Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15507587
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 48 of 91
Found at i:7744368 original size:20 final size:20
Alignment explanation
Indices: 7744345--7744382 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7744335 TTTAAAATTT
7744345 TTTTGAATGTTTTTTAAAAA
1 TTTTGAATGTTTTTTAAAAA
*
7744365 TTTTGAATTTTTTTTAAA
1 TTTTGAATGTTTTTTAAA
7744383 GTTAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.61
Consensus pattern (20 bp):
TTTTGAATGTTTTTTAAAAA
Found at i:7744396 original size:19 final size:19
Alignment explanation
Indices: 7744374--7744433 Score: 59
Period size: 19 Copynumber: 3.2 Consensus size: 19
7744364 ATTTTGAATT
*
7744374 TTTTTTAAAGTTAAAAAAA
1 TTTTTTAAATTTAAAAAAA
** * *
7744393 TTTTAGAATTTTTAAAAAA
1 TTTTTTAAATTTAAAAAAA
7744412 -TTTTTAGAATTTAAAAAAA
1 TTTTTTA-AATTTAAAAAAA
7744431 TTT
1 TTT
7744434 AGAATTTTTT
Statistics
Matches: 30, Mismatches: 9, Indels: 3
0.71 0.21 0.07
Matches are distributed among these distances:
18 4 0.13
19 24 0.80
20 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.47
Consensus pattern (19 bp):
TTTTTTAAATTTAAAAAAA
Found at i:7744407 original size:20 final size:20
Alignment explanation
Indices: 7744384--7744442 Score: 88
Period size: 20 Copynumber: 3.1 Consensus size: 20
7744374 TTTTTTAAAG
7744384 TTAAAAAAATTTTAGAATTT
1 TTAAAAAAATTTTAGAATTT
*
7744404 TTAAAAAATTTTTAGAA--T
1 TTAAAAAAATTTTAGAATTT
7744422 TTAAAAAAA-TTTAGAATTT
1 TTAAAAAAATTTTAGAATTT
7744441 TT
1 TT
7744443 TTAGAATTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
17 7 0.20
18 9 0.26
19 3 0.09
20 16 0.46
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (20 bp):
TTAAAAAAATTTTAGAATTT
Found at i:7744958 original size:19 final size:20
Alignment explanation
Indices: 7744929--7744966 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
7744919 AAATATATAT
*
7744929 TTTATTATTTATTTATTTAA
1 TTTATTATTTATATATTTAA
7744949 TTTA-TATTTATATATTTA
1 TTTATTATTTATATATTTA
7744967 TTAAAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTATTATTTATATATTTAA
Found at i:7744980 original size:27 final size:28
Alignment explanation
Indices: 7744917--7744980 Score: 64
Period size: 27 Copynumber: 2.4 Consensus size: 28
7744907 TAATATATAT
7744917 AAAAATA-TATATTTTATTATTTATTTA
1 AAAAATATTATATTTTATTATTTATTTA
***
7744944 TTTAAT-TTATA-TTTATATATTTA-TTA
1 AAAAATATTATATTTTAT-TATTTATTTA
7744970 AAAAATATTAT
1 AAAAATATTAT
7744981 TTAATACTTT
Statistics
Matches: 28, Mismatches: 6, Indels: 6
0.70 0.15 0.15
Matches are distributed among these distances:
26 11 0.39
27 17 0.61
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (28 bp):
AAAAATATTATATTTTATTATTTATTTA
Found at i:7745283 original size:16 final size:15
Alignment explanation
Indices: 7745262--7745291 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
7745252 TAAAATAATG
7745262 TAATTTATTATTTATT
1 TAATTTA-TATTTATT
7745278 TAATTTATATTTAT
1 TAATTTATATTTAT
7745292 ATATTATATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TAATTTATATTTATT
Found at i:7745357 original size:29 final size:29
Alignment explanation
Indices: 7745282--7745358 Score: 68
Period size: 29 Copynumber: 2.6 Consensus size: 29
7745272 TTTATTTAAT
* * *
7745282 TTATATTTATATATTATATCAATAAAGATA
1 TTATATTTATATATAAT-TCAATAAAAAAA
* *
7745312 TTAT-TTAATGCAT-TAATTTAATAAAAAAA
1 TTATATTTAT--ATATAATTCAATAAAAAAA
7745341 TTATATTTATATATAATT
1 TTATATTTATATATAATT
7745359 AAGTTATAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 9
0.71 0.12 0.17
Matches are distributed among these distances:
28 2 0.05
29 22 0.59
30 11 0.30
31 2 0.05
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.48
Consensus pattern (29 bp):
TTATATTTATATATAATTCAATAAAAAAA
Found at i:7746372 original size:3 final size:3
Alignment explanation
Indices: 7746364--7746393 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
7746354 TTGCTCTTCA
7746364 TAT TAT TAT TA- TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
7746394 CAACGCAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 24 0.92
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:7749883 original size:3 final size:3
Alignment explanation
Indices: 7749875--7749906 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
7749865 TTCATTTTTA
*
7749875 ATT ATT ATT ATT ATT ATT ATT ACT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
7749907 GTAGATAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:7759076 original size:3 final size:3
Alignment explanation
Indices: 7759068--7759108 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
7759058 CATTAATGTC
7759068 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7759109 GTATATAAGC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7761142 original size:14 final size:14
Alignment explanation
Indices: 7761100--7761142 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
7761090 AACTAATAGT
*
7761100 AAATGATAAATATAA
1 AAATAATAAA-ATAA
*
7761115 AAATATATATAATAA
1 AAATA-ATAAAATAA
7761130 AAATAATAAAATA
1 AAATAATAAAATA
7761143 CTAATAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 7 0.29
15 13 0.54
16 4 0.17
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (14 bp):
AAATAATAAAATAA
Found at i:7761460 original size:26 final size:26
Alignment explanation
Indices: 7761413--7761462 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
7761403 TTAAAACCCT
* *
7761413 AAAACCCTAATATGAAATCCTAAAGC
1 AAAACCCTAATACGAAACCCTAAAGC
* *
7761439 AAAACCCTAATGCGAGACCCTAAA
1 AAAACCCTAATACGAAACCCTAAA
7761463 ACCGAAACCC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.48, C:0.26, G:0.10, T:0.16
Consensus pattern (26 bp):
AAAACCCTAATACGAAACCCTAAAGC
Found at i:7761555 original size:19 final size:19
Alignment explanation
Indices: 7761531--7761572 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
7761521 AAATCAAAAT
*
7761531 CCTAGGTGAATTCCTAAAC
1 CCTAGGTGAATTACTAAAC
7761550 CCTAGGTGAATTACTAAAC
1 CCTAGGTGAATTACTAAAC
7761569 CCTA
1 CCTA
7761573 AGCAAAATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.26
Consensus pattern (19 bp):
CCTAGGTGAATTACTAAAC
Found at i:7766319 original size:19 final size:19
Alignment explanation
Indices: 7766297--7766340 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
7766287 TTCAAGGCTA
7766297 ACAAATTGTTCTAAGGTAG
1 ACAAATTGTTCTAAGGTAG
7766316 ACAAATTGTTCTAAGGTAG
1 ACAAATTGTTCTAAGGTAG
7766335 ACAAAT
1 ACAAAT
7766341 AATAGGGGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.41, C:0.11, G:0.18, T:0.30
Consensus pattern (19 bp):
ACAAATTGTTCTAAGGTAG
Found at i:7766620 original size:15 final size:15
Alignment explanation
Indices: 7766590--7766623 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
7766580 ATTATTCTTT
**
7766590 AAATATATTTTTATA
1 AAATATATTTAAATA
7766605 AAATATATTTAAATA
1 AAATATATTTAAATA
7766620 AAAT
1 AAAT
7766624 TCTTACCAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
AAATATATTTAAATA
Found at i:7767229 original size:84 final size:84
Alignment explanation
Indices: 7767088--7767255 Score: 300
Period size: 84 Copynumber: 2.0 Consensus size: 84
7767078 CATATTAAGT
*
7767088 CATTTAAGAAAAATTTTCAATATTAAATTATTTGGTAAATTTTAAATATGTTTTAAAGACTTGCA
1 CATTTAAGAAAAATTTTCAATATTAAATTATTTGATAAATTTTAAATATGTTTTAAAGACTTGCA
*
7767153 TAACTTGAAATCAGACTGG
66 TAACTTAAAATCAGACTGG
*
7767172 CATTTAAGAAAAATTTTTAATATTAAATTATTTGATAAATTTTAAATATGTTTTAAAGACTTGCA
1 CATTTAAGAAAAATTTTCAATATTAAATTATTTGATAAATTTTAAATATGTTTTAAAGACTTGCA
*
7767237 TAACTTAAAATCAGGCTGG
66 TAACTTAAAATCAGACTGG
7767256 TACCATCTTT
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
84 80 1.00
ACGTcount: A:0.41, C:0.08, G:0.11, T:0.40
Consensus pattern (84 bp):
CATTTAAGAAAAATTTTCAATATTAAATTATTTGATAAATTTTAAATATGTTTTAAAGACTTGCA
TAACTTAAAATCAGACTGG
Found at i:7777671 original size:16 final size:16
Alignment explanation
Indices: 7777652--7777686 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7777642 TTTGATAACA
* *
7777652 TATCTTTAACAATTGG
1 TATCATTAAAAATTGG
7777668 TATCATTAAAAATTGG
1 TATCATTAAAAATTGG
7777684 TAT
1 TAT
7777687 GAGAATTAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.37, C:0.09, G:0.11, T:0.43
Consensus pattern (16 bp):
TATCATTAAAAATTGG
Found at i:7777700 original size:19 final size:19
Alignment explanation
Indices: 7777672--7777708 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
7777662 AATTGGTATC
7777672 ATTAAAAATTGGTATGAGA
1 ATTAAAAATTGGTATGAGA
*
7777691 ATTAACAATTGGTATGAG
1 ATTAAAAATTGGTATGAG
7777709 CTTATATACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.43, C:0.03, G:0.22, T:0.32
Consensus pattern (19 bp):
ATTAAAAATTGGTATGAGA
Found at i:7778398 original size:13 final size:13
Alignment explanation
Indices: 7778382--7778407 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7778372 AAGATAGAGG
7778382 TTTTCAAAATCTT
1 TTTTCAAAATCTT
7778395 TTTTCAAAATCTT
1 TTTTCAAAATCTT
7778408 AAATGTCTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.00, T:0.54
Consensus pattern (13 bp):
TTTTCAAAATCTT
Found at i:7782939 original size:18 final size:18
Alignment explanation
Indices: 7782916--7782969 Score: 63
Period size: 21 Copynumber: 2.8 Consensus size: 18
7782906 AATTTGTTGG
7782916 TTATTGATGTTGTTGATA
1 TTATTGATGTTGTTGATA
*
7782934 TTATTGTTAATGTTATTGATA
1 TTATTG---ATGTTGTTGATA
*
7782955 TTGTTGATGTTGTTG
1 TTATTGATGTTGTTG
7782970 TTGATCTTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
18 14 0.47
21 16 0.53
ACGTcount: A:0.20, C:0.00, G:0.22, T:0.57
Consensus pattern (18 bp):
TTATTGATGTTGTTGATA
Found at i:7782949 original size:30 final size:30
Alignment explanation
Indices: 7782915--7782980 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
7782905 GAATTTGTTG
*
7782915 GTTATTGATGTTGTTGATATTATTGTTAAT
1 GTTATTGATATTGTTGATATTATTGTTAAT
* * *
7782945 GTTATTGATATTGTTGATGTTGTTGTTGAT
1 GTTATTGATATTGTTGATATTATTGTTAAT
*
7782975 CTTATT
1 GTTATT
7782981 TTTATTATTG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.20, C:0.02, G:0.21, T:0.58
Consensus pattern (30 bp):
GTTATTGATATTGTTGATATTATTGTTAAT
Found at i:7788273 original size:34 final size:34
Alignment explanation
Indices: 7788242--7788314 Score: 92
Period size: 34 Copynumber: 2.1 Consensus size: 34
7788232 TTTAAAATGG
* **
7788242 ATTTTCTAAAATACTGCATAATTTTTGAAAATCC
1 ATTTTCTAAAACACAACATAATTTTTGAAAATCC
* * *
7788276 ATTTTTTCAAACACAACATAATTTTTGAAAATTC
1 ATTTTCTAAAACACAACATAATTTTTGAAAATCC
7788310 ATTTT
1 ATTTT
7788315 TGAAATGGAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.38, C:0.14, G:0.04, T:0.44
Consensus pattern (34 bp):
ATTTTCTAAAACACAACATAATTTTTGAAAATCC
Found at i:7789478 original size:10 final size:9
Alignment explanation
Indices: 7789462--7789488 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
7789452 GTTTTGTTCT
7789462 TAAAAAAAA
1 TAAAAAAAA
7789471 TAAAAAAAA
1 TAAAAAAAA
7789480 TAAAAAAAA
1 TAAAAAAAA
7789489 GATGTTTGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:7793524 original size:9 final size:10
Alignment explanation
Indices: 7793500--7793529 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
7793490 AAAAATGATG
*
7793500 AAAAATGAAA
1 AAAAAAGAAA
7793510 AAAAAAGAAA
1 AAAAAAGAAA
7793520 AAAAAAGAAA
1 AAAAAAGAAA
7793530 TTAATGGGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.87, C:0.00, G:0.10, T:0.03
Consensus pattern (10 bp):
AAAAAAGAAA
Found at i:7795344 original size:30 final size:32
Alignment explanation
Indices: 7795310--7795380 Score: 92
Period size: 32 Copynumber: 2.3 Consensus size: 32
7795300 AGATTGCCTA
* *
7795310 TTCAATATGACAA-T-CCCATTAGATAACATG
1 TTCAATATAACAATTGCCCATTACATAACATG
* *
7795340 TTCAATATAACAATTGTCCATTACATAATATG
1 TTCAATATAACAATTGCCCATTACATAACATG
7795372 TTCAATATA
1 TTCAATATA
7795381 TAAACCTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 12 0.34
31 1 0.03
32 22 0.63
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.35
Consensus pattern (32 bp):
TTCAATATAACAATTGCCCATTACATAACATG
Found at i:7798856 original size:16 final size:16
Alignment explanation
Indices: 7798827--7798868 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
7798817 TCTAAGAAAG
7798827 AAAGAAGAAAAAAAAAA
1 AAAGAAG-AAAAAAAAA
* *
7798844 AAAGAAGAAAAAATAG
1 AAAGAAGAAAAAAAAA
7798860 AAAGAAGAA
1 AAAGAAGAA
7798869 GAGAAAGGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 16 0.70
17 7 0.30
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (16 bp):
AAAGAAGAAAAAAAAA
Found at i:7802941 original size:22 final size:22
Alignment explanation
Indices: 7802913--7802956 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
7802903 CTAAATCTTC
*
7802913 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
7802935 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
7802957 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:7806647 original size:23 final size:23
Alignment explanation
Indices: 7806592--7806676 Score: 125
Period size: 23 Copynumber: 3.6 Consensus size: 23
7806582 TTGAAAGGGT
* *
7806592 TCGGCAATGAAGGCCTAAATAGGAT
1 TCGGCAATGAAGGCCTAAA-A-AAG
7806617 TCGGCAATGAAGGCCTAAAAAAG
1 TCGGCAATGAAGGCCTAAAAAAG
7806640 TCGGCAATGAAGGCCTAAAAAAG
1 TCGGCAATGAAGGCCTAAAAAAG
*
7806663 TCAGCAATGAAGGC
1 TCGGCAATGAAGGC
7806677 TGAAAATTTT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
23 37 0.65
24 1 0.02
25 19 0.33
ACGTcount: A:0.40, C:0.18, G:0.27, T:0.15
Consensus pattern (23 bp):
TCGGCAATGAAGGCCTAAAAAAG
Found at i:7806852 original size:22 final size:22
Alignment explanation
Indices: 7806824--7806867 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
7806814 CTAAATCTTC
*
7806824 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
7806846 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
7806868 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:7811672 original size:74 final size:73
Alignment explanation
Indices: 7811568--7811706 Score: 206
Period size: 74 Copynumber: 1.9 Consensus size: 73
7811558 TACCTCATTT
* * *
7811568 TGCTTTCCTTGCCATCTGGGACTTTGTTTGCATTAAGTATAACTTAACATGCTGTAGTCATTGTG
1 TGCTTTCCTTACCATCTGGGACTTTCTTTGCATTAAGTATAACTTAACAAGCTGTAGTCATTGTG
7811633 AGCTACTA
66 AGCTACTA
* * * *
7811641 TGCTTTCCTTACCATTTTGGGACTTTCTTTGCGTTAAGTATAACTTAGCAAGTTGTAGTCATTGT
1 TGCTTTCCTTACCA-TCTGGGACTTTCTTTGCATTAAGTATAACTTAACAAGCTGTAGTCATTGT
7811706 G
65 G
7811707 GTACTTATAT
Statistics
Matches: 58, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
73 13 0.22
74 45 0.78
ACGTcount: A:0.21, C:0.18, G:0.19, T:0.42
Consensus pattern (73 bp):
TGCTTTCCTTACCATCTGGGACTTTCTTTGCATTAAGTATAACTTAACAAGCTGTAGTCATTGTG
AGCTACTA
Found at i:7813690 original size:12 final size:12
Alignment explanation
Indices: 7813673--7813699 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7813663 CCTTTAGGAT
7813673 GAGGATGACGAA
1 GAGGATGACGAA
7813685 GAGGATGACGAA
1 GAGGATGACGAA
7813697 GAG
1 GAG
7813700 TCCTTTTGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.07, G:0.44, T:0.07
Consensus pattern (12 bp):
GAGGATGACGAA
Found at i:7815854 original size:3 final size:3
Alignment explanation
Indices: 7815846--7815880 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
7815836 TCCAGATTGT
7815846 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
7815881 TAATTTAGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.34, G:0.00, T:0.34
Consensus pattern (3 bp):
TCA
Found at i:7818553 original size:26 final size:26
Alignment explanation
Indices: 7818524--7818573 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
7818514 AGATATTAAA
**
7818524 TTAAAATTTGGATATAACAATTTTTT
1 TTAAAATTTAAATATAACAATTTTTT
* *
7818550 TTAAAGTTTAAATATAATAATTTT
1 TTAAAATTTAAATATAACAATTTT
7818574 CATATATAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (26 bp):
TTAAAATTTAAATATAACAATTTTTT
Found at i:7821630 original size:34 final size:34
Alignment explanation
Indices: 7821592--7821675 Score: 82
Period size: 34 Copynumber: 2.4 Consensus size: 34
7821582 ACAAAAAATT
*
7821592 TTTAAAAAATTATTTTTTATAAATTTTCTTA-AA-A
1 TTTAAAAAATTATTTTTCA-AAATTTT-TTATAACA
* * * *
7821626 TTTAAAGAAATAAATCTTCAAAATTTTTTATAACT
1 TTTAAA-AAATTATTTTTCAAAATTTTTTATAACA
7821661 TTTAAAAAATTATTT
1 TTTAAAAAATTATTT
7821676 AAAAAAATTA
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
33 3 0.08
34 21 0.54
35 15 0.38
ACGTcount: A:0.45, C:0.05, G:0.01, T:0.49
Consensus pattern (34 bp):
TTTAAAAAATTATTTTTCAAAATTTTTTATAACA
Found at i:7824896 original size:22 final size:22
Alignment explanation
Indices: 7824871--7824914 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
7824861 ATTTTTTGTC
7824871 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGGGATACAAATA
7824893 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGGGATACAAATA
7824915 TAAATATACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGGGATACAAATA
Found at i:7826497 original size:12 final size:12
Alignment explanation
Indices: 7826480--7826512 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
7826470 ATTTCTCACT
7826480 GGATAATGTCTC
1 GGATAATGTCTC
7826492 GGATAATGTCTC
1 GGATAATGTCTC
7826504 GGATAATGT
1 GGATAATGT
7826513 AGTTGAAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.33
Consensus pattern (12 bp):
GGATAATGTCTC
Found at i:7831496 original size:2 final size:2
Alignment explanation
Indices: 7831489--7831524 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
7831479 TTATTTCCCA
7831489 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7831525 GTAAAGCTAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7832779 original size:166 final size:167
Alignment explanation
Indices: 7832458--7832798 Score: 510
Period size: 167 Copynumber: 2.1 Consensus size: 167
7832448 ACAAACTGAG
* * * *
7832458 AAAATCCTTTTCACAGTTGTCGTAGATAATGTGTTTGATGAAGATATGTACACAATAGGGGTCGT
1 AAAATCCTTTTCACAGTTGTCGCAGATAATGTGTTTGATAAAGATATATACACAATAAGGGTCGT
* ** * *
7832523 TAATTTCTTAGTACTTTCTTTGTCTTTTTGTAGTGTAGTATAAATTGATAACATATATGGCCAAA
66 TAATTTCTTAGTACTTTCTTTGTCCTTTTGTAGCATAGGATAAATCGATAACATATATGGCCAAA
7832588 GCCCAATCATTTTCTCAAACATTGGA-TTATCAAATC
131 GCCCAATCATTTTCTCAAACATTGGATTTATCAAATC
* *
7832624 AAAATCCTTTTGCACAGTTGTTGCAGATAA-GATGTTTGATAAAGATATATACACAATAAGGGTT
1 AAAATCCTTTT-CACAGTTGTCGCAGATAATG-TGTTTGATAAAGATATATACACAATAAGGGTC
7832688 GTTAATTTCTTAGTACTTTCTTTGTCCTTTTGTAGCATAGGATAAATCGA-AACATATATGGCCA
64 GTTAATTTCTTAGTACTTTCTTTGTCCTTTTGTAGCATAGGATAAATCGATAACATATATGGCCA
* * *
7832752 AAGCCCAATCGTTTTCTGAAACATTGGATTTCTCAAATC
129 AAGCCCAATCATTTTCTCAAACATTGGATTTATCAAATC
7832791 AAAA-CCTT
1 AAAATCCTT
7832799 GAAACAGCTT
Statistics
Matches: 158, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
166 56 0.35
167 102 0.65
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (167 bp):
AAAATCCTTTTCACAGTTGTCGCAGATAATGTGTTTGATAAAGATATATACACAATAAGGGTCGT
TAATTTCTTAGTACTTTCTTTGTCCTTTTGTAGCATAGGATAAATCGATAACATATATGGCCAAA
GCCCAATCATTTTCTCAAACATTGGATTTATCAAATC
Found at i:7835817 original size:62 final size:62
Alignment explanation
Indices: 7835715--7835839 Score: 205
Period size: 62 Copynumber: 2.0 Consensus size: 62
7835705 GACAAGGCAG
* * *
7835715 CTAACATTTCTGCATGCAGGGTATGTCACTTTCAGTAAATTTTTGTAGATCAACTATATGTT
1 CTAACATTACTGCATGCAGGGTATGTCACTTTCAGAAAATTTTTGAAGATCAACTATATGTT
* *
7835777 CTAACATTACTGCATGCAGGGTATGTCACTTTCAGAAAATTTTTGAATATCAAGTATATGTT
1 CTAACATTACTGCATGCAGGGTATGTCACTTTCAGAAAATTTTTGAAGATCAACTATATGTT
7835839 C
1 C
7835840 ATTTTAACAT
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (62 bp):
CTAACATTACTGCATGCAGGGTATGTCACTTTCAGAAAATTTTTGAAGATCAACTATATGTT
Found at i:7841356 original size:3 final size:3
Alignment explanation
Indices: 7841350--7841387 Score: 60
Period size: 3 Copynumber: 12.7 Consensus size: 3
7841340 ATTTGCACCT
7841350 TCA TCA TCA -CTA TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TC-A TCA TCA TCA TCA TCA TCA TCA TCA TC
7841388 TGAACTTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 1 0.03
3 31 0.94
4 1 0.03
ACGTcount: A:0.32, C:0.34, G:0.00, T:0.34
Consensus pattern (3 bp):
TCA
Found at i:7844495 original size:27 final size:28
Alignment explanation
Indices: 7844443--7844496 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
7844433 TCACAAATAA
* *
7844443 CTTTCAATAATTATATAATAAATACAAT
1 CTTTCAATAATTACACAATAAATACAAT
7844471 CTTT-AATAATTACACAA-AAATTACAA
1 CTTTCAATAATTACACAATAAA-TACAA
7844497 GAATTAATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 3 0.13
27 16 0.70
28 4 0.17
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (28 bp):
CTTTCAATAATTACACAATAAATACAAT
Found at i:7848499 original size:55 final size:55
Alignment explanation
Indices: 7848397--7848501 Score: 133
Period size: 55 Copynumber: 1.9 Consensus size: 55
7848387 TTTTACAAAG
* * *
7848397 ATAAATAATAAAAATAAGATAAATGAGATAAAATAAAACAAATATAAACAAATAA
1 ATAAATAATAAAAAAAAGATAAATGAAATAAAATAAAACAAAAATAAACAAATAA
* *
7848452 ATAAA-AATAAAAAGAAAGATAAAT-AAATAAAGTAAAATAAGAAATAAACA
1 ATAAATAATAAAAA-AAAGATAAATGAAATAAAATAAAACAA-AAATAAACA
7848502 TAAAAAAATA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
54 21 0.49
55 22 0.51
ACGTcount: A:0.72, C:0.03, G:0.07, T:0.18
Consensus pattern (55 bp):
ATAAATAATAAAAAAAAGATAAATGAAATAAAATAAAACAAAAATAAACAAATAA
Found at i:7848505 original size:31 final size:30
Alignment explanation
Indices: 7848397--7848565 Score: 125
Period size: 30 Copynumber: 5.6 Consensus size: 30
7848387 TTTTACAAAG
* *
7848397 ATAAATAATAAAAATAAGATAAAT-GAGATAAA
1 ATAAA-AATAAAGATAA-ATAAATAAAG-TAAA
* * *
7848429 AT-AAAACAAATATAAACAAATAAA-TAAAA
1 ATAAAAATAAAGATAAATAAATAAAGT-AAA
*
7848458 ATAAAAAGAAAGATAAATAAATAAAGTAAA
1 ATAAAAATAAAGATAAATAAATAAAGTAAA
* * *
7848488 ATAAGAAATAAACATAAAAAAATAAAGATTAA
1 ATAA-AAATAAAGATAAATAAATAAAG-TAAA
* * *
7848520 ACAAAAATAAAGATAAAT--ATAAAATATA
1 ATAAAAATAAAGATAAATAAATAAAGTAAA
*
7848548 A-AAAAATAATGATAAATA
1 ATAAAAATAAAGATAAATA
7848566 CAATTATAAA
Statistics
Matches: 112, Mismatches: 18, Indels: 18
0.76 0.12 0.12
Matches are distributed among these distances:
27 15 0.13
28 4 0.04
29 15 0.13
30 36 0.32
31 34 0.30
32 8 0.07
ACGTcount: A:0.72, C:0.02, G:0.06, T:0.20
Consensus pattern (30 bp):
ATAAAAATAAAGATAAATAAATAAAGTAAA
Found at i:7848509 original size:21 final size:20
Alignment explanation
Indices: 7848485--7848556 Score: 63
Period size: 21 Copynumber: 3.4 Consensus size: 20
7848475 TAAATAAAGT
7848485 AAAATAAGAAATAAACATAAA
1 AAAATAA-AAATAAACATAAA
* *
7848506 AAAATAAAGATTAAACAAAAA
1 AAAATAAA-AATAAACATAAA
* *
7848527 TAAAGATAAATATAAAATATAAA
1 -AAA-ATAAAAAT-AAACATAAA
7848550 AAAATAA
1 AAAATAA
7848557 TGATAAATAC
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
20 1 0.02
21 21 0.51
22 7 0.17
23 12 0.29
ACGTcount: A:0.75, C:0.03, G:0.04, T:0.18
Consensus pattern (20 bp):
AAAATAAAAATAAACATAAA
Found at i:7848551 original size:44 final size:44
Alignment explanation
Indices: 7848452--7848594 Score: 134
Period size: 45 Copynumber: 3.3 Consensus size: 44
7848442 AAACAAATAA
* *
7848452 ATAAAAAT--AAAAAGAAAGATAAATA-AATAAAGTAAA-ATAAGAA
1 ATAAAAATAAAAAAATAAAGATAAATACAA-AAA-TAAAGATAA-AG
* * *
7848495 ATAAACATAAAAAAATAAAGATTAA-ACAAAAATAAAGATAAAT
1 ATAAAAATAAAAAAATAAAGATAAATACAAAAATAAAGATAAAG
* ** *
7848538 ATAAAATATAAAAAAATAATGATAAATACAATTATAAAGATTAAG
1 ATAAAA-ATAAAAAAATAAAGATAAATACAAAAATAAAGATAAAG
7848583 ATAAAAATAAAA
1 ATAAAAATAAAA
7848595 TAAAATTTAA
Statistics
Matches: 83, Mismatches: 11, Indels: 11
0.79 0.10 0.10
Matches are distributed among these distances:
43 17 0.20
44 31 0.37
45 35 0.42
ACGTcount: A:0.71, C:0.02, G:0.06, T:0.20
Consensus pattern (44 bp):
ATAAAAATAAAAAAATAAAGATAAATACAAAAATAAAGATAAAG
Found at i:7848552 original size:45 final size:44
Alignment explanation
Indices: 7848501--7848594 Score: 118
Period size: 44 Copynumber: 2.1 Consensus size: 44
7848491 AGAAATAAAC
*
7848501 ATAAAAAAATAAAGATTAA-ACAAAAATAAAGATAAATATAAAA
1 ATAAAAAAATAAAGATTAATACAAAAATAAAGATAAAGATAAAA
* * ** *
7848544 TATAAAAAAATAATGATAAATACAATTATAAAGATTAAGATAAAA
1 -ATAAAAAAATAAAGATTAATACAAAAATAAAGATAAAGATAAAA
7848589 ATAAAA
1 ATAAAA
7848595 TAAAATTTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
44 23 0.53
45 20 0.47
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.22
Consensus pattern (44 bp):
ATAAAAAAATAAAGATTAATACAAAAATAAAGATAAAGATAAAA
Found at i:7849057 original size:33 final size:33
Alignment explanation
Indices: 7849020--7849083 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
7849010 TTATAAATCT
*
7849020 TTCTTAACTTGTCCCCAAAAGTCTTGCTGATCA
1 TTCTTAACTTATCCCCAAAAGTCTTGCTGATCA
* * *
7849053 TTCTTAACTTATGCCCAAAGGTCTTGGTGAT
1 TTCTTAACTTATCCCCAAAAGTCTTGCTGAT
7849084 TATTTTTGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (33 bp):
TTCTTAACTTATCCCCAAAAGTCTTGCTGATCA
Found at i:7849233 original size:22 final size:22
Alignment explanation
Indices: 7849208--7849265 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
7849198 ATGTAATAAA
7849208 AGGTTTTAAAGATCACCCTTAG
1 AGGTTTTAAAGATCACCCTTAG
**
7849230 AGGTTTTATAA-ATCATGCTTAG
1 AGGTTTTA-AAGATCACCCTTAG
7849252 AGGTTTTAAGAGAT
1 AGGTTTTAA-AGAT
7849266 TATGCCATGA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
21 1 0.03
22 26 0.84
23 4 0.13
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (22 bp):
AGGTTTTAAAGATCACCCTTAG
Found at i:7849735 original size:9 final size:9
Alignment explanation
Indices: 7849706--7849762 Score: 60
Period size: 9 Copynumber: 6.3 Consensus size: 9
7849696 TATTGAAAGT
*
7849706 ATGCAATGA
1 ATGCAATGC
* *
7849715 ATACAATAC
1 ATGCAATGC
*
7849724 ATGGAATGC
1 ATGCAATGC
7849733 ATGCAATGC
1 ATGCAATGC
**
7849742 ATGCAATAA
1 ATGCAATGC
7849751 ATGCAATGC
1 ATGCAATGC
7849760 ATG
1 ATG
7849763 AAATTAATTT
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
9 37 1.00
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.23
Consensus pattern (9 bp):
ATGCAATGC
Found at i:7849748 original size:27 final size:27
Alignment explanation
Indices: 7849706--7849762 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
7849696 TATTGAAAGT
* *
7849706 ATGCAATGAATACAATACATGGAATGC
1 ATGCAATGAATACAATAAATGCAATGC
* *
7849733 ATGCAATGCATGCAATAAATGCAATGC
1 ATGCAATGAATACAATAAATGCAATGC
7849760 ATG
1 ATG
7849763 AAATTAATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.23
Consensus pattern (27 bp):
ATGCAATGAATACAATAAATGCAATGC
Found at i:7857019 original size:18 final size:18
Alignment explanation
Indices: 7856973--7857021 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
7856963 AATCAAAACA
* *
7856973 TTTTTTCATATTTTTAAT
1 TTTTTTCATTTTTTTAAG
*
7856991 TTTTTTGATTTTTTTAAG
1 TTTTTTCATTTTTTTAAG
*
7857009 TTTTTCCATTTTT
1 TTTTTTCATTTTT
7857022 AAGGAAAATA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.16, C:0.06, G:0.04, T:0.73
Consensus pattern (18 bp):
TTTTTTCATTTTTTTAAG
Found at i:7857896 original size:16 final size:17
Alignment explanation
Indices: 7857857--7857898 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
7857847 AAACATATTT
7857857 ATGATATGCATGAATATA
1 ATGATATG-ATGAATATA
*
7857875 AT-ATATGATGAATA-C
1 ATGATATGATGAATATA
7857890 ATGATATGA
1 ATGATATGA
7857899 ATGACAAGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 2 0.09
16 13 0.59
17 5 0.23
18 2 0.09
ACGTcount: A:0.45, C:0.05, G:0.17, T:0.33
Consensus pattern (17 bp):
ATGATATGATGAATATA
Found at i:7858062 original size:18 final size:18
Alignment explanation
Indices: 7858031--7858065 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
7858021 TTTGAGGGAA
7858031 GTTTCAGGTCTAGGTTTG
1 GTTTCAGGTCTAGGTTTG
7858049 GTTTCGAGGT-TAGGTTT
1 GTTTC-AGGTCTAGGTTT
7858066 AGGGTTTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.11, C:0.09, G:0.34, T:0.46
Consensus pattern (18 bp):
GTTTCAGGTCTAGGTTTG
Found at i:7858181 original size:13 final size:14
Alignment explanation
Indices: 7858133--7858183 Score: 52
Period size: 13 Copynumber: 3.8 Consensus size: 14
7858123 TAGGCTAGGG
* *
7858133 TTTAAGATTTAGGA
1 TTTAAGGTTTATGA
7858147 TTTAAGGTTT-TGA
1 TTTAAGGTTTATGA
* *
7858160 CTTAGGGTTTATG-
1 TTTAAGGTTTATGA
7858173 TTTAAGGTTTA
1 TTTAAGGTTTA
7858184 GGGTTTCATG
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
13 19 0.63
14 11 0.37
ACGTcount: A:0.25, C:0.02, G:0.24, T:0.49
Consensus pattern (14 bp):
TTTAAGGTTTATGA
Found at i:7858224 original size:19 final size:19
Alignment explanation
Indices: 7858178--7858279 Score: 116
Period size: 19 Copynumber: 5.4 Consensus size: 19
7858168 TTATGTTTAA
7858178 GGTTTAGGGTTTCATGGGT
1 GGTTTAGGGTTTCATGGGT
*
7858197 GGTTTTAGGGTTTCATGAGT
1 GG-TTTAGGGTTTCATGGGT
7858217 GGTTTAGGGTTTCATGGGT
1 GGTTTAGGGTTTCATGGGT
* * * *
7858236 TGTATAAGGTGTCATGGGT
1 GGTTTAGGGTTTCATGGGT
* * *
7858255 AGTTTAAGGTTTCATGAG-
1 GGTTTAGGGTTTCATGGGT
7858273 GGTTTAG
1 GGTTTAG
7858280 CATTTCGTGA
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
18 5 0.07
19 47 0.67
20 18 0.26
ACGTcount: A:0.17, C:0.05, G:0.37, T:0.41
Consensus pattern (19 bp):
GGTTTAGGGTTTCATGGGT
Found at i:7865385 original size:22 final size:22
Alignment explanation
Indices: 7865349--7865471 Score: 90
Period size: 22 Copynumber: 5.6 Consensus size: 22
7865339 AATTTAGACA
* * *
7865349 AAATTAATAACAACTTTATACT
1 AAATTAATGATAACTTTATAGT
* * *
7865371 AAATTAATGATAACTGTACAAT
1 AAATTAATGATAACTTTATAGT
*
7865393 AAATT-ATGGATAACTTAATAGT
1 AAATTAAT-GATAACTTTATAGT
* * *
7865415 AAAATAATAATAACTTAATAGT
1 AAATTAATGATAACTTTATAGT
* *
7865437 AAATAAATAATAA-TTTAGTAGT
1 AAATTAATGATAACTTTA-TAGT
7865459 AAA-TAATTGATAA
1 AAATTAA-TGATAA
7865472 AATTGTGTAT
Statistics
Matches: 81, Mismatches: 16, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
21 7 0.09
22 72 0.89
23 2 0.02
ACGTcount: A:0.53, C:0.06, G:0.07, T:0.34
Consensus pattern (22 bp):
AAATTAATGATAACTTTATAGT
Found at i:7865493 original size:81 final size:82
Alignment explanation
Indices: 7865401--7865697 Score: 190
Period size: 81 Copynumber: 3.5 Consensus size: 82
7865391 ATAAATTATG
* *
7865401 GATAACTTAATAGTAAAATAATAATAACTTAATAGTAAATAAATAATAATTTAGTAGTAAATAAT
1 GATAACATAATAGTAAAATAATAATAACTTAATAATAAATAAATAATAATTTAGTAGTAAATAAT
**
7865466 TGATAA-AATTGTGTAT
66 TGATAATAATTGTAAAT
* * * **
7865482 GATAACATAATAAT-AAATACATAATAACATAAT-TTGAAAT-AATAAATAATTTAACAGTAAAT
1 GATAACATAATAGTAAAATA-ATAATAACTTAATAAT-AAATAAAT-AATAATTTAGTAGTAAAT
* *
7865544 CATTTATACATAATTGTAAAT
63 AATTGATA-ATAATTGTAAAT
* * * * * * * *
7865565 GTATAACACATATTAGTAAATTAA-ATATAACTAAATAAAAAATAAATTATAACTTAGTAATTAA
1 G-AT-A-ACATAATAGTAAAATAATA-ATAACTTAATAATAAATAAATAATAATTTAGTAGTAAA
* ** *
7865629 TTATTGATAACTTAGTAATAAATCAAT
62 TAATTGAT-A---A-TAAT-TGTAAAT
* * * *
7865656 GATAACTTAATAGTAAATTAATGATAACTTAATAGTAAATAA
1 GATAACATAATAGTAAAATAATAATAACTTAATAATAAATAA
7865698 GAATCAGTTT
Statistics
Matches: 163, Mismatches: 35, Indels: 29
0.72 0.15 0.13
Matches are distributed among these distances:
80 9 0.06
81 50 0.31
82 1 0.01
83 9 0.06
84 2 0.01
85 2 0.01
86 38 0.23
87 8 0.05
88 31 0.19
89 2 0.01
90 6 0.04
91 5 0.03
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.35
Consensus pattern (82 bp):
GATAACATAATAGTAAAATAATAATAACTTAATAATAAATAAATAATAATTTAGTAGTAAATAAT
TGATAATAATTGTAAAT
Found at i:7865638 original size:22 final size:22
Alignment explanation
Indices: 7865581--7865695 Score: 106
Period size: 22 Copynumber: 5.2 Consensus size: 22
7865571 CACATATTAG
* *
7865581 TAAATTAAAT-ATAACTAAATAA
1 TAAATT-AATGATAACTTAGTAA
* * *
7865603 AAAATAAATTATAACTTAGTAA
1 TAAATTAATGATAACTTAGTAA
* *
7865625 TTAATTATTGATAACTTAGTAA
1 TAAATTAATGATAACTTAGTAA
* * *
7865647 TAAATCAATGATAACTTAATAG
1 TAAATTAATGATAACTTAGTAA
* *
7865669 TAAATTAATGATAACTTAATAG
1 TAAATTAATGATAACTTAGTAA
7865691 TAAAT
1 TAAAT
7865696 AAGAATCAGT
Statistics
Matches: 77, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
21 3 0.04
22 74 0.96
ACGTcount: A:0.53, C:0.05, G:0.06, T:0.36
Consensus pattern (22 bp):
TAAATTAATGATAACTTAGTAA
Found at i:7865695 original size:44 final size:44
Alignment explanation
Indices: 7865578--7865697 Score: 134
Period size: 44 Copynumber: 2.7 Consensus size: 44
7865568 TAACACATAT
* * * *
7865578 TAGTAAATTAAAT-ATAACTAAATAAAAAATAAATTATAACTTAG
1 TAGTAAATT-AATGATAACTTAATAATAAATAAATGATAACTTAA
* * * * *
7865622 TAATTAATTATTGATAACTTAGTAATAAATCAATGATAACTTAA
1 TAGTAAATTAATGATAACTTAATAATAAATAAATGATAACTTAA
*
7865666 TAGTAAATTAATGATAACTTAATAGTAAATAA
1 TAGTAAATTAATGATAACTTAATAATAAATAA
7865698 GAATCAGTTT
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
43 2 0.03
44 58 0.97
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.35
Consensus pattern (44 bp):
TAGTAAATTAATGATAACTTAATAATAAATAAATGATAACTTAA
Found at i:7866042 original size:22 final size:22
Alignment explanation
Indices: 7866017--7866479 Score: 103
Period size: 22 Copynumber: 21.0 Consensus size: 22
7866007 GGCTTAGTAA
7866017 TAAATCAATGATAATTTAATAG
1 TAAATCAATGATAATTTAATAG
* *
7866039 TAAAT-AATTTATAA-CTAAGTAG
1 TAAATCAA-TGATAATTTAA-TAG
* *
7866061 TAATTAAT-AATTGA-AAATTAAAAG
1 T-A--AATCAA-TGATAATTTAATAG
* *
7866085 TAAATCAAT-ATAACTTAATAA
1 TAAATCAATGATAATTTAATAG
* *
7866106 T-AATC-ATCAGTAAATTAATAG
1 TAAATCAATGA-TAATTTAATAG
* * *
7866127 TTAATCAGTAATAATTTAATATAG
1 TAAATCAATGATAATTT-A-ATAG
* *
7866151 TAAATTAGA-GATATAATTTAATAA
1 TAAATCA-ATG--ATAATTTAATAG
* * *
7866175 TATATCAATTATAATTTAGTAG
1 TAAATCAATGATAATTTAATAG
* * * *
7866197 TAAATTAGTAATAATATAATAG
1 TAAATCAATGATAATTTAATAG
* * * *
7866219 TCAAAGC-ATAATAACTTAATAA
1 T-AAATCAATGATAATTTAATAG
* ** * *
7866241 TAAATCAATTATAACATAGTTG
1 TAAATCAATGATAATTTAATAG
* ** * *
7866263 TAAATGC-ATAATAACATAGTTG
1 TAAAT-CAATGATAATTTAATAG
* * *
7866285 TAAATTAATGATAACTTCATA-
1 TAAATCAATGATAATTTAATAG
*
7866306 -AAA--AATGATAACTTAATAG
1 TAAATCAATGATAATTTAATAG
* * *
7866325 TTAATCATTGATAATTTAGTAG
1 TAAATCAATGATAATTTAATAG
* * * *
7866347 TAAATTAATGAAAACTTAGTAG
1 TAAATCAATGATAATTTAATAG
* * * *
7866369 TAAATTAGTGATAGTATAATAG
1 TAAATCAATGATAATTTAATAG
* * *
7866391 TAAATTTAAT-TTAGTTTAATAG
1 TAAA-TCAATGATAATTTAATAG
* * * *
7866413 TAATTAAATTATAAATTTAGTAG
1 TAAATCAATGAT-AATTTAATAG
* * * ** *
7866436 TGAAT-TATAAATAATTTAGCAA
1 TAAATCAAT-GATAATTTAATAG
7866458 TAAATCAATGATAATTTAATAG
1 TAAATCAATGATAATTTAATAG
7866480 CTAATTACTA
Statistics
Matches: 326, Mismatches: 84, Indels: 62
0.69 0.18 0.13
Matches are distributed among these distances:
18 14 0.04
19 2 0.01
20 11 0.03
21 35 0.11
22 194 0.60
23 29 0.09
24 22 0.07
25 12 0.04
26 7 0.02
ACGTcount: A:0.49, C:0.05, G:0.09, T:0.37
Consensus pattern (22 bp):
TAAATCAATGATAATTTAATAG
Found at i:7866569 original size:11 final size:11
Alignment explanation
Indices: 7866553--7866602 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
7866543 AGTAAATCAT
*
7866553 TAATAATTTAG
1 TAATAAATTAG
*
7866564 TAATAAATTAT
1 TAATAAATTAG
* *
7866575 TGATAACTTAG
1 TAATAAATTAG
*
7866586 TAATAAATTAC
1 TAATAAATTAG
7866597 TAATAA
1 TAATAA
7866603 CGCAATAGTA
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.50, C:0.04, G:0.06, T:0.40
Consensus pattern (11 bp):
TAATAAATTAG
Found at i:7866570 original size:22 final size:22
Alignment explanation
Indices: 7866545--7866867 Score: 116
Period size: 22 Copynumber: 14.3 Consensus size: 22
7866535 AGTATAATAG
7866545 TAAATCATTAATAATTTAGTAA
1 TAAATCATTAATAATTTAGTAA
* * *
7866567 TAAATTATTGATAACTTAGTAA
1 TAAATCATTAATAATTTAGTAA
* * *** * *
7866589 TAAATTACTAATAACGCAATAG
1 TAAATCATTAATAATTTAGTAA
* * * *
7866611 TAAAACATTAATAACTTAACT-G
1 TAAATCATTAATAA-TTTAGTAA
* * *
7866633 TAAATCAGTGATAATTTAGTTA
1 TAAATCATTAATAATTTAGTAA
* *
7866655 TAAATCAATGATAATTTAATTGTAAA
1 TAAATCATTAATAATTT-A--GT-AA
* * ** *
7866681 TTAGTTAATTATTAATAACTTTATAG
1 -TA---AATCATTAATAATTTAGTAA
*
7866707 TAAATCATTAATAACTTTA-TAG
1 TAAATCATTAATAA-TTTAGTAA
** *
7866729 TAAATCAGAAAATAACATTA-TAA
1 TAAATCA-TTAATAA-TTTAGTAA
* * *
7866752 TAAATTATTAATAACTTAATAA
1 TAAATCATTAATAATTTAGTAA
* * *
7866774 TAAATTATCAATAACTTAGTAA
1 TAAATCATTAATAATTTAGTAA
* * * *
7866796 TAAATCGTTTATAATTTAGCAG
1 TAAATCATTAATAATTTAGTAA
* * *
7866818 TAAATAATCT-ATAACTTAGTGA
1 TAAATCAT-TAATAATTTAGTAA
*
7866840 TAAATCA-TGATAATTTAGTAA
1 TAAATCATTAATAATTTAGTAA
7866861 TAAATCA
1 TAAATCA
7866868 ATGATAAGAT
Statistics
Matches: 226, Mismatches: 60, Indels: 31
0.71 0.19 0.10
Matches are distributed among these distances:
20 1 0.00
21 24 0.11
22 158 0.70
23 23 0.10
25 4 0.02
26 2 0.01
27 3 0.01
30 11 0.05
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.38
Consensus pattern (22 bp):
TAAATCATTAATAATTTAGTAA
Found at i:7866763 original size:11 final size:11
Alignment explanation
Indices: 7866739--7866800 Score: 63
Period size: 11 Copynumber: 5.6 Consensus size: 11
7866729 TAAATCAGAA
7866739 AATAACATTA-T
1 AATAA-ATTATT
7866750 AATAAATTATT
1 AATAAATTATT
* *
7866761 AATAACTTAAT
1 AATAAATTATT
*
7866772 AATAAATTATC
1 AATAAATTATT
* *
7866783 AATAACTTAGT
1 AATAAATTATT
7866794 AATAAAT
1 AATAAAT
7866801 CGTTTATAAT
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
10 4 0.10
11 37 0.90
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.37
Consensus pattern (11 bp):
AATAAATTATT
Found at i:7866880 original size:22 final size:21
Alignment explanation
Indices: 7866834--7866881 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
7866824 ATCTATAACT
* **
7866834 TAGTGATAAATCATGATAATT
1 TAGTAATAAATCATGATAAGA
7866855 TAGTAATAAATCAATGATAAGA
1 TAGTAATAAATC-ATGATAAGA
7866877 TAGTA
1 TAGTA
7866882 GTAAGTGAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.48, C:0.04, G:0.15, T:0.33
Consensus pattern (21 bp):
TAGTAATAAATCATGATAAGA
Found at i:7867174 original size:22 final size:22
Alignment explanation
Indices: 7867129--7867205 Score: 77
Period size: 22 Copynumber: 3.5 Consensus size: 22
7867119 TATATCATAA
* *
7867129 ATAACTTAGTACTAATTCAA-TG
1 ATAACTTAGTAGTAAAT-AATTG
*
7867151 ATAATTTAGTAGTAAATAATTG
1 ATAACTTAGTAGTAAATAATTG
*
7867173 ATAACTTAATAGCTAAAT-ATTG
1 ATAACTTAGTAG-TAAATAATTG
*
7867195 AAAACTTAGTA
1 ATAACTTAGTA
7867206 ATATATCAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
21 2 0.04
22 39 0.85
23 5 0.11
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.36
Consensus pattern (22 bp):
ATAACTTAGTAGTAAATAATTG
Found at i:7867339 original size:22 final size:22
Alignment explanation
Indices: 7867267--7867506 Score: 151
Period size: 22 Copynumber: 10.9 Consensus size: 22
7867257 AATTTAGCAA
* * * *
7867267 TAAATCACTAATAACGTAGTAA
1 TAAATCATTAATAACTTAATAG
* * * *
7867289 TAAGTCATTTATAACTTAGTTG
1 TAAATCATTAATAACTTAATAG
* * * **
7867311 TATATCAATAATAATTTTGTAG
1 TAAATCATTAATAACTTAATAG
* *
7867333 TAAATCATTGATAACTTTATAG
1 TAAATCATTAATAACTTAATAG
* * *
7867355 TAAATTAGTT-ATAACTTTATAA
1 TAAATCA-TTAATAACTTAATAG
* * * *
7867377 TAAATTATCAATAACTTAGTAC
1 TAAATCATTAATAACTTAATAG
*
7867399 TAAATCATTAATAACTTAATAA
1 TAAATCATTAATAACTTAATAG
* *
7867421 TAAATCATTTATAACTTAGTAG
1 TAAATCATTAATAACTTAATAG
* *
7867443 TAAATCATTAATAATTTAATAA
1 TAAATCATTAATAACTTAATAG
* * * *
7867465 TAAA-CTACTAATAACATAGTAA
1 TAAATC-ATTAATAACTTAATAG
* *
7867487 TGAATCAATAATAACTTAAT
1 TAAATCATTAATAACTTAAT
7867507 TGTCAATTGA
Statistics
Matches: 171, Mismatches: 43, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
21 2 0.01
22 166 0.97
23 3 0.02
ACGTcount: A:0.46, C:0.09, G:0.06, T:0.38
Consensus pattern (22 bp):
TAAATCATTAATAACTTAATAG
Found at i:7867341 original size:44 final size:44
Alignment explanation
Indices: 7867267--7867503 Score: 196
Period size: 44 Copynumber: 5.4 Consensus size: 44
7867257 AATTTAGCAA
* * * *
7867267 TAAATCACTAATAAC-GTAGTAATAAGTCATTTATAACTTAGTTG
1 TAAATCATTAATAACTTTA-TAATAAATCATTTATAACTTAGTAG
* * * * * *
7867311 TATATCAATAATAATTTTGTAGTAAATCATTGATAACTTTA-TAG
1 TAAATCATTAATAACTTTATAATAAATCATTTATAAC-TTAGTAG
* * ** *
7867355 TAAATTAGTT-ATAACTTTATAATAAATTATCAATAACTTAGTAC
1 TAAATCA-TTAATAACTTTATAATAAATCATTTATAACTTAGTAG
*
7867399 TAAATCATTAATAACTTAATAATAAATCATTTATAACTTAGTAG
1 TAAATCATTAATAACTTTATAATAAATCATTTATAACTTAGTAG
* * * *
7867443 TAAATCATTAATAA-TTTAATAATAAA-CTACTAATAACATAGTAA
1 TAAATCATTAATAACTTT-ATAATAAATC-ATTTATAACTTAGTAG
* *
7867487 TGAATCAATAATAACTT
1 TAAATCATTAATAACTT
7867504 AATTGTCAAT
Statistics
Matches: 153, Mismatches: 32, Indels: 15
0.76 0.16 0.08
Matches are distributed among these distances:
43 8 0.05
44 138 0.90
45 7 0.05
ACGTcount: A:0.46, C:0.09, G:0.06, T:0.38
Consensus pattern (44 bp):
TAAATCATTAATAACTTTATAATAAATCATTTATAACTTAGTAG
Found at i:7867347 original size:66 final size:65
Alignment explanation
Indices: 7867245--7867504 Score: 197
Period size: 66 Copynumber: 4.0 Consensus size: 65
7867235 ATAACATAAA
* * * * * *
7867245 AGTAAATCACT-A-AATTTAGCAATAAATCACTAATAACGTAGTAATAAGTCATTTATAACTTAG
1 AGTAAATCAATAATAATTTAGTACTAAATCATTAATAACTTA-TAATAAATCATTTATAACTTAG
7867308 T
65 T
* * * * * * * *
7867309 TGTATATCAATAATAATTTTGTAGTAAATCATTGATAACTTTATAGTAAATTAGTTATAACTTTA
1 AGTAAATCAATAATAATTTAGTACTAAATCATTAATAAC-TTATAATAAATCATTTATAAC-TTA
7867374 -T
64 GT
* * *
7867375 AATAAAT-TATCAATAACTTAGTACTAAATCATTAATAACTTAATAATAAATCATTTATAACTTA
1 AGTAAATCAAT-AATAATTTAGTACTAAATCATTAATAACTT-ATAATAAATCATTTATAACTTA
7867439 GT
64 GT
* * * * * * * *
7867441 AGTAAATCATTAATAATTTAATAATAAA-CTACTAATAACATAGTAATGAATCAATAATAACTTA
1 AGTAAATCAATAATAATTTAGTACTAAATC-ATTAATAACTTA-TAATAAATCATTTATAACTTA
7867505 ATTGTCAATT
Statistics
Matches: 151, Mismatches: 35, Indels: 18
0.74 0.17 0.09
Matches are distributed among these distances:
64 8 0.05
65 10 0.07
66 127 0.84
67 6 0.04
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.37
Consensus pattern (65 bp):
AGTAAATCAATAATAATTTAGTACTAAATCATTAATAACTTATAATAAATCATTTATAACTTAGT
Found at i:7867777 original size:22 final size:22
Alignment explanation
Indices: 7867735--7867777 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7867725 TCTGGATAAC
* * *
7867735 TTAATAGTAAATTATTCATATT
1 TTAATAATAAATTAGTAATATT
7867757 TTAATAATAAATTAGTAATAT
1 TTAATAATAAATTAGTAATAT
7867778 AACTTAGCAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.47
Consensus pattern (22 bp):
TTAATAATAAATTAGTAATATT
Found at i:7867826 original size:24 final size:22
Alignment explanation
Indices: 7867776--7867834 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 22
7867766 AATTAGTAAT
*
7867776 ATAACTTAGCAGTAAATCATCG
1 ATAACTTAGTAGTAAATCATCG
*
7867798 ATAACATGTAGTAGTAAATCAT-T
1 ATAAC-T-TAGTAGTAAATCATCG
7867821 ACTAACTTAGTAGT
1 A-TAACTTAGTAGT
7867835 TTTTTTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
22 12 0.38
23 3 0.09
24 17 0.53
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.32
Consensus pattern (22 bp):
ATAACTTAGTAGTAAATCATCG
Found at i:7876356 original size:115 final size:115
Alignment explanation
Indices: 7876154--7876385 Score: 410
Period size: 115 Copynumber: 2.0 Consensus size: 115
7876144 ATAGTATAAC
* *
7876154 ATAAAATCCAGCCAGGATATTGTTATAGATATGAGAAAATTTGCATTCAAGAATTTGTTATTCCT
1 ATAAAATCCAGCCAAGATATTGTTATAGATATGAGAAAATTTGCATTCAAGAATTTGCTATTCCT
* *
7876219 TTATCCTGAAATAATTGTTCACTTAAAATAACCCATCAATTACGAAATTA
66 TTATCCTCAAATAATTGTTCACTTAAAATAACCCATCAATTACAAAATTA
7876269 ATAAAATCCAGCCAAGATATTGTTATAGATATGAGAAAATTTGCATTCAAGAATTTGCTATTCCT
1 ATAAAATCCAGCCAAGATATTGTTATAGATATGAGAAAATTTGCATTCAAGAATTTGCTATTCCT
* *
7876334 TTATCTTCAAATAATTGTTCACTTAAAATAACCCATCGATTACAAAATTA
66 TTATCCTCAAATAATTGTTCACTTAAAATAACCCATCAATTACAAAATTA
7876384 AT
1 AT
7876386 TTTACAATGT
Statistics
Matches: 111, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
115 111 1.00
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (115 bp):
ATAAAATCCAGCCAAGATATTGTTATAGATATGAGAAAATTTGCATTCAAGAATTTGCTATTCCT
TTATCCTCAAATAATTGTTCACTTAAAATAACCCATCAATTACAAAATTA
Found at i:7881359 original size:20 final size:19
Alignment explanation
Indices: 7881328--7881365 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
7881318 CATTTTTTTA
7881328 AATTTTTATAAACATCTCT
1 AATTTTTATAAACATCTCT
*
7881347 AATTTTATATAAACCTCTC
1 AATTTT-TATAAACATCTC
7881366 AAAGTTAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.37, C:0.18, G:0.00, T:0.45
Consensus pattern (19 bp):
AATTTTTATAAACATCTCT
Found at i:7884231 original size:20 final size:19
Alignment explanation
Indices: 7884206--7884243 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
7884196 TCCGATGTTA
*
7884206 TAACAAAAATCAACAAAAAT
1 TAACAAAAACCAA-AAAAAT
7884226 TAACAAAAACCAAAAAAA
1 TAACAAAAACCAAAAAAA
7884244 GAAAAAAAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.74, C:0.16, G:0.00, T:0.11
Consensus pattern (19 bp):
TAACAAAAACCAAAAAAAT
Found at i:7894403 original size:16 final size:17
Alignment explanation
Indices: 7894384--7894431 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 17
7894374 AATATTTAAT
*
7894384 ATTATTAATATCAT-TA
1 ATTATTAATATAATATA
*
7894400 ATTATAAATATAATATA
1 ATTATTAATATAATATA
7894417 ATTTATTAAT-TAATA
1 A-TTATTAATATAATA
7894432 ATATTAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 12 0.44
17 8 0.30
18 7 0.26
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
ATTATTAATATAATATA
Found at i:7894409 original size:25 final size:25
Alignment explanation
Indices: 7894380--7894437 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
7894370 ATAAAATATT
7894380 TAATATTAT-TAATATCATTAATT-A
1 TAATATTATATAAT-TCATTAATTAA
* *
7894404 TAAATATAATATAATTTATTAATTAA
1 T-AATATTATATAATTCATTAATTAA
7894430 TAATATTA
1 TAATATTA
7894438 AAAAGTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
24 1 0.04
25 21 0.75
26 6 0.21
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (25 bp):
TAATATTATATAATTCATTAATTAA
Found at i:7904082 original size:24 final size:23
Alignment explanation
Indices: 7904055--7904125 Score: 61
Period size: 25 Copynumber: 3.0 Consensus size: 23
7904045 AAATATTACA
7904055 TTAATATTAATAATTTTAAAATCT
1 TTAATATTAATAATTTTAAAAT-T
* * *
7904079 TTAAAAATAAATATTTTTAAAATT
1 TT-AATATTAATAATTTTAAAATT
* * *
7904103 TAAATATTTAATTATGTTAAAAT
1 TTAATA-TTAATAATTTTAAAAT
7904126 AATTAATGAT
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
23 3 0.08
24 16 0.44
25 17 0.47
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (23 bp):
TTAATATTAATAATTTTAAAATT
Found at i:7904099 original size:16 final size:17
Alignment explanation
Indices: 7904078--7904111 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
7904068 TTTTAAAATC
7904078 TTTAAAA-ATAAATATT
1 TTTAAAATATAAATATT
*
7904094 TTTAAAATTTAAATATT
1 TTTAAAATATAAATATT
7904111 T
1 T
7904112 AATTATGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTTAAAATATAAATATT
Found at i:7904108 original size:17 final size:17
Alignment explanation
Indices: 7904069--7904111 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
7904059 TATTAATAAT
*
7904069 TTTAAA-ATCTTTAAAA
1 TTTAAATATTTTTAAAA
*
7904085 -ATAAATATTTTTAAAA
1 TTTAAATATTTTTAAAA
7904101 TTTAAATATTT
1 TTTAAATATTT
7904112 AATTATGTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
15 4 0.18
16 9 0.41
17 9 0.41
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (17 bp):
TTTAAATATTTTTAAAA
Found at i:7907984 original size:21 final size:21
Alignment explanation
Indices: 7907960--7908000 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7907950 GTACCAAACC
* *
7907960 CTTCTCTCTTTGTTTTCTTTT
1 CTTCTCTCTCTGTTTGCTTTT
7907981 CTTCTCTCTCTGTTTGCTTT
1 CTTCTCTCTCTGTTTGCTTT
7908001 GCTTTGCATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.00, C:0.27, G:0.07, T:0.66
Consensus pattern (21 bp):
CTTCTCTCTCTGTTTGCTTTT
Found at i:7915110 original size:6 final size:6
Alignment explanation
Indices: 7915099--7915134 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
7915089 CAGATAGAGT
7915099 CGAGAA CGAGAA CGAGAA CGAGAA CGAGAA CGAGAA
1 CGAGAA CGAGAA CGAGAA CGAGAA CGAGAA CGAGAA
7915135 TTATGCATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.50, C:0.17, G:0.33, T:0.00
Consensus pattern (6 bp):
CGAGAA
Found at i:7918753 original size:428 final size:429
Alignment explanation
Indices: 7917975--7918761 Score: 1504
Period size: 428 Copynumber: 1.8 Consensus size: 429
7917965 TCATTTTTAG
*
7917975 AAATGCATTTTCAAAAAACATATTGCACTAGATGATATTAATGCAACATGTTTTTCAAAAATGTA
1 AAATGCATTTTCAAAAAACATATTGCACTACATGATATTAATGCAACATGTTTTTCAAAAATGTA
7918040 TTTCCAAAAATAATGTTGCATTACCAAATATGCGTATCTGGTAATGCAACATGATTTTCAAAAAA
66 TTTCCAAAAATAATGTTGCATTACCAAATATGCGTATCTGGTAATGCAACATGATTTTCAAAAAA
7918105 TATATTTTTTAAAATTATTTTGCATTCCAAATATCCATTTCCATAAACATTAAAATTGTCAAGTA
131 TATATTTTTTAAAATTATTTTGCATTCCAAATATCCATTTCCATAAACATTAAAATTGTCAAGTA
7918170 ATAACATTATTATTTCCGCTTCCTAATGGTAGTATTATAATTTTTTAATATATTGTAATATGTAA
196 ATAACATTATTATTTCCGCTTCCTAATGGTAGTATTATAATTTTTTAATATATTGTAATATGTAA
* *
7918235 ATTAATTTAGAAACTATACTAATAAAGTATAATTAATCATCAGAAAATTTAGATACTAGATATAA
261 ATTAATTTAGAAACTATACTAATAAAGTATAATTAATCATAAAAAAATTTAGATACTAGATATAA
7918300 TTGCATGGATTCATTTACTATAGAAGAAGTAAAATTTTTGTAATGCAACATGAAAATTTTATGTT
326 TTGCATGGATTCATTTACTATAGAAGAAGTAAAATTTTTGTAATGCAACATGAAAATTTTATGTT
7918365 CACAAATATGGGTTTCTGATAATACAAAATAATTTTCGA
391 CACAAATATGGGTTTCTGATAATACAAAATAATTTTCGA
* *
7918404 AAATGCATTTTCAAAATACATATTGCATTACATGATATTAATGCAACATGTTTTTCAAAAATGTA
1 AAATGCATTTTCAAAAAACATATTGCACTACATGATATTAATGCAACATGTTTTTCAAAAATGTA
*
7918469 TTTCCAAAAATAATGTTGCATTACCAAATATGCGTATCTGGTAATGCAACATGATTTTC-GAAAA
66 TTTCCAAAAATAATGTTGCATTACCAAATATGCGTATCTGGTAATGCAACATGATTTTCAAAAAA
7918533 TATATTTTTTAAAATTATTTTGCATTCCAAATATCCATTTCCATAAACATTAAAATTGTCAAGTA
131 TATATTTTTTAAAATTATTTTGCATTCCAAATATCCATTTCCATAAACATTAAAATTGTCAAGTA
7918598 ATAACATTATTATTTCCGCTTCCTAATGGTAGTATTATAATTTTTTAATATATTGTAATATGTAA
196 ATAACATTATTATTTCCGCTTCCTAATGGTAGTATTATAATTTTTTAATATATTGTAATATGTAA
7918663 ATTAATTTAGAAACTATACTAATAAAGTATAATTAATCATAAAAAAATTTAGATACTAGATATAA
261 ATTAATTTAGAAACTATACTAATAAAGTATAATTAATCATAAAAAAATTTAGATACTAGATATAA
*
7918728 TTGCATGGATTCATTTACTATAGAAGAGGTAAAA
326 TTGCATGGATTCATTTACTATAGAAGAAGTAAAA
7918762 AAAATTTTTT
Statistics
Matches: 351, Mismatches: 7, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
428 230 0.66
429 121 0.34
ACGTcount: A:0.41, C:0.11, G:0.10, T:0.38
Consensus pattern (429 bp):
AAATGCATTTTCAAAAAACATATTGCACTACATGATATTAATGCAACATGTTTTTCAAAAATGTA
TTTCCAAAAATAATGTTGCATTACCAAATATGCGTATCTGGTAATGCAACATGATTTTCAAAAAA
TATATTTTTTAAAATTATTTTGCATTCCAAATATCCATTTCCATAAACATTAAAATTGTCAAGTA
ATAACATTATTATTTCCGCTTCCTAATGGTAGTATTATAATTTTTTAATATATTGTAATATGTAA
ATTAATTTAGAAACTATACTAATAAAGTATAATTAATCATAAAAAAATTTAGATACTAGATATAA
TTGCATGGATTCATTTACTATAGAAGAAGTAAAATTTTTGTAATGCAACATGAAAATTTTATGTT
CACAAATATGGGTTTCTGATAATACAAAATAATTTTCGA
Found at i:7921564 original size:13 final size:12
Alignment explanation
Indices: 7921535--7921576 Score: 57
Period size: 13 Copynumber: 3.3 Consensus size: 12
7921525 ATTGTCTAGC
*
7921535 ATATTAATGTAT
1 ATATTAATGTTT
7921547 ATATTAATAGTTT
1 ATATTAAT-GTTT
7921560 ATATTAATGTTGT
1 ATATTAATGTT-T
7921573 ATAT
1 ATAT
7921577 ATTGAACATG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 11 0.41
13 16 0.59
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (12 bp):
ATATTAATGTTT
Found at i:7921609 original size:31 final size:31
Alignment explanation
Indices: 7921570--7921669 Score: 114
Period size: 31 Copynumber: 3.3 Consensus size: 31
7921560 ATATTAATGT
7921570 TGTA-TATATTGAACATGTTATCTAATGGGA
1 TGTATTATATTGAACATGTTATCTAATGGGA
* * *
7921600 TGTGTTATATTTAACATATTATCTAATGGGA
1 TGTATTATATTGAACATGTTATCTAATGGGA
* * * *
7921631 TGCATTGTATTGAACAGGTAATCTAAT-GGA
1 TGTATTATATTGAACATGTTATCTAATGGGA
*
7921661 TGTTTTATA
1 TGTATTATA
7921670 AACATATTTT
Statistics
Matches: 56, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
30 12 0.21
31 44 0.79
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (31 bp):
TGTATTATATTGAACATGTTATCTAATGGGA
Found at i:7924261 original size:34 final size:33
Alignment explanation
Indices: 7924168--7924270 Score: 118
Period size: 34 Copynumber: 3.1 Consensus size: 33
7924158 TTTAATTTTT
* ** **
7924168 AGCTTACAGAAATAGATTTTCACAAGCTTTGAAA
1 AGCTTACAAAAATTCATTTTCGTAAGCTTT-AAA
*
7924202 AGCTTACAAAAATTCATTTTCGTAAGCCTTTTAA
1 AGCTTACAAAAATTCATTTTCGTAAG-CTTTAAA
7924236 AGCTTACAAAAATTCA-TTTCTGTAAGCTTTAAA
1 AGCTTACAAAAATTCATTTTC-GTAAGCTTTAAA
7924269 AG
1 AG
7924271 GTCTATGAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
33 12 0.20
34 44 0.73
35 4 0.07
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.34
Consensus pattern (33 bp):
AGCTTACAAAAATTCATTTTCGTAAGCTTTAAA
Found at i:7924389 original size:33 final size:32
Alignment explanation
Indices: 7924302--7924390 Score: 79
Period size: 33 Copynumber: 2.7 Consensus size: 32
7924292 AGAAATCTTC
***
7924302 AAAGCTTATAGAAATCCATTTATGTAAACTTT
1 AAAGCTTATAGAAATCCATTTCCCTAAACTTT
* * ** *
7924334 AAAGGTTTATGGAAATGGATTTCCCTAAGCTTT
1 AAA-GCTTATAGAAATCCATTTCCCTAAACTTT
*
7924367 AAAGACTTATAGAAATTCATTTCC
1 AAAG-CTTATAGAAATCCATTTCC
7924391 TTAATACATG
Statistics
Matches: 43, Mismatches: 12, Indels: 3
0.74 0.21 0.05
Matches are distributed among these distances:
32 4 0.09
33 39 0.91
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.36
Consensus pattern (32 bp):
AAAGCTTATAGAAATCCATTTCCCTAAACTTT
Found at i:7927034 original size:24 final size:24
Alignment explanation
Indices: 7927002--7927049 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
7926992 CTGCAAATGA
7927002 TAGAAACTTTATATAATTACACAT
1 TAGAAACTTTATATAATTACACAT
7927026 TAGAAACTTTATATAATTACACAT
1 TAGAAACTTTATATAATTACACAT
7927050 GCATAGAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.46, C:0.12, G:0.04, T:0.38
Consensus pattern (24 bp):
TAGAAACTTTATATAATTACACAT
Found at i:7931195 original size:17 final size:18
Alignment explanation
Indices: 7931173--7931209 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
7931163 ATAAAATTTA
*
7931173 ATGT-AAAAATTAATAAT
1 ATGTAAAAAATTAAAAAT
7931190 ATGTAAAAAATTAAAAAT
1 ATGTAAAAAATTAAAAAT
7931208 AT
1 AT
7931210 TATTTTGTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.32
Consensus pattern (18 bp):
ATGTAAAAAATTAAAAAT
Found at i:7931369 original size:13 final size:12
Alignment explanation
Indices: 7931341--7931390 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 12
7931331 TAACAAATTT
7931341 TTTTAATTTATTAA
1 TTTT-ATTT-TTAA
7931355 TTTTGATTTTTAA
1 TTTT-ATTTTTAA
7931368 TTTTATTTTT--
1 TTTTATTTTTAA
*
7931378 TATTATTTTTAA
1 TTTTATTTTTAA
7931390 T
1 T
7931391 AAAAAATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
10 9 0.28
12 7 0.22
13 8 0.25
14 8 0.25
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (12 bp):
TTTTATTTTTAA
Found at i:7934676 original size:55 final size:55
Alignment explanation
Indices: 7934583--7934689 Score: 133
Period size: 55 Copynumber: 1.9 Consensus size: 55
7934573 ATTCCCACTA
* * * * *
7934583 TATTCACCGAAAGTAATCAAGTGCTTCTGCTCACCAATTTTTGTTGAGCAAACTG
1 TATTCACCAAAAGAAACCAAGTGCTTCTGCTCACCAATTATTGTGGAGCAAACTG
* * * *
7934638 TATTCACCAAAAGAAACCAATTGCTTTTGCTTATCAATTATTGTGGAGCAAA
1 TATTCACCAAAAGAAACCAAGTGCTTCTGCTCACCAATTATTGTGGAGCAAA
7934690 TATCTAGCAT
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
55 43 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.33
Consensus pattern (55 bp):
TATTCACCAAAAGAAACCAAGTGCTTCTGCTCACCAATTATTGTGGAGCAAACTG
Found at i:7936114 original size:43 final size:43
Alignment explanation
Indices: 7936053--7936134 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
7936043 CAATAAAAGT
* * *
7936053 ACAATAAAGACACTTGAATTAGGAAAGTGAAATCTAAAGAAAC
1 ACAATAAAGACACTTGAATGAGAAAAGTGAAATATAAAGAAAC
*
7936096 ACAATACAGACACTTGAATGAGAAAAGTGAAATATAAAG
1 ACAATAAAGACACTTGAATGAGAAAAGTGAAATATAAAG
7936135 CAATATATGG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.54, C:0.11, G:0.17, T:0.18
Consensus pattern (43 bp):
ACAATAAAGACACTTGAATGAGAAAAGTGAAATATAAAGAAAC
Found at i:7937155 original size:25 final size:25
Alignment explanation
Indices: 7937126--7937174 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
7937116 ATTAAATAAA
* *
7937126 ATTCAATTTTTAACCCATATAAATT
1 ATTCAAATTTGAACCCATATAAATT
*
7937151 ATTCAAATTTGAATCCATATAAAT
1 ATTCAAATTTGAACCCATATAAAT
7937175 GATCCAACAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.02, T:0.41
Consensus pattern (25 bp):
ATTCAAATTTGAACCCATATAAATT
Found at i:7941404 original size:14 final size:12
Alignment explanation
Indices: 7941387--7941419 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
7941377 AATGAATTTA
7941387 TTTTTATGAGATT
1 TTTTTATGA-ATT
7941400 TTTTT-TGAATT
1 TTTTTATGAATT
7941411 TTTTTATGA
1 TTTTTATGA
7941420 GTATTTTGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 8 0.42
12 6 0.32
13 5 0.26
ACGTcount: A:0.21, C:0.00, G:0.12, T:0.67
Consensus pattern (12 bp):
TTTTTATGAATT
Found at i:7942929 original size:12 final size:12
Alignment explanation
Indices: 7942912--7942937 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7942902 ATCTTTAATT
7942912 ATAGTAATTATA
1 ATAGTAATTATA
7942924 ATAGTAATTATA
1 ATAGTAATTATA
7942936 AT
1 AT
7942938 TTACTTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (12 bp):
ATAGTAATTATA
Found at i:7945613 original size:31 final size:31
Alignment explanation
Indices: 7945572--7945665 Score: 134
Period size: 31 Copynumber: 3.0 Consensus size: 31
7945562 ATTTAAAAAC
* ** *
7945572 TTACACATTAATAAGATAATATTATCTGATT
1 TTACATATTAATAAGATGTTATCATCTGATT
*
7945603 TTACATATTAATTAGATGTTATCATCTGATT
1 TTACATATTAATAAGATGTTATCATCTGATT
*
7945634 TTACATATTAATGAGATGTTATCATCTGATT
1 TTACATATTAATAAGATGTTATCATCTGATT
7945665 T
1 T
7945666 ACTAATAATA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 57 1.00
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.46
Consensus pattern (31 bp):
TTACATATTAATAAGATGTTATCATCTGATT
Found at i:7946837 original size:14 final size:14
Alignment explanation
Indices: 7946818--7946851 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
7946808 AATTTTTTAT
7946818 TTAAATTTAAATCA
1 TTAAATTTAAATCA
*
7946832 TTAAATTTCAATCA
1 TTAAATTTAAATCA
7946846 TTAAAT
1 TTAAAT
7946852 AATTTTATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (14 bp):
TTAAATTTAAATCA
Found at i:7948712 original size:2 final size:2
Alignment explanation
Indices: 7948705--7948737 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
7948695 CAAAATTATG
*
7948705 AT AT AT AT AT AT AT AT AT AT AT A- AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7948738 CCTACTCGAC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:7951792 original size:17 final size:16
Alignment explanation
Indices: 7951771--7951833 Score: 72
Period size: 18 Copynumber: 3.7 Consensus size: 16
7951761 TTTTCTAAAC
7951771 TTTTTTATTTATTTTGA
1 TTTTTTATTT-TTTTGA
*
7951788 GTTTTTTATTTTTTAGA
1 -TTTTTTATTTTTTTGA
*
7951805 TTTTTCATTTTTTTGGA
1 TTTTTTATTTTTTT-GA
7951822 TTTTTGTATTTT
1 TTTTT-TATTTT
7951834 GAAAAACTCT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
16 12 0.31
17 12 0.31
18 15 0.38
ACGTcount: A:0.14, C:0.02, G:0.10, T:0.75
Consensus pattern (16 bp):
TTTTTTATTTTTTTGA
Found at i:7951801 original size:16 final size:16
Alignment explanation
Indices: 7951771--7951833 Score: 63
Period size: 17 Copynumber: 3.7 Consensus size: 16
7951761 TTTTCTAAAC
*
7951771 TTTTTTATTTATTTTGA
1 TTTTTTATTT-TTTAGA
7951788 GTTTTTTATTTTTTAGA
1 -TTTTTTATTTTTTAGA
* *
7951805 TTTTTCATTTTTTTGGA
1 TTTTTTA-TTTTTTAGA
7951822 TTTTTGTATTTT
1 TTTTT-TATTTT
7951834 GAAAAACTCT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
16 6 0.15
17 22 0.56
18 11 0.28
ACGTcount: A:0.14, C:0.02, G:0.10, T:0.75
Consensus pattern (16 bp):
TTTTTTATTTTTTAGA
Found at i:7952608 original size:84 final size:84
Alignment explanation
Indices: 7952452--7952612 Score: 196
Period size: 84 Copynumber: 1.9 Consensus size: 84
7952442 ATGTTGAGAG
* * * * * * *
7952452 ATCTTCTAAATCTCGATACTAAAATAAATTTAACTTGAAAAACTTACGAATCTTGGTCAGAGGAC
1 ATCTTATAAATCTCGACACTAAAACAAATTCAAATTGAAAAACTTACGAATCTTAGTCAGAAGAC
7952517 TTAGAAATTATGTATAGAT
66 TTAGAAATTATGTATAGAT
* * * * * *
7952536 ATCTTATAAATCTCGACACTAAAACATATTCAAATTGAAAGACTTATGAATCTTATTCGGAAGAT
1 ATCTTATAAATCTCGACACTAAAACAAATTCAAATTGAAAAACTTACGAATCTTAGTCAGAAGAC
*
7952601 TTTGAAATTATG
66 TTAGAAATTATG
7952613 CCCGAAAGTT
Statistics
Matches: 63, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
84 63 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (84 bp):
ATCTTATAAATCTCGACACTAAAACAAATTCAAATTGAAAAACTTACGAATCTTAGTCAGAAGAC
TTAGAAATTATGTATAGAT
Found at i:7952906 original size:129 final size:129
Alignment explanation
Indices: 7952744--7952994 Score: 484
Period size: 129 Copynumber: 1.9 Consensus size: 129
7952734 CCTTTAAACG
7952744 TAAGCTCCATAAATTTTAAAACATTCTACCTAGAAAACTTACATATTTTTCCCAAAGGACTTTAG
1 TAAGCTCCATAAATTTTAAAACATTCTACCTAGAAAACTTACATATTTTTCCCAAAGGACTTTAG
7952809 AAATCATTATTATCAATGCCCCGAGGTATTTGGAATGGTTCTTATCTTGTAACGTTGGTTTACA
66 AAATCATTATTATCAATGCCCCGAGGTATTTGGAATGGTTCTTATCTTGTAACGTTGGTTTACA
*
7952873 TAAGCTCCATAAATTTTAAAACATTCTACCTAGAAGACTTACATATTTTTCCCAAAGGACTTTAG
1 TAAGCTCCATAAATTTTAAAACATTCTACCTAGAAAACTTACATATTTTTCCCAAAGGACTTTAG
*
7952938 AAATCATTATTATCAATGCCTCGAGGTATTTGGAATGGTTCTTATCTTGTAACGTTG
66 AAATCATTATTATCAATGCCCCGAGGTATTTGGAATGGTTCTTATCTTGTAACGTTG
7952995 ATCTTGTTAG
Statistics
Matches: 120, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
129 120 1.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (129 bp):
TAAGCTCCATAAATTTTAAAACATTCTACCTAGAAAACTTACATATTTTTCCCAAAGGACTTTAG
AAATCATTATTATCAATGCCCCGAGGTATTTGGAATGGTTCTTATCTTGTAACGTTGGTTTACA
Found at i:7953555 original size:14 final size:14
Alignment explanation
Indices: 7953536--7953562 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7953526 ATCCTTTAAT
7953536 GATGCAAATGCAAA
1 GATGCAAATGCAAA
7953550 GATGCAAATGCAA
1 GATGCAAATGCAA
7953563 GTGTCTCTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.15, G:0.22, T:0.15
Consensus pattern (14 bp):
GATGCAAATGCAAA
Found at i:7954910 original size:19 final size:18
Alignment explanation
Indices: 7954888--7954955 Score: 68
Period size: 19 Copynumber: 3.7 Consensus size: 18
7954878 CATTCCATCA
7954888 TTTTATTCATTTTCCCTTT
1 TTTTATT-ATTTTCCCTTT
*
7954907 TTTTATTATTTTTCTCTTT
1 TTTTATTA-TTTTCCCTTT
* *
7954926 GTTTT-TT-TCTTGCCTTT
1 -TTTTATTATTTTCCCTTT
7954943 TTTTATTATTTTC
1 TTTTATTATTTTC
7954956 TTCCCTTTAC
Statistics
Matches: 39, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
16 4 0.10
17 9 0.23
18 4 0.10
19 18 0.46
20 4 0.10
ACGTcount: A:0.09, C:0.15, G:0.03, T:0.74
Consensus pattern (18 bp):
TTTTATTATTTTCCCTTT
Found at i:7956507 original size:21 final size:21
Alignment explanation
Indices: 7956481--7956524 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
7956471 TTTTTTTTAT
*
7956481 CAAGCCAAGGTGAGAAATAAG
1 CAAGCCAAGATGAGAAATAAG
7956502 CAAGCCAAGATGAGAAATAAG
1 CAAGCCAAGATGAGAAATAAG
7956523 CA
1 CA
7956525 CATACATGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.50, C:0.16, G:0.25, T:0.09
Consensus pattern (21 bp):
CAAGCCAAGATGAGAAATAAG
Found at i:7957522 original size:51 final size:50
Alignment explanation
Indices: 7957459--7957558 Score: 137
Period size: 51 Copynumber: 2.0 Consensus size: 50
7957449 ATGAATTTAA
* ** *
7957459 TAATAAAATCAATCAAAAAAATAAAGAAATTTGAAATTAAAAGTGAAAATT
1 TAATAAAATCAATCAAAAAAATAAACAAATTAAAAATGAAAA-TGAAAATT
* *
7957510 TAATGAAATCAATCAAAAGAATAAACAAATTAAAAATGAAAATGAAAAT
1 TAATAAAATCAATCAAAAAAATAAACAAATTAAAAATGAAAATGAAAAT
7957559 GTGATTTAAG
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
50 7 0.16
51 36 0.84
ACGTcount: A:0.64, C:0.05, G:0.08, T:0.23
Consensus pattern (50 bp):
TAATAAAATCAATCAAAAAAATAAACAAATTAAAAATGAAAATGAAAATT
Found at i:7957897 original size:2 final size:2
Alignment explanation
Indices: 7957890--7957920 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
7957880 CTGAAATGAA
*
7957890 AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7957921 GACACACACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:7959031 original size:19 final size:20
Alignment explanation
Indices: 7958995--7959032 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
7958985 TGTATAGATA
*
7958995 ATTTTCAAATTGATAAATAT
1 ATTTTCAAATTGAAAAATAT
*
7959015 ATTTTC-AATTTAAAAATA
1 ATTTTCAAATTGAAAAATA
7959033 GACTAAATGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 10 0.62
20 6 0.38
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (20 bp):
ATTTTCAAATTGAAAAATAT
Found at i:7963299 original size:20 final size:20
Alignment explanation
Indices: 7963276--7963322 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
7963266 TAAATTAGAA
7963276 AGAACAATATTCAAAATTGG
1 AGAACAATATTCAAAATTGG
7963296 AGAACAATATTCAAAATTGG
1 AGAACAATATTCAAAATTGG
7963316 AG-ACAAT
1 AGAACAAT
7963323 TTGAGTAACC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 5 0.19
20 22 0.81
ACGTcount: A:0.51, C:0.11, G:0.15, T:0.23
Consensus pattern (20 bp):
AGAACAATATTCAAAATTGG
Found at i:7967850 original size:39 final size:39
Alignment explanation
Indices: 7967796--7967874 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
7967786 GCAAGCACCC
*
7967796 CATACAATATGCAAGATGATCAAGATCAATGTTTTCTCT
1 CATACAATATGCAAGATGATCAAGATCAATGCTTTCTCT
*
7967835 CATACAATATGCAAGATGATCAAGATTAATGCTTTCTCT
1 CATACAATATGCAAGATGATCAAGATCAATGCTTTCTCT
7967874 C
1 C
7967875 TCATTCTACT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (39 bp):
CATACAATATGCAAGATGATCAAGATCAATGCTTTCTCT
Found at i:7969536 original size:3 final size:3
Alignment explanation
Indices: 7969528--7969586 Score: 100
Period size: 3 Copynumber: 19.7 Consensus size: 3
7969518 GCCTGCCTTG
*
7969528 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
7969576 TAT TAA TAA TA
1 TAA TAA TAA TA
7969587 CAGGTTCAAC
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:7979594 original size:8 final size:9
Alignment explanation
Indices: 7979558--7979597 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
7979548 TTATTTATTT
*
7979558 ATATATCTA
1 ATATATATA
7979567 ATATATATA
1 ATATATATA
7979576 TATATATATA
1 -ATATATATA
7979586 ATATA-ATA
1 ATATATATA
7979594 ATAT
1 ATAT
7979598 GCATAAATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
8 7 0.24
9 13 0.45
10 9 0.31
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (9 bp):
ATATATATA
Found at i:7980593 original size:257 final size:265
Alignment explanation
Indices: 7980210--7980737 Score: 788
Period size: 260 Copynumber: 2.0 Consensus size: 265
7980200 TCTTCTACAA
* * *
7980210 ATTTAAGACTACAAATATAATGTGTTATATATCAATTTCTTTTTTATTTTTTCCAATAACTTTTT
1 ATTTAAGACTACAAATATAATGTATTATACATCAA-TTCTTTTTTATTTTTTCCAATAACTTGTT
*
7980275 TAAGGTATATTCTATTACTATTACAATTTGTTTTTTTTTTTTATAAATTTTTTCTAAGATATATT
65 TAAGGTATATTCTATTACTATTACAA-TTGTTTTTTTTGTTTATAAATTTTTTCTAAGATATATT
* *
7980340 TTATTGTTGTTACAGTTTTATTCTTAT-AAAAA-AA-ATTTT-AATTTATTTTTTTCCACATATT
129 TTATTGTTATTACAGTTTCATTCTTATGAAAAATAATATTTTCAATTTA-TTTTTT-CACATATT
* * **
7980401 TTCTAACATTTTTCATATTTTGTATAATAATTTAGTTAAGATTACTAAAGTGCAAGTGTGCTAAT
192 TTCTAACATTTTTCATATTTTGTATAAGAATTTAGTCAAGATTACTAAAGTAAAAGTGTGCTAAT
7980466 ATTTCTTTT
257 ATTTCTTTT
* *
7980475 ATTTAAGACTACAAATATAATGTATTATACATCAA-T-TTTTTTATTTTTTTC-GTAAC-TGTTT
1 ATTTAAGACTACAAATATAATGTATTATACATCAATTCTTTTTTATTTTTTCCAATAACTTGTTT
*
7980536 AAGGTATATTCTATTACTATTATAA-T-TTTTTTTTGTTTATAAATTTTTTCTAAGATATATTTT
66 AAGGTATATTCTATTACTATTACAATTGTTTTTTTTGTTTATAAATTTTTTCTAAGATATATTTT
* *
7980599 ATTGTTATTATAGTTTCATTCTTATGAAAAATAATTTTTTTCAATTTATTTTTTCACATATTTTC
131 ATTGTTATTACAGTTTCATTCTTATGAAAAATAA-TATTTTCAATTTATTTTTTCACATATTTTC
* *
7980664 TAACATTTTTCATATTTTGTATAAGAATTTAGTCAATATTACTAAAGTAAAAGTGTGTTAATATT
195 TAACATTTTTCATATTTTGTATAAGAATTTAGTCAAGATTACTAAAGTAAAAGTGTGCTAATATT
7980729 TCTTTT
260 TCTTTT
7980735 ATT
1 ATT
7980738 ATTTAATTTA
Statistics
Matches: 241, Mismatches: 17, Indels: 15
0.88 0.06 0.05
Matches are distributed among these distances:
257 58 0.24
258 6 0.02
259 2 0.01
260 107 0.44
261 14 0.06
262 20 0.08
263 1 0.00
265 33 0.14
ACGTcount: A:0.31, C:0.08, G:0.07, T:0.54
Consensus pattern (265 bp):
ATTTAAGACTACAAATATAATGTATTATACATCAATTCTTTTTTATTTTTTCCAATAACTTGTTT
AAGGTATATTCTATTACTATTACAATTGTTTTTTTTGTTTATAAATTTTTTCTAAGATATATTTT
ATTGTTATTACAGTTTCATTCTTATGAAAAATAATATTTTCAATTTATTTTTTCACATATTTTCT
AACATTTTTCATATTTTGTATAAGAATTTAGTCAAGATTACTAAAGTAAAAGTGTGCTAATATTT
CTTTT
Found at i:7997638 original size:6 final size:6
Alignment explanation
Indices: 7997603--7997824 Score: 126
Period size: 7 Copynumber: 34.0 Consensus size: 6
7997593 TGCTTTGGCC
7997603 AAACCT AAATCCT AAACCCT AAAGCCT AAACCT AAACCT AAACCT AAACCT
1 AAACCT AAA-CCT AAA-CCT AAA-CCT AAACCT AAACCT AAACCT AAACCT
* *** * *
7997654 AAACTCT AAACCC AAACCCT AAATAG AAACCT AAACTT AAACTCT AAACCC
1 AAAC-CT AAACCT AAA-CCT AAACCT AAACCT AAACCT AAAC-CT AAACCT
* *
7997705 AAACTCT AAACAT AAACCCT AAAAGCC- AAACTCT AAACCTT AAAACTT
1 AAAC-CT AAACCT AAA-CCT -AAA-CCT AAAC-CT AAACC-T -AAACCT
* * * *
7997753 GAACCCT -AACCTT AGACCTT TAACC- AAACACT AATCCT AAACCCT AAAGCCT
1 -AAACCT AAACC-T AAACC-T AAACCT AAAC-CT AAACCT AAA-CCT AAA-CCT
7997805 AAAACCCT AAACCT AAACCT
1 -AAA-CCT AAACCT AAACCT
7997825 TAACTCCTAA
Statistics
Matches: 169, Mismatches: 30, Indels: 34
0.73 0.13 0.15
Matches are distributed among these distances:
5 7 0.04
6 73 0.43
7 74 0.44
8 15 0.09
ACGTcount: A:0.46, C:0.32, G:0.03, T:0.19
Consensus pattern (6 bp):
AAACCT
Found at i:7997663 original size:38 final size:38
Alignment explanation
Indices: 7997603--7997743 Score: 153
Period size: 38 Copynumber: 3.7 Consensus size: 38
7997593 TGCTTTGGCC
* * * *
7997603 AAACCTAAATCCTAAACCCTAAAGCCTAAACCTAAACCT
1 AAACCTAAAGCCTAAACTCTAAA-CCCAAACCTAAACAT
* *
7997642 AAACCTAAA-CCTAAACTCTAAACCCAAACCCTAAATAG
1 AAACCTAAAGCCTAAACTCTAAACCCAAA-CCTAAACAT
*
7997680 AAACCTAAA-CTTAAACTCTAAACCCAAACTCTAAACAT
1 AAACCTAAAGCCTAAACTCTAAACCCAAAC-CTAAACAT
7997718 AAACCCTAAAAGCC-AAACTCTAAACC
1 AAA-CCT-AAAGCCTAAACTCTAAACC
7997744 TTAAAACTTG
Statistics
Matches: 88, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
37 6 0.07
38 54 0.61
39 12 0.14
40 15 0.17
41 1 0.01
ACGTcount: A:0.49, C:0.32, G:0.02, T:0.17
Consensus pattern (38 bp):
AAACCTAAAGCCTAAACTCTAAACCCAAACCTAAACAT
Found at i:7997807 original size:14 final size:13
Alignment explanation
Indices: 7997606--7997823 Score: 127
Period size: 13 Copynumber: 17.1 Consensus size: 13
7997596 TTTGGCCAAA
7997606 CCTAAATCCTAAAC
1 CCTAAA-CCTAAAC
7997620 CCTAAAGCCTAAA-
1 CCTAAA-CCTAAAC
7997633 CCTAAACCTAAA-
1 CCTAAACCTAAAC
7997645 CCTAAACCTAAAC
1 CCTAAACCTAAAC
* *
7997658 TCTAAACCCAAAC
1 CCTAAACCTAAAC
*
7997671 CCTAAA--TAGAAA
1 CCTAAACCTA-AAC
*
7997683 CCTAAACTTAAAC
1 CCTAAACCTAAAC
* *
7997696 TCTAAACCCAAAC
1 CCTAAACCTAAAC
* *
7997709 TCTAAACATAAAC
1 CCTAAACCTAAAC
*
7997722 CCT--A---AAAG
1 CCTAAACCTAAAC
7997730 CC-AAACTCTAAAC
1 CCTAAAC-CTAAAC
* * *
7997743 CTTAAAACTTGAAC
1 CCT-AAACCTAAAC
*
7997757 CCT-AACCTTAGAC
1 CCTAAACC-TAAAC
* *
7997770 CTTTAACC-AAAC
1 CCTAAACCTAAAC
* *
7997782 ACTAATCCTAAAC
1 CCTAAACCTAAAC
7997795 CCTAAAGCCTAAAAC
1 CCTAAA-CCT-AAAC
7997810 CCTAAACCTAAAC
1 CCTAAACCTAAAC
7997823 C
1 C
7997824 TTAACTCCTA
Statistics
Matches: 157, Mismatches: 30, Indels: 35
0.71 0.14 0.16
Matches are distributed among these distances:
8 5 0.03
9 1 0.01
11 2 0.01
12 36 0.23
13 69 0.44
14 30 0.19
15 14 0.09
ACGTcount: A:0.46, C:0.33, G:0.03, T:0.19
Consensus pattern (13 bp):
CCTAAACCTAAAC
Found at i:7997811 original size:15 final size:14
Alignment explanation
Indices: 7997778--7997821 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 14
7997768 ACCTTTAACC
* *
7997778 AAACACTAATCCT-
1 AAACCCTAAACCTA
7997791 AAACCCTAAAGCCTA
1 AAACCCTAAA-CCTA
7997806 AAACCCTAAACCTA
1 AAACCCTAAACCTA
7997820 AA
1 AA
7997822 CCTTAACTCC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
13 8 0.30
14 9 0.33
15 10 0.37
ACGTcount: A:0.50, C:0.32, G:0.02, T:0.16
Consensus pattern (14 bp):
AAACCCTAAACCTA
Found at i:7997838 original size:28 final size:28
Alignment explanation
Indices: 7997606--7997744 Score: 88
Period size: 25 Copynumber: 5.3 Consensus size: 28
7997596 TTTGGCCAAA
7997606 CCTAAATCCTAAACCCTAAAGCCT-AAA-
1 CCTAAA-CCTAAACCCTAAAGCCTAAAAC
7997633 CCTAAACCTAAA-CCTAAA-CCT-AAAC
1 CCTAAACCTAAACCCTAAAGCCTAAAAC
* *
7997658 TCTAAACCCAAACCCTAAA---TAGAAA-
1 CCTAAACCTAAACCCTAAAGCCTA-AAAC
* * *
7997683 CCTAAACTTAAACTCTAAA-CC-CAAAC
1 CCTAAACCTAAACCCTAAAGCCTAAAAC
* *
7997709 TCTAAACATAAACCCTAAAAGCC--AAAC
1 CCTAAACCTAAACCCT-AAAGCCTAAAAC
*
7997736 TCTAAACCT
1 CCTAAACCT
7997745 TAAAACTTGA
Statistics
Matches: 92, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
24 7 0.08
25 34 0.37
26 28 0.30
27 21 0.23
28 2 0.02
ACGTcount: A:0.47, C:0.32, G:0.02, T:0.18
Consensus pattern (28 bp):
CCTAAACCTAAACCCTAAAGCCTAAAAC
Found at i:8006194 original size:34 final size:34
Alignment explanation
Indices: 8006106--8006200 Score: 115
Period size: 34 Copynumber: 2.8 Consensus size: 34
8006096 ACATATTTTT
*
8006106 GAAAACTTTTAAAAATTTTCAAAAATGAATATCC
1 GAAAACTTTTCAAAATTTTCAAAAATGAATATCC
*
8006140 GAAAACTTTTCAAAATTTTCAAAAAT-ATATTTCC
1 GAAAACTTTTCAAAATTTTCAAAAATGA-ATATCC
*
8006174 -AAAACTTCTTC-TAATATTTCAAAAATG
1 GAAAACTT-TTCAAAAT-TTTCAAAAATG
8006201 CATTTTCAAA
Statistics
Matches: 54, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
33 11 0.20
34 43 0.80
ACGTcount: A:0.46, C:0.14, G:0.04, T:0.36
Consensus pattern (34 bp):
GAAAACTTTTCAAAATTTTCAAAAATGAATATCC
Found at i:8009895 original size:27 final size:27
Alignment explanation
Indices: 8009862--8009945 Score: 150
Period size: 27 Copynumber: 3.1 Consensus size: 27
8009852 ATAAACATAG
*
8009862 ATTCCATTAATGAAACAGTCATATTGC
1 ATTCCATCAATGAAACAGTCATATTGC
8009889 ATTCCATCAATGAAACAGTCATATTGC
1 ATTCCATCAATGAAACAGTCATATTGC
*
8009916 ATTCCATCAATGAAACAGTCACATTGC
1 ATTCCATCAATGAAACAGTCATATTGC
8009943 ATT
1 ATT
8009946 TCAAGTTTGG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.31
Consensus pattern (27 bp):
ATTCCATCAATGAAACAGTCATATTGC
Found at i:8013230 original size:17 final size:17
Alignment explanation
Indices: 8013192--8013244 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
8013182 TTTTTATTAT
* *
8013192 ATTTTT-TATAATTTCA
1 ATTTTTATATTATTTTA
8013208 ATTTTT-TAATGTATTTTA
1 ATTTTTAT-AT-TATTTTA
8013226 ATTTTTATATTATTTTA
1 ATTTTTATATTATTTTA
8013243 AT
1 AT
8013245 AAAAGAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
16 7 0.22
17 11 0.34
18 13 0.41
19 1 0.03
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (17 bp):
ATTTTTATATTATTTTA
Found at i:8015557 original size:16 final size:16
Alignment explanation
Indices: 8015525--8015618 Score: 77
Period size: 17 Copynumber: 5.8 Consensus size: 16
8015515 GGATTTTAGG
8015525 TTTTAGGGGTTTGGAA
1 TTTTAGGGGTTTGGAA
8015541 TTTTATGGGGTTT-GAA
1 TTTTA-GGGGTTTGGAA
* * *
8015557 TTTAAGGGATTTTGGAT
1 TTTTAGGG-GTTTGGAA
8015574 TTTTAGGGGTTTCGG-A
1 TTTTAGGGGTTT-GGAA
*
8015590 TTTTAAGGGATTTTGG-A
1 TTTT-AGGG-GTTTGGAA
*
8015607 TTTTAAGGGTTT
1 TTTTAGGGGTTT
8015619 CGTATTCTAA
Statistics
Matches: 63, Mismatches: 9, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
15 6 0.10
16 25 0.40
17 29 0.46
18 3 0.05
ACGTcount: A:0.19, C:0.01, G:0.32, T:0.48
Consensus pattern (16 bp):
TTTTAGGGGTTTGGAA
Done.