Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15507587
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 54 of 91
Found at i:8835522 original size:22 final size:23
Alignment explanation
Indices: 8835475--8835531 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 23
8835465 TCACTAATTT
** *
8835475 ACTACTAAATT-TTCATTGATTT
1 ACTACTAAATTATAAATTGATTA
8835497 ACTACTAAATTATAAATT-ATTA
1 ACTACTAAATTATAAATTGATTA
*
8835519 ACTATTAAATTAT
1 ACTACTAAATTAT
8835532 CTTTTTTATG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 26 0.87
23 4 0.13
ACGTcount: A:0.42, C:0.11, G:0.02, T:0.46
Consensus pattern (23 bp):
ACTACTAAATTATAAATTGATTA
Found at i:8836188 original size:22 final size:22
Alignment explanation
Indices: 8836148--8836475 Score: 132
Period size: 22 Copynumber: 15.2 Consensus size: 22
8836138 ACCAAATCTT
8836148 ATTTACTATTAA-TTATCATTA
1 ATTTACTATTAAGTTATCATTA
*
8836169 ATTTACTATTAAGTTATCATTG
1 ATTTACTATTAAGTTATCATTA
* * *
8836191 ATTTATTACTAAGTTATCAATA
1 ATTTACTATTAAGTTATCATTA
* ** *
8836213 ATTAACTGCTAAGCTATCACTT-
1 ATTTACTATTAAGTTATCA-TTA
** *
8836235 ATTTTTTATTAAGTTATCCTTA
1 ATTTACTATTAAGTTATCATTA
* *
8836257 ATTTACTAATATGTGT-T-A-TA
1 ATTTACTATTAAGT-TATCATTA
* * * * *
8836277 TATTTACAATTATG-TATAAATG
1 -ATTTACTATTAAGTTATCATTA
* * *
8836299 ATTTACTGTTAAGTTAT-TTGTT
1 ATTTACTATTAAGTTATCAT-TA
* * *
8836321 ATTT-CTTACTATGTTATTATGT-
1 ATTTAC-TATTAAGTTATCAT-TA
* *
8836343 ATTTATTATTATGTTATCATATA
1 ATTTACTATTAAGTTATCAT-TA
*
8836366 TTATTT--TATCAA-TTAT--TT-
1 --ATTTACTATTAAGTTATCATTA
*
8836384 ATTTACTATTAAGTTATTATTA
1 ATTTACTATTAAGTTATCATTA
*
8836406 TTTTACTATTAAGTTATTCA-TA
1 ATTTACTATTAAGTTA-TCATTA
*
8836428 ATTTACTA-TATAGTTATTATTA
1 ATTTACTATTA-AGTTATCATTA
* * * *
8836450 ATTTAGTATAAAGTTATTATTT
1 ATTTACTATTAAGTTATCATTA
8836472 ATTT
1 ATTT
8836476 TGTCTAAATT
Statistics
Matches: 232, Mismatches: 49, Indels: 51
0.70 0.15 0.15
Matches are distributed among these distances:
16 4 0.02
18 5 0.02
19 6 0.03
20 4 0.02
21 43 0.19
22 154 0.66
23 12 0.05
25 4 0.02
ACGTcount: A:0.33, C:0.07, G:0.06, T:0.53
Consensus pattern (22 bp):
ATTTACTATTAAGTTATCATTA
Found at i:8836359 original size:11 final size:11
Alignment explanation
Indices: 8836330--8836449 Score: 56
Period size: 11 Copynumber: 11.2 Consensus size: 11
8836320 TATTTCTTAC
8836330 TATGTTATTAT
1 TATGTTATTAT
8836341 GTAT-TTATTAT
1 -TATGTTATTAT
*
8836352 TATGTTATCA-
1 TATGTTATTAT
*
8836362 TATATTATT-T
1 TATGTTATTAT
**
8836372 TAT-CAATTATT
1 TATGTTATTA-T
*
8836383 TAT-TTACTAT
1 TATGTTATTAT
*
8836393 TAAGTTATTAT
1 TATGTTATTAT
* *
8836404 TATTTTACTAT
1 TATGTTATTAT
*
8836415 TAAGTTATTCAT
1 TATGTTATT-AT
* *
8836427 AAT-TTACTA-
1 TATGTTATTAT
8836436 TATAGTTATTAT
1 TAT-GTTATTAT
8836448 TA
1 TA
8836450 ATTTAGTATA
Statistics
Matches: 78, Mismatches: 21, Indels: 18
0.67 0.18 0.15
Matches are distributed among these distances:
9 5 0.06
10 17 0.22
11 48 0.62
12 8 0.10
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.57
Consensus pattern (11 bp):
TATGTTATTAT
Found at i:8836483 original size:22 final size:22
Alignment explanation
Indices: 8836377--8836497 Score: 102
Period size: 22 Copynumber: 5.5 Consensus size: 22
8836367 TATTTTATCA
* * *
8836377 ATTATTTATTTACTATTAAGTT
1 ATTATTAATTTAGTATAAAGTT
* * *
8836399 ATTATTATTTTACTATTAAGTT
1 ATTATTAATTTAGTATAAAGTT
* *
8836421 ATTCA-TAATTTACTATATAGTT
1 ATT-ATTAATTTAGTATAAAGTT
8836443 ATTATTAATTTAGTATAAAGTT
1 ATTATTAATTTAGTATAAAGTT
* * *
8836465 ATTATTTATTTTGTCTAAA-TT
1 ATTATTAATTTAGTATAAAGTT
* *
8836486 ATCACTAATTTA
1 ATTATTAATTTA
8836498 TAACAAAATT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
21 11 0.13
22 71 0.86
23 1 0.01
ACGTcount: A:0.35, C:0.06, G:0.05, T:0.55
Consensus pattern (22 bp):
ATTATTAATTTAGTATAAAGTT
Found at i:8836553 original size:22 final size:22
Alignment explanation
Indices: 8836377--8836553 Score: 86
Period size: 22 Copynumber: 8.1 Consensus size: 22
8836367 TATTTTATCA
* *
8836377 ATTATTTATTTACTATTAAGTT
1 ATTATATATTTACTACTAAGTT
*
8836399 ATTAT-TATTTTACTATTAAGTT
1 ATTATATA-TTTACTACTAAGTT
8836421 ATTCATA-ATTTACTA-TATAGTT
1 ATT-ATATATTTACTACTA-AGTT
*
8836443 ATTAT-TAATTTAGTA-TAAAGTT
1 ATTATAT-ATTTACTACT-AAGTT
* ** *
8836465 ATTATTTATTTTGT-CTAAATT
1 ATTATATATTTACTACTAAGTT
* * *
8836486 ATCACTA-ATTTA-TAACAAAATT
1 ATTA-TATATTTACT-ACTAAGTT
* *
8836508 ATCA-ATAATTTGCTACTATA-TT
1 ATTATAT-ATTTACTACTA-AGTT
8836530 ATTATATATTTACTACTAAGTT
1 ATTATATATTTACTACTAAGTT
8836552 AT
1 AT
8836554 AATTGATTTA
Statistics
Matches: 126, Mismatches: 11, Indels: 36
0.73 0.06 0.21
Matches are distributed among these distances:
20 2 0.02
21 18 0.14
22 97 0.77
23 9 0.07
ACGTcount: A:0.37, C:0.07, G:0.05, T:0.51
Consensus pattern (22 bp):
ATTATATATTTACTACTAAGTT
Found at i:8839555 original size:872 final size:863
Alignment explanation
Indices: 8838087--8839820 Score: 2970
Period size: 872 Copynumber: 2.0 Consensus size: 863
8838077 AAGGATTGAA
*
8838087 TGAAATTAACTTGGATGTAATATAGAATCAATCTATAGAAGACAAAATAAAATCTAAATTTAATA
1 TGAAATTAACTTGGATGTAATATAGAATCAATCTACAGAAGACAAAATAAAATCTAAATTTAATA
*
8838152 ACAATTCACATATACGAAAGATTATGTTTATAAAGCAAAGATTCAATTAGGCATTGAACATTAAA
66 ACAATTCACATATACGAAAGATTATGTTCATAAAGCAAAGATTCAATTAGGCATTGAACATTAAA
8838217 ACATGATTGCATAAAGTAATTAGAAATATTATAATAAAATAAATCAACCATTGCAATCATTAAAC
131 ACATGATTGCATAAAGTAATTAGAAATATTATAATAAAATAAATCAACCATTGCAATCATTAAAC
*
8838282 ATATAAATGTATATTTATCGTAAAAAAAAATAAATAAACATACAAACTTACCACAACACATGTAT
196 ATATAAATGTATATTTATCATAAAAAAAAATAAATAAACATACAAACTTACCACAACACATGTAT
* *
8838347 TACTCTTTCTTAATAATTTTTTGATAATTTAATTACTAATTTTGTATGAACTTTAATTTTAATTA
261 TACTCTTTCTCAATAATTTTTTGATAATTTAATTAATAATTTTGTATGAACTTTAATTTTAATTA
* * * *
8838412 ATCTAAATTAAATAAATCAAAATATAAATATATTTAAGGACTCATGATATGTATTATTAAAGAAG
326 ATCTAAATTAAATAAATAAAAATATAAATATATTTAAGGACTCATGACATGTACTATTAAAAAAG
*
8838477 ATAAAGAGTAAATTAGGTTGTATCTTGAAAAAGAAAAATTATATGTTTTACTTAAGACAAAATTA
391 ATAAAGAGTAAATTAGGTTGTATCTTAAAAAAGAAAAATTATATGTTTTACTTAAGACAAAATTA
*
8838542 AATGTGTTTGGGACATAAACATTATAATATAATAATTTAGACTAAAATAATGACTAATTGAGCAA
456 AATATGTTTGGGACATAAACATTATAATATAATAATTTAGACTAAAATAATGACTAATTGAGCAA
* *
8838607 AAGAGGAAAGATTTTGTCTATGCTTTGTTTAATATCATGGACTCATAGTATGTTATAGCTCATAG
521 AAGAGAAAAGATTTTGTCTATGCTTTGTTTAATACCATGGACTCATAGTATGTTATAGCTCATAG
*
8838672 GATGATAAATGTGTTTTATATGAATTTAATTGAATTATTGCTTATGAAATTGAACAAAAAAGAAT
586 GATGATAAATGTATTTTATATGAATTTAATTGAATTATTGCTTATGAAATTGAACAAAAAAGAAT
*
8838737 CCTA-TAAAAAAAAGTAAATTTGGATTAATTTTCGACAATACATCCACCATATCCAACAAATAAA
651 CCTACAAAAAAAAAGTAAATTTGGATTAATTTTCGACAATACATCCACCATATCCAACAAATAAA
* *
8838801 TTTTTAATGTAGTTTTATTTTGATATAAATTCTATTCATTAATTTTTAATTGATTTAAATTTAAA
716 TTTTTAATGTAGTTTAATTTT-ATATAAATTCTATTCATAAATTTTTAATTGATTTAAATTTAAA
*
8838866 TAACTAACAAATAAAAAGCTATATATTTAATGGCAAATAATCTTTATTAAATAAATAAATAAATG
780 TAACTAACAAATAAAAACCTATATATTTAATGGCAAATAATCTTTATTAAATAAATAAATAAATG
8838931 CTAGAAATTTAAAGGTAAC
845 CTAGAAATTTAAAGGTAAC
* * * *
8838950 TGAAATTAACTTGGATGTAATATGGAATCAATCTGCAGAAGACAAAATAAAATCTAAGTTTAGTA
1 TGAAATTAACTTGGATGTAATATAGAATCAATCTACAGAAGACAAAATAAAATCTAAATTTAATA
* *
8839015 ACAATTCACATATAC-AGAAGATTATGTTCATAAAGCAAAGATTCATTTAGGCATTATAACATTA
66 ACAATTCACATATACGA-AAGATTATGTTCATAAAGCAAAGATTCAATTAGGCATT-GAACATTA
* * *
8839079 AAACGTGATTGCATAAAGTGATTAGAAATATTATAATAAAATAAATCAAGCATTGCAATCATTAA
129 AAACATGATTGCATAAAGTAATTAGAAATATTATAATAAAATAAATCAACCATTGCAATCATTAA
8839144 ACATATAAATGTATATTTATCATAAAAAATAAATTAAAAAAATCAAACATACAAACTTACCACAA
194 ACATATAAATGTATATTTATCATAAAAAA-AAA-T----AAAT-AAACATACAAACTTACCACAA
* *
8839209 TATATGTATTACTCTTTCTCAATAATTTTTTGATAATTTAATTAATAATTTTGTATGAACTTTAA
252 CACATGTATTACTCTTTCTCAATAATTTTTTGATAATTTAATTAATAATTTTGTATGAACTTTAA
*
8839274 TTTTAATTGATCTAAATTAAATAAATAAAAAATATAAATATATTTAAGGACTCATGACATGTACT
317 TTTTAATTAATCTAAATTAAATAAAT-AAAAATATAAATATATTTAAGGACTCATGACATGTACT
8839339 ATTAAAAAAGATAAAGAGTAAATTAGGTTGTATCTTAAAAAAGAAAAATTATATGTTTTACTTAA
381 ATTAAAAAAGATAAAGAGTAAATTAGGTTGTATCTTAAAAAAGAAAAATTATATGTTTTACTTAA
* * *
8839404 GATAAAATTAAATATTTTTGGGACATAAACGTTATAATATAATAATTTAGACTAAAATAATGACT
446 GACAAAATTAAATATGTTTGGGACATAAACATTATAATATAATAATTTAGACTAAAATAATGACT
*
8839469 AATTGAGCAACAA-AGAAAAGATTTTGTCTATGTTTTGTTTAATACCATGGACTCATAGTATGTT
511 AATTGAGCAA-AAGAGAAAAGATTTTGTCTATGCTTTGTTTAATACCATGGACTCATAGTATGTT
8839533 ATAGCTCATAGGATGATAAATGTATTTTATATGAATTTAATTGAATTATTGCTTATGAAATTGAA
575 ATAGCTCATAGGATGATAAATGTATTTTATATGAATTTAATTGAATTATTGCTTATGAAATTGAA
* * *
8839598 CAAAAAGGAATCCTACAAAAAAAAAGTAAATTTGGGTTAATTTTCGACAATACATCCACTATATC
640 CAAAAAAGAATCCTACAAAAAAAAAGTAAATTTGGATTAATTTTCGACAATACATCCACCATATC
* *
8839663 CCACAAATAAATTTTTAATGTAGTTTAATTTTATATAAATTTTATTCATAAATTTTTAATTGATT
705 CAACAAATAAATTTTTAATGTAGTTTAATTTTATATAAATTCTATTCATAAATTTTTAATTGATT
* *
8839728 TAAATTTAAATAACTAACAAATAAAAACCTATATGTTTAATGGCAAATAATCTTTATTAAGTAAA
770 TAAATTTAAATAACTAACAAATAAAAACCTATATATTTAATGGCAAATAATCTTTATTAAATAAA
8839793 TAAATAAATGCTAGAAATTTAAAGGTAA
835 TAAATAAATGCTAGAAATTTAAAGGTAA
8839821 ATTTGTTATT
Statistics
Matches: 818, Mismatches: 41, Indels: 15
0.94 0.05 0.02
Matches are distributed among these distances:
862 1 0.00
863 111 0.14
864 97 0.12
865 3 0.00
866 1 0.00
870 4 0.00
871 107 0.13
872 416 0.51
873 78 0.10
ACGTcount: A:0.45, C:0.09, G:0.10, T:0.36
Consensus pattern (863 bp):
TGAAATTAACTTGGATGTAATATAGAATCAATCTACAGAAGACAAAATAAAATCTAAATTTAATA
ACAATTCACATATACGAAAGATTATGTTCATAAAGCAAAGATTCAATTAGGCATTGAACATTAAA
ACATGATTGCATAAAGTAATTAGAAATATTATAATAAAATAAATCAACCATTGCAATCATTAAAC
ATATAAATGTATATTTATCATAAAAAAAAATAAATAAACATACAAACTTACCACAACACATGTAT
TACTCTTTCTCAATAATTTTTTGATAATTTAATTAATAATTTTGTATGAACTTTAATTTTAATTA
ATCTAAATTAAATAAATAAAAATATAAATATATTTAAGGACTCATGACATGTACTATTAAAAAAG
ATAAAGAGTAAATTAGGTTGTATCTTAAAAAAGAAAAATTATATGTTTTACTTAAGACAAAATTA
AATATGTTTGGGACATAAACATTATAATATAATAATTTAGACTAAAATAATGACTAATTGAGCAA
AAGAGAAAAGATTTTGTCTATGCTTTGTTTAATACCATGGACTCATAGTATGTTATAGCTCATAG
GATGATAAATGTATTTTATATGAATTTAATTGAATTATTGCTTATGAAATTGAACAAAAAAGAAT
CCTACAAAAAAAAAGTAAATTTGGATTAATTTTCGACAATACATCCACCATATCCAACAAATAAA
TTTTTAATGTAGTTTAATTTTATATAAATTCTATTCATAAATTTTTAATTGATTTAAATTTAAAT
AACTAACAAATAAAAACCTATATATTTAATGGCAAATAATCTTTATTAAATAAATAAATAAATGC
TAGAAATTTAAAGGTAAC
Found at i:8850750 original size:14 final size:14
Alignment explanation
Indices: 8850731--8850757 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8850721 AAAAAATTAA
8850731 ATATTTATATGAAT
1 ATATTTATATGAAT
8850745 ATATTTATATGAA
1 ATATTTATATGAA
8850758 CATAAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.48
Consensus pattern (14 bp):
ATATTTATATGAAT
Found at i:8851827 original size:13 final size:12
Alignment explanation
Indices: 8851798--8851832 Score: 54
Period size: 11 Copynumber: 2.9 Consensus size: 12
8851788 AAATTTTAAA
8851798 TATATTAAAA-T
1 TATATTAAAATT
8851809 TATATTAAAATT
1 TATATTAAAATT
8851821 TACTATTAAAAT
1 TA-TATTAAAAT
8851833 CAATTCATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 10 0.45
12 3 0.14
13 9 0.41
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (12 bp):
TATATTAAAATT
Found at i:8852435 original size:15 final size:15
Alignment explanation
Indices: 8852415--8852446 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8852405 TTGGTTTGGT
8852415 TTGAATTATTGTAAA
1 TTGAATTATTGTAAA
*
8852430 TTGAATTATTTTAAA
1 TTGAATTATTGTAAA
8852445 TT
1 TT
8852447 AAAAATTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (15 bp):
TTGAATTATTGTAAA
Found at i:8852910 original size:13 final size:14
Alignment explanation
Indices: 8852894--8852926 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
8852884 TATTGGCCAA
8852894 TTTTAATATTT-AT
1 TTTTAATATTTAAT
*
8852907 TTTTAATTTTTAAT
1 TTTTAATATTTAAT
8852921 TTTTAA
1 TTTTAA
8852927 GTTATAACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTTAATATTTAAT
Found at i:8852917 original size:8 final size:7
Alignment explanation
Indices: 8852894--8852926 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
8852884 TATTGGCCAA
8852894 TTTTAAT
1 TTTTAAT
*
8852901 ATTT-AT
1 TTTTAAT
8852907 TTTTAAT
1 TTTTAAT
8852914 TTTTAAT
1 TTTTAAT
8852921 TTTTAA
1 TTTTAA
8852927 GTTATAACAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
6 5 0.22
7 18 0.78
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (7 bp):
TTTTAAT
Found at i:8853461 original size:15 final size:15
Alignment explanation
Indices: 8853433--8853488 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
8853423 TTTGAGTTTG
* *
8853433 AATTCGAATAAAATT
1 AATTCAAATTAAATT
8853448 AATTCAAATTAAATT
1 AATTCAAATTAAATT
* * *
8853463 AATTTAAATTTGAATC
1 AATTCAAA-TTAAATT
8853479 AATTCAAATT
1 AATTCAAATT
8853489 TTGATCAAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
15 22 0.65
16 12 0.35
ACGTcount: A:0.50, C:0.07, G:0.04, T:0.39
Consensus pattern (15 bp):
AATTCAAATTAAATT
Found at i:8853487 original size:16 final size:16
Alignment explanation
Indices: 8853443--8853489 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 16
8853433 AATTCGAATA
*
8853443 AAATTAATTCAAA-TT
1 AAATCAATTCAAATTT
* *
8853458 AAATTAATTTAAATTT
1 AAATCAATTCAAATTT
*
8853474 GAATCAATTCAAATTT
1 AAATCAATTCAAATTT
8853490 TGATCAAATC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
15 12 0.44
16 15 0.56
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (16 bp):
AAATCAATTCAAATTT
Found at i:8854230 original size:21 final size:20
Alignment explanation
Indices: 8854205--8854243 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8854195 ACATAATTTA
8854205 TATCATAAAAATAGATTTAAC
1 TATCA-AAAAATAGATTTAAC
* *
8854226 TATCAATAAATATATTTA
1 TATCAAAAAATAGATTTA
8854244 TTATTTTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.51, C:0.08, G:0.03, T:0.38
Consensus pattern (20 bp):
TATCAAAAAATAGATTTAAC
Found at i:8854263 original size:17 final size:18
Alignment explanation
Indices: 8854234--8854274 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
8854224 ACTATCAATA
8854234 AATATATTTATTAT-TTT
1 AATATATTTATTATATTT
8854251 AATA-ATTTAATTATATTT
1 AATATATTT-ATTATATTT
*
8854269 ATTATA
1 AATATA
8854275 AAATAAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
16 4 0.20
17 9 0.45
18 6 0.30
19 1 0.05
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
AATATATTTATTATATTT
Found at i:8854625 original size:31 final size:31
Alignment explanation
Indices: 8854590--8854648 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
8854580 ATGTCTAAGT
* *
8854590 TACAAAAATATAATTTTACCTTTTAGTTTAC
1 TACAAAAATACAATTTTACCTTTCAGTTTAC
* *
8854621 TACAAAAATACCATTTTATCTTTCAGTT
1 TACAAAAATACAATTTTACCTTTCAGTT
8854649 AAAAAAATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.37, C:0.15, G:0.03, T:0.44
Consensus pattern (31 bp):
TACAAAAATACAATTTTACCTTTCAGTTTAC
Found at i:8855377 original size:39 final size:39
Alignment explanation
Indices: 8855323--8855402 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
8855313 TTGTGTCGAA
8855323 TGCCTTTTAGATACAATGAAACCTATGTTTGATTTATCT
1 TGCCTTTTAGATACAATGAAACCTATGTTTGATTTATCT
*
8855362 TGCCTTTTAGATACAATGAAACTTATGTTTGATTTATCT
1 TGCCTTTTAGATACAATGAAACCTATGTTTGATTTATCT
8855401 TG
1 TG
8855403 TATTAGAAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.45
Consensus pattern (39 bp):
TGCCTTTTAGATACAATGAAACCTATGTTTGATTTATCT
Found at i:8861496 original size:18 final size:19
Alignment explanation
Indices: 8861475--8861513 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
8861465 AATTGAAGGT
8861475 ATTT-ATAAAAA-AGAAAAA
1 ATTTAATAAAAACA-AAAAA
8861493 ATTTAATAAAAACAAAAAA
1 ATTTAATAAAAACAAAAAA
8861512 AT
1 AT
8861514 AACGAGTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.21
19 14 0.74
20 1 0.05
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.23
Consensus pattern (19 bp):
ATTTAATAAAAACAAAAAA
Found at i:8864569 original size:20 final size:20
Alignment explanation
Indices: 8864546--8864608 Score: 51
Period size: 20 Copynumber: 3.1 Consensus size: 20
8864536 TTTTTTAGAT
8864546 AAAAAATATAATTTTTATTA
1 AAAAAATATAATTTTTATTA
*
8864566 AAAAGATGAT-ATTTTTA--A
1 AAAAAAT-ATAATTTTTATTA
* *
8864584 AATAAAATTGTAATTTTTGTTA
1 AA-AAAA-TATAATTTTTATTA
8864606 AAA
1 AAA
8864609 TTTTGAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 11
0.69 0.08 0.23
Matches are distributed among these distances:
18 3 0.09
19 4 0.12
20 20 0.61
21 3 0.09
22 3 0.09
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (20 bp):
AAAAAATATAATTTTTATTA
Found at i:8864631 original size:114 final size:113
Alignment explanation
Indices: 8864474--8864955 Score: 324
Period size: 113 Copynumber: 4.3 Consensus size: 113
8864464 TTTGTAAGAC
* * * * *
8864474 AAAAACGTAATTTTTGTTGATAA-TATAAAAAAACTAT-TGTTTAAAATTCAACAAAAACGATAT
1 AAAAATGTAATTTTTGTTGAAAATTATGAAAAAATTATAT-TTTAAAATTCAACAAAAACAATAT
* * *
8864537 TTTTTAGATAAAAAATATAATTTTTATTAAAAAGATGATATTTTTAAAAT
65 TTTTAAGATAAAAAATATAATATTTATTAAAAA-ACGATATTTTTAAAAT
* * * * *** *
8864587 AAAATTGTAATTTTTGTT-AAAATTTTGAAAAAAATTATATTTTAAAATTTAAGAAAGGTAATGT
1 AAAAATGTAATTTTTGTTGAAAATTATG-AAAAAATTATATTTTAAAATTCAACAAAAACAAT-A
** * *
8864651 TTTTTAA-ATAAAAAACCTAATATTTATTGAAAAAACGACATTTTAAAAAT
64 TTTTTAAGATAAAAAATATAATATTTATT-AAAAAACGATATTTTTAAAAT
* * * * * * * * ***
8864701 AAAAATATGATTTCTATTGAAAA-TACGAAAAAATTATTTTTTAAAATTTAACCAAAACAACGGT
1 AAAAATGTAATTTTTGTTGAAAATTATGAAAAAATTATATTTTAAAATTCAACAAAAACAATATT
* * * * ** * **
8864765 TTTAAGAT-AGAAATGTAGTATTTTTTGAAAAATTGAATTTTTTTAGGAT
66 TTTAAGATAAAAAATATAATATTTATT-AAAAAACG-ATATTTTTAAAAT
* * * ** *
8864814 AAAAATGTAA-TCTTGATT-AAAAATATGAAAAGA--A-A-TTTCGAATTCAACAAAAATAATAT
1 AAAAATGTAATTTTTG-TTGAAAATTATGAAAAAATTATATTTTAAAATTCAACAAAAACAATAT
** * *
8864873 TTTTAAGATAAAAAATATAGCATTTATTGAAAAGACGATACTTTTAAAAT
65 TTTTAAGATAAAAAATATAATATTTATT-AAAAAACGATATTTTTAAAAT
* *
8864923 AAAATTGTAATTTTTGTTGAAAA-TATAAAAAAA
1 AAAAATGTAATTTTTGTTGAAAATTATGAAAAAA
8864956 AAAATGTAAA
Statistics
Matches: 277, Mismatches: 79, Indels: 30
0.72 0.20 0.08
Matches are distributed among these distances:
109 53 0.19
110 28 0.10
111 1 0.00
112 35 0.13
113 73 0.26
114 71 0.26
115 16 0.06
ACGTcount: A:0.49, C:0.05, G:0.09, T:0.37
Consensus pattern (113 bp):
AAAAATGTAATTTTTGTTGAAAATTATGAAAAAATTATATTTTAAAATTCAACAAAAACAATATT
TTTAAGATAAAAAATATAATATTTATTAAAAAACGATATTTTTAAAAT
Found at i:8880236 original size:3 final size:3
Alignment explanation
Indices: 8880213--8880258 Score: 67
Period size: 3 Copynumber: 15.3 Consensus size: 3
8880203 CCGATTAGGA
*
8880213 AAT AA- AAT AAA AAT AAAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8880258 A
1 A
8880259 TACAATATAC
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
2 2 0.05
3 34 0.87
4 3 0.08
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:8880525 original size:25 final size:25
Alignment explanation
Indices: 8880495--8880542 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
8880485 AGCGACTAGG
8880495 ACCAAGTCGAGGTTGAAAATAAAGA
1 ACCAAGTCGAGGTTGAAAATAAAGA
8880520 ACCAAGTCGAGGTTGAAAATAAA
1 ACCAAGTCGAGGTTGAAAATAAA
8880543 TGATCGAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.48, C:0.12, G:0.23, T:0.17
Consensus pattern (25 bp):
ACCAAGTCGAGGTTGAAAATAAAGA
Found at i:8881204 original size:84 final size:85
Alignment explanation
Indices: 8880952--8881205 Score: 298
Period size: 84 Copynumber: 3.0 Consensus size: 85
8880942 AAAAGTTTTA
* * *
8880952 AGATTCGCAAAGGTCTCAGGTTCACAAAGGACTTTTAGATTCGCAGGAAAGAAAAATTTACG-AA
1 AGATTCGCAAAGATTTCAGGTTCACAAA-GACTTTTAGATTCACAGGAAAGAAAAA-TT-CGCAA
*
8881016 -ATTTCAAGTTTTGCAAAGGTTCT
63 GATTTCAAGTTTCGCAAAGG-TCT
* * * *
8881039 AGATTTGCAAAGATTTCAAGTTCGCAAAGACTTTTAGATTCACAGGAAAGAAAGATTCGCAAGAT
1 AGATTCGCAAAGATTTCAGGTTCACAAAGACTTTTAGATTCACAGGAAAGAAAAATTCGCAAGAT
* *
8881104 TTCAAATTTCACAAAGGT-T
66 TTCAAGTTTCGCAAAGGTCT
* * * * * *
8881123 AGATTCACAAAGATTTCAGGTTCACAAAGACTTTCAAATTTACAAGAAAGAAATATTCGCAAGAT
1 AGATTCGCAAAGATTTCAGGTTCACAAAGACTTTTAGATTCACAGGAAAGAAAAATTCGCAAGAT
*
8881188 TTCAAGTTTCGTAAAGGT
66 TTCAAGTTTCGCAAAGGT
8881206 GCAAGGTTCG
Statistics
Matches: 143, Mismatches: 22, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
84 74 0.52
85 5 0.03
86 41 0.29
87 23 0.16
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.29
Consensus pattern (85 bp):
AGATTCGCAAAGATTTCAGGTTCACAAAGACTTTTAGATTCACAGGAAAGAAAAATTCGCAAGAT
TTCAAGTTTCGCAAAGGTCT
Found at i:8881352 original size:21 final size:21
Alignment explanation
Indices: 8881328--8881368 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
8881318 ACAAGATTTC
8881328 AAGTTTCACAAAAGGTTCTAA
1 AAGTTTCACAAAAGGTTCTAA
8881349 AAGTTTCACAAAAGGTTCTA
1 AAGTTTCACAAAAGGTTCTA
8881369 GATTTGCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.29
Consensus pattern (21 bp):
AAGTTTCACAAAAGGTTCTAA
Found at i:8882486 original size:11 final size:10
Alignment explanation
Indices: 8882466--8882540 Score: 62
Period size: 10 Copynumber: 7.3 Consensus size: 10
8882456 AGTTTGAGTC
8882466 TTTCTTTTTT
1 TTTCTTTTTT
*
8882476 TCTC-TTTTT
1 TTTCTTTTTT
*
8882485 TTCCTTTTTT
1 TTTCTTTTTT
* *
8882495 TTTCTTCTTG
1 TTTCTTTTTT
*
8882505 CTTCTTTTTTT
1 TTTC-TTTTTT
*
8882516 TTTTTTTGTTT
1 TTTCTTT-TTT
8882527 TGTTCTTTTTT
1 T-TTCTTTTTT
8882538 TTT
1 TTT
8882541 TACACATTTT
Statistics
Matches: 49, Mismatches: 12, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
9 7 0.14
10 23 0.47
11 14 0.29
12 5 0.10
ACGTcount: A:0.00, C:0.13, G:0.04, T:0.83
Consensus pattern (10 bp):
TTTCTTTTTT
Found at i:8882495 original size:22 final size:22
Alignment explanation
Indices: 8882465--8882580 Score: 66
Period size: 22 Copynumber: 5.2 Consensus size: 22
8882455 TAGTTTGAGT
8882465 CTTTCTTTTTTTCTCTTTTTTTC
1 CTTT-TTTTTTTCTCTTTTTTTC
8882488 C-TTTTTTTTTCTTCTTGCTTCTTT-
1 CTTTTTTTTTTC-TCTT--TT-TTTC
* *
8882512 -TTTTTTTTTT-TGTTTTGTT-
1 CTTTTTTTTTTCTCTTTTTTTC
* *
8882531 CTTTTTTTTTTACACATTTTTTC
1 CTTTTTTTTTT-CTCTTTTTTTC
*
8882554 ATATTTTTTTATT-TC-TTTTTTC
1 CT-TTTTTTT-TTCTCTTTTTTTC
8882576 CTTTT
1 CTTTT
8882581 ATTCATCCAT
Statistics
Matches: 73, Mismatches: 9, Indels: 24
0.69 0.08 0.23
Matches are distributed among these distances:
19 2 0.03
20 12 0.16
21 11 0.15
22 22 0.30
23 3 0.04
24 18 0.25
25 5 0.07
ACGTcount: A:0.05, C:0.15, G:0.03, T:0.78
Consensus pattern (22 bp):
CTTTTTTTTTTCTCTTTTTTTC
Found at i:8882514 original size:30 final size:31
Alignment explanation
Indices: 8882475--8882533 Score: 77
Period size: 30 Copynumber: 1.9 Consensus size: 31
8882465 CTTTCTTTTT
8882475 TTCTCTTTTTTTCCTTTTT-TTTTCTTCTTGC
1 TTCTCTTTTTTT-CTTTTTGTTTTCTTCTTGC
* *
8882506 TTCT-TTTTTTTTTTTTTGTTTTGTTCTT
1 TTCTCTTTTTTTCTTTTTGTTTTCTTCTT
8882534 TTTTTTTTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 5 0.20
30 16 0.64
31 4 0.16
ACGTcount: A:0.00, C:0.15, G:0.05, T:0.80
Consensus pattern (31 bp):
TTCTCTTTTTTTCTTTTTGTTTTCTTCTTGC
Found at i:8889710 original size:437 final size:437
Alignment explanation
Indices: 8888597--8891647 Score: 5646
Period size: 437 Copynumber: 7.0 Consensus size: 437
8888587 TCCCCTGAAG
*
8888597 TAGCAGCAAGTCTACCACAACCATTCAAACAACCTAAAAAGACAATCTTTGTAAGGTACCTTGAA
1 TAGCAGCAAGTCTACTACAACCATTCAAACAACCTAAAAAGACAATCTTTGTAAGGTACCTTGAA
*
8888662 ATCCCTTGATGCAAATGATACAAGGATCTTAGGATGGTGTTTCAATACTAATAACTTGGCACCTA
66 ATCCCTTGATGCAAATGATACAAGGATCTTAGGATGGTGTTTCAATACTAATAACTTCGCACCTA
* *
8888727 TTAAAGATGGGTTCAGTTTTAGTATTCTTGCCTAGGTGAGAATGAAACTGTTTGTGGTAAGT-GC
131 TTAAAGATGTGTTCAGTTTTAATATTCTTGCCTAGGTGAGAATGAAACTGTTTGTGGTAAGTGGC
*
8888791 ATTGACAACTATGACCTTGAGACTTCTTAGATGCTCAGAGATTGCAG-ATTGGTGCAATGGGTTT
196 ATTGACAACTATGACCTTGAGACTTCTTAGATGCTCA-AGATTGCAGAATTGGTGCATTGGGTTT
* * * *
8888855 CTGCAACC-CGAACATGA-TACAATAAACCAAGCAAGATCATGTC-CCATGGCTACCGAATTTCA
260 ATGCAACCTTGAATATGATTACAATAAACCAAGCAAGATCATGTCTCCATGGCTACTGAATTTCA
8888917 ACAAATAGAGTTGATGTCAAGCATAAATATTTGCAGAAATTTTCATTAAATAAACTTTGAAGTGC
325 ACAAATAGAGTTGATGTCAAGCATAAATATTTGCAGAAA-TTTCATTAAATAAACTTTGAAGTGC
8888982 TATTGACAACTACGGTTGGAGTTTGTGGTGGCTTTTGAGATTTGAATGCA
389 TATTGACAACTACGGTTGGAGTTTGT-GTGGCTTTTGAGATTTGAATGCA
8889032 TAGCAGCAAGTCTACTACAACCATTCAAACAACCTAAAAAGACAATCTTTGTAAGGTACCTTGAA
1 TAGCAGCAAGTCTACTACAACCATTCAAACAACCTAAAAAGACAATCTTTGTAAGGTACCTTGAA
8889097 ATCCCTTGATGCAAATGATACAAGGATCTTAGGATGGTGTTTCAATACTAATAACTTCGCACCTA
66 ATCCCTTGATGCAAATGATACAAGGATCTTAGGATGGTGTTTCAATACTAATAACTTCGCACCTA
* *
8889162 TTAAAGATGTG--C----TCAATATTCTTGCCTAGGTGAGAATGAAACTGTTTGTGGCAAGTGGC
131 TTAAAGATGTGTTCAGTTTTAATATTCTTGCCTAGGTGAGAATGAAACTGTTTGTGGTAAGTGGC
**
8889221 ATTGACAACTATGACCTTGAGACTTCTTAGATGCTCAAGACAGCAGAATTGGTGCATTGGGTTTA
196 ATTGACAACTATGACCTTGAGACTTCTTAGATGCTCAAGATTGCAGAATTGGTGCATTGGGTTTA
* * *
8889286 TGCAACCTTGAATATGATTACAATAAACCAAGCAAGATCAAGACTCCATGGCTAACGGAATTTCA
261 TGCAACCTTGAATATGATTACAATAAACCAAGCAAGATCATGTCTCCATGGCT-ACTGAATTTCA
*
8889351 ACAAATAGAGTTGATGTCAAGTATAAATATTTGCAGAAATTTCATTAAATAAACTTTGAAGTGCT
325 ACAAATAGAGTTGATGTCAAGCATAAATATTTGCAGAAATTTCATTAAATAAACTTTGAAGTGCT
*
8889416 ATTGACAACCACGGTTGGAGTTTGTGTGGCTTTTGAGATTTGAATGCA
390 ATTGACAACTACGGTTGGAGTTTGTGTGGCTTTTGAGATTTGAATGCA
*
8889464 TAGCAGCAAGTCTACCACAACCATTCAAACAACCTAAAAAGACAAT-TTTGTAAGGTACCTTGAA
1 TAGCAGCAAGTCTACTACAACCATTCAAACAACCTAAAAAGACAATCTTTGTAAGGTACCTTGAA
8889528 ATCCCTTGATGCAAATGATACAAGGATCTTAGGATGGTGTTTCAATACTAATAACTTCGCACCTA
66 ATCCCTTGATGCAAATGATACAAGGATCTTAGGATGGTGTTTCAATACTAATAACTTCGCACCTA
*
8889593 TTAAAGATGTGTTCAGTTTTAATATTCTTGCCTAGATGAGAATGAAACTGTTTGTGGTAAGTGGC
131 TTAAAGATGTGTTCAGTTTTAATATTCTTGCCTAGGTGAGAATGAAACTGTTTGTGGTAAGTGGC
*
8889658 ATTGACAACTATGACCTTGAGACTTCTTAGATGCTCAAGATTGCAGAATTGGTGCATTGGGTTTC
196 ATTGACAACTATGACCTTGAGACTTCTTAGATGCTCAAGATTGCAGAATTGGTGCATTGGGTTTA
*
8889723 TGCAACCTCGAATATGATTACAATAAACCAAGCAAGATCATGTCTCCATGGCTACTGAATTTCAA
261 TGCAACCTTGAATATGATTACAATAAACCAAGCAAGATCATGTCTCCATGGCTACTGAATTTCAA
8889788 CAAATAGAGTTGATGTCAAGCATAAATATTTGCAGAAATTTCATTAAATAAACTTTGAAGTGCTA
326 CAAATAGAGTTGATGTCAAGCATAAATATTTGCAGAAATTTCATTAAATAAACTTTGAAGTGCTA
8889853 TTGACAACTACGGTTGGAGTTTGTGTGGCTTTTGAGATTTGAATGCA
391 TTGACAACTACGGTTGGAGTTTGTGTGGCTTTTGAGATTTGAATGCA
8889900 TAGCAGCAAGTCTACTACAACCATTCAAACAACCTAAAAAGACAATCTTTGTAAGGTACCTTGAA
1 TAGCAGCAAGTCTACTACAACCATTCAAACAACCTAAAAAGACAATCTTTGTAAGGTACCTTGAA
8889965 ATCCCTTGATGCAAATGATACAAGGATCTTAGGATGGTGTTTCAATACTAATAACTTCGCACCTA
66 ATCCCTTGATGCAAATGATACAAGGATCTTAGGATGGTGTTTCAATACTAATAACTTCGCACCTA
8890030 TTAAAGATGTGTTCAGTTTTAATATTCTTGCCTAGGTGAGAATGAAACTGTTTGTGGTAAGTGGC
131 TTAAAGATGTGTTCAGTTTTAATATTCTTGCCTAGGTGAGAATGAAACTGTTTGTGGTAAGTGGC
**
8890095 ATTGACAACTATGACCTTGAGACTTCTTAGATGCTCAAGACAGCAGAATTGGTGCATTGGGTTTA
196 ATTGACAACTATGACCTTGAGACTTCTTAGATGCTCAAGATTGCAGAATTGGTGCATTGGGTTTA
* *
8890160 TGCAACCTTGAATATGATTACAATAAACCGAGCAAGATCATGACTCCATGGCTACTGAATTTCAA
261 TGCAACCTTGAATATGATTACAATAAACCAAGCAAGATCATGTCTCCATGGCTACTGAATTTCAA
*
8890225 CAAATAGAGTTGATGTCAAGCATAAATATTTGCAGAAATTTCATTAAATAAACTTTGAAGTGCCA
326 CAAATAGAGTTGATGTCAAGCATAAATATTTGCAGAAATTTCATTAAATAAACTTTGAAGTGCTA
8890290 TTGACAACTACGGTTGGAGTTTGTGTGGCTTTTGAGATTTGAATGCA
391 TTGACAACTACGGTTGGAGTTTGTGTGGCTTTTGAGATTTGAATGCA
8890337 TAGCAGCAAGTCTACTACAACCATTCAAACAACCTAAAAAGACAATCTTTGTAAGGTACCTTGAA
1 TAGCAGCAAGTCTACTACAACCATTCAAACAACCTAAAAAGACAATCTTTGTAAGGTACCTTGAA
*
8890402 ATCCCTTGATGCAAATGATACAAGGATCTTAGGATGGTGTTTCAATACTAATAACTTCACACCTA
66 ATCCCTTGATGCAAATGATACAAGGATCTTAGGATGGTGTTTCAATACTAATAACTTCGCACCTA
8890467 TTAAAGATGTGTTCAGTTTTAATATTCTTGCCTAGGTGAGAATGAAACTGTTTGTGGTAAGTGGC
131 TTAAAGATGTGTTCAGTTTTAATATTCTTGCCTAGGTGAGAATGAAACTGTTTGTGGTAAGTGGC
*
8890532 ATTGACAACTATGACCTTGAGACTTCTTAGATGCTCAAGATTGCAGAATTGGTGCATTGGGTTTC
196 ATTGACAACTATGACCTTGAGACTTCTTAGATGCTCAAGATTGCAGAATTGGTGCATTGGGTTTA
8890597 TGCAACCTTGAATATGATTACAATAAACCAAGCAAGATCATGTCTCCATGGCTACTGAATTTCAA
261 TGCAACCTTGAATATGATTACAATAAACCAAGCAAGATCATGTCTCCATGGCTACTGAATTTCAA
8890662 CAAATAGAGTTGATGTCAAGCATAAATATTTGCAGAAATTTCATTAAATAAACTTTG-AGTGCTA
326 CAAATAGAGTTGATGTCAAGCATAAATATTTGCAGAAATTTCATTAAATAAACTTTGAAGTGCTA
8890726 TTGACAACTACGGTTTGGAGTTTGTGTGGCTTTTGAGATTTGAATGCA
391 TTGACAACTACGG-TTGGAGTTTGTGTGGCTTTTGAGATTTGAATGCA
8890774 TAGCAGCAAGTCTACTACAACCATTCAAACAACCTAAAAAGACAATCTTTGTAAGGTACCTTGAA
1 TAGCAGCAAGTCTACTACAACCATTCAAACAACCTAAAAAGACAATCTTTGTAAGGTACCTTGAA
8890839 ATCCCTTGATGCAAATGATACAAGGATCTTAGGATGGTGTTTCAATACTAATAACTTCGCACCTA
66 ATCCCTTGATGCAAATGATACAAGGATCTTAGGATGGTGTTTCAATACTAATAACTTCGCACCTA
8890904 TTAAAGATGTGTTCAGTTTTAATATTCTTGCCTAGGTGAGAATGAAACTGTTTGTGGTAAGTGGC
131 TTAAAGATGTGTTCAGTTTTAATATTCTTGCCTAGGTGAGAATGAAACTGTTTGTGGTAAGTGGC
8890969 ATTGACAACTATGACCTTGAGACTTCTTAGATGCTCAAGATTGCAGAATTGGTGCATTGGGTTTA
196 ATTGACAACTATGACCTTGAGACTTCTTAGATGCTCAAGATTGCAGAATTGGTGCATTGGGTTTA
8891034 TGCAA-CTTGAATATGA-TACAATAAACCAAGCAAGATCATGTCTCCATGGCTACTGAATTTCAA
261 TGCAACCTTGAATATGATTACAATAAACCAAGCAAGATCATGTCTCCATGGCTACTGAATTTCAA
*
8891097 CAAATAGAGTTGATGTCAAGCATAAATATTTGCAGAAATTTCATTAAATAAGCTTTGAAGTGCTA
326 CAAATAGAGTTGATGTCAAGCATAAATATTTGCAGAAATTTCATTAAATAAACTTTGAAGTGCTA
8891162 TTGACAACTACGGTTGGAGTTTGTGTGGCTTTTGAGATTTGAATGCA
391 TTGACAACTACGGTTGGAGTTTGTGTGGCTTTTGAGATTTGAATGCA
8891209 TAGCAGCAAGTCTACTACAACCATTCAAACAACCTAAAAAGACAATCTTTGTAAGGTACCTTGAA
1 TAGCAGCAAGTCTACTACAACCATTCAAACAACCTAAAAAGACAATCTTTGTAAGGTACCTTGAA
8891274 ATCCCTTGATGCAAATGATACAAGGATCTTAGGATGGTGTTTCAATACTAATAACTTCGCACCTA
66 ATCCCTTGATGCAAATGATACAAGGATCTTAGGATGGTGTTTCAATACTAATAACTTCGCACCTA
*
8891339 TTAAAGATGTGTTCAGTTTTAATATTCTTGCCTAGGTGAGAATGAAACTGTTTGTGGTAGGTGGC
131 TTAAAGATGTGTTCAGTTTTAATATTCTTGCCTAGGTGAGAATGAAACTGTTTGTGGTAAGTGGC
8891404 ATTGACAACTATGACCTTGAGACTTCTTAGATGCTCAAGATTGCAGAATTGGTGCATTGGGTTTA
196 ATTGACAACTATGACCTTGAGACTTCTTAGATGCTCAAGATTGCAGAATTGGTGCATTGGGTTTA
8891469 TGCAACCTTGAATATGATTACAATAAACCAAGCAAGATCATGTCTCCATGGCTACTGAATTTCAA
261 TGCAACCTTGAATATGATTACAATAAACCAAGCAAGATCATGTCTCCATGGCTACTGAATTTCAA
* *
8891534 CAAATAGACTTGATGTCAAGCATAAATATTTGCTGAAATTTCATTAAATAAACTTTGAAGTGCTA
326 CAAATAGAGTTGATGTCAAGCATAAATATTTGCAGAAATTTCATTAAATAAACTTTGAAGTGCTA
*
8891599 TTGACAACTACGGTTGGAGTTTGTGTGGCTTTTGAGATCTGAATGCA
391 TTGACAACTACGGTTGGAGTTTGTGTGGCTTTTGAGATTTGAATGCA
8891646 TA
1 TA
8891648 CAACTCTGCA
Statistics
Matches: 2545, Mismatches: 54, Indels: 32
0.97 0.02 0.01
Matches are distributed among these distances:
429 48 0.02
430 62 0.02
431 101 0.04
432 92 0.04
433 60 0.02
434 48 0.02
435 539 0.21
436 227 0.09
437 1368 0.54
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.31
Consensus pattern (437 bp):
TAGCAGCAAGTCTACTACAACCATTCAAACAACCTAAAAAGACAATCTTTGTAAGGTACCTTGAA
ATCCCTTGATGCAAATGATACAAGGATCTTAGGATGGTGTTTCAATACTAATAACTTCGCACCTA
TTAAAGATGTGTTCAGTTTTAATATTCTTGCCTAGGTGAGAATGAAACTGTTTGTGGTAAGTGGC
ATTGACAACTATGACCTTGAGACTTCTTAGATGCTCAAGATTGCAGAATTGGTGCATTGGGTTTA
TGCAACCTTGAATATGATTACAATAAACCAAGCAAGATCATGTCTCCATGGCTACTGAATTTCAA
CAAATAGAGTTGATGTCAAGCATAAATATTTGCAGAAATTTCATTAAATAAACTTTGAAGTGCTA
TTGACAACTACGGTTGGAGTTTGTGTGGCTTTTGAGATTTGAATGCA
Found at i:8896273 original size:12 final size:12
Alignment explanation
Indices: 8896230--8896297 Score: 52
Period size: 12 Copynumber: 5.7 Consensus size: 12
8896220 TTTTTATATA
8896230 TTATT-AATTTT
1 TTATTAAATTTT
*
8896241 TACATTAAATTTT
1 T-TATTAAATTTT
**
8896254 AGATTTAAATTTT
1 TTA-TTAAATTTT
*
8896267 TTATTAAAATTT
1 TTATTAAATTTT
8896279 TT-TTAAATTATT
1 TTATTAAATT-TT
8896291 TT-TTAAA
1 TTATTAAA
8896298 AAAATTTTAC
Statistics
Matches: 46, Mismatches: 7, Indels: 7
0.77 0.12 0.12
Matches are distributed among these distances:
11 7 0.15
12 23 0.50
13 16 0.35
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.60
Consensus pattern (12 bp):
TTATTAAATTTT
Found at i:8896305 original size:23 final size:23
Alignment explanation
Indices: 8896257--8896306 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
8896247 AAATTTTAGA
***
8896257 TTTAAATTTTTTATTAAAATTTT
1 TTTAAATTTTTTATTAAAAAAAT
8896280 TTTAAATTATTTT-TTAAAAAAAT
1 TTTAAATT-TTTTATTAAAAAAAT
8896303 TTTA
1 TTTA
8896307 CAAATTTCAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 19 0.83
24 4 0.17
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (23 bp):
TTTAAATTTTTTATTAAAAAAAT
Found at i:8902632 original size:14 final size:14
Alignment explanation
Indices: 8902585--8902641 Score: 53
Period size: 14 Copynumber: 4.1 Consensus size: 14
8902575 TTTTTGTTTA
8902585 TATTTTTTATTTTC
1 TATTTTTTATTTTC
****
8902599 -ATTTTTTATAAAA
1 TATTTTTTATTTTC
*
8902612 TAATTTTTATTTTC
1 TATTTTTTATTTTC
*
8902626 TATTTTTTGTTTTC
1 TATTTTTTATTTTC
8902640 TA
1 TA
8902642 AAAATTTATT
Statistics
Matches: 31, Mismatches: 11, Indels: 2
0.70 0.25 0.05
Matches are distributed among these distances:
13 9 0.29
14 22 0.71
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.70
Consensus pattern (14 bp):
TATTTTTTATTTTC
Found at i:8903799 original size:19 final size:22
Alignment explanation
Indices: 8903775--8903819 Score: 69
Period size: 19 Copynumber: 2.2 Consensus size: 22
8903765 TAAAGTTTTT
8903775 TTAATATTT-AATT-ATTT-AA
1 TTAATATTTAAATTAATTTAAA
8903794 TTAATATTTAAATTAATTTAAA
1 TTAATATTTAAATTAATTTAAA
8903816 TTAA
1 TTAA
8903820 ATCAAATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.39
20 4 0.17
21 4 0.17
22 6 0.26
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
TTAATATTTAAATTAATTTAAA
Found at i:8908690 original size:29 final size:29
Alignment explanation
Indices: 8908604--8908690 Score: 74
Period size: 29 Copynumber: 3.0 Consensus size: 29
8908594 TTTTAAATTG
* *
8908604 TATTTTT-ATATTTCAATATTAATTTAAGA
1 TATTTTTAATA-TTAAATATTAATTTAATA
* *
8908633 -ATATTTTAAT-CTATCATATT-ATTTAAATA
1 TAT-TTTTAATATTA-AATATTAATTT-AATA
8908662 TATTTTTAATATTAAATATTAATTTAATA
1 TATTTTTAATATTAAATATTAATTTAATA
8908691 GTAATTTAGT
Statistics
Matches: 45, Mismatches: 6, Indels: 14
0.69 0.09 0.22
Matches are distributed among these distances:
28 7 0.16
29 28 0.62
30 10 0.22
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.54
Consensus pattern (29 bp):
TATTTTTAATATTAAATATTAATTTAATA
Found at i:8908780 original size:27 final size:29
Alignment explanation
Indices: 8908711--8908780 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 29
8908701 ATTGAATTAT
8908711 ATTTTAATATTAACAATATTATAATATTTA
1 ATTTTAATATTAACAATA-TATAATATTTA
* *
8908741 ATATTAATCATTAA-ACTA-AT-ATATTTAA
1 ATTTTAAT-ATTAACAATATATAATATTT-A
8908769 ATTTTAATATTA
1 ATTTTAATATTA
8908781 TTTTAATAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
27 10 0.29
28 10 0.29
30 10 0.29
31 5 0.14
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (29 bp):
ATTTTAATATTAACAATATATAATATTTA
Found at i:8908792 original size:28 final size:28
Alignment explanation
Indices: 8908731--8908794 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 28
8908721 TAACAATATT
8908731 ATAATATTTAATATTAATCATTAAACTA
1 ATAATATTTAATATTAATCATTAAACTA
* ***
8908759 AT-ATATTTAAATTTTAAT-ATTATTTTA
1 ATAATATTT-AATATTAATCATTAAACTA
8908786 ATAATATTT
1 ATAATATTT
8908795 TAAAAAGAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
27 14 0.47
28 16 0.53
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (28 bp):
ATAATATTTAATATTAATCATTAAACTA
Found at i:8908940 original size:29 final size:28
Alignment explanation
Indices: 8908856--8908950 Score: 111
Period size: 29 Copynumber: 3.2 Consensus size: 28
8908846 GGCAAAATAT
8908856 TTTAATATTCTATTGAATATTGAATATTTAA
1 TTTAATATTCT-TT-AATATTGAATA-TTAA
* *
8908887 TTTAATGATT-TTTAATATGGGATATTAA
1 TTTAAT-ATTCTTTAATATTGAATATTAA
*
8908915 TTTAATATTCTGTTAATATTAAATATTAA
1 TTTAATATTCT-TTAATATTGAATATTAA
8908944 TTTAATA
1 TTTAATA
8908951 ATATTTTAGT
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
27 3 0.05
28 11 0.20
29 30 0.54
30 2 0.04
31 7 0.12
32 3 0.05
ACGTcount: A:0.39, C:0.02, G:0.07, T:0.52
Consensus pattern (28 bp):
TTTAATATTCTTTAATATTGAATATTAA
Found at i:8908963 original size:29 final size:29
Alignment explanation
Indices: 8908871--8908983 Score: 104
Period size: 29 Copynumber: 3.9 Consensus size: 29
8908861 TATTCTATTG
*
8908871 AATATTGAATATTTAATTTAATGAT-TTTT
1 AATATTGAATA-TTAATTTAATAATATTTT
* * * * *
8908900 AATATGGGATATTAATTTAATATTCTGTT
1 AATATTGAATATTAATTTAATAATATTTT
*
8908929 AATATTAAATATTAATTTAATAATATTTT
1 AATATTGAATATTAATTTAATAATATTTT
* * * *
8908958 AGTATTTACTATT-ATTTAATTATATT
1 AATATTGAATATTAATTTAATAATATT
8908984 AAAATAATAT
Statistics
Matches: 68, Mismatches: 15, Indels: 3
0.79 0.17 0.03
Matches are distributed among these distances:
28 23 0.34
29 45 0.66
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.53
Consensus pattern (29 bp):
AATATTGAATATTAATTTAATAATATTTT
Found at i:8914923 original size:9 final size:9
Alignment explanation
Indices: 8914889--8914956 Score: 57
Period size: 9 Copynumber: 7.6 Consensus size: 9
8914879 TTTTATAAAT
8914889 ATATATTTA
1 ATATATTTA
* *
8914898 ACATGTTTA
1 ATATATTTA
**
8914907 ATGCATTTA
1 ATATATTTA
8914916 ATATATTTA
1 ATATATTTA
8914925 ATATATTT-
1 ATATATTTA
*
8914933 TTATATTTA
1 ATATATTTA
* *
8914942 TTTTAATTTA
1 ATAT-ATTTA
8914952 ATATA
1 ATATA
8914957 AACTTATAAA
Statistics
Matches: 45, Mismatches: 12, Indels: 4
0.74 0.20 0.07
Matches are distributed among these distances:
8 7 0.16
9 31 0.69
10 7 0.16
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (9 bp):
ATATATTTA
Found at i:8915374 original size:10 final size:10
Alignment explanation
Indices: 8915354--8915425 Score: 76
Period size: 10 Copynumber: 7.3 Consensus size: 10
8915344 AATTGTGTTA
*
8915354 TTATATATAT
1 TTATATTTAT
*
8915364 TCATATTTA-
1 TTATATTTAT
*
8915373 TTATATCTAT
1 TTATATTTAT
* *
8915383 TCATATATAT
1 TTATATTTAT
8915393 TTATA-TTAT
1 TTATATTTAT
8915402 TTATATTTAT
1 TTATATTTAT
8915412 TTATATTATAT
1 TTATATT-TAT
8915423 TTA
1 TTA
8915426 AAAAATTAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
9 15 0.29
10 30 0.59
11 6 0.12
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (10 bp):
TTATATTTAT
Found at i:8915375 original size:19 final size:19
Alignment explanation
Indices: 8915351--8915423 Score: 85
Period size: 19 Copynumber: 3.7 Consensus size: 19
8915341 TTTAATTGTG
8915351 TTATTATATATATTCATAT
1 TTATTATATATATTCATAT
*
8915370 TTATTATATCTATTCATAT
1 TTATTATATATATTCATAT
* *
8915389 ATATT-TATATTATTTATAT
1 TTATTATATA-TATTCATAT
8915408 TTATTTATATTATATT
1 TTA-TTATA-TATATT
8915424 TAAAAAATTA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
18 3 0.07
19 32 0.71
20 2 0.04
21 6 0.13
22 2 0.04
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (19 bp):
TTATTATATATATTCATAT
Found at i:8915388 original size:29 final size:28
Alignment explanation
Indices: 8915352--8915423 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 28
8915342 TTAATTGTGT
8915352 TATTATATATATTCATATT-TATTATATC
1 TATTATATATATTCATATTAT-TTATATC
* *
8915380 TATTCATATATATTTATATTATTTATATT
1 TATT-ATATATATTCATATTATTTATATC
8915409 TATTTATATTATATT
1 TA-TTATA-TATATT
8915424 TAAAAAATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
28 4 0.11
29 25 0.66
30 9 0.24
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (28 bp):
TATTATATATATTCATATTATTTATATC
Found at i:8915522 original size:18 final size:20
Alignment explanation
Indices: 8915493--8915543 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 20
8915483 TATCGCATCC
*
8915493 ATATTTAAAATTTAAATA-T
1 ATATTTATAATTTAAATATT
8915512 AT-TTTATAA-TT-AATATT
1 ATATTTATAATTTAAATATT
*
8915529 ATATTTATATTTTAA
1 ATATTTATAATTTAA
8915544 TAATTGATGC
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
16 4 0.15
17 5 0.19
18 12 0.46
19 4 0.15
20 1 0.04
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
ATATTTATAATTTAAATATT
Found at i:8917388 original size:20 final size:20
Alignment explanation
Indices: 8917363--8917410 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
8917353 TTTTATTTTA
8917363 TTTTAAAAT-ATATTTAAAAT
1 TTTTAAAATGAT-TTTAAAAT
*
8917383 TTTTAAAATGATTTTAATAT
1 TTTTAAAATGATTTTAAAAT
8917403 TATTTAAA
1 T-TTTAAA
8917411 CAGTTATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 17 0.68
21 8 0.32
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (20 bp):
TTTTAAAATGATTTTAAAAT
Found at i:8918065 original size:16 final size:16
Alignment explanation
Indices: 8918030--8918071 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
8918020 TTGATTAAAT
* **
8918030 TTTTTTGTTATTTTTC
1 TTTTTTGTTAATTTGA
8918046 TTTTTTGTTAATTTGA
1 TTTTTTGTTAATTTGA
8918062 TTTTTT-TTAA
1 TTTTTTGTTAA
8918072 GAAAATGATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 4 0.17
16 19 0.83
ACGTcount: A:0.14, C:0.02, G:0.07, T:0.76
Consensus pattern (16 bp):
TTTTTTGTTAATTTGA
Found at i:8918381 original size:530 final size:536
Alignment explanation
Indices: 8917829--8918892 Score: 1917
Period size: 530 Copynumber: 2.0 Consensus size: 536
8917819 TTTTTATTAT
*
8917829 TTTTTTTATTTTTATGTATTTGATAAATATTTTTTAGATTTTAAATTTTTTATCTTCCTAACTTG
1 TTTTTTTATTTTTATGTATTTGATAAATATTTTTTAGATTTAAAATTTTTTATCTTCCTAACTTG
*
8917894 ATAGAATATGCCATATGTCAAATTATTTTCTTTTTTTCTATTTTTTTTATCATTTTTATTGACTT
66 ATAGAATATGCCATATGTCAAATTATTTTCTTTTTTTCTATATTTTTTATCATTTTTATTGACTT
* * *
8917959 TTGCTATTTTTTTCTTTTTTAAATATTTTAACTTTTTTAATGTTAGACTTATTTGCTATTATTGA
131 TTGCTA-TTTTTTCCTTTTTAAAGATTTTAACTTTTTTAATGTTAGACTTATTTGATATTATTGA
*
8918024 TTAAATTTTTTTGTTATTTTTCTTTTTTGTTAATTTGAT-TTTTTTTAAGAAAATGATATTAAGG
195 TTAAATTTTTTTGTTATTTTTCCTTTTTGTTAATTTGATATTTTTTTAAGAAAATGATATTAAGG
8918088 AAAGCTCACATTGCTAATGTGGGGTGATAACTCGATTTTCTTC-T-TTTTTTTTTTTTTT-GGAT
260 AAAGCTCACATTGCTAATGTGGGGTGATAACTCGATTTTCTTCTTCTTTTTTTTTTTTTTGGGAT
8918150 TTTCATCA-TTTCTTTCTAATTTTTG-TTATTTTTTAATTCTAATTAGATAATTTTATTGAGAAA
325 TTTCATCATTTTCTTTCTAATTTTTGTTTATTTTTTAATTCTAATTAGATAATTTTATTGAGAAA
8918213 AAAGTAATAAATGTGTACATGTTGCACTCTATATCGCTTTTGTTGCCTTTTGTATTTTTGCATTT
390 AAAGTAATAAATGTGTACATGTTGCACTCTATATCGCTTTTGTTGCCTTTTGTATTTTTGCATTT
* *
8918278 TT-TTTTTTAATATAATAATTCACAACAAAATAAGCCGATAAATAAATTTTTAAAGAAAATGTTA
455 TTATTTTTTAATAGAATAATTCACAACAAAATAAGCCGATAAATAAACTTTTAAAGAAAATGTTA
8918342 ATGGAGATATGAATATA
520 ATGGAGATATGAATATA
8918359 TTTTTTTATTTTTATGTATTTGATAAATATTTTTTAGATTTAAAATTTTTTATCTTCCTAACTTG
1 TTTTTTTATTTTTATGTATTTGATAAATATTTTTTAGATTTAAAATTTTTTATCTTCCTAACTTG
* *
8918424 ATAGAATATGCCATATGTCAAATTATTTTCTTTTTTTTTCTATTTTTTATCATTTTTATTGACTT
66 ATAGAATATGCCATATGTCAAATTATTTTCTTTTTTTCTATATTTTTTATCATTTTTATTGACTT
8918489 TTGCTATTTTTTCCTTTTTAAAGATTTTAACTTTTTTAATGTTAGACTTATTTGATATTATTGAT
131 TTGCTATTTTTTCCTTTTTAAAGATTTTAACTTTTTTAATGTTAGACTTATTTGATATTATTGAT
8918554 TAAATTTTTTTGTTATTTTTCCTTTTTGTTAATTTGATATTTTTTTAAGAAAATGATATTAAGGA
196 TAAATTTTTTTGTTATTTTTCCTTTTTGTTAATTTGATATTTTTTTAAGAAAATGATATTAAGGA
8918619 AAGCTCACATTGCTAATGTGGGGTGATAACTCGATTTTCTTCTTCTTTTTTTTTTTTTTGGGATT
261 AAGCTCACATTGCTAATGTGGGGTGATAACTCGATTTTCTTCTTCTTTTTTTTTTTTTTGGGATT
* * * *
8918684 TTCGTCATTTTTTTTTTAATTTTTGTTTTTTTTTTAATTCTAATTAGATAATTTTATTGAGAAAA
326 TTCATCATTTTCTTTCTAATTTTTGTTTATTTTTTAATTCTAATTAGATAATTTTATTGAGAAAA
8918749 AAGTAATAAATGTGTACATGTTGCACTCTATATCGCTTTTGTTGCCTTTTGTATTTTTGCATTTT
391 AAGTAATAAATGTGTACATGTTGCACTCTATATCGCTTTTGTTGCCTTTTGTATTTTTGCATTTT
* **
8918814 TATTTTTTAATAGAATAATTTACAACAAAATAAGTTGATAAATAAACTTTTAAAGAAAATGTTAA
456 TATTTTTTAATAGAATAATTCACAACAAAATAAGCCGATAAATAAACTTTTAAAGAAAATGTTAA
8918879 TGGAGATATGAATA
521 TGGAGATATGAATA
8918893 ACAAAATAAT
Statistics
Matches: 510, Mismatches: 17, Indels: 8
0.95 0.03 0.01
Matches are distributed among these distances:
529 93 0.18
530 200 0.39
531 1 0.00
532 14 0.03
533 11 0.02
534 15 0.03
535 104 0.20
536 72 0.14
ACGTcount: A:0.28, C:0.08, G:0.10, T:0.54
Consensus pattern (536 bp):
TTTTTTTATTTTTATGTATTTGATAAATATTTTTTAGATTTAAAATTTTTTATCTTCCTAACTTG
ATAGAATATGCCATATGTCAAATTATTTTCTTTTTTTCTATATTTTTTATCATTTTTATTGACTT
TTGCTATTTTTTCCTTTTTAAAGATTTTAACTTTTTTAATGTTAGACTTATTTGATATTATTGAT
TAAATTTTTTTGTTATTTTTCCTTTTTGTTAATTTGATATTTTTTTAAGAAAATGATATTAAGGA
AAGCTCACATTGCTAATGTGGGGTGATAACTCGATTTTCTTCTTCTTTTTTTTTTTTTTGGGATT
TTCATCATTTTCTTTCTAATTTTTGTTTATTTTTTAATTCTAATTAGATAATTTTATTGAGAAAA
AAGTAATAAATGTGTACATGTTGCACTCTATATCGCTTTTGTTGCCTTTTGTATTTTTGCATTTT
TATTTTTTAATAGAATAATTCACAACAAAATAAGCCGATAAATAAACTTTTAAAGAAAATGTTAA
TGGAGATATGAATATA
Found at i:8920846 original size:12 final size:12
Alignment explanation
Indices: 8920829--8920871 Score: 61
Period size: 12 Copynumber: 3.6 Consensus size: 12
8920819 GCCTTAATTA
8920829 TATATATTAAAT
1 TATATATTAAAT
8920841 TATATATTAAAT
1 TATATATTAAAT
*
8920853 TA-ATTATTTAAT
1 TATA-TATTAAAT
8920865 TATATAT
1 TATATAT
8920872 ATGTGTTATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
11 1 0.04
12 26 0.93
13 1 0.04
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
TATATATTAAAT
Found at i:8920865 original size:24 final size:26
Alignment explanation
Indices: 8920824--8920871 Score: 73
Period size: 24 Copynumber: 1.9 Consensus size: 26
8920814 TTTTTGCCTT
8920824 AATTATATATATTAAATTATATATTA
1 AATTATATATATTAAATTATATATTA
*
8920850 AATTA-AT-TATTTAATTATATAT
1 AATTATATATATTAAATTATATAT
8920872 ATGTGTTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 14 0.67
25 2 0.10
26 5 0.24
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (26 bp):
AATTATATATATTAAATTATATATTA
Found at i:8921821 original size:7 final size:7
Alignment explanation
Indices: 8921781--8921805 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8921771 AATTTTTTTG
8921781 TTTTTCC
1 TTTTTCC
8921788 TTTTTCC
1 TTTTTCC
8921795 TTTTTCC
1 TTTTTCC
8921802 TTTT
1 TTTT
8921806 AATTATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTTCC
Found at i:8921850 original size:16 final size:15
Alignment explanation
Indices: 8921833--8921861 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8921823 GTATTTATTT
8921833 TTTTAT-TGTATAAA
1 TTTTATATGTATAAA
8921847 TTTTATATGTATAAA
1 TTTTATATGTATAAA
8921862 AAAAGAGACC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (15 bp):
TTTTATATGTATAAA
Found at i:8923672 original size:15 final size:15
Alignment explanation
Indices: 8923654--8923683 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8923644 TTTTTTAATT
*
8923654 TTTTATTTATGATTG
1 TTTTATATATGATTG
8923669 TTTTATATATGATTG
1 TTTTATATATGATTG
8923684 GGCCATTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.13, T:0.63
Consensus pattern (15 bp):
TTTTATATATGATTG
Found at i:8931133 original size:9 final size:9
Alignment explanation
Indices: 8931099--8931142 Score: 52
Period size: 9 Copynumber: 4.9 Consensus size: 9
8931089 TTTTATAAAT
8931099 ATATATTTA
1 ATATATTTA
* *
8931108 ACATGTTTA
1 ATATATTTA
**
8931117 ATGCATTTA
1 ATATATTTA
8931126 ATATATTTA
1 ATATATTTA
8931135 ATATATTT
1 ATATATTT
8931143 TTATATTATT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.52
Consensus pattern (9 bp):
ATATATTTA
Found at i:8931581 original size:10 final size:10
Alignment explanation
Indices: 8931561--8931632 Score: 76
Period size: 10 Copynumber: 7.3 Consensus size: 10
8931551 AATTGTGTTA
*
8931561 TTATATATAT
1 TTATATTTAT
*
8931571 TCATATTTA-
1 TTATATTTAT
*
8931580 TTATATCTAT
1 TTATATTTAT
* *
8931590 TCATATATAT
1 TTATATTTAT
8931600 TTATA-TTAT
1 TTATATTTAT
8931609 TTATATTTAT
1 TTATATTTAT
8931619 TTATATTATAT
1 TTATATT-TAT
8931630 TTA
1 TTA
8931633 AAAATTAATT
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
9 15 0.29
10 30 0.59
11 6 0.12
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (10 bp):
TTATATTTAT
Found at i:8931582 original size:19 final size:19
Alignment explanation
Indices: 8931558--8931630 Score: 85
Period size: 19 Copynumber: 3.7 Consensus size: 19
8931548 TTTAATTGTG
8931558 TTATTATATATATTCATAT
1 TTATTATATATATTCATAT
*
8931577 TTATTATATCTATTCATAT
1 TTATTATATATATTCATAT
* *
8931596 ATATT-TATATTATTTATAT
1 TTATTATATA-TATTCATAT
8931615 TTATTTATATTATATT
1 TTA-TTATA-TATATT
8931631 TAAAAATTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
18 3 0.07
19 32 0.71
20 2 0.04
21 6 0.13
22 2 0.04
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (19 bp):
TTATTATATATATTCATAT
Found at i:8931595 original size:29 final size:28
Alignment explanation
Indices: 8931559--8931630 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 28
8931549 TTAATTGTGT
8931559 TATTATATATATTCATATT-TATTATATC
1 TATTATATATATTCATATTAT-TTATATC
* *
8931587 TATTCATATATATTTATATTATTTATATT
1 TATT-ATATATATTCATATTATTTATATC
8931616 TATTTATATTATATT
1 TA-TTATA-TATATT
8931631 TAAAAATTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
28 4 0.11
29 25 0.66
30 9 0.24
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (28 bp):
TATTATATATATTCATATTATTTATATC
Found at i:8931728 original size:18 final size:20
Alignment explanation
Indices: 8931699--8931749 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 20
8931689 TATCGCATCC
*
8931699 ATATTTAAAATTTAAATA-T
1 ATATTTATAATTTAAATATT
8931718 AT-TTTATAA-TT-AATATT
1 ATATTTATAATTTAAATATT
*
8931735 ATATTTATATTTTAA
1 ATATTTATAATTTAA
8931750 TAATTGATGC
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
16 4 0.15
17 5 0.19
18 12 0.46
19 4 0.15
20 1 0.04
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
ATATTTATAATTTAAATATT
Found at i:8934244 original size:16 final size:16
Alignment explanation
Indices: 8934208--8934250 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
8934198 TATTGATTAA
* *
8934208 ATTTTTTGTTATTTTT
1 ATTTTTTGTTAATTTG
*
8934224 CTTTTTTGTTAATTTG
1 ATTTTTTGTTAATTTG
8934240 ATTTTTT-TTAA
1 ATTTTTTGTTAA
8934251 GAAAATGATA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
15 4 0.17
16 19 0.83
ACGTcount: A:0.16, C:0.02, G:0.07, T:0.74
Consensus pattern (16 bp):
ATTTTTTGTTAATTTG
Found at i:8934849 original size:528 final size:530
Alignment explanation
Indices: 8934009--8935071 Score: 1850
Period size: 528 Copynumber: 2.0 Consensus size: 530
8933999 ACTTTTTTAT
*
8934009 TATTTTTTTTTTATTATGTATTTGATAAATATTTTTTAGATTTTAAATTTTTATCTTCCTAACTT
1 TATTTTTTTTTTATTATGTATTTGATAAATATTTTTTAGATTTAAAATTTTTATCTTCCTAACTT
8934074 GATAGAATATGCCATATGTCAAATTTTTTCTTTTTTTTCTATTTTTTTTATCATTTTTATTGACT
66 GATAGAATATGCCATATGTCAAATTTTTTCTTTTTTTTCTA-TTTTTTTATCATTTTTATTGACT
** * *
8934139 TTTGCTATTTTTTTTTTTTTAAATATTTTAACTTTTTTAATGTTAGACTTATTTGCTATTATTGA
130 TTTGCTATTTTTTCCTTTTTAAAGATTTTAACTTTTTTAATGTTAGACTTATTTGATATTATTGA
*
8934204 TTAAATTTTTTGTTATTTTTCTTTTTTGTTAATTTGATTTTTTTTAAGAAAATGATATTAAGGAA
195 TTAAATTTTTTGTTATTTTTCCTTTTTGTTAATTTGATTTTTTTTAAGAAAATGATATTAAGGAA
*
8934269 AGCTCACATTGCTAATGTGGGGTGATAACTCGATTTTCTTCTTT-TTTTTTTTTTTTGGATTTTC
260 AGCTCACATTGCTAATGTGGGGTGATAACTCGATTTTCTTCTTTCTTTTTTTTTTTGGGATTTTC
8934333 ATCA-TTTCTTTCTAATTTTTG-TTATTTTTTAATTCTAATTAGATAATTTTATTGAGAAAAAAG
325 ATCATTTTCTTTCTAATTTTTGTTTATTTTTTAATTCTAATTAGATAATTTTATTGAGAAAAAAG
8934396 TAATAAATGTGTACATGTTGCACTCTATATCGCTTTTGTTGCCTTTTGTATTTTTGCATTTTT-T
390 TAATAAATGTGTACATGTTGCACTCTATATCGCTTTTGTTGCCTTTTGTATTTTTGCATTTTTAT
* *
8934460 TTTTTAATATAATAATTCACAACAAAATAAGCCGATAAATAAATTTTTAAAGAAAATGTTAATGG
455 TTTTTAATAGAATAATTCACAACAAAATAAGCCGATAAATAAACTTTTAAAGAAAATGTTAATGG
8934525 AGATATGAATA
520 AGATATGAATA
8934536 TATTTTTTTATTT-TTATGTATTTGATAAATATTTTTTAGATTTAAAATTTTTTATCTTCCTAAC
1 TATTTTTTT-TTTATTATGTATTTGATAAATATTTTTTAGATTTAAAA-TTTTTATCTTCCTAAC
8934600 TTGATAGAATATGCCATATGTCAAATTATTTTCTTTTTTTTTCTA-TTTTTTATCATTTTTATTG
64 TTGATAGAATATGCCATATGTCAAATT-TTTTC-TTTTTTTTCTATTTTTTTATCATTTTTATTG
8934664 ACTTTTGCTATTTTTTCCTTTTTAAAGATTTTAACTTTTTTAATGTTAGACTTATTTGATATTAT
127 ACTTTTGCTATTTTTTCCTTTTTAAAGATTTTAACTTTTTTAATGTTAGACTTATTTGATATTAT
8934729 TGATTAAATTTTTTTGTTATTTTTCCTTTTTGTTAATTTGATATTTTTTTAAGAAAATGATATTA
192 TGATTAAA-TTTTTTGTTATTTTTCCTTTTTGTTAATTTGAT-TTTTTTTAAGAAAATGATATTA
*
8934794 AGGAAAGCTCACATTGCTAATGTGGGGTGATAACTCGATTTTCTTCTTCTTTTTTTTTTTTTTGG
255 AGGAAAGCTCACATTGCTAATGTGGGGTGATAACTCGATTTTCTTC-T-TTCTTTTTTTTTTTGG
* * * *
8934859 GATTTTCGTCATTTTTTTTTTAATTTTTGTTTTTTTTTTAATTCTAATTAGATAATTTTATTGAG
318 GATTTTCATCATTTTCTTTCTAATTTTTGTTTATTTTTTAATTCTAATTAGATAATTTTATTGAG
8934924 AAAAAAGTAATAAATGTGTACATGTTGCACTCTATATCGCTTTTGTTGCCTTTTGTATTTTTGCA
383 AAAAAAGTAATAAATGTGTACATGTTGCACTCTATATCGCTTTTGTTGCCTTTTGTATTTTTGCA
* **
8934989 TTTTTATTTTTTAATAGAATAATTTACAACAAAATAAGTTGATAAATAAACTTTTAAAGAAAATG
448 TTTTTATTTTTTAATAGAATAATTCACAACAAAATAAGCCGATAAATAAACTTTTAAAGAAAATG
8935054 TTAATGGAGATATGAATA
513 TTAATGGAGATATGAATA
8935072 GCAAACTAAT
Statistics
Matches: 508, Mismatches: 16, Indels: 15
0.94 0.03 0.03
Matches are distributed among these distances:
527 42 0.08
528 134 0.26
529 37 0.07
530 79 0.16
531 1 0.00
532 2 0.00
533 22 0.04
534 15 0.03
535 104 0.20
536 72 0.14
ACGTcount: A:0.28, C:0.08, G:0.10, T:0.54
Consensus pattern (530 bp):
TATTTTTTTTTTATTATGTATTTGATAAATATTTTTTAGATTTAAAATTTTTATCTTCCTAACTT
GATAGAATATGCCATATGTCAAATTTTTTCTTTTTTTTCTATTTTTTTATCATTTTTATTGACTT
TTGCTATTTTTTCCTTTTTAAAGATTTTAACTTTTTTAATGTTAGACTTATTTGATATTATTGAT
TAAATTTTTTGTTATTTTTCCTTTTTGTTAATTTGATTTTTTTTAAGAAAATGATATTAAGGAAA
GCTCACATTGCTAATGTGGGGTGATAACTCGATTTTCTTCTTTCTTTTTTTTTTTGGGATTTTCA
TCATTTTCTTTCTAATTTTTGTTTATTTTTTAATTCTAATTAGATAATTTTATTGAGAAAAAAGT
AATAAATGTGTACATGTTGCACTCTATATCGCTTTTGTTGCCTTTTGTATTTTTGCATTTTTATT
TTTTAATAGAATAATTCACAACAAAATAAGCCGATAAATAAACTTTTAAAGAAAATGTTAATGGA
GATATGAATA
Found at i:8936219 original size:19 final size:18
Alignment explanation
Indices: 8936195--8936241 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 18
8936185 GTGTATTTCC
8936195 TATTTTTTATTTTTTATCT
1 TATTTTTTATTTTTTAT-T
* *
8936214 TATTTTCTATTTTTTGTT
1 TATTTTTTATTTTTTATT
*
8936232 AATTTTTTAT
1 TATTTTTTAT
8936242 CTTTAATAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 9 0.38
19 15 0.62
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.77
Consensus pattern (18 bp):
TATTTTTTATTTTTTATT
Found at i:8936337 original size:18 final size:18
Alignment explanation
Indices: 8936305--8936343 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
8936295 TACACCAAAC
** *
8936305 TTTTTTTTTTTTTTTATA
1 TTTTTTTTTGATTTTAAA
8936323 TTTTTTTTTGATTTTAAA
1 TTTTTTTTTGATTTTAAA
8936341 TTT
1 TTT
8936344 ATTTCTTAGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (18 bp):
TTTTTTTTTGATTTTAAA
Found at i:8936724 original size:22 final size:21
Alignment explanation
Indices: 8936695--8936739 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
8936685 CATTTTTATC
8936695 TTTTCTTT-TTAATTTTGTTAA
1 TTTTCTTTATTAATTTT-TTAA
*
8936716 TTTTGCTTTATTTATTTTTTAA
1 TTTT-CTTTATTAATTTTTTAA
8936738 TT
1 TT
8936740 ATATAACTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 4 0.19
22 10 0.48
23 7 0.33
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.73
Consensus pattern (21 bp):
TTTTCTTTATTAATTTTTTAA
Found at i:8937878 original size:42 final size:43
Alignment explanation
Indices: 8937809--8937892 Score: 109
Period size: 42 Copynumber: 2.0 Consensus size: 43
8937799 ATTTTGAGAT
*
8937809 TATATATGTATATATAAGTATATATTATTATTTA-TTTAATTA
1 TATATATGTATATATAAGTATAAATTATTATTTACTTTAATTA
* * *
8937851 TATATATGTATATGT-ATTAATAAATTATTTTTTACTTTAATT
1 TATATATGTATATATAAGT-ATAAATTATTATTTACTTTAATT
8937893 TAAAAATTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
41 2 0.06
42 27 0.75
43 7 0.19
ACGTcount: A:0.38, C:0.01, G:0.05, T:0.56
Consensus pattern (43 bp):
TATATATGTATATATAAGTATAAATTATTATTTACTTTAATTA
Found at i:8939871 original size:15 final size:15
Alignment explanation
Indices: 8939853--8939882 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8939843 TGTTTAATTT
*
8939853 TTTTATTTATGATTG
1 TTTTATATATGATTG
8939868 TTTTATATATGATTG
1 TTTTATATATGATTG
8939883 GGCCATTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.13, T:0.63
Consensus pattern (15 bp):
TTTTATATATGATTG
Found at i:8940430 original size:22 final size:22
Alignment explanation
Indices: 8940405--8940447 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8940395 ATATTCTGTC
8940405 CTTAATTCTAAAGATACAAATT
1 CTTAATTCTAAAGATACAAATT
* **
8940427 CTTAATTTTAGGGATACAAAT
1 CTTAATTCTAAAGATACAAAT
8940448 ATATACAGAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.37
Consensus pattern (22 bp):
CTTAATTCTAAAGATACAAATT
Found at i:8943919 original size:18 final size:18
Alignment explanation
Indices: 8943896--8943930 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8943886 ATCCATGAGA
*
8943896 ATTAGAGACTTTACCTGC
1 ATTAGAGACCTTACCTGC
*
8943914 ATTAGAGTCCTTACCTG
1 ATTAGAGACCTTACCTG
8943931 AGTGTGCCAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (18 bp):
ATTAGAGACCTTACCTGC
Found at i:8945774 original size:23 final size:23
Alignment explanation
Indices: 8945712--8945778 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 23
8945702 CTATTTAGAC
*
8945712 GAATGATAAAATTAAAAATAATA
1 GAATGATAAAATTAAAATTAATA
* *
8945735 GAGAT-ATAAGATT--AATTATTA
1 GA-ATGATAAAATTAAAATTAATA
*
8945756 TAATGATAAAATTAAAATTAATA
1 GAATGATAAAATTAAAATTAATA
8945779 ATAAAAATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
20 2 0.06
21 14 0.41
23 16 0.47
24 2 0.06
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (23 bp):
GAATGATAAAATTAAAATTAATA
Found at i:8945877 original size:17 final size:17
Alignment explanation
Indices: 8945867--8945922 Score: 62
Period size: 17 Copynumber: 3.3 Consensus size: 17
8945857 ATATTGAATT
8945867 AAAATTTATATATAATA
1 AAAATTTATATATAATA
*
8945884 AAAATTTA-A-ATTATA
1 AAAATTTATATATAATA
*
8945899 AAATATTTATAAATTAATA
1 AAA-ATTTATATA-TAATA
8945918 AAAAT
1 AAAAT
8945923 AATTAAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
15 8 0.24
16 6 0.18
17 9 0.27
18 3 0.09
19 7 0.21
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AAAATTTATATATAATA
Found at i:8945911 original size:18 final size:17
Alignment explanation
Indices: 8945867--8945922 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 17
8945857 ATATTGAATT
* *
8945867 AAAATTTATATATAATA
1 AAAATTTATAAATTATA
8945884 AAAA-TT-TAAATTATA
1 AAAATTTATAAATTATA
8945899 AAATATTTATAAATTAATA
1 AAA-ATTTATAAATT-ATA
8945918 AAAAT
1 AAAAT
8945923 AATTAAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
15 10 0.30
16 3 0.09
17 6 0.18
18 8 0.24
19 6 0.18
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AAAATTTATAAATTATA
Found at i:8945927 original size:31 final size:33
Alignment explanation
Indices: 8945870--8945938 Score: 81
Period size: 31 Copynumber: 2.1 Consensus size: 33
8945860 TTGAATTAAA
* *
8945870 ATTTATATATAATAAAAATTTAAATTATAAAA-T
1 ATTTATAAATAATAAAAA-TTAAATTAAAAAATT
8945903 ATTTATAAATTAATAAAAA-T-AATTAAAAAATT
1 ATTTATAAA-TAATAAAAATTAAATTAAAAAATT
8945935 ATTT
1 ATTT
8945939 TTATATCAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
31 9 0.28
32 6 0.19
33 8 0.25
34 9 0.28
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (33 bp):
ATTTATAAATAATAAAAATTAAATTAAAAAATT
Found at i:8945929 original size:18 final size:17
Alignment explanation
Indices: 8945879--8945929 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 17
8945869 AATTTATATA
8945879 TAATAAAAAT-TTAAAT
1 TAATAAAAATATTAAAT
*
8945895 T-ATAAAATATTTATAAAT
1 TAATAAAA-ATAT-TAAAT
8945913 TAATAAAAATAATTAAA
1 TAATAAAAAT-ATTAAA
8945930 AAATTATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
15 6 0.21
16 3 0.10
17 1 0.03
18 12 0.41
19 7 0.24
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
TAATAAAAATATTAAAT
Found at i:8955411 original size:2 final size:2
Alignment explanation
Indices: 8955406--8955452 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
8955396 AAAAAAGATA
*
8955406 TC TC TC TT TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
8955448 TC TC T
1 TC TC T
8955453 ATCTATCTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
TC
Found at i:8955457 original size:4 final size:4
Alignment explanation
Indices: 8955450--8955474 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
8955440 TCTCTCTCTC
8955450 TCTA TCTA TCTA TCTA TCTA TCTA T
1 TCTA TCTA TCTA TCTA TCTA TCTA T
8955475 GTTTCTTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (4 bp):
TCTA
Found at i:8959019 original size:25 final size:25
Alignment explanation
Indices: 8958955--8959019 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
8958945 ATTTGCCAAA
* * *
8958955 AATTATTATAATACCCTTTAATCAT
1 AATTATAAAAATACTCTTTAATCAT
** *
8958980 AATTACGAAAATACTCTTTTATCAT
1 AATTATAAAAATACTCTTTAATCAT
8959005 AATTATAAAAATACT
1 AATTATAAAAATACT
8959020 ACTCATATTA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.45, C:0.14, G:0.02, T:0.40
Consensus pattern (25 bp):
AATTATAAAAATACTCTTTAATCAT
Found at i:8961292 original size:86 final size:86
Alignment explanation
Indices: 8961140--8961300 Score: 200
Period size: 86 Copynumber: 1.9 Consensus size: 86
8961130 CCCTACAACC
* **
8961140 ATAATTAAGAAAATACCCCTCATATTATAATTTGTCAAAATCACTATAATTCCCTTTTACCATAA
1 ATAATTAAGAAAATACCCCTCATATTATAATTAGTCAAAATCACTATAATTAACTTTTACCATAA
*
8961205 TTACGAAAATATCATCTTACT
66 TTACAAAAATATCATCTTACT
* *** * *
8961226 ATAATTATGAAAATATGTCTCATATTATAATTAG-CTAAAATTACTATAA-TAACTTTTAACCGT
1 ATAATTAAGAAAATACCCCTCATATTATAATTAGTC-AAAATCACTATAATTAACTTTT-ACCAT
8961289 AATTACAAAAAT
64 AATTACAAAAAT
8961301 TACCTTTTTG
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
85 7 0.11
86 56 0.89
ACGTcount: A:0.43, C:0.16, G:0.04, T:0.37
Consensus pattern (86 bp):
ATAATTAAGAAAATACCCCTCATATTATAATTAGTCAAAATCACTATAATTAACTTTTACCATAA
TTACAAAAATATCATCTTACT
Found at i:8962833 original size:16 final size:16
Alignment explanation
Indices: 8962812--8962846 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
8962802 AAAAAGAAAC
*
8962812 AAATATGCTAATAAAT
1 AAATATACTAATAAAT
8962828 AAATATACTAATAAAT
1 AAATATACTAATAAAT
8962844 AAA
1 AAA
8962847 AAATTATTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.63, C:0.06, G:0.03, T:0.29
Consensus pattern (16 bp):
AAATATACTAATAAAT
Found at i:8970732 original size:355 final size:355
Alignment explanation
Indices: 8970019--8971542 Score: 2112
Period size: 355 Copynumber: 4.3 Consensus size: 355
8970009 TATAACAAAT
* * * * *
8970019 TATTGAAGGCATTTTATAATAAAAGATGCCTTTAATAATCAAAAAAAATTTTTTTAGGA-AAATT
1 TATTGAAGGCGTGTCATAATAAAAGACGCCTTTAATAATC---AAAAATTTTTTTAAGAGAAATT
** * * * *
8970083 ATTGAAGGTGTTGTTATCTGTAACTGCCTTCAGTAATCATATATAAATTATCATAA-AATTATTA
63 ATTGAAGGCATTGTTATCTGCAACTGCCTTCAGTAATTATATACAAACTATCATAAGAATTATTA
** *
8970147 AAGATGTCTTTCTTGGATATACGCCTTCAATAACAGTGTTAGAATTTGTGTGGGGGGTATATAGA
128 AAGGCGTCTTTCTTGGATATACGCCTTCAATAACAGTGTTAGAATTTGTGT-GGTGGTATATAGA
* * *
8970212 AGGTATTTTACAATAGAAGATGCCTTTAATAATTCCTAAAATTTTTAGTGAGAAAATTTTAAAGG
192 AGGTATTTTACAGTAGAAGATGCCTTTAATAATTCTTAAAATTTTTAGTGAGAAAATTTTGAAGG
* * * **
8970277 CGTATGTTATTAACAAATGCCTTCAGTAATGGATTACTAAGTTTAAAAGTATATTGAAGGTGCCT
257 CGTCTGTTATTAACAAACGCCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGCACCT
* *
8970342 TTTCTAATAAACGCCTTTAATTACCATCATCGTA
322 TTTCTAATAAACACCTTTCATTACCATCATCGTA
* * *
8970376 TATTGAAGGCGCGTCATAATAAAAGACGCATTTAATAATCCAAAATTTTTTTAAGAGAAATTATT
1 TATTGAAGGCGTGTCATAATAAAAGACGCCTTTAATAATCAAAAATTTTTTTAAGAGAAATTATT
* * *
8970441 GAAGGCATTGTTATTTGCAACTGTCTTCAGTAATTATATACAAACTGTCAT-AGAAATTATTAAA
66 GAAGGCATTGTTATCTGCAACTGCCTTCAGTAATTATATACAAACTATCATAAG-AATTATTAAA
* *
8970505 GGTGTCTTTCTTGGATATACGCCTTCAATAACAATGTTAGAATTTGTGTGGTGGTATATAGAAGG
130 GGCGTCTTTCTTGGATATACGCCTTCAATAACAGTGTTAGAATTTGTGTGGTGGTATATAGAAGG
* * *
8970570 TATTTTACAGTAAAAGATGCCTTTAATAATTTTTAAAATTTTTAGTG-GAAAAATTTTGAAGGTG
195 TATTTTACAGTAGAAGATGCCTTTAATAATTCTTAAAATTTTTAGTGAG-AAAATTTTGAAGGCG
* *
8970634 TCTGTTATTGACAAACGCCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGCACATTT
259 TCTGTTATTAACAAACGCCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGCACCTTT
* * * *
8970699 TTTAATAAACGCCTTCCATTACCATCGTCGTA
324 TCTAATAAACACCTTTCATTACCATCATCGTA
* * * *
8970731 TATTGAAGGCATGTCATAATAAAAGACACTTTTAATAATTTGAAAAATTTTTTTAAGAGAAATTA
1 TATTGAAGGCGTGTCATAATAAAAGACGCCTTTAATAA--TCAAAAATTTTTTTAAGAGAAATTA
* * * * * * *
8970796 TTGAAGGCGTTGTTATCTACAA-TCACCTTTAGTAATTATATACAAGCTATTATAAGAATTATCA
64 TTGAAGGCATTGTTATCTGCAACT-GCCTTCAGTAATTATATACAAACTATCATAAGAATTATTA
*
8970860 AAGGCGTCTTTCTTGGATATACGCCTTCAATAACAGTGTTAGAATTTGTGTGATGGTATATAGAA
128 AAGGCGTCTTTCTTGGATATACGCCTTCAATAACAGTGTTAGAATTTGTGTGGTGGTATATAGAA
* * *
8970925 GGTATTTTACAGTAGAAGACGCCTTTAATAATTTTTAAAATTTTTAGTG-GAAAATTTTGAAGGT
193 GGTATTTTACAGTAGAAGATGCCTTTAATAATTCTTAAAATTTTTAGTGAGAAAATTTTGAAGGC
** *
8970989 GTCTGTTATTAACAAACGCCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGTGCTTT
258 GTCTGTTATTAACAAACGCCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGCACCTT
* *
8971054 TTCTAATAAACACCTTTCATTACCATTATTGTA
323 TTCTAATAAACACCTTTCATTACCATCATCGTA
*
8971087 TATTGAA-GCGTGTCATAATAAAAGACGCCTTTAATAATCTGAAAAATTTTTTTAAGAAAAATTA
1 TATTGAAGGCGTGTCATAATAAAAGACGCCTTTAATAATC--AAAAATTTTTTTAAGAGAAATTA
* * * * *
8971151 TTGAAAGCATTGTTATCTGCAACCGCCTTCAGTAATTATATATAAACTGTTATAAGAATTATTAA
64 TTGAAGGCATTGTTATCTGCAACTGCCTTCAGTAATTATATACAAACTATCATAAGAATTATTAA
* * ** *
8971216 AGGCATCTTTCTTGGATATACGCCTTCAATAACAGTGTTAGAATTTATGTGGTAATATATAAAAG
129 AGGCGTCTTTCTTGGATATACGCCTTCAATAACAGTGTTAGAATTTGTGTGGTGGTATATAGAAG
8971281 GTATTTTACAGTAGAAGATGCCTTTAATAATTCTTAAAATTTTTAGTGAGAAAATTTTGAAGGCG
194 GTATTTTACAGTAGAAGATGCCTTTAATAATTCTTAAAATTTTTAGTGAGAAAATTTTGAAGGCG
* * *
8971346 TCTATTATTAACAAATGCCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAATGCACCTTT
259 TCTGTTATTAACAAACGCCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGCACCTTT
* * *
8971411 TCTAATAAACACCTTTCATTACTATCGTTGTA
324 TCTAATAAACACCTTTCATTACCATCATCGTA
* *
8971443 TATTGAAGGCGTATTATAATAAAAGACGCCTTTAATAATCCGAGAAAA-TTTTTTAAG-GAAAAT
1 TATTGAAGGCGTGTCATAATAAAAGACGCCTTTAATAAT-C-A-AAAATTTTTTTAAGAG-AAAT
* *
8971506 TATTGAAGGCATTGTTATTTGCAATTGCCTTCAGTAA
62 TATTGAAGGCATTGTTATCTGCAACTGCCTTCAGTAA
8971543 ACACCTATAT
Statistics
Matches: 1043, Mismatches: 108, Indels: 32
0.88 0.09 0.03
Matches are distributed among these distances:
353 1 0.00
354 16 0.02
355 449 0.43
356 277 0.27
357 293 0.28
358 7 0.01
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (355 bp):
TATTGAAGGCGTGTCATAATAAAAGACGCCTTTAATAATCAAAAATTTTTTTAAGAGAAATTATT
GAAGGCATTGTTATCTGCAACTGCCTTCAGTAATTATATACAAACTATCATAAGAATTATTAAAG
GCGTCTTTCTTGGATATACGCCTTCAATAACAGTGTTAGAATTTGTGTGGTGGTATATAGAAGGT
ATTTTACAGTAGAAGATGCCTTTAATAATTCTTAAAATTTTTAGTGAGAAAATTTTGAAGGCGTC
TGTTATTAACAAACGCCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGCACCTTTTC
TAATAAACACCTTTCATTACCATCATCGTA
Found at i:8971382 original size:712 final size:712
Alignment explanation
Indices: 8970019--8971542 Score: 2211
Period size: 712 Copynumber: 2.1 Consensus size: 712
8970009 TATAACAAAT
* * * *
8970019 TATTGAAGGCATTTTATAATAAAAGATGCCTTTAATAATCAAAAAAAATTTTTTTAGGA-AAATT
1 TATTGAAGGCATATTATAATAAAAGACGCCTTTAATAAT-AAGAAAAATTTTTTTAAGAGAAATT
* ** * * * *
8970083 ATTGAAGGTGTTGTTATCTGTAACTGCCTTCAGTAATCATATATAAATTATCATAAAATTATTAA
65 ATTGAAGGCGTTGTTATCTACAACTACCTTCAGTAATCATATACAAACTATCATAAAATTATCAA
* *
8970148 AGATGTCTTTCTTGGATATACGCCTTCAATAACAGTGTTAGAATTTGTGTGGGGGGTATATAGAA
130 AGACGTCTTTCTTGGATATACGCCTTCAATAACAGTGTTAGAATTTGTGTGGAGGGTATATAGAA
*
8970213 GGTATTTTACAATAGAAGATGCCTTTAATAATTCCTAAAATTTTTAGTGAGAAAATTTTAAAGGC
195 GGTATTTTACAATAGAAGACGCCTTTAATAATTCCTAAAATTTTTAGTGAGAAAATTTTAAAGGC
*
8970278 GTATGTTATTAACAAATGCCTTCAGTAATGGATTACTAAGTTTAAAAGTATATTGAAGGTGCCTT
260 GTATGTTATTAACAAACGCCTTCAGTAATGGATTACTAAGTTTAAAAGTATATTGAAGGTGCCTT
*
8970343 TTCTAATAAACGCCTTTAATTACCATCATCGTATATTGAAGGCGCGTCATAATAAAAGACGCATT
325 TTCTAATAAACACCTTTAATTACCATCATCGTATATTGAAGGCGCGTCATAATAAAAGACGCATT
* * * * * *
8970408 TAATAATCCAAAATTTTTTTAAGAGAAATTATTGAAGGCATTGTTATTTGCAACTGTCTTCAGTA
390 TAATAATCAAAAATTTTTTTAAGAAAAATTATTGAAAGCATTGTTATCTGCAACCGCCTTCAGTA
**
8970473 ATTATATACAAACTGTCATAGAAATTATTAAAGGTGTCTTTCTTGGATATACGCCTTCAATAACA
455 ATTATATACAAACTGTCATAGAAATTATTAAAGGCATCTTTCTTGGATATACGCCTTCAATAACA
* ** * *
8970538 ATGTTAGAATTTGTGTGGTGGTATATAGAAGGTATTTTACAGTAAAAGATGCCTTTAATAATTTT
520 ATGTTAGAATTTATGTGGTAATATATAAAAGGTATTTTACAGTAAAAGATGCCTTTAATAATTCT
* * *
8970603 TAAAATTTTTAGTGGAAAAATTTTGAAGGTGTCTGTTATTGACAAACGCCTTCAGTAATGGATTA
585 TAAAATTTTTAGTGGAAAAATTTTGAAGGCGTCTATTATTAACAAACGCCTTCAGTAATGGATTA
* *
8970668 CTAAGTTTAAAGGTATATTGAAGGCACATTTTTTAATAAACGCCTTCCATTACCATCGTCGTA
650 CTAAGTTTAAAGGTATATTGAAGGCACATTTTCTAATAAACACCTTCCATTACCATCGTCGTA
* * * * **
8970731 TATTGAAGGCATGTCATAATAAAAGACACTTTTAATAATTTGAAAAATTTTTTTAAGAGAAATTA
1 TATTGAAGGCATATTATAATAAAAGACGCCTTTAATAATAAGAAAAATTTTTTTAAGAGAAATTA
* * * *
8970796 TTGAAGGCGTTGTTATCTACAA-TCACCTTTAGTAATTATATACAAGCTATTATAAGAATTATCA
66 TTGAAGGCGTTGTTATCTACAACT-ACCTTCAGTAATCATATACAAACTATCATAA-AATTATCA
* *
8970860 AAGGCGTCTTTCTTGGATATACGCCTTCAATAACAGTGTTAGAATTTGTGT-GATGGTATATAGA
129 AAGACGTCTTTCTTGGATATACGCCTTCAATAACAGTGTTAGAATTTGTGTGGAGGGTATATAGA
* ** *
8970924 AGGTATTTTACAGTAGAAGACGCCTTTAATAATTTTTAAAATTTTTAGTG-GAAAATTTTGAAGG
194 AGGTATTTTACAATAGAAGACGCCTTTAATAATTCCTAAAATTTTTAGTGAGAAAATTTTAAAGG
* * * *
8970988 TGTCTGTTATTAACAAACGCCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGTGCTT
259 CGTATGTTATTAACAAACGCCTTCAGTAATGGATTACTAAGTTTAAAAGTATATTGAAGGTGCCT
* * * * *
8971053 TTTCTAATAAACACCTTTCATTACCATTATTGTATATTGAA-GCGTGTCATAATAAAAGACGCCT
324 TTTCTAATAAACACCTTTAATTACCATCATCGTATATTGAAGGCGCGTCATAATAAAAGACGCAT
8971117 TTAATAATCTGAAAAATTTTTTTAAGAAAAATTATTGAAAGCATTGTTATCTGCAACCGCCTTCA
389 TTAATAATC--AAAAATTTTTTTAAGAAAAATTATTGAAAGCATTGTTATCTGCAACCGCCTTCA
* *
8971182 GTAATTATATATAAACTGTTATA-AGAATTATTAAAGGCATCTTTCTTGGATATACGCCTTCAAT
452 GTAATTATATACAAACTGTCATAGA-AATTATTAAAGGCATCTTTCTTGGATATACGCCTTCAAT
* *
8971246 AACAGTGTTAGAATTTATGTGGTAATATATAAAAGGTATTTTACAGTAGAAGATGCCTTTAATAA
516 AACAATGTTAGAATTTATGTGGTAATATATAAAAGGTATTTTACAGTAAAAGATGCCTTTAATAA
*
8971311 TTCTTAAAATTTTTAGT-GAGAAAATTTTGAAGGCGTCTATTATTAACAAATGCCTTCAGTAATG
581 TTCTTAAAATTTTTAGTGGA-AAAATTTTGAAGGCGTCTATTATTAACAAACGCCTTCAGTAATG
* * * * *
8971375 GATTACTAAGTTTAAAGGTATATTGAATGCACCTTTTCTAATAAACACCTTTCATTACTATCGTT
645 GATTACTAAGTTTAAAGGTATATTGAAGGCACATTTTCTAATAAACACCTTCCATTACCATCGTC
8971440 GTA
710 GTA
* **
8971443 TATTGAAGGCGTATTATAATAAAAGACGCCTTTAATAATCCGAGAAAA-TTTTTTAAG-GAAAAT
1 TATTGAAGGCATATTATAATAAAAGACGCCTTTAATAATAAGA-AAAATTTTTTTAAGAG-AAAT
* * * * *
8971506 TATTGAAGGCATTGTTATTTGCAATTGCCTTCAGTAA
64 TATTGAAGGCGTTGTTATCTACAACTACCTTCAGTAA
8971543 ACACCTATAT
Statistics
Matches: 722, Mismatches: 80, Indels: 20
0.88 0.10 0.02
Matches are distributed among these distances:
710 30 0.04
711 130 0.18
712 501 0.69
713 61 0.08
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (712 bp):
TATTGAAGGCATATTATAATAAAAGACGCCTTTAATAATAAGAAAAATTTTTTTAAGAGAAATTA
TTGAAGGCGTTGTTATCTACAACTACCTTCAGTAATCATATACAAACTATCATAAAATTATCAAA
GACGTCTTTCTTGGATATACGCCTTCAATAACAGTGTTAGAATTTGTGTGGAGGGTATATAGAAG
GTATTTTACAATAGAAGACGCCTTTAATAATTCCTAAAATTTTTAGTGAGAAAATTTTAAAGGCG
TATGTTATTAACAAACGCCTTCAGTAATGGATTACTAAGTTTAAAAGTATATTGAAGGTGCCTTT
TCTAATAAACACCTTTAATTACCATCATCGTATATTGAAGGCGCGTCATAATAAAAGACGCATTT
AATAATCAAAAATTTTTTTAAGAAAAATTATTGAAAGCATTGTTATCTGCAACCGCCTTCAGTAA
TTATATACAAACTGTCATAGAAATTATTAAAGGCATCTTTCTTGGATATACGCCTTCAATAACAA
TGTTAGAATTTATGTGGTAATATATAAAAGGTATTTTACAGTAAAAGATGCCTTTAATAATTCTT
AAAATTTTTAGTGGAAAAATTTTGAAGGCGTCTATTATTAACAAACGCCTTCAGTAATGGATTAC
TAAGTTTAAAGGTATATTGAAGGCACATTTTCTAATAAACACCTTCCATTACCATCGTCGTA
Found at i:8984075 original size:79 final size:79
Alignment explanation
Indices: 8983986--8984131 Score: 202
Period size: 79 Copynumber: 1.8 Consensus size: 79
8983976 ACTAGTCAGA
* * * * **
8983986 GCCTTATGCTAATTATTATAACCTGTGAGTAAGGTCATATGATCATGGCTATGTTAACTATTATA
1 GCCTTATGCTAACTACTATAACCCGTGAGCAAGGTCATATGATCATGGCTATACTAACTATTATA
8984051 ACATGTTAGCTACG
66 ACATGTTAGCTACG
* * * *
8984065 GCCTTATGCTAACTACTATAACCCGTTAGCAGGGTTATATGATCATGGTTATACTAACTATTATA
1 GCCTTATGCTAACTACTATAACCCGTGAGCAAGGTCATATGATCATGGCTATACTAACTATTATA
8984130 AC
66 AC
8984132 CTAGAACTGG
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
79 57 1.00
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (79 bp):
GCCTTATGCTAACTACTATAACCCGTGAGCAAGGTCATATGATCATGGCTATACTAACTATTATA
ACATGTTAGCTACG
Found at i:8984508 original size:10 final size:10
Alignment explanation
Indices: 8984493--8984523 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
8984483 TTTGATACCA
8984493 TTATATAAAG
1 TTATATAAAG
8984503 TTATATAAAG
1 TTATATAAAG
8984513 TT-TATAAAG
1 TTATATAAAG
8984522 TT
1 TT
8984524 TAACTCAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.43
10 12 0.57
ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45
Consensus pattern (10 bp):
TTATATAAAG
Found at i:8984520 original size:9 final size:9
Alignment explanation
Indices: 8984496--8984525 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
8984486 GATACCATTA
8984496 TATAAAGTT
1 TATAAAGTT
8984505 ATATAAAGTT
1 -TATAAAGTT
8984515 TATAAAGTT
1 TATAAAGTT
8984524 TA
1 TA
8984526 ACTCAACTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.43
Consensus pattern (9 bp):
TATAAAGTT
Found at i:8987862 original size:22 final size:22
Alignment explanation
Indices: 8987832--8987874 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8987822 TAGTGTATTT
8987832 ATATAAAACAAATATACCAATA
1 ATATAAAACAAATATACCAATA
* * *
8987854 ATATTAAACCAATATCCCAAT
1 ATATAAAACAAATATACCAAT
8987875 CTACAAACTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.26
Consensus pattern (22 bp):
ATATAAAACAAATATACCAATA
Found at i:8990893 original size:13 final size:13
Alignment explanation
Indices: 8990875--8990918 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
8990865 CCCTTAACAA
8990875 ACCATTTAGAAAC
1 ACCATTTAGAAAC
*
8990888 ACCATTCA-ACAA-
1 ACCATTTAGA-AAC
8990900 ACCATTTAGAAAC
1 ACCATTTAGAAAC
8990913 ACCATT
1 ACCATT
8990919 CAACAAACCA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
12 10 0.38
13 16 0.62
ACGTcount: A:0.45, C:0.27, G:0.05, T:0.23
Consensus pattern (13 bp):
ACCATTTAGAAAC
Found at i:8990899 original size:25 final size:25
Alignment explanation
Indices: 8990862--8990929 Score: 120
Period size: 25 Copynumber: 2.8 Consensus size: 25
8990852 ATGCTCAGAC
*
8990862 ACACCCTT-AACAAACCATTTAGAA
1 ACACCATTCAACAAACCATTTAGAA
8990886 ACACCATTCAACAAACCATTTAGAA
1 ACACCATTCAACAAACCATTTAGAA
8990911 ACACCATTCAACAAACCAT
1 ACACCATTCAACAAACCAT
8990930 GCAACATATG
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
24 7 0.17
25 35 0.83
ACGTcount: A:0.47, C:0.31, G:0.03, T:0.19
Consensus pattern (25 bp):
ACACCATTCAACAAACCATTTAGAA
Found at i:8990905 original size:12 final size:12
Alignment explanation
Indices: 8990870--8990935 Score: 55
Period size: 12 Copynumber: 5.3 Consensus size: 12
8990860 ACACACCCTT
*
8990870 AACAAACCATTT
1 AACAAACCATTC
8990882 AGA-AACACCATTC
1 A-ACAA-ACCATTC
*
8990895 AACAAACCATTT
1 AACAAACCATTC
8990907 AGA-AACACCATTC
1 A-ACAA-ACCATTC
*
8990920 AACAAACCATGC
1 AACAAACCATTC
8990932 AACA
1 AACA
8990936 TATGATTTAG
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
12 24 0.55
13 20 0.45
ACGTcount: A:0.50, C:0.29, G:0.05, T:0.17
Consensus pattern (12 bp):
AACAAACCATTC
Found at i:8992071 original size:187 final size:186
Alignment explanation
Indices: 8991647--8992469 Score: 920
Period size: 187 Copynumber: 4.4 Consensus size: 186
8991637 ACCTTAAAAT
* *
8991647 TATTAAAGGCATTTTATACTAAAAGACACTTTTAATAATCTAAAAAATTTTTAAAAGAAAATTAT
1 TATTAAAGGCATTTTTTACTAGAAGACACTTTTAATAATCTAAAAAA-TTTTAAAAGAAAATTAT
* * * * * *
8991712 TAAAGGTGTTTATTCTCAAAAAATACCTTCAAAAATTATGTACAAAAATT-AAAAGAAATTAGTG
65 TGAAGGTATTTATTCTAAAAAAACACCTTCAATAATTATGTACATAAATTAAAAAG-AATTAGTG
* * * *
8991776 AAGGTATTTTTTTCTAGAATAAACACCTTCACTAACCATCTTAAATTTTGAGTAATGAAA
129 AAGG--TGTTTTTCTAGAATAAACGCCTTCACTAACCGTCTTAAAATTTGAGTAATGAAA
* * * * *
8991836 TATTGAAGGTATTTTTTCCTAGAAGAC-GTCTTTAATAATCTTAAAAATTTTAAAAAGAAAATTA
1 TATTAAAGGCATTTTTTACTAGAAGACACT-TTTAATAATCTAAAAAATTTT-AAAAGAAAATTA
* * * * * *
8991900 TTAAAGGCATTTGTTCTAAAACAACACTTTTAATAATTATGTACATAAATTAAAAAGAATTAGTG
64 TTGAAGGTATTTATTCTAAAAAAACACCTTCAATAATTATGTACATAAATTAAAAAGAATTAGTG
* * * *
8991965 AAGGTGTTTTTTTAGAATAAATGCCTTCACTAACTGTCTTAAAATTTGAGTATTGAAA
129 AAGGTGTTTTTCTAGAATAAACGCCTTCACTAACCGTCTTAAAATTTGAGTAATGAAA
*
8992023 TATTAAATGCATTTTTTACTAGAAGACACTTTTAATAATCTAAAAAATTTTAAAA-AAAATTATT
1 TATTAAAGGCATTTTTTACTAGAAGACACTTTTAATAATCTAAAAAATTTTAAAAGAAAATTATT
* * * * *
8992087 GAAGGTATTTATTCTAAAAAAATACCTTTAATAATTATGAACA-AAATTAAAAGGAATTATTGAA
66 GAAGGTATTTATTCTAAAAAAACACCTTCAATAATTATGTACATAAATTAAAAAGAATTAGTGAA
* * * * * * * **
8992151 GGTATTTTTCTAAAATAAATGCCTTCACTAACTGTCTTAAAATTTAAATATTGGTA
131 GGTGTTTTTCTAGAATAAACGCCTTCACTAACCGTCTTAAAATTTGAGTAATGAAA
* * * * * * * *
8992207 TATTGAAGGCGTTTTTCATTAGAA-AAAGCCTTTAATAATCCCAAAAATTTTTAAAAGAAAATTA
1 TATTAAAGGCATTTTTTACTAGAAGACA-CTTTTAATAAT-CTAAAAAATTTTAAAAGAAAATTA
** *
8992271 TTGAAGGCGTTTATTCTAAAAAAACACCTTCAATAATTATGTACATAAATTAAAAATAATTAGTG
64 TTGAAGGTATTTATTCTAAAAAAACACCTTCAATAATTATGTACATAAATTAAAAAGAATTAGTG
** * *
8992336 AAGACGTTTTTCTAGAATAAACGCTTTCACTAACCGTCTTAAAATTTGAGTAATGGAA
129 AAGGTGTTTTTCTAGAATAAACGCCTTCACTAACCGTCTTAAAATTTGAGTAATGAAA
* * * * * * * * *
8992394 TATTGATGGTATTTTTCATTAGAAGACGCCTTTAATAATCCCAAAAATATTTTTAAA-AAAATTA
1 TATTAAAGGCATTTTTTACTAGAAGACACTTTTAATAAT-CTAAAAA-ATTTTAAAAGAAAATTA
8992458 TTGAAGGTATTT
64 TTGAAGGTATTT
8992470 TTTTAGAATA
Statistics
Matches: 540, Mismatches: 84, Indels: 22
0.84 0.13 0.03
Matches are distributed among these distances:
183 2 0.00
184 97 0.18
185 59 0.11
186 51 0.09
187 209 0.39
188 14 0.03
189 103 0.19
190 5 0.01
ACGTcount: A:0.43, C:0.10, G:0.11, T:0.37
Consensus pattern (186 bp):
TATTAAAGGCATTTTTTACTAGAAGACACTTTTAATAATCTAAAAAATTTTAAAAGAAAATTATT
GAAGGTATTTATTCTAAAAAAACACCTTCAATAATTATGTACATAAATTAAAAAGAATTAGTGAA
GGTGTTTTTCTAGAATAAACGCCTTCACTAACCGTCTTAAAATTTGAGTAATGAAA
Found at i:8992335 original size:371 final size:373
Alignment explanation
Indices: 8991647--8992469 Score: 1069
Period size: 371 Copynumber: 2.2 Consensus size: 373
8991637 ACCTTAAAAT
* * *
8991647 TATTAAAGGCATTTTATACTAAAAGACACTTTTAATAATCTAAAAAATTTTTAAAAGAAAATTAT
1 TATTAAATGCATTTTTTACTAGAAGACACTTTTAATAATCTAAAAAA-TTTTAAAA-AAAATTAT
* * * *
8991712 TAAAGGTGTTTATTCTCAAAAAATACCTTCAAAAATTATGTACAAAAATTAAAAGAAATTAGTGA
64 TGAAGGTATTTATTCTAAAAAAATACCTTCAAAAATTATGAACAAAAATTAAAAGAAATTAGTGA
* * * *
8991777 AGGTATTTTTTTCTAGAATAAACACCTTCACTAACCATCTTAAATTTTGAGTAATGAAATATTGA
129 AGGTA-TTTTTTCTAAAATAAACACCTTCACTAACCATCTTAAAATTTAAATAATGAAATATTGA
* * * * **
8991842 AGGTATTTTTTCCTAGAAGACGTCTTTAATAATCTTAAAAATTTTAAAAAGAAAATTATTAAAGG
193 AGGTAGTTTTTCCTAGAAAAAGCCTTTAATAATCCCAAAAATTTTAAAAAGAAAATTATTAAAGG
* * * * **
8991907 CATTTGTTCTAAAACAACACTTTTAATAATTATGTACATAAATTAAAAAGAATTAGTGAAGGTGT
258 CATTTATTCTAAAAAAACACCTTCAATAATTATGTACATAAATTAAAAAGAATTAGTGAAGACGT
* * * *
8991972 TTTTTTAGAATAAATGCCTTCACTAACTGTCTTAAAATTTGAGTATTGAAA
323 TTTTCTAGAATAAACGCCTTCACTAACCGTCTTAAAATTTGAGTAATGAAA
8992023 TATTAAATGCATTTTTTACTAGAAGACACTTTTAATAATCTAAAAAATTTTAAAAAAAATTATTG
1 TATTAAATGCATTTTTTACTAGAAGACACTTTTAATAATCTAAAAAATTTTAAAAAAAATTATTG
* * * *
8992088 AAGGTATTTATTCTAAAAAAATACCTTTAATAATTATGAAC-AAAATTAAAAGGAATTATTGAAG
66 AAGGTATTTATTCTAAAAAAATACCTTCAAAAATTATGAACAAAAATTAAAAGAAATTAGTGAAG
** ** * **
8992152 GTA-TTTTTCTAAAATAAATGCCTTCACTAACTGTCTTAAAATTTAAATATTGGTATATTGAAGG
131 GTATTTTTTCTAAAATAAACACCTTCACTAACCATCTTAAAATTTAAATAATGAAATATTGAAGG
* * * * *
8992216 -CGTTTTTCATTAGAAAAAGCCTTTAATAATCCCAAAAATTTTTAAAAGAAAATTATTGAAGGCG
196 TAGTTTTTC-CTAGAAAAAGCCTTTAATAATCCCAAAAATTTTAAAAAGAAAATTATTAAAGGCA
*
8992280 TTTATTCTAAAAAAACACCTTCAATAATTATGTACATAAATTAAAAATAATTAGTGAAGACGTTT
260 TTTATTCTAAAAAAACACCTTCAATAATTATGTACATAAATTAAAAAGAATTAGTGAAGACGTTT
* *
8992345 TTCTAGAATAAACGCTTTCACTAACCGTCTTAAAATTTGAGTAATGGAA
325 TTCTAGAATAAACGCCTTCACTAACCGTCTTAAAATTTGAGTAATGAAA
* * * * * * * *
8992394 TATT-GATGGTATTTTTCATTAGAAGACGCCTTTAATAATCCCAAAAATATTTTTAAAAAAATTA
1 TATTAAAT-GCATTTTTTACTAGAAGACACTTTTAATAAT-CTAAAAA-ATTTTAAAAAAAATTA
8992458 TTGAAGGTATTT
63 TTGAAGGTATTT
8992470 TTTTAGAATA
Statistics
Matches: 389, Mismatches: 54, Indels: 11
0.86 0.12 0.02
Matches are distributed among these distances:
370 8 0.02
371 227 0.58
372 6 0.02
373 51 0.13
374 45 0.12
375 8 0.02
376 44 0.11
ACGTcount: A:0.43, C:0.10, G:0.11, T:0.37
Consensus pattern (373 bp):
TATTAAATGCATTTTTTACTAGAAGACACTTTTAATAATCTAAAAAATTTTAAAAAAAATTATTG
AAGGTATTTATTCTAAAAAAATACCTTCAAAAATTATGAACAAAAATTAAAAGAAATTAGTGAAG
GTATTTTTTCTAAAATAAACACCTTCACTAACCATCTTAAAATTTAAATAATGAAATATTGAAGG
TAGTTTTTCCTAGAAAAAGCCTTTAATAATCCCAAAAATTTTAAAAAGAAAATTATTAAAGGCAT
TTATTCTAAAAAAACACCTTCAATAATTATGTACATAAATTAAAAAGAATTAGTGAAGACGTTTT
TCTAGAATAAACGCCTTCACTAACCGTCTTAAAATTTGAGTAATGAAA
Found at i:8992457 original size:125 final size:126
Alignment explanation
Indices: 8992320--8992557 Score: 343
Period size: 125 Copynumber: 1.9 Consensus size: 126
8992310 TGTACATAAA
* * *
8992320 TTAAAAATAATTAGTGAAGACGTTTTTCTAGAATAAACGCTTTCACTAACCGTCTTAAAATTTGA
1 TTAAAAATAATTAGTGAAGACATTTTTCTAGAATAAACACATTCACTAACCGTCTTAAAATTTGA
* * * * *
8992385 GTAATGGAATATTGATGGTATTTTTCATTAGAAGACGCCTTTAATAATCCCAAAAATATTT
66 GCAATGAAATATTGAAGGTATTTTTCACTAGAAGACACCTTTAATAATCCCAAAAATATTT
* ** * *
8992446 TTAAAAA-AATTATTGAAGGTATTTTTTTAGAATAAACACATTCACTAACTGTCTTAAAATTTGA
1 TTAAAAATAATTAGTGAAGACATTTTTCTAGAATAAACACATTCACTAACCGTCTTAAAATTTGA
*
8992510 GCAGTGAAATATTGAAGGTATTTTTCACTAGAAGACACCTTTAATAAT
66 GCAATGAAATATTGAAGGTATTTTTCACTAGAAGACACCTTTAATAAT
8992558 TTTTTCAAAA
Statistics
Matches: 98, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
125 91 0.93
126 7 0.07
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.37
Consensus pattern (126 bp):
TTAAAAATAATTAGTGAAGACATTTTTCTAGAATAAACACATTCACTAACCGTCTTAAAATTTGA
GCAATGAAATATTGAAGGTATTTTTCACTAGAAGACACCTTTAATAATCCCAAAAATATTT
Found at i:9000581 original size:34 final size:34
Alignment explanation
Indices: 9000543--9000647 Score: 111
Period size: 34 Copynumber: 3.1 Consensus size: 34
9000533 ATAGTGACAA
* *
9000543 TTTTTAGATACAAACATCGTTAATATAACGGTAT
1 TTTTTAGATACAAACGTCGTTAATATAACGATAT
* ** *
9000577 TTTTTAGATACAAATGTTATTAATATAGCGATAT
1 TTTTTAGATACAAACGTCGTTAATATAACGATAT
* * * **
9000611 TTTTCAAATACAAACGTCGCTAATATAATAATAT
1 TTTTTAGATACAAACGTCGTTAATATAACGATAT
9000645 TTT
1 TTT
9000648 ATAAAAAACA
Statistics
Matches: 56, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
34 56 1.00
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (34 bp):
TTTTTAGATACAAACGTCGTTAATATAACGATAT
Found at i:9000646 original size:68 final size:68
Alignment explanation
Indices: 9000514--9000647 Score: 153
Period size: 68 Copynumber: 2.0 Consensus size: 68
9000504 GGTGTCTCAA
* * * **
9000514 AGATACAAACGCTATTAAAATAGTGACAATTTTTAGATACAAACATCGTTAATATAACGGTATTT
1 AGATACAAACGCTATTAAAATAGCGACAATTTTTAAATACAAACATCGCTAATATAACAATATTT
9000579 TTT
66 TTT
* * * * * *
9000582 AGATACAAATGTTATTAATATAGCGA-TATTTTTCAAATACAAACGTCGCTAATATAATAATATT
1 AGATACAAACGCTATTAAAATAGCGACAATTTTT-AAATACAAACATCGCTAATATAACAATATT
9000646 TT
65 TT
9000648 ATAAAAAACA
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
67 6 0.11
68 48 0.89
ACGTcount: A:0.42, C:0.11, G:0.10, T:0.37
Consensus pattern (68 bp):
AGATACAAACGCTATTAAAATAGCGACAATTTTTAAATACAAACATCGCTAATATAACAATATTT
TTT
Found at i:9001139 original size:17 final size:16
Alignment explanation
Indices: 9001117--9001149 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
9001107 AAAATGTTTT
9001117 GATATTTTATTTGAATA
1 GATATTTTATTT-AATA
9001134 GATATTTTATTTAATA
1 GATATTTTATTTAATA
9001150 TTCTAACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (16 bp):
GATATTTTATTTAATA
Found at i:9003691 original size:3 final size:3
Alignment explanation
Indices: 9003673--9003712 Score: 64
Period size: 3 Copynumber: 13.3 Consensus size: 3
9003663 TTATGTAAAA
9003673 ATT ATT GATT -TT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
9003713 AATCATCAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 2 0.06
3 30 0.86
4 3 0.09
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:9022349 original size:2 final size:2
Alignment explanation
Indices: 9022342--9022385 Score: 72
Period size: 2 Copynumber: 22.5 Consensus size: 2
9022332 CTACATTTAG
*
9022342 CT CT CT CT CT CT CT CT CT CT CT CT -T CT CT CT TT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
9022383 CT C
1 CT C
9022386 GCCTTTGATG
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
CT
Found at i:9025461 original size:17 final size:17
Alignment explanation
Indices: 9025408--9025470 Score: 53
Period size: 17 Copynumber: 3.8 Consensus size: 17
9025398 TTTAGTCGGG
9025408 ATTTTAATTAA-TT-TTA
1 ATTTT-ATTAATTTATTA
*
9025424 ATTTTA--AATTTTATTTT
1 ATTTTATTAA-TTTA-TTA
9025441 ATTTTATTAATTTATTA
1 ATTTTATTAATTTATTA
*
9025458 ATTTTATTGATTT
1 ATTTTATTAATTT
9025471 TATTGACTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 11
0.73 0.06 0.21
Matches are distributed among these distances:
13 2 0.05
15 3 0.08
16 5 0.13
17 22 0.58
18 4 0.11
19 2 0.05
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (17 bp):
ATTTTATTAATTTATTA
Found at i:9025470 original size:26 final size:26
Alignment explanation
Indices: 9025421--9025474 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
9025411 TTAATTAATT
*
9025421 TTAATTTTAAATTTTATTTTATTTTA
1 TTAATTTTAAATTTTATTTGATTTTA
*
9025447 TTAATTTATTAATTTTA-TTGATTTTA
1 TTAATTT-TAAATTTTATTTGATTTTA
9025473 TT
1 TT
9025475 GACTAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 17 0.68
27 8 0.32
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.69
Consensus pattern (26 bp):
TTAATTTTAAATTTTATTTGATTTTA
Found at i:9026216 original size:27 final size:24
Alignment explanation
Indices: 9026160--9026221 Score: 88
Period size: 24 Copynumber: 2.5 Consensus size: 24
9026150 TAAAAAATAA
9026160 TAAAAATAATTATTATAATTGTAAT
1 TAAAAA-AATTATTATAATTGTAAT
*
9026185 TAAAAAAATTATTATAATTGTTAT
1 TAAAAAAATTATTATAATTGTAAT
9026209 TGAGAAAAAATTA
1 T-A-AAAAAATTA
9026222 ATAAAAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
24 18 0.53
25 7 0.21
26 9 0.26
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.40
Consensus pattern (24 bp):
TAAAAAAATTATTATAATTGTAAT
Found at i:9027152 original size:7 final size:7
Alignment explanation
Indices: 9027137--9027184 Score: 59
Period size: 7 Copynumber: 7.3 Consensus size: 7
9027127 AAATATTTTT
9027137 AATATTTA
1 AATA-TTA
9027145 AATATTA
1 AATATTA
9027152 AA-ATT-
1 AATATTA
9027157 AATA--A
1 AATATTA
9027162 AATATTA
1 AATATTA
9027169 AATATTA
1 AATATTA
9027176 AATATTA
1 AATATTA
9027183 AA
1 AA
9027185 ATAAATTAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
5 6 0.17
6 4 0.11
7 22 0.61
8 4 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (7 bp):
AATATTA
Found at i:9027180 original size:31 final size:33
Alignment explanation
Indices: 9027137--9027197 Score: 99
Period size: 31 Copynumber: 1.9 Consensus size: 33
9027127 AAATATTTTT
*
9027137 AATATTTAAATATTAAAATTAA-TAAAATATTA
1 AATATTTAAATATTAAAATAAATTAAAATATTA
9027169 AATA-TTAAATATTAAAATAAATTAAAATA
1 AATATTTAAATATTAAAATAAATTAAAATA
9027198 ATTTTAATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (33 bp):
AATATTTAAATATTAAAATAAATTAAAATATTA
Found at i:9032074 original size:35 final size:34
Alignment explanation
Indices: 9032026--9032093 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
9032016 AAAAATATAT
* *
9032026 ATTTTTATCATAATGGGACAAAGCCCATTTGCTTC
1 ATTTTTATCATAAT-GGACAAAACACATTTGCTTC
* * *
9032061 ATTTTTTTTATAATGGATAAAACACATTTGCTT
1 ATTTTTATCATAATGGACAAAACACATTTGCTT
9032094 TATTACTTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.43
Consensus pattern (34 bp):
ATTTTTATCATAATGGACAAAACACATTTGCTTC
Found at i:9032132 original size:28 final size:29
Alignment explanation
Indices: 9032063--9032129 Score: 82
Period size: 33 Copynumber: 2.2 Consensus size: 29
9032053 TTTGCTTCAT
*
9032063 TTTTTTTATAATGGATAAAACACATTTGC
1 TTTTTTTATAATAGATAAAACACATTTGC
9032092 TTTATTACTTATAATAAGATAAAACACATTT-C
1 TTT-TT--TTATAAT-AGATAAAACACATTTGC
9032124 TTTTTT
1 TTTTTT
9032130 ATACAAAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
29 4 0.12
30 2 0.06
31 2 0.06
32 11 0.33
33 14 0.42
ACGTcount: A:0.36, C:0.10, G:0.06, T:0.48
Consensus pattern (29 bp):
TTTTTTTATAATAGATAAAACACATTTGC
Found at i:9035423 original size:20 final size:20
Alignment explanation
Indices: 9035382--9035423 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
9035372 AATAGAAAAA
* *
9035382 ATAAAGAAGCAACCTATGCC
1 ATAAAGAAGCAACCAATACC
9035402 ATAAAGAAG-ACACCAATACC
1 ATAAAGAAGCA-ACCAATACC
9035422 AT
1 AT
9035424 TTCATAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 1 0.05
20 18 0.95
ACGTcount: A:0.50, C:0.24, G:0.12, T:0.14
Consensus pattern (20 bp):
ATAAAGAAGCAACCAATACC
Found at i:9035639 original size:18 final size:18
Alignment explanation
Indices: 9035616--9035660 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
9035606 GTTCCACCAA
9035616 AACAAAATAAATAACAAG
1 AACAAAATAAATAACAAG
** *
9035634 AACAAAATTCATAACAAT
1 AACAAAATAAATAACAAG
*
9035652 AAAAAAATA
1 AACAAAATA
9035661 TAAAAAATAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.71, C:0.11, G:0.02, T:0.16
Consensus pattern (18 bp):
AACAAAATAAATAACAAG
Found at i:9035849 original size:22 final size:22
Alignment explanation
Indices: 9035824--9035873 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 22
9035814 AAAACTCTAC
* *
9035824 AAAAAGTTTACAA-AAGCAAAAA
1 AAAAAGCTTA-AACAAGAAAAAA
9035846 AAAAAGCTTAAATCAAGAAAAAA
1 AAAAAGCTTAAA-CAAGAAAAAA
9035869 AAAAA
1 AAAAA
9035874 AAGGAAACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 2 0.08
22 9 0.38
23 13 0.54
ACGTcount: A:0.72, C:0.08, G:0.08, T:0.12
Consensus pattern (22 bp):
AAAAAGCTTAAACAAGAAAAAA
Found at i:9036511 original size:22 final size:22
Alignment explanation
Indices: 9036486--9036531 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
9036476 AACCTAAAGC
*
9036486 AATAAAAGAGATA-AAAAAATAA
1 AATAAAA-AGATAGAAAAAAAAA
*
9036508 AATAAAAATATAGAAAAAAAAA
1 AATAAAAAGATAGAAAAAAAAA
9036530 AA
1 AA
9036532 GCAACATATG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (22 bp):
AATAAAAAGATAGAAAAAAAAA
Found at i:9039970 original size:20 final size:20
Alignment explanation
Indices: 9039929--9039970 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
9039919 AATAAGAAAA
* *
9039929 ATAAAGAAACAACCTATGCC
1 ATAAAGAAACAACCAATACC
9039949 ATAAAGAAGAC-ACCAATACC
1 ATAAAGAA-ACAACCAATACC
9039969 AT
1 AT
9039971 TTCATAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 17 0.89
21 2 0.11
ACGTcount: A:0.52, C:0.24, G:0.10, T:0.14
Consensus pattern (20 bp):
ATAAAGAAACAACCAATACC
Found at i:9041337 original size:17 final size:18
Alignment explanation
Indices: 9041301--9041342 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
9041291 CCACCAAAAC
9041301 AAAATACATAACAAGAAA
1 AAAATACATAACAAGAAA
*
9041319 AAAATTCATAAC-AGTAAA
1 AAAATACATAACAAG-AAA
9041337 AAAATA
1 AAAATA
9041343 TAAAAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 2 0.10
18 19 0.90
ACGTcount: A:0.69, C:0.10, G:0.05, T:0.17
Consensus pattern (18 bp):
AAAATACATAACAAGAAA
Found at i:9042148 original size:25 final size:24
Alignment explanation
Indices: 9042081--9042211 Score: 68
Period size: 25 Copynumber: 5.3 Consensus size: 24
9042071 TGTTGAAAAT
*
9042081 ATAAAAAAAAT-T-ATTTTTTATA
1 ATAAAAAAAATATGATTTTTTAAA
** * * *
9042103 ATTCAACAAAGATTATGTTTTTAAA
1 ATAAAAAAAATATGAT-TTTTTAAA
9042128 ATAAAAAAAATATGATCTTTTTTAAAA
1 ATAAAAAAAATATGA--TTTTTT-AAA
** * *
9042155 ATATGAAAATTATTATTTTTTAAA
1 ATAAAAAAAATATGATTTTTTAAA
** * * *
9042179 ATTTAATAAATACGATATTTTTAAG
1 ATAAAAAAAATATGAT-TTTTTAAA
9042204 ATAAAAAA
1 ATAAAAAA
9042212 TATAGTCTTT
Statistics
Matches: 78, Mismatches: 24, Indels: 11
0.69 0.21 0.10
Matches are distributed among these distances:
22 7 0.09
23 1 0.01
24 15 0.19
25 35 0.45
26 5 0.06
27 15 0.19
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (24 bp):
ATAAAAAAAATATGATTTTTTAAA
Found at i:9042163 original size:27 final size:25
Alignment explanation
Indices: 9042076--9042179 Score: 70
Period size: 25 Copynumber: 4.1 Consensus size: 25
9042066 ATTTTTGTTG
9042076 AAAATATAAAAAAA-ATTATTTTTT-
1 AAAATA-AAAAAAATATTATTTTTTA
* ** * *
9042100 ATAATTCAACAAAGATTATGTTTTT-
1 AAAATAAAAAAAATATTAT-TTTTTA
*
9042125 AAAATAAAAAAAATATGATCTTTTTTA
1 AAAATAAAAAAAATAT--TATTTTTTA
** *
9042152 AAAATATGAAAATTATTATTTTTTA
1 AAAATAAAAAAAATATTATTTTTTA
9042177 AAA
1 AAA
9042180 TTTAATAAAT
Statistics
Matches: 61, Mismatches: 14, Indels: 9
0.73 0.17 0.11
Matches are distributed among these distances:
23 5 0.08
24 9 0.15
25 27 0.44
26 5 0.08
27 15 0.25
ACGTcount: A:0.52, C:0.03, G:0.04, T:0.41
Consensus pattern (25 bp):
AAAATAAAAAAAATATTATTTTTTA
Found at i:9042446 original size:67 final size:72
Alignment explanation
Indices: 9042343--9042500 Score: 184
Period size: 74 Copynumber: 2.2 Consensus size: 72
9042333 TGAAAAAACG
* * *
9042343 ATGTTTCTAAAAT-AAAAATGTAATTTTTGTTGAAAACAT-AAAA-A-A-ATGTTAAAA-TTAAC
1 ATGTTTTTAAAATAAAAAACGTAATTTTTGTTAAAAACATGAAAATATATATGTTAAAATTTAAC
9042402 AAAGATA
66 AAAGATA
** *
9042409 ATGTTTTTAAAATAAAAAACGTGCTTTTTGTTAAAAACATGAAAATTATTATATTTTAAAATTTA
1 ATGTTTTTAAAATAAAAAACGTAATTTTTGTTAAAAACATGAAAA-TA-TATATGTTAAAATTTA
*
9042474 ACAAAGGTA
64 ACAAAGATA
*
9042483 ATGTTTTTAAGATAAAAA
1 ATGTTTTTAAAATAAAAA
9042501 TACAGTTTTT
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
66 12 0.16
67 22 0.29
68 4 0.05
70 1 0.01
72 1 0.01
73 8 0.11
74 28 0.37
ACGTcount: A:0.49, C:0.04, G:0.09, T:0.37
Consensus pattern (72 bp):
ATGTTTTTAAAATAAAAAACGTAATTTTTGTTAAAAACATGAAAATATATATGTTAAAATTTAAC
AAAGATA
Found at i:9047227 original size:22 final size:22
Alignment explanation
Indices: 9047180--9047227 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
9047170 TTAAAATTGA
* *
9047180 TGATATGACATTTTAACTTTTT
1 TGATATGACATTTTAACTTATG
**
9047202 TGATATGACATTTTTGCTTATG
1 TGATATGACATTTTAACTTATG
9047224 TGAT
1 TGAT
9047228 CATTAACTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.25, C:0.08, G:0.15, T:0.52
Consensus pattern (22 bp):
TGATATGACATTTTAACTTATG
Found at i:9047621 original size:19 final size:19
Alignment explanation
Indices: 9047593--9047629 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
9047583 TCTCTTTATC
* *
9047593 ATTTTTTTTATTTATTTTG
1 ATTTTATTTATTCATTTTG
9047612 ATTTTATTTATTCATTTT
1 ATTTTATTTATTCATTTT
9047630 TTGTTAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.76
Consensus pattern (19 bp):
ATTTTATTTATTCATTTTG
Found at i:9047702 original size:17 final size:16
Alignment explanation
Indices: 9047658--9047718 Score: 59
Period size: 17 Copynumber: 3.6 Consensus size: 16
9047648 GATATTTTTG
9047658 AAATATAAAAAATAAA
1 AAATATAAAAAATAAA
*
9047674 AAATAGATAAAAATAAA
1 AAATATA-AAAAATAAA
* *
9047691 AAATTTTAAAAATGACAA
1 AAATATAAAAAAT-A-AA
*
9047709 AAACATAAAA
1 AAATATAAAA
9047719 GTTAGGTCAA
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
16 12 0.34
17 14 0.40
18 9 0.26
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.20
Consensus pattern (16 bp):
AAATATAAAAAATAAA
Found at i:9062773 original size:25 final size:24
Alignment explanation
Indices: 9062745--9062792 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
9062735 TTTTGCTAGT
*
9062745 TTTTTTACTTATTTACTTAATTATA
1 TTTTATACTTATTTA-TTAATTATA
* *
9062770 TTTTATATTTATTTATTCATTAT
1 TTTTATACTTATTTATTAATTAT
9062793 TTATTTATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (24 bp):
TTTTATACTTATTTATTAATTATA
Found at i:9066130 original size:28 final size:28
Alignment explanation
Indices: 9066081--9066137 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
9066071 TTTTTAAATT
* * *
9066081 TTGGATGTGAGTCTTTCAAATGTGAATA
1 TTGGATGTGAATATTTCAAATGCGAATA
**
9066109 TTGGATGTGAATATTTTGAATGCGAATA
1 TTGGATGTGAATATTTCAAATGCGAATA
9066137 T
1 T
9066138 GAATCTTTCT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.30, C:0.05, G:0.25, T:0.40
Consensus pattern (28 bp):
TTGGATGTGAATATTTCAAATGCGAATA
Found at i:9066141 original size:21 final size:21
Alignment explanation
Indices: 9066116--9066156 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
9066106 ATATTGGATG
9066116 TGAATATTT-TGAATGCGAATA
1 TGAATATTTCT-AATGCGAATA
*
9066137 TGAATCTTTCTAATGCGAAT
1 TGAATATTTCTAATGCGAAT
9066157 CTTTGAGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (21 bp):
TGAATATTTCTAATGCGAATA
Found at i:9067639 original size:18 final size:17
Alignment explanation
Indices: 9067600--9067644 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
9067590 TTTTTTTTAC
9067600 TTATTTATTTATTCATTA
1 TTATTT-TTTATTCATTA
* *
9067618 TTATTTTTTATTTAGTTT
1 TTATTTTTTATTCA-TTA
9067636 TTATTTTTT
1 TTATTTTTT
9067645 GACCTATTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 7 0.29
18 17 0.71
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (17 bp):
TTATTTTTTATTCATTA
Found at i:9070352 original size:24 final size:23
Alignment explanation
Indices: 9070308--9070354 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
9070298 CCTAACATTT
9070308 TTATCTTTGCTTTTTTCCTTTGTC
1 TTATCTTT-CTTTTTTCCTTTGTC
9070332 TTATCTTT-TTTGTTTCACTTTGT
1 TTATCTTTCTTT-TTTC-CTTTGT
9070355 AAATCGTAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 3 0.14
23 4 0.19
24 14 0.67
ACGTcount: A:0.06, C:0.17, G:0.09, T:0.68
Consensus pattern (23 bp):
TTATCTTTCTTTTTTCCTTTGTC
Found at i:9073881 original size:3 final size:3
Alignment explanation
Indices: 9073873--9073917 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
9073863 GAATCTAAAT
9073873 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
9073918 ATTGAATTTG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:9076681 original size:12 final size:13
Alignment explanation
Indices: 9076656--9076691 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
9076646 TTTATGTAAT
*
9076656 TTTTAAATATATA
1 TTTTAAATAAATA
9076669 TTTT-AATAAATA
1 TTTTAAATAAATA
9076681 TTTTAAATAAA
1 TTTTAAATAAA
9076692 AATATATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TTTTAAATAAATA
Found at i:9085874 original size:10 final size:10
Alignment explanation
Indices: 9085861--9085888 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
9085851 TGGAACTAAT
9085861 GTGCAACTCA
1 GTGCAACTCA
9085871 GTGCAACTCA
1 GTGCAACTCA
9085881 GTGCAACT
1 GTGCAACT
9085889 TATCACTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (10 bp):
GTGCAACTCA
Found at i:9087800 original size:2 final size:2
Alignment explanation
Indices: 9087793--9087827 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
9087783 ACAACAAAAT
9087793 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9087828 TGAATATGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:9089782 original size:26 final size:24
Alignment explanation
Indices: 9089732--9089785 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
9089722 TGAAGAAATC
* *
9089732 ATATCTAAGAGTCATTCTGAGATA
1 ATATATAAGAGTCATTCTGACATA
9089756 ATATATAAGAGTCATTCTGAACCATA
1 ATATATAAGAGTCATTCTG-A-CATA
9089782 ATAT
1 ATAT
9089786 CAAATCCATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 18 0.69
25 1 0.04
26 7 0.27
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (24 bp):
ATATATAAGAGTCATTCTGACATA
Done.