Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15507587
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 71 of 91
Found at i:11835582 original size:24 final size:24
Alignment explanation
Indices: 11835534--11835589 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
11835524 TTTATCTTTA
*
11835534 TTTCATTTTTATTTTTGTTTTACT
1 TTTCATTTTTATTTTTGTTTCACT
11835558 TTTC-TTTATTATTTTT-TTCTCACT
1 TTTCATTT-TTATTTTTGTT-TCACT
11835582 TTT-ATTTT
1 TTTCATTTT
11835590 GTTTTATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
23 6 0.21
24 22 0.79
ACGTcount: A:0.12, C:0.11, G:0.02, T:0.75
Consensus pattern (24 bp):
TTTCATTTTTATTTTTGTTTCACT
Found at i:11835757 original size:119 final size:119
Alignment explanation
Indices: 11835623--11836083 Score: 632
Period size: 119 Copynumber: 3.9 Consensus size: 119
11835613 AATAAAATCC
11835623 AAAAAAATATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAAA
1 AAAAAAA-ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC-AAA
11835688 AAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAAATTT
64 AAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATCAAAATTT
** * *
11835743 AAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCGAAA
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTT-CAAAA
* * * * *
11835808 AATATGTTTTTAGG-GAAAAATTGAAAGTATCAATTTTTCTTGAAAATCAAAGTTTT
65 AAAATATTTTT-GGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATCAAA-ATTT
* * *
11835864 CAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTCAAAAA
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAAAA
*
11835928 AAAT-TTTTT-GAGGAAAAGTTGAAAGTATCAA-TTTTCTTTAAAAATCAAAGTTT
66 AAATATTTTTGGA-GAAAAGTTGAAAGTATCAATTTTTC-TTAAAAATCAAAATTT
** * * * *
11835981 TGAAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTTCTCGAAAATAAAAGTTTC--AAA
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAAAA
11836044 AAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTTCTT
66 AAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTTCTT
11836084 GCACAAGAAC
Statistics
Matches: 303, Mismatches: 27, Indels: 25
0.85 0.08 0.07
Matches are distributed among these distances:
116 8 0.03
117 79 0.26
118 48 0.16
119 100 0.33
120 19 0.06
121 49 0.16
ACGTcount: A:0.44, C:0.07, G:0.14, T:0.36
Consensus pattern (119 bp):
AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAAAA
AAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATCAAAATTT
Found at i:11835775 original size:58 final size:59
Alignment explanation
Indices: 11835622--11836084 Score: 584
Period size: 58 Copynumber: 7.8 Consensus size: 59
11835612 AAATAAAATC
*
11835622 CAAAAAAATATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTT
1 CAAAAAAA-ATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAGTTT
* *
11835683 CAAAAAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAAATTT
1 C-AAAAAAAATATTTTTGG-GAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAGTTT
** *
11835743 -AAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTT
1 CAAAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAGTTT
* * * *
11835802 CCGAAAAATATGTTTTTAGGGAAAAATTGAAAGTATCAATTTTTCTTGAAAATCAAAGTTTT
1 -CAAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAG-TTT
* * *
11835864 C-AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTT
1 CAAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAGTTT
*
11835922 CAAAAAAAAT-TTTTTGAGGAAAAGTTGAAAGTATCAA-TTTTCTTTAAAAATCAAAGTTT
1 CAAAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTTC-TTGAAAATCAAAGTTT
** * *
11835981 -TGAAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTTCTCGAAAATAAAAGTTT
1 CAAAAAAAATATTTTTGG-GAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAGTTT
11836040 C--AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTTCTTG
1 CAAAAAAAATATTTTTGG-GAAAAGTTGAAAGTATCAATTTTTCTTG
11836085 CACAAGAACA
Statistics
Matches: 358, Mismatches: 28, Indels: 35
0.85 0.07 0.08
Matches are distributed among these distances:
57 5 0.01
58 133 0.37
59 62 0.17
60 57 0.16
61 90 0.25
62 11 0.03
ACGTcount: A:0.44, C:0.07, G:0.14, T:0.35
Consensus pattern (59 bp):
CAAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAGTTT
Found at i:11835929 original size:179 final size:176
Alignment explanation
Indices: 11835625--11836079 Score: 707
Period size: 179 Copynumber: 2.6 Consensus size: 176
11835615 TAAAATCCAA
*
11835625 AAAAATATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAAAAA
1 AAAAATATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAGTTTC--AAAA
* *
11835690 AAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTAAAAAAAAGGTT
63 AAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTAAAAAAAAAGTT
*
11835755 TTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCG
128 TTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTT-CG
* *
11835805 AAAAATATGTTTTTAGGGAAAAATTGAAAGTATCAATTTTTCTTGAAAATCAAAGTTTTCAAAAA
1 AAAAATATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAG-TTTCAAAAA
* * * *
11835870 AATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAATTTT
64 AATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTAAAAAAAAAGTTT
* *
11835935 TTGAGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAATCAAAGTTTTG
129 TTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTCG
* *
11835983 AAAAA-ATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTTCTCGAAAATAAAAGTTTC-AAAAA
1 AAAAATATATTTTTGG-GAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAGTTTCAAAAAA
11836046 ATATTTTTGGAGAAAAGTTGAAAGTATCAATTTT
65 ATATTTTTGGAGAAAAGTTGAAAGTATCAATTTT
11836080 TCTTGCACAA
Statistics
Matches: 255, Mismatches: 18, Indels: 9
0.90 0.06 0.03
Matches are distributed among these distances:
175 38 0.15
176 6 0.02
177 42 0.16
178 6 0.02
179 108 0.42
180 51 0.20
181 4 0.02
ACGTcount: A:0.44, C:0.06, G:0.14, T:0.35
Consensus pattern (176 bp):
AAAAATATATTTTTGGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAGTTTCAAAAAAA
TATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTAAAAAAAAAGTTTTT
GAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTCG
Found at i:11836010 original size:25 final size:25
Alignment explanation
Indices: 11835980--11836068 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
11835970 AATCAAAGTT
11835980 TTGAAAAAATATTTTTGGAGAAAAG
1 TTGAAAAAATATTTTTGGAGAAAAG
* *
11836005 TTGAAAGTATCAAT-TTTTCTCGAAAATAAAAG
1 TTGAAA--A--AATATTTT-T-G--GAGAAAAG
*
11836037 TTTCAAAAAATATTTTTGGAGAAAAG
1 -TTGAAAAAATATTTTTGGAGAAAAG
11836063 TTGAAA
1 TTGAAA
11836069 GTATCAATTT
Statistics
Matches: 48, Mismatches: 6, Indels: 20
0.65 0.08 0.27
Matches are distributed among these distances:
25 11 0.23
26 6 0.12
27 1 0.02
28 5 0.10
29 8 0.17
30 5 0.10
31 1 0.02
32 6 0.12
33 5 0.10
ACGTcount: A:0.46, C:0.04, G:0.16, T:0.34
Consensus pattern (25 bp):
TTGAAAAAATATTTTTGGAGAAAAG
Found at i:11838043 original size:36 final size:36
Alignment explanation
Indices: 11838001--11838074 Score: 112
Period size: 36 Copynumber: 2.1 Consensus size: 36
11837991 TTTTTAAGGA
* *
11838001 TTCCTTTTGTTTCTAATGTAATAATAATTTTTTATT
1 TTCCTTTTATTTCAAATGTAATAATAATTTTTTATT
* *
11838037 TTCCTTTTATTTCAAATGTAATATTTATTTTTTATT
1 TTCCTTTTATTTCAAATGTAATAATAATTTTTTATT
11838073 TT
1 TT
11838075 TATATTAACT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.24, C:0.08, G:0.04, T:0.64
Consensus pattern (36 bp):
TTCCTTTTATTTCAAATGTAATAATAATTTTTTATT
Found at i:11840185 original size:15 final size:15
Alignment explanation
Indices: 11840161--11840190 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
11840151 AAAGTGAGTA
*
11840161 TAGATGAGGAAAATT
1 TAGATAAGGAAAATT
11840176 TAGATAAGGAAAATT
1 TAGATAAGGAAAATT
11840191 CATGGAAAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.23, T:0.27
Consensus pattern (15 bp):
TAGATAAGGAAAATT
Found at i:11840418 original size:19 final size:19
Alignment explanation
Indices: 11840394--11840431 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
11840384 AGAAAAAGAA
11840394 AATGACAACCAGACTCGTC
1 AATGACAACCAGACTCGTC
11840413 AATGACAACCAGACTCGTC
1 AATGACAACCAGACTCGTC
11840432 TGCTTCTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.32, G:0.16, T:0.16
Consensus pattern (19 bp):
AATGACAACCAGACTCGTC
Found at i:11841038 original size:6 final size:7
Alignment explanation
Indices: 11841023--11841047 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
11841013 AATATTATAA
11841023 TTTTATT
1 TTTTATT
11841030 TTTTATT
1 TTTTATT
11841037 TTTTATT
1 TTTTATT
11841044 TTTT
1 TTTT
11841048 CTGTGTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTATT
Found at i:11847223 original size:22 final size:22
Alignment explanation
Indices: 11847195--11847242 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
11847185 TATTAAAATT
*
11847195 TAATTTACTAA-AATATTTAAAA
1 TAATTTA-TAACAAAATTTAAAA
11847217 TAATTTATAACAAAATTTAAAA
1 TAATTTATAACAAAATTTAAAA
11847239 -AATT
1 TAATT
11847243 AGATCAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (22 bp):
TAATTTATAACAAAATTTAAAA
Found at i:11847500 original size:31 final size:29
Alignment explanation
Indices: 11847445--11847503 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 29
11847435 TTTTTTATTT
*
11847445 TTTTAAATCCATATATTATTTTTTTTCAA
1 TTTTAAATCCATATATTATATTTTTTCAA
11847474 TTTTAAA-CCATATTATTTTATATTTTTTCA
1 TTTTAAATCCATA-TA--TTATATTTTTTCA
11847504 TTATTTTTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 5 0.19
29 9 0.35
31 12 0.46
ACGTcount: A:0.31, C:0.10, G:0.00, T:0.59
Consensus pattern (29 bp):
TTTTAAATCCATATATTATATTTTTTCAA
Found at i:11850683 original size:27 final size:27
Alignment explanation
Indices: 11850617--11850683 Score: 64
Period size: 28 Copynumber: 2.4 Consensus size: 27
11850607 TTTTTTCTAC
* *
11850617 TTTTTTAATATTTTATATATAATATATA
1 TTTTTTAAT-TTTAATAGATAATATATA
* *
11850645 TTTTTATGATTTTAATAGATTAAT-TTTA
1 TTTTT-TAATTTTAATAGA-TAATATATA
11850673 TTTTTTAATTT
1 TTTTTTAATTT
11850684 AAATGCTTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
27 5 0.16
28 20 0.62
29 7 0.22
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (27 bp):
TTTTTTAATTTTAATAGATAATATATA
Found at i:11851231 original size:22 final size:21
Alignment explanation
Indices: 11851180--11851231 Score: 50
Period size: 22 Copynumber: 2.4 Consensus size: 21
11851170 TTGGCAAAAG
* *
11851180 AATGAAAGAAAAAAAGAATTA
1 AATGAAATAAAAAAAGAATGA
* *
11851201 AATTAAAATAAAAAAGGAAATGA
1 AA-TGAAATAAAAAAAG-AATGA
11851224 AATGAAAT
1 AATGAAAT
11851232 CATAGCAAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
21 2 0.08
22 16 0.67
23 6 0.25
ACGTcount: A:0.69, C:0.00, G:0.13, T:0.17
Consensus pattern (21 bp):
AATGAAATAAAAAAAGAATGA
Found at i:11851948 original size:16 final size:16
Alignment explanation
Indices: 11851927--11851960 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
11851917 TTAGAAGTTC
11851927 TTTATTATTTGTATGT
1 TTTATTATTTGTATGT
11851943 TTTATTATTTGTATGT
1 TTTATTATTTGTATGT
11851959 TT
1 TT
11851961 CATGAGTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.18, C:0.00, G:0.12, T:0.71
Consensus pattern (16 bp):
TTTATTATTTGTATGT
Found at i:11863203 original size:26 final size:26
Alignment explanation
Indices: 11863174--11863225 Score: 70
Period size: 28 Copynumber: 2.0 Consensus size: 26
11863164 AGGAAAGAAA
*
11863174 GAAAA-AAGAAAAAAGAGAAAAAAATT
1 GAAAAGAAAAAAAAAGA-AAAAAAATT
11863200 GAAAATGAAAAAAAAAGAAAAAAAAT
1 GAAAA-GAAAAAAAAAGAAAAAAAAT
11863226 AATAATAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 5 0.22
27 8 0.35
28 10 0.43
ACGTcount: A:0.79, C:0.00, G:0.13, T:0.08
Consensus pattern (26 bp):
GAAAAGAAAAAAAAAGAAAAAAAATT
Found at i:11863219 original size:16 final size:16
Alignment explanation
Indices: 11863167--11863221 Score: 56
Period size: 18 Copynumber: 3.2 Consensus size: 16
11863157 AAGAAGAAGG
11863167 AAAGAAAGAAAAAAGAAA
1 AAAGAAA-AAAAAAG-AA
*
11863185 AAAGAGAAAAAAATTGAA
1 AAAGA-AAAAAAA-AGAA
*
11863203 AATGAAAAAAAAAGAA
1 AAAGAAAAAAAAAGAA
11863219 AAA
1 AAA
11863222 AAATAATAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
16 5 0.16
17 7 0.23
18 16 0.52
19 3 0.10
ACGTcount: A:0.80, C:0.00, G:0.15, T:0.05
Consensus pattern (16 bp):
AAAGAAAAAAAAAGAA
Found at i:11863486 original size:22 final size:22
Alignment explanation
Indices: 11863460--11863519 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
11863450 TGTTAAATTT
11863460 TAATTTGATAAAATATTTAAAA
1 TAATTTGATAAAATATTTAAAA
* *
11863482 TAATTT-ACAACAAAATTTAAAA
1 TAATTTGATAA-AATATTTAAAA
* *
11863504 AAATTAGATCAAAATA
1 TAATTTGAT-AAAATA
11863520 CTTCAAACTA
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
21 3 0.10
22 20 0.69
23 4 0.14
24 2 0.07
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.33
Consensus pattern (22 bp):
TAATTTGATAAAATATTTAAAA
Found at i:11863518 original size:21 final size:22
Alignment explanation
Indices: 11863474--11863518 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
11863464 TTGATAAAAT
*
11863474 ATTTAAAATAATTTACAACAAA
1 ATTTAAAATAAATTACAACAAA
* *
11863496 ATTTAAAA-AAATTAGATCAAA
1 ATTTAAAATAAATTACAACAAA
11863517 AT
1 AT
11863519 ACTTCAAACT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.60, C:0.07, G:0.02, T:0.31
Consensus pattern (22 bp):
ATTTAAAATAAATTACAACAAA
Found at i:11864740 original size:2 final size:2
Alignment explanation
Indices: 11864733--11864759 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
11864723 GCTAACGATT
11864733 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
11864760 CTTTTTGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11864999 original size:23 final size:23
Alignment explanation
Indices: 11864973--11865017 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
11864963 TATTATTGCA
*
11864973 ATTCCTCAAAGTTAAACGTTAAG
1 ATTCATCAAAGTTAAACGTTAAG
* **
11864996 ATTCATTACTGTTAAACGTTAA
1 ATTCATCAAAGTTAAACGTTAA
11865018 TATCATGGCC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.36
Consensus pattern (23 bp):
ATTCATCAAAGTTAAACGTTAAG
Found at i:11872790 original size:19 final size:18
Alignment explanation
Indices: 11872763--11872800 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
11872753 TTAAATACTC
11872763 ATTTATCAATTATTTTTTA
1 ATTTATCAATT-TTTTTTA
*
11872782 ATTTTTCAATTTTTTTTA
1 ATTTATCAATTTTTTTTA
11872800 A
1 A
11872801 AAATTTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (18 bp):
ATTTATCAATTTTTTTTA
Found at i:11872832 original size:20 final size:20
Alignment explanation
Indices: 11872807--11872845 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
11872797 TTAAAAATTT
11872807 ATTTTCAAAAACTCTTAAAA
1 ATTTTCAAAAACTCTTAAAA
*
11872827 ATTTTCAAAAATTCTTAAA
1 ATTTTCAAAAACTCTTAAA
11872846 TACTTTTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (20 bp):
ATTTTCAAAAACTCTTAAAA
Found at i:11874112 original size:19 final size:18
Alignment explanation
Indices: 11874089--11874131 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
11874079 ATTTGTCATA
11874089 AAAATAATTTAATAAATTT
1 AAAATAATTT-ATAAATTT
* * *
11874108 TAAATTATTTATTAATTT
1 AAAATAATTTATAAATTT
11874126 AAAATA
1 AAAATA
11874132 TTAAATAATT
Statistics
Matches: 19, Mismatches: 5, Indels: 1
0.76 0.20 0.04
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
AAAATAATTTATAAATTT
Found at i:11874128 original size:17 final size:17
Alignment explanation
Indices: 11874106--11874155 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
11874096 TTTAATAAAT
11874106 TTTAAATTATTTATTAA
1 TTTAAATTATTTATTAA
* * *
11874123 TTTAAAATATTAAATAA
1 TTTAAATTATTTATTAA
11874140 TTTAAAATT-TTTATTA
1 TTT-AAATTATTTATTA
11874156 CATATAATTT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
17 22 0.85
18 4 0.15
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
TTTAAATTATTTATTAA
Found at i:11874130 original size:25 final size:27
Alignment explanation
Indices: 11874093--11874143 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 27
11874083 GTCATAAAAA
* *
11874093 TAATTTAATAAATTTTAAATTATTTAT
1 TAATTTAATAAATATTAAATAATTTAT
11874120 TAATTT-A-AAATATTAAATAATTTA
1 TAATTTAATAAATATTAAATAATTTA
11874144 AAATTTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 15 0.68
26 1 0.05
27 6 0.27
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (27 bp):
TAATTTAATAAATATTAAATAATTTAT
Found at i:11874441 original size:3 final size:3
Alignment explanation
Indices: 11874433--11874471 Score: 69
Period size: 3 Copynumber: 12.7 Consensus size: 3
11874423 TTGAACAAAC
11874433 TAT TAT TAT TAT TATT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TA
11874472 ATTGGTGCTT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:11875794 original size:12 final size:12
Alignment explanation
Indices: 11875773--11875822 Score: 57
Period size: 12 Copynumber: 4.2 Consensus size: 12
11875763 TTTTAAATTA
11875773 TAATAAAATATT
1 TAATAAAATATT
*
11875785 TAATATAATATT
1 TAATAAAATATT
*
11875797 TAA-AAAATTTT
1 TAATAAAATATT
**
11875808 TAATACGATATT
1 TAATAAAATATT
11875820 TAA
1 TAA
11875823 ATTATGAATT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
11 9 0.29
12 22 0.71
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (12 bp):
TAATAAAATATT
Found at i:11875809 original size:23 final size:23
Alignment explanation
Indices: 11875777--11875823 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
11875767 AAATTATAAT
*
11875777 AAAATATTTAATATAATATTTAA
1 AAAATATTTAATACAATATTTAA
* *
11875800 AAAATTTTTAATACGATATTTAA
1 AAAATATTTAATACAATATTTAA
11875823 A
1 A
11875824 TTATGAATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (23 bp):
AAAATATTTAATACAATATTTAA
Found at i:11878247 original size:22 final size:22
Alignment explanation
Indices: 11878207--11878250 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
11878197 TGTATATTTA
*
11878207 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCTCTAAAATTAAG
11878229 TATTTGTATC-CTTAAAATTAAG
1 TATTTGTATCTC-TAAAATTAAG
11878251 GATAAAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.45
Consensus pattern (22 bp):
TATTTGTATCTCTAAAATTAAG
Found at i:11887541 original size:124 final size:118
Alignment explanation
Indices: 11887319--11887626 Score: 423
Period size: 124 Copynumber: 2.6 Consensus size: 118
11887309 TTGTGTAGGA
* *** * *
11887319 AAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTTCAAACTTTGATTTCCAAGGAAAAT
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTCGAAAATTTTGATTTTCAAGGAAAAT
* *
11887384 TGATACTTTCAACTTTTCCTCAAAAATCTTTTTTTTTTTTTGAAATTCTATTTTTAAGG
65 TGATACTTTCAACTTTTCCTCAAAAATC----CTTTTTTTGGAAATT-TATTTTTAAGG
*
11887443 AAAATTGATACTTTCAACTTTTCCCTAAAAATACCTTTTCGAAAATTTTGATTTTCAAGGAAAAT
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTCGAAAATTTTGATTTTCAAGGAAAAT
11887508 TGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTGGAAATTTATTTTTAAGG
65 TGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTGGAAATTTATTTTTAAGG
11887562 AAAATTGATACTTTCAACTTTT-CCT-----TATTTTTCGAAAATTTTGATTTTCAA-GAAAATT
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTCGAAAATTTTGATTTTCAAGGAAAATT
11887620 GATACTT
66 GATACTT
11887627 CAAAAATATA
Statistics
Matches: 173, Mismatches: 11, Indels: 13
0.88 0.06 0.07
Matches are distributed among these distances:
111 14 0.08
112 23 0.13
113 2 0.01
118 3 0.02
119 33 0.19
120 13 0.08
124 85 0.49
ACGTcount: A:0.33, C:0.14, G:0.07, T:0.46
Consensus pattern (118 bp):
AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTCGAAAATTTTGATTTTCAAGGAAAATT
GATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTGGAAATTTATTTTTAAGG
Found at i:11887568 original size:59 final size:61
Alignment explanation
Indices: 11887319--11887586 Score: 309
Period size: 60 Copynumber: 4.4 Consensus size: 61
11887309 TTGTGTAGGA
* * ** *
11887319 AAAATTGATACTTTCAACTTTTCCTTAAAAAT-ATTTTTTTTCAAACTTTGATTTCCAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTGGAAACTTTGATTTTCAAGG
* * *
11887379 AAAATTGATACTTTCAACTTTTCCTCAAAAATCTTTTTTTTTTTTTGAAA-TTCT-ATTTTTAAG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATC----CTTTTTTTGGAAACTT-TGATTTTCAAG
11887442 G
61 G
* * *
11887443 AAAATTGATACTTTCAACTTTTCC-CTAAAAATACC--TTTTCGAAAATTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCTC-AAAAAT-CCTTTTTTTGGAAACTTTGATTTTCAAGG
*
11887503 AAAATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTGGAAA-TTT-ATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTGGAAACTTTGATTTTCAAGG
11887562 AAAATTGATACTTTCAACTTTTCCT
1 AAAATTGATACTTTCAACTTTTCCT
11887587 TATTTTTCGA
Statistics
Matches: 182, Mismatches: 13, Indels: 27
0.82 0.06 0.12
Matches are distributed among these distances:
59 44 0.24
60 75 0.41
61 9 0.05
63 1 0.01
64 40 0.22
65 13 0.07
ACGTcount: A:0.32, C:0.15, G:0.07, T:0.46
Consensus pattern (61 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTGGAAACTTTGATTTTCAAGG
Found at i:11887680 original size:13 final size:13
Alignment explanation
Indices: 11887659--11887696 Score: 60
Period size: 12 Copynumber: 3.0 Consensus size: 13
11887649 TTATGAAAAT
*
11887659 AGAACAAAATAAA
1 AGAAAAAAATAAA
11887672 AGAAAAAAAT-AA
1 AGAAAAAAATAAA
11887684 AGAAAAAAATAAA
1 AGAAAAAAATAAA
11887697 CAAAAATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 12 0.52
13 11 0.48
ACGTcount: A:0.82, C:0.03, G:0.08, T:0.08
Consensus pattern (13 bp):
AGAAAAAAATAAA
Found at i:11887685 original size:12 final size:12
Alignment explanation
Indices: 11887659--11887728 Score: 65
Period size: 13 Copynumber: 5.9 Consensus size: 12
11887649 TTATGAAAAT
*
11887659 AGAACAAAATAAA
1 AGAAAAAAAT-AA
11887672 AGAAAAAAATAA
1 AGAAAAAAATAA
11887684 AGAAAAAAAT-A
1 AGAAAAAAATAA
*
11887695 A-ACAAAAATAA
1 AGAAAAAAATAA
* *
11887706 A-AATAAGATAA
1 AGAAAAAAATAA
11887717 AGATAAAAAATA
1 AGA-AAAAAATA
11887729 TTAAATAAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
10 7 0.15
11 12 0.26
12 13 0.28
13 15 0.32
ACGTcount: A:0.79, C:0.03, G:0.07, T:0.11
Consensus pattern (12 bp):
AGAAAAAAATAA
Found at i:11887693 original size:35 final size:34
Alignment explanation
Indices: 11887654--11887728 Score: 91
Period size: 34 Copynumber: 2.2 Consensus size: 34
11887644 TATTTTTATG
11887654 AAAATAGAAC-AAAATAAAAGAAAAAAATAAAGA-AA
1 AAAATA-AACAAAAAT-AAA-AAAAAAATAAAGATAA
* *
11887689 AAAATAAACAAAAATAAAAATAAGATAAAGATAA
1 AAAATAAACAAAAATAAAAAAAAAATAAAGATAA
11887723 AAAATA
1 AAAATA
11887729 TTAAATAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
33 11 0.31
34 14 0.39
35 11 0.31
ACGTcount: A:0.79, C:0.03, G:0.07, T:0.12
Consensus pattern (34 bp):
AAAATAAACAAAAATAAAAAAAAAATAAAGATAA
Found at i:11887702 original size:13 final size:12
Alignment explanation
Indices: 11887664--11887702 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
11887654 AAAATAGAAC
11887664 AAAATAAAAGAAA
1 AAAATAAAA-AAA
*
11887677 AAAATAAAGAAA
1 AAAATAAAAAAA
*
11887689 AAAATAAACAAA
1 AAAATAAAAAAA
11887701 AA
1 AA
11887703 TAAAAATAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 16 0.67
13 8 0.33
ACGTcount: A:0.85, C:0.03, G:0.05, T:0.08
Consensus pattern (12 bp):
AAAATAAAAAAA
Found at i:11887709 original size:16 final size:17
Alignment explanation
Indices: 11887688--11887725 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
11887678 AAATAAAGAA
11887688 AAAAATAA-ACAAAAAT
1 AAAAATAAGACAAAAAT
* *
11887704 AAAAATAAGATAAAGAT
1 AAAAATAAGACAAAAAT
11887721 AAAAA
1 AAAAA
11887726 ATATTAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.79, C:0.03, G:0.05, T:0.13
Consensus pattern (17 bp):
AAAAATAAGACAAAAAT
Found at i:11887753 original size:4 final size:4
Alignment explanation
Indices: 11887746--11887800 Score: 58
Period size: 4 Copynumber: 13.2 Consensus size: 4
11887736 AATCTAATCT
* *
11887746 AATA AATAA AATA AATA AAT- AATA AACCA AATA AACA AATA AATTA AATA
1 AATA AAT-A AATA AATA AATA AATA AA-TA AATA AATA AATA AA-TA AATA
11887796 AATA A
1 AATA A
11887801 CCTGGAAGCG
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
3 3 0.07
4 29 0.67
5 11 0.26
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.22
Consensus pattern (4 bp):
AATA
Found at i:11887760 original size:9 final size:9
Alignment explanation
Indices: 11887665--11887800 Score: 66
Period size: 9 Copynumber: 14.7 Consensus size: 9
11887655 AAATAGAACA
*
11887665 AAATAAAAG
1 AAATAAAAT
11887674 AAA-AAAAT
1 AAATAAAAT
*
11887682 AAAGAAAA-
1 AAATAAAAT
*
11887690 AAATAAACAA
1 AAATAAA-AT
11887700 AAATAAAAAT
1 AAAT-AAAAT
11887710 AAGATAAAGAT
1 AA-ATAAA-AT
11887721 AAA-AAATATT
1 AAATAAA-A-T
11887731 AAAT-AAAT
1 AAATAAAAT
* **
11887739 CTAATCTAAT
1 -AAATAAAAT
11887749 AAATAAAAT
1 AAATAAAAT
11887758 AAATAAATAAT
1 AAAT-AA-AAT
**
11887769 AAACCAAAT
1 AAATAAAAT
*
11887778 AAA-CAAAT
1 AAATAAAAT
*
11887786 AAATTAAAT
1 AAATAAAAT
11887795 AAATAA
1 AAATAA
11887801 CCTGGAAGCG
Statistics
Matches: 101, Mismatches: 13, Indels: 26
0.72 0.09 0.19
Matches are distributed among these distances:
8 22 0.22
9 41 0.41
10 23 0.23
11 15 0.15
ACGTcount: A:0.73, C:0.04, G:0.03, T:0.20
Consensus pattern (9 bp):
AAATAAAAT
Found at i:11888683 original size:58 final size:56
Alignment explanation
Indices: 11888559--11889105 Score: 765
Period size: 58 Copynumber: 9.5 Consensus size: 56
11888549 TCTTGTGTAG
*
11888559 GGAAAATTGATACTTTCAACTTTTCC-CCAAAATATTTTTTGGAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTT-GAAATTTATTTCTAA
*
11888615 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAA-TTT-ATTTCTAA
* * * *
11888673 GGAAAATTGATAC-TTCTGACTTTTCCTCAAAAATCCTTTTTCGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTC-AACTTTTCCTCAAAAAT-ATTTTT-TGAAATTTATTTCTAA
* *
11888731 GGAAAATTGATACTTTCAACTTTTCCCCGAAAATATTTTTTTGGAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTT-GAAATTTATTTCTAA
* * *
11888789 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTCGAAAATTTATTTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAT-ATTTTTTG-AAATTTA-TTTCTAA
*
11888848 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTAGAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTT-GAAATTTATTTCTAA
*
11888906 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAA-TTT-ATTTCTAA
* *
11888964 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCTTTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAT-ATTTTTT-GAAATTTATTTCTAA
*
11889022 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAA-TTT-ATTTCTAA
11889080 GGAAAATTGATACTTTCAACTTTTCC
1 GGAAAATTGATACTTTCAACTTTTCC
11889106 CTAGAAATTT
Statistics
Matches: 441, Mismatches: 30, Indels: 38
0.87 0.06 0.07
Matches are distributed among these distances:
56 38 0.09
57 38 0.09
58 285 0.65
59 71 0.16
60 9 0.02
ACGTcount: A:0.34, C:0.15, G:0.09, T:0.43
Consensus pattern (56 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAATTTATTTCTAA
Found at i:11889084 original size:291 final size:289
Alignment explanation
Indices: 11888559--11889105 Score: 965
Period size: 291 Copynumber: 1.9 Consensus size: 289
11888549 TCTTGTGTAG
*
11888559 GGAAAATTGATACTTTCAACTTTTCCCCAAAATATTTTTTGGAAATTTATTTCTAAGGAAAATTG
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAATATTTTTTAGAAATTTATTTCTAAGGAAAATTG
11888624 ATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAACTTTGATTTCCAAGGAAAATTGATACTTC
66 ATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAACTTTGATTTCCAAGGAAAATTGATACTTC
*
11888689 TGACTTTTCCTCAAAAATCCTTTTTCGGAAATTTATTTTTAAGGAAAATTGATACTTTCAACTTT
131 TAACTTTTCCTCAAAAATCCTTTTTCGGAAATTTATTTTTAAGGAAAATTGATACTTTCAACTTT
* *
11888754 TCCCCGAAAATATTTTTTTGGAAATTTATTTCTAAGGAAAATTGATACTTTCAACTTTTCCTCAA
196 TCCCCAAAAATATTTTTTTGGAAATTTATTTCCAAGGAAAATTGATACTTTCAACTTTTCCTCAA
11888819 AAATCCTTTTTCGAAAATTTATTTTTTAA
261 AAATCCTTTTTCGAAAATTTATTTTTTAA
11888848 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTAGAAATTTATTTCTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCCC-AAAATA-TTTTTTAGAAATTTATTTCTAAGGAAAAT
11888913 TGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAACTTTGATTTCCAAGGAAAATTGATACT
64 TGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAACTTTGATTTCCAAGGAAAATTGATACT
* *
11888978 T-TCAACTTTTCCTCAAAAATCTTTTTTTGGAAATTTATTTTTAAGGAAAATTGATACTTTCAAC
129 TCT-AACTTTTCCTCAAAAATCCTTTTTCGGAAATTTATTTTTAAGGAAAATTGATACTTTCAAC
*
11889042 TTTTCCTCAAAAATA-TTTTTT-GAAACTTTGATTTCCAAGGAAAATTGATACTTTCAACTTTTC
193 TTTTCCCCAAAAATATTTTTTTGGAAA-TTT-ATTTCCAAGGAAAATTGATACTTTCAACTTTTC
11889105 C
256 C
11889106 CTAGAAATTT
Statistics
Matches: 246, Mismatches: 7, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
289 32 0.13
290 16 0.07
291 198 0.80
ACGTcount: A:0.34, C:0.15, G:0.09, T:0.43
Consensus pattern (289 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAATATTTTTTAGAAATTTATTTCTAAGGAAAATTG
ATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAACTTTGATTTCCAAGGAAAATTGATACTTC
TAACTTTTCCTCAAAAATCCTTTTTCGGAAATTTATTTTTAAGGAAAATTGATACTTTCAACTTT
TCCCCAAAAATATTTTTTTGGAAATTTATTTCCAAGGAAAATTGATACTTTCAACTTTTCCTCAA
AAATCCTTTTTCGAAAATTTATTTTTTAA
Found at i:11889223 original size:5 final size:6
Alignment explanation
Indices: 11889157--11889222 Score: 73
Period size: 6 Copynumber: 11.3 Consensus size: 6
11889147 AAAATAGAAT
* * * *
11889157 AAATAA AAATAA AAATAA AAATAA AAATAA AAA-AT AGAGAA AAGT-A
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
*
11889203 AAACAA AAATAA AAATAA AA
1 AAATAA AAATAA AAATAA AA
11889223 TTAAGGTAAA
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
5 6 0.12
6 43 0.88
ACGTcount: A:0.80, C:0.02, G:0.05, T:0.14
Consensus pattern (6 bp):
AAATAA
Found at i:11890335 original size:6 final size:6
Alignment explanation
Indices: 11890326--11890455 Score: 51
Period size: 6 Copynumber: 20.8 Consensus size: 6
11890316 AACCAAAAAT
11890326 TAATAA TAATAA T-ATAA TAATAA TAAATATA TAACTATA TAAATAA -AATACA
1 TAATAA TAATAA TAATAA TAATAA T-AATA-A TAA-TA-A T-AATAA TAATA-A
* * *
11890378 T-ATAA -ATCTAA T-CTAA TAA-AA T-ATATA TATATATA TATTAA TACATAA
1 TAATAA TA-ATAA TAATAA TAATAA TAATA-A TA-ATA-A TAATAA TA-ATAA
*
11890426 TAATAA TAAATAA TAAAAA TACATAA -AATA
1 TAATAA T-AATAA TAATAA TA-ATAA TAATA
11890456 CAAAAGAGAA
Statistics
Matches: 100, Mismatches: 6, Indels: 37
0.70 0.04 0.26
Matches are distributed among these distances:
4 1 0.01
5 22 0.22
6 36 0.36
7 23 0.23
8 16 0.16
9 2 0.02
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.34
Consensus pattern (6 bp):
TAATAA
Found at i:11890359 original size:25 final size:24
Alignment explanation
Indices: 11890321--11890443 Score: 82
Period size: 25 Copynumber: 5.2 Consensus size: 24
11890311 TACAAAACCA
*
11890321 AAAATTAATA-ATAATAATATAAT
1 AAAATAAATATATAATAATATAAT
11890344 AATAATAAATATATAACT-ATATAAAT
1 AA-AATAAATATATAA-TAATAT-AAT
* *
11890370 AAAATACATATA-AATCTAATCTAAT
1 AAAATAAATATATAA--TAATATAAT
*
11890395 AAAATATATATAT-ATATATATTAAT
1 AAAATAAATATATAATA-ATA-TAAT
*
11890420 -ACAT-AATA-ATAATAA-ATAAT
1 AAAATAAATATATAATAATATAAT
11890440 AAAA
1 AAAA
11890444 ATACATAAAA
Statistics
Matches: 81, Mismatches: 8, Indels: 24
0.72 0.07 0.21
Matches are distributed among these distances:
20 4 0.05
21 3 0.04
22 3 0.04
23 10 0.12
24 14 0.17
25 38 0.47
26 9 0.11
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (24 bp):
AAAATAAATATATAATAATATAAT
Found at i:11890445 original size:46 final size:47
Alignment explanation
Indices: 11890328--11890451 Score: 123
Period size: 46 Copynumber: 2.6 Consensus size: 47
11890318 CCAAAAATTA
11890328 ATAATAATAATATAATAATAATAAATATATAACTATATAAATAAAATAC
1 ATAATAATAATA-AATAATAA-AAATATATAACTATATAAATAAAATAC
* * * *
11890377 AT-ATAA-ATCTAATCTAAT-AAAATATAT-A-TATATATATATTAATAC
1 ATAATAATA-ATAA-ATAATAAAAATATATAACTATATAAATA-AAATAC
*
11890422 ATAATAATAATAAATAATAAAAATACATAA
1 ATAATAATAATAAATAATAAAAATATATAA
11890452 AATACAAAAG
Statistics
Matches: 61, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
44 9 0.15
45 12 0.20
46 23 0.38
47 5 0.08
48 10 0.16
49 2 0.03
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (47 bp):
ATAATAATAATAAATAATAAAAATATATAACTATATAAATAAAATAC
Found at i:11891292 original size:29 final size:26
Alignment explanation
Indices: 11891233--11891302 Score: 72
Period size: 29 Copynumber: 2.6 Consensus size: 26
11891223 TACTACAAGA
*
11891233 AAAAAAATAATAAAT-AACTTATAAT
1 AAAATAATAATAAATAAACTTATAAT
*
11891258 ATAATAATAATAAATACAACTATATAAAT
1 AAAATAATAATAAATA-AACT-TAT-AAT
11891287 AAAATACAT-ATAAATA
1 AAAATA-ATAATAAATA
11891303 TTAACAGAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
25 13 0.35
27 4 0.11
28 3 0.08
29 15 0.41
30 2 0.05
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.29
Consensus pattern (26 bp):
AAAATAATAATAAATAAACTTATAAT
Found at i:11891803 original size:102 final size:99
Alignment explanation
Indices: 11891598--11891789 Score: 314
Period size: 99 Copynumber: 1.9 Consensus size: 99
11891588 ATTCGATAAT
*
11891598 ATACATTTAAGGGTCTCATGTTCACATCTTATGTGTAGAAAAAAAAACACGAATTAGAAAAAGGA
1 ATACATTTAAGAGTCTCATGTTCACATCTTATGTGTAG--AAAAAAACACGAATTAGAAAAAGGA
11891663 AGAAAATTGTCATTGACCAATTTTCTCTCATACATA
64 AGAAAATTGTCATTGACCAATTTTCTCTCATACATA
* * *
11891699 ATACATTTTAAGAGTCTCGTGTTCACATTTTATGTGTAG-AAAAAACACTAATTAGAAAAAGGAA
1 ATACA-TTTAAGAGTCTCATGTTCACATCTTATGTGTAGAAAAAAACACGAATTAGAAAAAGGAA
11891763 GAAAATTGTCATTGACCAATTTTCTCT
65 GAAAATTGTCATTGACCAATTTTCTCT
11891790 ATATGTATTT
Statistics
Matches: 86, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
99 51 0.59
101 5 0.06
102 30 0.35
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.32
Consensus pattern (99 bp):
ATACATTTAAGAGTCTCATGTTCACATCTTATGTGTAGAAAAAAACACGAATTAGAAAAAGGAAG
AAAATTGTCATTGACCAATTTTCTCTCATACATA
Found at i:11891957 original size:6 final size:6
Alignment explanation
Indices: 11891932--11891970 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
11891922 TAATTTGATT
* *
11891932 AATATA ATAAATA CATATA AATATA AATATA AATATA AA
1 AATATA A-ATATA AATATA AATATA AATATA AATATA AA
11891971 AGAATTAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
6 24 0.86
7 4 0.14
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (6 bp):
AATATA
Found at i:11895363 original size:50 final size:50
Alignment explanation
Indices: 11895304--11895404 Score: 159
Period size: 50 Copynumber: 2.0 Consensus size: 50
11895294 TGAAAGATTA
**
11895304 TAAAAAATAAATTATTGTGAATTTATTAATCCC-GTCATATATAAACCTGT
1 TAAAAAATAAATTATCATGAATTTATTAATCCCAGT-ATATATAAACCTGT
*
11895354 TAAAAAATAAGTTATCATGAATTTATTAATCCCAGTATATATAAACCTGT
1 TAAAAAATAAATTATCATGAATTTATTAATCCCAGTATATATAAACCTGT
11895404 T
1 T
11895405 GAACCAGTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
50 45 0.96
51 2 0.04
ACGTcount: A:0.43, C:0.12, G:0.08, T:0.38
Consensus pattern (50 bp):
TAAAAAATAAATTATCATGAATTTATTAATCCCAGTATATATAAACCTGT
Found at i:11899895 original size:14 final size:15
Alignment explanation
Indices: 11899876--11899913 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
11899866 GGAGGTAATT
11899876 TTAAAATAT-ATTTA
1 TTAAAATATAATTTA
*
11899890 TTAAAATTTAATTTA
1 TTAAAATATAATTTA
*
11899905 CTAAAATAT
1 TTAAAATAT
11899914 TTGAAATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (15 bp):
TTAAAATATAATTTA
Found at i:11899945 original size:21 final size:22
Alignment explanation
Indices: 11899899--11899945 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
11899889 ATTAAAATTT
*
11899899 AATTTACTAAAATATTTGAAAT
1 AATTTACTAAAATATTTGAAAA
*
11899921 AATTTAC-AACAA-ATTTTAAAA
1 AATTTACTAA-AATATTTGAAAA
11899942 AATT
1 AATT
11899946 AGATCAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.38
Consensus pattern (22 bp):
AATTTACTAAAATATTTGAAAA
Found at i:11905964 original size:22 final size:22
Alignment explanation
Indices: 11905915--11905960 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
11905905 AAGGGTTCAA
*
11905915 TTTATTATATTAAAATCTTTAC
1 TTTATTATATTAAAATCTATAC
* *
11905937 TTTATTGTTTTAAAATCTAT-C
1 TTTATTATATTAAAATCTATAC
11905958 TTT
1 TTT
11905961 TATTCAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.59
Consensus pattern (22 bp):
TTTATTATATTAAAATCTATAC
Found at i:11907153 original size:14 final size:15
Alignment explanation
Indices: 11907134--11907168 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
11907124 GAGGCAATTT
11907134 TAAAATTT-ATTTAA
1 TAAAATTTAATTTAA
*
11907148 TAAAATTTAATTTGA
1 TAAAATTTAATTTAA
11907163 TAAAAT
1 TAAAAT
11907169 ATTTAAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (15 bp):
TAAAATTTAATTTAA
Found at i:11909282 original size:30 final size:30
Alignment explanation
Indices: 11909197--11909295 Score: 94
Period size: 30 Copynumber: 3.3 Consensus size: 30
11909187 TCATTTCATA
* * *
11909197 TTTTATTACAATCAATTAAAT-TTTAAATTT
1 TTTTTTTAC-ATCAAATAAATCTTTAAATAT
* *
11909227 TTTATTTTACATCAATTAAACCTTTAAATAT
1 TTT-TTTTACATCAAATAAATCTTTAAATAT
* *
11909258 TTATTTTTACCT-AAATAAATCTTTAAACAT
1 TT-TTTTTACATCAAATAAATCTTTAAATAT
11909288 TTTTTTTA
1 TTTTTTTA
11909296 TCAAATTAAC
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
29 6 0.10
30 30 0.51
31 22 0.37
32 1 0.02
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (30 bp):
TTTTTTTACATCAAATAAATCTTTAAATAT
Found at i:11910151 original size:2 final size:2
Alignment explanation
Indices: 11910138--11910176 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
11910128 TTGCTTCGTG
*
11910138 TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
11910177 GAAATATACT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:11911511 original size:58 final size:56
Alignment explanation
Indices: 11911438--11912040 Score: 543
Period size: 58 Copynumber: 10.5 Consensus size: 56
11911428 GCTTTTAGTC
* *
11911438 AAGG-AAATTAATACTTTCAACTTTTCTGTAAAATATTTTTTTAAAATTTCTATTTTT
1 AAGGAAAATTGATACTTTCAACTTTTCT-TAAAATATTTTTTTGAAATTT-TATTTTT
* * * * *
11911495 AAAGAAAATTGATACTTTCAACTTTTCCTCAAAAAATATCTTTTGAAATTTTTATTTCT
1 AAGGAAAATTGATACTTTCAACTTTT-CTTAAAATAT-TTTTTTGAAA-TTTTATTTTT
* * * *
11911554 AAGGAAAATTGGTACTCTCAACTTCTTCTCAAAA-ATATTTTTTGAAAATTTTACTTTT
1 AAGGAAAATTGATACTTTCAACTT-TTCTTAAAATAT-TTTTTTG-AAATTTTATTTTT
* * * * *
11911612 AAGGAAAATTGATATTTTCAACTTTTCATTAAAATGTTTTCTTTGAAATATTACTTTC
1 AAGGAAAATTGATACTTTCAACTTTTC-TTAAAATATTTT-TTTGAAATTTTATTTTT
** *
11911670 AAGGAAAATTGATACTTTCAACTTTTTCTTAAAGCA-TTTTTTGAAAATTTTATTTTC
1 AAGGAAAATTGATACTTTCAAC-TTTTCTTAAAATATTTTTTTG-AAATTTTATTTTT
** * *
11911727 AATAAAAATTGATACTTTTAACTTTTTCTTAAAGTATTTTTTTGAAATTTTTATTTTT
1 AAGGAAAATTGATACTTTCAAC-TTTTCTTAAAATATTTTTTTGAAA-TTTTATTTTT
* * * * * *
11911785 AAGGAAAATTAATATTTTCAACTTTTTTTTAAAATGTTTTTGTGAAATTTCATTTTT
1 AAGGAAAATTGATACTTTCAAC-TTTTCTTAAAATATTTTTTTGAAATTTTATTTTT
* * * *
11911842 AAGGAAAATTGATACTTTCAACTTTTCCTTAAAATGTTTTCTTTGAAATATTACTTTC
1 AAGGAAAATTGATACTTTCAACTTTT-CTTAAAATATTTT-TTTGAAATTTTATTTTT
* * **
11911900 AAGGAAGATTGATATTTTCAACTTTTCCTTAAAGCA-TTTTTTGAAATTTTTTATTTTT
1 AAGGAAAATTGATACTTTCAACTTTT-CTTAAAATATTTTTTTGAAA--TTTTATTTTT
* * * * ** *
11911958 AAAGAAAATTGATGCTTTCAATTTTTCCTAAAA-ACATTTTGGAAATTTT-TGTTTT
1 AAGGAAAATTGATACTTTCAACTTTTCTTAAAATATTTTTTTGAAATTTTAT-TTTT
* * *
11912013 CAAGAAAAATTAATACTTTCAATTTTTC
1 -AAGGAAAATTGATACTTTCAACTTTTC
11912041 CTAGAAAACA
Statistics
Matches: 456, Mismatches: 70, Indels: 41
0.80 0.12 0.07
Matches are distributed among these distances:
54 1 0.00
55 8 0.02
56 39 0.09
57 112 0.25
58 234 0.51
59 57 0.12
60 5 0.01
ACGTcount: A:0.34, C:0.10, G:0.08, T:0.48
Consensus pattern (56 bp):
AAGGAAAATTGATACTTTCAACTTTTCTTAAAATATTTTTTTGAAATTTTATTTTT
Found at i:11911739 original size:115 final size:115
Alignment explanation
Indices: 11911436--11912056 Score: 591
Period size: 115 Copynumber: 5.4 Consensus size: 115
11911426 ATGCTTTTAG
* * *
11911436 TCAAGG-AAATTAATACTTTCAAC-TTTTCTGTAAAATATTTTTTTAAAATTTCTATTTTTAAAG
1 TCAAGGAAAATTGATACTTTCAACTTTTTCT-TAAAACATTTTTTGAAAATTT-TATTTTTAAA-
* * * *
11911499 AAAATTGATACTTTCAACTTTTCCTCAAAA-AATATCTTTTGAAATTTTTA-TT
63 AAAATTGATACTTTCAACTTTTCCTTAAAATATTTTC-TTTGAAATTATTACTT
* * * * * * *
11911551 TCTAAGGAAAATTGGTACTCTCAACTTCTTCTCAAAAATATTTTTTGAAAATTTTACTTTTAAGG
1 TC-AAGGAAAATTGATACTTTCAACTTTTTCT-TAAAACATTTTTTGAAAATTTTATTTTTAA-A
* * *
11911616 AAAATTGATATTTTCAACTTTTCATTAAAATGTTTTCTTTGAAA-TATTACTT
63 AAAATTGATACTTTCAACTTTTCCTTAAAATATTTTCTTTGAAATTATTACTT
* *
11911668 TCAAGGAAAATTGATACTTTCAACTTTTTCTTAAAGCATTTTTTGAAAATTTTATTTTCAATAAA
1 TCAAGGAAAATTGATACTTTCAACTTTTTCTTAAAACATTTTTTGAAAATTTTATTTTTAA-AAA
* * * * *
11911733 AATTGATACTTTTAACTTTTTCTTAAAGTATTTT-TTTGAAATTTTTATTT
65 AATTGATACTTTCAACTTTTCCTTAAAATATTTTCTTTGAAATTATTACTT
* * * * ** * *
11911783 TTAAGGAAAATTAATATTTTCAACTTTTTTTTAAAATGTTTTTGTG-AAATTTCATTTTTAAGGA
1 TCAAGGAAAATTGATACTTTCAACTTTTTCTTAAAACATTTTT-TGAAAATTTTATTTTTAA-AA
*
11911847 AAATTGATACTTTCAACTTTTCCTTAAAATGTTTTCTTTGAAA-TATTACTT
64 AAATTGATACTTTCAACTTTTCCTTAAAATATTTTCTTTGAAATTATTACTT
* * * * *
11911898 TCAAGGAAGATTGATATTTTCAACTTTTCCTTAAAGCATTTTTTGAAATTTTTTATTTTTAAAGA
1 TCAAGGAAAATTGATACTTTCAACTTTTTCTTAAAACATTTTTTGAAA-ATTTTATTTTTAAA-A
* * ** * * **
11911963 AAATTGATGCTTTCAATTTTTCC-TAAAA-ACATT-TTGGAAATTTTTGTTT
64 AAATTGATACTTTCAACTTTTCCTTAAAATATTTTCTTTGAAATTATTACTT
* * *
11912012 TCAAGAAAAATTAATACTTTCAA-TTTTTCCTAGAAAACATTTTTT
1 TCAAGGAAAATTGATACTTTCAACTTTTT-CT-TAAAACATTTTTT
11912057 TTGTCATTTT
Statistics
Matches: 413, Mismatches: 78, Indels: 30
0.79 0.15 0.06
Matches are distributed among these distances:
113 10 0.02
114 37 0.09
115 203 0.49
116 76 0.18
117 60 0.15
118 27 0.07
ACGTcount: A:0.34, C:0.10, G:0.08, T:0.48
Consensus pattern (115 bp):
TCAAGGAAAATTGATACTTTCAACTTTTTCTTAAAACATTTTTTGAAAATTTTATTTTTAAAAAA
ATTGATACTTTCAACTTTTCCTTAAAATATTTTCTTTGAAATTATTACTT
Found at i:11911787 original size:173 final size:168
Alignment explanation
Indices: 11911438--11912042 Score: 583
Period size: 173 Copynumber: 3.5 Consensus size: 168
11911428 GCTTTTAGTC
* * *
11911438 AAGG-AAATTAATACTTTCAACTTTTCTGTAAAATATTTTTTTAAAATTTCTATTTTTAAAGAAA
1 AAGGAAAATTAATACTTTCAACTTTTCT-TAAAATGTTTTTTTGAAA-TT-TATTTTTAAGGAAA
* * * *
11911502 ATTGATACTTTCAACTTTTCCTCAAAAAATATCTTTTGAAATTTTTATTTCTAAGGAAAATTGGT
63 ATTGATACTTTCAACTTTTCCT-TAAAGAT-T-TTTTGAAAATTTTATTTC-AAGGAAAATTGAT
* * * * * *
11911567 ACTCTCAACTTCTTCTCAAA-AATATTTTTTGAAAATTTTACTTTT
124 ACTTTTAACTTTTTCTTAAAGAAT-TTTTTTGAAATTTTTATTTTT
* * * *
11911612 AAGGAAAATTGATATTTTCAACTTTTCATTAAAATGTTTTCTTTGAAATATTACTTTCAAGGAAA
1 AAGGAAAATTAATACTTTCAACTTTTC-TTAAAATGTTTT-TTTGAAAT-TTATTTTTAAGGAAA
* **
11911677 ATTGATACTTTCAACTTTTTCTTAAAGCATTTTTTGAAAATTTTATTTTCAATAAAAATTGATAC
63 ATTGATACTTTCAACTTTTCCTTAAAG-ATTTTTTGAAAATTTTA-TTTCAAGGAAAATTGATAC
*
11911742 TTTTAACTTTTTCTTAAAGTATTTTTTTGAAATTTTTATTTTT
126 TTTTAACTTTTTCTTAAAGAATTTTTTTGAAATTTTTATTTTT
* * *
11911785 AAGGAAAATTAATATTTTCAACTTTTTTTTAAAATGTTTTTGTGAAATTTCATTTTTAAGGAAAA
1 AAGGAAAATTAATACTTTCAAC-TTTTCTTAAAATGTTTTTTTGAAATTT-ATTTTTAAGGAAAA
* * *
11911850 TTGATACTTTCAACTTTTCCTTAAAATGTTTTCTTTG-AAATATTACTTTCAAGGAAGATTGATA
64 TTGATACTTTCAACTTTTCCTT-AAA-GATTT-TTTGAAAATTTTA-TTTCAAGGAAAATTGATA
* *
11911914 -TTTTCAACTTTTCCTTAAAGCA-TTTTTTGAAATTTTTTATTTTT
125 CTTTT-AACTTTTTCTTAAAGAATTTTTTTGAAA-TTTTTATTTTT
* * * * * *** * * *
11911958 AAAGAAAATTGATGCTTTCAATTTTTCCTAAAA-ACATTTTGGAAATTTTTGTTTTCAAGAAAAA
1 AAGGAAAATTAATACTTTCAACTTTTCTTAAAATGTTTTTTTGAAATTTAT-TTTT-AAGGAAAA
* *
11912022 TTAATACTTTCAATTTTTCCT
64 TTGATACTTTCAACTTTTCCT
11912043 AGAAAACATT
Statistics
Matches: 364, Mismatches: 51, Indels: 34
0.81 0.11 0.08
Matches are distributed among these distances:
170 1 0.00
171 16 0.04
172 89 0.24
173 162 0.45
174 23 0.06
175 65 0.18
176 8 0.02
ACGTcount: A:0.34, C:0.10, G:0.08, T:0.48
Consensus pattern (168 bp):
AAGGAAAATTAATACTTTCAACTTTTCTTAAAATGTTTTTTTGAAATTTATTTTTAAGGAAAATT
GATACTTTCAACTTTTCCTTAAAGATTTTTTGAAAATTTTATTTCAAGGAAAATTGATACTTTTA
ACTTTTTCTTAAAGAATTTTTTTGAAATTTTTATTTTT
Found at i:11912158 original size:17 final size:16
Alignment explanation
Indices: 11912136--11912194 Score: 59
Period size: 17 Copynumber: 3.6 Consensus size: 16
11912126 AATTTTAACT
11912136 AATAAATAAAAAAGCCA
1 AATAAATAAAAAAG-CA
*
11912153 AATAAAT-AAAAAGATA
1 AATAAATAAAAAAG-CA
*
11912169 AATAGAATAAATAAGCA
1 AATA-AATAAAAAAGCA
11912186 AA-AAATAAA
1 AATAAATAAA
11912195 TAAAAATAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
15 6 0.17
16 12 0.33
17 13 0.36
18 5 0.14
ACGTcount: A:0.73, C:0.05, G:0.07, T:0.15
Consensus pattern (16 bp):
AATAAATAAAAAAGCA
Found at i:11912484 original size:18 final size:18
Alignment explanation
Indices: 11912453--11912488 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
11912443 TAAAAACCCA
* *
11912453 AAATCTCTTTTTTTTTTC
1 AAATCGCTTCTTTTTTTC
11912471 AAATCGCTTCTTTTTTTC
1 AAATCGCTTCTTTTTTTC
11912489 CTCTCTCTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.19, G:0.03, T:0.61
Consensus pattern (18 bp):
AAATCGCTTCTTTTTTTC
Found at i:11913388 original size:85 final size:85
Alignment explanation
Indices: 11913214--11913580 Score: 274
Period size: 85 Copynumber: 4.4 Consensus size: 85
11913204 TGGATTTAAT
* * * * *
11913214 ATAGGTCAAAATCC-AAACTAAAATGACCTAGATGGAGTCGAAGTCTAAAATAAATAACTTA-AG
1 ATAGGTCAAAATCCAAAAC-AAAATGACCTGGATAGAATCAAAGTCTGAAATAAATAACTTAGA-
* * * * *
11913277 CTGAACCGAAAATGGGTTTAGT
64 CTGAATCGAAAAAGGATCTAGC
* * *
11913299 ATAGGTCGAAATCCAAAACAAAATGACCTGGATAGAATCAAAGTCTGAAATAAACAACTTAGATT
1 ATAGGTCAAAATCCAAAACAAAATGACCTGGATAGAATCAAAGTCTGAAATAAATAACTTAGACT
* *
11913364 AAATCGAAAAAGGATCTGGC
66 GAATCGAAAAAGGATCTAGC
* * *
11913384 ATAGGTC----T--AAATCAAAATGACCTAGATTA-AA-CTAAAGTATGAAATAAATAACTTAGA
1 ATAGGTCAAAATCCAAAACAAAATGACCTGGA-TAGAATC-AAAGTCTGAAATAAATAACTTAGA
* * *
11913441 CTGGATCGAAGAAGGATCTGGC
64 CTGAATCGAAAAAGGATCTAGC
* * * ** * * *
11913463 ATAGG-CTAAAATCTAAAACAAAATGACCAGGATGGAGCCGAAGTTTGAAA-AGAATAACTTGGA
1 ATAGGTC-AAAATCCAAAACAAAATGACCTGGATAGAATCAAAGTCTGAAATA-AATAACTTAGA
11913526 CTGAATC-AAAGAAGGATCTAGC
64 CTGAATCGAAA-AAGGATCTAGC
* * ** *
11913548 ATAGATCGAAATTTAAAACAAAATAACCTGGAT
1 ATAGGTCAAAATCCAAAACAAAATGACCTGGAT
11913581 GAAACCGAAT
Statistics
Matches: 227, Mismatches: 39, Indels: 32
0.76 0.13 0.11
Matches are distributed among these distances:
78 2 0.01
79 63 0.28
80 2 0.01
81 1 0.00
83 1 0.00
84 4 0.02
85 147 0.65
86 7 0.03
ACGTcount: A:0.46, C:0.14, G:0.19, T:0.22
Consensus pattern (85 bp):
ATAGGTCAAAATCCAAAACAAAATGACCTGGATAGAATCAAAGTCTGAAATAAATAACTTAGACT
GAATCGAAAAAGGATCTAGC
Found at i:11913475 original size:79 final size:80
Alignment explanation
Indices: 11913313--11913480 Score: 211
Period size: 79 Copynumber: 2.1 Consensus size: 80
11913303 GTCGAAATCC
* * *
11913313 AAAA-CAAAATGACCTGGATAGAATCAAAGTCTGAAATAAACAACTTAGATTAAATCGAAAAAGG
1 AAAATCAAAATGACCTAGATAGAATCAAAGTATGAAATAAACAACTTAGACTAAATCGAAAAAGG
11913377 ATCTGGCATAGGTCT
66 ATCTGGCATAGGTCT
* ** *
11913392 -AAATCAAAATGACCTAGATTA-AA-CTAAAGTATGAAATAAATAACTTAGACTGGATCGAAGAA
1 AAAATCAAAATGACCTAGA-TAGAATC-AAAGTATGAAATAAACAACTTAGACTAAATCGAAAAA
11913454 GGATCTGGCATAGG-CT
64 GGATCTGGCATAGGTCT
11913470 AAAATCTAAAA
1 AAAATC-AAAA
11913481 CAAAATGACC
Statistics
Matches: 77, Mismatches: 7, Indels: 9
0.83 0.08 0.10
Matches are distributed among these distances:
78 6 0.08
79 65 0.84
80 6 0.08
ACGTcount: A:0.48, C:0.13, G:0.17, T:0.22
Consensus pattern (80 bp):
AAAATCAAAATGACCTAGATAGAATCAAAGTATGAAATAAACAACTTAGACTAAATCGAAAAAGG
ATCTGGCATAGGTCT
Found at i:11913595 original size:31 final size:31
Alignment explanation
Indices: 11913557--11913620 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
11913547 CATAGATCGA
*
11913557 AATTTAAAACAAAATAACCTGGATGAAACCG
1 AATTTAAAACAAAATAACCTAGATGAAACCG
11913588 AATTTAAAACAAAATAACCTAGATGAAACCG
1 AATTTAAAACAAAATAACCTAGATGAAACCG
11913619 AA
1 AA
11913621 GTCTAAAATG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.55, C:0.16, G:0.11, T:0.19
Consensus pattern (31 bp):
AATTTAAAACAAAATAACCTAGATGAAACCG
Found at i:11913604 original size:85 final size:85
Alignment explanation
Indices: 11913429--11913614 Score: 207
Period size: 85 Copynumber: 2.2 Consensus size: 85
11913419 AGTATGAAAT
* * * *
11913429 AAATAACTTAGACTGGATCGAAGAAGGATCTGGCATAGGCTAAAATCTAAAACAAAATGACCAGG
1 AAATAACTTAGACTGAATCAAAGAAGGATCTAGCATAGGCTAAAATCTAAAACAAAATAACCAGG
* * *
11913494 ATGGAGCCGAAGTTTGAAAA
66 ATGAAACCGAAGTTTAAAAA
* * * * * *
11913514 GAATAACTTGGACTGAATCAAAGAAGGATCTAGCATA-GATCGAAATTTAAAACAAAATAACCTG
1 AAATAACTTAGACTGAATCAAAGAAGGATCTAGCATAGGCT-AAAATCTAAAACAAAATAACCAG
11913578 GATGAAACCGAA-TTTAAAACA
65 GATGAAACCGAAGTTTAAAA-A
*
11913599 AAATAACCTAGA-TGAA
1 AAATAACTTAGACTGAA
11913615 ACCGAAGTCT
Statistics
Matches: 83, Mismatches: 16, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
84 12 0.14
85 71 0.86
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (85 bp):
AAATAACTTAGACTGAATCAAAGAAGGATCTAGCATAGGCTAAAATCTAAAACAAAATAACCAGG
ATGAAACCGAAGTTTAAAAA
Found at i:11913636 original size:31 final size:31
Alignment explanation
Indices: 11913561--11913628 Score: 109
Period size: 31 Copynumber: 2.2 Consensus size: 31
11913551 GATCGAAATT
* *
11913561 TAAAACAAAATAACCTGGATGAAACCGAATT
1 TAAAACAAAATAACCTAGATGAAACCGAATC
11913592 TAAAACAAAATAACCTAGATGAAACCGAAGTC
1 TAAAACAAAATAACCTAGATGAAACCGAA-TC
11913624 TAAAA
1 TAAAA
11913629 TGAATAACTT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
31 28 0.82
32 6 0.18
ACGTcount: A:0.54, C:0.16, G:0.12, T:0.18
Consensus pattern (31 bp):
TAAAACAAAATAACCTAGATGAAACCGAATC
Found at i:11913681 original size:116 final size:116
Alignment explanation
Indices: 11913476--11913692 Score: 269
Period size: 116 Copynumber: 1.9 Consensus size: 116
11913466 GGCTAAAATC
* * * * * *
11913476 TAAAACAAAATGACCAGGATGGAGCCGAAGTTTGAAAAGAATAACTTGGACTGAATCAAAGAAGG
1 TAAAACAAAATAACCAGGATGAAACCGAAGTCTGAAAAGAATAACTTGGACTGAACCAAAAAAGG
* * *
11913541 ATCTAGCATAGATCGAAATTTAAAACAAAATAACCTGGATGAAACCGAATT
66 ATCTAGAATAGATCAAAATCTAAAACAAAATAACCTGGATGAAACCGAATT
*
11913592 TAAAACAAAATAACCTA-GATGAAACCGAAGTCT-AAAATGAATAACTTGGACTGAGCCAAAAAA
1 TAAAACAAAATAACC-AGGATGAAACCGAAGTCTGAAAA-GAATAACTTGGACTGAACCAAAAAA
* * *
11913655 GGAT-TTGAAATAGGTCAAAATCTAAAACAAAATGACCT
64 GGATCTAG-AATAGATCAAAATCTAAAACAAAATAACCT
11913693 AAATGGAGCT
Statistics
Matches: 85, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
115 6 0.07
116 78 0.92
117 1 0.01
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (116 bp):
TAAAACAAAATAACCAGGATGAAACCGAAGTCTGAAAAGAATAACTTGGACTGAACCAAAAAAGG
ATCTAGAATAGATCAAAATCTAAAACAAAATAACCTGGATGAAACCGAATT
Found at i:11913745 original size:85 final size:86
Alignment explanation
Indices: 11913588--11913778 Score: 226
Period size: 85 Copynumber: 2.2 Consensus size: 86
11913578 GATGAAACCG
* * * *
11913588 AATT-TAAAACAAAATAACCTAGATGAAACCGAAGTCTAAAATGAATAACTTGGACTGAGCCAAA
1 AATTCTAAAACAAAATAACCTAAATGAAACCGAAGTCTAAAAGGAATAACTTGGACTAAACCAAA
*
11913652 AAAGGATTTGAAATAGGTCAA
66 AAAGGATTTGAAATAAGTCAA
* * * * *
11913673 AA-TCTAAAACAAAATGACCTAAATGGAGCTGAAGTCTAAAAGGAATAACTTGGACTAAACTGAA
1 AATTCTAAAACAAAATAACCTAAATGAAACCGAAGTCTAAAAGGAATAACTTGGACTAAAC-CAA
* * *
11913737 GAAA-GATTTGACATAAGTTAA
65 AAAAGGATTTGAAATAAGTCAA
*
11913758 AATTCAAAAACAAAATAACCT
1 AATTCTAAAACAAAATAACCT
11913779 GGATTGAATT
Statistics
Matches: 88, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
84 1 0.01
85 66 0.75
86 21 0.24
ACGTcount: A:0.50, C:0.13, G:0.15, T:0.21
Consensus pattern (86 bp):
AATTCTAAAACAAAATAACCTAAATGAAACCGAAGTCTAAAAGGAATAACTTGGACTAAACCAAA
AAAGGATTTGAAATAAGTCAA
Found at i:11915038 original size:3 final size:3
Alignment explanation
Indices: 11915023--11915088 Score: 116
Period size: 3 Copynumber: 22.3 Consensus size: 3
11915013 TCTGATCTTT
*
11915023 TTA TTA CTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
11915071 TTA TTA TTA TTA -TA TTA T
1 TTA TTA TTA TTA TTA TTA T
11915089 AAGTTGTTTT
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
2 2 0.03
3 58 0.97
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:11916195 original size:100 final size:100
Alignment explanation
Indices: 11916062--11916264 Score: 352
Period size: 100 Copynumber: 2.0 Consensus size: 100
11916052 TTAAAATATA
*
11916062 TTATTTTTCAAGAAGTTTGAGATTTTTTTACAAATAAATTAATTAGGCTCTTTCAAACTTAAATT
1 TTATTTTTCAAGAAGTTTGAGATTTCTTTACAAATAAATTAATTAGGCTCTTTCAAACTTAAATT
*
11916127 TATTGTGTTCAAATATATTATTCTTTAATTTAGAT
66 TATTATGTTCAAATATATTATTCTTTAATTTAGAT
* * * *
11916162 TTATTTTTCAATAATTTTGAGATTTCTTTACAAATAAATTAGTTTGGCTCTTTCAAACTTAAATT
1 TTATTTTTCAAGAAGTTTGAGATTTCTTTACAAATAAATTAATTAGGCTCTTTCAAACTTAAATT
11916227 TATTATGTTCAAATATATTATTCTTTAATTTAGAT
66 TATTATGTTCAAATATATTATTCTTTAATTTAGAT
11916262 TTA
1 TTA
11916265 GTGTTTTATG
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 97 1.00
ACGTcount: A:0.33, C:0.08, G:0.08, T:0.50
Consensus pattern (100 bp):
TTATTTTTCAAGAAGTTTGAGATTTCTTTACAAATAAATTAATTAGGCTCTTTCAAACTTAAATT
TATTATGTTCAAATATATTATTCTTTAATTTAGAT
Found at i:11917661 original size:17 final size:17
Alignment explanation
Indices: 11917641--11917679 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
11917631 TATTTATTTT
*
11917641 ATTTTTTTATAATAAAA
1 ATTTTTGTATAATAAAA
*
11917658 ATTTATGTATAATAAAA
1 ATTTTTGTATAATAAAA
11917675 ATTTT
1 ATTTT
11917680 CAAATAAAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (17 bp):
ATTTTTGTATAATAAAA
Found at i:11919296 original size:22 final size:22
Alignment explanation
Indices: 11919267--11919322 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 22
11919257 TAATAACTTT
* *
11919267 GTAGTAAATCAATTATAATATA
1 GTAGTAAATCAATAACAATATA
11919289 GTTA-TAAATGC-ATAACAATATA
1 G-TAGTAAAT-CAATAACAATATA
11919311 GTAGTAAATCAA
1 GTAGTAAATCAA
11919323 GGGCAACTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
21 3 0.11
22 22 0.79
23 3 0.11
ACGTcount: A:0.50, C:0.07, G:0.11, T:0.32
Consensus pattern (22 bp):
GTAGTAAATCAATAACAATATA
Found at i:11919394 original size:22 final size:22
Alignment explanation
Indices: 11919347--11919433 Score: 75
Period size: 22 Copynumber: 4.0 Consensus size: 22
11919337 AAAATAAGTG
* * * *
11919347 ATAACTTAGTAGTTAATTATTA
1 ATAACTTAATAGTAAATCAATA
* *
11919369 ATAACTTAATAATAAATCAATG
1 ATAACTTAATAGTAAATCAATA
* * * *
11919391 ATAACTTTATAGGAAATTAGTA
1 ATAACTTAATAGTAAATCAATA
*
11919413 ATAATTTAATAGTAAATCAAT
1 ATAACTTAATAGTAAATCAAT
11919434 TTCAATTTAA
Statistics
Matches: 48, Mismatches: 17, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
22 48 1.00
ACGTcount: A:0.48, C:0.06, G:0.08, T:0.38
Consensus pattern (22 bp):
ATAACTTAATAGTAAATCAATA
Found at i:11919409 original size:44 final size:44
Alignment explanation
Indices: 11919327--11919433 Score: 119
Period size: 44 Copynumber: 2.4 Consensus size: 44
11919317 AATCAAGGGC
* * ** *
11919327 AACTTATTAAAAAAT-AAGTGATAACTTAGTAGTTAATTATTAAT
1 AACTTAATAATAAATCAA-TGATAACTTAGTAGGAAATTAGTAAT
11919371 AACTTAATAATAAATCAATGATAACTTTA-TAGGAAATTAGTAAT
1 AACTTAATAATAAATCAATGATAAC-TTAGTAGGAAATTAGTAAT
* *
11919415 AATTTAATAGTAAATCAAT
1 AACTTAATAATAAATCAAT
11919434 TTCAATTTAA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
44 49 0.91
45 5 0.09
ACGTcount: A:0.50, C:0.06, G:0.08, T:0.36
Consensus pattern (44 bp):
AACTTAATAATAAATCAATGATAACTTAGTAGGAAATTAGTAAT
Found at i:11919674 original size:21 final size:21
Alignment explanation
Indices: 11919595--11919674 Score: 81
Period size: 22 Copynumber: 3.7 Consensus size: 21
11919585 AAAACATAAA
* *
11919595 AGTAAATCATTATAACTTAAT
1 AGTAAATTATGATAACTTAAT
***
11919616 AGTTAACCAATGATAACTTAAT
1 AG-TAAATTATGATAACTTAAT
11919638 AGTAAATTATGAATAACTTAAT
1 AGTAAATTATG-ATAACTTAAT
11919660 A-TAAATTACTGATAA
1 AGTAAATTA-TGATAA
11919675 TTTGATTTAT
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
21 19 0.39
22 30 0.61
ACGTcount: A:0.49, C:0.09, G:0.07, T:0.35
Consensus pattern (21 bp):
AGTAAATTATGATAACTTAAT
Found at i:11919755 original size:11 final size:10
Alignment explanation
Indices: 11919706--11919790 Score: 71
Period size: 11 Copynumber: 7.8 Consensus size: 10
11919696 TAGTAATTGG
*
11919706 TAATAAATTTA
1 TAATAAA-TAA
11919717 TAATAAATAA
1 TAATAAATAA
*
11919727 TAAAAAATTAA
1 TAATAAA-TAA
11919738 GTAATAAATCAA
1 -TAATAAAT-AA
*
11919750 TAATAACATAG
1 TAATAA-ATAA
*
11919761 CAATAAATACA
1 TAATAAATA-A
11919772 TAATAATATAA
1 TAATAA-ATAA
11919783 TAATAAAT
1 TAATAAAT
11919791 CATTTATAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
10 13 0.21
11 35 0.57
12 13 0.21
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (10 bp):
TAATAAATAA
Found at i:11921284 original size:11 final size:11
Alignment explanation
Indices: 11921259--11921330 Score: 56
Period size: 11 Copynumber: 6.5 Consensus size: 11
11921249 AGATAAATTG
* *
11921259 ATAAATTATTT
1 ATAAATTAATA
11921270 ATAAATTAATA
1 ATAAATTAATA
* *
11921281 ATAAATCAATG
1 ATAAATTAATA
*
11921292 ATAATTTAATA
1 ATAAATTAATA
* *
11921303 ATCAATT-ATT
1 ATAAATTAATA
*
11921313 ATAATTTAATAA
1 ATAAATTAAT-A
11921325 ATAAAT
1 ATAAAT
11921331 CATCAATAAC
Statistics
Matches: 45, Mismatches: 14, Indels: 3
0.73 0.23 0.05
Matches are distributed among these distances:
10 7 0.16
11 33 0.73
12 5 0.11
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (11 bp):
ATAAATTAATA
Found at i:11921316 original size:21 final size:21
Alignment explanation
Indices: 11921259--11921330 Score: 81
Period size: 22 Copynumber: 3.3 Consensus size: 21
11921249 AGATAAATTG
*
11921259 ATAAATTATTTATAAATTAATA
1 ATAAATTA-TTATAATTTAATA
* *
11921281 ATAAATCAATGATAATTTAATA
1 ATAAAT-TATTATAATTTAATA
*
11921303 ATCAATTATTATAATTTAATAA
1 ATAAATTATTATAATTTAAT-A
11921325 ATAAAT
1 ATAAAT
11921331 CATCAATAAC
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
21 12 0.29
22 28 0.68
23 1 0.02
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (21 bp):
ATAAATTATTATAATTTAATA
Found at i:11922749 original size:21 final size:21
Alignment explanation
Indices: 11922725--11922767 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
11922715 TAATTATGTT
11922725 ATTTTTAGTTATAATCTTATA
1 ATTTTTAGTTATAATCTTATA
11922746 ATTTTTAGTTATAATCTTATA
1 ATTTTTAGTTATAATCTTATA
11922767 A
1 A
11922768 CAACGTAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.56
Consensus pattern (21 bp):
ATTTTTAGTTATAATCTTATA
Found at i:11923729 original size:22 final size:21
Alignment explanation
Indices: 11923646--11923733 Score: 90
Period size: 22 Copynumber: 4.1 Consensus size: 21
11923636 TATTAAAAAT
* *
11923646 TTAAAAGTAATTA-ATATAAC
1 TTAATAGTAATTATAGATAAC
*
11923666 TTAATAGTAATTATCGATAAC
1 TTAATAGTAATTATAGATAAC
* *
11923687 TTAATTATTAATCAGTA-ATAAC
1 TTAA-TAGTAATTA-TAGATAAC
11923709 TTAATAGTAAATTATAGATAAC
1 TTAATAGT-AATTATAGATAAC
11923731 TTA
1 TTA
11923734 GCAGTAAACT
Statistics
Matches: 55, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
20 12 0.22
21 14 0.25
22 28 0.51
23 1 0.02
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.39
Consensus pattern (21 bp):
TTAATAGTAATTATAGATAAC
Found at i:11923813 original size:22 final size:22
Alignment explanation
Indices: 11923788--11923981 Score: 103
Period size: 22 Copynumber: 8.9 Consensus size: 22
11923778 TCAATAATTG
*
11923788 ATAACTTAATAGTAAATCAGTA
1 ATAACTTAGTAGTAAATCAGTA
* * *
11923810 ATAACATAATGGTAAATGCA-TA
1 ATAACTTAGTAGTAAAT-CAGTA
* * * * *
11923832 ACAACTTAGCAATAAATCAATT
1 ATAACTTAGTAGTAAATCAGTA
*
11923854 ATAA-TATAGTTGTAAATGCA-TA
1 ATAACT-TAGTAGTAAAT-CAGTA
*
11923876 ACT-ACATAGTAGTAAATCAG-A
1 A-TAACTTAGTAGTAAATCAGTA
* *
11923897 GATAACTTATTA-AAAATCAGTA
1 -ATAACTTAGTAGTAAATCAGTA
* * * *
11923919 ATAATTTAGTAGTTAATCATTG
1 ATAACTTAGTAGTAAATCAGTA
* * * *
11923941 ATAATTTAGTAATAAATCAATG
1 ATAACTTAGTAGTAAATCAGTA
*
11923963 ATAACTTAATAGTAAATCA
1 ATAACTTAGTAGTAAATCA
11923982 AGTTTGGTTT
Statistics
Matches: 130, Mismatches: 31, Indels: 22
0.71 0.17 0.12
Matches are distributed among these distances:
21 23 0.18
22 102 0.78
23 5 0.04
ACGTcount: A:0.48, C:0.09, G:0.10, T:0.32
Consensus pattern (22 bp):
ATAACTTAGTAGTAAATCAGTA
Found at i:11923838 original size:44 final size:44
Alignment explanation
Indices: 11923790--11923895 Score: 122
Period size: 44 Copynumber: 2.4 Consensus size: 44
11923780 AATAATTGAT
*
11923790 AACTTAATAGTAAATCAGTAATAACATAATGGTAAATGCATAAC
1 AACTTAGTAGTAAATCAGTAATAACATAATGGTAAATGCATAAC
* * * * * * *
11923834 AACTTAGCAATAAATCAATTATAATATAGTTGTAAATGCATAAC
1 AACTTAGTAGTAAATCAGTAATAACATAATGGTAAATGCATAAC
* *
11923878 TACATAGTAGTAAATCAG
1 AACTTAGTAGTAAATCAG
11923896 AGATAACTTA
Statistics
Matches: 49, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
44 49 1.00
ACGTcount: A:0.48, C:0.11, G:0.11, T:0.29
Consensus pattern (44 bp):
AACTTAGTAGTAAATCAGTAATAACATAATGGTAAATGCATAAC
Found at i:11923931 original size:43 final size:44
Alignment explanation
Indices: 11923882--11923981 Score: 112
Period size: 43 Copynumber: 2.3 Consensus size: 44
11923872 CATAACTACA
* * *
11923882 TAGTAGTAAATCAGAGATAACTTATTAA-AAATCAGTAATAATT
1 TAGTAGTAAATCAGAGATAACTTAGTAATAAATCAATAATAACT
* ** * *
11923925 TAGTAGTTAATCATTGATAATTTAGTAATAAATCAATGATAACT
1 TAGTAGTAAATCAGAGATAACTTAGTAATAAATCAATAATAACT
*
11923969 TAATAGTAAATCA
1 TAGTAGTAAATCA
11923982 AGTTTGGTTT
Statistics
Matches: 46, Mismatches: 10, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
43 23 0.50
44 23 0.50
ACGTcount: A:0.47, C:0.07, G:0.11, T:0.35
Consensus pattern (44 bp):
TAGTAGTAAATCAGAGATAACTTAGTAATAAATCAATAATAACT
Found at i:11923982 original size:22 final size:22
Alignment explanation
Indices: 11923661--11923982 Score: 89
Period size: 22 Copynumber: 14.9 Consensus size: 22
11923651 AGTAATTAAT
*
11923661 ATAACTTAATAGT-AAT-TATCG
1 ATAACTTAATAGTAAATCAAT-G
* * *
11923682 ATAACTTAATTA-TTAATCAGTA
1 ATAACTTAA-TAGTAAATCAATG
*
11923704 ATAACTTAATAGTAAAT-TATAG
1 ATAACTTAATAGTAAATCAAT-G
** *
11923726 ATAACTTAGCAGTAAA-CTA-G
1 ATAACTTAATAGTAAATCAATG
* * *
11923746 -T-ACTTAATAATAATTGAATG
1 ATAACTTAATAGTAAATCAATG
* ** *
11923766 ATAATTTTGTAGTCAAT-AATTG
1 ATAACTTAATAGTAAATCAA-TG
* *
11923788 ATAACTTAATAGTAAATCAGTA
1 ATAACTTAATAGTAAATCAATG
* * *
11923810 ATAACATAATGGTAAATGC-ATA
1 ATAACTTAATAGTAAAT-CAATG
* ** * *
11923832 ACAACTTAGCAATAAATCAATT
1 ATAACTTAATAGTAAATCAATG
* * *
11923854 ATAA-TATAGTTGTAAATGC-ATA
1 ATAACT-TAATAGTAAAT-CAATG
* *
11923876 ACT-ACATAGTAGTAAATCAGA-G
1 A-TAACTTAATAGTAAATCA-ATG
* * * *
11923898 ATAACTTATTA-AAAATCAGTA
1 ATAACTTAATAGTAAATCAATG
* * * *
11923919 ATAATTTAGTAGTTAATCATTG
1 ATAACTTAATAGTAAATCAATG
* * *
11923941 ATAATTTAGTAATAAATCAATG
1 ATAACTTAATAGTAAATCAATG
11923963 ATAACTTAATAGTAAATCAA
1 ATAACTTAATAGTAAATCAA
11923983 GTTTGGTTTA
Statistics
Matches: 216, Mismatches: 62, Indels: 45
0.67 0.19 0.14
Matches are distributed among these distances:
18 9 0.04
19 2 0.01
20 2 0.01
21 35 0.16
22 162 0.75
23 6 0.03
ACGTcount: A:0.47, C:0.09, G:0.10, T:0.34
Consensus pattern (22 bp):
ATAACTTAATAGTAAATCAATG
Found at i:11924301 original size:22 final size:21
Alignment explanation
Indices: 11924278--11924366 Score: 83
Period size: 22 Copynumber: 4.1 Consensus size: 21
11924268 AATTAAGTAG
11924278 TAAATTCATAATAACATAA-AA
1 TAAATT-ATAATAACATAATAA
*
11924299 GTAAATTAT-ATAATATAATAA
1 -TAAATTATAATAACATAATAA
*
11924320 TAAATTATTAATAACTTAATAA
1 TAAATTA-TAATAACATAATAA
* * *
11924342 TAAATCAATAATAACGTAGTAA
1 TAAAT-TATAATAACATAATAA
11924364 TAA
1 TAA
11924367 GTTACGAATA
Statistics
Matches: 57, Mismatches: 6, Indels: 8
0.80 0.08 0.11
Matches are distributed among these distances:
20 15 0.26
21 5 0.09
22 36 0.63
23 1 0.02
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.34
Consensus pattern (21 bp):
TAAATTATAATAACATAATAA
Found at i:11924316 original size:20 final size:21
Alignment explanation
Indices: 11924276--11924332 Score: 66
Period size: 20 Copynumber: 2.8 Consensus size: 21
11924266 AAAATTAAGT
*
11924276 AGTAAATTCATAATAACATAA-A
1 AGTAAATT-AT-ATAATATAATA
11924298 AGTAAATTATATAATATAATA
1 AGTAAATTATATAATATAATA
11924319 A-TAAATTAT-TAATA
1 AGTAAATTATATAATA
11924333 ACTTAATAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
19 5 0.15
20 16 0.48
21 4 0.12
22 8 0.24
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.35
Consensus pattern (21 bp):
AGTAAATTATATAATATAATA
Found at i:11924331 original size:11 final size:11
Alignment explanation
Indices: 11924256--11924355 Score: 68
Period size: 11 Copynumber: 9.3 Consensus size: 11
11924246 AATTTTGTAT
11924256 TAAA-TAATAA
1 TAAATTAATAA
* *
11924266 AAAATTAAGTAG
1 TAAATTAA-TAA
*
11924278 TAAATTCATAA
1 TAAATTAATAA
11924289 TAACA-TAA-AA
1 TAA-ATTAATAA
11924299 GTAAATT-AT-A
1 -TAAATTAATAA
11924309 T-AATATAATAA
1 TAAAT-TAATAA
*
11924320 TAAATTATTAA
1 TAAATTAATAA
*
11924331 TAACTTAATAA
1 TAAATTAATAA
*
11924342 TAAATCAATAA
1 TAAATTAATAA
11924353 TAA
1 TAA
11924356 CGTAGTAATA
Statistics
Matches: 69, Mismatches: 11, Indels: 19
0.70 0.11 0.19
Matches are distributed among these distances:
8 3 0.04
9 2 0.03
10 10 0.14
11 42 0.61
12 12 0.17
ACGTcount: A:0.60, C:0.04, G:0.03, T:0.33
Consensus pattern (11 bp):
TAAATTAATAA
Found at i:11924398 original size:22 final size:22
Alignment explanation
Indices: 11924341--11924412 Score: 63
Period size: 22 Copynumber: 3.3 Consensus size: 22
11924331 TAACTTAATA
** *
11924341 ATAAATCAATAATAACGTAGTA
1 ATAAATCAATAATAATTTAGTT
* * **
11924363 ATAAGTTACGAATAATTTAGTT
1 ATAAATCAATAATAATTTAGTT
*
11924385 ATAAATCAATAATAATTTGGTT
1 ATAAATCAATAATAATTTAGTT
*
11924407 GTAAAT
1 ATAAAT
11924413 TAGTTAATCA
Statistics
Matches: 37, Mismatches: 13, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.47, C:0.06, G:0.11, T:0.36
Consensus pattern (22 bp):
ATAAATCAATAATAATTTAGTT
Found at i:11924616 original size:21 final size:22
Alignment explanation
Indices: 11924565--11924665 Score: 73
Period size: 21 Copynumber: 4.7 Consensus size: 22
11924555 ATAAATTAGT
* **
11924565 ATAA-AAATTATTGATAATTTA
1 ATAATAAATTATTAATAACATA
* * *
11924586 ATAGTAAATTATTAATAGCTTA
1 ATAATAAATTATTAATAACATA
*
11924608 A-AATAAATTATTGATAACATA
1 ATAATAAATTATTAATAACATA
* * *
11924629 ATAATAAATCAAT-ATAACTTA
1 ATAATAAATTATTAATAACATA
**
11924650 ATTGTAAATTATTAAT
1 ATAATAAATTATTAAT
11924666 CTTTTTTTAT
Statistics
Matches: 62, Mismatches: 15, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
21 36 0.58
22 26 0.42
ACGTcount: A:0.51, C:0.04, G:0.05, T:0.40
Consensus pattern (22 bp):
ATAATAAATTATTAATAACATA
Found at i:11925066 original size:23 final size:23
Alignment explanation
Indices: 11925014--11925128 Score: 89
Period size: 22 Copynumber: 5.2 Consensus size: 23
11925004 TTAGTGAAAC
* *
11925014 TTAATAGTAAATCAATT--TTAGT
1 TTAATAGTAAAT-AATTGATAAAT
11925036 TTAATAGTAAATAATTGATAAAT
1 TTAATAGTAAATAATTGATAAAT
* * **
11925059 TTAGTAGTAAATCATAAATAAA-
1 TTAATAGTAAATAATTGATAAAT
11925081 TTAATAGTAAATTAA-TGAT-AAT
1 TTAATAGTAAA-TAATTGATAAAT
* * *
11925103 TTAGTAGTTAATCATTGA-AAAT
1 TTAATAGTAAATAATTGATAAAT
11925125 TTAA
1 TTAA
11925129 AAGTTAATCA
Statistics
Matches: 73, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
21 8 0.11
22 42 0.58
23 23 0.32
ACGTcount: A:0.48, C:0.03, G:0.10, T:0.40
Consensus pattern (23 bp):
TTAATAGTAAATAATTGATAAAT
Found at i:11925091 original size:11 final size:11
Alignment explanation
Indices: 11924978--11925096 Score: 59
Period size: 11 Copynumber: 10.8 Consensus size: 11
11924968 TAATTAGTAA
*
11924978 TAAATTAATAA
1 TAAATTAATAG
* *
11924989 TAACTTCATAG
1 TAAATTAATAG
*
11925000 TAAATTAGT-G
1 TAAATTAATAG
11925010 -AAACTTAATAG
1 TAAA-TTAATAG
* **
11925021 TAAATCAATTT
1 TAAATTAATAG
**
11925032 TAGTTTAATAG
1 TAAATTAATAG
*
11925043 TAAA-TAATTG
1 TAAATTAATAG
*
11925053 ATAAATTTAGTAG
1 -TAAA-TTAATAG
11925066 TAAATCATAA-A-
1 TAAAT--TAATAG
11925077 TAAATTAATAG
1 TAAATTAATAG
11925088 TAAATTAAT
1 TAAATTAAT
11925097 GATAATTTAG
Statistics
Matches: 77, Mismatches: 21, Indels: 20
0.65 0.18 0.17
Matches are distributed among these distances:
9 6 0.08
10 11 0.14
11 46 0.60
12 8 0.10
13 6 0.08
ACGTcount: A:0.50, C:0.04, G:0.08, T:0.38
Consensus pattern (11 bp):
TAAATTAATAG
Found at i:11925091 original size:22 final size:23
Alignment explanation
Indices: 11925035--11925092 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 23
11925025 TCAATTTTAG
**
11925035 TTTAATAGTAAATAATTGATAAA
1 TTTAATAGTAAATAATAAATAAA
* *
11925058 TTTAGTAGTAAATCATAAATAAA
1 TTTAATAGTAAATAATAAATAAA
11925081 -TTAATAGTAAAT
1 TTTAATAGTAAAT
11925093 TAATGATAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 11 0.37
23 19 0.63
ACGTcount: A:0.52, C:0.02, G:0.09, T:0.38
Consensus pattern (23 bp):
TTTAATAGTAAATAATAAATAAA
Found at i:11925101 original size:22 final size:22
Alignment explanation
Indices: 11924912--11925110 Score: 102
Period size: 22 Copynumber: 9.0 Consensus size: 22
11924902 AACATATTAA
* * *
11924912 TAAATTAAGGATAGCTTAATAA
1 TAAATTAATGATAACTTAATAG
* * * *
11924934 AAAATAAATGACAACTTAGTAG
1 TAAATTAATGATAACTTAATAG
* * * *
11924956 TTAATTATTGATTAA-TTAGTAA
1 TAAATTAATGA-TAACTTAATAG
* *
11924978 TAAATTAATAATAACTTCATAG
1 TAAATTAATGATAACTTAATAG
*
11925000 TAAATTAGTGA-AACTTAATAG
1 TAAATTAATGATAACTTAATAG
* ** **
11925021 TAAATCAATTTTAGTTTAATAG
1 TAAATTAATGATAACTTAATAG
* *
11925043 TAAA-TAATTGATAAATTTAGTAG
1 TAAATTAA-TGAT-AACTTAATAG
*
11925066 TAAATCATAA--ATAAATTAATAG
1 TAAAT--TAATGATAACTTAATAG
* *
11925088 TAAATTAATGATAATTTAGTAG
1 TAAATTAATGATAACTTAATAG
11925110 T
1 T
11925111 TAATCATTGA
Statistics
Matches: 130, Mismatches: 37, Indels: 20
0.70 0.20 0.11
Matches are distributed among these distances:
20 3 0.02
21 21 0.16
22 87 0.67
23 16 0.12
26 3 0.02
ACGTcount: A:0.48, C:0.04, G:0.11, T:0.37
Consensus pattern (22 bp):
TAAATTAATGATAACTTAATAG
Found at i:11925125 original size:22 final size:22
Alignment explanation
Indices: 11924996--11925138 Score: 85
Period size: 22 Copynumber: 6.5 Consensus size: 22
11924986 TAATAACTTC
* * *
11924996 ATAGTAAATTAGTG-AAACTTA
1 ATAGTAAATCATTGAAAATTTA
** *
11925017 ATAGTAAATCAATT-TTAGTTTA
1 ATAGTAAATC-ATTGAAAATTTA
*
11925039 ATAGTAAATAATTGATAAATTTA
1 ATAGTAAATCATTGA-AAATTTA
* * *
11925062 GTAGTAAATCA-TAAATAAATTA
1 ATAGTAAATCATTGAA-AATTTA
* * *
11925084 ATAGTAAATTAATGATAATTTA
1 ATAGTAAATCATTGAAAATTTA
* *
11925106 GTAGTTAATCATTGAAAATTTA
1 ATAGTAAATCATTGAAAATTTA
* *
11925128 AAAGTTAATCA
1 ATAGTAAATCA
11925139 ATATAACTTG
Statistics
Matches: 91, Mismatches: 25, Indels: 11
0.72 0.20 0.09
Matches are distributed among these distances:
21 13 0.14
22 62 0.68
23 16 0.18
ACGTcount: A:0.48, C:0.03, G:0.10, T:0.38
Consensus pattern (22 bp):
ATAGTAAATCATTGAAAATTTA
Found at i:11925621 original size:2 final size:2
Alignment explanation
Indices: 11925614--11925641 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
11925604 CCAATTTGTT
11925614 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11925642 AACAACGGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:11927472 original size:22 final size:22
Alignment explanation
Indices: 11927444--11927488 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
11927434 CACTAAGGGC
*
11927444 ACTAACATTGTTTATAGGAAGA
1 ACTAACATTGTTTATAGAAAGA
11927466 ACTAACATTGTTTATAGAAAGA
1 ACTAACATTGTTTATAGAAAGA
11927488 A
1 A
11927489 AATCATACAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.16, T:0.31
Consensus pattern (22 bp):
ACTAACATTGTTTATAGAAAGA
Found at i:11931149 original size:20 final size:20
Alignment explanation
Indices: 11931095--11931149 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 20
11931085 GTGATCAATC
* *
11931095 TAAATATAT-GTATTAATTTT
1 TAAATATATAG-ATTTATTCT
*
11931115 TAAAT-TAATAAATTTATTCT
1 TAAATAT-ATAGATTTATTCT
11931135 TAAATATATAGATTT
1 TAAATATATAGATTT
11931150 TATTAATTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
19 1 0.04
20 26 0.93
21 1 0.04
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.51
Consensus pattern (20 bp):
TAAATATATAGATTTATTCT
Found at i:11931461 original size:39 final size:39
Alignment explanation
Indices: 11931401--11931481 Score: 126
Period size: 39 Copynumber: 2.1 Consensus size: 39
11931391 TACTCTAATT
11931401 AAAATCTGGCTAACAACCACGTGCATAATAAGTATAAAA
1 AAAATCTGGCTAACAACCACGTGCATAATAAGTATAAAA
* * * *
11931440 AAAATCTGGTTAATAATCACGTGCATAATAAGTATTAAA
1 AAAATCTGGCTAACAACCACGTGCATAATAAGTATAAAA
11931479 AAA
1 AAA
11931482 CTAAGTACAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.49, C:0.14, G:0.12, T:0.25
Consensus pattern (39 bp):
AAAATCTGGCTAACAACCACGTGCATAATAAGTATAAAA
Found at i:11932201 original size:22 final size:22
Alignment explanation
Indices: 11932176--11932258 Score: 78
Period size: 22 Copynumber: 3.8 Consensus size: 22
11932166 TTAATCAATT
*
11932176 ATAATTTAATAATAAA-ATATTG
1 ATAATTTAATAATAAATA-AATG
*
11932198 ATAACTTAATAATAAATAAATG
1 ATAATTTAATAATAAATAAATG
* * * *
11932220 ATAATTTAGTAGTCAATAATTG
1 ATAATTTAATAATAAATAAATG
* *
11932242 ATAACTTAGTAATAAAT
1 ATAATTTAATAATAAAT
11932259 TGGTGATACA
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
22 49 0.98
23 1 0.02
ACGTcount: A:0.52, C:0.04, G:0.07, T:0.37
Consensus pattern (22 bp):
ATAATTTAATAATAAATAAATG
Found at i:11932242 original size:44 final size:43
Alignment explanation
Indices: 11932114--11932258 Score: 148
Period size: 44 Copynumber: 3.3 Consensus size: 43
11932104 AATTATTAAA
* * * *
11932114 AACTTAAAAATAAATCAATG-TAATTTAGTAGTTATGATCGAT
1 AACTTAATAATAAATCAATGATAATTTAGTAGTAATAATTGAT
* * * * * * *
11932156 AACTAAATAGTTAATCAATTATAATTTAATAATAAAATATTGAT
1 AACTTAATAATAAATCAATGATAATTTAGTAGTAATA-ATTGAT
*
11932200 AACTTAATAATAAATAAATGATAATTTAGTAGTCAATAATTGAT
1 AACTTAATAATAAATCAATGATAATTTAGTAGT-AATAATTGAT
*
11932244 AACTTAGTAATAAAT
1 AACTTAATAATAAAT
11932259 TGGTGATACA
Statistics
Matches: 80, Mismatches: 20, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
42 15 0.19
43 11 0.14
44 51 0.64
45 3 0.04
ACGTcount: A:0.50, C:0.06, G:0.08, T:0.37
Consensus pattern (43 bp):
AACTTAATAATAAATCAATGATAATTTAGTAGTAATAATTGAT
Found at i:11932363 original size:22 final size:22
Alignment explanation
Indices: 11932338--11932457 Score: 104
Period size: 22 Copynumber: 5.6 Consensus size: 22
11932328 CATAACAACA
* *
11932338 TAATAGTAAATTAAGGATAACT
1 TAATAGTAAATCAATGATAACT
*
11932360 TAATA--AAA--AAGTGATAATT
1 TAATAGTAAATCAA-TGATAACT
* * *
11932379 TAGTAGTTAATCATTGATAACT
1 TAATAGTAAATCAATGATAACT
* * *
11932401 TAGTAATAAATCAATAATAACT
1 TAATAGTAAATCAATGATAACT
* *
11932423 TAATAATATATCAATGATAACT
1 TAATAGTAAATCAATGATAACT
11932445 TAATAGTAAATCA
1 TAATAGTAAATCA
11932458 GTTTAATAGT
Statistics
Matches: 78, Mismatches: 15, Indels: 10
0.76 0.15 0.10
Matches are distributed among these distances:
18 2 0.03
19 10 0.13
20 3 0.04
21 2 0.03
22 60 0.77
23 1 0.01
ACGTcount: A:0.50, C:0.07, G:0.09, T:0.34
Consensus pattern (22 bp):
TAATAGTAAATCAATGATAACT
Found at i:11932704 original size:44 final size:44
Alignment explanation
Indices: 11932645--11932749 Score: 124
Period size: 44 Copynumber: 2.4 Consensus size: 44
11932635 TAAATAAATG
* * *
11932645 ATAACTTTGTGGTAAATGTATAG-TAA-TATAATAGTAAATTACTA
1 ATAACTTAGTAGTAAAT-TATAGATAACT-TAATAGTAAATCACTA
* *
11932689 ATAAGTTAGTAGTAAATTATTGATAACTTAATAGTAAATCACTA
1 ATAACTTAGTAGTAAATTATAGATAACTTAATAGTAAATCACTA
*
11932733 ATAACTTAGTTGTAAAT
1 ATAACTTAGTAGTAAAT
11932750 CAGTTATAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
43 4 0.08
44 47 0.90
45 1 0.02
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.38
Consensus pattern (44 bp):
ATAACTTAGTAGTAAATTATAGATAACTTAATAGTAAATCACTA
Found at i:11932750 original size:22 final size:22
Alignment explanation
Indices: 11932676--11932773 Score: 97
Period size: 22 Copynumber: 4.5 Consensus size: 22
11932666 AGTAATATAA
* *
11932676 TAGTAAATTACTAATAAGTTAG
1 TAGTAAATCACTAATAACTTAG
* * * *
11932698 TAGTAAATTATTGATAACTTAA
1 TAGTAAATCACTAATAACTTAG
11932720 TAGTAAATCACTAATAACTTAG
1 TAGTAAATCACTAATAACTTAG
* * * *
11932742 TTGTAAATCAGTTATAATTTAG
1 TAGTAAATCACTAATAACTTAG
*
11932764 TTGTAAATCA
1 TAGTAAATCA
11932774 ATTAATCATT
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 64 1.00
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.39
Consensus pattern (22 bp):
TAGTAAATCACTAATAACTTAG
Found at i:11932770 original size:44 final size:44
Alignment explanation
Indices: 11932673--11932773 Score: 123
Period size: 44 Copynumber: 2.3 Consensus size: 44
11932663 TATAGTAATA
* * *
11932673 TAATAGTAAATTACTAATAAGTTAGTAGTAAATTATTGATAACT
1 TAATAGTAAATCACTAATAACTTAGTAGTAAATCATTGATAACT
* *
11932717 TAATAGTAAATCACTAATAACTTAGTTGTAAATCAGTT-ATAATT
1 TAATAGTAAATCACTAATAACTTAGTAGTAAATCA-TTGATAACT
* *
11932761 TAGTTGTAAATCA
1 TAATAGTAAATCA
11932774 ATTAATCATT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
44 47 0.96
45 2 0.04
ACGTcount: A:0.44, C:0.07, G:0.11, T:0.39
Consensus pattern (44 bp):
TAATAGTAAATCACTAATAACTTAGTAGTAAATCATTGATAACT
Found at i:11932832 original size:22 final size:22
Alignment explanation
Indices: 11932781--11932823 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
11932771 TCAATTAATC
11932781 ATTGATAACATTATAGTAAATT
1 ATTGATAACATTATAGTAAATT
11932803 ATTGATAA-ATTAGTAGTAAAT
1 ATTGATAACATTA-TAGTAAAT
11932824 CTGTTATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.40
Consensus pattern (22 bp):
ATTGATAACATTATAGTAAATT
Found at i:11932987 original size:96 final size:94
Alignment explanation
Indices: 11932810--11932995 Score: 279
Period size: 96 Copynumber: 2.0 Consensus size: 94
11932800 ATTATTGATA
*
11932810 AATTAGTAGTAAATCTGTTATAATTTTAATATAATCATTAGTAACTTAGTAGTAAATCTTTGTAG
1 AATTAGTAGTAAATCTGTTATAATTTTAATATAATCATTAGTAACTTAGTAGTAAATCTTTATAG
*
11932875 ATTAGTGATAAGATCATTTATAAATCGAT
66 ATTAATGATAAGATCATTTATAAATCGAT
*
11932904 AATTAGTAGTAAAT-TCGTTATAATTTT-ATAATTAAATCATTAGTAACTTAGTAGTTAATCATT
1 AATTAGTAGTAAATCT-GTTATAATTTTAAT-A-T-AATCATTAGTAACTTAGTAGTAAATC-TT
11932967 TATAGATTAATGATAA-ATCATTTATAAAT
61 TATAGATTAATGATAAGATCATTTATAAAT
11932996 TAGTAATAAT
Statistics
Matches: 84, Mismatches: 3, Indels: 8
0.88 0.03 0.08
Matches are distributed among these distances:
93 3 0.04
94 26 0.31
95 1 0.01
96 38 0.45
97 16 0.19
ACGTcount: A:0.41, C:0.06, G:0.11, T:0.42
Consensus pattern (94 bp):
AATTAGTAGTAAATCTGTTATAATTTTAATATAATCATTAGTAACTTAGTAGTAAATCTTTATAG
ATTAATGATAAGATCATTTATAAATCGAT
Found at i:11933004 original size:22 final size:22
Alignment explanation
Indices: 11932936--11933067 Score: 74
Period size: 22 Copynumber: 6.0 Consensus size: 22
11932926 ATTTTATAAT
* *
11932936 TAAATCA-TTAGTAACTTAGTAG
1 TAAATCATTTA-TAAATTAGTAA
* * * *
11932958 TTAATCATTTATAGATTAATGA
1 TAAATCATTTATAAATTAGTAA
11932980 TAAATCATTTATAAATTAGTAA
1 TAAATCATTTATAAATTAGTAA
* * *
11933002 T-AATCAATGATAATTTAGTAA
1 TAAATCATTTATAAATTAGTAA
* * * *
11933023 CAAAT--TGTTATAATTTAATAG
1 TAAATCAT-TTATAAATTAGTAA
* *
11933044 TAAATCATTGATAACTATAGTAA
1 TAAATCATTTATAAAT-TAGTAA
11933067 T
1 T
11933068 CATTTAATAA
Statistics
Matches: 81, Mismatches: 23, Indels: 11
0.70 0.20 0.10
Matches are distributed among these distances:
21 32 0.40
22 40 0.49
23 9 0.11
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.40
Consensus pattern (22 bp):
TAAATCATTTATAAATTAGTAA
Found at i:11933077 original size:20 final size:20
Alignment explanation
Indices: 11933040--11933078 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
11933030 TTATAATTTA
*
11933040 ATAGTAAATCATTGATAACT
1 ATAGTAAATCATTAATAACT
11933060 ATAGT-AATCATTTAATAAC
1 ATAGTAAATCA-TTAATAAC
11933079 ATGGCAGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.36
Consensus pattern (20 bp):
ATAGTAAATCATTAATAACT
Found at i:11933501 original size:22 final size:23
Alignment explanation
Indices: 11933475--11933540 Score: 75
Period size: 22 Copynumber: 3.0 Consensus size: 23
11933465 AGCTTTATCA
11933475 ATAACTTAATAGTTAACTAGT-G
1 ATAACTTAATAGTTAACTAGTAG
*
11933497 ATAACTTAATAG-TAAATCA-TAG
1 ATAACTTAATAGTTAACT-AGTAG
* *
11933519 ATAACTTAGTAGTAAACTAGTA
1 ATAACTTAATAGTTAACTAGTA
11933541 CTTAATAATA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
21 5 0.14
22 26 0.72
23 5 0.14
ACGTcount: A:0.45, C:0.09, G:0.12, T:0.33
Consensus pattern (23 bp):
ATAACTTAATAGTTAACTAGTAG
Found at i:11933593 original size:22 final size:22
Alignment explanation
Indices: 11933568--11933619 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
11933558 GATAATTTTG
* *
11933568 TAGTCAATAATTAATAACT-TAA
1 TAGTAAATAAGTAATAA-TATAA
*
11933590 TAGTAAATCAGTAATAATATAA
1 TAGTAAATAAGTAATAATATAA
11933612 TAGTAAAT
1 TAGTAAAT
11933620 GCATAATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 1 0.04
22 25 0.96
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.35
Consensus pattern (22 bp):
TAGTAAATAAGTAATAATATAA
Found at i:11933626 original size:22 final size:21
Alignment explanation
Indices: 11933579--11933687 Score: 87
Period size: 22 Copynumber: 5.0 Consensus size: 21
11933569 AGTCAATAAT
11933579 TAATAACT-TAATAGTAAATCA
1 TAATAA-TATAATAGTAAATCA
11933600 GTAATAATATAATAGTAAATGCA
1 -TAATAATATAATAGTAAAT-CA
* * *
11933623 TAATAACATAGTAATAAATCAA
1 TAATAATATAATAGTAAATC-A
* * *
11933645 TTATAATATAGTTGTAAATGCA
1 TAATAATATAATAGTAAAT-CA
*
11933667 TAACT-ACATAATAGTAAATCA
1 TAA-TAATATAATAGTAAATCA
11933688 AGGATAACTT
Statistics
Matches: 71, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
21 4 0.06
22 63 0.89
23 4 0.06
ACGTcount: A:0.51, C:0.08, G:0.08, T:0.32
Consensus pattern (21 bp):
TAATAATATAATAGTAAATCA
Found at i:11933627 original size:44 final size:44
Alignment explanation
Indices: 11933579--11933688 Score: 141
Period size: 44 Copynumber: 2.5 Consensus size: 44
11933569 AGTCAATAAT
* *
11933579 TAATAACTTAATAGTAAATCAGTAATAATATAATAGTAAATGCA
1 TAATAACATAATAGTAAATCAATAATAATATAATAGTAAATGCA
* * * * *
11933623 TAATAACATAGTAATAAATCAATTATAATATAGTTGTAAATGCA
1 TAATAACATAATAGTAAATCAATAATAATATAATAGTAAATGCA
11933667 TAACT-ACATAATAGTAAATCAA
1 TAA-TAACATAATAGTAAATCAA
11933689 GGATAACTTT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
44 55 0.98
45 1 0.02
ACGTcount: A:0.52, C:0.08, G:0.08, T:0.32
Consensus pattern (44 bp):
TAATAACATAATAGTAAATCAATAATAATATAATAGTAAATGCA
Found at i:11933840 original size:22 final size:21
Alignment explanation
Indices: 11933815--11933865 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
11933805 TAAATTATAA
*
11933815 ATAATTTAGTGGTAAATAAATG
1 ATAATTTAGT-ATAAATAAATG
* *
11933837 ATAATTTGGTATAAATAATTG
1 ATAATTTAGTATAAATAAATG
11933858 ATAATTTA
1 ATAATTTA
11933866 ATAGTTAATC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
21 16 0.64
22 9 0.36
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (21 bp):
ATAATTTAGTATAAATAAATG
Found at i:11934105 original size:20 final size:20
Alignment explanation
Indices: 11934067--11934124 Score: 82
Period size: 20 Copynumber: 2.9 Consensus size: 20
11934057 AAAAATTAAG
11934067 TAGTAAATTCATGATAATATAA
1 TAGTAAATT-AT-ATAATATAA
11934089 TAGTAAATTATATAATATAA
1 TAGTAAATTATATAATATAA
*
11934109 TACTAAATTAT-TAATA
1 TAGTAAATTATATAATA
11934125 ACTTAATAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
19 5 0.14
20 19 0.54
21 2 0.06
22 9 0.26
ACGTcount: A:0.52, C:0.03, G:0.05, T:0.40
Consensus pattern (20 bp):
TAGTAAATTATATAATATAA
Found at i:11934136 original size:11 final size:11
Alignment explanation
Indices: 11934059--11934147 Score: 51
Period size: 11 Copynumber: 8.2 Consensus size: 11
11934049 AAATAATCAA
*
11934059 AAATTAAGTAGT
1 AAATTAA-TAAT
* *
11934071 AAATTCATGAT
1 AAATTAATAAT
*
11934082 -AATATAATAGT
1 AAAT-TAATAAT
11934093 AAATT-AT-AT
1 AAATTAATAAT
*
11934102 -AATATAATACT
1 AAAT-TAATAAT
*
11934113 AAATTATTAAT
1 AAATTAATAAT
*
11934124 AACTTAATAAT
1 AAATTAATAAT
*
11934135 AAATCAATAAT
1 AAATTAATAAT
11934146 AA
1 AA
11934148 TGAAGTAGTA
Statistics
Matches: 57, Mismatches: 14, Indels: 13
0.68 0.17 0.15
Matches are distributed among these distances:
8 3 0.05
9 2 0.04
10 7 0.12
11 33 0.58
12 12 0.21
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.36
Consensus pattern (11 bp):
AAATTAATAAT
Found at i:11934331 original size:22 final size:21
Alignment explanation
Indices: 11934262--11934331 Score: 52
Period size: 22 Copynumber: 3.2 Consensus size: 21
11934252 CAAATAACTT
*
11934262 ATAACTTT-ATAGTAAATTATTA
1 ATAA-TTTAATAGTAAA-TATTC
* * * *
11934284 ATAATTCAGTGGTAACTATTC
1 ATAATTTAATAGTAAATATTC
11934305 AATAATTTAATAGTAAATCATTC
1 -ATAATTTAATAGTAAAT-ATTC
11934328 ATAA
1 ATAA
11934332 CATAATGATT
Statistics
Matches: 36, Mismatches: 9, Indels: 6
0.71 0.18 0.12
Matches are distributed among these distances:
21 6 0.17
22 26 0.72
23 4 0.11
ACGTcount: A:0.44, C:0.09, G:0.07, T:0.40
Consensus pattern (21 bp):
ATAATTTAATAGTAAATATTC
Found at i:11934410 original size:22 final size:22
Alignment explanation
Indices: 11934360--11934410 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
11934350 GTAAATTAGT
* * *
11934360 ATAA-AAATTATTGATAGCTTA
1 ATAATAAATTATTGACAACATA
11934381 A-AATAAATTATTGACAACATA
1 ATAATAAATTATTGACAACATA
11934402 ATAATAAAT
1 ATAATAAAT
11934411 CCATATAACT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 2 0.08
21 16 0.64
22 7 0.28
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.33
Consensus pattern (22 bp):
ATAATAAATTATTGACAACATA
Found at i:11934746 original size:44 final size:44
Alignment explanation
Indices: 11934697--11934801 Score: 113
Period size: 44 Copynumber: 2.4 Consensus size: 44
11934687 AATTAAGGAT
* * * *
11934697 AGCTTAATAAAAAATAAATGACAACTT-AGTAGTTAATTATTGAT
1 AGCTTAATAATAAATAAATAACAACTTCA-TAGTAAATTATTGAC
* * * *
11934741 TGCTTAGTAATAAATCAATAATAACTTCATAGTAAATTATTGAC
1 AGCTTAATAATAAATAAATAACAACTTCATAGTAAATTATTGAC
*
11934785 AACTTAATAATAAATAA
1 AGCTTAATAATAAATAA
11934802 GTTTTAGTTT
Statistics
Matches: 48, Mismatches: 12, Indels: 2
0.77 0.19 0.03
Matches are distributed among these distances:
44 47 0.98
45 1 0.02
ACGTcount: A:0.49, C:0.09, G:0.09, T:0.34
Consensus pattern (44 bp):
AGCTTAATAATAAATAAATAACAACTTCATAGTAAATTATTGAC
Found at i:11934858 original size:66 final size:65
Alignment explanation
Indices: 11934783--11934939 Score: 149
Period size: 66 Copynumber: 2.4 Consensus size: 65
11934773 TAAATTATTG
** * **
11934783 ACAACTTAATAATAAAT-AAGTTTTAGTTTAATAATAAATAATTGATAAATTTAGTAGTAAATCA
1 ACAACTTAATAATAAATCAA-TGATAATTTAATAATAAATAATTGA-AAATTTAAAAGTAAATCA
11934847 TA
64 TA
* * * * *
11934849 ACAAGTTAATAGTAAATCAATGATAATTTAATAGTTAATAATTGAAAATTTAAAAGTAAATGA-A
1 ACAACTTAATAATAAATCAATGATAATTTAATAATAAATAATTGAAAATTTAAAAGTAAATCATA
* *
11934913 TATAACTTAGTAATAAAT-AATCGATAA
1 -ACAACTTAATAATAAATCAAT-GATAA
11934940 CTTGATAGTT
Statistics
Matches: 74, Mismatches: 14, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
64 4 0.05
65 33 0.45
66 35 0.47
67 2 0.03
ACGTcount: A:0.52, C:0.04, G:0.09, T:0.35
Consensus pattern (65 bp):
ACAACTTAATAATAAATCAATGATAATTTAATAATAAATAATTGAAAATTTAAAAGTAAATCATA
Found at i:11934882 original size:22 final size:21
Alignment explanation
Indices: 11934809--11935007 Score: 114
Period size: 22 Copynumber: 9.0 Consensus size: 21
11934799 TAAGTTTTAG
*
11934809 TTTAATAATAAATAATTGATAAA
1 TTTAATAGTAAATAA-TGAT-AA
* * * *
11934832 TTTAGTAGTAAATCATAACAA
1 TTTAATAGTAAATAATGATAA
*
11934853 GTTAATAGTAAATCAATGATAA
1 TTTAATAGTAAAT-AATGATAA
* *
11934875 TTTAATAGTTAATAATTGAAAA
1 TTTAATAGTAAATAA-TGATAA
*
11934897 TTTAAAAGTAAATGAAT-ATAA
1 TTTAATAGTAAAT-AATGATAA
* * *
11934918 CTTAGTAATAAATAATCGATAA
1 TTTAATAGTAAATAAT-GATAA
* * * *
11934940 CTTGATAGTTAATTAGTGATAA
1 TTTAATAG-TAAATAATGATAA
*
11934962 TTAGTTAATAGTAAATCATGGATAA
1 -T--TTAATAGTAAATAAT-GATAA
*
11934987 TTTAATA-TAAATTAATAATAA
1 TTTAATAGTAAA-TAATGATAA
11935008 CCTGGTAGTG
Statistics
Matches: 133, Mismatches: 32, Indels: 24
0.70 0.17 0.13
Matches are distributed among these distances:
20 3 0.02
21 35 0.26
22 58 0.44
23 20 0.15
24 6 0.05
25 11 0.08
ACGTcount: A:0.50, C:0.04, G:0.10, T:0.37
Consensus pattern (21 bp):
TTTAATAGTAAATAATGATAA
Found at i:11935252 original size:22 final size:22
Alignment explanation
Indices: 11935203--11935253 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
11935193 ATAACATTAC
11935203 AATAAATCACTAATAAGTTAAT
1 AATAAATCACTAATAAGTTAAT
** * * *
11935225 TGTAAATCAGTGATAATTTAAT
1 AATAAATCACTAATAAGTTAAT
11935247 AATAAAT
1 AATAAAT
11935254 TACTTAATCA
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.51, C:0.06, G:0.08, T:0.35
Consensus pattern (22 bp):
AATAAATCACTAATAAGTTAAT
Found at i:11935342 original size:44 final size:44
Alignment explanation
Indices: 11935267--11935437 Score: 116
Period size: 44 Copynumber: 3.9 Consensus size: 44
11935257 TTAATCATTT
* * *
11935267 ATAACTTTGTAATAAATCATT-GTGAAATTAGTAGTAAACTAATC
1 ATAACTTTATAATAAATCATTAAT-AAATTAGTAGTAAAATAATC
* * * * *
11935311 ATAACTTTATAATAAATCATTAATAATTTAGTA-TTAATTTAGC
1 ATAACTTTATAATAAATCATTAATAAATTAGTAGTAAAATAATC
* * * * * *
11935354 AAAATTTTAGTAGTAGATTATTAATAAATTAGTAGTAAAATAAGTG
1 ATAACTTTA-TAATAAATCATTAATAAATTAGTAGTAAAATAA-TC
* * *
11935400 ATAA-TTTAATAGTAAAAT-ATTAATAATTTAATAGTAAA
1 ATAACTTT-ATAAT-AAATCATTAATAAATTAGTAGTAAA
11935438 TCATTTATAT
Statistics
Matches: 99, Mismatches: 22, Indels: 11
0.75 0.17 0.08
Matches are distributed among these distances:
43 13 0.13
44 48 0.48
45 31 0.31
46 7 0.07
ACGTcount: A:0.47, C:0.04, G:0.09, T:0.39
Consensus pattern (44 bp):
ATAACTTTATAATAAATCATTAATAAATTAGTAGTAAAATAATC
Done.