Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15507587
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 69 of 91
Found at i:11399592 original size:12 final size:12
Alignment explanation
Indices: 11399577--11399618 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
11399567 ATTCACAAAT
11399577 ATATATAAATAA
1 ATATATAAATAA
**
11399589 ATATATTCATAA
1 ATATATAAATAA
11399601 ATA-ATAAATAA
1 ATATATAAATAA
11399612 AT-TATAA
1 ATATATAA
11399619 TCAAATAAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
11 12 0.48
12 13 0.52
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (12 bp):
ATATATAAATAA
Found at i:11399637 original size:14 final size:15
Alignment explanation
Indices: 11399601--11399643 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 15
11399591 ATATTCATAA
11399601 ATAAT-AAATAAATT
1 ATAATCAAATAAATT
11399615 ATAATCAAATAAACTT
1 ATAATCAAATAAA-TT
11399631 A-AA-CAAATAAATT
1 ATAATCAAATAAATT
11399644 CTAAACGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 2 0.07
14 13 0.48
15 9 0.33
16 3 0.11
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (15 bp):
ATAATCAAATAAATT
Found at i:11399654 original size:15 final size:14
Alignment explanation
Indices: 11399606--11399659 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 14
11399596 CATAAATAAT
*
11399606 AAATAAATTATAATC
1 AAATAAATT-TAAAC
*
11399621 AAATAAACTTAAAC
1 AAATAAATTTAAAC
11399635 AAATAAATTCTAAAC
1 AAATAAATT-TAAAC
11399650 GAATATAAAT
1 -AA-ATAAAT
11399660 AAATTTAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
14 12 0.36
15 13 0.39
16 2 0.06
17 6 0.18
ACGTcount: A:0.61, C:0.09, G:0.02, T:0.28
Consensus pattern (14 bp):
AAATAAATTTAAAC
Found at i:11399662 original size:29 final size:27
Alignment explanation
Indices: 11399597--11399662 Score: 62
Period size: 29 Copynumber: 2.3 Consensus size: 27
11399587 AAATATATTC
* *
11399597 ATAAAT-AATAAATAAATTATAATCAA
1 ATAAATAAACAAATAAATTATAAACAA
*
11399623 ATAAACTTAAACAAATAAATTCTAAACGAA
1 ATAAA--TAAACAAATAAATTATAAAC-AA
11399653 TATAAATAAA
1 -ATAAATAAA
11399663 TTTAAATAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
26 5 0.16
28 1 0.03
29 19 0.59
30 2 0.06
31 5 0.16
ACGTcount: A:0.64, C:0.08, G:0.02, T:0.27
Consensus pattern (27 bp):
ATAAATAAACAAATAAATTATAAACAA
Found at i:11399689 original size:21 final size:21
Alignment explanation
Indices: 11399635--11399689 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 21
11399625 AAACTTAAAC
* * *
11399635 AAATAAATTCTAAACGAATAT
1 AAATAAATTTTAAACAAACAT
*
11399656 AAATAAA-TTTAAATAAACAT
1 AAATAAATTTTAAACAAACAT
11399676 AAATAAATTTTAAA
1 AAATAAATTTTAAA
11399690 ATAAGATTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 16 0.55
21 13 0.45
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (21 bp):
AAATAAATTTTAAACAAACAT
Found at i:11405629 original size:27 final size:28
Alignment explanation
Indices: 11405592--11405644 Score: 74
Period size: 27 Copynumber: 1.9 Consensus size: 28
11405582 TTGTTAATAG
*
11405592 TTGTACATTTTGTTATG-TATAAATATGC
1 TTGTACATTTT-TCATGATATAAATATGC
11405620 TTGTAC-TTTTTCATGATATAAATAT
1 TTGTACATTTTTCATGATATAAATAT
11405645 ATATGATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 4 0.17
27 13 0.57
28 6 0.26
ACGTcount: A:0.30, C:0.08, G:0.11, T:0.51
Consensus pattern (28 bp):
TTGTACATTTTTCATGATATAAATATGC
Found at i:11408955 original size:23 final size:24
Alignment explanation
Indices: 11408910--11408969 Score: 79
Period size: 22 Copynumber: 2.5 Consensus size: 24
11408900 GATTTTTTAT
11408910 ATTTTCCAAAAAAATAATGAAAAAA
1 ATTTT-CAAAAAAATAATGAAAAAA
11408935 ATTTTCAAAAAAA-AA-GAAAAAA
1 ATTTTCAAAAAAATAATGAAAAAA
* *
11408957 TTTTTTAAAAAAA
1 ATTTTCAAAAAAA
11408970 GGGGGATTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
22 18 0.55
23 2 0.06
24 8 0.24
25 5 0.15
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.27
Consensus pattern (24 bp):
ATTTTCAAAAAAATAATGAAAAAA
Found at i:11410040 original size:57 final size:57
Alignment explanation
Indices: 11409948--11410061 Score: 210
Period size: 57 Copynumber: 2.0 Consensus size: 57
11409938 ATAGAGCCCC
* *
11409948 AAGTTGTCTTTTAGTATACTTCCTTTGCATCTGAGTTTGGCAAAACCTTTGAAAAGT
1 AAGTTGTCTTTTAGTATACTTCCTTTGCATATGAGTTTAGCAAAACCTTTGAAAAGT
11410005 AAGTTGTCTTTTAGTATACTTCCTTTGCATATGAGTTTAGCAAAACCTTTGAAAAGT
1 AAGTTGTCTTTTAGTATACTTCCTTTGCATATGAGTTTAGCAAAACCTTTGAAAAGT
11410062 TCAATATGGG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (57 bp):
AAGTTGTCTTTTAGTATACTTCCTTTGCATATGAGTTTAGCAAAACCTTTGAAAAGT
Found at i:11411730 original size:29 final size:27
Alignment explanation
Indices: 11411685--11411749 Score: 78
Period size: 30 Copynumber: 2.3 Consensus size: 27
11411675 ATGTGTGAAG
*
11411685 AAAAAAAAAGGCAAAGCAAA-ATAAAA
1 AAAAAAAAAGGCAAAGCAAACAAAAAA
*
11411711 CAAAAAAAAGGCAAAGAAGCAAACAAAAAA
1 AAAAAAAAAGGC--A-AAGCAAACAAAAAA
11411741 AAAAAAAAA
1 AAAAAAAAA
11411750 CAAGGCAAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 11 0.34
28 1 0.03
29 7 0.22
30 13 0.41
ACGTcount: A:0.78, C:0.09, G:0.11, T:0.02
Consensus pattern (27 bp):
AAAAAAAAAGGCAAAGCAAACAAAAAA
Found at i:11411741 original size:26 final size:25
Alignment explanation
Indices: 11411685--11411746 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 25
11411675 ATGTGTGAAG
11411685 AAAAAAAAAGGCAAAGCAAAATAAA
1 AAAAAAAAAGGCAAAGCAAAATAAA
* *
11411710 ACAAAAAAAAGGCAAAGAAGCAAACAAA
1 A-AAAAAAAAGGCAAAGCA--AAATAAA
11411738 AAAAAAAAA
1 AAAAAAAAA
11411747 AAACAAGGCA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 1 0.03
26 16 0.50
27 8 0.25
28 7 0.22
ACGTcount: A:0.77, C:0.10, G:0.11, T:0.02
Consensus pattern (25 bp):
AAAAAAAAAGGCAAAGCAAAATAAA
Found at i:11411763 original size:29 final size:29
Alignment explanation
Indices: 11411685--11411777 Score: 82
Period size: 29 Copynumber: 3.2 Consensus size: 29
11411675 ATGTGTGAAG
* *
11411685 AAAAAAA-AAGGCAAAGCAAAATAAAACAAA
1 AAAAAAACAAGGC-AAG-AAAACAAAAAAAA
** * *
11411715 AAAAAGGCAAAG-AAGCAAACAAAAAAAA
1 AAAAAAACAAGGCAAGAAAACAAAAAAAA
* *
11411743 AAAAAAACAAGGCAAGAAAACAATAAAAG
1 AAAAAAACAAGGCAAGAAAACAAAAAAAA
11411772 AAAAAA
1 AAAAAA
11411778 TAAAAAATGA
Statistics
Matches: 49, Mismatches: 12, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
28 19 0.39
29 22 0.45
30 5 0.10
31 3 0.06
ACGTcount: A:0.76, C:0.10, G:0.12, T:0.02
Consensus pattern (29 bp):
AAAAAAACAAGGCAAGAAAACAAAAAAAA
Found at i:11411770 original size:28 final size:31
Alignment explanation
Indices: 11411703--11411777 Score: 77
Period size: 32 Copynumber: 2.5 Consensus size: 31
11411693 AGGCAAAGCA
*
11411703 AAATAAAACAAAAAAAAGGCAAAGAAGCAAAC
1 AAATAAAAAAAAAAAAAGGCAAAGAA-CAAAC
*
11411735 AAAAAAAAAAAAAAACAAGGC-AAG-A-AAAC
1 AAATAAAAAAAAAAA-AAGGCAAAGAACAAAC
*
11411764 -AATAAAAGAAAAAA
1 AAATAAAAAAAAAAA
11411778 TAAAAAATGA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
28 12 0.32
29 4 0.11
31 1 0.03
32 16 0.42
33 5 0.13
ACGTcount: A:0.77, C:0.09, G:0.11, T:0.03
Consensus pattern (31 bp):
AAATAAAAAAAAAAAAAGGCAAAGAACAAAC
Found at i:11415402 original size:29 final size:29
Alignment explanation
Indices: 11415365--11415446 Score: 98
Period size: 29 Copynumber: 2.9 Consensus size: 29
11415355 TAAAGTATGT
* *
11415365 TTTATGGTTTAAGGTTTT-AGGATTTA-GGA
1 TTTAGGGTTT-AGGTTTTAAAG-TTTATGGA
*
11415394 TTTAGGGTTTAGGTTTTAAAGTTTATGGT
1 TTTAGGGTTTAGGTTTTAAAGTTTATGGA
11415423 TTTAGGGTTTAGG-TTTAAAGTTTA
1 TTTAGGGTTTAGGTTTTAAAGTTTA
11415447 GGGTATATAT
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
28 22 0.46
29 26 0.54
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (29 bp):
TTTAGGGTTTAGGTTTTAAAGTTTATGGA
Found at i:11415438 original size:35 final size:36
Alignment explanation
Indices: 11415387--11415528 Score: 103
Period size: 35 Copynumber: 4.0 Consensus size: 36
11415377 GGTTTTAGGA
* *
11415387 TTTAGGATTTAGGGTTT-AGGTTTTAAAGTTTATGGT
1 TTTAGGGTTTAGGGTTTAAAG-TTTAAAGTTTATGGT
** * **
11415423 TTTAGGGTTTA-GGTTTAAAGTTTAGGGTATATATT
1 TTTAGGGTTTAGGGTTTAAAGTTTAAAGTTTATGGT
** *
11415458 TTTAGGGTTTAGGGTTTATGGTTTTACAGTTTA-GG-
1 TTTAGGGTTTAGGGTTTAAAG-TTTAAAGTTTATGGT
* * * *
11415493 GTTAGAGTTTAAGGTTTCAAGTTTAAAGTTTTATGG
1 TTTAGGGTTTAGGGTTTAAAGTTTAAAG-TTTATGG
11415529 AATTTGGGGT
Statistics
Matches: 80, Mismatches: 21, Indels: 10
0.72 0.19 0.09
Matches are distributed among these distances:
34 6 0.08
35 45 0.56
36 21 0.26
37 8 0.10
ACGTcount: A:0.23, C:0.01, G:0.27, T:0.48
Consensus pattern (36 bp):
TTTAGGGTTTAGGGTTTAAAGTTTAAAGTTTATGGT
Found at i:11415481 original size:14 final size:13
Alignment explanation
Indices: 11415365--11415439 Score: 60
Period size: 14 Copynumber: 5.3 Consensus size: 13
11415355 TAAAGTATGT
*
11415365 TTTATGGTTTAAGG
1 TTTAGGGTTT-AGG
*
11415379 TTTTAGGATTTAGG
1 -TTTAGGGTTTAGG
11415393 ATTTAGGGTTTAGG
1 -TTTAGGGTTTAGG
**
11415407 TTTTAAAGTTTATGG
1 -TTTAGGGTTTA-GG
11415422 TTTTAGGGTTTAGG
1 -TTTAGGGTTTAGG
11415436 TTTA
1 TTTA
11415440 AAGTTTAGGG
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
13 4 0.08
14 26 0.52
15 20 0.40
ACGTcount: A:0.21, C:0.00, G:0.28, T:0.51
Consensus pattern (13 bp):
TTTAGGGTTTAGG
Found at i:11415489 original size:22 final size:22
Alignment explanation
Indices: 11415423--11415495 Score: 78
Period size: 22 Copynumber: 3.4 Consensus size: 22
11415413 AGTTTATGGT
11415423 TTTAGGGTTTA-GG-TTTAAAG
1 TTTAGGGTTTATGGTTTTAAAG
* ** **
11415443 TTTAGGGTATATATTTTTAGGG
1 TTTAGGGTTTATGGTTTTAAAG
*
11415465 TTTAGGGTTTATGGTTTTACAG
1 TTTAGGGTTTATGGTTTTAAAG
11415487 TTTAGGGTT
1 TTTAGGGTT
11415496 AGAGTTTAAG
Statistics
Matches: 41, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
20 10 0.24
22 31 0.76
ACGTcount: A:0.21, C:0.01, G:0.29, T:0.49
Consensus pattern (22 bp):
TTTAGGGTTTATGGTTTTAAAG
Found at i:11416219 original size:11 final size:11
Alignment explanation
Indices: 11416203--11416242 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
11416193 GAAAAATCAA
11416203 TATGAAAATGT
1 TATGAAAATGT
11416214 TATGAAAATGT
1 TATGAAAATGT
* *
11416225 GATGAATATGT
1 TATGAAAATGT
*
11416236 AATGAAA
1 TATGAAA
11416243 TGTAAGAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.47, C:0.00, G:0.20, T:0.33
Consensus pattern (11 bp):
TATGAAAATGT
Found at i:11417827 original size:49 final size:49
Alignment explanation
Indices: 11417713--11417856 Score: 198
Period size: 49 Copynumber: 2.9 Consensus size: 49
11417703 TTAAAAAGGG
* * * * * *
11417713 TCCTATAAAGATAGGTAACAAACTTTAAGAATTTCATTTTAAAAAAGGGC
1 TCCTATAAAGATAGGCAATAAACTTTAAAAATCTCATTTT-GAAAAGAGC
* *
11417763 TCATATAAAGATAGGCAATAAACTTTAAAAATCTCATTTTGAAAAGAGT
1 TCCTATAAAGATAGGCAATAAACTTTAAAAATCTCATTTTGAAAAGAGC
*
11417812 TCCTATAAAGATAGGCAATAAACTTTAAAAATCTTATTTTGAAAA
1 TCCTATAAAGATAGGCAATAAACTTTAAAAATCTCATTTTGAAAA
11417857 AATCTTATTT
Statistics
Matches: 84, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
49 49 0.58
50 35 0.42
ACGTcount: A:0.46, C:0.11, G:0.12, T:0.31
Consensus pattern (49 bp):
TCCTATAAAGATAGGCAATAAACTTTAAAAATCTCATTTTGAAAAGAGC
Found at i:11417872 original size:15 final size:16
Alignment explanation
Indices: 11417838--11417872 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
11417828 AATAAACTTT
11417838 AAAAATCTTATTTTGA
1 AAAAATCTTATTTTGA
11417854 AAAAATCTTATTTTGA
1 AAAAATCTTATTTTGA
11417870 AAA
1 AAA
11417873 TGTTGGCTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.40
Consensus pattern (16 bp):
AAAAATCTTATTTTGA
Found at i:11418147 original size:12 final size:13
Alignment explanation
Indices: 11418098--11418147 Score: 59
Period size: 12 Copynumber: 3.8 Consensus size: 13
11418088 ATTTCTTTTA
11418098 TTTTTTGTTTT-G
1 TTTTTTGTTTTGG
*
11418110 TTTTTTGTTGTTGT
1 TTTTTTGTT-TTGG
11418124 TTTTGTTGTTTTGG
1 TTTT-TTGTTTTGG
11418138 TTTTTT-TTTT
1 TTTTTTGTTTT
11418148 TCTGTCCTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
12 13 0.39
13 4 0.12
14 11 0.33
15 5 0.15
ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82
Consensus pattern (13 bp):
TTTTTTGTTTTGG
Found at i:11421434 original size:19 final size:19
Alignment explanation
Indices: 11421398--11421433 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
11421388 TAATAAAATT
*
11421398 TTCTTTTTATTTATTTTTG
1 TTCTTCTTATTTATTTTTG
11421417 TTCTTCTTATTT-TTTTT
1 TTCTTCTTATTTATTTTT
11421434 TACATGCTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.08, C:0.08, G:0.03, T:0.81
Consensus pattern (19 bp):
TTCTTCTTATTTATTTTTG
Found at i:11422105 original size:21 final size:24
Alignment explanation
Indices: 11422079--11422121 Score: 65
Period size: 21 Copynumber: 1.9 Consensus size: 24
11422069 AAAGAAAACC
11422079 TTCTCTTT-TTT-TT-TTTTTCTT
1 TTCTCTTTATTTCTTGTTTTTCTT
11422100 TTCTCTTTATTTCTTGTTTTTC
1 TTCTCTTTATTTCTTGTTTTTC
11422122 AAGGCACTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 3 0.16
23 2 0.11
24 6 0.32
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.79
Consensus pattern (24 bp):
TTCTCTTTATTTCTTGTTTTTCTT
Found at i:11422772 original size:37 final size:36
Alignment explanation
Indices: 11422717--11422861 Score: 132
Period size: 37 Copynumber: 3.9 Consensus size: 36
11422707 TAACATTATC
*
11422717 TTAAGATATGCAATGAAATAAAGTGCATGTATTAGCTA
1 TTAAGATATGC-ATGAAATAAA-TGCATGTATTATCTA
* * * * *
11422755 TTAAGATGTGCATGAAATGGAATGTATGTACTATTTA
1 TTAAGATATGCATGAAAT-AAATGCATGTATTATCTA
*
11422792 TT-AGAATGTGCATGAAATAGAATGCATGTATTATCTA
1 TTAAG-ATATGCATGAAATA-AATGCATGTATTATCTA
* *
11422829 TTAATATATGCAT-AAGATGGAATGCATGTATTA
1 TTAAGATATGCATGAA-AT-AAATGCATGTATTA
11422862 AGATGCGTGT
Statistics
Matches: 88, Mismatches: 13, Indels: 13
0.77 0.11 0.11
Matches are distributed among these distances:
36 4 0.05
37 71 0.81
38 13 0.15
ACGTcount: A:0.39, C:0.07, G:0.19, T:0.35
Consensus pattern (36 bp):
TTAAGATATGCATGAAATAAATGCATGTATTATCTA
Found at i:11422912 original size:37 final size:37
Alignment explanation
Indices: 11422871--11423087 Score: 163
Period size: 37 Copynumber: 5.9 Consensus size: 37
11422861 AAGATGCGTG
* * * *
11422871 TGAGATAGAATGCGTGTACTATCTATTATGATGTACA
1 TGAGATAGAATACATGTATTATCTATTATGATGTGCA
** * * *
11422908 TGAGATA-AATTACATGTGCTATTTACTAAGATGTGCA
1 TGAGATAGAA-TACATGTATTATCTATTATGATGTGCA
* * * * * * *
11422945 TGAGATGGAATGCATATA-TGTCCATTATAATGTACA
1 TGAGATAGAATACATGTATTATCTATTATGATGTGCA
* *
11422981 TG-GA-ACAAACTACATGTATTATCTATTATGATATGCA
1 TGAGATA-GAA-TACATGTATTATCTATTATGATGTGCA
* * * *
11423018 TGAGATGGACTACATGTATTATCTATTATTATATGCA
1 TGAGATAGAATACATGTATTATCTATTATGATGTGCA
* *
11423055 TTAGATAGAATATATGTATTATCTATTATGATG
1 TGAGATAGAATACATGTATTATCTATTATGATG
11423088 CACCTGGATG
Statistics
Matches: 136, Mismatches: 37, Indels: 14
0.73 0.20 0.07
Matches are distributed among these distances:
35 4 0.03
36 21 0.15
37 106 0.78
38 5 0.04
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (37 bp):
TGAGATAGAATACATGTATTATCTATTATGATGTGCA
Found at i:11425116 original size:14 final size:13
Alignment explanation
Indices: 11425097--11425186 Score: 54
Period size: 14 Copynumber: 6.3 Consensus size: 13
11425087 TAGAGTATGT
*
11425097 TTTAGGGTTTAAGG
1 TTTA-GGTTTAGGG
*
11425111 TTTAGGATTAGGG
1 TTTAGGTTTAGGG
*
11425124 TTTTAGGATTTAGGA
1 -TTTAGG-TTTAGGG
* *
11425139 TATAGGATTTTAGAG
1 TTTAGG--TTTAGGG
11425154 TTTAGGATTTAGGG
1 TTTAGG-TTTAGGG
*
11425168 TTTCAAGGTTTAGAG
1 TTT--AGGTTTAGGG
11425183 TTTA
1 TTTA
11425187 AAGTTTAAAG
Statistics
Matches: 59, Mismatches: 12, Indels: 11
0.72 0.15 0.13
Matches are distributed among these distances:
13 8 0.14
14 24 0.41
15 24 0.41
16 3 0.05
ACGTcount: A:0.26, C:0.01, G:0.30, T:0.43
Consensus pattern (13 bp):
TTTAGGTTTAGGG
Found at i:11425186 original size:22 final size:21
Alignment explanation
Indices: 11425097--11425180 Score: 98
Period size: 22 Copynumber: 3.9 Consensus size: 21
11425087 TAGAGTATGT
11425097 TTTAGGGTTTAAGGTTTAGGA
1 TTTAGGGTTTAAGGTTTAGGA
*
11425118 -TTAGGGTTTTAGGATTTAGGA
1 TTTAGGGTTTAAGG-TTTAGGA
* * *
11425139 TATAGGATTTTAGAGTTTAGGA
1 TTTAGGGTTTAAG-GTTTAGGA
11425161 TTTAGGGTTTCAAGGTTTAG
1 TTTAGGGTTT-AAGGTTTAG
11425181 AGTTTAAAGT
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
20 12 0.23
21 7 0.13
22 31 0.58
23 3 0.06
ACGTcount: A:0.25, C:0.01, G:0.31, T:0.43
Consensus pattern (21 bp):
TTTAGGGTTTAAGGTTTAGGA
Found at i:11430005 original size:83 final size:83
Alignment explanation
Indices: 11429792--11430011 Score: 219
Period size: 83 Copynumber: 2.6 Consensus size: 83
11429782 GATGTCGAGG
* * * * ** * *
11429792 TTTATAAGACCTTTAAACATTATCTCTAAGTCCTTTAAGCAAGATTTGTAAGTCTTTCGAGTTGA
1 TTTATAAGACC-TTAAATATAATTTCTAAGTCCTCTAAGCAAGATTCATAAGTCTTTCGAGCTAA
*
11429857 ATCTATTTTAATGTCAAGA
65 ATCTATTTTAATATCAAGA
* * * * * * *
11429876 TTTACAAGACCTTCGAGTATAATTTATAAGTCTTCTAAACACGATTCATAAGTCTTTCGAGCTAA
1 TTTATAAGACCTT-AAATATAATTTCTAAGTCCTCTAAGCAAGATTCATAAGTCTTTCGAGCTAA
*
11429941 AT-TATTTTAGTATCGAA-A
65 ATCTATTTTAATATC-AAGA
* *
11429959 TTTATAAGACCTCTAAATATAATTTCTAAGTCCTCCAGGCAAGATTCATAAGT
1 TTTATAAGACCT-TAAATATAATTTCTAAGTCCTCTAAGCAAGATTCATAAGT
11430012 TTTGTAAGTT
Statistics
Matches: 107, Mismatches: 26, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
83 55 0.51
84 52 0.49
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (83 bp):
TTTATAAGACCTTAAATATAATTTCTAAGTCCTCTAAGCAAGATTCATAAGTCTTTCGAGCTAAA
TCTATTTTAATATCAAGA
Found at i:11449900 original size:15 final size:15
Alignment explanation
Indices: 11449880--11449908 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
11449870 AATAATGTGT
11449880 TATAGAGCAACAGAA
1 TATAGAGCAACAGAA
11449895 TATAGAGCAACAGA
1 TATAGAGCAACAGA
11449909 CACTTATCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.52, C:0.14, G:0.21, T:0.14
Consensus pattern (15 bp):
TATAGAGCAACAGAA
Found at i:11451094 original size:28 final size:28
Alignment explanation
Indices: 11451062--11451158 Score: 70
Period size: 28 Copynumber: 3.2 Consensus size: 28
11451052 TAAATGACAA
11451062 TAACAAAAGAAATAAAACACTTTCTGAC
1 TAACAAAAGAAATAAAACACTTTCTGAC
* * ***
11451090 TAACAAACCTGAAAATAGAGAATA-TAAATGAC
1 TAACAAA--AG-AAATA-A-AACACTTTCTGAC
*
11451122 AATAACAAAAGAAATAAAGCACTTTCTGAC
1 --TAACAAAAGAAATAAAACACTTTCTGAC
11451152 TAACAAA
1 TAACAAA
11451159 CCTGAAAATG
Statistics
Matches: 50, Mismatches: 11, Indels: 16
0.65 0.14 0.21
Matches are distributed among these distances:
28 14 0.28
29 2 0.04
30 7 0.14
31 10 0.20
32 7 0.14
33 3 0.06
34 7 0.14
ACGTcount: A:0.56, C:0.15, G:0.09, T:0.20
Consensus pattern (28 bp):
TAACAAAAGAAATAAAACACTTTCTGAC
Found at i:11451118 original size:62 final size:62
Alignment explanation
Indices: 11451048--11451174 Score: 236
Period size: 62 Copynumber: 2.0 Consensus size: 62
11451038 TCATAAAGCA
11451048 AATATAAATGACAATAACAAAAGAAATAAAACACTTTCTGACTAACAAACCTGAAAATAGAG
1 AATATAAATGACAATAACAAAAGAAATAAAACACTTTCTGACTAACAAACCTGAAAATAGAG
* *
11451110 AATATAAATGACAATAACAAAAGAAATAAAGCACTTTCTGACTAACAAACCTGAAAATGGAG
1 AATATAAATGACAATAACAAAAGAAATAAAACACTTTCTGACTAACAAACCTGAAAATAGAG
11451172 AAT
1 AAT
11451175 TGTAGGTTTA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.55, C:0.14, G:0.11, T:0.20
Consensus pattern (62 bp):
AATATAAATGACAATAACAAAAGAAATAAAACACTTTCTGACTAACAAACCTGAAAATAGAG
Found at i:11453273 original size:3 final size:3
Alignment explanation
Indices: 11453267--11453297 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
11453257 ATTTTTTTAT
11453267 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
11453298 CCCTCTCTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:11454517 original size:238 final size:238
Alignment explanation
Indices: 11454091--11454538 Score: 725
Period size: 238 Copynumber: 1.9 Consensus size: 238
11454081 TTTTGTCACA
* * * *
11454091 AACAACATGGTATGGTAACTGACCTCAAGGGGATGTTATTGCAGGGCTCATTTTACAAACCTCTG
1 AACAACATGGTATGGTAACTGACCTCAAGGGAACGTTATTGCAGGGCTCACTTTACAAACCTCTA
*
11454156 CGTTGAATCCGCAATCCATTAGAAGCAGCAACCATGCTCTTTGTTGTTAAGAGAGTTGATCTCTG
66 CGATGAATCCGCAATCCATTAGAAGCAGCAACCATGCTCTTTGTTGTTAAGAGAGTTGATCTCTG
* * * ** * *
11454221 GGGCCCTTCACCTCGACAAGTTTTGCTTTGCCTTTGTAATCGCCGTGGAAGAGCCAGAGCAACAA
131 GGGCCCTTAACCTCAACAAGTTTGGCTTCACCTTTGTAATCGCCATGGAAGAGCCAGAGAAACAA
11454286 ATCTGGCATTCCACTGGAACCAGCTCTGATAATCTGCAATCTG
196 ATCTGGCATTCCACTGGAACCAGCTCTGATAATCTGCAATCTG
* *
11454329 AACAACATGGTATGGTAATTGACCTCAAGGGAACGTTATTGCAGGGCTCACTTTGCAAACCTCTA
1 AACAACATGGTATGGTAACTGACCTCAAGGGAACGTTATTGCAGGGCTCACTTTACAAACCTCTA
* *
11454394 CGATGAATCCGCAATCCATTAGAAGCAGTAACCATGCTCTTTGTTGTTCAGAGAGTTGATCTCTG
66 CGATGAATCCGCAATCCATTAGAAGCAGCAACCATGCTCTTTGTTGTTAAGAGAGTTGATCTCTG
* * *
11454459 GGGCCCTTAACTTCAACAAGTTTGGCTTCACCTTTGTAGTCGCCATGGAAGCGCCAGAGAAACAA
131 GGGCCCTTAACCTCAACAAGTTTGGCTTCACCTTTGTAATCGCCATGGAAGAGCCAGAGAAACAA
11454524 ATCTGGCATTCCACT
196 ATCTGGCATTCCACT
11454539 AGACCAACTG
Statistics
Matches: 191, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
238 191 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (238 bp):
AACAACATGGTATGGTAACTGACCTCAAGGGAACGTTATTGCAGGGCTCACTTTACAAACCTCTA
CGATGAATCCGCAATCCATTAGAAGCAGCAACCATGCTCTTTGTTGTTAAGAGAGTTGATCTCTG
GGGCCCTTAACCTCAACAAGTTTGGCTTCACCTTTGTAATCGCCATGGAAGAGCCAGAGAAACAA
ATCTGGCATTCCACTGGAACCAGCTCTGATAATCTGCAATCTG
Found at i:11483825 original size:28 final size:28
Alignment explanation
Indices: 11483793--11483855 Score: 126
Period size: 28 Copynumber: 2.2 Consensus size: 28
11483783 AGTTATGGAC
11483793 ATTTTTCTAGAGATGTCATAATCAATAT
1 ATTTTTCTAGAGATGTCATAATCAATAT
11483821 ATTTTTCTAGAGATGTCATAATCAATAT
1 ATTTTTCTAGAGATGTCATAATCAATAT
11483849 ATTTTTC
1 ATTTTTC
11483856 ATCCCACCTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.33, C:0.11, G:0.10, T:0.46
Consensus pattern (28 bp):
ATTTTTCTAGAGATGTCATAATCAATAT
Found at i:11494288 original size:28 final size:25
Alignment explanation
Indices: 11494256--11494345 Score: 76
Period size: 28 Copynumber: 3.4 Consensus size: 25
11494246 AATTACATGA
11494256 ATTGAATTAAATTCTAAATTCAATTGTG
1 ATTGAATTAAATT-TAAATT-AATT-TG
* * *
11494284 ATTGAGTTAAA-TTATATTAA-CTG
1 ATTGAATTAAATTTAAATTAATTTG
11494307 ATTGAATTAAATTTTAAATTTAATCTTG
1 ATTGAATTAAA-TTTAAA-TTAAT-TTG
*
11494335 ATTGAGTTAAA
1 ATTGAATTAAA
11494346 CTGAGAGATA
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
23 12 0.24
25 6 0.12
26 9 0.18
27 1 0.02
28 22 0.44
ACGTcount: A:0.40, C:0.04, G:0.11, T:0.44
Consensus pattern (25 bp):
ATTGAATTAAATTTAAATTAATTTG
Found at i:11494535 original size:11 final size:12
Alignment explanation
Indices: 11494510--11494535 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
11494500 ACATACAGGG
11494510 AAAATTTTATAA
1 AAAATTTTATAA
11494522 AAAATTTTATAA
1 AAAATTTTATAA
11494534 AA
1 AA
11494536 TGAAAGTGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
AAAATTTTATAA
Found at i:11498360 original size:2 final size:2
Alignment explanation
Indices: 11498353--11498379 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
11498343 ACATGCAGAC
11498353 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
11498380 AAATGATGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:11503455 original size:16 final size:16
Alignment explanation
Indices: 11503424--11503492 Score: 65
Period size: 16 Copynumber: 4.5 Consensus size: 16
11503414 TTTTATTTTA
**
11503424 TAAAATTTAATTTAAT
1 TAAAATTTAAAATAAT
* *
11503440 TTAATTTTAAAATAAT
1 TAAAATTTAAAATAAT
11503456 TAAAATTTAAAATAAT
1 TAAAATTTAAAATAAT
11503472 T---ATCTTAAAA-AAT
1 TAAAAT-TTAAAATAAT
11503485 TAAAATTT
1 TAAAATTT
11503493 TTTTATTAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 9
0.74 0.10 0.16
Matches are distributed among these distances:
13 6 0.14
14 6 0.14
15 2 0.05
16 29 0.67
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (16 bp):
TAAAATTTAAAATAAT
Found at i:11510572 original size:26 final size:26
Alignment explanation
Indices: 11510532--11510590 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
11510522 CAAATTAAAA
11510532 AATAAAAATCTAAAA-TAAAAGAAATT
1 AATAAAAATCTAAAATTAAAA-AAATT
* *
11510558 ATTAAAAAT-TAAAAATTAATAAAATT
1 AATAAAAATCT-AAAATTAAAAAAATT
11510584 AATAAAA
1 AATAAAA
11510591 GAGTTCATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
25 1 0.04
26 23 0.82
27 4 0.14
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (26 bp):
AATAAAAATCTAAAATTAAAAAAATT
Found at i:11511854 original size:54 final size:55
Alignment explanation
Indices: 11511791--11511905 Score: 160
Period size: 55 Copynumber: 2.1 Consensus size: 55
11511781 ATAAATTTTT
* * *
11511791 TAAAAATATAAATTTATATAATTTT-AAAAATGTTATTAAATATTTTTTTAAAAA
1 TAAAAATATAAATTTATACAATTTTAAAAAATATTATTAAATATTTTTTAAAAAA
* * *
11511845 TAAAAATATACATTTTTACAATTTTAAAAAATATTATTATATATTTTTTAAAAAA
1 TAAAAATATAAATTTATACAATTTTAAAAAATATTATTAAATATTTTTTAAAAAA
*
11511900 GAAAAA
1 TAAAAA
11511906 AATTAAAAAG
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
54 22 0.42
55 31 0.58
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (55 bp):
TAAAAATATAAATTTATACAATTTTAAAAAATATTATTAAATATTTTTTAAAAAA
Found at i:11512020 original size:7 final size:7
Alignment explanation
Indices: 11512008--11512032 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
11511998 TTAAATATTT
11512008 AAAAATA
1 AAAAATA
11512015 AAAAATA
1 AAAAATA
11512022 AAAAATA
1 AAAAATA
11512029 AAAA
1 AAAA
11512033 GAAGAAAACG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATA
Found at i:11513176 original size:2 final size:2
Alignment explanation
Indices: 11513169--11513201 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
11513159 TGTCAAAAGC
*
11513169 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
11513202 ACTATAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:11519321 original size:44 final size:44
Alignment explanation
Indices: 11519190--11519323 Score: 136
Period size: 44 Copynumber: 3.0 Consensus size: 44
11519180 GTTCATGTAA
11519190 AATTGAATCTAAAGTTTAATTTGATTTTCGCAATTTTTTTTTAT
1 AATTGAATCTAAAGTTTAATTTGATTTTCGCAATTTTTTTTTAT
* * * *
11519234 AAGATGATATTTAATAAGTTTAA---GA-TTT--AAATTTTAGTATTTAT
1 AA-TTGA-ATCT-A-AAGTTTAATTTGATTTTCGCAATTTT--TTTTTAT
11519278 AATTGAATCTAAAGTTTAATTTGATTTTCGCAATTTTTTTTTAT
1 AATTGAATCTAAAGTTTAATTTGATTTTCGCAATTTTTTTTTAT
11519322 AA
1 AA
11519324 GATGATATTT
Statistics
Matches: 70, Mismatches: 8, Indels: 24
0.69 0.08 0.24
Matches are distributed among these distances:
40 8 0.11
41 1 0.01
42 9 0.13
43 5 0.07
44 24 0.34
45 5 0.07
46 9 0.13
47 1 0.01
48 8 0.11
ACGTcount: A:0.34, C:0.04, G:0.10, T:0.51
Consensus pattern (44 bp):
AATTGAATCTAAAGTTTAATTTGATTTTCGCAATTTTTTTTTAT
Found at i:11519339 original size:88 final size:88
Alignment explanation
Indices: 11519190--11519369 Score: 360
Period size: 88 Copynumber: 2.0 Consensus size: 88
11519180 GTTCATGTAA
11519190 AATTGAATCTAAAGTTTAATTTGATTTTCGCAATTTTTTTTTATAAGATGATATTTAATAAGTTT
1 AATTGAATCTAAAGTTTAATTTGATTTTCGCAATTTTTTTTTATAAGATGATATTTAATAAGTTT
11519255 AAGATTTAAATTTTAGTATTTAT
66 AAGATTTAAATTTTAGTATTTAT
11519278 AATTGAATCTAAAGTTTAATTTGATTTTCGCAATTTTTTTTTATAAGATGATATTTAATAAGTTT
1 AATTGAATCTAAAGTTTAATTTGATTTTCGCAATTTTTTTTTATAAGATGATATTTAATAAGTTT
11519343 AAGATTTAAATTTTAGTATTTAT
66 AAGATTTAAATTTTAGTATTTAT
11519366 AATT
1 AATT
11519370 CTATCTTCTA
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 92 1.00
ACGTcount: A:0.36, C:0.03, G:0.10, T:0.51
Consensus pattern (88 bp):
AATTGAATCTAAAGTTTAATTTGATTTTCGCAATTTTTTTTTATAAGATGATATTTAATAAGTTT
AAGATTTAAATTTTAGTATTTAT
Found at i:11519365 original size:44 final size:44
Alignment explanation
Indices: 11519229--11519367 Score: 146
Period size: 44 Copynumber: 3.2 Consensus size: 44
11519219 GCAATTTTTT
11519229 TTTATAAGATGATATTTAATAAGTTTAAGATTTAAATTTTAGTA
1 TTTATAAGATGATATTTAATAAGTTTAAGATTTAAATTTTAGTA
* * * *
11519273 TTTATAA-TTGA-ATCT-A-AAGTTTAATTTGATTTTCGCAATTTT--TT
1 TTTATAAGATGATATTTAATAAGTTTAA---GA-TTT--AAATTTTAGTA
11519317 TTTATAAGATGATATTTAATAAGTTTAAGATTTAAATTTTAGTA
1 TTTATAAGATGATATTTAATAAGTTTAAGATTTAAATTTTAGTA
11519361 TTTATAA
1 TTTATAA
11519368 TTCTATCTTC
Statistics
Matches: 75, Mismatches: 8, Indels: 24
0.70 0.07 0.22
Matches are distributed among these distances:
40 8 0.11
41 1 0.01
42 9 0.12
43 5 0.07
44 29 0.39
45 5 0.07
46 9 0.12
47 1 0.01
48 8 0.11
ACGTcount: A:0.37, C:0.02, G:0.10, T:0.50
Consensus pattern (44 bp):
TTTATAAGATGATATTTAATAAGTTTAAGATTTAAATTTTAGTA
Found at i:11519599 original size:2 final size:2
Alignment explanation
Indices: 11519592--11519617 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
11519582 TAGAGTAGTA
11519592 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
11519618 TTATGAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11520270 original size:14 final size:14
Alignment explanation
Indices: 11520253--11520304 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
11520243 TTTCCTTTTT
11520253 AAATATATTTTATA
1 AAATATATTTTATA
*
11520267 AAATACATTTTATA
1 AAATATATTTTATA
*
11520281 AAA-AAATGTTT-TA
1 AAATATAT-TTTATA
*
11520294 AATTATATTTT
1 AAATATATTTT
11520305 TGATTTTATA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
13 10 0.31
14 22 0.69
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (14 bp):
AAATATATTTTATA
Found at i:11520559 original size:17 final size:19
Alignment explanation
Indices: 11520518--11520559 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
11520508 TTAATTTTAA
11520518 TTATTAAAAAAATCTACTT
1 TTATTAAAAAAATCTACTT
*
11520537 TCTATTAAAAATAT-TA-TT
1 T-TATTAAAAAAATCTACTT
11520555 TTATT
1 TTATT
11520560 GATAAATCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 4 0.19
18 3 0.14
19 3 0.14
20 11 0.52
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (19 bp):
TTATTAAAAAAATCTACTT
Found at i:11521414 original size:13 final size:14
Alignment explanation
Indices: 11521387--11521416 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
11521377 AAATAAAAAT
11521387 TATCATGCGAATAA
1 TATCATGCGAATAA
11521401 TATCATGC-AATAA
1 TATCATGCGAATAA
11521414 TAT
1 TAT
11521417 AATTTAGTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.33
Consensus pattern (14 bp):
TATCATGCGAATAA
Found at i:11521983 original size:28 final size:28
Alignment explanation
Indices: 11521943--11521998 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
11521933 AGGATGCCAT
11521943 TGTTTTTCACTTTCTAGCTATAGTGTGG
1 TGTTTTTCACTTTCTAGCTATAGTGTGG
11521971 TGTTTTTCACTTTCTAGCTATAGTGTGG
1 TGTTTTTCACTTTCTAGCTATAGTGTGG
11521999 AAGTCGTACC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.14, C:0.14, G:0.21, T:0.50
Consensus pattern (28 bp):
TGTTTTTCACTTTCTAGCTATAGTGTGG
Found at i:11522370 original size:2 final size:2
Alignment explanation
Indices: 11522363--11522394 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
11522353 TAGAGTAATA
*
11522363 AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11522395 TTTAAATTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11522939 original size:14 final size:14
Alignment explanation
Indices: 11522920--11522948 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
11522910 TTTCATTTTT
11522920 AAATATATTTTATA
1 AAATATATTTTATA
11522934 AAATATATTTTATA
1 AAATATATTTTATA
11522948 A
1 A
11522949 GAAAGAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AAATATATTTTATA
Found at i:11525617 original size:14 final size:14
Alignment explanation
Indices: 11525598--11525628 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
11525588 TTTCCTTTTT
11525598 AAATATATTTTATA
1 AAATATATTTTATA
*
11525612 AAATATGTTTTATA
1 AAATATATTTTATA
11525626 AAA
1 AAA
11525629 AAGAAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
AAATATATTTTATA
Found at i:11525903 original size:18 final size:19
Alignment explanation
Indices: 11525861--11525904 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
11525851 TTAAAAATTA
*
11525861 ATTTTA-ATTTTACAAAAT
1 ATTTTATATTATACAAAAT
11525879 ATATTTATATTATA-AAAAT
1 AT-TTTATATTATACAAAAT
11525898 ATTTTAT
1 ATTTTAT
11525905 GAAAATCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 7 0.30
19 11 0.48
20 5 0.22
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTTTATATTATACAAAAT
Found at i:11526083 original size:24 final size:26
Alignment explanation
Indices: 11526056--11526109 Score: 80
Period size: 24 Copynumber: 2.2 Consensus size: 26
11526046 GTAATATTTT
11526056 TAAAAATATAT-TTTATGGAT-AGAA
1 TAAAAATATATATTTATGGATAAGAA
11526080 T-AAAATATATATTTATGGATAAGAA
1 TAAAAATATATATTTATGGATAAGAA
11526105 -AAAAA
1 TAAAAA
11526110 GTATTTGTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
23 9 0.33
24 10 0.37
25 8 0.30
ACGTcount: A:0.56, C:0.00, G:0.11, T:0.33
Consensus pattern (26 bp):
TAAAAATATATATTTATGGATAAGAA
Found at i:11526087 original size:23 final size:25
Alignment explanation
Indices: 11526057--11526109 Score: 83
Period size: 23 Copynumber: 2.2 Consensus size: 25
11526047 TAATATTTTT
11526057 AAAAATATAT-TTTATGGAT-AGAA
1 AAAAATATATATTTATGGATAAGAA
*
11526080 TAAAATATATATTTATGGATAAGAA
1 AAAAATATATATTTATGGATAAGAA
11526105 AAAAA
1 AAAAA
11526110 GTATTTGTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 9 0.35
24 9 0.35
25 8 0.31
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.32
Consensus pattern (25 bp):
AAAAATATATATTTATGGATAAGAA
Found at i:11526198 original size:21 final size:20
Alignment explanation
Indices: 11526170--11526215 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
11526160 ATTTTTTTTG
* *
11526170 TTTTAAAAATGATTTTGAAT
1 TTTTAAAAAAGAATTTGAAT
*
11526190 TTTTAAAAAAGAATTTGAGT
1 TTTTAAAAAAGAATTTGAAT
11526210 TTTTAA
1 TTTTAA
11526216 CTTAATTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (20 bp):
TTTTAAAAAAGAATTTGAAT
Found at i:11526904 original size:17 final size:18
Alignment explanation
Indices: 11526882--11526916 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
11526872 TTACTTATGA
11526882 ATTTTTTT-ATTTATTAC
1 ATTTTTTTAATTTATTAC
11526899 ATTTTTTTAATTTATTAC
1 ATTTTTTTAATTTATTAC
11526917 CTTTACATCC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.69
Consensus pattern (18 bp):
ATTTTTTTAATTTATTAC
Found at i:11533943 original size:17 final size:18
Alignment explanation
Indices: 11533921--11533955 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
11533911 ATATCATCTA
11533921 TTATCTATC-ATTTATAT
1 TTATCTATCTATTTATAT
11533938 TTATCTATCTATTTATAT
1 TTATCTATCTATTTATAT
11533956 ATAAAAGTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.29, C:0.11, G:0.00, T:0.60
Consensus pattern (18 bp):
TTATCTATCTATTTATAT
Found at i:11534083 original size:16 final size:15
Alignment explanation
Indices: 11534056--11534098 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
11534046 ATTTTTATTC
11534056 ATTAAATTAAATTAA
1 ATTAAATTAAATTAA
11534071 ATTAAATTTAAATTTAA
1 ATTAAA-TTAAA-TTAA
* *
11534088 CTAAAATTAAA
1 ATTAAATTAAA
11534099 AATAAAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 6 0.25
16 10 0.42
17 8 0.33
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (15 bp):
ATTAAATTAAATTAA
Found at i:11534099 original size:6 final size:5
Alignment explanation
Indices: 11534056--11534098 Score: 50
Period size: 5 Copynumber: 8.2 Consensus size: 5
11534046 ATTTTTATTC
* *
11534056 ATTAA ATTAA ATTAA ATTAA ATTTAA ATTTAA CTAAA ATTAA A
1 ATTAA ATTAA ATTAA ATTAA A-TTAA A-TTAA ATTAA ATTAA A
11534099 AATAAAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
5 23 0.70
6 10 0.30
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (5 bp):
ATTAA
Found at i:11535307 original size:21 final size:21
Alignment explanation
Indices: 11535199--11535307 Score: 69
Period size: 21 Copynumber: 5.2 Consensus size: 21
11535189 TTATCAATAA
* * *
11535199 TTACTAAAAATATATTATAAG
1 TTACCAAAATTATATTAAAAG
** * *
11535220 TTATTAAAATTATATGAAATG
1 TTACCAAAATTATATTAAAAG
* * * *
11535241 CTACC-AAATTACATCAAAAAA
1 TTACCAAAATTATAT-TAAAAG
* *
11535262 TTATCAAAATTTTATT-AAAG
1 TTACCAAAATTATATTAAAAG
11535282 ATTACCAAAATTATATTAAAAG
1 -TTACCAAAATTATATTAAAAG
11535304 TTAC
1 TTAC
11535308 TAAACTAATA
Statistics
Matches: 64, Mismatches: 20, Indels: 8
0.70 0.22 0.09
Matches are distributed among these distances:
20 11 0.17
21 42 0.66
22 11 0.17
ACGTcount: A:0.50, C:0.09, G:0.05, T:0.36
Consensus pattern (21 bp):
TTACCAAAATTATATTAAAAG
Found at i:11538936 original size:17 final size:16
Alignment explanation
Indices: 11538910--11538957 Score: 55
Period size: 15 Copynumber: 3.0 Consensus size: 16
11538900 ATATATTAAA
11538910 TTATAT-TTTTAATTAT
1 TTATATATTTT-ATTAT
*
11538926 TTATTTATTTTA-TAT
1 TTATATATTTTATTAT
11538941 TTATATATATTTATTAT
1 TTATATAT-TTTATTAT
11538958 ATTAGTCAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 10 0.37
16 10 0.37
17 7 0.26
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TTATATATTTTATTAT
Found at i:11538951 original size:25 final size:26
Alignment explanation
Indices: 11538910--11538960 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
11538900 ATATATTAAA
*
11538910 TTATATTTTTAATTATTTATT-TATT
1 TTATATTTATAATTATTTATTATATT
11538935 TTATATTTAT-ATATATTTATTATATT
1 TTATATTTATAAT-TATTTATTATATT
11538961 AGTCAAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 2 0.09
25 17 0.74
26 4 0.17
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (26 bp):
TTATATTTATAATTATTTATTATATT
Found at i:11540660 original size:2 final size:2
Alignment explanation
Indices: 11540653--11540682 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
11540643 AGATATGTGA
*
11540653 AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11540683 CACTAGTAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:11542990 original size:51 final size:51
Alignment explanation
Indices: 11542879--11542990 Score: 161
Period size: 51 Copynumber: 2.2 Consensus size: 51
11542869 TTGGATTATT
**
11542879 TTATATGAGTCAAAGTCCAATTTAATTTAATTTAGTTAATTTAAAATTAGA
1 TTATATGAGTCAAAGTCCAATCCAATTTAATTTAGTTAATTTAAAATTAGA
* ** *
11542930 TTACATGAGTCAAAGTTTAATCCAATTTAATTTAGTTGATTTAAAATTAGA
1 TTATATGAGTCAAAGTCCAATCCAATTTAATTTAGTTAATTTAAAATTAGA
*
11542981 TTATGTGAGT
1 TTATATGAGT
11542991 TTAAAAGTCC
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.43
Consensus pattern (51 bp):
TTATATGAGTCAAAGTCCAATCCAATTTAATTTAGTTAATTTAAAATTAGA
Found at i:11544818 original size:19 final size:19
Alignment explanation
Indices: 11544796--11544835 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
11544786 AACAACAAGA
* *
11544796 GAATCAAAGAACATTGAGG
1 GAATCAAAAAACACTGAGG
11544815 GAATCAAAAAACACTGAGG
1 GAATCAAAAAACACTGAGG
11544834 GA
1 GA
11544836 CTATGTTCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.50, C:0.12, G:0.25, T:0.12
Consensus pattern (19 bp):
GAATCAAAAAACACTGAGG
Found at i:11545987 original size:65 final size:65
Alignment explanation
Indices: 11545906--11546034 Score: 242
Period size: 65 Copynumber: 2.0 Consensus size: 65
11545896 CCAAATCCTA
11545906 CAAAACCAAGCAACTTCCAT-AAAAACCTTGACGTTCAAATAGGTTAACTTGTTAGTGCCCTCAC
1 CAAAACCAAGCAACTT-CATAAAAAACCTTGACGTTCAAATAGGTTAACTTGTTAGTGCCCTCAC
11545970 T
65 T
11545971 CAAAACCAAGCAACTTCATAAAAAACCTTGACGTTCAAATAGGTTAACTTGTTAGTGCCCTCAC
1 CAAAACCAAGCAACTTCATAAAAAACCTTGACGTTCAAATAGGTTAACTTGTTAGTGCCCTCAC
11546035 AGTTGCCCCT
Statistics
Matches: 63, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
64 3 0.05
65 60 0.95
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (65 bp):
CAAAACCAAGCAACTTCATAAAAAACCTTGACGTTCAAATAGGTTAACTTGTTAGTGCCCTCACT
Found at i:11553602 original size:36 final size:36
Alignment explanation
Indices: 11553551--11553625 Score: 123
Period size: 36 Copynumber: 2.1 Consensus size: 36
11553541 TTTGACCCTT
* *
11553551 CCATGTTTAAGTCATCGGATCCAGATATCGAATTTC
1 CCATGTTTAACTCATCGGATCCAGATATCGAATTCC
*
11553587 CCATGTTTAACTCATCGGTTCCAGATATCGAATTCC
1 CCATGTTTAACTCATCGGATCCAGATATCGAATTCC
11553623 CCA
1 CCA
11553626 CGACATAAGC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.32
Consensus pattern (36 bp):
CCATGTTTAACTCATCGGATCCAGATATCGAATTCC
Found at i:11567798 original size:2 final size:2
Alignment explanation
Indices: 11567791--11567821 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
11567781 TACTGAGTAA
*
11567791 AT AT AT AT AT AT AT AT AT AT AA AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
11567822 AATTTATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:11567829 original size:8 final size:10
Alignment explanation
Indices: 11567788--11567830 Score: 59
Period size: 10 Copynumber: 4.1 Consensus size: 10
11567778 TTGTACTGAG
11567788 TAAATATATA
1 TAAATATATA
11567798 TATATATATATA
1 TA-A-ATATATA
11567810 TAAATATATA
1 TAAATATATA
*
11567820 TAAATTTATA
1 TAAATATATA
11567830 T
1 T
11567831 TTTAAAATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
10 19 0.63
11 2 0.07
12 9 0.30
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
TAAATATATA
Found at i:11567990 original size:23 final size:20
Alignment explanation
Indices: 11567964--11568004 Score: 55
Period size: 23 Copynumber: 1.9 Consensus size: 20
11567954 TCTATCTTAC
11567964 TTTTAATATATATTAAATTATAT
1 TTTTAAT-TA-ATT-AATTATAT
11567987 TTTTAATTAATTAATTAT
1 TTTTAATTAATTAATTAT
11568005 TTTATATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 3 0.17
22 2 0.11
23 7 0.39
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTTAATTAATTAATTATAT
Found at i:11568380 original size:103 final size:103
Alignment explanation
Indices: 11568185--11568485 Score: 478
Period size: 103 Copynumber: 2.9 Consensus size: 103
11568175 ACACATTTAT
* * * * * *
11568185 AGAGAAAATTAGTCAATGAAAATTTTCTTCCTTTTTCTAATTCATG-TTTTTTTTTTCTACACAA
1 AGAGAAATTTGGTCAATGACAATTTTCTTCCCTTTTCTAATTCGTGTTTTTTTTTTTCTACACAT
11568249 AAGATGTGAACATGAGACTCTTAAATGTATAATTTCTA
66 AAGATGTGAACATGAGACTCTTAAATGTATAATTTCTA
*
11568287 AGAGAAATTTGGTCAATGACAATTTTCTTCCCTTTTCTAATTCGTGTTTTTTTTTTTCCACACAT
1 AGAGAAATTTGGTCAATGACAATTTTCTTCCCTTTTCTAATTCGTGTTTTTTTTTTTCTACACAT
**
11568352 AAGATGTGAATGTGAGACTCTTAAATGTATAATTTCTA
66 AAGATGTGAACATGAGACTCTTAAATGTATAATTTCTA
11568390 AGAGAAATTTGGTCAATGACAATTTTCTTCCCTTTTCTAATTCGTGTTTTTTTTTTTTCTACACA
1 AGAGAAATTTGGTCAATGACAATTTTCTTCCCTTTTCTAATTCGTG-TTTTTTTTTTTCTACACA
* * *
11568455 TAAGATATGAACATAAGACTATTAAATGTAT
65 TAAGATGTGAACATGAGACTCTTAAATGTAT
11568486 GTTATAAAAT
Statistics
Matches: 182, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
102 41 0.23
103 98 0.54
104 43 0.24
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.43
Consensus pattern (103 bp):
AGAGAAATTTGGTCAATGACAATTTTCTTCCCTTTTCTAATTCGTGTTTTTTTTTTTCTACACAT
AAGATGTGAACATGAGACTCTTAAATGTATAATTTCTA
Found at i:11570995 original size:36 final size:36
Alignment explanation
Indices: 11570948--11571020 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
11570938 ACGATAGGGA
*
11570948 TATGGATATTAAAATTCTATTATTTTTTAATTTGAT
1 TATGGATATTAAAATTCTATTATTTTTTAATTAGAT
*
11570984 TATGGATATTAAAATTTTATTATTTTTTAATTAGAT
1 TATGGATATTAAAATTCTATTATTTTTTAATTAGAT
11571020 T
1 T
11571021 TATCAATTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.34, C:0.01, G:0.08, T:0.56
Consensus pattern (36 bp):
TATGGATATTAAAATTCTATTATTTTTTAATTAGAT
Found at i:11571005 original size:20 final size:20
Alignment explanation
Indices: 11570948--11571006 Score: 54
Period size: 20 Copynumber: 3.1 Consensus size: 20
11570938 ACGATAGGGA
*
11570948 TATGGATATTAAAATTCTAT
1 TATGGATATTAAAATTTTAT
** *
11570968 TAT---T-TTTTAATTTGAT
1 TATGGATATTAAAATTTTAT
11570984 TATGGATATTAAAATTTTAT
1 TATGGATATTAAAATTTTAT
11571004 TAT
1 TAT
11571007 TTTTTAATTA
Statistics
Matches: 28, Mismatches: 7, Indels: 8
0.65 0.16 0.19
Matches are distributed among these distances:
16 11 0.39
17 1 0.04
19 1 0.04
20 15 0.54
ACGTcount: A:0.36, C:0.02, G:0.08, T:0.54
Consensus pattern (20 bp):
TATGGATATTAAAATTTTAT
Found at i:11571032 original size:36 final size:36
Alignment explanation
Indices: 11570953--11571034 Score: 112
Period size: 36 Copynumber: 2.3 Consensus size: 36
11570943 AGGGATATGG
* **
11570953 ATATTAAAATTCTATTATTTTTTAATTTGATTATGG
1 ATATTAAAATTCTATTATTTTTTAATTAGATTATCA
*
11570989 ATATTAAAATTTTATTATTTTTTAATTAGATTTATCA
1 ATATTAAAATTCTATTATTTTTTAATTAGA-TTATCA
11571026 AT-TTAAAAT
1 ATATTAAAAT
11571035 ATGATATGAT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
36 35 0.85
37 6 0.15
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.55
Consensus pattern (36 bp):
ATATTAAAATTCTATTATTTTTTAATTAGATTATCA
Found at i:11582192 original size:32 final size:33
Alignment explanation
Indices: 11582151--11582216 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
11582141 TTTAATGTTG
11582151 AATATTGAAAA-AACTTTTAAGATTCTCCATCA
1 AATATTGAAAATAACTTTTAAGATTCTCCATCA
11582183 AATATTGAAAATAACTTTTAAGATTCTCCATCA
1 AATATTGAAAATAACTTTTAAGATTCTCCATCA
11582216 A
1 A
11582217 TCTGATAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 11 0.33
33 22 0.67
ACGTcount: A:0.44, C:0.15, G:0.06, T:0.35
Consensus pattern (33 bp):
AATATTGAAAATAACTTTTAAGATTCTCCATCA
Found at i:11582424 original size:51 final size:53
Alignment explanation
Indices: 11582361--11582498 Score: 146
Period size: 50 Copynumber: 2.7 Consensus size: 53
11582351 CTAATTATTC
* *
11582361 CACCATTAGGGCCTA-ATTAGAAATATCTTCTCTTTTAAAGTTT-TAAA-TTTT
1 CACCATTTGGGCCTATTTTAGAAATATCTTCTCTTTTAAA-TTTCTAAATTTTT
* * *
11582412 CACCATTTGGGCCTATTTTAAAAAT-TCTTC-ATTTT-GATTTCTAAATTTTT
1 CACCATTTGGGCCTATTTTAGAAATATCTTCTCTTTTAAATTTCTAAATTTTT
* * *
11582462 CACCATTTGGGTCTATTTTAGAAA-ATTTTTTCTTTTA
1 CACCATTTGGGCCTATTTTAGAAATATCTTCTCTTTTA
11582499 TCTTTGGAAA
Statistics
Matches: 71, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
48 3 0.04
49 5 0.07
50 33 0.46
51 23 0.32
52 7 0.10
ACGTcount: A:0.28, C:0.15, G:0.09, T:0.48
Consensus pattern (53 bp):
CACCATTTGGGCCTATTTTAGAAATATCTTCTCTTTTAAATTTCTAAATTTTT
Found at i:11583802 original size:2 final size:2
Alignment explanation
Indices: 11583795--11583828 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
11583785 GGTGTCTACA
11583795 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11583829 TGACAAAGCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11585657 original size:53 final size:53
Alignment explanation
Indices: 11585577--11585680 Score: 172
Period size: 53 Copynumber: 2.0 Consensus size: 53
11585567 GTGACAGATT
*
11585577 TGGAAAGGGTAATGGAAAGAAATCATGGTTCTAATACCATGTTAAGTATCTAA
1 TGGAAAGGGTAATGGAAAGAAATCATGGCTCTAATACCATGTTAAGTATCTAA
* * *
11585630 TGGAAAGGGTAATGGTAAGAAATCATGGCTCTGATATCATGTTAAGTATCT
1 TGGAAAGGGTAATGGAAAGAAATCATGGCTCTAATACCATGTTAAGTATCT
11585681 GATTTAAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.30
Consensus pattern (53 bp):
TGGAAAGGGTAATGGAAAGAAATCATGGCTCTAATACCATGTTAAGTATCTAA
Found at i:11585795 original size:70 final size:70
Alignment explanation
Indices: 11585712--11585847 Score: 227
Period size: 70 Copynumber: 1.9 Consensus size: 70
11585702 AAGTGAAGGA
* *
11585712 GCTCAACTTCAATATAAGACTATAAGATATTGGATATTTATTAGATTTGAGATAACACTACACTA
1 GCTCAACTTCAATATAAGACTATAAGATATTAGATATTTATTAGATGTGAGATAACACTACACTA
11585777 ACAGG
66 ACAGG
* * *
11585782 GCTCAACTTCAATATAAGATTATAAGATATTAGATATTTATTAGATGTGTGATAACACTATACTA
1 GCTCAACTTCAATATAAGACTATAAGATATTAGATATTTATTAGATGTGAGATAACACTACACTA
11585847 A
66 A
11585848 TAGATCACGT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
70 61 1.00
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.34
Consensus pattern (70 bp):
GCTCAACTTCAATATAAGACTATAAGATATTAGATATTTATTAGATGTGAGATAACACTACACTA
ACAGG
Found at i:11591457 original size:24 final size:23
Alignment explanation
Indices: 11591430--11591479 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
11591420 AAAATTCTTA
*
11591430 AAATTCTA-ATTTTTAAGAATGAAT
1 AAATTCTAGATTATTAA-AAT-AAT
*
11591454 AAATTGTAGATTATTAAAATAAT
1 AAATTCTAGATTATTAAAATAAT
11591477 AAA
1 AAA
11591480 AATAGATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 6 0.26
24 10 0.43
25 7 0.30
ACGTcount: A:0.52, C:0.02, G:0.08, T:0.38
Consensus pattern (23 bp):
AAATTCTAGATTATTAAAATAAT
Found at i:11591848 original size:21 final size:20
Alignment explanation
Indices: 11591823--11591867 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
11591813 TATTTATATT
11591823 TTATTAAATTTTAAATA-ATAA
1 TTATTAAA-TTTAAATACA-AA
*
11591844 TTATTATATTTAAATACAAA
1 TTATTAAATTTAAATACAAA
11591864 TTAT
1 TTAT
11591868 GAATCATGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (20 bp):
TTATTAAATTTAAATACAAA
Found at i:11596288 original size:8 final size:8
Alignment explanation
Indices: 11596275--11596300 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
11596265 ATTACAACAA
11596275 AAAAATAT
1 AAAAATAT
11596283 AAAAATAT
1 AAAAATAT
11596291 AAAAATAT
1 AAAAATAT
11596299 AA
1 AA
11596301 TTTTAAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AAAAATAT
Found at i:11605485 original size:14 final size:15
Alignment explanation
Indices: 11605466--11605497 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
11605456 TTTTCCTTTT
11605466 AAATATATTTTAT-A
1 AAATATATTTTATCA
11605480 AAATATATTTTATCA
1 AAATATATTTTATCA
11605495 AAA
1 AAA
11605498 AAATAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (15 bp):
AAATATATTTTATCA
Found at i:11605857 original size:17 final size:17
Alignment explanation
Indices: 11605814--11605858 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
11605804 AAAAATAATT
* *
11605814 TAAATTATAATATTTTA
1 TAAAATATATTATTTTA
11605831 TAAAATATATTATTTTA
1 TAAAATATATTATTTTA
11605848 TAAAATATATT
1 TAAAATATATT
11605859 TGAAATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TAAAATATATTATTTTA
Found at i:11606076 original size:20 final size:20
Alignment explanation
Indices: 11606053--11606095 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
11606043 ATTTTTTTTG
* *
11606053 TTTTT-AAAATGATTTTGAA
1 TTTTTAAAAAAGAATTTGAA
11606072 TTTTTAAAAAAGAATTTGAA
1 TTTTTAAAAAAGAATTTGAA
11606092 TTTT
1 TTTT
11606096 AACTTAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (20 bp):
TTTTTAAAAAAGAATTTGAA
Found at i:11608990 original size:12 final size:11
Alignment explanation
Indices: 11608976--11609036 Score: 54
Period size: 10 Copynumber: 5.5 Consensus size: 11
11608966 ATTATTTAAA
11608976 TAATATTAATT
1 TAATATTAATT
11608987 ATAATATTTAATT
1 -TAATA-TTAATT
*
11609000 TGATAATTAA-T
1 TAAT-ATTAATT
*
11609011 TAATATTACTT
1 TAATATTAATT
11609022 TAATA-TAATT
1 TAATATTAATT
*
11609032 AAATA
1 TAATA
11609037 ATATTCAAGT
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
10 12 0.29
11 10 0.24
12 12 0.29
13 7 0.17
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.49
Consensus pattern (11 bp):
TAATATTAATT
Found at i:11609145 original size:19 final size:21
Alignment explanation
Indices: 11609123--11609168 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
11609113 TATTAAATTA
*
11609123 AATATTTAAA-ATTA-AAAAT
1 AATATTAAAATATTAGAAAAT
11609142 AATATTAAAATATTATGAAAAT
1 AATATTAAAATATTA-GAAAAT
11609164 AATAT
1 AATAT
11609169 AATAGTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 9 0.39
20 4 0.17
22 10 0.43
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (21 bp):
AATATTAAAATATTAGAAAAT
Found at i:11609356 original size:24 final size:26
Alignment explanation
Indices: 11609309--11609365 Score: 75
Period size: 24 Copynumber: 2.3 Consensus size: 26
11609299 TTAATATGAA
*
11609309 AATAATATTTTGATAATATAATATATT
1 AATAATATTCTGATAATATAATAT-TT
11609336 AA-AATATTCTGA-AAT-TAATATTT
1 AATAATATTCTGATAATATAATATTT
11609359 AATAATA
1 AATAATA
11609366 AAAAATTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 4 0.14
24 10 0.36
25 3 0.11
26 9 0.32
27 2 0.07
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.44
Consensus pattern (26 bp):
AATAATATTCTGATAATATAATATTT
Found at i:11609385 original size:58 final size:58
Alignment explanation
Indices: 11609274--11609387 Score: 133
Period size: 58 Copynumber: 2.0 Consensus size: 58
11609264 AATTATTCAC
* *** *
11609274 TATTAAAATACACTTAAATTAATATTTAATATGAAAATAATATTTTGATAATATAATA
1 TATTAAAATACACTGAAATTAATATTTAATATGAAAATAATATTAACAAAATATAATA
**
11609332 TATTAAAATATTCTGAAATTAATATTTAATAAT-AAAA-AATTATTAACAAAATATAA
1 TATTAAAATACACTGAAATTAATATTTAAT-ATGAAAATAA-TATTAACAAAATATAA
11609388 AAATATGAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
57 2 0.04
58 43 0.91
59 2 0.04
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.39
Consensus pattern (58 bp):
TATTAAAATACACTGAAATTAATATTTAATATGAAAATAATATTAACAAAATATAATA
Found at i:11609470 original size:10 final size:10
Alignment explanation
Indices: 11609424--11609485 Score: 56
Period size: 10 Copynumber: 6.2 Consensus size: 10
11609414 AGTTATTATG
11609424 ATTAAATAAT
1 ATTAAATAAT
*
11609434 A--AAGTAAT
1 ATTAAATAAT
11609442 ATTAAATTAAT
1 ATTAAA-TAAT
* *
11609453 ATTTAATAGT
1 ATTAAATAAT
*
11609463 ATTAAATATT
1 ATTAAATAAT
11609473 ATTAAAATAAT
1 ATT-AAATAAT
11609484 AT
1 AT
11609486 ATTATATTAG
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
8 7 0.17
10 17 0.41
11 17 0.41
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (10 bp):
ATTAAATAAT
Found at i:11609635 original size:18 final size:18
Alignment explanation
Indices: 11609612--11609675 Score: 58
Period size: 18 Copynumber: 3.4 Consensus size: 18
11609602 ACACATAATA
11609612 ATTAAATATAAAAATATT
1 ATTAAATATAAAAATATT
*
11609630 ATTAAAT-TAAAATTTTGTATT
1 ATTAAATATAAAA----ATATT
* *
11609651 AGTAAATATTAAAATATT
1 ATTAAATATAAAAATATT
11609669 ATTAAAT
1 ATTAAAT
11609676 GAATATTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
17 5 0.14
18 17 0.47
21 10 0.28
22 4 0.11
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (18 bp):
ATTAAATATAAAAATATT
Found at i:11609690 original size:39 final size:39
Alignment explanation
Indices: 11609614--11609690 Score: 109
Period size: 39 Copynumber: 2.0 Consensus size: 39
11609604 ACATAATAAT
* **
11609614 TAAATATAAAAATATTATTAAATTAAAATTTTGTATTAG
1 TAAATATAAAAATATTATTAAATGAAAATTTAATATTAG
* *
11609653 TAAATATTAAAATATTATTAAATGAATATTTAATATTA
1 TAAATATAAAAATATTATTAAATGAAAATTTAATATTA
11609691 ACATAATACG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (39 bp):
TAAATATAAAAATATTATTAAATGAAAATTTAATATTAG
Found at i:11609766 original size:99 final size:99
Alignment explanation
Indices: 11609554--11609789 Score: 253
Period size: 99 Copynumber: 2.4 Consensus size: 99
11609544 AACATAAGTG
* * *
11609554 AATATATTAAATTATTATTAAACTAATATTAAATATTAACATAATATTACACATAATAATTAAAT
1 AATATATTAAA-TATTATTAAA-TAATATTTAATATTAACATAATATCACAAATAATAATTAAAT
* *
11609619 ATAAAAATATTATTAAATTAAAATTTTGTATTAGTA
64 ATAAAAATATTATTAAATTAAAATTTTATAGTAGTA
* *
11609655 AATAT-TAAAATATTATTAAATGAATATTTAATATTAACATAATA-CGCAAATAAT-ATTAAATA
1 AATATATTAAATATTATTAAAT-AATATTTAATATTAACATAATATCACAAATAATAATTAAATA
**** * * * *
11609717 TTGTTATCTTGTTATATTAAAATTTTATAGTATTA
65 TAAAAATATTATTAAATTAAAATTTTATAGTAGTA
* *
11609752 AATAATATTTAATATTATTAAATTAACATTTAATATTA
1 AAT-ATATTAAATATTATTAAA-TAATATTTAATATTA
11609790 TGGAATTAAT
Statistics
Matches: 113, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
97 36 0.32
98 10 0.09
99 57 0.50
100 5 0.04
101 5 0.04
ACGTcount: A:0.50, C:0.04, G:0.03, T:0.44
Consensus pattern (99 bp):
AATATATTAAATATTATTAAATAATATTTAATATTAACATAATATCACAAATAATAATTAAATAT
AAAAATATTATTAAATTAAAATTTTATAGTAGTA
Found at i:11609784 original size:21 final size:21
Alignment explanation
Indices: 11609732--11609790 Score: 75
Period size: 20 Copynumber: 2.9 Consensus size: 21
11609722 ATCTTGTTAT
* *
11609732 ATTAAAATTTTATAGTATTAA
1 ATTAAAATTTAATATTATTAA
*
11609753 A-TAATATTTAATATTATTAA
1 ATTAAAATTTAATATTATTAA
*
11609773 ATTAACATTTAATATTAT
1 ATTAAAATTTAATATTAT
11609791 GGAATTAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 17 0.52
21 16 0.48
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (21 bp):
ATTAAAATTTAATATTATTAA
Found at i:11609796 original size:21 final size:21
Alignment explanation
Indices: 11609732--11609798 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
11609722 ATCTTGTTAT
* * * *
11609732 ATTAAAATTTTATAGTATTAA
1 ATTAACATTTAATATTATGAA
* *
11609753 A-TAATATTTAATATTATTAA
1 ATTAACATTTAATATTATGAA
*
11609773 ATTAACATTTAATATTATGGA
1 ATTAACATTTAATATTATGAA
11609794 ATTAA
1 ATTAA
11609799 TATTATTTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
20 17 0.44
21 22 0.56
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.46
Consensus pattern (21 bp):
ATTAACATTTAATATTATGAA
Found at i:11609819 original size:14 final size:16
Alignment explanation
Indices: 11609757--11609841 Score: 53
Period size: 14 Copynumber: 5.8 Consensus size: 16
11609747 TATTAAATAA
11609757 TATTTAATATTATTAA
1 TATTTAATATTATTAA
*
11609773 -A-TTAACA-T-TTAA
1 TATTTAATATTATTAA
* * *
11609785 TATTATGGA-ATTAATAT
1 TATT-T-AATATTATTAA
11609802 TATTTAA-ATT-TTAA
1 TATTTAATATTATTAA
11609816 TATTTAATATTATT-A
1 TATTTAATATTATTAA
11609831 -ATTTAATATTA
1 TATTTAATATTA
11609842 ATTTTTATAT
Statistics
Matches: 54, Mismatches: 7, Indels: 18
0.68 0.09 0.23
Matches are distributed among these distances:
12 4 0.07
13 2 0.04
14 26 0.48
15 11 0.20
16 5 0.09
17 6 0.11
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.53
Consensus pattern (16 bp):
TATTTAATATTATTAA
Found at i:11609821 original size:38 final size:35
Alignment explanation
Indices: 11609758--11609841 Score: 107
Period size: 38 Copynumber: 2.3 Consensus size: 35
11609748 ATTAAATAAT
11609758 ATTTAATATTATTAAATTAACATTTAATATTATGGA
1 ATTTAATATTATTAAATTAACATTTAATATTAT-GA
* *
11609794 A-TTAATATTATTTAAATTTTAATATTTAATATTATTA
1 ATTTAATATTA-TTAAA--TTAACATTTAATATTATGA
11609831 ATTTAATATTA
1 ATTTAATATTA
11609842 ATTTTTATAT
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
35 9 0.21
36 6 0.14
37 2 0.05
38 25 0.60
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.52
Consensus pattern (35 bp):
ATTTAATATTATTAAATTAACATTTAATATTATGA
Found at i:11609835 original size:21 final size:24
Alignment explanation
Indices: 11609795--11609840 Score: 71
Period size: 21 Copynumber: 2.0 Consensus size: 24
11609785 TATTATGGAA
11609795 TTAATATTATTTAAATTTTAATAT
1 TTAATATTATTTAAATTTTAATAT
11609819 TTAATATTA-TT-AA-TTTAATAT
1 TTAATATTATTTAAATTTTAATAT
11609840 T
1 T
11609841 AATTTTTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 9 0.41
22 2 0.09
23 2 0.09
24 9 0.41
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (24 bp):
TTAATATTATTTAAATTTTAATAT
Found at i:11609861 original size:34 final size:31
Alignment explanation
Indices: 11609808--11609881 Score: 85
Period size: 33 Copynumber: 2.3 Consensus size: 31
11609798 ATATTATTTA
* * *
11609808 AATTTTAATATTTAATATTATTAATTTAATATT
1 AATTTTTATATTCAATATTATGAATTT--TATT
11609841 AATTTTTATATTCAATTATTATGAATTTTATT
1 AATTTTTATATTCAA-TATTATGAATTTTATT
*
11609873 CATTTTTAT
1 AATTTTTAT
11609882 TAATATTAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
32 12 0.33
33 13 0.36
34 11 0.31
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.59
Consensus pattern (31 bp):
AATTTTTATATTCAATATTATGAATTTTATT
Found at i:11619299 original size:24 final size:23
Alignment explanation
Indices: 11619272--11619321 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
11619262 AAAAATTTTA
*
11619272 AAATTCTA-ATTTTTAAGAATGAAT
1 AAATTCTAGATTATTAA-AAT-AAT
*
11619296 AAATTGTAGATTATTAAAATAAT
1 AAATTCTAGATTATTAAAATAAT
11619319 AAA
1 AAA
11619322 AATAGATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 6 0.26
24 10 0.43
25 7 0.30
ACGTcount: A:0.52, C:0.02, G:0.08, T:0.38
Consensus pattern (23 bp):
AAATTCTAGATTATTAAAATAAT
Found at i:11619838 original size:36 final size:36
Alignment explanation
Indices: 11619786--11619856 Score: 110
Period size: 37 Copynumber: 2.0 Consensus size: 36
11619776 TACCACTAAC
11619786 AAATCACTCTATACTA-TTAGTTATTCTAAAATAAT
1 AAATCACTCTATACTATTTAGTTATTCTAAAATAAT
11619821 AAAT-ACTCTCATAACTATTTAGTTATTCTAAAATAA
1 AAATCACTCT-AT-ACTATTTAGTTATTCTAAAATAA
11619857 AATATTCTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
34 5 0.15
35 6 0.18
36 4 0.12
37 18 0.55
ACGTcount: A:0.44, C:0.14, G:0.03, T:0.39
Consensus pattern (36 bp):
AAATCACTCTATACTATTTAGTTATTCTAAAATAAT
Found at i:11623960 original size:8 final size:8
Alignment explanation
Indices: 11623947--11623972 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
11623937 TATTACAACA
11623947 AAAAATAT
1 AAAAATAT
11623955 AAAAATAT
1 AAAAATAT
11623963 AAAAATAT
1 AAAAATAT
11623971 AA
1 AA
11623973 TTTTAAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AAAAATAT
Found at i:11625550 original size:119 final size:119
Alignment explanation
Indices: 11625339--11625582 Score: 470
Period size: 119 Copynumber: 2.1 Consensus size: 119
11625329 CACACCAGAC
11625339 TATTGTGTAGCACTTAGTGATTCCCACGGCTCCACCGTGTAGCACTTAGTGACTTCCACGACTGC
1 TATTGTGTAGCACTTAGTGATTCCCACGGCTCCACCGTGTAGCACTTAGTGACTTCCACGACTGC
*
11625404 GGACTGGTGACCGCTCTGATACTATTTGTAAAGACTCGCACCCAACCTGCGAGG
66 GGACTGGTGACCGCTCTGATACCATTTGTAAAGACTCGCACCCAACCTGCGAGG
11625458 TATTGTGTAGCACTTAGTGATTCCCACGGCTCCACCGTGTAGCACTTAGTGACTTCCACGACTGC
1 TATTGTGTAGCACTTAGTGATTCCCACGGCTCCACCGTGTAGCACTTAGTGACTTCCACGACTGC
*
11625523 GGACTGGTGACTGCTCTGATACCATTTGTAAAGACTCGCACCCAACCTGCGAGG
66 GGACTGGTGACCGCTCTGATACCATTTGTAAAGACTCGCACCCAACCTGCGAGG
11625577 TATTGT
1 TATTGT
11625583 CCGCTTTGAC
Statistics
Matches: 123, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
119 123 1.00
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (119 bp):
TATTGTGTAGCACTTAGTGATTCCCACGGCTCCACCGTGTAGCACTTAGTGACTTCCACGACTGC
GGACTGGTGACCGCTCTGATACCATTTGTAAAGACTCGCACCCAACCTGCGAGG
Found at i:11627226 original size:22 final size:22
Alignment explanation
Indices: 11627201--11627242 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
11627191 ACCTAAATGG
11627201 AGAAAATTTTAGAAATAGATAA
1 AGAAAATTTTAGAAATAGATAA
**
11627223 AGAAAATTTTCTAAATAGAT
1 AGAAAATTTTAGAAATAGAT
11627243 CCATATGGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.55, C:0.02, G:0.12, T:0.31
Consensus pattern (22 bp):
AGAAAATTTTAGAAATAGATAA
Found at i:11627227 original size:50 final size:50
Alignment explanation
Indices: 11627173--11627267 Score: 138
Period size: 50 Copynumber: 1.9 Consensus size: 50
11627163 GAAACTAATG
*
11627173 AGAAAATTTTCTAAATA-AACCTAAATGGAGAAAATTTTAGAAATAGATAA
1 AGAAAATTTTCTAAATAGAACC-AAATGGAGAAAAATTTAGAAATAGATAA
* * *
11627223 AGAAAATTTTCTAAATAGATCCATATGGTGAAAAATTTAGAAATA
1 AGAAAATTTTCTAAATAGAACCAAATGGAGAAAAATTTAGAAATA
11627268 AAACTTGTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
50 37 0.93
51 3 0.08
ACGTcount: A:0.52, C:0.06, G:0.13, T:0.29
Consensus pattern (50 bp):
AGAAAATTTTCTAAATAGAACCAAATGGAGAAAAATTTAGAAATAGATAA
Found at i:11633855 original size:27 final size:27
Alignment explanation
Indices: 11633825--11633914 Score: 67
Period size: 27 Copynumber: 3.2 Consensus size: 27
11633815 TTTTTTTTAG
11633825 GAAAAGTTGAAAGTATCAATTTTCCTT
1 GAAAAGTTGAAAGTATCAATTTTCCTT
* ** **
11633852 GAAAATAAGTTTTCTAAAAAAT--ATTTTCGAT
1 G--AA-AAG--TT-GAAAGTATCAATTTTCCTT
11633883 GAAAAGTTGAAAGTATCAATTTTCCTT
1 GAAAAGTTGAAAGTATCAATTTTCCTT
11633910 GAAAA
1 GAAAA
11633915 TAATTTTCTA
Statistics
Matches: 45, Mismatches: 10, Indels: 16
0.63 0.14 0.23
Matches are distributed among these distances:
25 5 0.11
26 2 0.04
27 13 0.29
28 3 0.07
29 4 0.09
30 3 0.07
31 8 0.18
32 2 0.04
33 5 0.11
ACGTcount: A:0.42, C:0.09, G:0.13, T:0.36
Consensus pattern (27 bp):
GAAAAGTTGAAAGTATCAATTTTCCTT
Found at i:11633936 original size:115 final size:114
Alignment explanation
Indices: 11633817--11634028 Score: 309
Period size: 115 Copynumber: 1.9 Consensus size: 114
11633807 TTATCAATTT
* * * *
11633817 TTTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAGTTTTCTAAAAAATATTTTCG
1 TTTTTGAGGAAAAGGTAAAAGTATCAATTTTCCTTGAAAATAAAATTTT-TAAAAAATATTTTCG
* * *
11633881 ATGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAATTTTCTAAAAAATA
65 A-AAAAAGTTGAAAGTACCAATTTTCCTTAAAAATAATTTTCTAAAAAATA
* *
11633932 TTTTTGAGGAAAAGGTAAAAGTATCAATTTTCCTTGAAAATAAAATTTTTTAAAAATATTTTGGA
1 TTTTTGAGGAAAAGGTAAAAGTATCAATTTTCCTTGAAAATAAAATTTTTAAAAAATATTTTCGA
*
11633997 AAAAAGTTGAAAGTACCAATTTTTCTTAAAAA
66 AAAAAGTTGAAAGTACCAATTTTCCTTAAAAA
11634029 AAAATATTTT
Statistics
Matches: 86, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
114 28 0.33
115 52 0.60
116 6 0.07
ACGTcount: A:0.43, C:0.07, G:0.12, T:0.38
Consensus pattern (114 bp):
TTTTTGAGGAAAAGGTAAAAGTATCAATTTTCCTTGAAAATAAAATTTTTAAAAAATATTTTCGA
AAAAAGTTGAAAGTACCAATTTTCCTTAAAAATAATTTTCTAAAAAATA
Found at i:11633953 original size:57 final size:57
Alignment explanation
Indices: 11633817--11634028 Score: 284
Period size: 57 Copynumber: 3.7 Consensus size: 57
11633807 TTATCAATTT
*
11633817 TTTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTCTAAAAAATA
1 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAA-TTTTCTAAAAAATA
* *
11633875 TTTTCGATGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAATTTTCTAAAAAATA
1 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAATTTTCTAAAAAATA
* * *
11633932 TTTTTGAGGAAAAGGTAAAAGTATCAATTTTCCTTGAAAATAAAATTTT-TTAAAAATA
1 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT--AATTTTCTAAAAAATA
* * * * *
11633990 TTTTGGA-AAAAAGTTGAAAGTACCAATTTTTCTTAAAAA
1 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAA
11634029 AAAATATTTT
Statistics
Matches: 137, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
57 77 0.56
58 54 0.39
59 6 0.04
ACGTcount: A:0.43, C:0.07, G:0.12, T:0.38
Consensus pattern (57 bp):
TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAATTTTCTAAAAAATA
Found at i:11635353 original size:17 final size:16
Alignment explanation
Indices: 11635317--11635368 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 16
11635307 TCTTCAATCC
11635317 TTTA-ATATAT-ATTA
1 TTTATATATATAATTA
11635331 TATTATATATTATAATTA
1 T-TTATATA-TATAATTA
11635349 TTTATATATATAATTTA
1 TTTATATATATAA-TTA
11635366 TTT
1 TTT
11635369 TAATTAGTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
14 1 0.03
15 3 0.09
16 8 0.24
17 16 0.48
18 5 0.15
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
TTTATATATATAATTA
Found at i:11635367 original size:26 final size:27
Alignment explanation
Indices: 11635324--11635374 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
11635314 TCCTTTAATA
*
11635324 TATATTATATTATATATTATAATTATT
1 TATATTATATAATATATTATAATTATT
* *
11635351 TATA-TATATAATTTATTTTAATTA
1 TATATTATATAATATATTATAATTA
11635375 GTTCTCAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (27 bp):
TATATTATATAATATATTATAATTATT
Found at i:11636236 original size:150 final size:150
Alignment explanation
Indices: 11635965--11636241 Score: 509
Period size: 150 Copynumber: 1.8 Consensus size: 150
11635955 ATCTATATTA
*
11635965 GAATGTTGTAGATATAAATTGAATTTAATATAATAGATATATATCTAATAATATCATATTAAAAA
1 GAATGTGGTAGATATAAATTGAATTTAATATAATAGATATATATCTAATAATATCATATTAAAAA
*
11636030 GGTAGGTATACATCGACTTCAATATGGTACATATCTTTTAATGAATACAGTACATTATACCAATA
66 GGTAGGTATACATCGACTTCAATATGGTACATATCTTTTAATGAATACAGTACATTACACCAATA
11636095 GATTAGTTGAAATTTTTAAT
131 GATTAGTTGAAATTTTTAAT
* *
11636115 GAATGTGGTAGATATAAATTGAATTTAATATGATAGATATATATCTAATAATATCATATTAATAA
1 GAATGTGGTAGATATAAATTGAATTTAATATAATAGATATATATCTAATAATATCATATTAAAAA
*
11636180 GGTAGGTATACATCGACTTCAATATGGTACATATCTTTTAATGAATATAGTACATTACACCA
66 GGTAGGTATACATCGACTTCAATATGGTACATATCTTTTAATGAATACAGTACATTACACCA
11636242 TGATCTGACA
Statistics
Matches: 122, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
150 122 1.00
ACGTcount: A:0.42, C:0.09, G:0.13, T:0.37
Consensus pattern (150 bp):
GAATGTGGTAGATATAAATTGAATTTAATATAATAGATATATATCTAATAATATCATATTAAAAA
GGTAGGTATACATCGACTTCAATATGGTACATATCTTTTAATGAATACAGTACATTACACCAATA
GATTAGTTGAAATTTTTAAT
Found at i:11636295 original size:150 final size:147
Alignment explanation
Indices: 11635991--11636284 Score: 390
Period size: 150 Copynumber: 1.9 Consensus size: 147
11635981 AATTGAATTT
11635991 AATATAATAGATATATATCTAATAATATCATATTAAAAAGGTAGGTATACATCGACTTCAATATG
1 AATATAATAGATATATATCTAATAATATCATATTAAAAAGGTAGGTATACATCGACTTCAATATG
* * * *
11636056 GTACATATCTTTTAATGAATACAGTACATTATACCAATAGATTAGTTGAAATTTTTAATGAATGT
66 GTACATATCTTTTAATGAATACAGTACATTACACCAATACATTAATTGAAATTTTTAATGAATAT
** * * *
11636121 GGTAGATATAAATTGAATTT
131 CATACATAT-AA-TCAA-TC
* *
11636141 AATATGATAGATATATATCTAATAATATCATATTAATAAGGTAGGTATACATCGACTTCAATATG
1 AATATAATAGATATATATCTAATAATATCATATTAAAAAGGTAGGTATACATCGACTTCAATATG
*
11636206 GTACATATCTTTTAATGAATATAGTACATTACACCATGATCTGACATAGTAATTGAAATTTTTAA
66 GTACATATCTTTTAATGAATACAGTACATTACACCA--A--T-ACAT--TAATTGAAATTTTTAA
11636271 TGAATATCATACAT
124 TGAATATCATACAT
11636285 TACAACAATA
Statistics
Matches: 127, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
150 97 0.76
152 1 0.01
154 1 0.01
155 3 0.02
157 25 0.20
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (147 bp):
AATATAATAGATATATATCTAATAATATCATATTAAAAAGGTAGGTATACATCGACTTCAATATG
GTACATATCTTTTAATGAATACAGTACATTACACCAATACATTAATTGAAATTTTTAATGAATAT
CATACATATAATCAATC
Found at i:11636356 original size:51 final size:51
Alignment explanation
Indices: 11636215--11636349 Score: 184
Period size: 51 Copynumber: 2.6 Consensus size: 51
11636205 GGTACATATC
*
11636215 TTTTAATGAATATAGTACATTACACCAT-GATCTGACATAGTAATTGAAAT
1 TTTTAATGAATATCGTACATTACACCATAGATCTGACATAGTAATTGAAAT
* * * **
11636265 TTTTAATGAATATCATACATTACAACAATATATCTGACATA-TTGTTGAAAT
1 TTTTAATGAATATCGTACATTAC-ACCATAGATCTGACATAGTAATTGAAAT
11636316 TTTTAATGAATATCGTACATTACACCAGTAGATC
1 TTTTAATGAATATCGTACATTACACCA-TAGATC
11636350 CCACATAATA
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
50 24 0.33
51 39 0.53
52 10 0.14
ACGTcount: A:0.39, C:0.13, G:0.10, T:0.37
Consensus pattern (51 bp):
TTTTAATGAATATCGTACATTACACCATAGATCTGACATAGTAATTGAAAT
Found at i:11636562 original size:20 final size:19
Alignment explanation
Indices: 11636537--11636585 Score: 73
Period size: 18 Copynumber: 2.6 Consensus size: 19
11636527 CCCGAAATTA
11636537 ATAAAATATTTTTTTAAAAT
1 ATAAAATATTTTTTT-AAAT
11636557 ATAAAATA-TTTTTTAAAT
1 ATAAAATATTTTTTTAAAT
*
11636575 GTAAAATATTT
1 ATAAAATATTT
11636586 AAATATATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 11 0.41
19 8 0.30
20 8 0.30
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (19 bp):
ATAAAATATTTTTTTAAAT
Found at i:11638392 original size:22 final size:22
Alignment explanation
Indices: 11638367--11638560 Score: 83
Period size: 22 Copynumber: 8.9 Consensus size: 22
11638357 ATGATTGGAA
* * *
11638367 ATTATGTTATTAATGATTTATT
1 ATTATATTATCAATGATTTACT
11638389 ATTATATTATCAATGATTTACT
1 ATTATATTATCAATGATTTACT
* * * * *
11638411 ACTA-AGCTATTAATTATATACT
1 ATTATA-TTATCAATGATTTACT
* * *
11638433 ACTATATTATCAGTGATTTATT
1 ATTATATTATCAATGATTTACT
* * *
11638455 ATTAAATTAAT-ATTAATTTACT
1 ATTATATT-ATCAATGATTTACT
** *
11638477 ACAAT-TTATTAATGATTTACT
1 ATTATATTATCAATGATTTACT
* *
11638498 ACTTA-ATTATAAATAATTTACT
1 A-TTATATTATCAATGATTTACT
* * * **
11638520 TTTAAATTGTTGATGATTTACT
1 ATTATATTATCAATGATTTACT
* *
11638542 ACTATGTTA-CTAATGATTT
1 ATTATATTATC-AATGATTT
11638561 GTTATAAAGT
Statistics
Matches: 124, Mismatches: 40, Indels: 16
0.69 0.22 0.09
Matches are distributed among these distances:
20 2 0.02
21 16 0.13
22 103 0.83
23 3 0.02
ACGTcount: A:0.37, C:0.08, G:0.06, T:0.49
Consensus pattern (22 bp):
ATTATATTATCAATGATTTACT
Found at i:11638582 original size:66 final size:65
Alignment explanation
Indices: 11638470--11638605 Score: 166
Period size: 66 Copynumber: 2.1 Consensus size: 65
11638460 ATTAATATTA
* * *
11638470 ATTTACTACAATTTATTAATGATTTACTACTTAATTATAAATAATTTACTTTTAAATTGTTGATG
1 ATTTACTACAATTTACTAATGATTTACTACTAAATTATAAATAATTTACTATTAAATTGTTGATG
* ** * * *
11638535 ATTTACTACTATGTTACTAATGATTTGTTA-TAAAGTTATAATTAATTTACTATTAATTTTTTGA
1 ATTTACTACAAT-TTACTAATGATTTACTACTAAA-TTATAAATAATTTACTATTAAATTGTTGA
11638599 TG
64 TG
11638601 ATTTA
1 ATTTA
11638606 TTATAAAGTT
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
65 14 0.23
66 46 0.77
ACGTcount: A:0.35, C:0.07, G:0.07, T:0.51
Consensus pattern (65 bp):
ATTTACTACAATTTACTAATGATTTACTACTAAATTATAAATAATTTACTATTAAATTGTTGATG
Found at i:11638583 original size:44 final size:45
Alignment explanation
Indices: 11638535--11638638 Score: 112
Period size: 44 Copynumber: 2.4 Consensus size: 45
11638525 ATTGTTGATG
*
11638535 ATTTACTACT-ATGTTACTAATGATTTGTTATAAAGTTAT-AATTA
1 ATTTACTACTAAT-TTACTAATGATTTATTATAAAGTTATCAATTA
* ** *
11638579 ATTTACTATTAATTTTTTGATGATTTATTATAAAGTTATCAATT-
1 ATTTACTACTAATTTACTAATGATTTATTATAAAGTTATCAATTA
11638623 A-TTA--ACTAATTTACTA
1 ATTTACTACTAATTTACTA
11638639 CTAAATTATC
Statistics
Matches: 49, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
41 8 0.16
43 3 0.06
44 32 0.65
45 6 0.12
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.50
Consensus pattern (45 bp):
ATTTACTACTAATTTACTAATGATTTATTATAAAGTTATCAATTA
Found at i:11638657 original size:22 final size:22
Alignment explanation
Indices: 11638619--11638726 Score: 101
Period size: 22 Copynumber: 4.9 Consensus size: 22
11638609 TAAAGTTATC
*
11638619 AATTATTAACTAATTTACTACTA
1 AATTATCAA-TAATTTACTACTA
** *
11638642 AATTATCACCAATTTACAACTA
1 AATTATCAATAATTTACTACTA
* * * *
11638664 AGTTATTAGTGATTTACTACTA
1 AATTATCAATAATTTACTACTA
* *
11638686 AACTATCAATAATTTA-TATATA
1 AATTATCAATAATTTACTA-CTA
11638708 AATTATCAATAATTTACTA
1 AATTATCAATAATTTACTA
11638727 TTATGTTATT
Statistics
Matches: 66, Mismatches: 17, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
21 2 0.03
22 55 0.83
23 9 0.14
ACGTcount: A:0.44, C:0.13, G:0.03, T:0.41
Consensus pattern (22 bp):
AATTATCAATAATTTACTACTA
Found at i:11638723 original size:44 final size:44
Alignment explanation
Indices: 11638619--11638726 Score: 119
Period size: 44 Copynumber: 2.4 Consensus size: 44
11638609 TAAAGTTATC
* *
11638619 AATTATTAACTAATTTACTACTAAATTATCACCAATTTACAACTA
1 AATTATTAA-TAATTTACTACTAAACTATCAACAATTTACAACTA
* * * * *
11638664 AGTTATTAGTGATTTACTACTAAACTATCAATAATTTATATA-TA
1 AATTATTAATAATTTACTACTAAACTATCAACAATTTACA-ACTA
*
11638708 AATTATCAATAATTTACTA
1 AATTATTAATAATTTACTA
11638727 TTATGTTATT
Statistics
Matches: 51, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
44 43 0.84
45 8 0.16
ACGTcount: A:0.44, C:0.13, G:0.03, T:0.41
Consensus pattern (44 bp):
AATTATTAATAATTTACTACTAAACTATCAACAATTTACAACTA
Done.