATTTGAACTT
* * * * * *
7633043 ATT-TGGTAAACAAATTTATTTTTT-AATCTCTTATTTATTAATTTTTGAAATATTATTAAATTA
189 GTTCAGATAAAC-AATTTATTTTTTAAATCTCTTACTTATTAATTTTAG-AATATTAATAAATTA
* * * *** * * * * *
7633106 GAATTATTTAAATCCAAATAAGCTTAT-ATGAA-TAAAATAGTTCTTTTATGA-CAAACAATAGG
252 GTATTATTTTATTTTGAATAAGCTT-TGAT-AACTAAAACAATTGTTTTATGATAAAACAAAAGG
* * *
7633168 TCATAACGATTTGAAATAGATAATTGTTTATATAGTCCTAACTATT
315 TCATAACGATTTGAAATAGATAATTATTTAAATAGTCATAACTATT
* * ** * * ** *
7633214 TGAACTAGCTCGATAATTAGATTTATTTTTT-AATTTTTTGGGTTATTAAATTTT-AGAATATTA
1 TGAACTGGTTCGATAAACAGATTTATTTTTTAAATCTCTT-ACTTATTAATTTTTGA-AATATTA
* * * * ** * * * * * * *
7633277 TTGAATTAATATTATTTTATTCCGAATAAAATAGTATAAATAGAACCAATTGTTTAATGACAAAA
64 ATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACAAAAACAATTATTTTATGACAAAA
* ** * * ** * * *
7633342 TAAAAAATTATAATGATTTGAAATAGATAATAATTCAAAT-AGTCATAACTATTTGAAATGGTTT
129 CAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATGA-TCATAACTATTTGAACTTGTTC
** * ** **
7633406 AG-TAAACAGA-TTACCTTTTAAATCTTTTACCAATTAATTTTCTA-AATATTAATAAATTACCA
193 AGATAAACA-ATTTATTTTTTAAATCTCTTACTTATTAA-TTT-TAGAATATTAATAAATTAGTA
* * * * *
7633468 TTATTTTATTTTGAA-AA-CTTAT-ATTAACAAAAATAATT-TTTTATGACAAAACAAAAAGTAA
255 TTATTTTATTTTGAATAAGCTT-TGA-TAACTAAAACAATTGTTTTATGATAAAACAAAAGGTCA
* * * * *
7633529 TAACAATTTGAAATAGATAATTGTTCAAATAGTTATAATTATT
318 TAACGATTTGAAATAGATAATTATTTAAATAGTCATAACTATT
* *
7633572 TGAATTGGTTCAATAA
1 TGAACTGGTTCGATAA
7633588 GTTATAATTA
Statistics
Matches: 1407, Mismatches: 317, Indels: 173
0.74 0.17 0.09
Matches are distributed among these distances:
350 3 0.00
351 71 0.05
352 61 0.04
353 14 0.01
354 10 0.01
355 45 0.03
356 105 0.07
357 34 0.02
358 157 0.11
359 152 0.11
360 100 0.07
361 309 0.22
362 236 0.17
363 97 0.07
364 12 0.01
365 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.43
Consensus pattern (360 bp):
TGAACTGGTTCGATAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAAT
AAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACAAAAACAATTATTTTATGACAAAACA
AAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATGATCATAACTATTTGAACTTGTTCAGA
TAAACAATTTATTTTTTAAATCTCTTACTTATTAATTTTAGAATATTAATAAATTAGTATTATTT
TATTTTGAATAAGCTTTGATAACTAAAACAATTGTTTTATGATAAAACAAAAGGTCATAACGATT
TGAAATAGATAATTATTTAAATAGTCATAACTATT
Found at i:7634141 original size:15 final size:16
Alignment explanation
Indices: 7634121--7634150 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7634111 AAGTTCAAAT
7634121 AATAATTA-CTATTTG
1 AATAATTATCTATTTG
7634136 AATAATTATCTATTT
1 AATAATTATCTATTT
7634151 CAAATCATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.40, C:0.07, G:0.03, T:0.50
Consensus pattern (16 bp):
AATAATTATCTATTTG
Found at i:7634445 original size:182 final size:180
Alignment explanation
Indices: 7633622--7634444 Score: 765
Period size: 180 Copynumber: 4.5 Consensus size: 180
7633612 GTTTGTTATG
* * * * * * * * *
7633622 ACCTTTTCTTTTATCATAAAAAAATTATTTCAACTCGTATAAGCTTA-TTCAAAATAAAATAATA
1 ACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTC-GAATAAAATAATA
* ** * * * * * **
7633686 CTAAATTATTAATATTTTGAAGATTAATCATTAAGAGATTTAAAAAATAAATATGTTTACTGATT
65 -TAATTTATTAATATTCCGAAAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACCGAAC
* * * * **
7633751 AAGTTTAAATAATTATGATTATTTGAACAGTTATCTATTTGAAATTGCTA-A
129 AAGTTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATCACTATA
* * * * * *
7633802 ACCTTTTGCTTTGTCATAAAATAATTTTTTCTGTTCATACAAGCTTATTTCAAAAAAAATAATAT
1 ACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTCGAATAAAATAATAT
** * * *
7633867 AAATTTATTAATATTAAGAAAATTAATAAGTAAAAGGTTTAAAAAATAAATCTATTTACCGAACA
66 -AATTTATTAATATTCCGAAAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACCGAACA
** * *** *
7633932 AGTTCAAATTGTTATGACTATTTGAACAATTATTTATTTCAAATTGTTATG
130 AGTTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATCACTATA
* * * * * *
7633983 ACTTTTTCTTTTGTCATAAAACAA-TGTTTCTATTCATACAAGTTTATTTGGATTAAAATATTAT
1 ACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTCGAATAAAATAATA-
** * * ** *
7634047 TAATTTATTAATATTTTGACAATTTATAAGTAAAAGATTTAAAAAATAAATATGTTTATTGAATA
65 TAATTTATTAATATTCCGAAAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACCGAACA
* * * * * *
7634112 AGTTCAAATAATAATTACTATTTGAATAATTATCTATTTCAAATCATTGTG
130 AGTTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATCACTATA
* * * * *
7634163 ACCTTTTGTTTTGTAATAAAACAATTGTTTCCACTCATATATGCTTATTT-GAAATAAAATAATA
1 ACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTCG-AATAAAATAATA
* ** * * * *
7634227 CTAATTTATTAATATTCCAAAAATTAAGGAGTAAAATGATTAAAAAAATGAATATGCTTACCAAA
65 -TAATTTATTAATATTCCGAAAATTAATAAGTAAAA-GATTTAAAAAATAAATATGTTTACCGAA
* * * * * *
7634292 CAAGTTCAAATAGTTATGATTATCTAAACAATTATCGATTTCAAAACACTATA
128 CAAGTTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATCACTATA
* * * *
7634345 ACCTTTTATTTTATCATAAAACAATTGGTTT-TATTCATGCAAGCTTATTTCGAATACAATAATA
1 ACCTTTTGTTTTGTCATAAAACAATT-GTTTCTATTCATACAAGCTTATTTCGAATAAAATAATA
*
7634409 TGAATTTATTAATATTCCCAAAATTAATAAGTAAAA
65 T-AATTTATTAATATTCCGAAAATTAATAAGTAAAA
7634445 TTTTAGAAAA
Statistics
Matches: 520, Mismatches: 113, Indels: 18
0.80 0.17 0.03
Matches are distributed among these distances:
179 1 0.00
180 290 0.56
181 83 0.16
182 141 0.27
183 5 0.01
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (180 bp):
ACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTCGAATAAAATAATAT
AATTTATTAATATTCCGAAAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACCGAACAA
GTTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATCACTATA
Found at i:7634577 original size:153 final size:152
Alignment explanation
Indices: 7634299--7634596 Score: 393
Period size: 153 Copynumber: 2.0 Consensus size: 152
7634289 AAACAAGTTC
* * * *
7634299 AAATAGTTATGATTATCTAAACAATTATCGATTTCAAAACACTATAACCTTTTATTTTATCATAA
1 AAATAGTTATGACTATCTAAACAATTATCGATTTCAAAACACTATAACCATTTATTTGATAATAA
** * *
7634364 AACAATTGGTTTTATTCATGCAAGCTTATTTCGAATACAATAATATGAATTTATTAATATTCCCA
66 AACAATTGGTTTTATTCAAACAAGCTTATTTAGAATAAAATAATATGAATTTATTAATATT-CCA
7634429 AAATTAATAAGTAAAATTTTAGA
130 AAATTAATAAGTAAAATTTTAGA
* * * * * * * *
7634452 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGCTATGACCATTTGTTTGGTAATAA
1 AAATAGTTATGACTATCTAAACAATTATCGATTTCAAAACACTATAACCATTTATTTGATAATAA
* *
7634517 ACCAATT-GTTTCTATTCAAACAAGCTTATTTAGAATAAAATAATACTG-ATTTATTAATATTTC
66 AACAATTGGTTT-TATTCAAACAAGCTTATTTAGAATAAAATAATA-TGAATTTATTAATATTCC
7634580 AAAATTAATAAGTAAAA
129 AAAATTAATAAGTAAAA
7634597 GATTTAAAGA
Statistics
Matches: 125, Mismatches: 18, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
152 22 0.18
153 101 0.81
154 2 0.02
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (152 bp):
AAATAGTTATGACTATCTAAACAATTATCGATTTCAAAACACTATAACCATTTATTTGATAATAA
AACAATTGGTTTTATTCAAACAAGCTTATTTAGAATAAAATAATATGAATTTATTAATATTCCAA
AATTAATAAGTAAAATTTTAGA
Found at i:7634754 original size:180 final size:177
Alignment explanation
Indices: 7634452--7635350 Score: 721
Period size: 180 Copynumber: 5.2 Consensus size: 177
7634442 AAATTTTAGA
** * *
7634452 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGCTATGACCATTTGTTTGGTAATAA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC-TTTGTTTTGTCATAA
* * *
7634517 ACCAATTGTTTCTATTCAAACAAGCTTATTTAGAATAAAATAATACTGATTTATTAATATTTCAA
65 AACAATTGTTTCTATTCATACAAGCTTATTTA-AATAAAATAATACTAATTTATTAATATTTCAA
* *
7634582 AATTAATAAGTAAAAGATTTAAAGAATAAATTTGTTTATCGAGTAAGTTC
129 AATTAATAAGTAAAAGATTTAAA-AATAAATCTGTTTATCGAATAAGTTC
* * *
7634632 AAATAGTTATGACTATTTGAACAATTATTTATTTCAAATCATTATGATCTTTTGTTTTGTCGTAA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGA-CCTTTGTTTTGTCATAA
*
7634697 AACAATTGTTTCTATTCATACAAGTTTATTTGAAATAAAATAATACTAATTTATTAATA-TTCTA
65 AACAATTGTTTCTATTCATACAAGCTTATTT-AAATAAAATAATACTAATTTATTAATATTTC-A
* * * * * *
7634761 AAATTAATAAGTTAAAGATTTAAAACTTTAATCTATTTACCGAACAAGTTC
128 AAATTAATAAGTAAAAGATTTAAAA-ATAAATCTGTTTATCGAATAAGTTC
* * * ** *
7634812 AAATAGTCATGTC-ATTTGAACTATTATCTATTTCAAATTGTTATGA-C--TGTTTTGTCGTAAA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTGTTTTGTCATAAA
* * ** * * * *
7634873 AGAATTATTTCTATTCATACAAAATTATTTAGAATAAAATAACAATAATTTATTACTATTTTAAA
66 ACAATTGTTTCTATTCATACAAGCTTATTTA-AATAAAATAATACTAATTTATTAATATTTCAAA
* ** ** **
7634938 A--ATTAA-TAAAAGATTTAAAAACTAAATCTCCTTATAAAACCAGTTC
130 ATTAATAAGTAAAAGATTTAAAAA-TAAATCTGTTTATCGAATAAGTTC
* * * * *
7634984 AAATAGATATGACTATTTAAACAATTATCTATCTCAAATTATTATGATCTTTGTTTTGGTTC-TA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTGTTTT-G-TCATA
* * * * * * * *
7635048 AAAC-A-------T-TT-GT-CAAGCTTATTTGGAGTAAAATATTGCTAAATTAATAATATTTTA
64 AAACAATTGTTTCTATTCATACAAGCTTATTT-AAATAAAATAATACTAATTTATTAATA-TTTC
* * * *
7635102 AAAATTAATAAG-----GATTTAAAAACTAAATGTGTTT-GCTAATCTAGTTC
127 AAAATTAATAAGTAAAAGATTTAAAAA-TAAATCTGTTTATCGAAT-AAGTTC
* * * * * * *
7635149 AAATAGTTAAGACTATTAGAACAATTATCTATTTCAAAT-TTTCTTACCTTTTGTTTAGACATAA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC-TTTGTTTTGTCATAA
* * * * ** *
7635213 AATAATTGTTTCGATTCATACATGTTTACTCAAAATAAAATAATACTAATTTATTAACA-TTCAA
65 AACAATTGTTTCTATTCATACAAGCTTA-TTTAAATAAAATAATACTAATTTATTAATATTTC--
* *
7635277 AAAATTAATAAGTAAAA-A-AT-AAAA-AAATTTGTTTAGT-GAATAAGTTC
127 AAAATTAATAAGTAAAAGATTTAAAAATAAATCTGTTTA-TCGAATAAGTTC
*
7635324 AAATAGTTATGACTATTTGAATAATTA
1 AAATAGTTATGACTATTTGAACAATTA
7635351 CCTCTTTAAA
Statistics
Matches: 569, Mismatches: 108, Indels: 89
0.74 0.14 0.12
Matches are distributed among these distances:
163 1 0.00
164 13 0.02
165 66 0.12
166 27 0.05
167 8 0.01
168 2 0.00
169 5 0.01
172 40 0.07
173 37 0.07
174 3 0.01
175 143 0.25
176 13 0.02
177 10 0.02
178 3 0.01
179 34 0.06
180 162 0.28
181 2 0.00
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (177 bp):
AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTGTTTTGTCATAAA
ACAATTGTTTCTATTCATACAAGCTTATTTAAATAAAATAATACTAATTTATTAATATTTCAAAA
TTAATAAGTAAAAGATTTAAAAATAAATCTGTTTATCGAATAAGTTC
Found at i:7635119 original size:18 final size:18
Alignment explanation
Indices: 7635085--7635123 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7635075 AAATATTGCT
*
7635085 AAATTAATAATATTTTAA
1 AAATTAATAAGATTTTAA
7635103 AAATTAATAAGGA-TTTAA
1 AAATTAATAA-GATTTTAA
7635121 AAA
1 AAA
7635124 CTAAATGTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 18 0.95
19 1 0.05
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (18 bp):
AAATTAATAAGATTTTAA
Found at i:7641270 original size:61 final size:61
Alignment explanation
Indices: 7641204--7641319 Score: 153
Period size: 61 Copynumber: 1.9 Consensus size: 61
7641194 TTTGGAAAAT
*
7641204 AAAAATGCCTTCAATAATCCCCTT-ATTTTTTATGAGGGGATTATTGAAGGCGTTTTGTGCA
1 AAAAATGCCTTCAATAATCCCCTTAATTTTTTATGA-GAGATTATTGAAGGCGTTTTGTGCA
* * ** *
7641265 AAAAATGCTTTTAATAATTTCTTTCAATTTTTTATGAGAGATTATTGAAGGCGTT
1 AAAAATGCCTTCAATAATCCCCTT-AATTTTTTATGAGAGATTATTGAAGGCGTT
7641320 GCAAGCAAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
61 19 0.40
62 17 0.36
63 11 0.23
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.41
Consensus pattern (61 bp):
AAAAATGCCTTCAATAATCCCCTTAATTTTTTATGAGAGATTATTGAAGGCGTTTTGTGCA
Found at i:7641394 original size:1 final size:1
Alignment explanation
Indices: 7641388--7641420 Score: 66
Period size: 1 Copynumber: 33.0 Consensus size: 1
7641378 TATTTTCTGT
7641388 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
7641421 CACCTTCAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:7641798 original size:63 final size:61
Alignment explanation
Indices: 7641729--7641897 Score: 173
Period size: 62 Copynumber: 2.7 Consensus size: 61
7641719 TTTTATGAGC
*
7641729 AGATTATTGAAGACATTTTTTTGCCTAAAACACATTCAATAATCTCTGATAAAAAATTAGAAA-
1 AGATTATTGAAGGCA-TTTTTTGCCTAAAACACATTCAATAATCTCT-ATAAAAAATTA-AAAG
* ** * * *
7641792 AGATTATTGAAGGCATTTTTTGCAC-AAGATGCCTTCAATAATCCACTCTAAAAAATTAAAAG
1 AGATTATTGAAGGCATTTTTTGC-CTAAAACACATTCAATAAT-CTCTATAAAAAATTAAAAG
* * *
7641854 AGATTATTAAAGGCATTTTTAGTCTAAAACA-ACTTCAATAATCT
1 AGATTATTGAAGGCATTTTTTGCCTAAAACACA-TTCAATAATCT
7641898 TTTTTGTAAA
Statistics
Matches: 86, Mismatches: 15, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
61 5 0.06
62 63 0.73
63 18 0.21
ACGTcount: A:0.42, C:0.14, G:0.11, T:0.33
Consensus pattern (61 bp):
AGATTATTGAAGGCATTTTTTGCCTAAAACACATTCAATAATCTCTATAAAAAATTAAAAG
Found at i:7646014 original size:34 final size:34
Alignment explanation
Indices: 7645929--7646015 Score: 86
Period size: 34 Copynumber: 2.6 Consensus size: 34
7645919 CATTTTTGTT
* * *
7645929 TAAAAATGTCGCTAAATTAGCGGCATGTTTTTGT
1 TAAAAATGTCACTAAATTAACGGCATGTTTTTGA
* * * * *
7645963 TACAAACGCCACCAAATTAATGGCAT-TTTTATGA
1 TAAAAATGTCACTAAATTAACGGCATGTTTT-TGA
7645997 TAAAAATGTCACTAAATTA
1 TAAAAATGTCACTAAATTA
7646016 GCGACTTCTC
Statistics
Matches: 40, Mismatches: 12, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
33 4 0.10
34 36 0.90
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (34 bp):
TAAAAATGTCACTAAATTAACGGCATGTTTTTGA
Found at i:7646066 original size:34 final size:34
Alignment explanation
Indices: 7646028--7646093 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
7646018 GACTTCTCAA
7646028 AGATACAAACGCCACTAAAATAACAGTATTTTCT
1 AGATACAAACGCCACTAAAATAACAGTATTTTCT
* * * * *
7646062 AGATATAAACGTCGCTAATATAACGGTATTTT
1 AGATACAAACGCCACTAAAATAACAGTATTTT
7646094 TCAAATGCAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.30
Consensus pattern (34 bp):
AGATACAAACGCCACTAAAATAACAGTATTTTCT
Found at i:7646113 original size:34 final size:34
Alignment explanation
Indices: 7646075--7646161 Score: 111
Period size: 34 Copynumber: 2.6 Consensus size: 34
7646065 TATAAACGTC
* * *
7646075 GCTAATATAACGGTATTTTTCAAATGCAAATGCT
1 GCTAATATAGCGGTGTTTTTCAAATACAAATGCT
* ** *
7646109 GCTAATATAGTGACGTTTTTCATATACAAATGCT
1 GCTAATATAGCGGTGTTTTTCAAATACAAATGCT
7646143 GCTAATATAGCGGTGTTTT
1 GCTAATATAGCGGTGTTTT
7646162 ATAGAAAAAG
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (34 bp):
GCTAATATAGCGGTGTTTTTCAAATACAAATGCT
Found at i:7647045 original size:18 final size:18
Alignment explanation
Indices: 7647013--7647049 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
7647003 TTTCAAATTT
7647013 TTTAAAATTTATAAAAAA
1 TTTAAAATTTATAAAAAA
7647031 TTTATAAATTT-TAAAAAA
1 TTTA-AAATTTATAAAAAA
7647049 T
1 T
7647050 GCTCAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
TTTAAAATTTATAAAAAA
Found at i:7647174 original size:21 final size:20
Alignment explanation
Indices: 7647148--7647210 Score: 65
Period size: 21 Copynumber: 3.1 Consensus size: 20
7647138 TTTTTAGGAC
*
7647148 TTTTAGAATTATTATAATTAT
1 TTTTAGAATTATTAGAATT-T
*
7647169 TTTTAGAATTTTTAGAA-TT
1 TTTTAGAATTATTAGAATTT
* *
7647188 TTTTAAAATTTTTAGAAGTTT
1 TTTTAGAATTATTAGAA-TTT
7647209 TT
1 TT
7647211 AGATTTTTGT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
19 17 0.46
20 1 0.03
21 19 0.51
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (20 bp):
TTTTAGAATTATTAGAATTT
Found at i:7647348 original size:11 final size:10
Alignment explanation
Indices: 7647168--7647373 Score: 114
Period size: 10 Copynumber: 20.4 Consensus size: 10
7647158 ATTATAATTA
7647168 TTTTTAGAA-
1 TTTTTAGAAT
7647177 TTTTTAGAAT
1 TTTTTAGAAT
*
7647187 TTTTTA-AAA
1 TTTTTAGAAT
*
7647196 TTTTTAGAAG
1 TTTTTAGAAT
*
7647206 TTTTTAGATTT
1 TTTTTAGA-AT
* *
7647217 TTGTTTTGAAG
1 TT-TTTAGAAT
7647228 TTTTTA-AAT
1 TTTTTAGAAT
*
7647237 ATTTTTTGAAT
1 -TTTTTAGAAT
* * *
7647248 TTTCTAAAAA
1 TTTTTAGAAT
* *
7647258 CTTTTAAAAT
1 TTTTTAGAAT
*
7647268 TATTTTAGAAG
1 T-TTTTAGAAT
* *
7647279 TTTTTAAAAA
1 TTTTTAGAAT
* *
7647289 ATTTGAGAAT
1 TTTTTAGAAT
**
7647299 TTTTTAGTTT
1 TTTTTAGAAT
**
7647309 TTTTTTTAAT
1 TTTTTAGAAT
* *
7647319 CTTTTA-AAA
1 TTTTTAGAAT
7647328 TTTTTAGAAT
1 TTTTTAGAAT
7647338 TTTTATAGAAT
1 TTTT-TAGAAT
*
7647349 TTGTTAGAAT
1 TTTTTAGAAT
*
7647359 TTTTCATGAAT
1 TTTTTA-GAAT
7647370 TTTT
1 TTTT
7647374 CTTTTAATGA
Statistics
Matches: 145, Mismatches: 42, Indels: 18
0.71 0.20 0.09
Matches are distributed among these distances:
9 26 0.18
10 82 0.57
11 32 0.22
12 5 0.03
ACGTcount: A:0.32, C:0.02, G:0.09, T:0.57
Consensus pattern (10 bp):
TTTTTAGAAT
Found at i:7647357 original size:21 final size:20
Alignment explanation
Indices: 7647326--7647373 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
7647316 AATCTTTTAA
7647326 AATTTTTAGAATTTTT-ATAG
1 AATTTTTAGAATTTTTCAT-G
7647346 AATTTGTTAGAATTTTTCATG
1 AATTT-TTAGAATTTTTCATG
7647367 AATTTTT
1 AATTTTT
7647374 CTTTTAATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 7 0.27
21 17 0.65
22 2 0.08
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.56
Consensus pattern (20 bp):
AATTTTTAGAATTTTTCATG
Found at i:7647752 original size:18 final size:18
Alignment explanation
Indices: 7647711--7647755 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
7647701 GTATAAAATA
*
7647711 TATATCTAATATAATATT
1 TATATGTAATATAATATT
7647729 TATATGTAATATAATATT
1 TATATGTAATATAATATT
7647747 TATATGTAA
1 TATATGTAA
7647756 ATGATTGTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.49
Consensus pattern (18 bp):
TATATGTAATATAATATT
Found at i:7648398 original size:23 final size:24
Alignment explanation
Indices: 7648367--7648416 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
7648357 ATTTTTATTT
*
7648367 TTTAATA-TTTTTAAAATTTTGAA
1 TTTAATATTTTTTAAAATTTTAAA
* *
7648390 TTTAGTATTTTTTAATATTTTAAA
1 TTTAATATTTTTTAAAATTTTAAA
7648414 TTT
1 TTT
7648417 GTAAAATCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 6 0.26
24 17 0.74
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (24 bp):
TTTAATATTTTTTAAAATTTTAAA
Found at i:7648430 original size:21 final size:20
Alignment explanation
Indices: 7648404--7648462 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
7648394 GTATTTTTTA
7648404 ATATTTTAAATTTGTAAAATC
1 ATATTTTAAATTT-TAAAATC
* *
7648425 ATATTTTTAATTTTTAAATC
1 ATATTTTAAATTTTAAAATC
* **
7648445 AGATTTTATTTTTTAAAA
1 ATATTTTAAATTTTAAAA
7648463 AATTCAATAT
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 19 0.61
21 12 0.39
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.54
Consensus pattern (20 bp):
ATATTTTAAATTTTAAAATC
Found at i:7648445 original size:20 final size:20
Alignment explanation
Indices: 7648404--7648461 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 20
7648394 GTATTTTTTA
* *
7648404 ATATTTTAAATTTGTAAAATC
1 ATATTTTTAATTT-TTAAATC
7648425 ATATTTTTAATTTTTAAATC
1 ATATTTTTAATTTTTAAATC
* *
7648445 AGA-TTTTATTTTTTAAA
1 ATATTTTTAATTTTTAAA
7648462 AAATTCAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.39
20 8 0.24
21 12 0.36
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.55
Consensus pattern (20 bp):
ATATTTTTAATTTTTAAATC
Found at i:7648800 original size:22 final size:22
Alignment explanation
Indices: 7648775--7648817 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
7648765 TAAAAAATTT
*
7648775 ATATGTAGAAAATTTATAAAAG
1 ATATATAGAAAATTTATAAAAG
7648797 ATATATAGAAAATTTATAAAA
1 ATATATAGAAAATTTATAAAA
7648818 TCTTCTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (22 bp):
ATATATAGAAAATTTATAAAAG
Found at i:7648845 original size:17 final size:17
Alignment explanation
Indices: 7648825--7648921 Score: 54
Period size: 18 Copynumber: 5.6 Consensus size: 17
7648815 AAATCTTCTT
7648825 AAAAATAAAAAATT-AA
1 AAAAATAAAAAATTAAA
**
7648841 AAAAATGAAAAGTTTTAAA
1 AAAAAT-AAAA-AATTAAA
* *
7648860 AATAAT-AAAAATTTAA
1 AAAAATAAAAAATTAAA
* * * *
7648876 AAATATAGAAAATTTTAT
1 AAAAATA-AAAAATTAAA
*
7648894 AAAAATCAAAAACTTAAA
1 AAAAAT-AAAAAATTAAA
*
7648912 AACAATAAAA
1 AAAAATAAAA
7648922 TGAAATAAAT
Statistics
Matches: 60, Mismatches: 15, Indels: 11
0.70 0.17 0.13
Matches are distributed among these distances:
16 14 0.23
17 11 0.18
18 27 0.45
19 8 0.13
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.25
Consensus pattern (17 bp):
AAAAATAAAAAATTAAA
Found at i:7648860 original size:18 final size:17
Alignment explanation
Indices: 7648837--7648922 Score: 68
Period size: 18 Copynumber: 4.9 Consensus size: 17
7648827 AAATAAAAAA
7648837 TTAAAAAAATGAAAAGTT
1 TTAAAAAAATGAAAA-TT
*
7648855 TTAAAAATAAT-AAAAAT
1 TTAAAAA-AATGAAAATT
*
7648872 TTAAAAATATAGAAAATT
1 TTAAAAAAAT-GAAAATT
* * **
7648890 TTATAAAAATCAAAAAC
1 TTAAAAAAATGAAAATT
7648907 TTAAAAACAAT-AAAAT
1 TTAAAAA-AATGAAAAT
7648923 GAAATAAATA
Statistics
Matches: 54, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
16 2 0.04
17 22 0.41
18 27 0.50
19 3 0.06
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.28
Consensus pattern (17 bp):
TTAAAAAAATGAAAATT
Found at i:7648876 original size:35 final size:33
Alignment explanation
Indices: 7648825--7648922 Score: 108
Period size: 35 Copynumber: 2.8 Consensus size: 33
7648815 AAATCTTCTT
7648825 AAAAATAAAAAATTAAAAAAATGAAAAGTTTTAA
1 AAAAATAAAAAATTAAAAAAATGAAAA-TTTTAA
* * *
7648859 AAATAATAAAAATTTAAAAATATAGAAAATTTTAT
1 AAA-AATAAAAAATTAAAAAAAT-GAAAATTTTAA
*
7648894 AAAAATCAAAAACTTAAAAACAAT-AAAAT
1 AAAAAT-AAAAAATTAAAAA-AATGAAAAT
7648923 GAAATAAATA
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
34 11 0.20
35 37 0.67
36 7 0.13
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (33 bp):
AAAAATAAAAAATTAAAAAAATGAAAATTTTAA
Found at i:7649140 original size:22 final size:21
Alignment explanation
Indices: 7649115--7649157 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7649105 TGACTTTGAA
*
7649115 AAATTAAAATATTTTAAAAAAT
1 AAATT-AAATAGTTTAAAAAAT
*
7649137 AAATTTAATAGTTTAAAAAAT
1 AAATTAAATAGTTTAAAAAAT
7649158 GTAAAAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (21 bp):
AAATTAAATAGTTTAAAAAAT
Found at i:7650201 original size:3 final size:3
Alignment explanation
Indices: 7650193--7650223 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
7650183 CTTTATCAAC
*
7650193 ATA ATA ATA ATA ATA ATA ATA AGA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7650224 GAAGCAAAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:7651258 original size:126 final size:126
Alignment explanation
Indices: 7651018--7651283 Score: 329
Period size: 126 Copynumber: 2.1 Consensus size: 126
7651008 CAAAATGTTC
* * *
7651018 TTGAAGGCATTTTTGACCAAAATCACTTTCAATAATCCCTCATAAAAATTTATTATGTGGATTAT
1 TTGAAGGCATTTTTGACCAAAACCACCTTCAATAATCCCTCATAAAAATTTATTATGTGAATTAT
* * * *** * *
7651083 TAAAGGCATTTTAGGCCAAAAACGCCTTAAAGAATCTGTTTTAACTTTTTTGTATAGATTA
66 TAAAGACACTTTAGGCCAAAAACGCCTTAAAGAATCTATAGAAAATTTTTTCTATAGATTA
* *
7651144 TTGAAGGTATTTTTGACCAAAACCACCTTCAATAATCCCTCATATAAATTTATTGAT-TGAATTA
1 TTGAAGGCATTTTTGACCAAAACCACCTTCAATAATCCCTCATAAAAATTTATT-ATGTGAATTA
* * * * * *
7651208 TTAAAGACGCTTTCGGCCAAAAATGCCTTCAATAAT-TCATAGAAAATTTTTTCTATGGATTA
65 TTAAAGACACTTTAGGCCAAAAACGCCTTAAAGAATCT-ATAGAAAATTTTTTCTATAGATTA
7651270 TTGAAGGCATTTTT
1 TTGAAGGCATTTTT
7651284 CTGTCGAAAA
Statistics
Matches: 118, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
125 1 0.01
126 115 0.97
127 2 0.02
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (126 bp):
TTGAAGGCATTTTTGACCAAAACCACCTTCAATAATCCCTCATAAAAATTTATTATGTGAATTAT
TAAAGACACTTTAGGCCAAAAACGCCTTAAAGAATCTATAGAAAATTTTTTCTATAGATTA
Found at i:7656077 original size:23 final size:23
Alignment explanation
Indices: 7656051--7656122 Score: 117
Period size: 23 Copynumber: 3.1 Consensus size: 23
7656041 TACGAATTAT
7656051 ATTTTGAAATTTACACAATGAAC
1 ATTTTGAAATTTACACAATGAAC
* *
7656074 ATTTTGGAATTTACACAATGAAT
1 ATTTTGAAATTTACACAATGAAC
*
7656097 ATTTTGAAATTTACAGAATGAAC
1 ATTTTGAAATTTACACAATGAAC
7656120 ATT
1 ATT
7656123 GTTGTGTTAA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.42, C:0.10, G:0.11, T:0.38
Consensus pattern (23 bp):
ATTTTGAAATTTACACAATGAAC
Found at i:7656647 original size:20 final size:22
Alignment explanation
Indices: 7656616--7656660 Score: 76
Period size: 21 Copynumber: 2.1 Consensus size: 22
7656606 TACCCTAACA
7656616 TTAATAACATAAA-AAAATTAC
1 TTAATAACATAAATAAAATTAC
7656637 TTAAT-ACATAAATAAAATTAC
1 TTAATAACATAAATAAAATTAC
7656658 TTA
1 TTA
7656661 TGAAGAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.58, C:0.09, G:0.00, T:0.33
Consensus pattern (22 bp):
TTAATAACATAAATAAAATTAC
Found at i:7660646 original size:187 final size:185
Alignment explanation
Indices: 7660337--7661007 Score: 701
Period size: 187 Copynumber: 3.7 Consensus size: 185
7660327 CTAGAAGTCA
* * *
7660337 CCTTTAATAATCTCAAAATTTTTTAAAAGAAAAT-TATTGAAGGCATTTGCTATCAAAAAATA-C
1 CCTTTAATAATCTCAAAA-TTTTTAAAAGAAAATATA-TGAAGGCGTTTGCTATAAAAAAAAAGC
* * *
7660400 CTTCAATAATTATGTACTAAACTAATAGGAATTATTAAAGGCATTTTTCTGGAATAAATGCCTTC
64 CTTCAATAATTATGTACTAAACTAATAGGAATTAGTAAAGGCATTTTCCTAGAATAAATGCCTTC
* * *
7660465 TCTAACCTTTTAAAATTTAAGTACTAATATATTGAAGGTATTTTTTAGTAAAAGACG
129 TCTAACCTTTTAAAATTTAAGTACTGATATATTGAAGGTGTTTTTCAGTAAAAGACG
* *
7660522 CTTTTAATAATC-CTAAAATTTTTTAAAAGAAAATATATGAAGGTGTTTGCTATAAAAAAAAAAG
1 CCTTTAATAATCTC-AAAA-TTTTTAAAAGAAAATATATGAAGGCGTTTGCTAT-AAAAAAAAAG
* * * *
7660586 CCTTCAATAATTATGTACTAAACTAATTGGAATTATTAAAGGCATTTTTCTAGGATAAATGCCTT
63 CCTTCAATAATTATGTACTAAACTAATAGGAATTAGTAAAGGCATTTTCCTAGAATAAATGCCTT
* * * * *
7660651 CTTTAACCTTTTAAAATTTAAGTACTGATATACTAAAGGCGTTTTGCAGTAGAAA-ACG
128 CTCTAACCTTTTAAAATTTAAGTACTGATATATTGAAGGTGTTTTTCAGTA-AAAGACG
* * * * *
7660709 CCTTTAATAATCTCAAAATTTTTAAAA-AATATATATAAAGGCGTTTG-T-TATAAAAAATGTCT
1 CCTTTAATAATCTCAAAATTTTTAAAAGAAAATATATGAAGGCGTTTGCTATAAAAAAAAAGCCT
* * * * ** *
7660771 TCAATAATTATGTACAAAATTTAA-AAGAATTAGTGAAGGCATTTTCCTAGAATAAACACCTTCA
66 TCAATAATTATGTACTAAA-CTAATAGGAATTAGTAAAGGCATTTTCCTAGAATAAATGCCTTCT
* * * *
7660835 CTAACC-------ATCTTGAGTATTGGTATATTGAAGGTGTTGTTCAGTAAAAGACG
130 CTAACCTTTTAAAAT-TTAAGTACTGATATATTGAAGGTGTTTTTCAGTAAAAGACG
* * * * *
7660885 CCTTTAATAATCCCAAAATTTTTAGAAAGAAATTAT-TGAAAGCGGTTGTTATAAAAAAAAATGC
1 CCTTTAATAATCTCAAAATTTTTA-AAAGAAAATATATGAAGGCGTTTGCTATAAAAAAAAA-GC
* * * * *
7660949 CTTCAGTAATTATGTACATAAATTAA-ATGTAATCAGTGAAGGCATTTTCCTAGAATAAA
64 CTTCAATAATTATGTAC-TAAACTAATA-GGAATTAGTAAAGGCATTTTCCTAGAATAAA
7661008 CACATTCACT
Statistics
Matches: 413, Mismatches: 57, Indels: 36
0.82 0.11 0.07
Matches are distributed among these distances:
175 5 0.01
176 52 0.13
177 12 0.03
178 6 0.01
179 8 0.02
180 22 0.05
181 31 0.08
182 64 0.15
183 4 0.01
184 2 0.00
185 62 0.15
186 18 0.04
187 123 0.30
188 4 0.01
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.35
Consensus pattern (185 bp):
CCTTTAATAATCTCAAAATTTTTAAAAGAAAATATATGAAGGCGTTTGCTATAAAAAAAAAGCCT
TCAATAATTATGTACTAAACTAATAGGAATTAGTAAAGGCATTTTCCTAGAATAAATGCCTTCTC
TAACCTTTTAAAATTTAAGTACTGATATATTGAAGGTGTTTTTCAGTAAAAGACG
Found at i:7660907 original size:363 final size:366
Alignment explanation
Indices: 7660337--7661007 Score: 827
Period size: 363 Copynumber: 1.8 Consensus size: 366
7660327 CTAGAAGTCA
*
7660337 CCTTTAATAATCTCAAAATTTTTTAAAAGAAAATTATTGAAGGCATTTGCTATCAAAAAATACCT
1 CCTTTAATAATCTCAAAATTTTTTAAAAGAAAATTATTAAAGGCATTTGCTATCAAAAAATACCT
* * * * * ** *
7660402 TCAATAATTATGTACTAAACTAATAGGAATTATTAAAGGCATTTTTCTGGAATAAATGCCTTCTC
66 TCAATAATTATGTACAAAACTAATAAGAATTAGTAAAGGCATTTTCCTAGAATAAACACCTTCAC
* * *
7660467 TAACCTTTTAAAATTTAAGTACTAATATATTGAAGGTATTTTTTAGTAAAAGACGCTTTTAATAA
131 TAACC---T---ATTTAAGTACTAATATATTGAAGGTATTGTTCAGTAAAAGACGCCTTTAATAA
* * * *
7660532 TCCTAAAATTTTTTA-AAAGAAAATATATGAAGGTGTTTGCTATAAAAAAAAAAGCCTTCAATAA
190 TCCCAAAA-TTTTTAGAAAGAAAATAT-TGAAAGCGGTTGCTATAAAAAAAAAAGCCTTCAATAA
* * * * *
7660596 TTATGTAC-TAAACTAATTGGAATTATTAAAGGCATTTTTCTAGGATAAATGCCTTCTTTAACCT
253 TTATGTACATAAACTAAATGGAATCAGTAAAGGCATTTTCCTAGAATAAATGCCTTCTTTAACCT
7660660 TTTAAAATTTAAGTACTGATATACTAAAGGCGTTTTGCAGTAGAAAACG
318 TTTAAAATTTAAGTACTGATATACTAAAGGCGTTTTGCAGTAGAAAACG
* * * **
7660709 CCTTTAATAATCTCAAAA-TTTTTAAAA-AATA-TATATAAAGGCGTTTGTTAT-AAAAAATGTC
1 CCTTTAATAATCTCAAAATTTTTTAAAAGAAAATTAT-TAAAGGCATTTGCTATCAAAAAATACC
* *
7660770 TTCAATAATTATGTACAAAATTTAA-AAGAATTAGTGAAGGCATTTTCCTAGAATAAACACCTTC
65 TTCAATAATTATGTACAAAA-CTAATAAGAATTAGTAAAGGCATTTTCCTAGAATAAACACCTTC
* * ** *
7660834 ACTAACC-ATCTTGAGTATTGGTATATTGAAGGTGTTGTTCAGTAAAAGACGCCTTTAATAATCC
129 ACTAACCTAT-TTAAGTACTAATATATTGAAGGTATTGTTCAGTAAAAGACGCCTTTAATAATCC
* * * *
7660898 CAAAATTTTTAGAAAGAAATTATTGAAAGCGGTTGTTATAAAAAAAAATGCCTTCAGTAATTATG
193 CAAAATTTTTAGAAAGAAAATATTGAAAGCGGTTGCTATAAAAAAAAAAGCCTTCAATAATTATG
* * *
7660963 TACATAAATTAAATGTAATCAGTGAAGGCATTTTCCTAGAATAAA
258 TACATAAACTAAATGGAATCAGTAAAGGCATTTTCCTAGAATAAA
7661008 CACATTCACT
Statistics
Matches: 254, Mismatches: 40, Indels: 19
0.81 0.13 0.06
Matches are distributed among these distances:
362 47 0.19
363 93 0.37
369 68 0.27
370 19 0.07
371 9 0.04
372 18 0.07
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.35
Consensus pattern (366 bp):
CCTTTAATAATCTCAAAATTTTTTAAAAGAAAATTATTAAAGGCATTTGCTATCAAAAAATACCT
TCAATAATTATGTACAAAACTAATAAGAATTAGTAAAGGCATTTTCCTAGAATAAACACCTTCAC
TAACCTATTTAAGTACTAATATATTGAAGGTATTGTTCAGTAAAAGACGCCTTTAATAATCCCAA
AATTTTTAGAAAGAAAATATTGAAAGCGGTTGCTATAAAAAAAAAAGCCTTCAATAATTATGTAC
ATAAACTAAATGGAATCAGTAAAGGCATTTTCCTAGAATAAATGCCTTCTTTAACCTTTTAAAAT
TTAAGTACTGATATACTAAAGGCGTTTTGCAGTAGAAAACG
Found at i:7661008 original size:181 final size:176
Alignment explanation
Indices: 7660697--7661019 Score: 458
Period size: 181 Copynumber: 1.8 Consensus size: 176
7660687 AGGCGTTTTG
* *
7660697 CAGTAGAAAACGCCTTTAATAATCTCAAAATTTTTAAAAAATATATATAAAGGCGTTTGTTATAA
1 CAGTAGAAAACGCCTTTAATAATCCCAAAATTTTTAAAAAATATATATAAAGGCGGTTGTTATAA
* *
7660762 AAAATGTCTTCAATAATTATGTACAAAATTTAAAAGAATTAGTGAAGGCATTTTCCTAGAATAAA
66 AAAATGCCTTCAATAATTATGTACAAAATTTAAAAGAATCAGTGAAGGCATTTTCCTAGAATAAA
*
7660827 CACCTTCACTAACCATCTTGAGTATTGGTATATTGAAGGTGTTGTT
131 CACATTCACTAACCATCTTGAGTATTGGTATATTGAAGGTGTTGTT
7660873 CAGTA-AAAGACGCCTTTAATAATCCCAAAATTTTTAGAAAGAA-AT-TATTGAAA-GCGGTTGT
1 CAGTAGAAA-ACGCCTTTAATAATCCCAAAATTTTTA-AAA-AATATATA-T-AAAGGCGGTTGT
* *
7660934 TATAAAAAAAAATGCCTTCAGTAATTATGTACATAAA-TTAAATGTAATCAGTGAAGGCATTTTC
61 TAT---AAAAAATGCCTTCAATAATTATGTACA-AAATTTAAAAG-AATCAGTGAAGGCATTTTC
7660998 CTAGAATAAACACATTCACTAA
121 CTAGAATAAACACATTCACTAA
7661020 TCATAAAAAA
Statistics
Matches: 130, Mismatches: 7, Indels: 15
0.86 0.05 0.10
Matches are distributed among these distances:
175 3 0.02
176 33 0.25
177 16 0.12
178 5 0.04
180 31 0.24
181 42 0.32
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (176 bp):
CAGTAGAAAACGCCTTTAATAATCCCAAAATTTTTAAAAAATATATATAAAGGCGGTTGTTATAA
AAAATGCCTTCAATAATTATGTACAAAATTTAAAAGAATCAGTGAAGGCATTTTCCTAGAATAAA
CACATTCACTAACCATCTTGAGTATTGGTATATTGAAGGTGTTGTT
Found at i:7669119 original size:134 final size:134
Alignment explanation
Indices: 7668859--7669166 Score: 347
Period size: 134 Copynumber: 2.3 Consensus size: 134
7668849 TTGTTACCAG
* * * * *
7668859 CAAATGCCACCAAAGCAATGTTATTTTTCTCATAAAAACACTACTAAATTAGTAGTATCTGAAAG
1 CAAATGCCACAAAAGCAATGATATTTTTCTCATAAAAACACTACTAAATTAGTAGCATCTCAAAA
* * * *
7668924 AGAAAAATGCTGCTAATATAGAGGTATTTTCAAATACAAATGCCTCTAATATAGCGACGTTTTTA
66 AGAAAAATGCCGCTAATATAGAAGCATTTTCAAATACAAATGCCTCTAAAATAGCGACGTTTTTA
*
7668989 GTTA
131 ATTA
* * * * *
7668993 TAAATACCACTAAAGCAATGATATTTTTCTCATAAAAATA-TCACTAAATTAG-AGGCGTCTCAA
1 CAAATGCCACAAAAGCAATGATATTTTTCTCATAAAAACACT-ACTAAATTAGTA-GCATCTCAA
* * *
7669056 AAATACAAATGCCGCTAATATAGAAGCATTTTCATATACAAATGCCTCTAAAATGAAG-G-CGTT
64 AAAGAAAAATGCCGCTAATATAGAAGCATTTTCAAATACAAATGCCTCTAAAAT--AGCGACGTT
7669119 TTTAATTA
127 TTTAATTA
* *
7669127 CAAACGCCACCAAAAGCAAT-AGCATTTTTCTCATAAAAAC
1 CAAATGCCA-CAAAAGCAATGA-TATTTTTCTCATAAAAAC
7669167 GTCATTTTTT
Statistics
Matches: 145, Mismatches: 23, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
133 2 0.01
134 115 0.79
135 26 0.18
136 2 0.01
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.30
Consensus pattern (134 bp):
CAAATGCCACAAAAGCAATGATATTTTTCTCATAAAAACACTACTAAATTAGTAGCATCTCAAAA
AGAAAAATGCCGCTAATATAGAAGCATTTTCAAATACAAATGCCTCTAAAATAGCGACGTTTTTA
ATTA
Found at i:7669864 original size:15 final size:15
Alignment explanation
Indices: 7669834--7669874 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 15
7669824 ATTCATATTT
7669834 TAAATAATATATTTAAA
1 TAAA-AATA-ATTTAAA
7669851 TAAAAATAATTTAAA
1 TAAAAATAATTTAAA
*
7669866 TATAAATAA
1 TAAAAATAA
7669875 ATTATTATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 15 0.65
16 4 0.17
17 4 0.17
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAAAATAATTTAAA
Found at i:7671759 original size:25 final size:26
Alignment explanation
Indices: 7671724--7671775 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
7671714 TTTTAATAAC
7671724 CATATATTTGATTACCAAAA-CTTTTA
1 CATATATTTGATTA-CAAAATCTTTTA
7671750 CATA-ATTTGATTACAAAATCTTTTA
1 CATATATTTGATTACAAAATCTTTTA
7671775 C
1 C
7671776 GTAGTAGGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 5 0.20
25 16 0.64
26 4 0.16
ACGTcount: A:0.38, C:0.15, G:0.04, T:0.42
Consensus pattern (26 bp):
CATATATTTGATTACAAAATCTTTTA
Found at i:7673263 original size:2 final size:2
Alignment explanation
Indices: 7673256--7673282 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7673246 AAGCATGTAA
7673256 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7673283 GATTTCAGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7674730 original size:22 final size:22
Alignment explanation
Indices: 7674686--7674727 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
7674676 TTAATTTTAA
*
7674686 AAAATATCAAAAATTATATAAT
1 AAAATATCAAAAATTATAAAAT
*
7674708 AAAATAT-AATAATTATAAAA
1 AAAATATCAAAAATTATAAAA
7674728 ATATATATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (22 bp):
AAAATATCAAAAATTATAAAAT
Found at i:7682150 original size:2 final size:2
Alignment explanation
Indices: 7682143--7682168 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7682133 TGTAAGGATT
7682143 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
7682169 AAAGGGTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7687102 original size:76 final size:77
Alignment explanation
Indices: 7686976--7687131 Score: 251
Period size: 76 Copynumber: 2.0 Consensus size: 77
7686966 AAACAAAGAA
7686976 TAAAAATCAAATATTAACCTTCAGATTATGAGATGGTAAATCAATTAAAC-TTTTTTCCTTATTT
1 TAAAAATCAAATATTAACCTTCAGATTATGAGATGGTAAATCAATTAAACTTTTTTTCCTTATTT
7687040 GGATATAATTTC
66 GGATATAATTTC
* * * *
7687052 TAAAAATCTAATATTAACCTTTAGATTATGAGATGGTAAATCAATTAAACTTTTTTTTTCTTTTT
1 TAAAAATCAAATATTAACCTTCAGATTATGAGATGGTAAATCAATTAAAC-TTTTTTTCCTTATT
*
7687117 TGGCTATAATTTC
65 TGGATATAATTTC
7687130 TA
1 TA
7687132 CGTAAATTTA
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
76 48 0.66
78 25 0.34
ACGTcount: A:0.36, C:0.11, G:0.09, T:0.44
Consensus pattern (77 bp):
TAAAAATCAAATATTAACCTTCAGATTATGAGATGGTAAATCAATTAAACTTTTTTTCCTTATTT
GGATATAATTTC
Found at i:7690482 original size:839 final size:837
Alignment explanation
Indices: 7688733--7692088 Score: 5496
Period size: 839 Copynumber: 4.0 Consensus size: 837
7688723 GGCAGCCCAT
* * *
7688733 TGTAGTAATTCCTTCTTTTATATGTGCTGATGCATTT-GTAAATTCCTGCCCTTTTGTACTGGTT
1 TGTAGTAGTTCCTTCTTTTATATGTGCTGATGCATTTAATAAATCCCTGCCCTTTTGTACTGGTT
* *
7688797 TTGCCGTTGGATGTATGATCTGGATGGTCGTAGCTGAGGTTCTCCCTGATGCATTTAAGGTGACT
66 TTGCCATTGGATGTATGATCTGGATGGTCGTAGCTGAGGTTCTCCCTGATGCATTTAAGGGGACT
* ** * * *
7688862 GCGCTTA-TTGCGCTTAAAATACATTTTTGAACATTCAAGAATACGGATTTTCCTCTGCAATAAA
131 GCAC-TAGTTGCATTTAAAATACATTTTTGAATATTCAAGAATACAGATTTTCTTCTGCAATAAA
7688926 TCTTTCAATATCTTTTGTTCTATTCTGCTTTGCATCCTATCAAGAACACCTTCATTGGAAATTTT
195 TCTTTCAATATCTTTTGTTCTATTCTGCTTTGCATCCTATCAAGAACACCTTCATTGGAAATTTT
7688991 CAAATCTAGGTTGCTTCATAATCTAAAGAACTTCTCAATCTATGCTAATGGATAACCACTATTGC
260 CAAATCTAGGTTGCTTCATAATCTAAAGAACTTCTCAATCTATGCTAATGGATAACCACTATTGC
* *
7689056 CATACTCTTCAGTTTCTTTCTTGTGCAAAGCCTCAAAAGCTAAAACAACTTTATTTGAACAGCAA
325 CATCCTCTTCAGTTTCTTTCTTGCGCAAAGCCTCAAAAGCTAAAACAACTTTATTTGAACAGCAA
* * *
7689121 ATTGTAAGAGATCAATCTTGTTTGACCATGTTTTATTCTTTTAAGATTTCTTCTGCTCTGGAGGC
390 ATTGTAAGAGATTAATCTTGTTTGACCATGTTTTATTTTTTTAAGATTTCTTCTGCTCTGGAGAC
* *
7689186 ATTATGTCTTCCCCCCCTCCCCCTCTTTTTTTTTTTACAACAGGAAGCTTCGCCAACTCAAGCGG
455 ATTATGTCTTCCCTCCCTCCCCCTCTTTTTTTTTTTACAACAGGAAGCTTCGCCAACTCGAGCGG
7689251 CATCAGCAGCGACACTTTCAGTAGCATTCATGGAAGCACTAAGCACTATGTTCCAGAACTTCAGT
520 CATCAGCAGCGACACTTTCAGTAGCATTCATGGAAGCACTAAGCACTATGTTCCAGAACTTCAGT
*
7689316 CATGACTACAAGTGAGTAAATGCAACAACTTTGGGTTTCTTTGCTATGCTCTGTCCTACATTTTG
585 CATGACTACAAGTGAGTAAATGCAACAACTTTGGGTTTCTTTGCTATGCTCTATCCTACATTTTG
7689381 CTGGAGTTATAACTTTTGTATGTTAAAAATTATTTCAAATTTTGTTTTAACAATATTATACCTTT
650 CTGGAGTTATAACTTTTGTATGTTAAAAATTATTTCAAATTTTGTTTTAACAATATTATACCTTT
* *
7689446 TTATCTGTTTGCGTATATATTCCATTTTCTAGAACTCTGGTCATAGCTTTCTGTGCATGATATAA
715 TTGTCTGTTTGCGTATATATTCCATTTTCTAGAACTCTGGTCATAGCTTTCTGTGAATGATATAA
**
7689511 CCAAC-TAAGTTGATTCAGACGGATTGTGCCTGATGTAGCTTGTATTGGGCTTGATATG
780 CC-ACGTAAGTTGATTCAGACGGATTGTGCCTGATGTAGCTTGTATCAGGCTTGATATG
7689569 TGTAGTAGTTCCTTCTTTTATATGTGCTGATGCATTTAATAAATCCCTGCCCTTTTTGTACTGGT
1 TGTAGTAGTTCCTTCTTTTATATGTGCTGATGCATTTAATAAATCCCTGCCC-TTTTGTACTGGT
*
7689634 TTTGCCATTGGATGTATGATCTGGATGGTCGTAGCTGAGGTTCTCCCTGATGCATTTAAGGTGAC
65 TTTGCCATTGGATGTATGATCTGGATGGTCGTAGCTGAGGTTCTCCCTGATGCATTTAAGGGGAC
* * *
7689699 TGCGCTTA-TTGCATTTAACATACATTTTTGAATATTCAAGAATACGGATTTTCTTCTGCAATAA
130 TGCAC-TAGTTGCATTTAAAATACATTTTTGAATATTCAAGAATACAGATTTTCTTCTGCAATAA
*
7689763 ATCTTTCAATATCTTTTGTTCTATTCTGCTTTGCATCCTATCAAGAGCACCTTCATTGGAAATTT
194 ATCTTTCAATATCTTTTGTTCTATTCTGCTTTGCATCCTATCAAGAACACCTTCATTGGAAATTT
*
7689828 TCAAATCTAGGTTGCTTCATAATCTAAAGAACTTCTCAATATATGCTAATGGATAACCACTATTG
259 TCAAATCTAGGTTGCTTCATAATCTAAAGAACTTCTCAATCTATGCTAATGGATAACCACTATTG
7689893 CCATCCTCTTCAGTTTCTTTCTTGCGCAAAGCCTCAAAAGCTAAAACAACTTTATTTGAACAGCA
324 CCATCCTCTTCAGTTTCTTTCTTGCGCAAAGCCTCAAAAGCTAAAACAACTTTATTTGAACAGCA
* *
7689958 AATTGTAAGAGATTAATCTTGTTTGACCATGTTTTATTTTTTTAAGATTTCTTCTGCTTTGGAGG
389 AATTGTAAGAGATTAATCTTGTTTGACCATGTTTTATTTTTTTAAGATTTCTTCTGCTCTGGAGA
*
7690023 CATTATGTCTTCCCTCCCTCCCCATCATTTTTTTTTTTACAACAGGAAGCTTCGCCAACTCGAGC
454 CATTATGTCTTCCCTCCCTCCCCCTC-TTTTTTTTTTTACAACAGGAAGCTTCGCCAACTCGAGC
*
7690088 GGCATCAGCAGCGACACTTTCAGTAGCATTGATGGAAGCACTAAGCACTATGTTCCAGAACTTCA
518 GGCATCAGCAGCGACACTTTCAGTAGCATTCATGGAAGCACTAAGCACTATGTTCCAGAACTTCA
*
7690153 GTCATGACTACAAGTGAGTAAATGCAACAACTTTGGGTTCCTTTGCTATGCTCTATCCTACATTT
583 GTCATGACTACAAGTGAGTAAATGCAACAACTTTGGGTTTCTTTGCTATGCTCTATCCTACATTT
*
7690218 TGCTGGAGTTATAACTTTTGTATGTTAAAAATTATTTCAAATTTTGTTTTAACAATATTATAGCT
648 TGCTGGAGTTATAACTTTTGTATGTTAAAAATTATTTCAAATTTTGTTTTAACAATATTATACCT
*
7690283 TTTTGTCTGTTTGCGTATATATTCCATTTTCTAGAACTTTGGTCATAGCTTTCTGTGAATGATAT
713 TTTTGTCTGTTTGCGTATATATTCCATTTTCTAGAACTCTGGTCATAGCTTTCTGTGAATGATAT
*
7690348 AACCACGTAAGTTGATTCAGACGGATTGTGCCTGATGTAGCTTGTATCAGGCTTGATGTG
778 AACCACGTAAGTTGATTCAGACGGATTGTGCCTGATGTAGCTTGTATCAGGCTTGATATG
*
7690408 TGTAGTAGTTCCTTCTTTTATATGTGCTGATGCATTTAATAAATCCCTGCTCTTTTTGTACTGGT
1 TGTAGTAGTTCCTTCTTTTATATGTGCTGATGCATTTAATAAATCCCTGC-CCTTTTGTACTGGT
**
7690473 TGCGCCATTGGATGTATGATCTGGATGGTCGTAGCTGAGGTTCTCCCTGATGCATTTAAGGGGAC
65 TTTGCCATTGGATGTATGATCTGGATGGTCGTAGCTGAGGTTCTCCCTGATGCATTTAAGGGGAC
7690538 TGCACTAGTTGCATTTAAAATACATTTTTGAATATTCAAGAATACAGATTTTCTTCTGCAATAAA
130 TGCACTAGTTGCATTTAAAATACATTTTTGAATATTCAAGAATACAGATTTTCTTCTGCAATAAA
*
7690603 TCTTTCAATATCTTTTGTTCTATTCTGCTTTGCATCCTATGAAGAACACCTTCATTGGAAATTTT
195 TCTTTCAATATCTTTTGTTCTATTCTGCTTTGCATCCTATCAAGAACACCTTCATTGGAAATTTT
*
7690668 CAAATCTAGGTTGCTTCATAATCTAAAGAACTTCTCAATCTATGCCAATGGATAACCACTATTGC
260 CAAATCTAGGTTGCTTCATAATCTAAAGAACTTCTCAATCTATGCTAATGGATAACCACTATTGC
* *
7690733 CATCCTCTTCAGTTTCTTTCTTGCGCATAG---C-----CT--AACAACTTTATTTGAACAGTAA
325 CATCCTCTTCAGTTTCTTTCTTGCGCAAAGCCTCAAAAGCTAAAACAACTTTATTTGAACAGCAA
*
7690788 ATTGTAAGAGATTAATCTTGTTTGACCATGTTTTATCTTTTTAAGATTTCTTCTGCTCTGGAGAC
390 ATTGTAAGAGATTAATCTTGTTTGACCATGTTTTATTTTTTTAAGATTTCTTCTGCTCTGGAGAC
* * * *
7690853 ATTATGTCTTCCCTCCCCCCCCCCCTCCTCTTTTTTTTTTTTACAATAGTAAGCTTGGCCAACTC
455 ATTATGTCTTCCCT----CCCTCCC-CCTC-TTTTTTTTTTTACAACAGGAAGCTTCGCCAACTC
*
7690918 GAGCGGCATCAGCAGCGACACTTTCAGTAGCATTCATGGAAGCACTAAGCACTATGTCCCAGAAC
514 GAGCGGCATCAGCAGCGACACTTTCAGTAGCATTCATGGAAGCACTAAGCACTATGTTCCAGAAC
* *
7690983 -TCAGTCATG---AC---T--G--CATGCAACAAGTTTGGGTTTCTTTGCTATGCTCTATCCTAC
579 TTCAGTCATGACTACAAGTGAGTAAATGCAACAACTTTGGGTTTCTTTGCTATGCTCTATCCTAC
7691037 ATTTTGCTGGAGTTATAACTTTTGTATGTTAAAAATTATTTCAAATTTTGTTTTAACAATATTAT
644 ATTTTGCTGGAGTTATAACTTTTGTATGTTAAAAATTATTTCAAATTTTGTTTTAACAATATTAT
* *
7691102 AGCTTTTTGTCTGTTTGCGTATATATTCCATTTTCTAGAACTTTGGTCATAGCTTTCTGTGAATG
709 ACCTTTTTGTCTGTTTGCGTATATATTCCATTTTCTAGAACTCTGGTCATAGCTTTCTGTGAATG
7691167 ATATAACCACGTAAGTTGATTCAGACGGATTGTGCCTGATGTAGCTTGTATCAGGCTTGATATG
774 ATATAACCACGTAAGTTGATTCAGACGGATTGTGCCTGATGTAGCTTGTATCAGGCTTGATATG
*
7691231 TGTAGTAGTTCCTTCTTTTATATGTGCTGATGCATTTAATAAATTCCTGCCCTTTTGTACTGGTT
1 TGTAGTAGTTCCTTCTTTTATATGTGCTGATGCATTTAATAAATCCCTGCCCTTTTGTACTGGTT
** *
7691296 TTGCTGTTGAATGTATGATCTGGATGGTCGTAGCTGAGGTTCTCCCTGATGCATTTAAGGGGACT
66 TTGCCATTGGATGTATGATCTGGATGGTCGTAGCTGAGGTTCTCCCTGATGCATTTAAGGGGACT
7691361 GCACTAGTTGCATTTAAAATACATTTTTGAATATTCAAGAATACAGATTTTCTTCTGCAATAAAT
131 GCACTAGTTGCATTTAAAATACATTTTTGAATATTCAAGAATACAGATTTTCTTCTGCAATAAAT
* *
7691426 CTTTCAATATCTTTTGTTCTATTCTGCTTTGCATCCTATGAAGAACACCTTCATTGGAAATTTCC
196 CTTTCAATATCTTTTGTTCTATTCTGCTTTGCATCCTATCAAGAACACCTTCATTGGAAATTTTC
7691491 AAATCTAGGTTGCTTCATAATCTAAAGAACTTCTCAATCTATGCTAATGGATAACCACTATTGCC
261 AAATCTAGGTTGCTTCATAATCTAAAGAACTTCTCAATCTATGCTAATGGATAACCACTATTGCC
*
7691556 ATCCTCTTCAGTTTCTTTCTTGCGCAAAGACT-AAAAGGCTAAAACAACTTTATTTGAACAGCAA
326 ATCCTCTTCAGTTTCTTTCTTGCGCAAAGCCTCAAAA-GCTAAAACAACTTTATTTGAACAGCAA
* * *
7691620 ATTGTAAAGAGATTAATCATGTTTGACCGTGTTTTATTTTTCTAAGATTTCTTCTGCTCTGGAGA
390 ATTGT-AAGAGATTAATCTTGTTTGACCATGTTTTATTTTTTTAAGATTTCTTCTGCTCTGGAGA
**
7691685 CATTATGTCTTCCCTTCCCTCCCCCCCCCCCCCCCCCCTCCCCTCTTTTTTTTTTACAATGGGAA
454 CATTATGTCTTCCC-TCCCT-------------CCCCCT---CT-TTTTTTTTTTACAACAGGAA
* *
7691750 GCTTGGCCAACTCGAGCGGCATCAGCAGCTACACTTTCAGTAGCATTCATGGAAGCACTAAGCAC
501 GCTTCGCCAACTCGAGCGGCATCAGCAGCGACACTTTCAGTAGCATTCATGGAAGCACTAAGCAC
7691815 TATGTTCCAGAACTTCAGTCATGACTACAAGTGAGTAAATGCAACAAC-TTGGGTTTCTTTGCTA
566 TATGTTCCAGAACTTCAGTCATGACTACAAGTGAGTAAATGCAACAACTTTGGGTTTCTTTGCTA
*
7691879 TGCTCTATCCTACATGTTGCTGGAGTCTATAACTTTTTGTATGTT-AAAA-TATTTCAAATTTTG
631 TGCTCTATCCTACATTTTGCTGGAGT-TATAAC-TTTTGTATGTTAAAAATTATTTCAAATTTTG
* * * *
7691942 TTGTAACGATTATTATACCTTTTT-TCT-ATTGCCGTATATATTCCATTTCCTAGAACTCTGGTC
694 TTTTAAC-AATATTATACCTTTTTGTCTGTTTG-CGTATATATTCCATTTTCTAGAACTCTGGTC
* *
7692005 ATAGCTTTCTGTGCATGATATGACCACGTAAGTTGATTCAGACGGATTGTGCCTGATGTAGCTTG
757 ATAGCTTTCTGTGAATGATATAACCACGTAAGTTGATTCAGACGGATTGTGCCTGATGTAGCTTG
7692070 TATCAGGCTTGATATG
822 TATCAGGCTTGATATG
7692086 TGT
1 TGT
7692089 GCTTGTTGCC
Statistics
Matches: 2376, Mismatches: 88, Indels: 93
0.93 0.03 0.04
Matches are distributed among these distances:
822 295 0.12
823 280 0.12
825 1 0.00
827 1 0.00
829 97 0.04
830 7 0.00
831 2 0.00
832 26 0.01
833 84 0.04
834 98 0.04
836 37 0.02
837 12 0.01
838 416 0.18
839 682 0.29
840 1 0.00
842 3 0.00
843 3 0.00
844 1 0.00
845 95 0.04
846 9 0.00
849 2 0.00
852 1 0.00
854 4 0.00
855 175 0.07
856 33 0.01
857 11 0.00
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (837 bp):
TGTAGTAGTTCCTTCTTTTATATGTGCTGATGCATTTAATAAATCCCTGCCCTTTTGTACTGGTT
TTGCCATTGGATGTATGATCTGGATGGTCGTAGCTGAGGTTCTCCCTGATGCATTTAAGGGGACT
GCACTAGTTGCATTTAAAATACATTTTTGAATATTCAAGAATACAGATTTTCTTCTGCAATAAAT
CTTTCAATATCTTTTGTTCTATTCTGCTTTGCATCCTATCAAGAACACCTTCATTGGAAATTTTC
AAATCTAGGTTGCTTCATAATCTAAAGAACTTCTCAATCTATGCTAATGGATAACCACTATTGCC
ATCCTCTTCAGTTTCTTTCTTGCGCAAAGCCTCAAAAGCTAAAACAACTTTATTTGAACAGCAAA
TTGTAAGAGATTAATCTTGTTTGACCATGTTTTATTTTTTTAAGATTTCTTCTGCTCTGGAGACA
TTATGTCTTCCCTCCCTCCCCCTCTTTTTTTTTTTACAACAGGAAGCTTCGCCAACTCGAGCGGC
ATCAGCAGCGACACTTTCAGTAGCATTCATGGAAGCACTAAGCACTATGTTCCAGAACTTCAGTC
ATGACTACAAGTGAGTAAATGCAACAACTTTGGGTTTCTTTGCTATGCTCTATCCTACATTTTGC
TGGAGTTATAACTTTTGTATGTTAAAAATTATTTCAAATTTTGTTTTAACAATATTATACCTTTT
TGTCTGTTTGCGTATATATTCCATTTTCTAGAACTCTGGTCATAGCTTTCTGTGAATGATATAAC
CACGTAAGTTGATTCAGACGGATTGTGCCTGATGTAGCTTGTATCAGGCTTGATATG
Found at i:7694730 original size:6 final size:6
Alignment explanation
Indices: 7694719--7694753 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
7694709 TGAATTATCC
7694719 TTGGAG TTGGAG TTGGAG TTGGAG TTGGAG TTGGA
1 TTGGAG TTGGAG TTGGAG TTGGAG TTGGAG TTGGA
7694754 ATCATCATCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.17, C:0.00, G:0.49, T:0.34
Consensus pattern (6 bp):
TTGGAG
Found at i:7696655 original size:2 final size:2
Alignment explanation
Indices: 7696648--7696688 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
7696638 CAACACCGAA
*
7696648 AT AT AT AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7696689 GGTTGCACAC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7701377 original size:3 final size:3
Alignment explanation
Indices: 7701369--7701398 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
7701359 AGAAAAGAGA
7701369 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7701399 GTTTAAATTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:7702143 original size:154 final size:155
Alignment explanation
Indices: 7701926--7702216 Score: 462
Period size: 155 Copynumber: 1.9 Consensus size: 155
7701916 GATTTTATAT
* *
7701926 ATAATTTTTTAAACTCAAACTTTATTTGATTCGACTTAAAAATTATTATATTAATAAATAATATT
1 ATAATATTTTAAACTCAAACTTAATTTGATTCGACTTAAAAATTATTATATTAATAAATAATA-T
*
7701991 TTTATTTAATTTTACTT-AAA-ATTAAAATATTAATATTAAAAGTCTTTTAATATTTTAATTTTA
65 TTTATTTAATTTTAATTAAAATATTAAAATATTAATATTAAAAGTCTTTTAATATTTTAATTTTA
7702054 AATATTTTCATAGTTCTACTTTGAAC
130 AATATTTTCATAGTTCTACTTTGAAC
* * * *
7702080 ATAATATTTTAAATTCGAACTTAATTTGATTCGATTTGAAATATTATTATATTAATAAA-AATAT
1 ATAATATTTTAAACTCAAACTTAATTTGATTCGACTT-AAAAATTATTATATTAATAAATAATAT
* *
7702144 TTTATTTAATTTTAATTAAAATATTAAAATATTAGTATTAAAAGTCTTTTGATATTTTAATTTTA
65 TTTATTTAATTTTAATTAAAATATTAAAATATTAATATTAAAAGTCTTTTAATATTTTAATTTTA
7702209 AATATTTT
130 AATATTTT
7702217 AATTTTTGAT
Statistics
Matches: 125, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
153 17 0.14
154 39 0.31
155 69 0.55
ACGTcount: A:0.41, C:0.05, G:0.04, T:0.50
Consensus pattern (155 bp):
ATAATATTTTAAACTCAAACTTAATTTGATTCGACTTAAAAATTATTATATTAATAAATAATATT
TTATTTAATTTTAATTAAAATATTAAAATATTAATATTAAAAGTCTTTTAATATTTTAATTTTAA
ATATTTTCATAGTTCTACTTTGAAC
Found at i:7702284 original size:155 final size:153
Alignment explanation
Indices: 7701970--7702287 Score: 367
Period size: 155 Copynumber: 2.1 Consensus size: 153
7701960 CTTAAAAATT
*
7701970 ATTATATTAATAAATAATATTTTTATTTAATTTTACTTAAAATTAAAATATTAATATTAAAAGTC
1 ATTATATTAATAAATAATATTTTTATTTAATTTTAATTAAAATTAAAATATTAATATTAAAAGTC
* * *
7702035 TTTTAATATTTTAATTTTAAATATTTTCATAGTTCTACTTTGAACATAATATTTTAAATTCGAAC
66 TTTTAATATTTTAATTTTAAATATTTTAATAGTTATACTTTAAACATAATATTTTAAATTCGAAC
* * * * * *
7702100 TTAATTTGATTCGATTTGAAATATT
131 -TAA-TTAAATCAATATCAAATATA
*
7702125 ATTATATTAATAAA-AATA-TTTTATTTAATTTTAATTAAAATATTAAAATATTAGTATTAAAAG
1 ATTATATTAATAAATAATATTTTTATTTAATTTTAATT-AAA-ATTAAAATATTAATATTAAAAG
* **
7702188 TCTTTTGATATTTTAATTTTAAATATTTTAATTTTTGATACTATTAAACATAAATATTTTTAATA
64 TCTTTTAATATTTTAATTTTAAATATTTTAATAGTT-ATACT-TTAAACAT-AATA-TTTTAA-A
** *
7702253 TTTTAA-TAA-TAAAT-AATATCATATATA
124 TTCGAACTAATTAAATCAATATCAAATATA
7702280 ATTATATT
1 ATTATATT
7702288 TTATTATTTT
Statistics
Matches: 139, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
153 17 0.12
154 7 0.05
155 83 0.60
156 7 0.05
157 7 0.05
158 7 0.05
159 6 0.04
160 5 0.04
ACGTcount: A:0.42, C:0.04, G:0.03, T:0.50
Consensus pattern (153 bp):
ATTATATTAATAAATAATATTTTTATTTAATTTTAATTAAAATTAAAATATTAATATTAAAAGTC
TTTTAATATTTTAATTTTAAATATTTTAATAGTTATACTTTAAACATAATATTTTAAATTCGAAC
TAATTAAATCAATATCAAATATA
Found at i:7702445 original size:12 final size:12
Alignment explanation
Indices: 7702428--7702453 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7702418 TATTTTAATA
7702428 ATAAATATAAAT
1 ATAAATATAAAT
7702440 ATAAATATAAAT
1 ATAAATATAAAT
7702452 AT
1 AT
7702454 TTTTTATGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (12 bp):
ATAAATATAAAT
Found at i:7702469 original size:23 final size:22
Alignment explanation
Indices: 7702437--7702511 Score: 64
Period size: 22 Copynumber: 3.4 Consensus size: 22
7702427 AATAAATATA
7702437 AATAT-AAATATAAATATTTTT
1 AATATAAAATATAAATATTTTT
* ** * *
7702458 TATGATTTAATAATAGATACTTTT
1 AAT-ATAAAAT-ATAAATATTTTT
7702482 AATATAAAATATAAATA-TTTT
1 AATATAAAATATAAATATTTTT
7702503 AATAGTAAA
1 AATA-TAAA
7702512 CATTACTATT
Statistics
Matches: 42, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
21 10 0.24
22 12 0.29
23 8 0.19
24 12 0.29
ACGTcount: A:0.51, C:0.01, G:0.04, T:0.44
Consensus pattern (22 bp):
AATATAAAATATAAATATTTTT
Found at i:7702546 original size:22 final size:20
Alignment explanation
Indices: 7702478--7702547 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 20
7702468 TAATAGATAC
*
7702478 TTTTAATATAAAATATAAATA
1 TTTTAATATAAAAAAT-AATA
* * *
7702499 TTTTAATAGTAAACATTACTA
1 TTTTAATA-TAAAAAATAATA
7702520 TTTTAATATTAATAAAATAATA
1 TTTTAATA-TAA-AAAATAATA
7702542 TTTTAA
1 TTTTAA
7702548 GAATAATACT
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
21 22 0.56
22 17 0.44
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (20 bp):
TTTTAATATAAAAAATAATA
Found at i:7702561 original size:42 final size:43
Alignment explanation
Indices: 7702515--7702598 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
7702505 TAGTAAACAT
* *
7702515 TACTATTTT-AATATTAATAAAATAAT-ATTTTAAGAATAATAC
1 TACTATTTTAAATATT-ATAAAATAATAATATAAAGAATAATAC
* *
7702557 TACTATTTTAAATATTTTAAAATATTAATATAAAGAATAATA
1 TACTATTTTAAATATTATAAAATAATAATATAAAGAATAATA
7702599 AATAGTTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
42 17 0.47
43 19 0.53
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (43 bp):
TACTATTTTAAATATTATAAAATAATAATATAAAGAATAATAC
Found at i:7702723 original size:7 final size:7
Alignment explanation
Indices: 7702713--7702746 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
7702703 TAATAATAAA
7702713 TAATATT
1 TAATATT
7702720 TAATATT
1 TAATATT
7702727 TAATATT
1 TAATATT
*
7702734 TGATATT
1 TAATATT
7702741 CTAATA
1 -TAATA
7702747 ATTATGCACT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 20 0.83
8 4 0.17
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.53
Consensus pattern (7 bp):
TAATATT
Found at i:7702727 original size:25 final size:25
Alignment explanation
Indices: 7702676--7702725 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
7702666 ATAATTATTC
*
7702676 TTTAAT-ATTAATAATTTTAATATA
1 TTTAATAATAAATAATTTTAATATA
7702700 TTTTAATAATAAATAATATTTAATAT
1 -TTTAATAATAAATAAT-TTTAATAT
7702726 TTAATATTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 6 0.27
26 8 0.36
27 8 0.36
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (25 bp):
TTTAATAATAAATAATTTTAATATA
Found at i:7703307 original size:21 final size:20
Alignment explanation
Indices: 7703283--7703345 Score: 54
Period size: 21 Copynumber: 3.0 Consensus size: 20
7703273 CATTAATACG
7703283 ATTTTGATAATTTTTGATAAA
1 ATTTTG-TAATTTTTGATAAA
* * *
7703304 ATTTTGGTAATCTCTTAATATA
1 ATTTT-GTAAT-TTTTGATAAA
*
7703326 ATTTAGTAAATTTTTGATAA
1 ATTTTGT-AATTTTTGATAA
7703346 CTTATGATAT
Statistics
Matches: 32, Mismatches: 7, Indels: 6
0.71 0.16 0.13
Matches are distributed among these distances:
21 17 0.53
22 15 0.47
ACGTcount: A:0.37, C:0.03, G:0.10, T:0.51
Consensus pattern (20 bp):
ATTTTGTAATTTTTGATAAA
Found at i:7708138 original size:10 final size:9
Alignment explanation
Indices: 7708100--7708170 Score: 53
Period size: 9 Copynumber: 8.2 Consensus size: 9
7708090 TTAATATAAA
7708100 TATTAAAA-
1 TATTAAAAT
7708108 TATTAAAAAT
1 TATT-AAAAT
*
7708118 TATT--TAT
1 TATTAAAAT
7708125 TATTAAAAT
1 TATTAAAAT
*
7708134 ATATTGAAAT
1 -TATTAAAAT
*
7708144 TATT--TAT
1 TATTAAAAT
7708151 TATTAAAAT
1 TATTAAAAT
*
7708160 TATTAATAT
1 TATTAAAAT
7708169 TA
1 TA
7708171 AAAAATAATG
Statistics
Matches: 50, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
7 12 0.24
8 4 0.08
9 22 0.44
10 12 0.24
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (9 bp):
TATTAAAAT
Found at i:7708150 original size:26 final size:26
Alignment explanation
Indices: 7708100--7708170 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
7708090 TTAATATAAA
*
7708100 TATTAAAATAT-TAAAAATTATTTAT
1 TATTAAAATATATTAAAATTATTTAT
*
7708125 TATTAAAATATATTGAAATTATTTAT
1 TATTAAAATATATTAAAATTATTTAT
*
7708151 TATTAAAAT-TATTAATATTA
1 TATTAAAATATATTAAAATTA
7708171 AAAAATAATG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 20 0.49
26 21 0.51
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (26 bp):
TATTAAAATATATTAAAATTATTTAT
Found at i:7708174 original size:16 final size:16
Alignment explanation
Indices: 7708134--7708173 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
7708124 TTATTAAAAT
*
7708134 ATATTGAAATTATTTA
1 ATATTAAAATTATTTA
*
7708150 TTATTAAAATTA-TTA
1 ATATTAAAATTATTTA
7708165 ATATTAAAA
1 ATATTAAAA
7708174 AATAATGATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 11 0.52
16 10 0.48
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (16 bp):
ATATTAAAATTATTTA
Found at i:7710716 original size:19 final size:19
Alignment explanation
Indices: 7710692--7710729 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
7710682 AAGAGTTTTG
7710692 GCATTTAAAACTCTTATGA
1 GCATTTAAAACTCTTATGA
7710711 GCATTTAAAACTCTTATGA
1 GCATTTAAAACTCTTATGA
7710730 AAATACTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (19 bp):
GCATTTAAAACTCTTATGA
Found at i:7720370 original size:31 final size:29
Alignment explanation
Indices: 7720301--7720378 Score: 84
Period size: 31 Copynumber: 2.6 Consensus size: 29
7720291 AAATTTAACA
*
7720301 CAACTTTTAAAAATATTATTTAATATCTT
1 CAACTTTTAAAAATATTATTAAATATCTT
* * *
7720330 TAATTTTTTATAAATACTTATTAAATTATCTT
1 CAA-CTTTTAAAAATA-TTATTAAA-TATCTT
*
7720362 CAACTTTTAAATATATT
1 CAACTTTTAAAAATATT
7720379 TTATAAAAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
29 2 0.05
30 12 0.32
31 16 0.42
32 8 0.21
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (29 bp):
CAACTTTTAAAAATATTATTAAATATCTT
Found at i:7720968 original size:17 final size:16
Alignment explanation
Indices: 7720948--7720990 Score: 61
Period size: 17 Copynumber: 2.7 Consensus size: 16
7720938 GTTTATCAAT
7720948 ATTTAAATAAAAAATTA
1 ATTTAAATAAAAAA-TA
*
7720965 ATTTAAATATAAAATA
1 ATTTAAATAAAAAATA
7720981 A-TTAAATAAA
1 ATTTAAATAAA
7720991 TAAAAATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 8 0.33
16 3 0.12
17 13 0.54
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
ATTTAAATAAAAAATA
Found at i:7720993 original size:17 final size:17
Alignment explanation
Indices: 7720945--7720995 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
7720935 AAAGTTTATC
*
7720945 AATATTTAAATAAA-AA
1 AATAATTAAATAAATAA
*
7720961 ATTAATTTAAAT--ATAA
1 AATAA-TTAAATAAATAA
7720977 AATAATTAAATAAATAA
1 AATAATTAAATAAATAA
7720994 AA
1 AA
7720996 ATTATTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
15 7 0.25
16 9 0.32
17 12 0.43
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
AATAATTAAATAAATAA
Found at i:7721008 original size:18 final size:17
Alignment explanation
Indices: 7720947--7721010 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 17
7720937 AGTTTATCAA
7720947 TATTTAAATAAAAA-AT
1 TATTTAAATAAAAATAT
7720963 TAATTTAAATATAAAATAAT
1 T-ATTTAAATA-AAAAT-AT
**
7720983 TAAATAAATAAAAATTAT
1 TATTTAAATAAAAA-TAT
7721001 TATTTAAATA
1 TATTTAAATA
7721011 TATTTATGGA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
16 1 0.03
17 9 0.23
18 18 0.46
19 8 0.21
20 3 0.08
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TATTTAAATAAAAATAT
Found at i:7727234 original size:2 final size:2
Alignment explanation
Indices: 7727227--7727257 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7727217 TGTTTCTCAC
7727227 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
7727258 ACACACACAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:7727262 original size:2 final size:2
Alignment explanation
Indices: 7727257--7727282 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7727247 CTCTCTCTCT
7727257 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
7727283 GTTTAGGCGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:7732505 original size:19 final size:18
Alignment explanation
Indices: 7732477--7732519 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
7732467 TTTTAAAAGC
7732477 TGTTTCCAGAATGTTATTA
1 TGTTTCCAG-ATGTTATTA
* * *
7732496 TGTTTTCAGATTTTATTT
1 TGTTTCCAGATGTTATTA
7732514 TGTTTC
1 TGTTTC
7732520 AGTTTTTGTG
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.19, C:0.09, G:0.14, T:0.58
Consensus pattern (18 bp):
TGTTTCCAGATGTTATTA
Found at i:7741587 original size:54 final size:54
Alignment explanation
Indices: 7741484--7741589 Score: 122
Period size: 54 Copynumber: 2.0 Consensus size: 54
7741474 TATAAGAACG
* * **
7741484 AAATTGTAATAATAATAAAATATATCTGAAAAAAAAGTTGTAAACCAAAAAATA
1 AAATTGCAATAATAATAAAATATACCTGAAAAAAAAGTTACAAACCAAAAAATA
* * * ** *
7741538 AAATTGCAATAGTAATAAAATGTACCTTAAAAAATGGTTACAAATCAAAAAA
1 AAATTGCAATAATAATAAAATATACCTGAAAAAAAAGTTACAAACCAAAAAA
7741590 ATGAAAAACC
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 42 1.00
ACGTcount: A:0.58, C:0.08, G:0.08, T:0.25
Consensus pattern (54 bp):
AAATTGCAATAATAATAAAATATACCTGAAAAAAAAGTTACAAACCAAAAAATA
Found at i:7742617 original size:27 final size:27
Alignment explanation
Indices: 7742587--7742638 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
7742577 TTTTTATTTT
7742587 ATTTTTTATTAAATCTATTTTTTTAAA
1 ATTTTTTATTAAATCTATTTTTTTAAA
** *
7742614 ATTTTTTATTATTTTTATTTTTTTA
1 ATTTTTTATTAAATCTATTTTTTTA
7742639 TTAGATAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (27 bp):
ATTTTTTATTAAATCTATTTTTTTAAA
Found at i:7743769 original size:2 final size:2
Alignment explanation
Indices: 7743764--7743802 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
7743754 TCTCTCTCTC
* *
7743764 TA TA TA TA TA TA TA TA TA TA TA GA TA TA TA GA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7743803 CATCTCTAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (2 bp):
TA
Found at i:7744355 original size:19 final size:19
Alignment explanation
Indices: 7744295--7744356 Score: 88
Period size: 20 Copynumber: 3.2 Consensus size: 19
7744285 ATTTATTTGT
**
7744295 TTTAAAATTTTTTTAGAAAA
1 TTTAAAATTTTTTT-GAATG
7744315 TTTAAAATTTTTTTGAATTG
1 TTTAAAATTTTTTTGAA-TG
7744335 TTTAAAATTTTTTTGAATG
1 TTTAAAATTTTTTTGAATG
7744354 TTT
1 TTT
7744357 TTTAAAAATT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
19 8 0.21
20 31 0.79
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (19 bp):
TTTAAAATTTTTTTGAATG
Done.