Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15507587
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 65 of 91
Found at i:10813292 original size:13 final size:12
Alignment explanation
Indices: 10813267--10813316 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
10813257 TTATTTATCC
*
10813267 TTTTTATACTTT
1 TTTTTATAATTT
10813279 TTTTTATTAA--T
1 TTTTTA-TAATTT
*
10813290 TTTTTAAAATTT
1 TTTTTATAATTT
*
10813302 TTTTAATAATTT
1 TTTTTATAATTT
10813314 TTT
1 TTT
10813317 ATTTGTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
10 2 0.06
11 7 0.23
12 20 0.65
13 2 0.06
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (12 bp):
TTTTTATAATTT
Found at i:10813300 original size:10 final size:11
Alignment explanation
Indices: 10813278--10813317 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
10813268 TTTTATACTT
*
10813278 TTTTTTATTAA
1 TTTTTTAATAA
10813289 TTTTTTAA-AA
1 TTTTTTAATAA
10813299 TTTTTTTAATAA
1 -TTTTTTAATAA
10813311 TTTTTTA
1 TTTTTTA
10813318 TTTGTAATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
10 2 0.08
11 22 0.85
12 2 0.08
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTTTAATAA
Found at i:10813611 original size:18 final size:19
Alignment explanation
Indices: 10813564--10813613 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 19
10813554 ATCATGCATG
*
10813564 AATATA-AAAAAAATACTC
1 AATATATAAAAAAATAATC
10813582 AA-A-ATAACAAAAATAAT-
1 AATATATAA-AAAAATAATC
10813599 AATATATAAAAAAAT
1 AATATATAAAAAAAT
10813614 TCAAAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
16 1 0.04
17 5 0.19
18 17 0.63
19 4 0.15
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.22
Consensus pattern (19 bp):
AATATATAAAAAAATAATC
Found at i:10815025 original size:110 final size:110
Alignment explanation
Indices: 10814882--10815149 Score: 353
Period size: 110 Copynumber: 2.4 Consensus size: 110
10814872 CAACACTACG
* *
10814882 AATCGAAATTATG-CCTAGAGGTCTTAGGAATCATGCCCGGAGGTCTTACAGAATCGATTGGGAC
1 AATCGAAATTATGCCCGA-AGGTCTTAGAAATCATGCCCGGAGGTCTTACAGAATCGATTGGGAC
* * *
10814946 AACATCGCAAGTTGAAAAATAATGAATCGATCAAGATAACA-CTGTA
65 AACACCGCAAGTTGAAAAATAAGGAATCGATCAAGATAACACCT-CA
* **
10814992 AATC-AAATTTATGCTCGAAGGTCTTAGAAATCATGCCTAGAGGTCTTACAGAATCGATTGGGAC
1 AATCGAAA-TTATGCCCGAAGGTCTTAGAAATCATGCCCGGAGGTCTTACAGAATCGATTGGGAC
* * *
10815056 AACACCGTAAGTTGAAAAATAAGGAATCGATTAGGATAACACCTCA
65 AACACCGCAAGTTGAAAAATAAGGAATCGATCAAGATAACACCTCA
* * * *
10815102 AATCGAAATTATGCCCGGAGGTCTCAAAAATCATGGCCGGAGGTCTTA
1 AATCGAAATTATGCCCGAAGGTCTTAGAAATCATGCCCGGAGGTCTTA
10815150 GAAATTATGC
Statistics
Matches: 136, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
109 3 0.02
110 126 0.93
111 7 0.05
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.24
Consensus pattern (110 bp):
AATCGAAATTATGCCCGAAGGTCTTAGAAATCATGCCCGGAGGTCTTACAGAATCGATTGGGACA
ACACCGCAAGTTGAAAAATAAGGAATCGATCAAGATAACACCTCA
Found at i:10815132 original size:22 final size:22
Alignment explanation
Indices: 10815107--10815169 Score: 81
Period size: 22 Copynumber: 2.9 Consensus size: 22
10815097 CCTCAAATCG
10815107 AAATTATGCCCGGAGGTCTCAA
1 AAATTATGCCCGGAGGTCTCAA
* * * *
10815129 AAATCATGGCCGGAGGTCTTAG
1 AAATTATGCCCGGAGGTCTCAA
*
10815151 AAATTATGCTCGGAGGTCT
1 AAATTATGCCCGGAGGTCT
10815170 TACAGAATCG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (22 bp):
AAATTATGCCCGGAGGTCTCAA
Found at i:10815153 original size:132 final size:132
Alignment explanation
Indices: 10815002--10815389 Score: 521
Period size: 132 Copynumber: 2.9 Consensus size: 132
10814992 AATCAAATTT
* *
10815002 ATGCTCGAAGGTCTTAGAAATCATGCCTAGAGGTCTTACAGAATCGATTGGGACAACACCGTAAG
1 ATGCTCGGAGGTCTTAGAAATCATGCCTAGAGGTCTTACAGAATCGACTGGGACAACACCGTAAG
* * * * *
10815067 TTGAAAAATAAGGAATCGATTAGGATAACACCTCAAATCGAAATTATGCCCGGAGGTCTCAAAAA
66 TCGAAAAATAATGAATCGATTGGGATAACACCTCGAATCGAATTTATGCCCGGAGGTCTCAAAAA
10815132 TC
131 TC
* * * *
10815134 ATGGC-CGGAGGTCTTAGAAATTATG-CTCGGAGGTCTTACAGAATCGACTGGAACAACACCGTT
1 AT-GCTCGGAGGTCTTAGAAATCATGCCT-AGAGGTCTTACAGAATCGACTGGGACAACACCGTA
* * * *
10815197 AGTCGAAAAATAATGAATCGATTGGGATAACA-CTACGAATTGAATTTATGCCAGGAGGTCTTAG
64 AGTCGAAAAATAATGAATCGATTGGGATAACACCT-CGAATCGAATTTATGCCCGGAGGTCTCAA
10815261 AAATC
128 AAATC
* * * *
10815266 ATGCTCGGAGGTCTTAGAAATCATGCCTAGAGTTCTTACAGAATCGACTGTGACAACACTGCAAG
1 ATGCTCGGAGGTCTTAGAAATCATGCCTAGAGGTCTTACAGAATCGACTGGGACAACACCGTAAG
* * * *
10815331 TCAAAAAATAATGAATTGATCGGGATAACACCGCGAATCGAATTTATGCCCGGAGGTCT
66 TCGAAAAATAATGAATCGATTGGGATAACACCTCGAATCGAATTTATGCCCGGAGGTCT
10815390 TATAGAATCG
Statistics
Matches: 221, Mismatches: 29, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
131 6 0.03
132 210 0.95
133 5 0.02
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.24
Consensus pattern (132 bp):
ATGCTCGGAGGTCTTAGAAATCATGCCTAGAGGTCTTACAGAATCGACTGGGACAACACCGTAAG
TCGAAAAATAATGAATCGATTGGGATAACACCTCGAATCGAATTTATGCCCGGAGGTCTCAAAAA
TC
Found at i:10815275 original size:22 final size:22
Alignment explanation
Indices: 10815250--10815291 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
10815240 ATTTATGCCA
10815250 GGAGGTCTTAGAAATCATGCTC
1 GGAGGTCTTAGAAATCATGCTC
10815272 GGAGGTCTTAGAAATCATGC
1 GGAGGTCTTAGAAATCATGC
10815292 CTAGAGTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.26
Consensus pattern (22 bp):
GGAGGTCTTAGAAATCATGCTC
Found at i:10815444 original size:88 final size:88
Alignment explanation
Indices: 10815288--10815479 Score: 276
Period size: 88 Copynumber: 2.2 Consensus size: 88
10815278 CTTAGAAATC
* * * *
10815288 ATGCCTAGAGTTCTTACAGAATCGACTGTGACAACACTGCAAGTCAAAAAATAATGAATTGATCG
1 ATGCCCAGAGGTCTTACAGAATCGACTGTGACAACACCGCAAGTCAAAAAATAATGAATCGATCG
*
10815353 GGATAACACCGCGAATCGAATTT
66 GGATAACACCACGAATCGAATTT
* * * * *
10815376 ATGCCCGGAGGTCTTATAGAATCGACTGTGATAACACCGTAAGTCAAAAAATAATGAATCGATTG
1 ATGCCCAGAGGTCTTACAGAATCGACTGTGACAACACCGCAAGTCAAAAAATAATGAATCGATCG
*
10815441 GGATAACATCACGAATCGAATTT
66 GGATAACACCACGAATCGAATTT
*
10815464 ATGCCTAGAGGTCTTA
1 ATGCCCAGAGGTCTTA
10815480 AAGATTATGC
Statistics
Matches: 91, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
88 91 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.25
Consensus pattern (88 bp):
ATGCCCAGAGGTCTTACAGAATCGACTGTGACAACACCGCAAGTCAAAAAATAATGAATCGATCG
GGATAACACCACGAATCGAATTT
Found at i:10815490 original size:22 final size:22
Alignment explanation
Indices: 10815462--10815503 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
10815452 CGAATCGAAT
*
10815462 TTATGCCTAGAGGTCTTAAAGA
1 TTATGCCCAGAGGTCTTAAAGA
10815484 TTATGCCCAGAGGTCTTAAA
1 TTATGCCCAGAGGTCTTAAA
10815504 AATCAACATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (22 bp):
TTATGCCCAGAGGTCTTAAAGA
Found at i:10815961 original size:9 final size:9
Alignment explanation
Indices: 10815947--10815972 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
10815937 AAATCATGTT
10815947 TTTCTTTTC
1 TTTCTTTTC
10815956 TTTCTTTTC
1 TTTCTTTTC
10815965 TTTCTTTT
1 TTTCTTTT
10815973 ATATATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTCTTTTC
Found at i:10817241 original size:13 final size:13
Alignment explanation
Indices: 10817223--10817247 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10817213 TATTTTCTCT
10817223 TTTTTATTTTTTA
1 TTTTTATTTTTTA
10817236 TTTTTATTTTTT
1 TTTTTATTTTTT
10817248 GAATTCTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTATTTTTTA
Found at i:10817643 original size:1 final size:1
Alignment explanation
Indices: 10817637--10817717 Score: 81
Period size: 1 Copynumber: 81.0 Consensus size: 1
10817627 AAATGTTCCC
* * * *** * *
10817637 TTTTTTTTTCTTTTTGTTTTTTTTTTTTTTTTTTTTTTATTTTTTGCCTTTTTTTTTGTTTTTGT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
10817702 TTTTTTTTTTTGTTTT
1 TTTTTTTTTTTTTTTT
10817718 GTGATGCCCC
Statistics
Matches: 65, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 65 1.00
ACGTcount: A:0.01, C:0.04, G:0.06, T:0.89
Consensus pattern (1 bp):
T
Found at i:10817661 original size:19 final size:19
Alignment explanation
Indices: 10817637--10817717 Score: 99
Period size: 19 Copynumber: 4.1 Consensus size: 19
10817627 AAATGTTCCC
*
10817637 TTTTTTTTTCTTTTTGTTT
1 TTTTTTTTTTTTTTTGTTT
*
10817656 TTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTGTTT
10817675 ATTTTTTGCCTTTTTTTTTGTTT
1 -TTTTTT---TTTTTTTTTGTTT
*
10817698 TTGTTTTTTTTTTTTGTTT
1 TTTTTTTTTTTTTTTGTTT
10817717 T
1 T
10817718 GTGATGCCCC
Statistics
Matches: 54, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
19 31 0.57
20 6 0.11
22 5 0.09
23 12 0.22
ACGTcount: A:0.01, C:0.04, G:0.06, T:0.89
Consensus pattern (19 bp):
TTTTTTTTTTTTTTTGTTT
Found at i:10817718 original size:18 final size:17
Alignment explanation
Indices: 10817637--10817719 Score: 94
Period size: 18 Copynumber: 4.6 Consensus size: 17
10817627 AAATGTTCCC
*
10817637 TTTTTTTTTCTTTTTGTT
1 TTTTTTTTTGTTTTT-TT
*
10817655 TTTTTTTTTTTTTTTTT
1 TTTTTTTTTGTTTTTTT
*
10817672 TTTATTTTTTGCCTTTTTT
1 TTT-TTTTTTG-TTTTTTT
*
10817691 TTTGTTTTTGTTTTTTT
1 TTTTTTTTTGTTTTTTT
10817708 TTTTTGTTTTGT
1 TTTTT-TTTTGT
10817720 GATGCCCCAT
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
17 15 0.27
18 32 0.57
19 9 0.16
ACGTcount: A:0.01, C:0.04, G:0.07, T:0.88
Consensus pattern (17 bp):
TTTTTTTTTGTTTTTTT
Found at i:10818299 original size:7 final size:7
Alignment explanation
Indices: 10818279--10818331 Score: 63
Period size: 7 Copynumber: 7.4 Consensus size: 7
10818269 CAAAAGAAAA
10818279 TTTCTTT
1 TTTCTTT
10818286 TTCTCTTT
1 TT-TCTTT
10818294 TTTCTTT
1 TTTCTTT
*
10818301 TTT-TGAT
1 TTTCT-TT
*
10818308 TTTGTTT
1 TTTCTTT
10818315 TTTCTTT
1 TTTCTTT
10818322 TTTCTTT
1 TTTCTTT
10818329 TTT
1 TTT
10818332 TTTAAATCTT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
6 1 0.03
7 31 0.77
8 8 0.20
ACGTcount: A:0.02, C:0.11, G:0.04, T:0.83
Consensus pattern (7 bp):
TTTCTTT
Found at i:10821436 original size:2 final size:2
Alignment explanation
Indices: 10821429--10821458 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
10821419 GTGATACATC
10821429 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10821459 ATAGAAGTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10821951 original size:19 final size:20
Alignment explanation
Indices: 10821924--10821963 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
10821914 TCATATCCTA
*
10821924 ATTTTAATTATTTA-TTATT
1 ATTTAAATTATTTATTTATT
10821943 ATTTAAATTATTTATTTATT
1 ATTTAAATTATTTATTTATT
10821963 A
1 A
10821964 CAATGGTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (20 bp):
ATTTAAATTATTTATTTATT
Found at i:10830770 original size:21 final size:22
Alignment explanation
Indices: 10830740--10830791 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
10830730 GATGTTTTTA
10830740 AATA-TTTATA-TTTAAAAAAT
1 AATATTTTATATTTTAAAAAAT
10830760 AATATTTTATATTTTAAAAAAT
1 AATATTTTATATTTTAAAAAAT
10830782 AATATTTTAT
1 AATATTTTAT
10830792 TAATTTCGGG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 4 0.13
21 6 0.20
22 20 0.67
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
AATATTTTATATTTTAAAAAAT
Found at i:10830805 original size:5 final size:5
Alignment explanation
Indices: 10830797--10830822 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
10830787 TTTATTAATT
10830797 TCGGG TCGGG TCGGG TCGGG TCGGG T
1 TCGGG TCGGG TCGGG TCGGG TCGGG T
10830823 ACGATTTACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.19, G:0.58, T:0.23
Consensus pattern (5 bp):
TCGGG
Found at i:10831117 original size:19 final size:18
Alignment explanation
Indices: 10831079--10831127 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 18
10831069 TATATTAATA
10831079 TATTTTATTTATAATTTTTT
1 TATTTTATTT-TAA-TTTTT
*
10831099 TATTTTATTTTAGTTTTT
1 TATTTTATTTTAATTTTT
*
10831117 TAATTTATTTT
1 TATTTTATTTT
10831128 TAAAGTAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
18 15 0.56
19 2 0.07
20 10 0.37
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (18 bp):
TATTTTATTTTAATTTTT
Found at i:10833615 original size:30 final size:30
Alignment explanation
Indices: 10833554--10833626 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 30
10833544 TTAAGCTCTC
* * *
10833554 AAACATTTATTTTCATTCAATTGTATTTTT
1 AAACATTTATTTTCATTAAATTGAATCTTT
*
10833584 AAATATTTATTTTCA-TAAATTTGAATCTTT
1 AAACATTTATTTTCATTAAA-TTGAATCTTT
*
10833614 AAACATATATTTT
1 AAACATTTATTTT
10833627 TTCCATTGAG
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
29 3 0.08
30 33 0.92
ACGTcount: A:0.36, C:0.08, G:0.03, T:0.53
Consensus pattern (30 bp):
AAACATTTATTTTCATTAAATTGAATCTTT
Found at i:10834143 original size:90 final size:90
Alignment explanation
Indices: 10834042--10834218 Score: 282
Period size: 90 Copynumber: 2.0 Consensus size: 90
10834032 CATTTGGCAT
* * * **
10834042 ACAATTTTTTTGAACCAAATTATGGGAATCCTATTGCCTTTATACATATATCTTCGTCACTCATT
1 ACAAATTTTTTGAACCAAATCATGGGAATCCTATTGCCTTTAGACATATATCTTCACCACTCATT
10834107 GCTCTCATTCCAATCAATGTTCTAC
66 GCTCTCATTCCAATCAATGTTCTAC
*
10834132 ACAAATTTTTTGAACCAAATCATGGGAATCCTCTTGCCTTTAGACATATATCTTCACCACTCATT
1 ACAAATTTTTTGAACCAAATCATGGGAATCCTATTGCCTTTAGACATATATCTTCACCACTCATT
* *
10834197 GTTCTCATTCCAATCATTGTTC
66 GCTCTCATTCCAATCAATGTTC
10834219 CTTACTTATA
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
90 79 1.00
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (90 bp):
ACAAATTTTTTGAACCAAATCATGGGAATCCTATTGCCTTTAGACATATATCTTCACCACTCATT
GCTCTCATTCCAATCAATGTTCTAC
Found at i:10834698 original size:30 final size:31
Alignment explanation
Indices: 10834656--10834713 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
10834646 CGTTTCAAAA
*
10834656 AATTGTGTATGTCTAAATAAATACATATTTG
1 AATTGTGTATGTCTAAATAAATAAATATTTG
*
10834687 AATTGT-TATGTCTATATAAATAAATAT
1 AATTGTGTATGTCTAAATAAATAAATAT
10834714 CTATTTGGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 19 0.76
31 6 0.24
ACGTcount: A:0.41, C:0.05, G:0.10, T:0.43
Consensus pattern (31 bp):
AATTGTGTATGTCTAAATAAATAAATATTTG
Found at i:10834732 original size:34 final size:34
Alignment explanation
Indices: 10834669--10834753 Score: 93
Period size: 34 Copynumber: 2.5 Consensus size: 34
10834659 TGTGTATGTC
* *
10834669 TAAATAAATA-CATATTTGAATTGTTATGTCTATA
1 TAAATAAATATC-TATTTGAATGGTCATGTCTATA
* *
10834703 TAAATAAATATCTATTTGGATGGTCATGTCTGTA
1 TAAATAAATATCTATTTGAATGGTCATGTCTATA
*
10834737 CAAA-AAGATATCTATTT
1 TAAATAA-ATATCTATTT
10834754 TATTATAAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
33 2 0.05
34 41 0.93
35 1 0.02
ACGTcount: A:0.39, C:0.08, G:0.12, T:0.41
Consensus pattern (34 bp):
TAAATAAATATCTATTTGAATGGTCATGTCTATA
Found at i:10839892 original size:2 final size:2
Alignment explanation
Indices: 10839885--10839913 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
10839875 AAAATATTTC
10839885 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10839914 GACACACACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10843952 original size:4 final size:4
Alignment explanation
Indices: 10843943--10843976 Score: 68
Period size: 4 Copynumber: 8.5 Consensus size: 4
10843933 AGCTTCTGGA
10843943 TATG TATG TATG TATG TATG TATG TATG TATG TA
1 TATG TATG TATG TATG TATG TATG TATG TATG TA
10843977 GACACTCCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:10844122 original size:22 final size:23
Alignment explanation
Indices: 10844094--10844167 Score: 82
Period size: 23 Copynumber: 3.3 Consensus size: 23
10844084 TATCTACTTT
10844094 TTTTATATAT-TCTTT-TTATTTA
1 TTTTATATATATCTTTATT-TTTA
*
10844116 TTTTATATTTATCTTTATTTTTA
1 TTTTATATATATCTTTATTTTTA
* *
10844139 TTTTGATAT-TATATTTATCTTTA
1 TTTT-ATATATATCTTTATTTTTA
10844162 TTTTAT
1 TTTTAT
10844168 CCTTATTGAT
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
22 11 0.24
23 29 0.63
24 6 0.13
ACGTcount: A:0.23, C:0.04, G:0.01, T:0.72
Consensus pattern (23 bp):
TTTTATATATATCTTTATTTTTA
Found at i:10844130 original size:23 final size:23
Alignment explanation
Indices: 10844106--10844215 Score: 82
Period size: 23 Copynumber: 4.7 Consensus size: 23
10844096 TTATATATTC
*
10844106 TTTTTATTTATTTTATATTTATC
1 TTTTTATTTATTTTATATTTATA
10844129 TTTATT-TTTATTTTGATA-TTATA
1 TTT-TTATTTATTTT-ATATTTATA
* * **
10844152 TTTATCTTTATTTTATCCTTATTGA
1 TTTTTATTTATTTTATATTTA-T-A
* *
10844177 TTAGTTATTTA-TTTATTTTTATA
1 TT-TTTATTTATTTTATATTTATA
*
10844200 TTTTTATCTATTTTAT
1 TTTTTATTTATTTTAT
10844216 TTATTTTGAT
Statistics
Matches: 69, Mismatches: 10, Indels: 16
0.73 0.11 0.17
Matches are distributed among these distances:
22 9 0.13
23 37 0.54
24 7 0.10
25 11 0.16
26 5 0.07
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.70
Consensus pattern (23 bp):
TTTTTATTTATTTTATATTTATA
Found at i:10844132 original size:6 final size:5
Alignment explanation
Indices: 10844107--10844167 Score: 52
Period size: 6 Copynumber: 11.2 Consensus size: 5
10844097 TATATATTCT
*
10844107 TTTTA -TTTA TTTTA TATTTA TCTTTA TTTTTA TTTTGA TATTA TATTTA
1 TTTTA TTTTA TTTTA T-TTTA T-TTTA -TTTTA TTTT-A TTTTA T-TTTA
10844156 TCTTTA TTTTA T
1 T-TTTA TTTTA T
10844168 CCTTATTGAT
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
4 4 0.09
5 16 0.34
6 26 0.55
7 1 0.02
ACGTcount: A:0.23, C:0.03, G:0.02, T:0.72
Consensus pattern (5 bp):
TTTTA
Found at i:10844155 original size:29 final size:27
Alignment explanation
Indices: 10844106--10844165 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 27
10844096 TTATATATTC
*
10844106 TTTTTATTTATTTTATATTTATCTTTA
1 TTTTTATTTATATTATATTTATCTTTA
10844133 TTTTTATTTTGATATTATATTTATCTTTA
1 TTTTTA-TTT-ATATTATATTTATCTTTA
10844162 TTTT
1 TTTT
10844166 ATCCTTATTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 6 0.20
28 3 0.10
29 21 0.70
ACGTcount: A:0.22, C:0.03, G:0.02, T:0.73
Consensus pattern (27 bp):
TTTTTATTTATATTATATTTATCTTTA
Found at i:10844227 original size:10 final size:9
Alignment explanation
Indices: 10844107--10844227 Score: 57
Period size: 11 Copynumber: 11.9 Consensus size: 9
10844097 TATATATTCT
10844107 TTTTATTTA
1 TTTTATTTA
10844116 TTTTATATTTA
1 -TTT-TATTTA
10844127 TCTTTATTTTTA
1 T-TTTA--TTTA
10844139 TTTTGATATTA
1 TTTT-AT-TTA
10844150 TATTTATCTTTA
1 T-TTTA--TTTA
10844162 TTTTATCCTTA
1 TTTTAT--TTA
*
10844173 TTGATTAGTTA
1 TT--TTATTTA
10844184 -TTTATTTA
1 TTTTATTTA
*
10844192 TTTT-TATA
1 TTTTATTTA
*
10844200 TTTTTATCTA
1 -TTTTATTTA
10844210 TTTTATTTA
1 TTTTATTTA
10844219 TTTTGATTT
1 TTTT-ATTT
10844228 TGATTATTTT
Statistics
Matches: 89, Mismatches: 5, Indels: 34
0.70 0.04 0.27
Matches are distributed among these distances:
8 9 0.10
9 20 0.22
10 15 0.17
11 28 0.31
12 13 0.15
13 4 0.04
ACGTcount: A:0.22, C:0.04, G:0.03, T:0.70
Consensus pattern (9 bp):
TTTTATTTA
Found at i:10847513 original size:2 final size:2
Alignment explanation
Indices: 10847506--10847530 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10847496 TTAGTTTCAG
10847506 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
10847531 TCTTTTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10849564 original size:21 final size:20
Alignment explanation
Indices: 10849540--10849578 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
10849530 TATTTAATAT
10849540 ATTTTATTTATAATTTTTTTC
1 ATTTTATTT-TAATTTTTTTC
*
10849561 ATTTTATTTTAGTTTTTT
1 ATTTTATTTTAATTTTTT
10849579 AATTTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (20 bp):
ATTTTATTTTAATTTTTTTC
Found at i:10849590 original size:19 final size:19
Alignment explanation
Indices: 10849540--10849588 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 19
10849530 TATTTAATAT
* *
10849540 ATTTTATTTATAATTTTTTTC
1 ATTTTATTT-T-AGTTTTTTA
10849561 ATTTTATTTTAGTTTTTTA
1 ATTTTATTTTAGTTTTTTA
10849580 A-TTTATTTT
1 ATTTTATTTT
10849589 TAAAGTAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 8 0.31
19 8 0.31
20 1 0.04
21 9 0.35
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (19 bp):
ATTTTATTTTAGTTTTTTA
Found at i:10850889 original size:6 final size:6
Alignment explanation
Indices: 10850859--10850938 Score: 58
Period size: 6 Copynumber: 13.5 Consensus size: 6
10850849 TAGGTAAGTC
* * *
10850859 TATTTT TTTTTT GTATTTT ACATTTT TA--TT TATTTT TATTTT TATTAT
1 TATTTT TATTTT -TATTTT -TATTTT TATTTT TATTTT TATTTT TATTTT
* * * *
10850907 TGTTTT TATATA TATTTT T-CTTT TATTTT TAT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TAT
10850939 CTTATCTATT
Statistics
Matches: 55, Mismatches: 15, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
4 4 0.07
5 4 0.07
6 37 0.67
7 10 0.18
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.76
Consensus pattern (6 bp):
TATTTT
Found at i:10851093 original size:12 final size:12
Alignment explanation
Indices: 10851055--10851094 Score: 50
Period size: 11 Copynumber: 3.5 Consensus size: 12
10851045 TTATATGTTA
10851055 TAATTTATCTGT
1 TAATTTATCTGT
10851067 T-ATTTAAT-T-T
1 TAATTT-ATCTGT
10851077 TAATTTATCTGT
1 TAATTTATCTGT
10851089 TAATTT
1 TAATTT
10851095 TTTTATTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
10 4 0.17
11 10 0.42
12 10 0.42
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.62
Consensus pattern (12 bp):
TAATTTATCTGT
Found at i:10851102 original size:20 final size:21
Alignment explanation
Indices: 10851055--10851116 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 21
10851045 TTATATGTTA
10851055 TAATTTATCTGTTATTTAATTT
1 TAATTTATCTGTTATTT-ATTT
10851077 TAATTTATCTGTTAATTT-TTT
1 TAATTTATCTGTT-ATTTATTT
10851098 T-ATTTATC--TTATTTATTT
1 TAATTTATCTGTTATTTATTT
10851116 T
1 T
10851117 CATTAATATT
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
17 4 0.11
18 6 0.16
20 7 0.18
21 4 0.11
22 13 0.34
23 4 0.11
ACGTcount: A:0.24, C:0.05, G:0.03, T:0.68
Consensus pattern (21 bp):
TAATTTATCTGTTATTTATTT
Found at i:10851123 original size:31 final size:31
Alignment explanation
Indices: 10851088--10851147 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
10851078 AATTTATCTG
*
10851088 TTAATTTTTTTATTT-ATCTTATTTATTTTCA
1 TTAATATTTTTATTTGAT-TTATTTATTTTCA
*
10851119 TTAATATTTTTATTTGATTTTTTTATTTT
1 TTAATATTTTTATTTGATTTATTTATTTT
10851148 TTGATTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 24 0.92
32 2 0.08
ACGTcount: A:0.22, C:0.03, G:0.02, T:0.73
Consensus pattern (31 bp):
TTAATATTTTTATTTGATTTATTTATTTTCA
Found at i:10851691 original size:14 final size:14
Alignment explanation
Indices: 10851672--10851714 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
10851662 GAAAGTTTAG
*
10851672 AGAGAAAGAGGAGA
1 AGAGAAAGAGAAGA
10851686 AGAGAAAG-GAAG-
1 AGAGAAAGAGAAGA
*
10851698 AGAGAGAGAGAAGA
1 AGAGAAAGAGAAGA
10851712 AGA
1 AGA
10851715 AGCTCAGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 7 0.28
13 7 0.28
14 11 0.44
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (14 bp):
AGAGAAAGAGAAGA
Found at i:10851965 original size:49 final size:50
Alignment explanation
Indices: 10851887--10851996 Score: 195
Period size: 49 Copynumber: 2.2 Consensus size: 50
10851877 CTGTTAGTCG
*
10851887 AGCCGAGCCGACACCCCTGAGCCGCTTTTTCGAGCCGTTTTTCTTCCTTA
1 AGCCGAGCCGACACCCCTGAGCCGCTTTTTCAAGCCGTTTTTCTTCCTTA
10851937 AGCCGAGCCGACA-CCCTGAGCCGCTTTTTCAAGCCGTTTTTCTTCCTTA
1 AGCCGAGCCGACACCCCTGAGCCGCTTTTTCAAGCCGTTTTTCTTCCTTA
*
10851986 AGCCAAGCCGA
1 AGCCGAGCCGA
10851997 GCTGTTAGCC
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
49 45 0.78
50 13 0.22
ACGTcount: A:0.17, C:0.35, G:0.20, T:0.27
Consensus pattern (50 bp):
AGCCGAGCCGACACCCCTGAGCCGCTTTTTCAAGCCGTTTTTCTTCCTTA
Found at i:10852048 original size:5 final size:5
Alignment explanation
Indices: 10852040--10852182 Score: 61
Period size: 5 Copynumber: 28.2 Consensus size: 5
10852030 TTTTTTTATA
*
10852040 TATTT TA-TT TA-TT TA-TT TA-TT TATTT TATTAGAT TAGGTT TATTT
1 TATTT TATTT TATTT TATTT TATTT TATTT TATT---T TA-TTT TATTT
* * * *
10852085 AATAT TCTTT TATTTT TATCTT TATTT TATTTT TATTTT TGTTT TACTTT
1 TATTT TATTT TA-TTT TAT-TT TATTT TA-TTT TA-TTT TATTT TA-TTT
* *
10852135 T-CTT TA-TT T-TTT TATTT TCACTTT TATTT TGTTT TA--T TATTT TATTT
1 TATTT TATTT TATTT TATTT T-A-TTT TATTT TATTT TATTT TATTT TATTT
10852182 T
1 T
10852183 CTTTAAATAA
Statistics
Matches: 109, Mismatches: 13, Indels: 32
0.71 0.08 0.21
Matches are distributed among these distances:
3 3 0.03
4 25 0.23
5 44 0.40
6 29 0.27
7 4 0.04
8 3 0.03
9 1 0.01
ACGTcount: A:0.19, C:0.04, G:0.03, T:0.73
Consensus pattern (5 bp):
TATTT
Found at i:10852103 original size:6 final size:6
Alignment explanation
Indices: 10852092--10852182 Score: 66
Period size: 6 Copynumber: 15.5 Consensus size: 6
10852082 TTTAATATTC
* * * *
10852092 TTTTAT TTTTAT CTTTA- TTTTAT TTTTAT TTTT-G TTTTAC TTTTCT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
* *
10852138 TTATT-T TTTTAT TTTCAC TTTTAT TTTGT-T TTATTA- TTTTAT TTT
1 TT-TTAT TTTTAT TTTTAT TTTTAT TTT-TAT TT-TTAT TTTTAT TTT
10852183 CTTTAAATAA
Statistics
Matches: 67, Mismatches: 10, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
5 13 0.19
6 50 0.75
7 4 0.06
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:10852135 original size:40 final size:40
Alignment explanation
Indices: 10852091--10852187 Score: 103
Period size: 40 Copynumber: 2.5 Consensus size: 40
10852081 ATTTAATATT
*
10852091 CTTTTATTT-TTATCTTTATTTT-ATTTTTATTTTTGTTTTA
1 CTTTTATTTATT-TCTTTATTTTCACTTTTA-TTTTGTTTTA
* *
10852131 CTTTTCTTTATTTTTTTATTTTCACTTTTATTTTGTTTTA
1 CTTTTATTTATTTCTTTATTTTCACTTTTATTTTGTTTTA
*
10852171 -TTAT-TTTATTTTCTTTA
1 CTTTTATTTA-TTTCTTTA
10852188 AATAAAATCC
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
38 4 0.08
39 10 0.20
40 27 0.55
41 8 0.16
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.76
Consensus pattern (40 bp):
CTTTTATTTATTTCTTTATTTTCACTTTTATTTTGTTTTA
Found at i:10852146 original size:11 final size:10
Alignment explanation
Indices: 10852092--10852177 Score: 59
Period size: 11 Copynumber: 8.2 Consensus size: 10
10852082 TTTAATATTC
10852092 TTTTATTTTT
1 TTTTATTTTT
10852102 ATCTTTATTTTAT
1 -T-TTTATTTT-T
10852115 TTTTATTTTT
1 TTTTATTTTT
*
10852125 GTTTTACTTTT
1 -TTTTATTTTT
*
10852136 CTTTA--TTT
1 TTTTATTTTT
*
10852144 TTTTATTTTCAC
1 TTTTATTTT--T
*
10852156 TTTTATTTTG
1 TTTTATTTTT
*
10852166 TTTTATTATT
1 TTTTATTTTT
10852176 TT
1 TT
10852178 ATTTTCTTTA
Statistics
Matches: 61, Mismatches: 7, Indels: 15
0.73 0.08 0.18
Matches are distributed among these distances:
8 7 0.11
10 17 0.28
11 18 0.30
12 18 0.30
13 1 0.02
ACGTcount: A:0.14, C:0.06, G:0.02, T:0.78
Consensus pattern (10 bp):
TTTTATTTTT
Found at i:10852153 original size:17 final size:17
Alignment explanation
Indices: 10852025--10852152 Score: 68
Period size: 17 Copynumber: 7.5 Consensus size: 17
10852015 CTAGGTTTTT
* *
10852025 TTTTCTTTTTTTATATA
1 TTTTATTTTTTTATTTA
*
10852042 TTTTATTTATTTATTTA
1 TTTTATTTTTTTATTTA
* *
10852059 -TTTATTTTATTAGATTA
1 TTTTATTTTTTTA-TTTA
* ** *
10852076 GGTTTA-TTTAATA-TTC
1 -TTTTATTTTTTTATTTA
* *
10852092 TTTTATTTTTATCTTTA
1 TTTTATTTTTTTATTTA
*
10852109 TTTTATTTTTATT-TTTG
1 TTTTATTTTT-TTATTTA
10852126 TTTTACTTTTCTTTATTT-
1 TTTTA-TTTT-TTTATTTA
10852144 TTTTATTTT
1 TTTTATTTT
10852153 CACTTTTATT
Statistics
Matches: 88, Mismatches: 14, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
15 4 0.05
16 17 0.19
17 41 0.47
18 18 0.20
19 8 0.09
ACGTcount: A:0.19, C:0.04, G:0.03, T:0.74
Consensus pattern (17 bp):
TTTTATTTTTTTATTTA
Found at i:10852164 original size:17 final size:17
Alignment explanation
Indices: 10852092--10852182 Score: 69
Period size: 17 Copynumber: 5.2 Consensus size: 17
10852082 TTTAATATTC
* *
10852092 TTTTATTTTTATCTTTA
1 TTTTATTTTCATTTTTA
* *
10852109 TTTTATTTTTATTTTTG
1 TTTTATTTTCATTTTTA
*
10852126 TTTTACTTTTC-TTTATTT
1 TTTTA-TTTTCATTT-TTA
*
10852144 TTTTATTTTCACTTTTA
1 TTTTATTTTCATTTTTA
*
10852161 TTTTGTTTT-ATTATTTTA
1 TTTTATTTTCA-T-TTTTA
10852179 TTTT
1 TTTT
10852183 CTTTAAATAA
Statistics
Matches: 61, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
16 1 0.02
17 38 0.62
18 22 0.36
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.78
Consensus pattern (17 bp):
TTTTATTTTCATTTTTA
Found at i:10852269 original size:58 final size:57
Alignment explanation
Indices: 10852200--10852581 Score: 482
Period size: 57 Copynumber: 6.7 Consensus size: 57
10852190 TAAAATCCAA
*
10852200 AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTC
* *
10852257 AAAAAAAAATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAACTTTC
1 -AAAAAATATTTTTGGA-GAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTC
* * * ** * *
10852315 TAAAAATATTTTTGGGGTAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAGGTTTC
1 AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTC
* *
10852372 TAAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTC
1 -AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTC
** * * *
10852430 AAAAAAGGTTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTGAAATTAAAGTTTC
1 AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTC
* * * ** * * *
10852487 AAAAGATATTTTGGGA-AAAAATTGAAAGTATCAATTTTCCTCGAGATTAAAATTTC
1 AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTC
10852543 TAAAAAATA-TTTTGGAGAAAAGTTGAAAGTATCAATTTT
1 -AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTT
10852582 TCCTGCACAA
Statistics
Matches: 280, Mismatches: 39, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
56 42 0.15
57 137 0.49
58 101 0.36
ACGTcount: A:0.43, C:0.07, G:0.13, T:0.36
Consensus pattern (57 bp):
AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTC
Found at i:10852323 original size:115 final size:113
Alignment explanation
Indices: 10852201--10852581 Score: 505
Period size: 115 Copynumber: 3.3 Consensus size: 113
10852191 AAAATCCAAA
* * * *
10852201 AAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAAA
1 AAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTGAAATTAAAGTTTC-AAAAAATA
*
10852266 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAACTTTCT
65 TTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCT
* * * *
10852316 AAAAATATTTTTGGGGTAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAGGTTTCTAAAAAATA
1 AAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTGAAATTAAAGTTTC-AAAAAATA
* * *
10852381 TTTTTGGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCA
65 TTTTTGG-GAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCT
** * *
10852431 AAAAAGGTTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTGAAATTAAAGTTTCAAAAGATA-
1 AAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTGAAATTAAAGTTTCAAAAAATAT
* ** * *
10852495 TTTTGGGAAAAAATTGAAAGTATCAATTTTCCTCGAGATTAAAATTTCT
66 TTTTGGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCT
10852544 AAAAA-ATATTTTGGAGAAAAGTTGAAAGTATCAATTTT
1 AAAAATAT-TTTTGGAGAAAAGTTGAAAGTATCAATTTT
10852582 TCCTGCACAA
Statistics
Matches: 233, Mismatches: 30, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
112 2 0.01
113 73 0.31
114 8 0.03
115 150 0.64
ACGTcount: A:0.43, C:0.07, G:0.13, T:0.36
Consensus pattern (113 bp):
AAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTGAAATTAAAGTTTCAAAAAATAT
TTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCT
Found at i:10856794 original size:27 final size:26
Alignment explanation
Indices: 10856755--10856809 Score: 83
Period size: 27 Copynumber: 2.1 Consensus size: 26
10856745 TTAATTCAGG
10856755 ATTATGATAAGATAAAATAAAATAAT
1 ATTATGATAAGATAAAATAAAATAAT
* *
10856781 ATTATGAATAAGATTAAATTAAATAAT
1 ATTATG-ATAAGATAAAATAAAATAAT
10856808 AT
1 AT
10856810 CATTTTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 6 0.23
27 20 0.77
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.35
Consensus pattern (26 bp):
ATTATGATAAGATAAAATAAAATAAT
Found at i:10856851 original size:82 final size:82
Alignment explanation
Indices: 10856754--10856909 Score: 267
Period size: 82 Copynumber: 1.9 Consensus size: 82
10856744 ATTAATTCAG
* * *
10856754 GATTATGATAAGATAAAATAAAATAATATTATGAATAAGATTAAATTAAATAATATCATTTTATT
1 GATTATGATAAGATAAAATAAAATAAGATTATGAATAAAATTAAATTAAATAATATCATTTTACT
*
10856819 TTATGTTTGGTACAAAA
66 TTATATTTGGTACAAAA
*
10856836 GATTATGGTAAGATAAAATAAAATAAGATTATGAATAAAATTAAATTAAATAATATCATTTTACT
1 GATTATGATAAGATAAAATAAAATAAGATTATGAATAAAATTAAATTAAATAATATCATTTTACT
10856901 TTATATTTG
66 TTATATTTG
10856910 ACTTGTGCAA
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
82 69 1.00
ACGTcount: A:0.49, C:0.03, G:0.10, T:0.39
Consensus pattern (82 bp):
GATTATGATAAGATAAAATAAAATAAGATTATGAATAAAATTAAATTAAATAATATCATTTTACT
TTATATTTGGTACAAAA
Found at i:10856887 original size:27 final size:26
Alignment explanation
Indices: 10856834--10856888 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 26
10856824 TTTGGTACAA
* *
10856834 AAGATTATGGTAAGATAAAATAAAAT
1 AAGATTATGATAAAATAAAATAAAAT
* *
10856860 AAGATTATGAATAAAATTAAATTAAAT
1 AAGATTATG-ATAAAATAAAATAAAAT
10856887 AA
1 AA
10856889 TATCATTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.60, C:0.00, G:0.11, T:0.29
Consensus pattern (26 bp):
AAGATTATGATAAAATAAAATAAAAT
Found at i:10856962 original size:37 final size:37
Alignment explanation
Indices: 10856921--10856998 Score: 138
Period size: 37 Copynumber: 2.1 Consensus size: 37
10856911 CTTGTGCAAG
* *
10856921 AATTACGATAGATAATTTATTTATTGGTCAAAATTAT
1 AATTACAATAGATAATTTATTTATTGATCAAAATTAT
10856958 AATTACAATAGATAATTTATTTATTGATCAAAATTAT
1 AATTACAATAGATAATTTATTTATTGATCAAAATTAT
10856995 AATT
1 AATT
10856999 TTTCAAAGTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.44, C:0.05, G:0.08, T:0.44
Consensus pattern (37 bp):
AATTACAATAGATAATTTATTTATTGATCAAAATTAT
Found at i:10860181 original size:18 final size:19
Alignment explanation
Indices: 10860148--10860183 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
10860138 ACTTGGGATC
*
10860148 TTTTGTATAGTTTTTAATT
1 TTTTGTATAGTATTTAATT
10860167 TTTTGTATAG-ATTTAAT
1 TTTTGTATAGTATTTAAT
10860184 GTGATTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.25, C:0.00, G:0.11, T:0.64
Consensus pattern (19 bp):
TTTTGTATAGTATTTAATT
Found at i:10863674 original size:63 final size:63
Alignment explanation
Indices: 10863575--10863714 Score: 244
Period size: 63 Copynumber: 2.2 Consensus size: 63
10863565 ATCATGGAAT
10863575 AAATGCAAAGGTATTCATCATGGAATAAATTAGATTAGAATAAAGTAAGTTAAAAGGGAAACA
1 AAATGCAAAGGTATTCATCATGGAATAAATTAGATTAGAATAAAGTAAGTTAAAAGGGAAACA
* * * *
10863638 AAATGCAAAGGTTTTCATCATTGAATAAATTAGATTAGAATAAAGTAAGTTAAAAGGTACACA
1 AAATGCAAAGGTATTCATCATGGAATAAATTAGATTAGAATAAAGTAAGTTAAAAGGGAAACA
10863701 AAATGCAAAGGTAT
1 AAATGCAAAGGTAT
10863715 GTCTTTTAGA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 72 1.00
ACGTcount: A:0.49, C:0.07, G:0.18, T:0.26
Consensus pattern (63 bp):
AAATGCAAAGGTATTCATCATGGAATAAATTAGATTAGAATAAAGTAAGTTAAAAGGGAAACA
Found at i:10867577 original size:19 final size:20
Alignment explanation
Indices: 10867540--10867577 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
10867530 TTAAATATAT
*
10867540 AAAAAAATGAAAAGCAAAAG
1 AAAAAAATGAAAAGAAAAAG
*
10867560 AAAAAAA-GAAGAGAAAAA
1 AAAAAAATGAAAAGAAAAA
10867578 AATGCATGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 9 0.56
20 7 0.44
ACGTcount: A:0.79, C:0.03, G:0.16, T:0.03
Consensus pattern (20 bp):
AAAAAAATGAAAAGAAAAAG
Found at i:10867696 original size:21 final size:22
Alignment explanation
Indices: 10867655--10867697 Score: 52
Period size: 23 Copynumber: 1.9 Consensus size: 22
10867645 AAGATATTTT
10867655 TTAAAAAATAAAAAGTTAAAAGG
1 TTAAAAAATAAAAAG-TAAAAGG
*
10867678 TTAAAATAA-AAAAAGAAAAA
1 TTAAAA-AATAAAAAGTAAAA
10867698 AGAAAAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 4 0.22
23 12 0.67
24 2 0.11
ACGTcount: A:0.72, C:0.00, G:0.09, T:0.19
Consensus pattern (22 bp):
TTAAAAAATAAAAAGTAAAAGG
Found at i:10868043 original size:10 final size:10
Alignment explanation
Indices: 10868030--10868082 Score: 52
Period size: 10 Copynumber: 5.2 Consensus size: 10
10868020 TTTTTTTTAT
10868030 AATTTAAAAA
1 AATTTAAAAA
* *
10868040 AATTTATTAAT
1 AATTTA-AAAA
*
10868051 AATTTTAAAA
1 AATTTAAAAA
*
10868061 AATATAAAAA
1 AATTTAAAAA
*
10868071 AACTTAAAAA
1 AATTTAAAAA
10868081 AA
1 AA
10868083 ACACGTGACA
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
10 26 0.79
11 7 0.21
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (10 bp):
AATTTAAAAA
Found at i:10868659 original size:3 final size:3
Alignment explanation
Indices: 10868647--10868716 Score: 117
Period size: 3 Copynumber: 24.0 Consensus size: 3
10868637 TATATAGTAC
*
10868647 ATT A-T ATT ATT ATC ATT -TT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
10868693 ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT
10868717 GTTGTTGTTG
Statistics
Matches: 63, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
2 4 0.06
3 59 0.94
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:10868721 original size:3 final size:3
Alignment explanation
Indices: 10868715--10868740 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
10868705 ATTATTATTA
10868715 TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TT
10868741 ATTTTTATCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:10869547 original size:25 final size:24
Alignment explanation
Indices: 10869518--10869564 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
10869508 AATGTTTCCT
* *
10869518 TTTCTATTTTATTTTTATTTTTTTA
1 TTTCTA-TTTACTTTTATATTTTTA
10869543 TTTCTATTTACTTTTATATTTT
1 TTTCTATTTACTTTTATATTTT
10869565 GGCTCATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (24 bp):
TTTCTATTTACTTTTATATTTTTA
Found at i:10869818 original size:13 final size:13
Alignment explanation
Indices: 10869800--10869829 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
10869790 CAATTTTTTA
10869800 AAAAAATAAAAAT
1 AAAAAATAAAAAT
10869813 AAAAAATAAAAAT
1 AAAAAATAAAAAT
10869826 AAAA
1 AAAA
10869830 TTTTTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:10875808 original size:25 final size:25
Alignment explanation
Indices: 10875774--10875822 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
10875764 ACTAAAATAA
*
10875774 AAAATATTAATTAAAATT-TAAAAG
1 AAAATATTAAATAAAATTATAAAAG
*
10875798 AAAATATTTAAATGAAATTATAAAA
1 AAAATA-TTAAATAAAATTATAAAA
10875823 ATTTCCATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 10 0.48
26 5 0.24
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (25 bp):
AAAATATTAAATAAAATTATAAAAG
Found at i:10877085 original size:22 final size:21
Alignment explanation
Indices: 10877036--10877086 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
10877026 TATATGTTCA
10877036 TTAATGATTATAAAAGTAAATT
1 TTAAT-ATTATAAAAGTAAATT
*
10877058 AT-ATATTATATAGAA-TAAATT
1 TTAATATTATA-A-AAGTAAATT
10877079 TTAATATT
1 TTAATATT
10877087 TAATTGTGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
20 6 0.25
21 10 0.42
22 8 0.33
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (21 bp):
TTAATATTATAAAAGTAAATT
Found at i:10877888 original size:13 final size:13
Alignment explanation
Indices: 10877870--10877915 Score: 58
Period size: 13 Copynumber: 3.6 Consensus size: 13
10877860 TCATCCATAT
10877870 CTTTTTCTCTTAA
1 CTTTTTCTCTTAA
* *
10877883 CTTTTTCTTTTCA
1 CTTTTTCTCTTAA
*
10877896 CTTTAT-TCTTAA
1 CTTTTTCTCTTAA
10877908 CTTTTTCT
1 CTTTTTCT
10877916 TTTCACTTTA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
12 9 0.35
13 17 0.65
ACGTcount: A:0.13, C:0.22, G:0.00, T:0.65
Consensus pattern (13 bp):
CTTTTTCTCTTAA
Found at i:10877905 original size:25 final size:25
Alignment explanation
Indices: 10877877--10877926 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
10877867 TATCTTTTTC
10877877 TCTTAACTTTTTCTTTTCACTTTAT
1 TCTTAACTTTTTCTTTTCACTTTAT
10877902 TCTTAACTTTTTCTTTTCACTTTAT
1 TCTTAACTTTTTCTTTTCACTTTAT
10877927 AATTACTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.16, C:0.20, G:0.00, T:0.64
Consensus pattern (25 bp):
TCTTAACTTTTTCTTTTCACTTTAT
Found at i:10877942 original size:25 final size:25
Alignment explanation
Indices: 10877879--10877942 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
10877869 TCTTTTTCTC
* **
10877879 TTAACTTTTTCTTTTCACTTTATTC
1 TTAACTTTTACTTTTCACTTTATAA
*
10877904 TTAACTTTTTCTTTTCACTTTATAA
1 TTAACTTTTACTTTTCACTTTATAA
10877929 TT-ACTTTTGACTTT
1 TTAACTTTT-ACTTT
10877943 AACTCTATCT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
24 6 0.17
25 29 0.83
ACGTcount: A:0.19, C:0.17, G:0.02, T:0.62
Consensus pattern (25 bp):
TTAACTTTTACTTTTCACTTTATAA
Found at i:10879693 original size:65 final size:62
Alignment explanation
Indices: 10879618--10879803 Score: 160
Period size: 64 Copynumber: 2.9 Consensus size: 62
10879608 ATTTTAGAGG
* * * *
10879618 GATTATTGAAGATGATTTTGACCAAAAACACCTTCAATAATCCCCTTAATAAAATTTTTTGTTTA
1 GATTATTGAAGGTGATTTTGA-CAAAAACACCTTCAATAATCCCC-T-ACAAAATTTTTTATATA
* * * * * * *
10879683 GATTATTGAAGGT-AGTTTTGAAAAAAACGCTTTCAATAATTCCCTCCAAATTTTTTTATATG
1 GATTATTGAAGGTGA-TTTTGACAAAAACACCTTCAATAATCCCCTACAAAATTTTTTATATA
* * * *
10879745 GATTATTGAAGGTGTTTTTGATCAAAAA-AGCCTTCAATATTCCATCTCCAAAATTTTTT
1 GATTATTGAAGGTGATTTTGA-CAAAAACA-CCTTCAATAATCC-CCTACAAAATTTTTT
10879804 GAATGGATTC
Statistics
Matches: 97, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 30 0.31
63 16 0.16
64 33 0.34
65 18 0.19
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.40
Consensus pattern (62 bp):
GATTATTGAAGGTGATTTTGACAAAAACACCTTCAATAATCCCCTACAAAATTTTTTATATA
Found at i:10879750 original size:62 final size:62
Alignment explanation
Indices: 10879617--10879812 Score: 168
Period size: 65 Copynumber: 3.1 Consensus size: 62
10879607 TATTTTAGAG
* * * * ** **
10879617 GGATTATTGAAGATGATTTTGACCAAAAACA-CCTTCAATAATCCCCTTAATAAAATTTTTTGTT
1 GGATTATTGAAGGTGTTTTTGA-CAAAAA-AGCCTTCAATATTCCAC-T-CCAAAATTTTTTGAA
10879681 T
62 T
* * *
10879682 AGATTATTGAAGGTAG-TTTTGA-AAAAAACGCTTTCAATAATTCC-CTCC-AAATTTTTTTATA
1 GGATTATTGAAGGT-GTTTTTGACAAAAAA-GCCTTCAAT-ATTCCACTCCAAAATTTTTTGA-A
10879743 T
62 T
10879744 GGATTATTGAAGGTGTTTTTGATCAAAAAAGCCTTCAATATTCCATCTCCAAAATTTTTTGAAT
1 GGATTATTGAAGGTGTTTTTGA-CAAAAAAGCCTTCAATATTCCA-CTCCAAAATTTTTTGAAT
10879808 GGATT
1 GGATT
10879813 CAATGTTTTA
Statistics
Matches: 108, Mismatches: 12, Indels: 23
0.76 0.08 0.16
Matches are distributed among these distances:
61 10 0.09
62 26 0.24
63 14 0.13
64 25 0.23
65 32 0.30
66 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.39
Consensus pattern (62 bp):
GGATTATTGAAGGTGTTTTTGACAAAAAAGCCTTCAATATTCCACTCCAAAATTTTTTGAAT
Found at i:10879773 original size:64 final size:61
Alignment explanation
Indices: 10879617--10879812 Score: 159
Period size: 62 Copynumber: 3.1 Consensus size: 61
10879607 TATTTTAGAG
* * ** * * *
10879617 GGATTATTGAAGATGATTTTGACCAAAAACAC-CTTCAATAATCCCCTTAATAAAATTTTTTGTT
1 GGATTATTGAAGGTG-TTTTGA-CAAAAA-ACGCTTCAATAATTCCC-T-CCAAATTTTTTTATA
10879681 T
61 T
*
10879682 AGATTATTGAAGGTAGTTTTGA-AAAAAACGCTTTCAATAATTCCCTCCAAATTTTTTTATAT
1 GGATTATTGAAGGT-GTTTTGACAAAAAACGC-TTCAATAATTCCCTCCAAATTTTTTTATAT
*
10879744 GGATTATTGAAGGTGTTTTTGATCAAAAAA-GCCTTCAAT-ATTCCATCTCCAAAATTTTTTGA-
1 GGATTATTGAAGGTG-TTTTGA-CAAAAAACG-CTTCAATAATTCC--CTCC-AAATTTTTTTAT
10879806 AT
60 AT
10879808 GGATT
1 GGATT
10879813 CAATGTTTTA
Statistics
Matches: 111, Mismatches: 10, Indels: 21
0.78 0.07 0.15
Matches are distributed among these distances:
61 1 0.01
62 37 0.33
63 14 0.13
64 30 0.27
65 28 0.25
66 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.39
Consensus pattern (61 bp):
GGATTATTGAAGGTGTTTTGACAAAAAACGCTTCAATAATTCCCTCCAAATTTTTTTATAT
Found at i:10882041 original size:27 final size:27
Alignment explanation
Indices: 10882010--10882072 Score: 126
Period size: 27 Copynumber: 2.3 Consensus size: 27
10882000 TTGAAATGGT
10882010 GTCGTTTTGGGTCTTTCCCTAAACGAC
1 GTCGTTTTGGGTCTTTCCCTAAACGAC
10882037 GTCGTTTTGGGTCTTTCCCTAAACGAC
1 GTCGTTTTGGGTCTTTCCCTAAACGAC
10882064 GTCGTTTTG
1 GTCGTTTTG
10882073 CGTTTTGCTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.13, C:0.24, G:0.24, T:0.40
Consensus pattern (27 bp):
GTCGTTTTGGGTCTTTCCCTAAACGAC
Found at i:10882733 original size:11 final size:11
Alignment explanation
Indices: 10882717--10882777 Score: 52
Period size: 11 Copynumber: 5.4 Consensus size: 11
10882707 AGGGGAATCT
10882717 GGTGGCTGTAG
1 GGTGGCTGTAG
10882728 GGTGGCTGTAG
1 GGTGGCTGTAG
10882739 TGGT-GCTGGTAG
1 -GGTGGCT-GTAG
* * **
10882751 GGTAGTTGGTCT
1 GGTGGCT-GTAG
10882763 GGTGGCTGTAG
1 GGTGGCTGTAG
10882774 GGTG
1 GGTG
10882778 CTGGTCGGGG
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
11 23 0.57
12 17 0.43
ACGTcount: A:0.08, C:0.08, G:0.52, T:0.31
Consensus pattern (11 bp):
GGTGGCTGTAG
Found at i:10882781 original size:17 final size:18
Alignment explanation
Indices: 10882728--10882782 Score: 64
Period size: 17 Copynumber: 3.2 Consensus size: 18
10882718 GTGGCTGTAG
10882728 GGTGGCTGTAGTGGTGCT
1 GGTGGCTGTAGTGGTGCT
10882746 GGTAGG--GTAGTTGGT-CT
1 GGT-GGCTGTAG-TGGTGCT
10882763 GGTGGCTGTAG-GGTGCT
1 GGTGGCTGTAGTGGTGCT
10882780 GGT
1 GGT
10882783 CGGGGGGCGG
Statistics
Matches: 32, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
16 5 0.16
17 14 0.44
18 11 0.34
19 2 0.06
ACGTcount: A:0.07, C:0.09, G:0.51, T:0.33
Consensus pattern (18 bp):
GGTGGCTGTAGTGGTGCT
Found at i:10882897 original size:20 final size:20
Alignment explanation
Indices: 10882828--10882897 Score: 58
Period size: 20 Copynumber: 3.5 Consensus size: 20
10882818 TTTTTTCCTC
*
10882828 TTTT-TTTATTTTTTTATT-
1 TTTTATTTATTGTTTTATTA
* *
10882846 TTTTGTTTTTTGGTTTTA-TA
1 TTTTATTTATT-GTTTTATTA
10882866 TTTTATTATATTGTTTTATTA
1 TTTTATT-TATTGTTTTATTA
10882887 TTATT-TTTATT
1 TT-TTATTTATT
10882898 AATTAATAAG
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
18 4 0.10
19 6 0.14
20 21 0.50
21 9 0.21
22 2 0.05
ACGTcount: A:0.16, C:0.00, G:0.06, T:0.79
Consensus pattern (20 bp):
TTTTATTTATTGTTTTATTA
Found at i:10882942 original size:15 final size:17
Alignment explanation
Indices: 10882919--10882951 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
10882909 ATTTTTAAAA
10882919 AAAATATTATTAT-TAT
1 AAAATATTATTATATAT
10882935 AAAA-ATTATTATATAT
1 AAAATATTATTATATAT
10882951 A
1 A
10882952 TTGAAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
AAAATATTATTATATAT
Found at i:10883496 original size:102 final size:102
Alignment explanation
Indices: 10883308--10883509 Score: 280
Period size: 102 Copynumber: 2.0 Consensus size: 102
10883298 GAGTTAGAGG
** *
10883308 ATAACAACAATTGAGATTAAACTGTGACTTTAAATTAAAGAGATCGGGATTGAATCACGAATCGG
1 ATAACAACAATTGAGATTAAACTACGACTTTAAATTAAAGAGATCGGGATTGAATCACGAATCGA
* *** * * *
10883373 AGAATAAAGAGATTGGGATTAAACTATGAGTCAAAAA
66 AGAATAAAGAAACCAGAATTAAACCATGAGCCAAAAA
* *
10883410 ATAACAACAATTGAGATTAAACTACGATTTTAAATTAAAGAGATCGGGATTGAA-CTGCGAATCG
1 ATAACAACAATTGAGATTAAACTACGACTTTAAATTAAAGAGATCGGGATTGAATC-ACGAATCG
10883474 AAGAATAAAGAAACCAGAATTAAACCATGAGCCAAA
65 AAGAATAAAGAAACCAGAATTAAACCATGAGCCAAA
10883510 GATTAAATAT
Statistics
Matches: 87, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
101 1 0.01
102 86 0.99
ACGTcount: A:0.47, C:0.12, G:0.19, T:0.23
Consensus pattern (102 bp):
ATAACAACAATTGAGATTAAACTACGACTTTAAATTAAAGAGATCGGGATTGAATCACGAATCGA
AGAATAAAGAAACCAGAATTAAACCATGAGCCAAAAA
Found at i:10883571 original size:38 final size:38
Alignment explanation
Indices: 10883524--10883632 Score: 127
Period size: 35 Copynumber: 2.9 Consensus size: 38
10883514 AAATATGACT
*
10883524 GGGACTAAACCATAAGTCAAAAAATTAATGAAATGATA
1 GGGACTAAACCACAAGTCAAAAAATTAATGAAATGATA
* * * *
10883562 GGGATTAAACCACGAGTC-AAAGATTAA--AGATGACTA
1 GGGACTAAACCACAAGTCAAAAAATTAATGAAATGA-TA
*
10883598 -GGACTAAACCACAAGTCATAAAATTAATGAAATGA
1 GGGACTAAACCACAAGTCAAAAAATTAATGAAATGA
10883633 CCGGGATTAA
Statistics
Matches: 57, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
35 20 0.35
36 9 0.16
37 8 0.14
38 20 0.35
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (38 bp):
GGGACTAAACCACAAGTCAAAAAATTAATGAAATGATA
Found at i:10883583 original size:73 final size:72
Alignment explanation
Indices: 10883492--10883934 Score: 400
Period size: 73 Copynumber: 6.2 Consensus size: 72
10883482 AGAAACCAGA
* * * * *
10883492 ATTAAACCATGAGCCAAAGATTAAATATGACTGGGACTAAACCATAAGTCAAAAAATTAATGAAA
1 ATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCACAAGTC-AAAAATTAATGAAA
** *
10883557 TGATAGGG
65 TGACCGAG
* *
10883565 ATTAAACCACGAGTCAAAGATTAAAGATGACTAGGACTAAACCACAAGTCATAAAATTAATGAAA
1 ATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCACAAGTCA-AAAATTAATGAAA
*
10883630 TGACCGGG
65 TGACCGAG
* * * * ** * * *
10883638 ATTAAATCACGAGTTAAAGATTAAAAAAGACTGGGACTGAACCGTAGGTC--AGA-GAATGAAAT
1 ATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCACAAGTCAAAAATTAATGAAAT
*
10883700 GACTGAG
66 GACCGAG
* * ** * * *
10883707 ATTAAACCATGAGTCAAAGATTAAAGAAGACTGGGACTGAACCGTAGGTC--AGA-GAATGAAAT
1 ATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCACAAGTCAAAAATTAATGAAAT
10883769 GACCGAG
66 GACCGAG
* ** * * ***
10883776 ATTAAACTACGAGTCAAAGATTAAAGACAACTGGGACTGAATCGCAAGTCGGGCAATTAATGAAA
1 ATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCACAAGTC-AAAAATTAATGAAA
10883841 TGACC-AGG
65 TGACCGA-G
* * *
10883849 ATT-AACCACGAGTCAAAAGA-TAAAGATGACTGGGATTGAATCACAAGTCAGAGAATTAATGAA
1 ATTAAACCACGAGTC-AAAGATTAAAGATGACTGGGACTGAACCACAAGTCA-AAAATTAATGAA
*
10883912 ATGATCGAG
64 ATGACCGAG
*
10883921 ATTAAACCGCGAGT
1 ATTAAACCACGAGT
10883935 TAAATATGAC
Statistics
Matches: 315, Mismatches: 45, Indels: 20
0.83 0.12 0.05
Matches are distributed among these distances:
69 120 0.38
70 2 0.01
72 57 0.18
73 136 0.43
ACGTcount: A:0.44, C:0.14, G:0.22, T:0.20
Consensus pattern (72 bp):
ATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCACAAGTCAAAAATTAATGAAAT
GACCGAG
Found at i:10885034 original size:9 final size:9
Alignment explanation
Indices: 10885021--10885100 Score: 65
Period size: 9 Copynumber: 8.8 Consensus size: 9
10885011 TCCTTTCTCA
10885021 TTTTTT-TT
1 TTTTTTATT
*
10885029 ATTTTTATT
1 TTTTTTATT
10885038 TTTTTTCATT
1 TTTTTT-ATT
*
10885048 TTTTATATT
1 TTTTTTATT
*
10885057 TTTTATATT
1 TTTTTTATT
*
10885066 TTTTTGT-TG
1 TTTTT-TATT
*
10885075 TTTTATATT
1 TTTTTTATT
*
10885084 TTTTTATCTT
1 TTTTT-TATT
10885094 TTTTTTA
1 TTTTTTA
10885101 AGCAAAATAT
Statistics
Matches: 57, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
8 6 0.11
9 34 0.60
10 17 0.30
ACGTcount: A:0.14, C:0.03, G:0.03, T:0.81
Consensus pattern (9 bp):
TTTTTTATT
Found at i:10885043 original size:10 final size:10
Alignment explanation
Indices: 10885021--10885099 Score: 52
Period size: 10 Copynumber: 7.7 Consensus size: 10
10885011 TCCTTTCTCA
10885021 TTTTTTTTAT
1 TTTTTTTTAT
*
10885031 TTTTATTTTTT
1 TTTT-TTTTAT
10885042 TTCATTTTTTA-
1 TT--TTTTTTAT
*
10885053 TATTTTTTAT
1 TTTTTTTTAT
* *
10885063 ATTTTTTTGT
1 TTTTTTTTAT
* *
10885073 TGTTTTATAT
1 TTTTTTTTAT
* *
10885083 TTTTTTATCT
1 TTTTTTTTAT
10885093 TTTTTTT
1 TTTTTTT
10885100 AAGCAAAATA
Statistics
Matches: 52, Mismatches: 13, Indels: 8
0.71 0.18 0.11
Matches are distributed among these distances:
9 7 0.13
10 31 0.60
11 8 0.15
12 4 0.08
13 2 0.04
ACGTcount: A:0.13, C:0.03, G:0.03, T:0.82
Consensus pattern (10 bp):
TTTTTTTTAT
Found at i:10885046 original size:25 final size:27
Alignment explanation
Indices: 10885018--10885098 Score: 96
Period size: 28 Copynumber: 3.0 Consensus size: 27
10885008 ACTTCCTTTC
*
10885018 TCATTTTTTTTA-TTTTTAT-TTTTTT
1 TCATTTTTTATATTTTTTATATTTTTT
10885043 TCATTTTTTATATTTTTTATATTTTTT
1 TCATTTTTTATATTTTTTATATTTTTT
* *
10885070 T-GTTGTTTTATATTTTTTTATCTTTTTT
1 TCATT-TTTTATA-TTTTTTATATTTTTT
10885098 T
1 T
10885099 TAAGCAAAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
25 11 0.22
26 9 0.18
27 14 0.29
28 15 0.31
ACGTcount: A:0.14, C:0.04, G:0.02, T:0.80
Consensus pattern (27 bp):
TCATTTTTTATATTTTTTATATTTTTT
Found at i:10885051 original size:18 final size:17
Alignment explanation
Indices: 10885030--10885096 Score: 80
Period size: 18 Copynumber: 3.7 Consensus size: 17
10885020 ATTTTTTTTA
*
10885030 TTTTTATTTTTTTTCATT
1 TTTTTATTTTTTAT-ATT
10885048 TTTTATATTTTTTATATT
1 TTTT-TATTTTTTATATT
*
10885066 TTTTTGTTGTTTTATATT
1 TTTTTATT-TTTTATATT
10885084 TTTTTATCTTTTT
1 TTTTTAT-TTTTT
10885097 TTTAAGCAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
17 3 0.07
18 30 0.70
19 10 0.23
ACGTcount: A:0.13, C:0.03, G:0.03, T:0.81
Consensus pattern (17 bp):
TTTTTATTTTTTATATT
Found at i:10894674 original size:90 final size:90
Alignment explanation
Indices: 10894573--10894749 Score: 282
Period size: 90 Copynumber: 2.0 Consensus size: 90
10894563 CAGTTGGCAT
* * * ** *
10894573 ACAATTTTTTTGAACCAAATTATGGGAATCCTATTGCCTTTATACATATATCTTCGTCACTCGTT
1 ACAAATTTTTTGAACCAAATCATGGGAATCCTATTGCCTTTAGACATATATCTTCACCACTCATT
10894638 GCTCTCATTCCAATCAATGTTCTAC
66 GCTCTCATTCCAATCAATGTTCTAC
*
10894663 ACAAATTTTTTGAACCAAATCATGGGAATCCTCTTGCCTTTAGACATATATCTTCACCACTCATT
1 ACAAATTTTTTGAACCAAATCATGGGAATCCTATTGCCTTTAGACATATATCTTCACCACTCATT
*
10894728 GCTCTCATTCCAATCATTGTTC
66 GCTCTCATTCCAATCAATGTTC
10894750 CTTACATATA
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
90 79 1.00
ACGTcount: A:0.27, C:0.25, G:0.10, T:0.38
Consensus pattern (90 bp):
ACAAATTTTTTGAACCAAATCATGGGAATCCTATTGCCTTTAGACATATATCTTCACCACTCATT
GCTCTCATTCCAATCAATGTTCTAC
Found at i:10895250 original size:34 final size:34
Alignment explanation
Indices: 10895212--10895284 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 34
10895202 AATAAACACA
* * *
10895212 TATTTGAATTGTTATGTCTATACAAATAA-ATATC
1 TATTTGAATGGTCATGTCTATACAAA-AAGACATC
* *
10895246 TATTTGGATGGTCATGTCTGTACAAAAAGACATC
1 TATTTGAATGGTCATGTCTATACAAAAAGACATC
10895280 TATTT
1 TATTT
10895285 TATTATAAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
33 2 0.06
34 31 0.94
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (34 bp):
TATTTGAATGGTCATGTCTATACAAAAAGACATC
Found at i:10903455 original size:21 final size:20
Alignment explanation
Indices: 10903431--10903469 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
10903421 TATTTAATAT
10903431 ATTTTATTTATAATTTTTTTC
1 ATTTTATTT-TAATTTTTTTC
*
10903452 ATTTTATTTTAGTTTTTT
1 ATTTTATTTTAATTTTTT
10903470 AATTTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (20 bp):
ATTTTATTTTAATTTTTTTC
Found at i:10903481 original size:19 final size:19
Alignment explanation
Indices: 10903431--10903479 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 19
10903421 TATTTAATAT
* *
10903431 ATTTTATTTATAATTTTTTTC
1 ATTTTATTT-T-AGTTTTTTA
10903452 ATTTTATTTTAGTTTTTTA
1 ATTTTATTTTAGTTTTTTA
10903471 A-TTTATTTT
1 ATTTTATTTT
10903480 TAAAGTAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 8 0.31
19 8 0.31
20 1 0.04
21 9 0.35
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (19 bp):
ATTTTATTTTAGTTTTTTA
Found at i:10909763 original size:15 final size:15
Alignment explanation
Indices: 10909718--10909763 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
10909708 TTAAATTACT
*
10909718 TATTTATTATTATTG
1 TATTTATTATTATGG
* * *
10909733 TTTTTTTTACTATGG
1 TATTTATTATTATGG
10909748 TATTTATTATTATGG
1 TATTTATTATTATGG
10909763 T
1 T
10909764 TGAATTGATT
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.22, C:0.02, G:0.11, T:0.65
Consensus pattern (15 bp):
TATTTATTATTATGG
Found at i:10911417 original size:3 final size:3
Alignment explanation
Indices: 10911409--10911439 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
10911399 AATTATCCCA
*
10911409 AAC AAC AAC AAC AAC AAC AAC AAC AAT AAC A
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC A
10911440 CAAAATAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.68, C:0.29, G:0.00, T:0.03
Consensus pattern (3 bp):
AAC
Found at i:10912797 original size:28 final size:29
Alignment explanation
Indices: 10912755--10912809 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
10912745 AAAATTCAAT
*
10912755 AAAACAAAACAAACAAAAGCAGAATTTTTG
1 AAAACAAAACAAACAAAAG-ACAATTTTTG
10912785 AAAA-AAAA-AAACAAAAGACAATTTT
1 AAAACAAAACAAACAAAAGACAATTTT
10912810 AAACGGTCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 7 0.29
28 9 0.38
29 4 0.17
30 4 0.17
ACGTcount: A:0.65, C:0.11, G:0.07, T:0.16
Consensus pattern (29 bp):
AAAACAAAACAAACAAAAGACAATTTTTG
Found at i:10914043 original size:11 final size:11
Alignment explanation
Indices: 10914026--10914060 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
10914016 AAACTAATAT
10914026 CAAATCAATTG
1 CAAATCAATTG
* *
10914037 TAAATCAATTA
1 CAAATCAATTG
10914048 CAAATCAATTG
1 CAAATCAATTG
10914059 CA
1 CA
10914061 CATCCTCCTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.49, C:0.17, G:0.06, T:0.29
Consensus pattern (11 bp):
CAAATCAATTG
Found at i:10915117 original size:21 final size:22
Alignment explanation
Indices: 10915090--10915138 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
10915080 CTATTATTTT
*
10915090 TATTTTA-ATATAATATTAATAA
1 TATTTTATA-ATAATAATAATAA
10915112 T-TTTTATAATAATAATAATAA
1 TATTTTATAATAATAATAATAA
10915133 TATTTT
1 TATTTT
10915139 TTTAAAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 18 0.75
22 6 0.25
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
TATTTTATAATAATAATAATAA
Found at i:10915149 original size:21 final size:23
Alignment explanation
Indices: 10915092--10915151 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 23
10915082 ATTATTTTTA
* *
10915092 TTTTAATATAATATTAATAATTT
1 TTTTAATAAAATAATAATAATTT
*
10915115 TTATAATAATAATAATAAT-ATTT
1 TTTTAATAA-AATAATAATAATTT
10915138 TTTTAA-AAAATAAT
1 TTTTAATAAAATAAT
10915152 TATTAATTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 6 0.19
22 2 0.06
23 16 0.50
24 8 0.25
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (23 bp):
TTTTAATAAAATAATAATAATTT
Found at i:10915198 original size:6 final size:6
Alignment explanation
Indices: 10915189--10915234 Score: 58
Period size: 6 Copynumber: 7.7 Consensus size: 6
10915179 TAATAAGAAT
* *
10915189 AAAACA AAAACA AAAAC- AAAACA AAAAAA TAAAAAA AAAACA AAAA
1 AAAACA AAAACA AAAACA AAAACA AAAACA -AAAACA AAAACA AAAA
10915235 GTAGGGTGGC
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
5 5 0.14
6 25 0.69
7 6 0.17
ACGTcount: A:0.87, C:0.11, G:0.00, T:0.02
Consensus pattern (6 bp):
AAAACA
Found at i:10915198 original size:30 final size:27
Alignment explanation
Indices: 10915164--10915234 Score: 70
Period size: 30 Copynumber: 2.5 Consensus size: 27
10915154 TTAATTATAT
* * *
10915164 AAAAAATAAAAAAAATAATAAGAATAAA
1 AAAAAAAAAAAAAAACAA-AAAAATAAA
10915192 ACAAAAACAAAAACAAAACAAAAAAATAAA
1 A-AAAAA-AAAAA-AAAACAAAAAAATAAA
*
10915222 AAAAAAACAAAAA
1 AAAAAAAAAAAAA
10915235 GTAGGGTGGC
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
27 2 0.06
28 5 0.14
29 10 0.28
30 13 0.36
31 6 0.17
ACGTcount: A:0.85, C:0.07, G:0.01, T:0.07
Consensus pattern (27 bp):
AAAAAAAAAAAAAAACAAAAAAATAAA
Found at i:10915209 original size:11 final size:10
Alignment explanation
Indices: 10915189--10915234 Score: 58
Period size: 11 Copynumber: 4.5 Consensus size: 10
10915179 TAATAAGAAT
10915189 AAAACAAAAAC
1 AAAA-AAAAAC
10915200 AAAAACAAAAC
1 AAAAA-AAAAC
*
10915211 AAAAAAATA-
1 AAAAAAAAAC
10915220 AAAAAAAAAC
1 AAAAAAAAAC
10915230 AAAAA
1 AAAAA
10915235 GTAGGGTGGC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
9 8 0.26
10 9 0.29
11 14 0.45
ACGTcount: A:0.87, C:0.11, G:0.00, T:0.02
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:10915220 original size:36 final size:35
Alignment explanation
Indices: 10915165--10915234 Score: 95
Period size: 36 Copynumber: 2.0 Consensus size: 35
10915155 TAATTATATA
* * * *
10915165 AAAAATAAAAAAAATAATAAGAATAAAACAAAAAC
1 AAAAACAAAAAAAAAAATAAAAAAAAAACAAAAAC
10915200 AAAAACAAAACAAAAAAATAAAAAAAAAACAAAAA
1 AAAAACAAAA-AAAAAAATAAAAAAAAAACAAAAA
10915235 GTAGGGTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
35 9 0.30
36 21 0.70
ACGTcount: A:0.84, C:0.07, G:0.01, T:0.07
Consensus pattern (35 bp):
AAAAACAAAAAAAAAAATAAAAAAAAAACAAAAAC
Found at i:10915899 original size:8 final size:8
Alignment explanation
Indices: 10915886--10915917 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
10915876 TGCCAGAGCT
10915886 CTCTCTCC
1 CTCTCTCC
10915894 CTCTCTCC
1 CTCTCTCC
10915902 CTCTCTCC
1 CTCTCTCC
10915910 CTCTCTCC
1 CTCTCTCC
10915918 ATCCCTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38
Consensus pattern (8 bp):
CTCTCTCC
Found at i:10916729 original size:17 final size:17
Alignment explanation
Indices: 10916709--10916754 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
10916699 CTAAGTTTTT
10916709 AAAACCCCTAAAAATTC
1 AAAACCCCTAAAAATTC
*
10916726 AAAATCCCCT-AAGATTC
1 AAAA-CCCCTAAAAATTC
10916743 AAAACCTCCTAA
1 AAAACC-CCTAA
10916755 CAATCCTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 2 0.08
17 17 0.68
18 6 0.24
ACGTcount: A:0.48, C:0.30, G:0.02, T:0.20
Consensus pattern (17 bp):
AAAACCCCTAAAAATTC
Found at i:10917983 original size:17 final size:17
Alignment explanation
Indices: 10917961--10917994 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
10917951 TTTATTCATG
10917961 TTATTTTAATTAATACA
1 TTATTTTAATTAATACA
10917978 TTATTTTAATTAATACA
1 TTATTTTAATTAATACA
10917995 CACTTTGCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (17 bp):
TTATTTTAATTAATACA
Found at i:10928158 original size:18 final size:17
Alignment explanation
Indices: 10928110--10928186 Score: 79
Period size: 18 Copynumber: 4.4 Consensus size: 17
10928100 TTTTGCTTAA
10928110 AAAAAGATAAAAAAATAT
1 AAAAA-ATAAAAAAATAT
*
10928128 AAAACAACAAAAAAATAT
1 AAAA-AATAAAAAAATAT
10928146 AAAAAATATAAAAAATGA-
1 AAAAAATA-AAAAAAT-AT
10928164 AAAAAA-AGAAAAAATA-
1 AAAAAATA-AAAAAATAT
10928180 AAAAAAT
1 AAAAAAT
10928187 GAGAAAGGAA
Statistics
Matches: 52, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
16 7 0.13
17 11 0.21
18 32 0.62
19 2 0.04
ACGTcount: A:0.81, C:0.03, G:0.04, T:0.13
Consensus pattern (17 bp):
AAAAAATAAAAAAATAT
Found at i:10928184 original size:9 final size:9
Alignment explanation
Indices: 10928107--10928185 Score: 65
Period size: 9 Copynumber: 8.9 Consensus size: 9
10928097 ATATTTTGCT
10928107 TAAAAAAAGA
1 TAAAAAAA-A
10928117 T-AAAAAAA
1 TAAAAAAAA
*
10928125 TATAAAACAA
1 TA-AAAAAAA
*
10928135 -CAAAAAAA
1 TAAAAAAAA
*
10928143 TATAAAAAA
1 TAAAAAAAA
*
10928152 TATAAAAAA
1 TAAAAAAAA
*
10928161 TGAAAAAAA
1 TAAAAAAAA
*
10928170 -AGAAAAAA
1 TAAAAAAAA
10928178 TAAAAAAA
1 TAAAAAAA
10928186 TGAGAAAGGA
Statistics
Matches: 55, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
8 14 0.25
9 34 0.62
10 7 0.13
ACGTcount: A:0.81, C:0.03, G:0.04, T:0.13
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:10929540 original size:34 final size:34
Alignment explanation
Indices: 10929435--10929540 Score: 115
Period size: 34 Copynumber: 3.1 Consensus size: 34
10929425 TTTAATCTCG
10929435 GTCATTTCATTCTCTGACCTACGGTTCAGTCCCA
1 GTCATTTCATTCTCTGACCTACGGTTCAGTCCCA
* * * * * * * *
10929469 GTCTTCTTTAATCTTTGA-CTCATGGTTTAATCTCA
1 GTCAT-TTCATTCTCTGACCT-ACGGTTCAGTCCCA
10929504 GTCATTTCATTCTCTGACCTACGGTTCAGTCCCA
1 GTCATTTCATTCTCTGACCTACGGTTCAGTCCCA
10929538 GTC
1 GTC
10929541 TTTTTTAATC
Statistics
Matches: 53, Mismatches: 16, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
34 28 0.53
35 25 0.47
ACGTcount: A:0.18, C:0.28, G:0.14, T:0.40
Consensus pattern (34 bp):
GTCATTTCATTCTCTGACCTACGGTTCAGTCCCA
Found at i:10929615 original size:38 final size:38
Alignment explanation
Indices: 10929526--10929688 Score: 144
Period size: 38 Copynumber: 4.4 Consensus size: 38
10929516 TCTGACCTAC
* *
10929526 GGTTCAGTCCCAGTC-TTT-TTTAATCTTTA--ACTCGT
1 GGTTTAGTCCCAGTCATTTCATTAAT-TTTATGACTCGT
* * * *
10929561 GATTTAATCCCGGTCATTTCATTAATTTTATGACTTGT
1 GGTTTAGTCCCAGTCATTTCATTAATTTTATGACTCGT
* *
10929599 GGTTTAGTCCCAGTCA--TCTTTAATCTT-TGACTCGT
1 GGTTTAGTCCCAGTCATTTCATTAATTTTATGACTCGT
* * **
10929634 GGTTTAATCCCTA-TCATTTCATTAATTTTTTGACTTAT
1 GGTTTAGTCCC-AGTCATTTCATTAATTTTATGACTCGT
10929672 GGTTTAGTCCCAGTCAT
1 GGTTTAGTCCCAGTCAT
10929689 CTTTAATCTT
Statistics
Matches: 101, Mismatches: 18, Indels: 15
0.75 0.13 0.11
Matches are distributed among these distances:
35 31 0.31
36 17 0.17
37 15 0.15
38 38 0.38
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.46
Consensus pattern (38 bp):
GGTTTAGTCCCAGTCATTTCATTAATTTTATGACTCGT
Found at i:10929624 original size:73 final size:73
Alignment explanation
Indices: 10929272--10929714 Score: 449
Period size: 73 Copynumber: 6.2 Consensus size: 73
10929262 GTCATATTTA
* * * ** * *
10929272 ACTCGCGGTTTAATCTCGATCATTTCATTAATTCTCTGACTTGTGATTCAATCCCAGTCATCTTT
1 ACTCGTGGTTTAATCCCGGTCATTTCATTAATTCTCTGACTTACGGTTCAGTCCCAGTCATCTTT
10929337 -ATCTTTTG
66 AATC-TTTG
* * * * **
10929345 ACTCGTGG-TTAATCCTGGTCATTTCATTAATTGC-CCGACTTGCGATTCAGTCCCAGTTGTCTT
1 ACTCGTGGTTTAATCCCGGTCATTTCATTAATT-CTCTGACTTACGGTTCAGTCCCAGTCATCTT
10929408 TAATCTTTG
65 TAATCTTTG
* * * *
10929417 ACTCGTAGTTTAATCTCGGTCATTTC----ATTCTCTGACCTACGGTTCAGTCCCAGTCTTCTTT
1 ACTCGTGGTTTAATCCCGGTCATTTCATTAATTCTCTGACTTACGGTTCAGTCCCAGTCATCTTT
10929478 AATCTTTG
66 AATCTTTG
* * * * * *
10929486 ACTCATGGTTTAATCTCAGTCATTTC----ATTCTCTGACCTACGGTTCAGTCCCAGTCTTTTTT
1 ACTCGTGGTTTAATCCCGGTCATTTCATTAATTCTCTGACTTACGGTTCAGTCCCAGTCATCTTT
*
10929547 AATCTTTA
66 AATCTTTG
* * * ** *
10929555 ACTCGTGATTTAATCCCGGTCATTTCATTAATTTTATGACTTGTGGTTTAGTCCCAGTCATCTTT
1 ACTCGTGGTTTAATCCCGGTCATTTCATTAATTCTCTGACTTACGGTTCAGTCCCAGTCATCTTT
10929620 AATCTTTG
66 AATCTTTG
** * * * *
10929628 ACTCGTGGTTTAATCCCTATCATTTCATTAATTTTTTGACTTATGGTTTAGTCCCAGTCATCTTT
1 ACTCGTGGTTTAATCCCGGTCATTTCATTAATTCTCTGACTTACGGTTCAGTCCCAGTCATCTTT
10929693 AATCTTTG
66 AATCTTTG
* *
10929701 GCTCATGGTTTAAT
1 ACTCGTGGTTTAAT
10929715 TCTGGTTTCT
Statistics
Matches: 319, Mismatches: 43, Indels: 16
0.84 0.11 0.04
Matches are distributed among these distances:
68 1 0.00
69 121 0.38
72 57 0.18
73 140 0.44
ACGTcount: A:0.20, C:0.22, G:0.14, T:0.44
Consensus pattern (73 bp):
ACTCGTGGTTTAATCCCGGTCATTTCATTAATTCTCTGACTTACGGTTCAGTCCCAGTCATCTTT
AATCTTTG
Found at i:10929653 original size:211 final size:211
Alignment explanation
Indices: 10929318--10929714 Score: 501
Period size: 211 Copynumber: 1.9 Consensus size: 211
10929308 TGACTTGTGA
* * *
10929318 TTCAATCCCAGTCATCTTTATCTTTTGACTCGTGGTTAATCCTGGTCATTTCATTAATTGCCCGA
1 TTCAATCCCAGTCATCTTTATCTTTTAACTCGTGGTTAATCCCGGTCATTTCATTAATTGCACGA
** * *
10929383 CTTGCGATTCAGTCCCAGTTGTCTTTAATCTTTGACTCGTAGTTTAATCTCGGTCATTTC-ATTC
66 CTTGCGATTCAGTCCCAGTCATCTTTAATCTTTGACTCGTAGTTTAATCCCGATCATTTCAATTC
*
10929447 TCTGACCTACGGTTCAGTCCCAGTCTTCTTTAATCTTTGACTCATGGTTTAATCTCAGTCATTTC
131 TCTGACCTACGGTTCAGTCCCAGTCATCTTTAATCTTTGACTCATGGTTTAATCTCAGTCATTTC
10929512 ATTCTCTGACCTACGG
196 ATTCTCTGACCTACGG
* * * * ** *
10929528 TTCAGTCCCAGTCTTTTTTAATC-TTTAACTCGTGATTTAATCCCGGTCATTTCATTAATTTTAT
1 TTCAATCCCAGTCATCTTT-ATCTTTTAACTCGTG-GTTAATCCCGGTCATTTCATTAATTGCAC
* * * * *
10929592 GACTTGTGGTTTAGTCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCCTATCATTTCATT
64 GACTTGCGATTCAGTCCCAGTCATCTTTAATCTTTGACTCGTAGTTTAATCCCGATCATTTC---
* * * * * *
10929657 AATTTTTTGACTTATGGTTTAGTCCCAGTCATCTTTAATCTTTGGCTCATGGTTTAAT
126 AATTCTCTGACCTACGGTTCAGTCCCAGTCATCTTTAATCTTTGACTCATGGTTTAAT
10929715 TCTGGTTTCT
Statistics
Matches: 155, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
210 26 0.17
211 79 0.51
215 50 0.32
ACGTcount: A:0.19, C:0.22, G:0.14, T:0.44
Consensus pattern (211 bp):
TTCAATCCCAGTCATCTTTATCTTTTAACTCGTGGTTAATCCCGGTCATTTCATTAATTGCACGA
CTTGCGATTCAGTCCCAGTCATCTTTAATCTTTGACTCGTAGTTTAATCCCGATCATTTCAATTC
TCTGACCTACGGTTCAGTCCCAGTCATCTTTAATCTTTGACTCATGGTTTAATCTCAGTCATTTC
ATTCTCTGACCTACGG
Found at i:10929711 original size:35 final size:35
Alignment explanation
Indices: 10929393--10929712 Score: 191
Period size: 35 Copynumber: 9.0 Consensus size: 35
10929383 CTTGCGATTC
** * *
10929393 AGTCCCAGTTGTCTTTAATCTTTGACTCGTAGTTT
1 AGTCCCAGTCATCTTTAATCTTTGACTCATGGTTT
* * * * * * * *
10929428 AATCTCGGTCAT-TTCATTCTCTGAC-CTACGGTTC
1 AGTCCCAGTCATCTTTAATCTTTGACTC-ATGGTTT
*
10929462 AGTCCCAGTCTTCTTTAATCTTTGACTCATGGTTT
1 AGTCCCAGTCATCTTTAATCTTTGACTCATGGTTT
* * * * * * *
10929497 AATCTCAGTCAT-TTCATTCTCTGAC-CTACGGTTC
1 AGTCCCAGTCATCTTTAATCTTTGACTC-ATGGTTT
* * * * *
10929531 AGTCCCAGTCTTTTTTAATCTTTAACTCGTGATTT
1 AGTCCCAGTCATCTTTAATCTTTGACTCATGGTTT
* * * * **
10929566 AATCCCGGTCATTTCATTAATTTTATGACTTGTGGTTT
1 AGTCCCAGTCA--TCTTTAATCTT-TGACTCATGGTTT
*
10929604 AGTCCCAGTCATCTTTAATCTTTGACTCGTGGTTT
1 AGTCCCAGTCATCTTTAATCTTTGACTCATGGTTT
* * * *
10929639 AATCCCTA-TCATTTCATTAATTTTTTGACTTATGGTTT
1 AGTCCC-AGTCA--TCTTTAA-TCTTTGACTCATGGTTT
*
10929677 AGTCCCAGTCATCTTTAATCTTTGGCTCATGGTTT
1 AGTCCCAGTCATCTTTAATCTTTGACTCATGGTTT
10929712 A
1 A
10929713 ATTCTGGTTT
Statistics
Matches: 207, Mismatches: 64, Indels: 28
0.69 0.21 0.09
Matches are distributed among these distances:
33 2 0.01
34 45 0.22
35 86 0.42
36 18 0.09
37 15 0.07
38 41 0.20
ACGTcount: A:0.19, C:0.22, G:0.14, T:0.45
Consensus pattern (35 bp):
AGTCCCAGTCATCTTTAATCTTTGACTCATGGTTT
Found at i:10929916 original size:102 final size:102
Alignment explanation
Indices: 10929722--10929919 Score: 263
Period size: 102 Copynumber: 1.9 Consensus size: 102
10929712 AATTCTGGTT
* **
10929722 TCTTTATTCTTCGATTCGCAGTTCAATCCCGATCTCTTTAATTTAAAATCGTAGTTTAATCTCAA
1 TCTTTATTCTCCGATTCGCAGTTCAATCCCGATCTCTTTAATTTAAAATCACAGTTTAATCTCAA
** * *
10929787 TTGTTGTTATTTTTTTACTCATAGTTTAATCCCAATC
66 TTGTTGTTATCCTCTAACTCATAGTTTAATCCCAATC
* * * *
10929824 TCTTTATTCTCCGATTCG-TGATTCAATTCCGATCTCTTTAATTTAAAGTCACAGTTTAATCTCG
1 TCTTTATTCTCCGATTCGCAG-TTCAATCCCGATCTCTTTAATTTAAAATCACAGTTTAATCTCA
* *
10929888 ATTGTTGTTATCCTCTAACTCGTGGTTTAATC
65 ATTGTTGTTATCCTCTAACTCATAGTTTAATC
10929920 TCGGTCTCCT
Statistics
Matches: 82, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
101 1 0.01
102 81 0.99
ACGTcount: A:0.23, C:0.20, G:0.11, T:0.46
Consensus pattern (102 bp):
TCTTTATTCTCCGATTCGCAGTTCAATCCCGATCTCTTTAATTTAAAATCACAGTTTAATCTCAA
TTGTTGTTATCCTCTAACTCATAGTTTAATCCCAATC
Found at i:10930338 original size:14 final size:14
Alignment explanation
Indices: 10930321--10930347 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
10930311 ATTATATAAA
10930321 AATAATAATAAAAC
1 AATAATAATAAAAC
10930335 AATAATAATAAAA
1 AATAATAATAAAA
10930348 TAAAAACCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.22
Consensus pattern (14 bp):
AATAATAATAAAAC
Found at i:10930363 original size:9 final size:9
Alignment explanation
Indices: 10930349--10930378 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
10930339 ATAATAAAAT
10930349 AAAAACCAA
1 AAAAACCAA
10930358 AAAAACCAA
1 AAAAACCAA
10930367 AAAAA-CAA
1 AAAAACCAA
10930375 AAAA
1 AAAA
10930379 TAAATAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 7 0.33
9 14 0.67
ACGTcount: A:0.83, C:0.17, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAACCAA
Found at i:10930378 original size:19 final size:19
Alignment explanation
Indices: 10930330--10930397 Score: 59
Period size: 19 Copynumber: 3.6 Consensus size: 19
10930320 AAATAATAAT
*
10930330 AAAACAATAATAATAAA-ATA
1 AAAACAA-AA-AATAAACAAA
* *
10930350 AAAACCAAAAA-AACCAAA
1 AAAACAAAAAATAAACAAA
*
10930368 AAAACAAAAAATAAATAAA
1 AAAACAAAAAATAAACAAA
*
10930387 AAAATAAAAAA
1 AAAACAAAAAA
10930398 GAGAAAAAAC
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
17 2 0.05
18 14 0.36
19 17 0.44
20 6 0.15
ACGTcount: A:0.81, C:0.09, G:0.00, T:0.10
Consensus pattern (19 bp):
AAAACAAAAAATAAACAAA
Found at i:10930396 original size:35 final size:36
Alignment explanation
Indices: 10930330--10930412 Score: 91
Period size: 35 Copynumber: 2.3 Consensus size: 36
10930320 AAATAATAAT
*
10930330 AAAACAATAATAATAAAATAAAAACCAAAAAAACCA-AA
1 AAAACAA-AA-AATAAAATAAAAA-CAAAAAAAACAGAA
*
10930368 AAAACAAAAAAT-AAATAAAAA-AATAAAAAAGAGAA
1 AAAACAAAAAATAAAATAAAAACAA-AAAAAACAGAA
10930403 AAAACAAAAA
1 AAAACAAAAA
10930413 GTATGGTGGC
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
33 2 0.05
34 6 0.15
35 21 0.51
36 3 0.07
37 2 0.05
38 7 0.17
ACGTcount: A:0.81, C:0.08, G:0.02, T:0.08
Consensus pattern (36 bp):
AAAACAAAAAATAAAATAAAAACAAAAAAAACAGAA
Found at i:10930405 original size:43 final size:43
Alignment explanation
Indices: 10930330--10930412 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
10930320 AAATAATAAT
* * *
10930330 AAAACAATAATAATAAAATAAAAACCAAAAAAACCAAAAAAAC
1 AAAACAATAATAAAAAAATAAAAAACAAAAAAAACAAAAAAAC
* *
10930373 AAAA-AATAAATAAAAAAATAAAAAAGAGAAAAAACAAAAA
1 AAAACAAT-AATAAAAAAATAAAAAACAAAAAAAACAAAAA
10930413 GTATGGTGGC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 3 0.09
43 31 0.91
ACGTcount: A:0.81, C:0.08, G:0.02, T:0.08
Consensus pattern (43 bp):
AAAACAATAATAAAAAAATAAAAAACAAAAAAAACAAAAAAAC
Found at i:10930461 original size:11 final size:11
Alignment explanation
Indices: 10930445--10930509 Score: 62
Period size: 11 Copynumber: 5.8 Consensus size: 11
10930435 CGCCCCCGAC
10930445 CAGCCACCCTA
1 CAGCCACCCTA
*
10930456 CAGCCA-CCGA
1 CAGCCACCCTA
* *
10930466 CCAACTACCCTA
1 -CAGCCACCCTA
10930478 CCAGCC-CACCTA
1 -CAGCCAC-CCTA
10930490 CAGCCACCCTA
1 CAGCCACCCTA
10930501 CAGCCACCC
1 CAGCCACCC
10930510 AAATTCCCCT
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
10 3 0.07
11 29 0.66
12 12 0.27
ACGTcount: A:0.28, C:0.55, G:0.09, T:0.08
Consensus pattern (11 bp):
CAGCCACCCTA
Found at i:10933506 original size:63 final size:63
Alignment explanation
Indices: 10933392--10933522 Score: 162
Period size: 64 Copynumber: 2.1 Consensus size: 63
10933382 TAAAACATTG
* *
10933392 AATCCATTCAAAAAATTTTGGAGATGGAATATTGAAGGCTTTTTTGATCAAAAAC-ACCTTCAAT
1 AATCCATTCAAAAAAATTTGGAGA-GGAATATTGAAAGCTTTTTTGATC-AAAACTACCTTCAAT
*
10933456 AATCCATAT-AAAAAAATTTGGAG-GGAATTATTGAAAGCGTTTTTT-TTCAAAACTACCTTCAA
1 AATCCAT-TCAAAAAAATTTGGAGAGGAA-TATTGAAAGC-TTTTTTGATCAAAACTACCTTCAA
10933518 T
63 T
10933519 AATC
1 AATC
10933523 TAAACAAAAA
Statistics
Matches: 60, Mismatches: 3, Indels: 9
0.83 0.04 0.12
Matches are distributed among these distances:
62 9 0.15
63 24 0.40
64 26 0.43
65 1 0.02
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.34
Consensus pattern (63 bp):
AATCCATTCAAAAAAATTTGGAGAGGAATATTGAAAGCTTTTTTGATCAAAACTACCTTCAAT
Found at i:10933532 original size:63 final size:63
Alignment explanation
Indices: 10933400--10933533 Score: 157
Period size: 63 Copynumber: 2.1 Consensus size: 63
10933390 TGAATCCATT
* * *
10933400 CAAAAAATTTTGGAGATGGAATATTGAAGGCTTTTTTGATCAAAAACACCTTCAATAATCCATA
1 CAAAAAAATTTGGAGA-GGAATATTGAAAGCTTTTTTGATCAAAAACACCTTCAATAATCCAAA
* * *
10933464 TAAAAAAATTTGGAG-GGAATTATTGAAAGCGTTTTTT-TTC-AAAACTACCTTCAATAATCTAA
1 CAAAAAAATTTGGAGAGGAA-TATTGAAAGC-TTTTTTGATCAAAAAC-ACCTTCAATAATCCAA
10933526 A
63 A
10933527 CAAAAAA
1 CAAAAAA
10933534 TTTTATTAAG
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
62 9 0.15
63 32 0.53
64 19 0.32
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.31
Consensus pattern (63 bp):
CAAAAAAATTTGGAGAGGAATATTGAAAGCTTTTTTGATCAAAAACACCTTCAATAATCCAAA
Found at i:10933581 original size:65 final size:62
Alignment explanation
Indices: 10933417--10933588 Score: 159
Period size: 65 Copynumber: 2.7 Consensus size: 62
10933407 TTTTGGAGAT
* * *
10933417 GGAA-TATTGAAGGCT-TTTTTGATCAAAAACACCTTCAATAATCCATATAAAAAAATTTGGAG
1 GGAATTATTGAAGG-TGTTTTTGATC-AAAACACCTTCAATAATCCAAACAAAAAAATTTGAAG
* * ** * * *
10933479 GGAATTATTGAAAGCGTTTTTTTTCAAAACTACCTTCAATAATCTAAACAAAAAATTTTATTAAG
1 GGAATTATTGAAGGTGTTTTTGATCAAAAC-ACCTTCAATAATCCAAACAAAAAA-ATT-TGAAG
* * *
10933544 GGGATTATTGAAGGTGTTTTTGGTCAAAATCATCTTCAATAATCC
1 GGAATTATTGAAGGTGTTTTTGATCAAAA-CACCTTCAATAATCC
10933589 CTCTAAAATA
Statistics
Matches: 87, Mismatches: 17, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
62 9 0.10
63 36 0.41
64 2 0.02
65 39 0.45
66 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (62 bp):
GGAATTATTGAAGGTGTTTTTGATCAAAACACCTTCAATAATCCAAACAAAAAAATTTGAAG
Found at i:10935306 original size:25 final size:25
Alignment explanation
Indices: 10935278--10935327 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
10935268 AAAAGTAATT
10935278 ATAAAGTGAAAAGAAAAAGTTAAGA
1 ATAAAGTGAAAAGAAAAAGTTAAGA
10935303 ATAAAGTGAAAAGAAAAAGTTAAGA
1 ATAAAGTGAAAAGAAAAAGTTAAGA
10935328 GAAAAAGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.20, T:0.16
Consensus pattern (25 bp):
ATAAAGTGAAAAGAAAAAGTTAAGA
Found at i:10935330 original size:13 final size:13
Alignment explanation
Indices: 10935289--10935334 Score: 58
Period size: 13 Copynumber: 3.6 Consensus size: 13
10935279 TAAAGTGAAA
10935289 AGAAAAAGTTAAG
1 AGAAAAAGTTAAG
* * *
10935302 A-ATAAAGTGAAA
1 AGAAAAAGTTAAG
10935314 AGAAAAAGTTAAG
1 AGAAAAAGTTAAG
10935327 AGAAAAAG
1 AGAAAAAG
10935335 ATATGGATGA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
12 9 0.35
13 17 0.65
ACGTcount: A:0.65, C:0.00, G:0.22, T:0.13
Consensus pattern (13 bp):
AGAAAAAGTTAAG
Found at i:10943451 original size:6 final size:6
Alignment explanation
Indices: 10943430--10943467 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
10943420 GGATAAAAAA
*
10943430 TTATTT TT-TAT TTATTT TTATTTT TTATTT TTATTT TT
1 TTATTT TTATTT TTATTT TTA-TTT TTATTT TTATTT TT
10943468 TTTGAAAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
5 4 0.14
6 18 0.64
7 6 0.21
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTATTT
Found at i:10943458 original size:13 final size:13
Alignment explanation
Indices: 10943440--10943468 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
10943430 TTATTTTTTA
10943440 TTTATTTTTATTT
1 TTTATTTTTATTT
10943453 TTTATTTTTATTT
1 TTTATTTTTATTT
10943466 TTT
1 TTT
10943469 TTGAAAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (13 bp):
TTTATTTTTATTT
Found at i:10943738 original size:24 final size:23
Alignment explanation
Indices: 10943695--10943745 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
10943685 ATAAAACCAG
10943695 AAAAATAATAATGATAAAAATACT
1 AAAAATAATAATGATAAAAATA-T
10943719 AAAAATAA-AATGAGCT-AAAATAT
1 AAAAATAATAATGA--TAAAAATAT
10943742 AAAA
1 AAAA
10943746 GCAAATAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
23 10 0.40
24 14 0.56
25 1 0.04
ACGTcount: A:0.69, C:0.04, G:0.06, T:0.22
Consensus pattern (23 bp):
AAAAATAATAATGATAAAAATAT
Done.