Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15507587
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 49 of 91
Found at i:8015600 original size:34 final size:33
Alignment explanation
Indices: 8015534--8015620 Score: 115
Period size: 33 Copynumber: 2.6 Consensus size: 33
8015524 GTTTTAGGGG
8015534 TTTGGAATTTTATGGGGTTT--GAATTTAAGGGAT
1 TTTGG-ATTTTA-GGGGTTTCGGAATTTAAGGGAT
*
8015567 TTTGGATTTTTAGGGGTTTCGGATTTTAAGGGAT
1 TTTGGA-TTTTAGGGGTTTCGGAATTTAAGGGAT
*
8015601 TTTGGATTTTAAGGGTTTCG
1 TTTGGATTTTAGGGGTTTCG
8015621 TATTCTAATG
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
32 8 0.16
33 23 0.47
34 18 0.37
ACGTcount: A:0.20, C:0.02, G:0.31, T:0.47
Consensus pattern (33 bp):
TTTGGATTTTAGGGGTTTCGGAATTTAAGGGAT
Found at i:8015617 original size:33 final size:34
Alignment explanation
Indices: 8015557--8015620 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
8015547 GGGGTTTGAA
*
8015557 TTTAAGGGATTTTGGATTTTTAGGGGTTTCGGAT
1 TTTAAGGGATTTTGGATTTTTAAGGGTTTCGGAT
8015591 TTTAAGGGATTTTGGA-TTTTAAGGGTTTCG
1 TTTAAGGGATTTTGGATTTTTAAGGGTTTCG
8015621 TATTCTAATG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 13 0.45
34 16 0.55
ACGTcount: A:0.19, C:0.03, G:0.31, T:0.47
Consensus pattern (34 bp):
TTTAAGGGATTTTGGATTTTTAAGGGTTTCGGAT
Found at i:8017036 original size:3 final size:3
Alignment explanation
Indices: 8017030--8017084 Score: 60
Period size: 3 Copynumber: 19.0 Consensus size: 3
8017020 TTCTTTTTTT
* * **
8017030 TTA TTA TTA -TA TTT TTA -AA TTA TTA TTA TTA TTA TTA TTA AAA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8017076 TTA TTA TTA
1 TTA TTA TTA
8017085 AATTGAAATG
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
2 3 0.07
3 39 0.93
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:8017482 original size:34 final size:34
Alignment explanation
Indices: 8017432--8017499 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
8017422 ATTAAGGATT
* *
8017432 AGGATTAAACCGTGAATCAGAGAATAAAGAGATC
1 AGGATTAAACCATGAATCAAAGAATAAAGAGATC
*
8017466 AGGATTAAATCATGAATCAAAGAATAAAGAGATC
1 AGGATTAAACCATGAATCAAAGAATAAAGAGATC
8017500 GAGATTTAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.50, C:0.10, G:0.21, T:0.19
Consensus pattern (34 bp):
AGGATTAAACCATGAATCAAAGAATAAAGAGATC
Found at i:8017517 original size:34 final size:34
Alignment explanation
Indices: 8017445--8017520 Score: 100
Period size: 34 Copynumber: 2.2 Consensus size: 34
8017435 ATTAAACCGT
* *
8017445 GAATCAGAGAATAAAGAGATCAGGATTAAATCAT
1 GAATCAAAGAATAAAGAGATCAGGATTAAATCAC
* *
8017479 GAATCAAAGAATAAAGAGATC-GAGATTTAATCGC
1 GAATCAAAGAATAAAGAGATCAG-GATTAAATCAC
8017513 GAATCAAA
1 GAATCAAA
8017521 AAATGACGTT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
33 1 0.03
34 36 0.97
ACGTcount: A:0.50, C:0.11, G:0.20, T:0.20
Consensus pattern (34 bp):
GAATCAAAGAATAAAGAGATCAGGATTAAATCAC
Found at i:8017666 original size:174 final size:173
Alignment explanation
Indices: 8017456--8017872 Score: 579
Period size: 174 Copynumber: 2.4 Consensus size: 173
8017446 AATCAGAGAA
* * * * * *
8017456 TAAAGAGATCAGGATTAAATCATGAATCAAAGAATAAAGAGATCGAGATTTAATCGCGAATCAAA
1 TAAAGAGATCAGGATTGAACCGTAAATC-AAGAATAAAGAGATCGAGATTAAATCGCGAGTCAAA
* * *
8017521 AAATGACGTTAATTTGGATTGAATCACAAGTTAAAAAATAAGAAGACCGGGAATAAACCACGAGT
65 AAATGACGTTAACTTGGATTGAATCACAAGTCAAAAAATAAGAAGACCGAGAATAAACCACGAGT
* *
8017586 TAAAGG-TTAACAACAACAATCAAGATTAAATTATGATTTTAAAT
130 T-AAGGATTAACAACAACAATCAAGATTAAACTACGATTTTAAAT
*
8017630 TAAAGAGATC-GAGATTGAACCGTAAATCGAAGAATAAAGAGATCGAGATTAAACCGCGAGTCAA
1 TAAAGAGATCAG-GATTGAACCGTAAATC-AAGAATAAAGAGATCGAGATTAAATCGCGAGTCAA
*
8017694 AAAATGACGTTAACTTGGATTGAATCACAAGTCATAAAATAAGAAGACCGAGAATAAACCACGAG
64 AAAATGACGTTAACTTGGATTGAATCACAAGTCAAAAAATAAGAAGACCGAGAATAAACCACGAG
* * *
8017759 TTAGGGATTAACAACAATAATCGAGATTAAACTACGATTTTAAAT
129 TTAAGGATTAACAACAACAATCAAGATTAAACTACGATTTTAAAT
* * * *
8017804 TAAAGAGATCAGGATTGAATCGTAAATCAGAGAATAAAAAGA-CCAGGATTAAATCACGAGTCAA
1 TAAAGAGATCAGGATTGAACCGTAAATCA-AGAATAAAGAGATCGA-GATTAAATCGCGAGTCAA
8017868 AAAAT
64 AAAAT
8017873 AAGAAGACCG
Statistics
Matches: 216, Mismatches: 22, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
173 7 0.03
174 208 0.96
175 1 0.00
ACGTcount: A:0.48, C:0.12, G:0.18, T:0.22
Consensus pattern (173 bp):
TAAAGAGATCAGGATTGAACCGTAAATCAAGAATAAAGAGATCGAGATTAAATCGCGAGTCAAAA
AATGACGTTAACTTGGATTGAATCACAAGTCAAAAAATAAGAAGACCGAGAATAAACCACGAGTT
AAGGATTAACAACAACAATCAAGATTAAACTACGATTTTAAAT
Found at i:8017874 original size:34 final size:34
Alignment explanation
Indices: 8017836--8017900 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
8017826 TAAATCAGAG
* *
8017836 AATAAAAAGACC-AGGATTAAATCACGAGTCAAAA
1 AATAAAAAGACCGA-GAATAAACCACGAGTCAAAA
*
8017870 AATAAGAAGACCGAGAATAAACCACGAGTCA
1 AATAAAAAGACCGAGAATAAACCACGAGTCA
8017901 GGGGTTAACA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
34 26 0.96
35 1 0.04
ACGTcount: A:0.54, C:0.17, G:0.17, T:0.12
Consensus pattern (34 bp):
AATAAAAAGACCGAGAATAAACCACGAGTCAAAA
Found at i:8017973 original size:136 final size:137
Alignment explanation
Indices: 8017710--8018008 Score: 465
Period size: 136 Copynumber: 2.2 Consensus size: 137
8017700 ACGTTAACTT
* * * *
8017710 GGATTGAATCACAAGTCATAAAATAAGAAGACCGAGAATAAACCACGAGTTAGGGATTAACAACA
1 GGATTAAATCACGAGTCAAAAAATAAGAAGACCGAGAATAAACCACGAGTCAGGGATTAACAAC-
*
8017775 ATAATCGAGATTAAACTACGATTTTAAATTAAAGAGATCAGGATTGAATCGTAAATCAGAGAATA
65 A-AATCGAGATTAAACTACGATTTTAAATTAAAGAGATCAGGATTGAATCGCAAATCAGAGAATA
8017840 AAAAGACCA
129 AAAAGACCA
*
8017849 GGATTAAATCACGAGTCAAAAAATAAGAAGACCGAGAATAAACCACGAGTCAGGGGTTAACAAC-
1 GGATTAAATCACGAGTCAAAAAATAAGAAGACCGAGAATAAACCACGAGTCAGGGATTAACAACA
* * **
8017913 AATCGAGATTAAACTACGATTTTAAATTAAAGAGATCGGGATTGAATCGCGAATTGGAGAATAAA
66 AATCGAGATTAAACTACGATTTTAAATTAAAGAGATCAGGATTGAATCGCAAATCAGAGAATAAA
* *
8017978 GAGATCA
131 AAGACCA
8017985 GGATTAAATCACGAGTCAAAAAAT
1 GGATTAAATCACGAGTCAAAAAAT
8018009 GACATTAACT
Statistics
Matches: 148, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
136 89 0.60
139 59 0.40
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.20
Consensus pattern (137 bp):
GGATTAAATCACGAGTCAAAAAATAAGAAGACCGAGAATAAACCACGAGTCAGGGATTAACAACA
AATCGAGATTAAACTACGATTTTAAATTAAAGAGATCAGGATTGAATCGCAAATCAGAGAATAAA
AAGACCA
Found at i:8018421 original size:110 final size:108
Alignment explanation
Indices: 8018132--8018421 Score: 357
Period size: 110 Copynumber: 2.6 Consensus size: 108
8018122 CTGGGATTAA
*
8018132 ACCGCAAGTCAGAGAAATAAGAAATCGATCAGGATAACATCGCGAATCAAAATTATGCCTGGAGG
1 ACCGCAAGTCA-AAAAATAAGAAATCGATCA-GATAACATCGCGAATCAAAATTATGCC-GGAGG
* *
8018197 TCTTAGAAATCATGCCCGAAGGTCTTACAAAATCGATTGGGATAAC
63 TCTTAGAAATCATGCCCGAAGGTCTTACAAAATCGACTGAGATAAC
* * * * * * *
8018243 ACCGTAAGTCAAAAAATAAAAAATCAATCAGAATAACACCGCGAATCAAAATTATACCCGAAGAT
1 ACCGCAAGTCAAAAAATAAGAAATCGATCAG-ATAACATCGCGAATCAAAATTAT-GCCGGAGGT
* *
8018308 CTTAGAAATCATGCCCGGAGGTCTTACAGAATCGACTGAGATAAC
64 CTTAGAAATCATGCCCGAAGGTCTTACAAAATCGACTGAGATAAC
** * *
8018353 ATCC-CAAGTTGAAAGATAAGAAATCGATCGAGATAACATCGTGAATCAAAATTATGTCCGGAGG
1 A-CCGCAAGTCAAAAAATAAGAAATCGATC-AGATAACATCGCGAATCAAAATTATG-CCGGAGG
8018417 TCTTA
63 TCTTA
8018422 CAAAATCAAC
Statistics
Matches: 151, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
109 1 0.01
110 134 0.89
111 16 0.11
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (108 bp):
ACCGCAAGTCAAAAAATAAGAAATCGATCAGATAACATCGCGAATCAAAATTATGCCGGAGGTCT
TAGAAATCATGCCCGAAGGTCTTACAAAATCGACTGAGATAAC
Found at i:8018495 original size:87 final size:88
Alignment explanation
Indices: 8018313--8018495 Score: 212
Period size: 88 Copynumber: 2.1 Consensus size: 88
8018303 AAGATCTTAG
* * * * ** *
8018313 AAATCATGCCCGGAGGTCTTACAGAATCGACTGAGATAACATCCCAAGTTGAAAGATAAGAAATC
1 AAATTATGTCCGGAGGTCTTACAAAATCAACTGAGATAACATCCCAAGTAAAAAAATAAGAAATC
*
8018378 GATCGAGATAACATCGTGAATCA
66 GATCGAGATAACATCGCGAATCA
*
8018401 AAATTATGTCCGGAGGTCTTACAAAATCAACTG-GATAACA-CCGTAAGTCAAAAAAATTAAG-A
1 AAATTATGTCCGGAGGTCTTACAAAATCAACTGAGATAACATCC-CAAGT-AAAAAAA-TAAGAA
*
8018463 ATCGATCG-GATAACATCGCGAATCG
63 ATCGATCGAGATAACATCGCGAATCA
*
8018488 AATTTATG
1 AAATTATG
8018496 CTCAGAGGTT
Statistics
Matches: 81, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
86 2 0.02
87 33 0.41
88 42 0.52
89 4 0.05
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.22
Consensus pattern (88 bp):
AAATTATGTCCGGAGGTCTTACAAAATCAACTGAGATAACATCCCAAGTAAAAAAATAAGAAATC
GATCGAGATAACATCGCGAATCA
Found at i:8018616 original size:132 final size:130
Alignment explanation
Indices: 8018406--8018760 Score: 476
Period size: 132 Copynumber: 2.7 Consensus size: 130
8018396 AATCAAAATT
* * *
8018406 ATGTCCGGAGGTCTTACAAAATCAACTGGATAACACCGTAAGTCAAAAAAATTAAGAATCGATCG
1 ATGTCCGGAAGTCTTACAGAATCAACTGGATAACACCGTAAGT-AAAAAAATAAAGAATCGATCG
* * *
8018471 GATAACATCGCGAATCGAATTTATGCTCAGAGGTTTTAGAAATCATGCCCGAAGGTCTTAGGAAT
65 GATAACATCGCGAATCGAATTTATGCTCAGAGGTCTTAAAAATCATGCCCAAAGGTCTTAGGAAT
8018536 C
130 C
* * * *
8018537 ATGTTCGGACGTCTTACAGAATCAACTAGGATAACACTGTAAGTTAAAAAATAAAGAATCGATCG
1 ATGTCCGGAAGTCTTACAGAATCAACT-GGATAACACCGTAAGTAAAAAAATAAAGAATCGATCG
*
8018602 AGATAACATCGCGAATCGAATTTATGCTCGGAGGTCTTAAAAATCATGCCCAAAGGTCTTAGGAA
65 -GATAACATCGCGAATCGAATTTATGCTCAGAGGTCTTAAAAATCATGCCCAAAGGTCTTAGGAA
8018667 TC
129 TC
* * * * * * *
8018669 ATGCCCGAAAGTCTTATAGAATCGACTGGGATAACACCATAAGTCAAAAAATAAAAAATCGATCG
1 ATGTCCGGAAGTCTTACAGAATCAACT-GGATAACACCGTAAGTAAAAAAATAAAGAATCGATC-
* * *
8018734 GGATAACACCGTGAATCAAATTTATGC
64 GGATAACATCGCGAATCGAATTTATGC
8018761 CCGAAGGTCT
Statistics
Matches: 197, Mismatches: 24, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
131 43 0.22
132 153 0.78
133 1 0.01
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.24
Consensus pattern (130 bp):
ATGTCCGGAAGTCTTACAGAATCAACTGGATAACACCGTAAGTAAAAAAATAAAGAATCGATCGG
ATAACATCGCGAATCGAATTTATGCTCAGAGGTCTTAAAAATCATGCCCAAAGGTCTTAGGAATC
Found at i:8018690 original size:23 final size:22
Alignment explanation
Indices: 8018633--8018691 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 22
8018623 TTATGCTCGG
*
8018633 AGGTCTTAAAAATCATGCCCAA
1 AGGTCTTAAGAATCATGCCCAA
*
8018655 AGGTCTTAGGAATCATGCCCGAA
1 AGGTCTTAAGAATCATGCCC-AA
8018678 A-GTCTTATAGAATC
1 AGGTCTTA-AGAATC
8018692 GACTGGGATA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
22 24 0.75
23 8 0.25
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (22 bp):
AGGTCTTAAGAATCATGCCCAA
Found at i:8018791 original size:88 final size:88
Alignment explanation
Indices: 8018669--8018867 Score: 254
Period size: 88 Copynumber: 2.3 Consensus size: 88
8018659 CTTAGGAATC
* * * *
8018669 ATGCCCGAAAGTCTTATAGAATCGACTGGGATAACACCATAAGTCAAAAAATAAAAAATCGATCG
1 ATGCCCGAAGGTCTTACAGAATCGACTGGAATAACACCACAAGTCAAAAAATAAAAAATCGATCG
** * * *
8018734 GGATAACACCGTGAATCAAATTT
66 AAAAAACACCGCGAATCAAAATT
* * * * *
8018757 ATGCCCGAAGGTCTTACAGAATTGATTGGAATAACACCGCAAGTCAAGAAATAAAGAATCGATCG
1 ATGCCCGAAGGTCTTACAGAATCGACTGGAATAACACCACAAGTCAAAAAATAAAAAATCGATCG
*
8018822 AAAAAATACCGCGAATCAAAATT
66 AAAAAACACCGCGAATCAAAATT
*
8018845 ATGCCCGGAGGTCTTACAGAATC
1 ATGCCCGAAGGTCTTACAGAATC
8018868 TCAAAATCTT
Statistics
Matches: 94, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
88 94 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.21
Consensus pattern (88 bp):
ATGCCCGAAGGTCTTACAGAATCGACTGGAATAACACCACAAGTCAAAAAATAAAAAATCGATCG
AAAAAACACCGCGAATCAAAATT
Found at i:8025504 original size:16 final size:16
Alignment explanation
Indices: 8025452--8025541 Score: 67
Period size: 16 Copynumber: 5.6 Consensus size: 16
8025442 TTGGGGTTTT
* * *
8025452 GATTTAAGGAGTTTCG
1 GATTTTAGGGGTTTGG
* *
8025468 GATTTTAGAGTTTTGG
1 GATTTTAGGGGTTTGG
8025484 G-TTTTAGGGGTTTGG
1 GATTTTAGGGGTTTGG
8025499 GATTTTATGGGGTTT-G
1 GATTTTA-GGGGTTTGG
* * * *
8025515 AATTTAAGGGATTTTG
1 GATTTTAGGGGTTTGG
8025531 GATTTTTAGGG
1 GA-TTTTAGGG
8025542 ATTTCAGATT
Statistics
Matches: 58, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
15 19 0.33
16 25 0.43
17 14 0.24
ACGTcount: A:0.19, C:0.01, G:0.34, T:0.46
Consensus pattern (16 bp):
GATTTTAGGGGTTTGG
Found at i:8025512 original size:17 final size:15
Alignment explanation
Indices: 8025479--8025514 Score: 54
Period size: 17 Copynumber: 2.3 Consensus size: 15
8025469 ATTTTAGAGT
8025479 TTTGGGTTTTAGGGG
1 TTTGGGTTTTAGGGG
8025494 TTTGGGATTTTATGGGG
1 TTTGGG-TTTTA-GGGG
8025511 TTTG
1 TTTG
8025515 AATTTAAGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.32
16 5 0.26
17 8 0.42
ACGTcount: A:0.08, C:0.00, G:0.42, T:0.50
Consensus pattern (15 bp):
TTTGGGTTTTAGGGG
Found at i:8025553 original size:16 final size:16
Alignment explanation
Indices: 8025485--8025554 Score: 54
Period size: 16 Copynumber: 4.3 Consensus size: 16
8025475 GAGTTTTGGG
* *
8025485 TTTTAGGGGTTTGGGA
1 TTTTAGGGATTTGAGA
*
8025501 TTTTATGGGGTTTGA-A
1 TTTTA-GGGATTTGAGA
*
8025517 TTTAAGGGATTTTG-GA
1 TTTTAGGGA-TTTGAGA
*
8025533 TTTTTAGGGATTTCAGA
1 -TTTTAGGGATTTGAGA
8025550 TTTTA
1 TTTTA
8025555 AAAGATTTTG
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
15 3 0.07
16 23 0.52
17 18 0.41
ACGTcount: A:0.20, C:0.01, G:0.30, T:0.49
Consensus pattern (16 bp):
TTTTAGGGATTTGAGA
Found at i:8027354 original size:30 final size:29
Alignment explanation
Indices: 8027275--8027354 Score: 72
Period size: 30 Copynumber: 2.7 Consensus size: 29
8027265 AATTTTTAAA
* * *
8027275 ATTTTAAATTTATATTATAATTTACTTTTT
1 ATTTTAAATTTAAATT-TAATCTACTTTTC
**
8027305 ATTTTAAATGAATAATTTAATCTA-TTTAATC
1 ATTTTAAATTTA-AATTTAATCTACTTT--TC
8027336 ATTTTAAATTTAAATTTAA
1 ATTTTAAATTTAAATTTAA
8027355 ATTTATCAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
29 3 0.08
30 23 0.57
31 14 0.35
ACGTcount: A:0.40, C:0.04, G:0.01, T:0.55
Consensus pattern (29 bp):
ATTTTAAATTTAAATTTAATCTACTTTTC
Found at i:8027782 original size:128 final size:124
Alignment explanation
Indices: 8027607--8027857 Score: 269
Period size: 124 Copynumber: 2.0 Consensus size: 124
8027597 AAAATATCTT
* * *
8027607 ATATATCATTCTCAAAAGAAATTTAAAAAATTTTTTACGTGTCCAAAAGAAAAAATGTCCACATA
1 ATATATAATTCTCAAAAGAAATTTAAAAAATTTTTTACATGTCC---A-AAAAAAT-TACACATA
* * * **
8027672 -AAATATCTATGTTAATAAATCTTATAT-AGTAATTATATATTTTATAATATAATATTATATATG
61 TAAACATCCATATTAATAAATCTTATATGA-TAATTATATATCCTATAATATAATATTATATATG
* * *
8027735 ATATATAATTCTCAAGAA-AAATTTTATAAATTTTTCT-CTATGT-CAAAAAAATTATACATATA
1 ATATATAATTCTCAA-AAGAAATTTAAAAAATTTTT-TAC-ATGTCCAAAAAAATTACACATATA
* *
8027797 AACATCCATATTAATAAATTTTATATGATAATTATGTATCCTATAATATAATATTATATAT
63 AACATCCATATTAATAAATCTTATATGATAATTATATATCCTATAATATAATATTATATAT
8027858 AATTAATTTA
Statistics
Matches: 105, Mismatches: 13, Indels: 14
0.80 0.10 0.11
Matches are distributed among these distances:
123 6 0.06
124 60 0.57
125 2 0.02
128 31 0.30
129 6 0.06
ACGTcount: A:0.46, C:0.09, G:0.05, T:0.41
Consensus pattern (124 bp):
ATATATAATTCTCAAAAGAAATTTAAAAAATTTTTTACATGTCCAAAAAAATTACACATATAAAC
ATCCATATTAATAAATCTTATATGATAATTATATATCCTATAATATAATATTATATATG
Found at i:8027958 original size:24 final size:24
Alignment explanation
Indices: 8027906--8027963 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
8027896 AACAAATTAC
* * *
8027906 ATAAATATATTAATATAATTTATTG
1 ATAAA-ATATGAATATAATTTACTA
8027931 ATAAAATATGAATATAATTTACTA
1 ATAAAATATGAATATAATTTACTA
8027955 AT-AAATATG
1 ATAAAATATG
8027964 TTAAATTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
23 7 0.23
24 18 0.60
25 5 0.17
ACGTcount: A:0.52, C:0.02, G:0.05, T:0.41
Consensus pattern (24 bp):
ATAAAATATGAATATAATTTACTA
Found at i:8032596 original size:17 final size:17
Alignment explanation
Indices: 8032574--8032608 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
8032564 AATGTAACAA
* *
8032574 AGACTATACTGTGCCCT
1 AGACTACACTATGCCCT
8032591 AGACTACACTATGCCCT
1 AGACTACACTATGCCCT
8032608 A
1 A
8032609 TGTTTTTGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.26
Consensus pattern (17 bp):
AGACTACACTATGCCCT
Found at i:8034490 original size:25 final size:25
Alignment explanation
Indices: 8034462--8034509 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
8034452 AAAAATAGAG
8034462 AAAAAGGAAAAAAATGAAAAAAAAT
1 AAAAAGGAAAAAAATGAAAAAAAAT
* **
8034487 AAAAGGGAAAAATGTGAAAAAAA
1 AAAAAGGAAAAAAATGAAAAAAA
8034510 TAGTTAATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.08
Consensus pattern (25 bp):
AAAAAGGAAAAAAATGAAAAAAAAT
Found at i:8034895 original size:21 final size:20
Alignment explanation
Indices: 8034860--8034907 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
8034850 AAATATGCTC
8034860 ATTT-AAAAAATTA--AAAT
1 ATTTAAAAAAATTATTAAAT
8034877 ATTTAAAAAAATTATTAAAT
1 ATTTAAAAAAATTATTAAAT
8034897 ATTTAAAAAAA
1 ATTTAAAAAAA
8034908 GATAAAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.14
18 9 0.32
20 15 0.54
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
ATTTAAAAAAATTATTAAAT
Found at i:8034913 original size:18 final size:18
Alignment explanation
Indices: 8034860--8034913 Score: 65
Period size: 20 Copynumber: 2.9 Consensus size: 18
8034850 AAATATGCTC
*
8034860 ATTTAAAAAATTA-AAAT
1 ATTTAAAAAAATATAAAT
8034877 ATTTAAAAAAATTATTAAAT
1 ATTTAAAAAAA-TA-TAAAT
*
8034897 ATTTAAAAAAAGATAAA
1 ATTTAAAAAAATATAAA
8034914 ATAAATAACA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 10 0.31
18 6 0.19
19 1 0.03
20 15 0.47
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (18 bp):
ATTTAAAAAAATATAAAT
Found at i:8035951 original size:27 final size:28
Alignment explanation
Indices: 8035921--8035979 Score: 79
Period size: 27 Copynumber: 2.1 Consensus size: 28
8035911 ATTCGATAAT
8035921 TTTAAATT-T-ATTAAAATATCAAAATT-A
1 TTTAAATTATAATTAAAA-ATC-AAATTAA
8035948 TTTAAATTATAATTAAAAATCAAATTAA
1 TTTAAATTATAATTAAAAATCAAATTAA
8035976 TTTA
1 TTTA
8035980 GGGATATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
27 13 0.45
28 9 0.31
29 7 0.24
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (28 bp):
TTTAAATTATAATTAAAAATCAAATTAA
Found at i:8036964 original size:263 final size:265
Alignment explanation
Indices: 8036435--8036958 Score: 805
Period size: 263 Copynumber: 2.0 Consensus size: 265
8036425 ATTTAAGACT
*
8036435 ACAAATTTAATGTGTTATACATCAAATTTTTTTAAAATTTTTTCAATAACTTTTTTAAGGTATAT
1 ACAAATGTAATGTGTTATACATCAAATTTTTTT--AATTTTTTCAATAACTTTTTTAAGGTATAT
8036500 TCTATTACTATTGCAATTTTTTTTGTTTATAAATTTTTTCTAAGATATATTTTATTGTTATTACA
64 TCTATTACTATTGCAATTTTTTTTGTTTATAAATTTTTTCTAAGATATATTTTATTGTTATTACA
* * *
8036565 GTTTTATTTTTATGAAAAATAATTTTTTTCAATTGATTTTTTCTTTTTTCACATATTTTTTAACA
129 ATTTCATTCTTATGAAAAATAATTTTTTTCAATTGATTTTTTC-TTTTTCACATATTTTTTAACA
* * *
8036630 TTTTTCATATTTTGTATAATAATTTAGTTAAGATTACTAAAGTGAAAGTTTGCTAATATTTCTTT
193 TTTTTCATATTTTGTATAATAATTTAGTCAAGATTACTAAAGTGAAAGTGTACTAATATTTCTTT
8036695 TATTTAAG
258 TATTTAAG
*
8036703 ACAAATGTAATGTGTTATACAT-TAA-TTTTTT-A-TTTTT-AATAACTTTTTTTAAGGTATATT
1 ACAAATGTAATGTGTTATACATCAAATTTTTTTAATTTTTTCAATAAC-TTTTTTAAGGTATATT
*
8036763 CTATTACTATTG-AATTTTTTTTTTGTTTATAAATTTTTTCTAAGATATATTTTATTGTTATTAT
65 CTATTACTATTGCAA--TTTTTTTTGTTTATAAATTTTTTCTAAGATATATTTTATTGTTATTAC
*
8036827 AATTTCATTCTTATGAAAAATAATTTTTTTCAATTTATTTTTTC-TTTT-ACATATTTTTCT-AC
128 AATTTCATTCTTATGAAAAATAATTTTTTTCAATTGATTTTTTCTTTTTCACATATTTTT-TAAC
* * *
8036889 ATTTTTTATATTTTGTATAATAATTTAGTCAAGATTACTAAAGTGAAAGTGTATTAATACTTCTT
192 ATTTTTCATATTTTGTATAATAATTTAGTCAAGATTACTAAAGTGAAAGTGTACTAATATTTCTT
8036954 TTATT
257 TTATT
8036959 ATTTAATTTA
Statistics
Matches: 239, Mismatches: 13, Indels: 16
0.89 0.05 0.06
Matches are distributed among these distances:
260 76 0.32
261 13 0.05
262 33 0.14
263 88 0.37
266 6 0.03
267 2 0.01
268 21 0.09
ACGTcount: A:0.31, C:0.07, G:0.07, T:0.55
Consensus pattern (265 bp):
ACAAATGTAATGTGTTATACATCAAATTTTTTTAATTTTTTCAATAACTTTTTTAAGGTATATTC
TATTACTATTGCAATTTTTTTTGTTTATAAATTTTTTCTAAGATATATTTTATTGTTATTACAAT
TTCATTCTTATGAAAAATAATTTTTTTCAATTGATTTTTTCTTTTTCACATATTTTTTAACATTT
TTCATATTTTGTATAATAATTTAGTCAAGATTACTAAAGTGAAAGTGTACTAATATTTCTTTTAT
TTAAG
Found at i:8039008 original size:25 final size:25
Alignment explanation
Indices: 8038978--8039045 Score: 93
Period size: 26 Copynumber: 2.6 Consensus size: 25
8038968 TATTAATATA
8038978 ATTATTAAAATATTAAAAAATATTT
1 ATTATTAAAATATTAAAAAATATTT
*
8039003 ATTATTAAAGTATATT-AAAATTATTT
1 ATTATTAAA--ATATTAAAAAATATTT
8039029 ATTATTAAAATTATTAA
1 ATTATTAAAA-TATTAA
8039046 TATTCAAGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
24 1 0.03
25 13 0.34
26 19 0.50
27 5 0.13
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (25 bp):
ATTATTAAAATATTAAAAAATATTT
Found at i:8039320 original size:47 final size:49
Alignment explanation
Indices: 8039263--8039361 Score: 175
Period size: 50 Copynumber: 2.0 Consensus size: 49
8039253 TCCATGATTA
8039263 AATCATAACAGAAAA-TTTT-TTTATATTTATTATTAAAATAGTAATAT
1 AATCATAACAGAAAATTTTTATTTATATTTATTATTAAAATAGTAATAT
8039310 AATCATAACAGAAAATTTTTTATTTATATTTATTATTAAAATAGTAATAT
1 AATCATAACAGAAAA-TTTTTATTTATATTTATTATTAAAATAGTAATAT
8039360 AA
1 AA
8039362 ATACAATAAT
Statistics
Matches: 49, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
47 15 0.31
49 4 0.08
50 30 0.61
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.44
Consensus pattern (49 bp):
AATCATAACAGAAAATTTTTATTTATATTTATTATTAAAATAGTAATAT
Found at i:8039394 original size:56 final size:50
Alignment explanation
Indices: 8039282--8039396 Score: 131
Period size: 50 Copynumber: 2.2 Consensus size: 50
8039272 AGAAAATTTT
* ***
8039282 TTTATATTTATTATTAAAATAGTAATATAATCATAACAGAAAATTTTTTA
1 TTTATATTTATTATTAAAATAGTAATATAATCATAACAGAAAATATAAAA
*
8039332 TTTATATTTATTATTAAAATAGTAATATAAATACAATAATAGATAAAATATAAAA
1 TTTATATTTATTATTAAAATAGTAATAT-AAT-C-ATAACAG--AAAATATAAAA
8039387 TTATATATTT
1 TT-TATATTT
8039397 TAAACTAAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
50 28 0.52
51 3 0.06
52 1 0.02
53 6 0.11
55 9 0.17
56 7 0.13
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (50 bp):
TTTATATTTATTATTAAAATAGTAATATAATCATAACAGAAAATATAAAA
Found at i:8039597 original size:24 final size:25
Alignment explanation
Indices: 8039570--8039623 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 25
8039560 AATATTTATG
8039570 TTTAATAATATCAAA-A-TAAAAATA
1 TTTAATAAT-TCAAATATTAAAAATA
* *
8039594 TTTAA-AATTGAAATATTAAAAATT
1 TTTAATAATTCAAATATTAAAAATA
8039618 TTTAAT
1 TTTAAT
8039624 GCTAATATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
22 4 0.16
23 4 0.16
24 17 0.68
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (25 bp):
TTTAATAATTCAAATATTAAAAATA
Found at i:8048969 original size:13 final size:14
Alignment explanation
Indices: 8048940--8048973 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
8048930 GTATATCAGT
*
8048940 TATAATTAGTATAA
1 TATAATTAATATAA
8048954 TATAATTAAT-TAA
1 TATAATTAATATAA
8048967 TATAATT
1 TATAATT
8048974 TAGTATTGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (14 bp):
TATAATTAATATAA
Found at i:8049102 original size:20 final size:20
Alignment explanation
Indices: 8049077--8049118 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
8049067 CTTTATAAAA
8049077 TAATTTGCTAAGAAATTAGT
1 TAATTTGCTAAGAAATTAGT
*
8049097 TAATTTGCTGAGAAATTAGT
1 TAATTTGCTAAGAAATTAGT
8049117 TA
1 TA
8049119 TATTCACTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.17, T:0.40
Consensus pattern (20 bp):
TAATTTGCTAAGAAATTAGT
Found at i:8049535 original size:22 final size:22
Alignment explanation
Indices: 8049507--8049556 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
8049497 GTTGCACGGA
8049507 TATATGCTTACTTTCAATGGTT
1 TATATGCTTACTTTCAATGGTT
*
8049529 TATATGCTTACTTTTAATGGTT
1 TATATGCTTACTTTCAATGGTT
8049551 TATATG
1 TATATG
8049557 TACGGATTCG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.24, C:0.10, G:0.14, T:0.52
Consensus pattern (22 bp):
TATATGCTTACTTTCAATGGTT
Found at i:8049658 original size:18 final size:20
Alignment explanation
Indices: 8049615--8049658 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 20
8049605 TAAATTAAAA
*
8049615 AATAAATTTTAAATTTATTT
1 AATAAATTTTAAATTTATAT
*
8049635 ATTAAA-TTT-AATTTATAT
1 AATAAATTTTAAATTTATAT
8049653 AATAAA
1 AATAAA
8049659 AATAAATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 13 0.62
19 3 0.14
20 5 0.24
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
AATAAATTTTAAATTTATAT
Found at i:8049743 original size:13 final size:14
Alignment explanation
Indices: 8049717--8049745 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
8049707 TATATTTACA
8049717 TAATTATAATATTT
1 TAATTATAATATTT
8049731 TAATTAT-ATATTT
1 TAATTATAATATTT
8049744 TA
1 TA
8049746 TTTAATTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TAATTATAATATTT
Found at i:8060482 original size:18 final size:18
Alignment explanation
Indices: 8060459--8060493 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8060449 TCAAATTAAC
*
8060459 AAAAATTTTTAGCTTCAT
1 AAAAATTTTTAGATTCAT
8060477 AAAAATTTTTAGATTCA
1 AAAAATTTTTAGATTCA
8060494 CTTGAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.09, G:0.06, T:0.43
Consensus pattern (18 bp):
AAAAATTTTTAGATTCAT
Found at i:8060764 original size:17 final size:17
Alignment explanation
Indices: 8060734--8060782 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 17
8060724 AAAATTTCAT
* *
8060734 ATTCACAAGATTTCAAA
1 ATTCATAAGGTTTCAAA
* *
8060751 ATTCATAATGTTTCCAA
1 ATTCATAAGGTTTCAAA
8060768 ATTCATAAGGTTTCA
1 ATTCATAAGGTTTCA
8060783 GGCTTGCAAG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (17 bp):
ATTCATAAGGTTTCAAA
Found at i:8060998 original size:23 final size:23
Alignment explanation
Indices: 8060972--8061075 Score: 81
Period size: 23 Copynumber: 4.7 Consensus size: 23
8060962 GATTTCAAAT
8060972 ATTCACATTAAAAAATTTTAGAG
1 ATTCACATTAAAAAATTTTAGAG
* *
8060995 ATTCACATTTAAAATTTTTAG-G
1 ATTCACATTAAAAAATTTTAGAG
* ** * * *
8061017 -CTCACA-TCCAAAA-TTCAAAT
1 ATTCACATTAAAAAATTTTAGAG
*
8061037 ATTCACATTAAAAAATCTTAGAG
1 ATTCACATTAAAAAATTTTAGAG
*
8061060 ATTCACACCTAAAAAA
1 ATTCACA-TTAAAAAA
8061076 GATTTTCATT
Statistics
Matches: 59, Mismatches: 17, Indels: 9
0.69 0.20 0.11
Matches are distributed among these distances:
19 3 0.05
20 4 0.07
21 10 0.17
22 6 0.10
23 29 0.49
24 7 0.12
ACGTcount: A:0.46, C:0.16, G:0.06, T:0.32
Consensus pattern (23 bp):
ATTCACATTAAAAAATTTTAGAG
Found at i:8061136 original size:22 final size:22
Alignment explanation
Indices: 8061111--8061160 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
8061101 CTTCATTTCC
8061111 AAAATTTCAAAGATTCACATTT-
1 AAAATTT-AAAGATTCACATTTG
* *
8061133 AAAACTTAAAGATTCTCATTTG
1 AAAATTTAAAGATTCACATTTG
8061155 AAAATT
1 AAAATT
8061161 CTTAGAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 13 0.54
22 11 0.46
ACGTcount: A:0.46, C:0.12, G:0.06, T:0.36
Consensus pattern (22 bp):
AAAATTTAAAGATTCACATTTG
Found at i:8065979 original size:64 final size:65
Alignment explanation
Indices: 8065868--8065997 Score: 147
Period size: 63 Copynumber: 2.0 Consensus size: 65
8065858 TATAAATCCA
* * * * *
8065868 AAAATTTATAATTAGACACAACTTAAGAAGTCGTCATCAAT-CTTTTTTCTGTTTAGGTGCGATT
1 AAAATTTATAACTAGACACAACTTAAGAAGTCATCACCAATATTTTTTTCTATTTAGGTGCGATT
* * * * *
8065932 AAAATTTATCACTAG-CATAACTTAGGAAGTCATCACCAATATATTTTTTTTATTTAGGTGTGAT
1 AAAATTTATAACTAGACACAACTTAAGAAGTCATCACCAATAT-TTTTTTCTATTTAGGTGCGAT
8065996 T
65 T
8065997 A
1 A
8065998 GCCATACTCT
Statistics
Matches: 54, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
63 21 0.39
64 13 0.24
65 20 0.37
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.40
Consensus pattern (65 bp):
AAAATTTATAACTAGACACAACTTAAGAAGTCATCACCAATATTTTTTTCTATTTAGGTGCGATT
Found at i:8066655 original size:16 final size:15
Alignment explanation
Indices: 8066617--8066660 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 15
8066607 AAAATATCTT
*
8066617 TAATCAAAACATGTAAA
1 TAAT-AAAAAATG-AAA
8066634 TAATAAAAAATGAAA
1 TAATAAAAAATGAAA
8066649 TATATAAAAAAT
1 TA-ATAAAAAAT
8066661 ATATATAAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 5 0.20
16 16 0.64
17 4 0.16
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.25
Consensus pattern (15 bp):
TAATAAAAAATGAAA
Found at i:8066667 original size:15 final size:16
Alignment explanation
Indices: 8066631--8066660 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8066621 CAAAACATGT
8066631 AAATA-ATAAAAAATG
1 AAATATATAAAAAATG
8066646 AAATATATAAAAAAT
1 AAATATATAAAAAAT
8066661 ATATATAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.23
Consensus pattern (16 bp):
AAATATATAAAAAATG
Found at i:8071294 original size:95 final size:95
Alignment explanation
Indices: 8071133--8071309 Score: 239
Period size: 95 Copynumber: 1.9 Consensus size: 95
8071123 AACACAACAA
* * * *
8071133 AAAACTACAAAGACTACCTTTTTTATGTGAGAAACTTAGTATTTGAGCGCCAAAATCTCACCAAA
1 AAAACTACAAAGACTACATTTTTTATGTAAGAAACTTAGTATTTGAGCACCAAAATCTCACAAAA
8071198 TCGTCTCCTCTTACTTTTTCAAGACAACGT
66 TCGTCTCCTCTTACTTTTTCAAGACAACGT
* * * *
8071228 AAAACTACAAAGACTACATTTTTTATGTAAGAAAGTTAGTTTTTGTA-CACTAAAATCTTACAAA
1 AAAACTACAAAGACTACATTTTTTATGTAAGAAACTTAGTATTTG-AGCACCAAAATCTCACAAA
* * *
8071292 ATCTTTTCCTTTTACTTT
65 ATCGTCTCCTCTTACTTT
8071310 CCCAAGAACT
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
95 69 0.99
96 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.36
Consensus pattern (95 bp):
AAAACTACAAAGACTACATTTTTTATGTAAGAAACTTAGTATTTGAGCACCAAAATCTCACAAAA
TCGTCTCCTCTTACTTTTTCAAGACAACGT
Found at i:8071338 original size:105 final size:104
Alignment explanation
Indices: 8071229--8071429 Score: 267
Period size: 105 Copynumber: 1.9 Consensus size: 104
8071219 AGACAACGTA
* * ** * * *
8071229 AAACTACAAAGACTACATTTTTTATGTAAGAAAGTTAGTTTTTGTACACTAAAATCTTACAAAAT
1 AAACTACAAAGAATACATTTCTTATGTAAGAAACATAATTTTTGTACACCAAAATCTCACAAAAT
* *
8071294 CTTTTCCTTTTACTTTCCCAAGAACTTTTTTTTACAACAC
66 ATTCTCCTTTTACTTTCCCAAGAA-TTTTTTTTACAACAC
* * *
8071334 AAACTACAAAGAATATATTTCTTATGTAAGAAACATAATTTTTGTGCACCAAAATCTCACCAAAT
1 AAACTACAAAGAATACATTTCTTATGTAAGAAACATAATTTTTGTACACCAAAATCTCACAAAAT
* *
8071399 ATTCTCTTTTTACTTTTCCAAGAATTTTTTT
66 ATTCTCCTTTTACTTTCCCAAGAATTTTTTT
8071430 AGAACAAAAA
Statistics
Matches: 82, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
104 7 0.09
105 75 0.91
ACGTcount: A:0.36, C:0.17, G:0.06, T:0.40
Consensus pattern (104 bp):
AAACTACAAAGAATACATTTCTTATGTAAGAAACATAATTTTTGTACACCAAAATCTCACAAAAT
ATTCTCCTTTTACTTTCCCAAGAATTTTTTTTACAACAC
Found at i:8072597 original size:32 final size:32
Alignment explanation
Indices: 8072530--8072651 Score: 104
Period size: 32 Copynumber: 3.8 Consensus size: 32
8072520 CCTTGTCCGA
* *
8072530 TGGTGGCTATTCAATTAGGTTTTCTTATCT--GG
1 TGGTGGCTATTCAATT-GGGTTTCTT-TCTCCAG
8072562 TGGTGGCTATTCAATTGGGTTTCTTTCTCCAG
1 TGGTGGCTATTCAATTGGGTTTCTTTCTCCAG
* *** * * *
8072594 TGGTGGCTTTTTGGTTGGGTTTCCTTATCCAC
1 TGGTGGCTATTCAATTGGGTTTCTTTCTCCAG
* * *
8072626 TGGTAGCTCTTCGATTGGGTTTCTTT
1 TGGTGGCTATTCAATTGGGTTTCTTT
8072652 TTTTGTTCAA
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
30 3 0.04
31 8 0.11
32 63 0.85
ACGTcount: A:0.11, C:0.16, G:0.26, T:0.47
Consensus pattern (32 bp):
TGGTGGCTATTCAATTGGGTTTCTTTCTCCAG
Found at i:8077666 original size:13 final size:13
Alignment explanation
Indices: 8077648--8077677 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8077638 TAATGTCTAT
8077648 ATATGTTCTTTAC
1 ATATGTTCTTTAC
*
8077661 ATATGTTCTTTAT
1 ATATGTTCTTTAC
8077674 ATAT
1 ATAT
8077678 ATTTGGTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.27, C:0.10, G:0.07, T:0.57
Consensus pattern (13 bp):
ATATGTTCTTTAC
Found at i:8079685 original size:159 final size:160
Alignment explanation
Indices: 8078825--8080693 Score: 1493
Period size: 160 Copynumber: 11.7 Consensus size: 160
8078815 AATAATGTTG
* * * * ** *
8078825 TCGTTTATATTTGTTTAGCACTTTTTGTGCCATTAAAAGGTAAAAAATGTAAAAATG-TTGTTAT
1 TCGTTTATCTCTGTTTAGCATTTTTTGTGCCATTAAAAGGT-AAAAATGCAAATTTGCAT-TTAT
* * * * * * * * *
8078889 TTTTTTGTTTTAACAATTTGGATAGCTTCAATACATTATATTAAACTTACCCAAATGATTGAATT
64 TATTATATTTTAACAGTTTAGATAGCTTCAATACATGATATTAAACTTATCCGAATGATTGAACT
* * *
8078954 TGGTTTTCACA-GATAATATATGTG-AAAAGTTA
129 TGG-TTTC-CATGTTGATATGTGTGAAAAAGTTA
* * * * * * * ** * * *
8078986 CCGTTTAT-TACTTTTTAGGACTTTGTTGTGCCATTAAAGGGCAAAATTTTAATTTTGTAGTTAT
1 TCGTTTATCT-CTGTTTAGCA-TTTTTTGTGCCATTAAAAGGTAAAAATGCAAATTTGCATTTAT
* * * * *
8079050 T-TTATGTTTTAAAAGTTTAGATAG-TTAAATACATTATATTAAACGTATCCGAATGATTGAACT
64 TATTATATTTTAACAGTTTAGATAGCTTCAATACATGATATTAAACTTATCCGAATGATTGAACT
** * * *
8079113 TTATTT-CTTCGATTGATACGTGTAAAAAAAGTTA
129 TGGTTTCCAT-G-TTGATATGTGT-GAAAAAGTTA
** * *
8079147 TTTTTTATGTCTGTTTAGCATTTTTTGTGACATTAAAAGGTAAAAATGCAAATTTGCATTTATTA
1 TCGTTTATCTCTGTTTAGCATTTTTTGTGCCATTAAAAGGTAAAAATGCAAATTTGCATTTATTA
* * * *
8079212 TTATATTTTAACTGTTCAAATAGCTTCAATACATGATATTAAACTTATCTGAATGATTGAA-TGT
66 TTATATTTTAACAGTTTAGATAGCTTCAATACATGATATTAAACTTATCCGAATGATTGAACT-T
* * *
8079276 GGTTTTCATATTGATATGTGTGAAAAATTTA
130 GGTTTCCATGTTGATATGTGTGAAAAAGTTA
** *
8079307 -CGTTTATCTCTGTTTAGCA-TTTTTGTGAAATTAAAAGGTAAAAACGCAAATTTGCATTTATTA
1 TCGTTTATCTCTGTTTAGCATTTTTTGTGCCATTAAAAGGTAAAAATGCAAATTTGCATTTATTA
* * * * * *** *
8079370 TAATA-TTTAATAGTTTAGATAACTTCAATATATGATATTAAACTTGTTTAAATGATTGATCTTG
66 TTATATTTTAACAGTTTAGATAGCTTCAATACATGATATTAAACTTATCCGAATGATTGAACTTG
* * *
8079434 GTTTCTACAAT-TTG-TTTTTGAGAAAAAGTTA
131 GTTTC--C-ATGTTGATATGTGTGAAAAAGTTA
* * * ** *
8079465 TCGTTTATCTTTGTTTAGCATTTTTTAT-CTCGTTAAAAGACATAAATGCAAATTTGCATTTATT
1 TCGTTTATCTCTGTTTAGCATTTTTTGTGC-CATTAAAAGGTAAAAATGCAAATTTGCATTTATT
* * * *
8079529 ATTAT-TTTTAACAGTTTAGATAGTTTCAGTGCATGATATTAAACTTATCCGAATTATTGAACTT
65 ATTATATTTTAACAGTTTAGATAGCTTCAATACATGATATTAAACTTATCCGAATGATTGAACTT
*
8079593 GGTTTCCATGTTGATATGTGTGAAAAAATTA
130 GGTTTCCATGTTGATATGTGTGAAAAAGTTA
* ** *
8079624 TCGTTTATCTCTGTTTAGAATTTTTTGTGCCATTAAAAGGTAAAAATATAAATTTACATTTATTA
1 TCGTTTATCTCTGTTTAGCATTTTTTGTGCCATTAAAAGGTAAAAATGCAAATTTGCATTTATTA
* * * *
8079689 TTATATTTTAACAGTTTAGATAGC-TCTAATACATGATATTAAATTTGTTCGAATAATTGAACTT
66 TTATATTTTAACAGTTTAGATAGCTTC-AATACATGATATTAAACTTATCCGAATGATTGAACTT
* *
8079753 GGTTTTCACGGTTGATATGTGTGAAAAAGTT-
130 GGTTTCCA-TGTTGATATGTGTGAAAAAGTTA
* * * * * * * *
8079784 GC-ATTATTTATGTTTAGCATTTTTTATGCCTTTAAAAGGTTAAAATGAAAATTTGCATTTATTA
1 TCGTTTATCTCTGTTTAGCATTTTTTGTGCCATTAAAAGGTAAAAATGCAAATTTGCATTTATTA
* * * * * *
8079848 TTATATTTTAATAGTTTAAATAGCTTCAATACATGATATTAAACTTGTCTGAATAATTGCACTTC
66 TTATATTTTAACAGTTTAGATAGCTTCAATACATGATATTAAACTTATCCGAATGATTGAACTT-
** *
8079913 ATTTTCACA-GTTGATATGTGTAAAAAAGTTA
130 GGTTTC-CATGTTGATATGTGTGAAAAAGTTA
* * * *
8079944 TCGTTTATCTCTGTTTACCATTTTTTGTGCCGTTAGAAA-GCAAAAATGCAAAATTGCATTTATT
1 TCGTTTATCTCTGTTTAGCATTTTTTGTGCCATTA-AAAGGTAAAAATGCAAATTTGCATTTATT
* *
8080008 ATTATATTTTAACAGTTTAGATGGCTTCAATACATGATATTAAACTTATCTGAATGATTGAAC-T
65 ATTATATTTTAACAGTTTAGATAGCTTCAATACATGATATTAAACTTATCCGAATGATTGAACTT
* * * * *
8080072 CGTTTTCACGATTAATATGTATGAAAAAGTTA
130 GGTTTCCATG-TTGATATGTGTGAAAAAGTTA
* * * * * **
8080104 TCGTTTATCTCTGTTTAGCACTTTTTATGTCGTTAAAAGGTAAAATAT--AATTTTATATTTA-T
1 TCGTTTATCTCTGTTTAGCATTTTTTGTGCCATTAAAAGGTAAAA-ATGCAAATTTGCATTTATT
* * * **
8080166 ACTTATGTTTTAACAATTTAGATAGTTTCAATACATGATATTAAACTTATCTAAATGATTGAACT
65 A-TTATATTTTAACAGTTTAGATAGCTTCAATACATGATATTAAACTTATCCGAATGATTGAACT
** * * *
8080231 TCATTTTCACA-ATTGATATGTATGAAAACGTTA
129 T-GGTTTC-CATGTTGATATGTGTGAAAAAGTTA
* * * * * * *
8080264 TCATTTATTTTTGTTTAGCA-CTTTTGTGCCATTAAAAGGCAAAAATGCACATTTGTATTTATTA
1 TCGTTTATCTCTGTTTAGCATTTTTTGTGCCATTAAAAGGTAAAAATGCAAATTTGCATTTATTA
* * * * * * *
8080328 TTTTGTTTGAACAGTTTAGATATCTTTAATACATGATATTAAACTTGTCCGAATAATTGAACTTG
66 TTATATTTTAACAGTTTAGATAGCTTCAATACATGATATTAAACTTATCCGAATGATTGAACTTG
* * * * *
8080393 ATTTTCACA-ATTGATATATATGAAAAAGCTA
131 -GTTTC-CATGTTGATATGTGTGAAAAAGTTA
** * * * * * ** * * * * *
8080424 TTATTTATGTCTTTTTAGGACTTTATTATATCGTT-AAAGGCAAAAATGTAATTTTGCAATTA-T
1 TCGTTTATCTCTGTTTAGCA-TTTTTTGTGCCATTAAAAGGTAAAAATGCAAATTTGCATTTATT
* * * * * * * *
8080487 ATTTATGTTTTAACAATTCAGATAGCTTAAATACA-AATATTAAAGTTGTCCGAATGATTTAACT
65 A-TTATATTTTAACAGTTTAGATAGCTTCAATACATGATATTAAACTTATCCGAATGATTGAACT
* *
8080551 TGGTTTTCACGAT-TTGATATGTATGAATAAGTTA
129 TGG-TTTC-C-ATGTTGATATGTGTGAAAAAGTTA
* *** * * * *
8080585 T-GATTTATGTCTGTTTATG-ATTTTTTGTAATATTAAAAGGTAAACATACAAATTTACAGTTAT
1 TCG-TTTATCTCTGTTTA-GCATTTTTTGTGCCATTAAAAGGTAAAAATGCAAATTTGCATTTAT
* * * *
8080648 TGTTTTATTTTAATAGTTTAGGTAGC-TCATATTACATGATATTAAA
64 TATTATATTTTAACAGTTTAGATAGCTTCA-A-TACATGATATTAAA
8080694 TTTGTCCAAA
Statistics
Matches: 1378, Mismatches: 272, Indels: 114
0.78 0.15 0.06
Matches are distributed among these distances:
156 1 0.00
157 53 0.04
158 74 0.05
159 371 0.27
160 462 0.34
161 334 0.24
162 73 0.05
163 10 0.01
ACGTcount: A:0.34, C:0.10, G:0.13, T:0.44
Consensus pattern (160 bp):
TCGTTTATCTCTGTTTAGCATTTTTTGTGCCATTAAAAGGTAAAAATGCAAATTTGCATTTATTA
TTATATTTTAACAGTTTAGATAGCTTCAATACATGATATTAAACTTATCCGAATGATTGAACTTG
GTTTCCATGTTGATATGTGTGAAAAAGTTA
Found at i:8085093 original size:16 final size:16
Alignment explanation
Indices: 8085052--8085096 Score: 65
Period size: 15 Copynumber: 2.8 Consensus size: 16
8085042 ATCTTCAAAT
8085052 AAAAATCACACTTATAA
1 AAAAATCAC-CTTATAA
*
8085069 AACAA-CACCTTATAA
1 AAAAATCACCTTATAA
8085084 AAAAATCACCTTA
1 AAAAATCACCTTA
8085097 GCAGATCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 11 0.44
16 10 0.40
17 4 0.16
ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22
Consensus pattern (16 bp):
AAAAATCACCTTATAA
Found at i:8088295 original size:19 final size:19
Alignment explanation
Indices: 8088273--8088316 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
8088263 ATATTTAATT
8088273 TAATTTAAAATTAATATAA
1 TAATTTAAAATTAATATAA
* * *
8088292 TAATTTTAATTTAGTATAA
1 TAATTTAAAATTAATATAA
8088311 T-ATTTA
1 TAATTTA
8088317 TAAAAATATT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (19 bp):
TAATTTAAAATTAATATAA
Found at i:8088447 original size:42 final size:40
Alignment explanation
Indices: 8088355--8088447 Score: 93
Period size: 42 Copynumber: 2.3 Consensus size: 40
8088345 TTAACTATAT
*
8088355 ATAAAT-ATAATATTTTATTAAGTTAAAATATCAAATTAA
1 ATAAATAATAATATTTTATTAAGTTAAAAAATCAAATTAA
* *
8088394 ATTATTAAATAATAATTTTATTAA-TATATAAAAAT-AAATTTAA
1 ATAAAT-AATAAT-ATTTTATTAAGT-TA-AAAAATCAAA-TTAA
8088437 ATAAATAATAA
1 ATAAATAATAA
8088448 AAAAATATGT
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
39 4 0.09
41 6 0.14
42 20 0.47
43 13 0.30
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (40 bp):
ATAAATAATAATATTTTATTAAGTTAAAAAATCAAATTAA
Found at i:8096772 original size:34 final size:33
Alignment explanation
Indices: 8096696--8096785 Score: 108
Period size: 34 Copynumber: 2.7 Consensus size: 33
8096686 CTGAGCAAGT
*
8096696 TATCAAAAATTCATATTCGAAAACTTCTTCAATG
1 TATCAAAAATTCATTTTC-AAAACTTCTTCAATG
* *
8096730 TATCAAAAATTCATTTTCAAAATTTTTTCAATG
1 TATCAAAAATTCATTTTCAAAACTTCTTCAATG
* * *
8096763 TATTGAAAAATGCATTTTTAAAA
1 TA-TCAAAAATTCATTTTCAAAA
8096786 AGTATTATAA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
33 15 0.31
34 34 0.69
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.40
Consensus pattern (33 bp):
TATCAAAAATTCATTTTCAAAACTTCTTCAATG
Found at i:8096807 original size:34 final size:34
Alignment explanation
Indices: 8096769--8096875 Score: 137
Period size: 34 Copynumber: 3.1 Consensus size: 34
8096759 AATGTATTGA
*
8096769 AAAATGCATTTTTAAAAAGTATTATAATTATTCG
1 AAAATGCATTTTTAAAAAGCATTATAATTATTCG
* *
8096803 AAAATACATTTTTAGAAAA-CATTATAATTATTTG
1 AAAATGCATTTTTA-AAAAGCATTATAATTATTCG
* *
8096837 AAAATGCATTTTTAGAAAGCATTACAATTA-TCTG
1 AAAATGCATTTTTAAAAAGCATTATAATTATTC-G
8096871 AAAAT
1 AAAAT
8096876 CTATTTCCCA
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
33 4 0.06
34 55 0.87
35 4 0.06
ACGTcount: A:0.46, C:0.07, G:0.08, T:0.38
Consensus pattern (34 bp):
AAAATGCATTTTTAAAAAGCATTATAATTATTCG
Found at i:8097534 original size:68 final size:68
Alignment explanation
Indices: 8097401--8097542 Score: 164
Period size: 68 Copynumber: 2.1 Consensus size: 68
8097391 TTGTGTTTTG
* * * * *
8097401 AAAATTCATTTTTGAAATTTTTTAAAGGTTTCATAAAATAAATATTTGAAAACTATTGAGAAATT
1 AAAATACACTTTTGAAAATTTTTAAAGGTTTCATAAAATAAATATTCGAAAACTATTAAGAAATT
8097466 TCA
66 TCA
* * *
8097469 TAAATACACTTTTGAAAATTTTTAAAGGTTT-TTGAAAATGAATATTCGAAAACCT-TTAA-AGA
1 AAAATACACTTTTGAAAATTTTTAAAGGTTTCAT-AAAATAAATATTCGAAAA-CTATTAAGA-A
8097531 ATTTCA
63 ATTTCA
8097537 AAAATA
1 AAAATA
8097543 AATTTTCAAA
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
67 2 0.03
68 58 0.94
69 2 0.03
ACGTcount: A:0.45, C:0.07, G:0.09, T:0.39
Consensus pattern (68 bp):
AAAATACACTTTTGAAAATTTTTAAAGGTTTCATAAAATAAATATTCGAAAACTATTAAGAAATT
TCA
Found at i:8099903 original size:15 final size:15
Alignment explanation
Indices: 8099883--8099912 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
8099873 CCATCTCAAC
8099883 ACTACCATTCTTGAA
1 ACTACCATTCTTGAA
8099898 ACTACCATTCTTGAA
1 ACTACCATTCTTGAA
8099913 GTGAAGCTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.27, G:0.07, T:0.33
Consensus pattern (15 bp):
ACTACCATTCTTGAA
Found at i:8100422 original size:2 final size:2
Alignment explanation
Indices: 8100415--8100446 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8100405 AAGTTAATTA
8100415 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8100447 CAACTCACAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8100774 original size:2 final size:2
Alignment explanation
Indices: 8100767--8100798 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8100757 AAAATATTTA
8100767 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8100799 TTGCATGTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8103160 original size:161 final size:161
Alignment explanation
Indices: 8102934--8103263 Score: 402
Period size: 161 Copynumber: 2.0 Consensus size: 161
8102924 TTTAAAAGGA
*
8102934 AAAATAGTCCTAAATAGACGTAAACAATAACTTTTTCACACATATAATTAGTAGAAACCAAGTTC
1 AAAA-AGTCCTAAATAGACGTAAACAATAACTTTTTCACACATATAATCAGTAGAAACCAAGTTC
* * * * * *
8102999 AAT-CATTC-ATACAAGTTTAATATTATGTATT-AAAGCTATCCAAATTGTTAAAATAGAACAAT
65 AATACATTCGAT--AAGTTTAACATCATATATTGAAA-CTATCAAAACTATTAAAATAGAACAAT
*
8103061 AA-CAATAATTTTATATTTTTACCTATTAACGGCAT
127 AATCAATAA-TTTATATTTTTACCTATTAACGGCAC
* * *
8103096 AAAAAGTCCTAAATAGACGTAAACAATAACTTTTTCATACATATCAA-CCGT-GAAAACTAAGTT
1 AAAAAGTCCTAAATAGACGTAAACAATAACTTTTTCACACATAT-AATCAGTAG-AAACCAAGTT
*
8103159 CAATACTTTCGATAAGTTTAACATCATATATTGAAACTATCAAAACTATTAAAATAGAACAATAA
64 CAATACATTCGATAAGTTTAACATCATATATTGAAACTATCAAAACTATTAAAATAGAACAATAA
*** * *
8103224 TTGTTAATTTATATTTTTACCTTTTAATGGCAC
129 TCAATAATTTATATTTTTACCTATTAACGGCAC
8103257 AAAAAGT
1 AAAAAGT
8103264 TCATTCATTT
Statistics
Matches: 145, Mismatches: 17, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
160 1 0.01
161 126 0.87
162 16 0.11
163 2 0.01
ACGTcount: A:0.44, C:0.14, G:0.08, T:0.34
Consensus pattern (161 bp):
AAAAAGTCCTAAATAGACGTAAACAATAACTTTTTCACACATATAATCAGTAGAAACCAAGTTCA
ATACATTCGATAAGTTTAACATCATATATTGAAACTATCAAAACTATTAAAATAGAACAATAATC
AATAATTTATATTTTTACCTATTAACGGCAC
Found at i:8107346 original size:2 final size:2
Alignment explanation
Indices: 8107339--8107391 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
8107329 TTAAGCAGAA
8107339 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
8107381 AG AG AG AG AG A
1 AG AG AG AG AG A
8107392 TACAGAACAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8119691 original size:124 final size:123
Alignment explanation
Indices: 8119542--8119785 Score: 312
Period size: 124 Copynumber: 2.0 Consensus size: 123
8119532 TTCTAAAATT
*
8119542 AAAAATTGAAGGGGATTATTAAAGGCATTTT-TGACCAAAAATGCCTTCAATAATCCCCTCCAAT
1 AAAAATTAAAGGGGATTATTAAAGGCATTTTCTGACCAAAAATGCCTTCAATAATCCCCTCC-AT
* * * *
8119606 ATTTT-TTGAAGATTATTCAAGGTGTTTTTTACCAGAAAATTCCTTGAATAATTCCTTATA
65 -TTTTATTGAAGATTAGTCAAGGTGTTTTTGACCA-AAAATGCCTTGAATAATCCCTTATA
* * * * * * *
8119666 AAAAATTAAATGGGTTTATTCAAGGCATTTTCTGGCCAAAAATGCCTTGAATAATCCCTTTCATT
1 AAAAATTAAAGGGGATTATTAAAGGCATTTTCTGACCAAAAATGCCTTCAATAATCCCCTCCATT
** *
8119731 TTTATTGGGGATTAGTCAAGGTGTTTTTGATCAAAAATGCCTTGAATAATCCCTT
66 TTTATTGAAGATTAGTCAAGGTGTTTTTGACCAAAAATGCCTTGAATAATCCCTT
8119786 CTAATTTTTC
Statistics
Matches: 103, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
123 24 0.23
124 53 0.51
125 26 0.25
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (123 bp):
AAAAATTAAAGGGGATTATTAAAGGCATTTTCTGACCAAAAATGCCTTCAATAATCCCCTCCATT
TTTATTGAAGATTAGTCAAGGTGTTTTTGACCAAAAATGCCTTGAATAATCCCTTATA
Found at i:8120626 original size:61 final size:59
Alignment explanation
Indices: 8120461--8120628 Score: 147
Period size: 61 Copynumber: 2.7 Consensus size: 59
8120451 TAATAAGGCT
* ** * ** *
8120461 AAAAACGCCTTCAATAATCTCCTCCAATTTGTTTTTGGGGATTATTGAAGGTGTTTTAGGC
1 AAAAACTCCTTCAATAATCTCCTCCAA-TT-TTTGAGTGGATTATTGAAGACGTTTTAGCC
* * ** * * *
8120522 AAAAAATCCTTCAATAATCCCCTTAAATTTTGATGAATAGATTATTGAAGACGTTTTTGACC
1 AAAAACTCCTTCAATAATCTCCTCCAATTTT--TGAGTGGATTATTGAAGACGTTTTAG-CC
*
8120584 AAAAACTCATTCAATAATCTCCTCCAATTTCTTGAGTGGATTATT
1 AAAAACTCCTTCAATAATCTCCTCCAATTT-TTGAGTGGATTATT
8120629 CAAGGCATTT
Statistics
Matches: 82, Mismatches: 21, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
59 2 0.02
60 2 0.02
61 51 0.62
62 26 0.32
63 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (59 bp):
AAAAACTCCTTCAATAATCTCCTCCAATTTTTGAGTGGATTATTGAAGACGTTTTAGCC
Found at i:8122651 original size:61 final size:61
Alignment explanation
Indices: 8122542--8122688 Score: 138
Period size: 61 Copynumber: 2.4 Consensus size: 61
8122532 GCCCTCCTAT
** * *
8122542 CATAATTGGCAAAAATTATTATAATGCCTTCCTATCATAACTACGAAAATATCT-CTCATAC
1 CATAATTGGCCTAAATTACTATAATGCCTTCATATCATAACTACGAAAAT-TCTCCTCATAC
* * * * * * *
8122603 CATAATTGGCCTAAATTACTATAAT-CCTCTTATATGATAATTATGAAAATTTTCCTCCTAT
1 CATAATTGGCCTAAATTACTATAATGCCT-TCATATCATAACTACGAAAATTCTCCTCATAC
*
8122664 CATAATT-GACTAAAATTACTATAAT
1 CATAATTGGCCT-AAATTACTATAAT
8122689 ACTTCTCATA
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
60 8 0.11
61 63 0.89
ACGTcount: A:0.39, C:0.18, G:0.06, T:0.37
Consensus pattern (61 bp):
CATAATTGGCCTAAATTACTATAATGCCTTCATATCATAACTACGAAAATTCTCCTCATAC
Found at i:8123960 original size:62 final size:63
Alignment explanation
Indices: 8123877--8124005 Score: 210
Period size: 62 Copynumber: 2.1 Consensus size: 63
8123867 AAGGGGATCC
8123877 ACAAGGAAATCAAGGTTCAAGCT-ATTTTTTATT-TAATTTTTGCCCAATATTTATTTGATTTAA
1 ACAAGGAAATCAAGGTTCAAGCTAATTTTTT-TTGTAATTTTT-CCCAATATTTATTTGATTTAA
*
8123940 ACAA-GAAATCAAGGTTCAAGCTAATTTTTTTTGTAATTTTTCCCAATATTTATTTGATTTGA
1 ACAAGGAAATCAAGGTTCAAGCTAATTTTTTTTGTAATTTTTCCCAATATTTATTTGATTTAA
8124002 ACAA
1 ACAA
8124006 TCATATTAGA
Statistics
Matches: 63, Mismatches: 1, Indels: 5
0.91 0.01 0.07
Matches are distributed among these distances:
62 44 0.70
63 19 0.30
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.43
Consensus pattern (63 bp):
ACAAGGAAATCAAGGTTCAAGCTAATTTTTTTTGTAATTTTTCCCAATATTTATTTGATTTAA
Found at i:8126540 original size:18 final size:17
Alignment explanation
Indices: 8126517--8126562 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
8126507 ATAAATGTGC
8126517 ATAACTTCAACCACTCCA
1 ATAACTTCAACC-CTCCA
* *
8126535 ATAACTTTAGTCCCTCCA
1 ATAACTTCA-ACCCTCCA
8126553 ATAACTTCAA
1 ATAACTTCAA
8126563 TCCATGCGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 21 0.91
19 2 0.09
ACGTcount: A:0.37, C:0.33, G:0.02, T:0.28
Consensus pattern (17 bp):
ATAACTTCAACCCTCCA
Found at i:8127058 original size:158 final size:158
Alignment explanation
Indices: 8126748--8127084 Score: 358
Period size: 158 Copynumber: 2.1 Consensus size: 158
8126738 TTAAATATGC
* *
8126748 AATAGTTTTCACTTTTCACAAAGTCATTACATCTCAATACGTAAAAAACACTATCTTGTTCAATA
1 AATAGTTTTCACTTTTCACAAAATCATTACATCTCAATACGTAAAAAACACTATCTAGTTCAATA
* * * * * * *
8126813 TTGAATTTCTTACAATTTTTAGGCTTTCAATTACACTGACAACTAGTTCATCAACAATCATAATA
66 CTAAATTTCCTACAATGTTTAGGCTTTCAATTACACTGACAAATAGTTCATAAACAATCACAATA
* * * **
8126878 TATAACCAAAATCATAACCAAAATGTAA
131 CAGAACCAAAATCAAAACCAAAATACAA
* * * * *
8126906 AATAGTTTTCA-TCTTTCACAAAATCATTGCATCTTAATATGTATAAAACACTATCTAGTTTAAT
1 AATAGTTTTCACT-TTTCACAAAATCATTACATCTCAATACGTAAAAAACACTATCTAGTTCAAT
* * * * *
8126970 ACTAAATTTCCTACAATGTTTAGGGTTTCAGTTATTA-T-A-AATATAGTTCATAAATAATTACA
65 ACTAAATTTCCTACAATGTTTAGGCTTTCAATTA-CACTGACAA-ATAGTTCATAAACAATCACA
* * * *
8127032 ATACAGAATCATAATCACAAAGCAAAATACAC
128 ATACAGAACCAAAATCA-AAACCAAAATACAA
8127064 AATAGTTTTCACTTTTCACAA
1 AATAGTTTTCACTTTTCACAA
8127085 GTGTGATTGT
Statistics
Matches: 146, Mismatches: 28, Indels: 10
0.79 0.15 0.05
Matches are distributed among these distances:
156 2 0.01
157 30 0.21
158 112 0.77
159 2 0.01
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.35
Consensus pattern (158 bp):
AATAGTTTTCACTTTTCACAAAATCATTACATCTCAATACGTAAAAAACACTATCTAGTTCAATA
CTAAATTTCCTACAATGTTTAGGCTTTCAATTACACTGACAAATAGTTCATAAACAATCACAATA
CAGAACCAAAATCAAAACCAAAATACAA
Found at i:8127694 original size:39 final size:39
Alignment explanation
Indices: 8127651--8127733 Score: 98
Period size: 39 Copynumber: 2.1 Consensus size: 39
8127641 TCGTATGCTA
8127651 AATCATACTATATCAATGTTGAA-GATGACCC-ATATAGTG
1 AATCATACTATATCAATGTT-AATGATGACCCAATAT-GTG
* * * *
8127690 AATCATGCTGTATCGATGTTAATGATGACTCAATATGTG
1 AATCATACTATATCAATGTTAATGATGACCCAATATGTG
8127729 AATCA
1 AATCA
8127734 CCTCTTATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
38 2 0.05
39 32 0.84
40 4 0.11
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (39 bp):
AATCATACTATATCAATGTTAATGATGACCCAATATGTG
Found at i:8128680 original size:116 final size:116
Alignment explanation
Indices: 8128471--8128698 Score: 411
Period size: 116 Copynumber: 2.0 Consensus size: 116
8128461 GTCAAACTAG
* *
8128471 TGACTTTTAAAAAGTATAACCTTATTCCCTACTCCAATGTACTCTAACTTAATGATATCTTCTAA
1 TGACATTTAAAAAGTATAACCTTATTCCCTACTCCAAAGTACTCTAACTTAATGATATCTTCTAA
*
8128536 GATACCATAAAAGTTACACTCATAATCATTATAACAACTTTCTTTCACACA
66 AATACCATAAAAGTTACACTCATAATCATTATAACAACTTTCTTTCACACA
*
8128587 TGACATTTAAAAAGTATAACCTTATTCCCTACTTCAAAGTACTCTAACTTAATGATATCTTCTAA
1 TGACATTTAAAAAGTATAACCTTATTCCCTACTCCAAAGTACTCTAACTTAATGATATCTTCTAA
*
8128652 AATACCATAAAAGTTACACTCATAATCATTGTAACAACTTTCTTTCA
66 AATACCATAAAAGTTACACTCATAATCATTATAACAACTTTCTTTCA
8128699 TGCATACCCC
Statistics
Matches: 107, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
116 107 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36
Consensus pattern (116 bp):
TGACATTTAAAAAGTATAACCTTATTCCCTACTCCAAAGTACTCTAACTTAATGATATCTTCTAA
AATACCATAAAAGTTACACTCATAATCATTATAACAACTTTCTTTCACACA
Found at i:8130668 original size:17 final size:17
Alignment explanation
Indices: 8130648--8130684 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
8130638 TTTACATAAC
*
8130648 TAAAAAAATTAAAATAT
1 TAAAAAAAATAAAATAT
8130665 TAAAAAAAATAAAATAT
1 TAAAAAAAATAAAATAT
8130682 TAA
1 TAA
8130685 CAATTTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (17 bp):
TAAAAAAAATAAAATAT
Found at i:8130740 original size:10 final size:9
Alignment explanation
Indices: 8130703--8130757 Score: 58
Period size: 9 Copynumber: 5.9 Consensus size: 9
8130693 ATCAATTATA
8130703 AAATAAAAT
1 AAATAAAAT
*
8130712 AGAATTTAAAT
1 A-AA-TAAAAT
8130723 AAATAAAAT
1 AAATAAAAT
8130732 AACATAAAAT
1 AA-ATAAAAT
8130742 AAA-AAAAT
1 AAATAAAAT
*
8130750 TAATAAAA
1 AAATAAAA
8130758 AGAAAAGGAC
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
8 7 0.18
9 13 0.33
10 13 0.33
11 6 0.15
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.24
Consensus pattern (9 bp):
AAATAAAAT
Found at i:8131832 original size:3 final size:3
Alignment explanation
Indices: 8131826--8131875 Score: 82
Period size: 3 Copynumber: 16.7 Consensus size: 3
8131816 ATAATAATTA
* *
8131826 TAC TAC TAC TAG TAC TAC TAC TAT TAC TAC TAC TAC TAC TAC TAC TAC
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
8131874 TA
1 TA
8131876 ATAATAATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.34, C:0.28, G:0.02, T:0.36
Consensus pattern (3 bp):
TAC
Found at i:8131880 original size:3 final size:3
Alignment explanation
Indices: 8131874--8131902 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
8131864 CTACTACTAC
8131874 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
8131903 TATCTACAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:8133508 original size:63 final size:62
Alignment explanation
Indices: 8133231--8133588 Score: 264
Period size: 63 Copynumber: 5.6 Consensus size: 62
8133221 ATTGCCTAGC
* * **
8133231 ATTATTAAAGGCATTTTGGCCAAAAACGCCTTCAATAATACATTA-AAAAAATTTTGGAAAAAG
1 ATTATTAAAGGCTTTTTGGCCAAAAACGCCTTCAATAATCCA-TACAAAAAATTTTGG-AAGGG
* * * * * * *
8133294 ATTATTGAAGGCTTTTTCGACTAAAAATGCCTTCAATAATCCATGCAAAAAATTTTATTGAAAGG
1 ATTATTAAAGGCTTTTT-GGCCAAAAACGCCTTCAATAATCCATACAAAAAA-TTT-TGGAAGGG
* * *
8133359 ATTATTAAAAGTG-TTTTTGGCC-AAAATGCTTTCAATAATCCCT-CATAAAAATTTAAT-G-AG
1 ATTATT-AAAG-GCTTTTTGGCCAAAAACGCCTTCAATAATCCATACA-AAAAATTT--TGGAAG
8133419 GCG
61 G-G
* ** * *
8133422 ATTATTGAA-GCAAATTTGGCCAAAAACGCCTTTAATAATCCAAACAAAAAATTTTGGAAGGG
1 ATTATTAAAGGC-TTTTTGGCCAAAAACGCCTTCAATAATCCATACAAAAAATTTTGGAAGGG
* * * *
8133484 ATTATTAAAGGCGTTTTTGTCCAAAAATGCATTCAATAATCTATACAAAAAATTTTGTTG-AGGA
1 ATTATTAAAGGC-TTTTTGGCCAAAAACGCCTTCAATAATCCATACAAAAAATTTTG--GAAGG-
*
8133548 A
62 G
* * *
8133549 ATTATTGAAGGCATTTTTGGCCAAAAACGCATTGAATAAT
1 ATTATTAAAGGC-TTTTTGGCCAAAAACGCCTTCAATAAT
8133589 TCATGAATTA
Statistics
Matches: 237, Mismatches: 39, Indels: 36
0.76 0.12 0.12
Matches are distributed among these distances:
60 1 0.00
61 1 0.00
62 21 0.09
63 94 0.40
64 58 0.24
65 51 0.22
66 10 0.04
67 1 0.00
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.32
Consensus pattern (62 bp):
ATTATTAAAGGCTTTTTGGCCAAAAACGCCTTCAATAATCCATACAAAAAATTTTGGAAGGG
Found at i:8133546 original size:127 final size:128
Alignment explanation
Indices: 8133316--8133588 Score: 311
Period size: 127 Copynumber: 2.1 Consensus size: 128
8133306 TTTTTCGACT
* ** * *
8133316 AAAAATGCCTTCAATAATCCATGCAAAAAATTTTATTGAAAGGATTATTAAAAGTGTTTTTGGCC
1 AAAAACGCCTTCAATAATCCAAACAAAAAATTTTATGGAAAGGATTATTAAAAGCGTTTTTGGCC
* * **
8133381 AAAATGCTTTCAATAATCCCTCATAAAAATTTAATGAGGCGATTATTGAA-GCAAATTTGGCC
66 AAAATGCATTCAATAATCCATCATAAAAATTTAATGAGGAAATTATTGAAGGCAAATTTGGCC
* * * *
8133443 AAAAACGCCTTTAATAATCCAAACAAAAAA-TTT-TGGAAGGGATTATTAAAGGCGTTTTTGTCC
1 AAAAACGCCTTCAATAATCCAAACAAAAAATTTTATGGAAAGGATTATTAAAAGCGTTTTTGGCC
* ** **
8133506 AAAAATGCATTCAATAATCTATACA-AAAAATTTTGTTGAGGAAATTATTGAAGGCATTTTTGGC
66 -AAAATGCATTCAATAATCCAT-CATAAAAA-TTTAATGAGGAAATTATTGAAGGCAAATTTGGC
8133570 C
128 C
* *
8133571 AAAAACGCATTGAATAAT
1 AAAAACGCCTTCAATAAT
8133589 TCATGAATTA
Statistics
Matches: 122, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
125 25 0.20
126 26 0.21
127 45 0.37
128 26 0.21
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.32
Consensus pattern (128 bp):
AAAAACGCCTTCAATAATCCAAACAAAAAATTTTATGGAAAGGATTATTAAAAGCGTTTTTGGCC
AAAATGCATTCAATAATCCATCATAAAAATTTAATGAGGAAATTATTGAAGGCAAATTTGGCC
Found at i:8133633 original size:46 final size:44
Alignment explanation
Indices: 8133548--8133666 Score: 116
Period size: 46 Copynumber: 2.7 Consensus size: 44
8133538 TTGTTGAGGA
* * *
8133548 AATTATTGAAGGCATTTTTGGCCAAAAACGCATTGAATAATTCATG
1 AATTATTCAAGGAATTTTAGGCCAAAAACGCATTGAATAA--CATG
** *
8133594 AATTATTCAAGGAATTTTAGGCCCGAAACAGC-TTTAATAACATG
1 AATTATTCAAGGAATTTTAGGCCAAAAAC-GCATTGAATAACATG
**
8133638 AATTATTCAAGGCGTTTTTA-GCCAAAAAC
1 AATTATTCAAGG-AATTTTAGGCCAAAAAC
8133667 AGCTTCAATA
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
44 23 0.38
45 5 0.08
46 31 0.51
47 2 0.03
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (44 bp):
AATTATTCAAGGAATTTTAGGCCAAAAACGCATTGAATAACATG
Found at i:8133667 original size:44 final size:44
Alignment explanation
Indices: 8133548--8133678 Score: 140
Period size: 44 Copynumber: 2.9 Consensus size: 44
8133538 TTGTTGAGGA
* * *
8133548 AATTATTGAAGGCATTTTTGGCCAAAAAC-GCATTGAATAATTCATG
1 AATTATTCAAGGCATTTTTAGCCAAAAACAGC-TTCAATAA--CATG
* ** *
8133594 AATTATTCAAGG-AATTTTAGGCCCGAAACAGCTTTAATAACATG
1 AATTATTCAAGGCATTTTTA-GCCAAAAACAGCTTCAATAACATG
*
8133638 AATTATTCAAGGCGTTTTTAGCCAAAAACAGCTTCAATAAC
1 AATTATTCAAGGCATTTTTAGCCAAAAACAGCTTCAATAAC
8133679 CCCATTCAAT
Statistics
Matches: 71, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
44 34 0.48
45 10 0.14
46 25 0.35
47 2 0.03
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (44 bp):
AATTATTCAAGGCATTTTTAGCCAAAAACAGCTTCAATAACATG
Found at i:8133947 original size:12 final size:14
Alignment explanation
Indices: 8133918--8133944 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8133908 TTTTTCTATG
8133918 TTCATATAAATATA
1 TTCATATAAATATA
8133932 TTCATATAAATAT
1 TTCATATAAATAT
8133945 TCAATTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.44
Consensus pattern (14 bp):
TTCATATAAATATA
Found at i:8137974 original size:76 final size:76
Alignment explanation
Indices: 8137883--8138027 Score: 254
Period size: 76 Copynumber: 1.9 Consensus size: 76
8137873 TGTCAGAACG
*
8137883 CTTTCAATAACCTCATTTAATATTTTGTTACAGATTATTGAAGGCATTTTTAGAGGGGATTATTC
1 CTTTCAATAACCTCATTTAATATTTTGTTACAGATTATTGAAGGCATTTTTAGAGAGGATTATTC
8137948 AAGGCAGAATA
66 AAGGCAGAATA
* * *
8137959 CTTTCAATAATCTCATTTAATATTTTGTTACGGATTATTGAAGGCATTTTTAGAGAGGATTATTG
1 CTTTCAATAACCTCATTTAATATTTTGTTACAGATTATTGAAGGCATTTTTAGAGAGGATTATTC
8138024 AAGG
66 AAGG
8138028 TATTTTTTGC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
76 65 1.00
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (76 bp):
CTTTCAATAACCTCATTTAATATTTTGTTACAGATTATTGAAGGCATTTTTAGAGAGGATTATTC
AAGGCAGAATA
Found at i:8144494 original size:20 final size:20
Alignment explanation
Indices: 8144469--8144509 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
8144459 GATTTGAATG
8144469 TTATAGTGAAAATATTTGTT
1 TTATAGTGAAAATATTTGTT
8144489 TTATAGTGAAAATATTTGTT
1 TTATAGTGAAAATATTTGTT
8144509 T
1 T
8144510 AATGATAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.15, T:0.51
Consensus pattern (20 bp):
TTATAGTGAAAATATTTGTT
Found at i:8144752 original size:68 final size:68
Alignment explanation
Indices: 8144639--8144765 Score: 182
Period size: 68 Copynumber: 1.9 Consensus size: 68
8144629 GCATTACACT
* * * * *
8144639 AATGATTAAGATGTTTATAATATTATTTTTGCTGGTATATAAATGGATGAATACCTTCTATATAT
1 AATGAATAAGATGTTTATAAAATTATTTCTACTAGTATATAAATGGATGAATACCTTCTATATAT
8144704 ATG
66 ATG
* * *
8144707 AATGAATAAGATGTTTGTAAAATTATTTCTACTAGTATATGAATGGATGATTACCTTCT
1 AATGAATAAGATGTTTATAAAATTATTTCTACTAGTATATAAATGGATGAATACCTTCT
8144766 TACCTTCTGT
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
68 51 1.00
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.43
Consensus pattern (68 bp):
AATGAATAAGATGTTTATAAAATTATTTCTACTAGTATATAAATGGATGAATACCTTCTATATAT
ATG
Found at i:8145084 original size:15 final size:15
Alignment explanation
Indices: 8145064--8145099 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
8145054 GGTGTAACTC
*
8145064 TTTATCTATGTTTGT
1 TTTATCGATGTTTGT
8145079 TTTATCGATGTTTGT
1 TTTATCGATGTTTGT
8145094 TTTATC
1 TTTATC
8145100 AGACTTGGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.14, C:0.08, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTATCGATGTTTGT
Found at i:8146845 original size:35 final size:35
Alignment explanation
Indices: 8146806--8146873 Score: 86
Period size: 35 Copynumber: 1.9 Consensus size: 35
8146796 TGTATTTGAG
*
8146806 TTTTTCTTTTTC-TTTTCT-TTTTCATTCATTTTTCA
1 TTTTTCATTTTCATTTT-TATTTT-ATTCATTTTTCA
*
8146841 TTTTTCATTTTCATTTTTATTTTTTTCATTTTT
1 TTTTTCATTTTCATTTTTATTTTATTCATTTTT
8146874 TTAAGCATAG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 21 0.72
36 8 0.28
ACGTcount: A:0.10, C:0.13, G:0.00, T:0.76
Consensus pattern (35 bp):
TTTTTCATTTTCATTTTTATTTTATTCATTTTTCA
Found at i:8146865 original size:20 final size:21
Alignment explanation
Indices: 8146823--8146872 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
8146813 TTTTCTTTTC
8146823 TTTTTCA--TTCATTTTTCA-
1 TTTTTCATTTTCATTTTTCAT
8146841 TTTTTCATTTTCATTTTT-ATT
1 TTTTTCATTTTCATTTTTCA-T
8146862 TTTTTCATTTT
1 TTTTTCATTTT
8146873 TTTAAGCATA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
18 7 0.25
19 1 0.04
20 9 0.32
21 11 0.39
ACGTcount: A:0.14, C:0.12, G:0.00, T:0.74
Consensus pattern (21 bp):
TTTTTCATTTTCATTTTTCAT
Found at i:8146873 original size:7 final size:7
Alignment explanation
Indices: 8146830--8146864 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
8146820 TTCTTTTTCA
8146830 TTCATTT
1 TTCATTT
8146837 TTCATTT
1 TTCATTT
8146844 TTCA-TT
1 TTCATTT
8146850 TTCATTT
1 TTCATTT
8146857 TT-ATTT
1 TTCATTT
8146863 TT
1 TT
8146865 TTCATTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 12 0.44
7 15 0.56
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.74
Consensus pattern (7 bp):
TTCATTT
Found at i:8154242 original size:81 final size:81
Alignment explanation
Indices: 8154141--8154302 Score: 252
Period size: 81 Copynumber: 2.0 Consensus size: 81
8154131 CAATGCATGA
* * *
8154141 AAGATAATATTTTCCTTTTGAAGAATTTTCATAAATAAACTTTCATTTATTCCATAAAAGTCTAT
1 AAGATAATATTTACCCTTTGAAAAATTTTCATAAATAAACTTTCATTTATTCCATAAAAGTCTAT
* *
8154206 TTACATATAATCTATT
66 GTACATAGAATCTATT
* *
8154222 AAGATAATATTTACCCTTTGAAAAATTTTTATAAATAAACTTTCATTTATTCCATAGAAGTCTAT
1 AAGATAATATTTACCCTTTGAAAAATTTTCATAAATAAACTTTCATTTATTCCATAAAAGTCTAT
*
8154287 GTACATAGAGTCTATT
66 GTACATAGAATCTATT
8154303 CTTCTTAATT
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 73 1.00
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.43
Consensus pattern (81 bp):
AAGATAATATTTACCCTTTGAAAAATTTTCATAAATAAACTTTCATTTATTCCATAAAAGTCTAT
GTACATAGAATCTATT
Found at i:8154392 original size:16 final size:16
Alignment explanation
Indices: 8154371--8154402 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
8154361 AAGTTCAACA
8154371 AACATTATCCATGCTT
1 AACATTATCCATGCTT
8154387 AACATTATCCATGCTT
1 AACATTATCCATGCTT
8154403 TCCTATTAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.38
Consensus pattern (16 bp):
AACATTATCCATGCTT
Found at i:8158370 original size:20 final size:22
Alignment explanation
Indices: 8158347--8158393 Score: 62
Period size: 20 Copynumber: 2.2 Consensus size: 22
8158337 TAGAATCTAG
*
8158347 AAAATTTTTA-GAAAAA-ACCT
1 AAAATTTTTAGGAAAAAGACCA
*
8158367 AAAACTTTTAGGAAAAAGACCA
1 AAAATTTTTAGGAAAAAGACCA
8158389 AAAAT
1 AAAAT
8158394 CACTAATTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 9 0.41
21 6 0.27
22 7 0.32
ACGTcount: A:0.57, C:0.11, G:0.09, T:0.23
Consensus pattern (22 bp):
AAAATTTTTAGGAAAAAGACCA
Found at i:8162758 original size:17 final size:17
Alignment explanation
Indices: 8162736--8162776 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
8162726 TTATAGATGG
8162736 TGGAGAGGTGCAAACGA
1 TGGAGAGGTGCAAACGA
*
8162753 TGGAGAGGTGCAAACGG
1 TGGAGAGGTGCAAACGA
8162770 TGGAGAG
1 TGGAGAG
8162777 TGGTCTGGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.32, C:0.10, G:0.46, T:0.12
Consensus pattern (17 bp):
TGGAGAGGTGCAAACGA
Found at i:8162850 original size:2 final size:2
Alignment explanation
Indices: 8162843--8162877 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
8162833 AAAGAGGGAA
8162843 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
8162878 ATTTTAGGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8171187 original size:17 final size:18
Alignment explanation
Indices: 8171150--8171193 Score: 63
Period size: 17 Copynumber: 2.4 Consensus size: 18
8171140 TTTCTTTGAC
8171150 TTTATTTATTTGTAATAAT
1 TTTATTT-TTTGTAATAAT
*
8171169 TTTATTTTTT-TAATTAT
1 TTTATTTTTTGTAATAAT
8171186 TTTATTTT
1 TTTATTTT
8171194 ATTCAAGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 14 0.58
18 3 0.12
19 7 0.29
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (18 bp):
TTTATTTTTTGTAATAAT
Found at i:8171454 original size:17 final size:16
Alignment explanation
Indices: 8171427--8171473 Score: 69
Period size: 17 Copynumber: 2.9 Consensus size: 16
8171417 TATGAAAAAA
8171427 ATTACTTTTTTATTTAT
1 ATTA-TTTTTTATTTAT
8171444 ATATATTTTTTATTTAT
1 AT-TATTTTTTATTTAT
8171461 ATTA-TTTTTATTT
1 ATTATTTTTTATTT
8171474 GATTTTTTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
15 9 0.31
16 2 0.07
17 16 0.55
18 2 0.07
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (16 bp):
ATTATTTTTTATTTAT
Found at i:8171461 original size:15 final size:14
Alignment explanation
Indices: 8171432--8171487 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 14
8171422 AAAAAATTAC
8171432 TTTTTTATTTATATAT
1 TTTTTTA-TT-TATAT
8171448 ATTTTTTATTTATAT
1 -TTTTTTATTTATAT
8171463 TATTTTTATTTGAT-T
1 T-TTTTTATTT-ATAT
*
8171478 TTTTGTATTT
1 TTTTTTATTT
8171488 TTTTTAAAGA
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
14 9 0.25
15 16 0.44
16 4 0.11
17 7 0.19
ACGTcount: A:0.21, C:0.00, G:0.04, T:0.75
Consensus pattern (14 bp):
TTTTTTATTTATAT
Found at i:8180943 original size:22 final size:23
Alignment explanation
Indices: 8180904--8180956 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 23
8180894 TTTCAAACAT
8180904 AATTAAAAAATACTAAAATA-GAA
1 AATTAAAAAATACTAAAA-AGGAA
8180927 AATTAAAAACA-AC-AAAAAGGAA
1 AATTAAAAA-ATACTAAAAAGGAA
*
8180949 AGTTAAAA
1 AATTAAAA
8180957 CTAAAAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 1 0.04
22 14 0.52
23 11 0.41
24 1 0.04
ACGTcount: A:0.70, C:0.06, G:0.08, T:0.17
Consensus pattern (23 bp):
AATTAAAAAATACTAAAAAGGAA
Found at i:8181802 original size:89 final size:91
Alignment explanation
Indices: 8181661--8181828 Score: 214
Period size: 89 Copynumber: 1.9 Consensus size: 91
8181651 AAAAAAAGCG
** * * *
8181661 AATGATGAGGTGCATGTCACAAGTCTCATGAAGAGTCAACTTGAATAAAATTAAT-ATA-AATTA
1 AATGATGACATGCATGTCACAAGTCTCATCAAGAGTCAACATGAAAAAAATTAATAATAGAATTA
*
8181724 TTAGGTTCTTTTTCCGAAAAAAAAAA
66 TTAAGTTCTTTTTCCGAAAAAAAAAA
* * * *
8181750 AATGATGACATGCATGTGACAAGTTTCATCAAGATTTAACATGAAAAAAATTAATAATATGAATT
1 AATGATGACATGCATGTCACAAGTCTCATCAAGAGTCAACATGAAAAAAATTAATAATA-GAATT
*
8181815 ATTAAGTTTTTTTT
65 ATTAAGTTCTTTTT
8181829 TCCACTTACA
Statistics
Matches: 65, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
89 46 0.71
90 3 0.05
92 16 0.25
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.34
Consensus pattern (91 bp):
AATGATGACATGCATGTCACAAGTCTCATCAAGAGTCAACATGAAAAAAATTAATAATAGAATTA
TTAAGTTCTTTTTCCGAAAAAAAAAA
Found at i:8185286 original size:3 final size:3
Alignment explanation
Indices: 8185278--8185310 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
8185268 AAAAAGAAGG
8185278 GAA GAA GAA GAA GAA GAA GAA GAA GAA G-A GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
8185311 GAAAACGAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:8186763 original size:3 final size:3
Alignment explanation
Indices: 8186757--8186794 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
8186747 TTTCAATGAC
8186757 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8186795 AATTAAAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:8192828 original size:58 final size:58
Alignment explanation
Indices: 8192708--8192846 Score: 156
Period size: 58 Copynumber: 2.4 Consensus size: 58
8192698 CTCTTTAGTG
* *** * *
8192708 GTGATATCCAAAGTTATCTTACATTTTCTCAATGGTGATATCTAAGTTTCCTTTGATG
1 GTGATATCCAAAGTCATCTTACATTTTCTCAATGACAATATCTAAGTTCCCTTTGATA
* * *
8192766 GTGATATCCAAAGTCAT-TTGCATTTTCTCAGTGACAATATCTGAGTTCCCTTTGATAA
1 GTGATATCCAAAGTCATCTTACATTTTCTCAATGACAATATCTAAGTTCCCTTTGAT-A
* *
8192824 GTGATATTCAAGGTCATC-TACAT
1 GTGATATCCAAAGTCATCTTACAT
8192847 ATTTTTCCTC
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
57 32 0.48
58 35 0.52
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (58 bp):
GTGATATCCAAAGTCATCTTACATTTTCTCAATGACAATATCTAAGTTCCCTTTGATA
Found at i:8193159 original size:24 final size:24
Alignment explanation
Indices: 8193131--8193177 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
8193121 TCTTCAGTGG
*
8193131 TGATA-TTGAAGTTCTTTTTTATTA
1 TGATATTTGAAG-TCATTTTTATTA
8193155 TGATATTTGAAGTCATTTTTATT
1 TGATATTTGAAGTCATTTTTATT
8193178 TTCTCGGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.26, C:0.04, G:0.13, T:0.57
Consensus pattern (24 bp):
TGATATTTGAAGTCATTTTTATTA
Found at i:8194787 original size:16 final size:17
Alignment explanation
Indices: 8194750--8194791 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
8194740 ATTGGATATG
*
8194750 TATTTAGTTATGTTTTA
1 TATTTAGTTATGTTTAA
*
8194767 TATTTATTTAT-TTTAA
1 TATTTAGTTATGTTTAA
8194783 TATTT-GTTA
1 TATTTAGTTA
8194792 ATATGCATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 3 0.14
16 9 0.41
17 10 0.45
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (17 bp):
TATTTAGTTATGTTTAA
Found at i:8198572 original size:16 final size:17
Alignment explanation
Indices: 8198535--8198576 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
8198525 ATTGGATATG
*
8198535 TATTTAGTTATGTTTTA
1 TATTTAGTTATGTTTAA
*
8198552 TATTTATTTAT-TTTAA
1 TATTTAGTTATGTTTAA
8198568 TATTT-GTTA
1 TATTTAGTTA
8198577 ATATGCATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 3 0.14
16 9 0.41
17 10 0.45
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (17 bp):
TATTTAGTTATGTTTAA
Found at i:8201702 original size:58 final size:58
Alignment explanation
Indices: 8201584--8201701 Score: 193
Period size: 58 Copynumber: 2.1 Consensus size: 58
8201574 TCTTAAAGCA
** * *
8201584 TTTAGAAATTTTATTTTCAAGGGAAATTGATACTTTCAACTTTTTCTCAAAAATATTT
1 TTTAGAAAACTTATTTTCAAGGAAAATCGATACTTTCAACTTTTTCTCAAAAATATTT
8201642 TTTAGAAAACTTATTTTCAAGGAAAATCGATACTTTCAACTTTTTCTC-AAAATATTT
1 TTTAGAAAACTTATTTTCAAGGAAAATCGATACTTTCAACTTTTTCTCAAAAATATTT
8201699 TTT
1 TTT
8201702 TTTTAGAATT
Statistics
Matches: 56, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
57 12 0.21
58 44 0.79
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.46
Consensus pattern (58 bp):
TTTAGAAAACTTATTTTCAAGGAAAATCGATACTTTCAACTTTTTCTCAAAAATATTT
Found at i:8201733 original size:13 final size:13
Alignment explanation
Indices: 8201717--8201742 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8201707 GAATTTTATT
8201717 TTTAAAAAAATAA
1 TTTAAAAAAATAA
8201730 TTTAAAAAAATAA
1 TTTAAAAAAATAA
8201743 AATAAAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
TTTAAAAAAATAA
Found at i:8201797 original size:3 final size:3
Alignment explanation
Indices: 8201789--8201871 Score: 105
Period size: 3 Copynumber: 27.7 Consensus size: 3
8201779 CTAATCAATA
* *
8201789 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAG AAC AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
8201837 AAC AAT AAT AAC AAT AAT AA- AAGA AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AA
8201872 AAAAAAACTT
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
2 2 0.03
3 66 0.94
4 2 0.03
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.25
Consensus pattern (3 bp):
AAT
Found at i:8202214 original size:19 final size:19
Alignment explanation
Indices: 8202187--8202223 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8202177 GATGGAATTC
8202187 TCACCGAAAACTGGGTTTT
1 TCACCGAAAACTGGGTTTT
*
8202206 TCACTGAAAACTGGGTTT
1 TCACCGAAAACTGGGTTT
8202224 CTGGCTGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (19 bp):
TCACCGAAAACTGGGTTTT
Found at i:8202319 original size:12 final size:11
Alignment explanation
Indices: 8202283--8202342 Score: 50
Period size: 11 Copynumber: 5.3 Consensus size: 11
8202273 CAAATTTTAG
*
8202283 AAAATTTTCAA
1 AAAATTTCCAA
*
8202294 AAATTTTCCAAA
1 AAAATTTCC-AA
8202306 AAAACTTTCCAAA
1 AAAA-TTTCC-AA
*
8202319 AAAAATT-CAA
1 AAAATTTCCAA
*
8202329 AAAATTTCCTA
1 AAAATTTCCAA
8202340 AAA
1 AAA
8202343 GTTTTAAACT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
10 8 0.20
11 13 0.32
12 7 0.17
13 12 0.30
ACGTcount: A:0.57, C:0.15, G:0.00, T:0.28
Consensus pattern (11 bp):
AAAATTTCCAA
Found at i:8202323 original size:14 final size:13
Alignment explanation
Indices: 8202292--8202322 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
8202282 GAAAATTTTC
*
8202292 AAAAATTTTCCAA
1 AAAAACTTTCCAA
8202305 AAAAACTTTCCAA
1 AAAAACTTTCCAA
8202318 AAAAA
1 AAAAA
8202323 ATTCAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.61, C:0.16, G:0.00, T:0.23
Consensus pattern (13 bp):
AAAAACTTTCCAA
Found at i:8202655 original size:19 final size:19
Alignment explanation
Indices: 8202611--8202666 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
8202601 TTCAGAACAA
*
8202611 ATAAATAAAAAAATAATAG
1 ATAAATAAAAAAATAATAC
8202630 ATAAATATAAAAAAT-ATAC
1 ATAAATA-AAAAAATAATAC
* * *
8202649 ATTAATAGATAAATAATA
1 ATAAATAAAAAAATAATA
8202667 AAAAATAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
18 5 0.16
19 19 0.61
20 7 0.23
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.27
Consensus pattern (19 bp):
ATAAATAAAAAAATAATAC
Found at i:8202655 original size:27 final size:28
Alignment explanation
Indices: 8202624--8202729 Score: 112
Period size: 27 Copynumber: 3.8 Consensus size: 28
8202614 AATAAAAAAA
*
8202624 TAATAGATAAATATA-AAAAATATACAT
1 TAATAGATAAATATATAAAAATATATAT
8202651 TAATAGATAAATA-ATAAAAA-ATAATAT
1 TAATAGATAAATATATAAAAATAT-ATAT
* * *
8202678 TAATGGATTACTA-ATAAAAATATATAT
1 TAATAGATAAATATATAAAAATATATAT
*
8202705 TATTAGATAATATATATAAATAATA
1 TAATAGATAA-ATATATAAA-AATA
8202730 AAACTAAAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
26 3 0.05
27 49 0.75
28 4 0.06
29 5 0.08
30 4 0.06
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (28 bp):
TAATAGATAAATATATAAAAATATATAT
Found at i:8203083 original size:85 final size:87
Alignment explanation
Indices: 8202952--8203265 Score: 364
Period size: 80 Copynumber: 3.7 Consensus size: 87
8202942 CTAAACAAAA
* *
8202952 GCTCAGCGACTTTG-GAAAATAAATAAAGCTCCTCTAAACAAAGGCTCAACGACTTTGAAAAATA
1 GCTCAACGACTTTGAAAAAATAAATAAAGCTCCTCTAAACAAAGGCTCAACGACTTTGAAAAATA
8203016 AATAAAG-TTCTCTAAATAGAG
66 AATAAAGCTTCTCTAAATAGAG
* * * * *
8203037 GCTCAACGATTTTG-GAAAATAAATAAAGCTCTTCTAAACAGAGGCTCAATGACTTTGAAAAAAT
1 GCTCAACGACTTTGAAAAAATAAATAAAGCTCCTCTAAACAAAGGCTCAACGACTTTG-AAAAAT
* *
8203101 AAATAAAGCTTATTTAAATAGAG
65 AAATAAAGCTTCTCTAAATAGAG
* *
8203124 GCTCAACGACTTTGAAAAAAATAAATAAATCTCCTCTAAACAAAGGCTCAATGAC--T------T
1 GCTCAACGACTTTG-AAAAAATAAATAAAGCTCCTCTAAACAAAGGCTCAACGACTTTGAAAAAT
* *
8203181 AAACAAAGCTCCTCTAAATAGAG
65 AAATAAAGCTTCTCTAAATAGAG
* * *
8203204 GCTCAACGACTTTGAAAAAAATAAACAAAGCTCCTCTAAACAGAGGCATC-ACAACTTTGAAA
1 GCTCAACGACTTTG-AAAAAATAAATAAAGCTCCTCTAAACAAAGGC-TCAACGACTTTGAAA
8203266 GTAAATGCTC
Statistics
Matches: 197, Mismatches: 21, Indels: 21
0.82 0.09 0.09
Matches are distributed among these distances:
80 67 0.34
81 2 0.01
82 1 0.01
85 52 0.26
86 14 0.07
87 26 0.13
89 35 0.18
ACGTcount: A:0.45, C:0.18, G:0.14, T:0.24
Consensus pattern (87 bp):
GCTCAACGACTTTGAAAAAATAAATAAAGCTCCTCTAAACAAAGGCTCAACGACTTTGAAAAATA
AATAAAGCTTCTCTAAATAGAG
Found at i:8203171 original size:45 final size:43
Alignment explanation
Indices: 8202938--8203265 Score: 334
Period size: 43 Copynumber: 7.7 Consensus size: 43
8202928 TGATCAAAAT
* * * *
8202938 TCCTCTAAACAAAAGCTCAGCGACTTTGGAAAATAAATAAAGC
1 TCCTCTAAACAGAGGCTCAACGACTTTGAAAAATAAATAAAGC
*
8202981 TCCTCTAAACAAAGGCTCAACGACTTTGAAAAATAAATAAAG-
1 TCCTCTAAACAGAGGCTCAACGACTTTGAAAAATAAATAAAGC
* * * *
8203023 TTCTCTAAATAGAGGCTCAACGATTTTGGAAAATAAATAAAGC
1 TCCTCTAAACAGAGGCTCAACGACTTTGAAAAATAAATAAAGC
* *
8203066 TCTTCTAAACAGAGGCTCAATGACTTTGAAAAAATAAATAAAGC
1 TCCTCTAAACAGAGGCTCAACGACTTTG-AAAAATAAATAAAGC
** * * *
8203110 TTATTTAAATAGAGGCTCAACGACTTTGAAAAAAATAAATAAATC
1 TCCTCTAAACAGAGGCTCAACGACTTTG--AAAAATAAATAAAGC
* * *
8203155 TCCTCTAAACAAAGGCTCAATGAC--T------TAAACAAAGC
1 TCCTCTAAACAGAGGCTCAACGACTTTGAAAAATAAATAAAGC
* *
8203190 TCCTCTAAATAGAGGCTCAACGACTTTGAAAAAAATAAACAAAGC
1 TCCTCTAAACAGAGGCTCAACGACTTTG--AAAAATAAATAAAGC
*
8203235 TCCTCTAAACAGAGGCATC-ACAACTTTGAAA
1 TCCTCTAAACAGAGGC-TCAACGACTTTGAAA
8203266 GTAAATGCTC
Statistics
Matches: 238, Mismatches: 33, Indels: 28
0.80 0.11 0.09
Matches are distributed among these distances:
35 29 0.12
37 1 0.00
42 37 0.16
43 66 0.28
44 37 0.16
45 66 0.28
46 2 0.01
ACGTcount: A:0.45, C:0.19, G:0.13, T:0.23
Consensus pattern (43 bp):
TCCTCTAAACAGAGGCTCAACGACTTTGAAAAATAAATAAAGC
Found at i:8203206 original size:35 final size:35
Alignment explanation
Indices: 8203145--8203215 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
8203135 TTGAAAAAAA
* * *
8203145 TAAATAAATCTCCTCTAAACAAAGGCTCAATGACT
1 TAAACAAAGCTCCTCTAAACAAAGGCTCAACGACT
* *
8203180 TAAACAAAGCTCCTCTAAATAGAGGCTCAACGACT
1 TAAACAAAGCTCCTCTAAACAAAGGCTCAACGACT
8203215 T
1 T
8203216 TGAAAAAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.41, C:0.24, G:0.11, T:0.24
Consensus pattern (35 bp):
TAAACAAAGCTCCTCTAAACAAAGGCTCAACGACT
Found at i:8204271 original size:7 final size:7
Alignment explanation
Indices: 8204259--8204288 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
8204249 GTCCTCCTTT
8204259 TTTATTC
1 TTTATTC
8204266 TTTATTC
1 TTTATTC
8204273 TTTATTC
1 TTTATTC
8204280 TTT-TTC
1 TTTATTC
8204286 TTT
1 TTT
8204289 CTTTTTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.10, C:0.13, G:0.00, T:0.77
Consensus pattern (7 bp):
TTTATTC
Found at i:8204278 original size:14 final size:13
Alignment explanation
Indices: 8204259--8204315 Score: 62
Period size: 14 Copynumber: 4.3 Consensus size: 13
8204249 GTCCTCCTTT
8204259 TTTATTCTTTATTC
1 TTTATTCTTT-TTC
8204273 TTTATTCTTTTTC
1 TTTATTCTTTTTC
* *
8204286 TTTCTTTTTTTTCC
1 TTTATTCTTTTT-C
*
8204300 TTTTTTCTTTTT-
1 TTTATTCTTTTTC
8204312 TTTA
1 TTTA
8204316 CCTTTTTTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
12 3 0.08
13 13 0.35
14 21 0.57
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTATTCTTTTTC
Found at i:8204306 original size:17 final size:18
Alignment explanation
Indices: 8204286--8204323 Score: 69
Period size: 17 Copynumber: 2.2 Consensus size: 18
8204276 ATTCTTTTTC
8204286 TTTCTTTTTTTT-CCTTT
1 TTTCTTTTTTTTACCTTT
8204303 TTTCTTTTTTTTACCTTT
1 TTTCTTTTTTTTACCTTT
8204321 TTT
1 TTT
8204324 TTTAAGCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTCTTTTTTTTACCTTT
Found at i:8204308 original size:27 final size:27
Alignment explanation
Indices: 8204256--8204325 Score: 74
Period size: 27 Copynumber: 2.6 Consensus size: 27
8204246 TGAGTCCTCC
*
8204256 TTTTTTA-TTCTTTATT-CTTTATTCTT
1 TTTTTTACTT-TTTTTTCCTTTATTCTT
*
8204282 TTTCTTT-CTTTTTTTTCCTTTTTTCTT
1 TTT-TTTACTTTTTTTTCCTTTATTCTT
8204309 TTTTTTACCTTTTTTTT
1 TTTTTTA-CTTTTTTTT
8204326 TAAGCATAGT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
26 11 0.30
27 17 0.46
28 9 0.24
ACGTcount: A:0.06, C:0.14, G:0.00, T:0.80
Consensus pattern (27 bp):
TTTTTTACTTTTTTTTCCTTTATTCTT
Found at i:8204309 original size:7 final size:7
Alignment explanation
Indices: 8204258--8204312 Score: 51
Period size: 7 Copynumber: 7.9 Consensus size: 7
8204248 AGTCCTCCTT
8204258 TTTTATTC
1 TTTT-TTC
*
8204266 TTTATTC
1 TTTTTTC
*
8204273 TTTATTC
1 TTTTTTC
8204280 -TTTTTC
1 TTTTTTC
8204286 TTTCTTT-
1 TTT-TTTC
*
8204293 TTTTTCC
1 TTTTTTC
8204300 TTTTTTC
1 TTTTTTC
8204307 TTTTTT
1 TTTTTT
8204313 TTACCTTTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
6 7 0.17
7 27 0.68
8 6 0.15
ACGTcount: A:0.05, C:0.15, G:0.00, T:0.80
Consensus pattern (7 bp):
TTTTTTC
Found at i:8204313 original size:18 final size:17
Alignment explanation
Indices: 8204286--8204323 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
8204276 ATTCTTTTTC
*
8204286 TTTCTTTTTTTTCCTTT
1 TTTCTTTTTTTACCTTT
8204303 TTTCTTTTTTTTACCTTT
1 TTTC-TTTTTTTACCTTT
8204321 TTT
1 TTT
8204324 TTTAAGCATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTCTTTTTTTACCTTT
Found at i:8214779 original size:18 final size:19
Alignment explanation
Indices: 8214756--8214791 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8214746 TAAAGCATTT
*
8214756 GGAAATT-TTATTTTCAAA
1 GGAAATTGTTACTTTCAAA
8214774 GGAAATTGTTACTTTCAA
1 GGAAATTGTTACTTTCAA
8214792 CTTTCCCTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.36, C:0.08, G:0.14, T:0.42
Consensus pattern (19 bp):
GGAAATTGTTACTTTCAAA
Found at i:8214834 original size:54 final size:55
Alignment explanation
Indices: 8214717--8214849 Score: 146
Period size: 54 Copynumber: 2.5 Consensus size: 55
8214707 GTTTTTATAT
* * *
8214717 AAGGAAAATTGATACTTTCAACTTTTCCTTAAAGCATTTGGAAATTTTATTTTCA
1 AAGGAAAATTGATACTTTCAACTTTCCCTAAAAGCATTTAGAAATTTTATTTTCA
* ** *
8214772 AAGG-AAATTGTTACTTTCAACTTTCCCTAAAATGTTTTTAGAAGTTTTA-TTTC-
1 AAGGAAAATTGATACTTTCAACTTTCCCTAAAA-GCATTTAGAAATTTTATTTTCA
* * *
8214825 GAGGAAAATTGATGCTTTTAACTTT
1 AAGGAAAATTGATACTTTCAACTTT
8214850 TTTTCAAAAA
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
53 3 0.05
54 46 0.71
55 16 0.25
ACGTcount: A:0.32, C:0.12, G:0.13, T:0.43
Consensus pattern (55 bp):
AAGGAAAATTGATACTTTCAACTTTCCCTAAAAGCATTTAGAAATTTTATTTTCA
Found at i:8214867 original size:15 final size:15
Alignment explanation
Indices: 8214847--8214894 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
8214837 TGCTTTTAAC
* *
8214847 TTTTTTTCAAAAATA
1 TTTTTTTAAAAAAAA
8214862 TTTTTTTAAAAAAAA
1 TTTTTTTAAAAAAAA
*
8214877 TTATTTTTAAGAAAAA
1 TT-TTTTTAAAAAAAA
8214893 TT
1 TT
8214895 GATACTTTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
15 15 0.52
16 14 0.48
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (15 bp):
TTTTTTTAAAAAAAA
Found at i:8214894 original size:16 final size:16
Alignment explanation
Indices: 8214849--8214894 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
8214839 CTTTTAACTT
* *
8214849 TTTTTCAAAAATATT-
1 TTTTTAAAAAAAATTA
8214864 TTTTTAAAAAAAATTA
1 TTTTTAAAAAAAATTA
*
8214880 TTTTTAAGAAAAATT
1 TTTTTAAAAAAAATT
8214895 GATACTTTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 13 0.48
16 14 0.52
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (16 bp):
TTTTTAAAAAAAATTA
Found at i:8214977 original size:15 final size:16
Alignment explanation
Indices: 8214959--8214988 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8214949 AAATCATTTT
8214959 AAAAAATAA-AAATAA
1 AAAAAATAAGAAATAA
8214974 AAAAAATAAGAAATA
1 AAAAAATAAGAAATA
8214989 CTAAATAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.13
Consensus pattern (16 bp):
AAAAAATAAGAAATAA
Found at i:8215839 original size:20 final size:20
Alignment explanation
Indices: 8215794--8215869 Score: 56
Period size: 20 Copynumber: 4.0 Consensus size: 20
8215784 CAGAACAGAT
8215794 AAATAAATAAATAAATAATAA
1 AAAT-AATAAATAAATAATAA
* *
8215815 TAATAATAGATAAAT-AT-A
1 AAATAATAAATAAATAATAA
*
8215833 AAA-AAT--ATACATTAATAGA
1 AAATAATAAATA-AATAATA-A
8215852 AAATAATAAA-AAATAATA
1 AAATAATAAATAAATAATA
8215870 TTAATGGATA
Statistics
Matches: 43, Mismatches: 5, Indels: 15
0.68 0.08 0.24
Matches are distributed among these distances:
15 3 0.07
16 2 0.05
17 5 0.12
18 3 0.07
19 6 0.14
20 19 0.44
21 4 0.09
22 1 0.02
ACGTcount: A:0.70, C:0.01, G:0.03, T:0.26
Consensus pattern (20 bp):
AAATAATAAATAAATAATAA
Done.