Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15507587
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 82 of 91
Found at i:13816568 original size:77 final size:76
Alignment explanation
Indices: 13816429--13816587 Score: 182
Period size: 77 Copynumber: 2.1 Consensus size: 76
13816419 CTTTCTTTTG
* * *
13816429 TATTTTATGTATTTTATTTATTTATTATTACTATGTATTAATATCTTTATTTATTTATTTATTTA
1 TATTTTATGTATTTTATTTATATATTATTACTATGTATTAATATATTTATTTATGTATTTATTTA
13816494 TTTT-TTATTAA
66 TTTTCTTA-TAA
* **
13816505 TATTTATATGTATTTTATTTATATAGTTA-TA-TATTTATTGTTATATTATAATTTATGTA-TTA
1 TATTT-TATGTATTTTATTTATATA-TTATTACTATGTATTAATATATT-T-ATTTATGTATTTA
*
13816567 TTTTTTTTCTTATAA
62 TTTATTTTCTTATAA
13816582 TATTTT
1 TATTTT
13816588 TTTTGGATTT
Statistics
Matches: 71, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
76 18 0.25
77 39 0.55
78 14 0.20
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (76 bp):
TATTTTATGTATTTTATTTATATATTATTACTATGTATTAATATATTTATTTATGTATTTATTTA
TTTTCTTATAA
Found at i:13817535 original size:6 final size:6
Alignment explanation
Indices: 13817514--13817575 Score: 58
Period size: 6 Copynumber: 10.5 Consensus size: 6
13817504 TTTAATATTC
* * *
13817514 TTTTTA TCTTTA -TTTTA TTTTTA TTTTTTA TTTTT- TACTTT- TCTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA -TTTTTA TTTTTA T-TTTTA TTTTTA
13817561 TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTT
13817576 ATGTTCACTT
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
5 9 0.19
6 33 0.69
7 6 0.12
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:13817548 original size:30 final size:29
Alignment explanation
Indices: 13817514--13817610 Score: 90
Period size: 32 Copynumber: 3.1 Consensus size: 29
13817504 TTTAATATTC
13817514 TTTTTATCTTTAT-TTTATTTTTATTTTTTAT
1 TTTTTA-CTTT-TCTTTATTTTTA-TTTTTAT
13817545 TTTTTACTTTTCTTTATTTTTATTTTTAT
1 TTTTTACTTTTCTTTATTTTTATTTTTAT
*
13817574 TTATGTTCACTTTTATTT-TGTTTTATTATTCTAT
1 TT-T-TT-ACTTTTCTTTAT-TTTTATT-TT-TAT
13817608 TTT
1 TTT
13817611 CTTTAAATAA
Statistics
Matches: 58, Mismatches: 1, Indels: 12
0.82 0.01 0.17
Matches are distributed among these distances:
29 10 0.17
30 15 0.26
31 9 0.16
32 16 0.28
33 3 0.05
34 5 0.09
ACGTcount: A:0.15, C:0.06, G:0.02, T:0.76
Consensus pattern (29 bp):
TTTTTACTTTTCTTTATTTTTATTTTTAT
Found at i:13817772 original size:59 final size:59
Alignment explanation
Indices: 13817625--13818085 Score: 567
Period size: 59 Copynumber: 7.7 Consensus size: 59
13817615 AAATAAAAAT
*
13817625 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAA-TTTC
1 AAAAAAAA-ATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTTC
** * * *
13817684 AAAAAAAGGGGTTTTTGAGGAAAAATTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTTC
1 AAAAAAA--AATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTTC
* *
13817746 -AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAA-TTTC
1 AAAAAAAAATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTTC
* * *
13817803 AAAAAAAAAAAAGGATTTTTGAGGAAAAGTTG-AAGTATCAATTTTCCTTGAAAATCAAAATTTC
1 ----AAAAAAAA--ATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTT
13817867 C
59 C
*
13817868 AAAAAAAAAATATTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTC
1 -AAAAAAAAAT-TTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTTC
* *
13817928 AAAAAAAAAGTTTTTGGGGAAAAATTGAAAGTATCAATTTTCCTTAAAAACAAAA-TTTC
1 AAAAAAAAA-TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTTC
13817987 AAAAAAAAAGTTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTC
1 AAAAAAAAA-TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTTC
*** * *
13818046 AAAAAAGGGTTTTTGGGGAAAAGTTAAAAGTATAAATTTT
1 AAAAAAAAATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
13818086 TTCTACACAA
Statistics
Matches: 353, Mismatches: 31, Indels: 37
0.84 0.07 0.09
Matches are distributed among these distances:
57 4 0.01
58 36 0.10
59 153 0.43
60 50 0.14
61 24 0.07
62 41 0.12
63 22 0.06
64 20 0.06
65 3 0.01
ACGTcount: A:0.47, C:0.07, G:0.13, T:0.33
Consensus pattern (59 bp):
AAAAAAAAATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTTC
Found at i:13819234 original size:28 final size:29
Alignment explanation
Indices: 13819203--13819257 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
13819193 AAGAGTAGGA
* *
13819203 TTAAAATGTTTT-ATGTAATATTTAAATT
1 TTAAAATATTTTAATATAATATTTAAATT
13819231 TTAAAATATTTTAATATAATATTTAAA
1 TTAAAATATTTTAATATAATATTTAAA
13819258 ATTATAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 11 0.46
29 13 0.54
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (29 bp):
TTAAAATATTTTAATATAATATTTAAATT
Found at i:13819273 original size:29 final size:28
Alignment explanation
Indices: 13819202--13819280 Score: 81
Period size: 28 Copynumber: 2.8 Consensus size: 28
13819192 AAAGAGTAGG
*
13819202 ATTAAAATGTTTT-ATGTAATATTTAAAT
1 ATTAAAATATTTTAAT-TAATATTTAAAT
*
13819230 TTTAAAATATTTTAATATAATATTTAAA-
1 ATTAAAATATTTTAAT-TAATATTTAAAT
* *
13819258 ATTATAATTTTATTAATTAATAT
1 ATTAAAATATT-TTAATTAATAT
13819281 GATACGTTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
28 25 0.58
29 18 0.42
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.52
Consensus pattern (28 bp):
ATTAAAATATTTTAATTAATATTTAAAT
Found at i:13821293 original size:12 final size:12
Alignment explanation
Indices: 13821276--13821309 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
13821266 TATCAAAAGC
13821276 ATATACATATAT
1 ATATACATATAT
13821288 ATATACATATAT
1 ATATACATATAT
*
13821300 ATATATATAT
1 ATATACATAT
13821310 GTCGTTCACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (12 bp):
ATATACATATAT
Found at i:13821325 original size:2 final size:2
Alignment explanation
Indices: 13821276--13821309 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
13821266 TATCAAAAGC
* *
13821276 AT AT AC AT AT AT AT AT AC AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13821310 GTCGTTCACT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:13832562 original size:89 final size:90
Alignment explanation
Indices: 13832423--13832594 Score: 294
Period size: 89 Copynumber: 1.9 Consensus size: 90
13832413 TAAATATATA
* *
13832423 TATATATATTCATAGAATTTTTTGGTTTTTTTTCTACATTGATCCAACTAAATTTAAATTAAAAT
1 TATATATATTCATAGAAATTTTTGGTTTTTTTTCTACATTGATCCAACTAAATTTAAATAAAAAT
*
13832488 AAAAATAA-ATAAATAAATAAAAAC
66 AAAAATAATACAAATAAATAAAAAC
13832512 TATATATATTCATAGAAATTTTTGGTTTTTTTTCTACATTGATTCC-ACTAAATTTAAATAAAAA
1 TATATATATTCATAGAAATTTTTGGTTTTTTTTCTACATTGA-TCCAACTAAATTTAAATAAAAA
13832576 TAAAAATAATACAAATAAA
65 TAAAAATAATACAAATAAA
13832595 ATTTAATCTA
Statistics
Matches: 78, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
89 67 0.86
90 11 0.14
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.41
Consensus pattern (90 bp):
TATATATATTCATAGAAATTTTTGGTTTTTTTTCTACATTGATCCAACTAAATTTAAATAAAAAT
AAAAATAATACAAATAAATAAAAAC
Found at i:13836383 original size:2 final size:2
Alignment explanation
Indices: 13836376--13836403 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
13836366 GTTATATGTT
13836376 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13836404 AATAAGGTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:13836948 original size:28 final size:29
Alignment explanation
Indices: 13836917--13836971 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
13836907 AAGAGTTGGA
* *
13836917 TTAAAATGTTTT-ATGTAATATTTAAATT
1 TTAAAATATTTTAATATAATATTTAAATT
13836945 TTAAAATATTTTAATATAATATTTAAA
1 TTAAAATATTTTAATATAATATTTAAA
13836972 ATTATAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 11 0.46
29 13 0.54
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (29 bp):
TTAAAATATTTTAATATAATATTTAAATT
Found at i:13839682 original size:20 final size:21
Alignment explanation
Indices: 13839657--13839708 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 21
13839647 AGGGTGCAAT
*
13839657 AATGGATCTTTAT-TTTGTGC
1 AATGGATCTTTATGTTTGTAC
* *
13839677 AATGGAACTTTTATGTTTGTAT
1 AATGGATC-TTTATGTTTGTAC
13839699 AATGGATCTT
1 AATGGATCTT
13839709 CTTGAATGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 7 0.27
21 7 0.27
22 12 0.46
ACGTcount: A:0.25, C:0.08, G:0.19, T:0.48
Consensus pattern (21 bp):
AATGGATCTTTATGTTTGTAC
Found at i:13844605 original size:22 final size:22
Alignment explanation
Indices: 13844577--13844621 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
13844567 CAAGCAGAGA
13844577 AGAACTTATTTTCCACAAAACT
1 AGAACTTATTTTCCACAAAACT
13844599 AGAACTTATTTTCCACAAAACT
1 AGAACTTATTTTCCACAAAACT
13844621 A
1 A
13844622 AAACCTTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.42, C:0.22, G:0.04, T:0.31
Consensus pattern (22 bp):
AGAACTTATTTTCCACAAAACT
Found at i:13850257 original size:23 final size:22
Alignment explanation
Indices: 13850231--13850279 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
13850221 CCCAAAATGA
13850231 AATTACATATAGTAAAATAAAAG
1 AATT-CATATAGTAAAATAAAAG
**
13850254 AATTTGTATAGTAAAATAAAAG
1 AATTCATATAGTAAAATAAAAG
13850276 AATT
1 AATT
13850280 TGATGAAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 20 0.83
23 4 0.17
ACGTcount: A:0.57, C:0.02, G:0.10, T:0.31
Consensus pattern (22 bp):
AATTCATATAGTAAAATAAAAG
Found at i:13850264 original size:22 final size:22
Alignment explanation
Indices: 13850238--13850281 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
13850228 TGAAATTACA
13850238 TATAGTAAAATAAAAGAATTTG
1 TATAGTAAAATAAAAGAATTTG
13850260 TATAGTAAAATAAAAGAATTTG
1 TATAGTAAAATAAAAGAATTTG
13850282 ATGAAACCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.55, C:0.00, G:0.14, T:0.32
Consensus pattern (22 bp):
TATAGTAAAATAAAAGAATTTG
Found at i:13853518 original size:15 final size:15
Alignment explanation
Indices: 13853498--13853535 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
13853488 ACCCAATTTG
13853498 AATTGTAATTAATTA
1 AATTGTAATTAATTA
13853513 AATTGTAATTAATTA
1 AATTGTAATTAATTA
*
13853528 AATAGTAA
1 AATTGTAA
13853536 ATTGAAGGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (15 bp):
AATTGTAATTAATTA
Found at i:13854543 original size:20 final size:20
Alignment explanation
Indices: 13854485--13854543 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
13854475 CCGGGCCCGA
*
13854485 ATCAATTGGGCCTGACCCGG
1 ATCAATTGGGCCTGACCCAG
13854505 ATCAATTGGGCCTGACCCAG
1 ATCAATTGGGCCTGACCCAG
* *
13854525 ATCATTTGGGCCTGGCCCA
1 ATCAATTGGGCCTGACCCA
13854544 AATGGGCAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.20, C:0.31, G:0.27, T:0.22
Consensus pattern (20 bp):
ATCAATTGGGCCTGACCCAG
Found at i:13855245 original size:31 final size:31
Alignment explanation
Indices: 13855207--13855265 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
13855197 CGGTTGAATT
*
13855207 TTCCGGCCAACCTTGAAGTTTCCGGCGAAAA
1 TTCCGGCCAACATTGAAGTTTCCGGCGAAAA
13855238 TTCCGGCCAACATTGAAGTTTCCGGCGA
1 TTCCGGCCAACATTGAAGTTTCCGGCGA
13855266 CCTGCCCAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.24
Consensus pattern (31 bp):
TTCCGGCCAACATTGAAGTTTCCGGCGAAAA
Found at i:13855361 original size:20 final size:19
Alignment explanation
Indices: 13855319--13855362 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
13855309 CCGGCCAACT
*
13855319 TCCGGCGAAAAACCCAGAT
1 TCCGGCGAAAAACCCAGAA
**
13855338 TCCGGCGAAAATTTCCAGAA
1 TCCGGCGAAAA-ACCCAGAA
13855358 TCCGG
1 TCCGG
13855363 TGAATCTTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.32, C:0.30, G:0.23, T:0.16
Consensus pattern (19 bp):
TCCGGCGAAAAACCCAGAA
Found at i:13855629 original size:14 final size:15
Alignment explanation
Indices: 13855610--13855651 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 15
13855600 CCGAGCCGAG
13855610 CCGAGCCGTTCTTC-
1 CCGAGCCGTTCTTCT
13855624 CCGAGCCG--CTTCT
1 CCGAGCCGTTCTTCT
13855637 CCGAGCCGTT-TTCT
1 CCGAGCCGTTCTTCT
13855651 C
1 C
13855652 TTCCTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 4 0.16
13 8 0.32
14 13 0.52
ACGTcount: A:0.07, C:0.43, G:0.21, T:0.29
Consensus pattern (15 bp):
CCGAGCCGTTCTTCT
Found at i:13855642 original size:13 final size:14
Alignment explanation
Indices: 13855610--13855646 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
13855600 CCGAGCCGAG
13855610 CCGAGCCGTTCTTC
1 CCGAGCCGTTCTTC
13855624 CCGAGCCG--CTTC
1 CCGAGCCGTTCTTC
13855636 TCCGAGCCGTT
1 -CCGAGCCGTT
13855647 TTCTCTTCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
12 4 0.20
13 8 0.40
14 8 0.40
ACGTcount: A:0.08, C:0.43, G:0.24, T:0.24
Consensus pattern (14 bp):
CCGAGCCGTTCTTC
Found at i:13855732 original size:17 final size:16
Alignment explanation
Indices: 13855698--13855777 Score: 56
Period size: 17 Copynumber: 4.9 Consensus size: 16
13855688 CCGCTCCAGG
13855698 TTTTTTTTTTTTTT--
1 TTTTTTTTTTTTTTGA
13855712 TTTTTTTTTTTTTTGAA
1 TTTTTTTTTTTTTTG-A
* *
13855729 TTTTTTCTTTATTTGA
1 TTTTTTTTTTTTTTGA
* ** *
13855745 CTTTGATTTTGATCTTGA
1 -TTT-TTTTTTTTTTTGA
13855763 TTTTTTTTTTCTTTT
1 TTTTTTTTTT-TTTT
13855778 TTCTTTAATT
Statistics
Matches: 48, Mismatches: 12, Indels: 9
0.70 0.17 0.13
Matches are distributed among these distances:
14 14 0.29
16 5 0.10
17 22 0.46
18 7 0.15
ACGTcount: A:0.09, C:0.05, G:0.06, T:0.80
Consensus pattern (16 bp):
TTTTTTTTTTTTTTGA
Found at i:13855734 original size:1 final size:1
Alignment explanation
Indices: 13855698--13855725 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
13855688 CCGCTCCAGG
13855698 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
13855726 GAATTTTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:13855935 original size:156 final size:156
Alignment explanation
Indices: 13855775--13856077 Score: 534
Period size: 156 Copynumber: 1.9 Consensus size: 156
13855765 TTTTTTTTCT
*
13855775 TTTTTCTTTAATTAATCCGACGACGGAGCCTCTACAAGTGAAACAGTAGTTTTTCTTGCATACTC
1 TTTTTCTTTAAATAATCCGACGACGGAGCCTCTACAAGTGAAACAGTAGTTTTTCTTGCATACTC
* *
13855840 CTGAGGTGAGGGAATTTTTTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCG
66 CTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCA
* *
13855905 ATAATTAATTAATTGGTTGATCTTGA
131 ACAATTAACTAATTGGTTGATCTTGA
* *
13855931 TTTTTCTTTAAATAATCCGACGATGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
1 TTTTTCTTTAAATAATCCGACGACGGAGCCTCTACAAGTGAAACAGTAGTTTTTCTTGCATACTC
13855996 CTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCA
66 CTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCA
*
13856061 ACAATTAACTACTTGGT
131 ACAATTAACTAATTGGT
13856078 AAAATTTTAA
Statistics
Matches: 139, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
156 139 1.00
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.38
Consensus pattern (156 bp):
TTTTTCTTTAAATAATCCGACGACGGAGCCTCTACAAGTGAAACAGTAGTTTTTCTTGCATACTC
CTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCA
ACAATTAACTAATTGGTTGATCTTGA
Found at i:13858777 original size:23 final size:23
Alignment explanation
Indices: 13858744--13858793 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
13858734 CTTTATGAGG
13858744 AATGATAATGAAATCTTCATGGC
1 AATGATAATGAAATCTTCATGGC
*
13858767 AATGATGATGAAATCTTCATGGC
1 AATGATAATGAAATCTTCATGGC
13858790 AATG
1 AATG
13858794 CTGAAATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (23 bp):
AATGATAATGAAATCTTCATGGC
Found at i:13859160 original size:22 final size:22
Alignment explanation
Indices: 13859132--13859174 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
13859122 CAAGCAGAGA
13859132 AGAACTTATTTTCCACAAAACC
1 AGAACTTATTTTCCACAAAACC
13859154 AGAACTTATTTTCCACAAAAC
1 AGAACTTATTTTCCACAAAAC
13859175 TAAAACCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.42, C:0.26, G:0.05, T:0.28
Consensus pattern (22 bp):
AGAACTTATTTTCCACAAAACC
Found at i:13859909 original size:2 final size:2
Alignment explanation
Indices: 13859897--13859933 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
13859887 AGAATCTATG
*
13859897 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
13859934 GAATTTCATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:13860542 original size:24 final size:24
Alignment explanation
Indices: 13860513--13860573 Score: 61
Period size: 25 Copynumber: 2.5 Consensus size: 24
13860503 TATTGAAAGC
13860513 AAAATAGATTTTC-TTTAAAAACAA
1 AAAATA-ATTTTCATTTAAAAACAA
* **
13860537 AAAATAAATTTGCATTTAAATTCAA
1 AAAAT-AATTTTCATTTAAAAACAA
13860562 ATAAATAATTTT
1 A-AAATAATTTT
13860574 TAAAAATATA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
24 10 0.33
25 16 0.53
26 4 0.13
ACGTcount: A:0.52, C:0.07, G:0.03, T:0.38
Consensus pattern (24 bp):
AAAATAATTTTCATTTAAAAACAA
Found at i:13861204 original size:24 final size:24
Alignment explanation
Indices: 13861132--13861204 Score: 60
Period size: 24 Copynumber: 3.0 Consensus size: 24
13861122 TACTTATTTC
* *
13861132 AATTAAATTTGTTATTAAAATGTTAA
1 AATTAAATTT-TAATTAAAAT-ATAA
* *
13861158 AA--ATATTTTATATTAATATTATAA
1 AATTAAATTTTA-ATTAA-AATATAA
13861182 AATTAAATTTTAATTAAAATATA
1 AATTAAATTTTAATTAAAATATA
13861205 TTATTTATTA
Statistics
Matches: 37, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
23 1 0.03
24 20 0.54
25 7 0.19
26 9 0.24
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.47
Consensus pattern (24 bp):
AATTAAATTTTAATTAAAATATAA
Found at i:13861335 original size:20 final size:20
Alignment explanation
Indices: 13861310--13861350 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
13861300 AGTAGTTGGG
13861310 TTTAGCAAGTACTCTAGCTA
1 TTTAGCAAGTACTCTAGCTA
13861330 TTTAGCAAGTACTCTAGCTA
1 TTTAGCAAGTACTCTAGCTA
13861350 T
1 T
13861351 AACAACTAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.37
Consensus pattern (20 bp):
TTTAGCAAGTACTCTAGCTA
Found at i:13870583 original size:25 final size:25
Alignment explanation
Indices: 13870528--13870588 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
13870518 GATTAAAAGT
*
13870528 AAATATCAAATTAATTAATAAATTTA
1 AAAT-TCAAATTAATTAAAAAATTTA
* *
13870554 TAATTTAAATT-ATTAAAAAATTATA
1 AAATTCAAATTAATTAAAAAATT-TA
13870579 AAATTCAAAT
1 AAATTCAAAT
13870589 ATTTAGTTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
24 10 0.34
25 16 0.55
26 3 0.10
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.39
Consensus pattern (25 bp):
AAATTCAAATTAATTAAAAAATTTA
Found at i:13870781 original size:54 final size:53
Alignment explanation
Indices: 13870716--13870894 Score: 160
Period size: 51 Copynumber: 3.4 Consensus size: 53
13870706 TATTTTGCCT
*
13870716 TCATACCATAATTAAAAAATATCCTTTTCTTTTATAATTATTTACTATAATACTC
1 TCATACCATAATTAAAAAATATCC-TTTCTCTTATAATTATTTA-TATAATACTC
* *
13870771 -CATATCATAATTATAGAAAAT-T-C-TTCTCTTA-AATTAATTAT-T-ATACTC
1 TCATACCATAATTA-A-AAAATATCCTTTCTCTTATAATTATTTATATAATACTC
* *
13870819 TCATACCATAA-TAAAAAAAATACATATTCTCTTATAATTATTTATTATAATA-TCC
1 TCATACCATAATTAAAAAATAT-CCT-TTCTCTTATAATTATTTA-TATAATACT-C
*
13870874 TCGTACCATAATTATAAAAAT
1 TCATACCATAATTA-AAAAAT
13870895 GTTCTTTTAT
Statistics
Matches: 100, Mismatches: 9, Indels: 28
0.73 0.07 0.20
Matches are distributed among these distances:
46 4 0.04
47 2 0.02
48 8 0.08
49 10 0.10
50 1 0.01
51 16 0.16
52 15 0.15
53 1 0.01
54 15 0.15
55 16 0.16
56 7 0.07
57 5 0.05
ACGTcount: A:0.42, C:0.15, G:0.01, T:0.42
Consensus pattern (53 bp):
TCATACCATAATTAAAAAATATCCTTTCTCTTATAATTATTTATATAATACTC
Found at i:13870839 original size:48 final size:50
Alignment explanation
Indices: 13870717--13870867 Score: 128
Period size: 52 Copynumber: 2.9 Consensus size: 50
13870707 ATTTTGCCTT
* * * * *
13870717 CATACCATAATTAAAAAATATCCTTTTCTTTTATAATTATTTACTATAATACTC
1 CATACCATAATTAAAAAAAAT-ATATTCTCTTATAATTAATTA-T-T-ATACTC
* * * *
13870771 CATATCATAATTATAGAAAAT-TCTTCTCTTA-AATTAATTATTATACTC
1 CATACCATAATTAAAAAAAATATATTCTCTTATAATTAATTATTATACTC
*
13870819 TCATACCATAA-TAAAAAAAATACATATTCTCTTATAATTATTTATTATA
1 -CATACCATAATTAAAAAAAAT--ATATTCTCTTATAATTAATTATTATA
13870868 ATATCCTCGT
Statistics
Matches: 80, Mismatches: 12, Indels: 12
0.77 0.12 0.12
Matches are distributed among these distances:
48 14 0.17
49 10 0.12
50 1 0.01
51 17 0.21
52 21 0.26
54 17 0.21
ACGTcount: A:0.42, C:0.15, G:0.01, T:0.43
Consensus pattern (50 bp):
CATACCATAATTAAAAAAAATATATTCTCTTATAATTAATTATTATACTC
Found at i:13870866 original size:55 final size:54
Alignment explanation
Indices: 13870716--13870894 Score: 149
Period size: 55 Copynumber: 3.4 Consensus size: 54
13870706 TATTTTGCCT
* * * * *
13870716 TCATACCATAATTAAAAAATATCCTTTTCTTTTATAATTATTTACTATAATACTC
1 TCATACCATAA-TAAAAAAAATACTATTCTCTTATAATTATTTATTATAATACTC
* * * * *
13870771 -CATATCATAATTATAGAAAAT--TCTTCTCTTA-AATTA---ATTATTATACTC
1 TCATACCATAA-TAAAAAAAATACTATTCTCTTATAATTATTTATTATAATACTC
13870819 TCATACCATAATAAAAAAAATACATATTCTCTTATAATTATTTATTATAATA-TCC
1 TCATACCATAATAAAAAAAATAC-TATTCTCTTATAATTATTTATTATAATACT-C
* * *
13870874 TCGTACCATAATTATAAAAAT
1 TCATACCATAATAAAAAAAAT
13870895 GTTCTTTTAT
Statistics
Matches: 99, Mismatches: 16, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
48 18 0.18
49 9 0.09
51 14 0.14
52 13 0.13
54 18 0.18
55 27 0.27
ACGTcount: A:0.42, C:0.15, G:0.01, T:0.42
Consensus pattern (54 bp):
TCATACCATAATAAAAAAAATACTATTCTCTTATAATTATTTATTATAATACTC
Found at i:13871029 original size:58 final size:59
Alignment explanation
Indices: 13870910--13871039 Score: 160
Period size: 58 Copynumber: 2.2 Consensus size: 59
13870900 TTTATTATTA
* * *
13870910 AATTACAAAAATACAATTCTCTTATTATTGACTCAAATTACTATAATACCTTCCTGACAT
1 AATTACAAAAATACAATTCTCTCATAATTGACTCAAATTACTATAATACCTT-CTCACAT
*
13870970 AATTATAAAAATAC-ATT-TCTCATAATTGA-TCAAAATTACTATAATACTCTT-TCACCAT
1 AATTACAAAAATACAATTCTCTCATAATTGACTC-AAATTACTATAATAC-CTTCTCA-CAT
13871028 AATTACAAAAAT
1 AATTACAAAAAT
13871040 GTTTTTATGA
Statistics
Matches: 62, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
57 4 0.06
58 39 0.63
59 6 0.10
60 13 0.21
ACGTcount: A:0.44, C:0.18, G:0.02, T:0.36
Consensus pattern (59 bp):
AATTACAAAAATACAATTCTCTCATAATTGACTCAAATTACTATAATACCTTCTCACAT
Found at i:13871644 original size:129 final size:128
Alignment explanation
Indices: 13871414--13871718 Score: 339
Period size: 129 Copynumber: 2.4 Consensus size: 128
13871404 TAAGAAGTTA
* * * * * *
13871414 ACATGTGGTATTTTGTTTCAAAATTACTATAACACATCTATTAAATTATATATTAATTTTTAACT
1 ACATGTGATATTTTGTTT-AAAATTACTATAATACATCTATTAAATTACATATGAAATTTTAACA
* * * *
13871479 TAATATAAAATTAATCACATATTAAAGTATTAAAATATCATT-ACAATTGGTTTATAAAAATTTG
65 TAATATAAAATTAATCACATACTAAAGTACTAAAATA-CATTGACAATTGCTTAATAAAAATTTG
*
13871543 ACATGTGATATTTTATTTAAAAATTACTATAATATCAT-TATTAAATTACATATGAAATTTTAAC
1 ACATGTGATATTTTGTTT-AAAATTACTATAATA-CATCTATTAAATTACATATGAAATTTTAAC
* * * * **
13871607 ATCATATAAAATTAA-CTACATACTAAATTACTAAAATACCTTGGCCGTTGCTTAATAAAAATTT
64 ATAATATAAAATTAATC-ACATACTAAAGTACTAAAATACATTGACAATTGCTTAATAAAAATTT
13871671 G
128 G
* * *
13871672 ACATGTGAAATTTTGTTTTAAATTCACTATAATA-ACCCTATTAAATT
1 ACATGTGATATTTTGTTTAAAATT-ACTATAATACA-TCTATTAAATT
13871719 CTTATTAAAT
Statistics
Matches: 148, Mismatches: 22, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
127 1 0.01
128 9 0.06
129 135 0.91
130 3 0.02
ACGTcount: A:0.42, C:0.10, G:0.06, T:0.41
Consensus pattern (128 bp):
ACATGTGATATTTTGTTTAAAATTACTATAATACATCTATTAAATTACATATGAAATTTTAACAT
AATATAAAATTAATCACATACTAAAGTACTAAAATACATTGACAATTGCTTAATAAAAATTTG
Found at i:13878429 original size:14 final size:15
Alignment explanation
Indices: 13878401--13878431 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
13878391 GTTGACAATT
13878401 AAGTGAAGACACCAG
1 AAGTGAAGACACCAG
13878416 AAGTGAAGAC-CCAG
1 AAGTGAAGACACCAG
13878430 AA
1 AA
13878432 ATCTATTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.48, C:0.19, G:0.26, T:0.06
Consensus pattern (15 bp):
AAGTGAAGACACCAG
Found at i:13880017 original size:22 final size:21
Alignment explanation
Indices: 13879974--13880025 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
13879964 CTTAAAATTA
*
13879974 ATAAAATATTATTTTTTTAAT
1 ATAAAATATTATTTTTTAAAT
13879995 ATAAAATATTATTTTTTGAAAT
1 ATAAAATATTATTTTTT-AAAT
13880017 AT-AAATATT
1 ATAAAATATT
13880026 TAAATATATA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 24 0.83
22 5 0.17
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (21 bp):
ATAAAATATTATTTTTTAAAT
Found at i:13880031 original size:8 final size:8
Alignment explanation
Indices: 13880015--13880051 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
13880005 ATTTTTTGAA
13880015 ATATAAAT
1 ATATAAAT
*
13880023 ATTTAAAT
1 ATATAAAT
*
13880031 ATATAATT
1 ATATAAAT
13880039 ATATAAAT
1 ATATAAAT
13880047 ATATA
1 ATATA
13880052 TAAATAAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (8 bp):
ATATAAAT
Found at i:13880064 original size:26 final size:24
Alignment explanation
Indices: 13880015--13880079 Score: 67
Period size: 26 Copynumber: 2.6 Consensus size: 24
13880005 ATTTTTTGAA
* *
13880015 ATATAAATATTTAAATATATAATT
1 ATATAAATATTTAAATAAAAAATT
13880039 ATATAAATATATATAAATAAAAAATT
1 ATATAAATAT-T-TAAATAAAAAATT
* * *
13880065 AAATAATTAATTAAA
1 ATATAAATATTTAAA
13880080 AATAATTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
24 14 0.41
25 2 0.06
26 18 0.53
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (24 bp):
ATATAAATATTTAAATAAAAAATT
Found at i:13884606 original size:20 final size:21
Alignment explanation
Indices: 13884581--13884632 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 21
13884571 AGGGCACAAT
13884581 AATGGATCTTTA-CTTTGTAC
1 AATGGATCTTTATCTTTGTAC
* * *
13884601 AATGGAACTTTTATGTTTGTAT
1 AATGGATC-TTTATCTTTGTAC
13884623 AATGGATCTT
1 AATGGATCTT
13884633 CTTGAATGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 7 0.27
21 6 0.23
22 13 0.50
ACGTcount: A:0.27, C:0.10, G:0.17, T:0.46
Consensus pattern (21 bp):
AATGGATCTTTATCTTTGTAC
Found at i:13890005 original size:6 final size:6
Alignment explanation
Indices: 13889975--13890037 Score: 54
Period size: 6 Copynumber: 10.0 Consensus size: 6
13889965 CCACCTTCAT
* * * *
13889975 CACCCC CACCCC CACCTC CATCATCTC CATCTC CACCTC CACCTC CACTTC
1 CACCTC CACCTC CACCTC CA-C--CTC CACCTC CACCTC CACCTC CACCTC
*
13890026 CACCTC CTCCTC
1 CACCTC CACCTC
13890038 TACCAACACA
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
6 42 0.88
7 1 0.02
9 5 0.10
ACGTcount: A:0.16, C:0.63, G:0.00, T:0.21
Consensus pattern (6 bp):
CACCTC
Found at i:13894125 original size:12 final size:12
Alignment explanation
Indices: 13894110--13894134 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
13894100 ACACACACAC
13894110 ACACACATAGAT
1 ACACACATAGAT
13894122 ACACACATAGAT
1 ACACACATAGAT
13894134 A
1 A
13894135 TCAAAACACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.24, G:0.08, T:0.16
Consensus pattern (12 bp):
ACACACATAGAT
Found at i:13894681 original size:14 final size:14
Alignment explanation
Indices: 13894662--13894690 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
13894652 TCACCAAAAG
13894662 AAAGTTAAGAATTA
1 AAAGTTAAGAATTA
13894676 AAAGTTAAGAATTA
1 AAAGTTAAGAATTA
13894690 A
1 A
13894691 GATGATGATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.14, T:0.28
Consensus pattern (14 bp):
AAAGTTAAGAATTA
Found at i:13895239 original size:18 final size:20
Alignment explanation
Indices: 13895191--13895239 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 20
13895181 AATTATAATT
*
13895191 TTATTATCTAATATGGTACA
1 TTATTATTTAATATGGTACA
*
13895211 TTATT-TGTTAAT-T-GTATA
1 TTATTAT-TTAATATGGTACA
13895229 TTATTATTTAA
1 TTATTATTTAA
13895240 ACTTATAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
18 13 0.52
19 3 0.12
20 9 0.36
ACGTcount: A:0.33, C:0.04, G:0.08, T:0.55
Consensus pattern (20 bp):
TTATTATTTAATATGGTACA
Found at i:13901649 original size:21 final size:21
Alignment explanation
Indices: 13901624--13901663 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
13901614 AGATATCAAA
*
13901624 TAAATTAATAAATTTTTAATT
1 TAAATTAATAAAATTTTAATT
*
13901645 TAAATTATTAAAATTTTAA
1 TAAATTAATAAAATTTTAA
13901664 AAATTTCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
TAAATTAATAAAATTTTAATT
Found at i:13902706 original size:341 final size:337
Alignment explanation
Indices: 13902111--13902755 Score: 987
Period size: 341 Copynumber: 1.9 Consensus size: 337
13902101 CCATAATTAC
*
13902111 GAAAATGATTTTATGAATACTTAATAAGAAGTTGACATGTGATACTTTTGTTTCAAAATTAATAA
1 GAAAATGATTTTATGAATACTTAATAAAAAGTTGACATGTGATACTTTTGTTTCAAAATTAATAA
* *
13902176 CATATATTAAAACAATCCTTTGATAGTTACTATAATAGCCTTTTGTTTATTTGATATCGATGTGT
66 CATATATTAAAACAATCCTTTGATAGTTACTATAATAACCTTTTGTTTATTTGATATCGATATGT
* * * *
13902241 GTTCAAATTTACTATAATACTTTTTATCATAATTACAAAATACTTATTTTTTTATAATTAATTAA
131 GTTCAAATTTACTACAATACTTTTTACCATAATTACAAAATACTTATCTTCTTATAATTAATTAA
* *
13902306 ATTATTATAATACCTTCTTACAATAATTACAAAATATCCCTCAAAGTATAATTGACT-AAATTAC
196 ATTATTATAATACCCTCTTACAATAATTACAAAATACCCCTCAAAGTATAATTGACTAAAATTAC
* *
13902370 A-AAAATATCTTTCCTACAAAAATTATAAAAATACC-CTTACCATAATTGGCAAAAATTTACTAT
261 AGAAAA-ATCTATCCTACAAAAATTACAAAAATACCTC-TACCATAATTGGCAAAAATTTACTAT
13902433 AATGCATCTCATAT
324 AATGCATCTCATAT
* *
13902447 GAAAATGCTTTTATGAGTACTTAATAAAAAGTTGACATGTGATAC-TTTGTTTCAAAATTAATAA
1 GAAAATGATTTTATGAATACTTAATAAAAAGTTGACATGTGATACTTTTGTTTCAAAATTAATAA
* *
13902511 CATATATTAAAACAATTCTTTGATAGTTACTATGATAA-CTCTTTGTTTATTTGATATGATATCG
66 CATATATTAAAACAATCCTTTGATAGTTACTATAATAACCT-TTTGTTTA--T--T-TGATATCG
* *
13902575 ATATGTGTTTAAATTTACTACAATATTTTTTTACCATAATTACAAAATACTTATCTTCTTATAAT
125 ATATGTGTTCAAATTTACTACAATA-CTTTTTACCATAATTACAAAATACTTATCTTCTTATAAT
*
13902640 TAATTAAAATTATTATAATACCCTCTT-CAATAATTACAAAATACCCCTCATAGTATAATTGACT
189 TAATT-AAATTATTATAATACCCTCTTACAATAATTACAAAATACCCCTCAAAGTATAATTGACT
*
13902704 AAAATTACAGAAAAATCTATCCTATAAAAATTACAAAAATACCTCTACCATA
253 AAAATTACAGAAAAATCTATCCTACAAAAATTACAAAAATACCTCTACCATA
13902756 TTACTATAAT
Statistics
Matches: 279, Mismatches: 19, Indels: 16
0.89 0.06 0.05
Matches are distributed among these distances:
334 2 0.01
335 62 0.22
336 42 0.15
337 1 0.00
339 1 0.00
340 30 0.11
341 75 0.27
342 61 0.22
343 5 0.02
ACGTcount: A:0.41, C:0.13, G:0.07, T:0.39
Consensus pattern (337 bp):
GAAAATGATTTTATGAATACTTAATAAAAAGTTGACATGTGATACTTTTGTTTCAAAATTAATAA
CATATATTAAAACAATCCTTTGATAGTTACTATAATAACCTTTTGTTTATTTGATATCGATATGT
GTTCAAATTTACTACAATACTTTTTACCATAATTACAAAATACTTATCTTCTTATAATTAATTAA
ATTATTATAATACCCTCTTACAATAATTACAAAATACCCCTCAAAGTATAATTGACTAAAATTAC
AGAAAAATCTATCCTACAAAAATTACAAAAATACCTCTACCATAATTGGCAAAAATTTACTATAA
TGCATCTCATAT
Found at i:13902857 original size:22 final size:22
Alignment explanation
Indices: 13902831--13902872 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
13902821 TTTTGTTTCA
13902831 AAATTACTATAAT-ATTTTTATT
1 AAATTA-TATAATAATTTTTATT
*
13902853 AAATTATATATTAATTTTTA
1 AAATTATATAATAATTTTTA
13902873 ATATAATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (22 bp):
AAATTATATAATAATTTTTATT
Found at i:13903041 original size:129 final size:126
Alignment explanation
Indices: 13902794--13903139 Score: 365
Period size: 129 Copynumber: 2.7 Consensus size: 126
13902784 CTTTTATGAG
* * *
13902794 TACTTCATAAGAAA-TTAACATGT-AACATTTTGTTTCAAAATTACTATAATATTTTTATTAAAT
1 TACTTCATAA-AAATTTGACATGTGAA-ATTTTGTTT-AAAATTACTATAATA-CTCTATTAAAT
* * * *
13902857 TATATATTAATTTTTAATATAATATAAAATTAACCACATATTAAATTATTAAAATATCATT-ACA
62 TACATATTAAATTTTAA-ATAATATAAAATTAACCACATACTAAATTATCAAAATATCATTGAC-
13902921 AT
125 AT
** * * * *
13902923 TGGTTTATGAAAATTTGACATGTGATATTTTATTTAAAAATTACTATAATACTACTATTAAATTA
1 TACTTCATAAAAATTTGACATGTGAAATTTTGTTT-AAAATTACTATAATACT-CTATTAAATTA
* * * * * *
13902988 CATATGAAATTTTAACATCATATAAAATTAACTACATACTAAATTATCAAAATATCGTTGTCGT
64 CATATTAAATTTTAA-ATAATATAAAATTAACCACATACTAAATTATCAAAATATCATTGACAT
* *
13903052 TACTTCATAAAAATTTGACATGTGAAATTTTGTTTGAAATTCACTATAATAGTCTAATTAAATTA
1 TACTTCATAAAAATTTGACATGTGAAATTTTGTTTAAAATT-ACTATAATACTCT-ATTAAATTA
* *
13903117 CTTATTAAATGTTAAATAATATA
64 CATATTAAATTTTAAATAATATA
13903140 TACTGAAATA
Statistics
Matches: 178, Mismatches: 33, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
128 18 0.10
129 158 0.89
130 2 0.01
ACGTcount: A:0.43, C:0.09, G:0.06, T:0.42
Consensus pattern (126 bp):
TACTTCATAAAAATTTGACATGTGAAATTTTGTTTAAAATTACTATAATACTCTATTAAATTACA
TATTAAATTTTAAATAATATAAAATTAACCACATACTAAATTATCAAAATATCATTGACAT
Found at i:13903708 original size:33 final size:31
Alignment explanation
Indices: 13903668--13903729 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 31
13903658 TCAAATAAAC
13903668 TAAATAATTATAAT-TTTATTAAAATAAAAAAAT
1 TAAATAATT-TAATATTTA--AAAATAAAAAAAT
*
13903701 TAAATAATTTTATATTTAAAAATAAAAAA
1 TAAATAATTTAATATTTAAAAATAAAAAA
13903730 TATTTAATCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
31 11 0.41
32 3 0.11
33 13 0.48
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (31 bp):
TAAATAATTTAATATTTAAAAATAAAAAAAT
Found at i:13906669 original size:20 final size:21
Alignment explanation
Indices: 13906644--13906695 Score: 70
Period size: 22 Copynumber: 2.5 Consensus size: 21
13906634 AGGGCACAAT
13906644 AATGGATCTTTAT-TTTGTAA
1 AATGGATCTTTATGTTTGTAA
* *
13906664 AATGGAACTTTTATGTTTGTAT
1 AATGGATC-TTTATGTTTGTAA
13906686 AATGGATCTT
1 AATGGATCTT
13906696 CTTGAATGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 7 0.26
21 7 0.26
22 13 0.48
ACGTcount: A:0.29, C:0.06, G:0.17, T:0.48
Consensus pattern (21 bp):
AATGGATCTTTATGTTTGTAA
Found at i:13910519 original size:14 final size:14
Alignment explanation
Indices: 13910500--13910528 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
13910490 AATTTATTTG
13910500 GTGCAGGCAATTAA
1 GTGCAGGCAATTAA
13910514 GTGCAGGCAATTAA
1 GTGCAGGCAATTAA
13910528 G
1 G
13910529 AAAAAATGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.14, G:0.31, T:0.21
Consensus pattern (14 bp):
GTGCAGGCAATTAA
Found at i:13912090 original size:6 final size:6
Alignment explanation
Indices: 13912060--13912129 Score: 68
Period size: 6 Copynumber: 11.2 Consensus size: 6
13912050 CCACCTTCAT
* * * *
13912060 CACCCC CACCCC CACCTC CATCATCTC CATCTC CACCTC CACCTC CACTTC
1 CACCTC CACCTC CACCTC CA-C--CTC CACCTC CACCTC CACCTC CACCTC
*
13912111 CACCTC CACTTC CACCTC C
1 CACCTC CACCTC CACCTC C
13912130 TCTACCAACA
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
6 48 0.89
7 1 0.02
9 5 0.09
ACGTcount: A:0.17, C:0.63, G:0.00, T:0.20
Consensus pattern (6 bp):
CACCTC
Found at i:13912305 original size:22 final size:22
Alignment explanation
Indices: 13912277--13912320 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
13912267 CTAAATCTTC
*
13912277 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
13912299 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
13912321 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:13916002 original size:25 final size:23
Alignment explanation
Indices: 13915968--13916062 Score: 111
Period size: 23 Copynumber: 4.1 Consensus size: 23
13915958 TTTGAAAGGG
*
13915968 TTCGGCAATGAAGGCCTAAACAGGA
1 TTCGGCAATGAAGGCCTAAA-A-AA
*
13915993 TTCGGCAATGAAAGCCTAAAAAA
1 TTCGGCAATGAAGGCCTAAAAAA
*
13916016 GTCGGCAATGAAGGCCTAAAAAA
1 TTCGGCAATGAAGGCCTAAAAAA
* * *
13916039 GTCAGCAATGAAGG-CTGAAAAA
1 TTCGGCAATGAAGGCCTAAAAAA
13916061 TT
1 TT
13916063 TTTCTTCCCA
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
22 8 0.13
23 35 0.56
24 1 0.02
25 19 0.30
ACGTcount: A:0.42, C:0.17, G:0.24, T:0.17
Consensus pattern (23 bp):
TTCGGCAATGAAGGCCTAAAAAA
Found at i:13916024 original size:23 final size:23
Alignment explanation
Indices: 13915969--13916053 Score: 116
Period size: 23 Copynumber: 3.6 Consensus size: 23
13915959 TTGAAAGGGT
* *
13915969 TCGGCAATGAAGGCCTAAACAGGAT
1 TCGGCAATGAAGGCCTAAA-A-AAG
*
13915994 TCGGCAATGAAAGCCTAAAAAAG
1 TCGGCAATGAAGGCCTAAAAAAG
13916017 TCGGCAATGAAGGCCTAAAAAAG
1 TCGGCAATGAAGGCCTAAAAAAG
*
13916040 TCAGCAATGAAGGC
1 TCGGCAATGAAGGC
13916054 TGAAAAATTT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
23 36 0.65
24 1 0.02
25 18 0.33
ACGTcount: A:0.41, C:0.19, G:0.26, T:0.14
Consensus pattern (23 bp):
TCGGCAATGAAGGCCTAAAAAAG
Found at i:13916230 original size:22 final size:22
Alignment explanation
Indices: 13916202--13916245 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
13916192 CTAAATCTTC
*
13916202 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
13916224 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
13916246 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:13926739 original size:22 final size:22
Alignment explanation
Indices: 13926714--13926780 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 22
13926704 AATTTTACTT
13926714 ATAAATAATATTATATTAATAA
1 ATAAATAATATTATATTAATAA
* *
13926736 ATAAATATTGTTATATTAATAA
1 ATAAATAATATTATATTAATAA
** *
13926758 ATAATATTCTAATATATTAATAA
1 ATAA-ATAATATTATATTAATAA
13926781 TATTACAAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
22 24 0.63
23 14 0.37
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (22 bp):
ATAAATAATATTATATTAATAA
Found at i:13926795 original size:16 final size:17
Alignment explanation
Indices: 13926715--13926801 Score: 63
Period size: 18 Copynumber: 4.9 Consensus size: 17
13926705 ATTTTACTTA
* *
13926715 TAAATAATATTATATTAA
1 TAAATAA-ATAATATTAC
* *
13926733 TAAATAAATATTGTTA-
1 TAAATAAATAATATTAC
13926749 TATTAATAAATAATATT-C
1 TA--AATAAATAATATTAC
13926767 TAATATATTAATAATATTAC
1 TAA-ATA--AATAATATTAC
13926787 -AAATAAATAATATTA
1 TAAATAAATAATATTA
13926802 TAATATATTA
Statistics
Matches: 57, Mismatches: 5, Indels: 16
0.73 0.06 0.21
Matches are distributed among these distances:
16 13 0.23
17 9 0.16
18 23 0.40
19 11 0.19
20 1 0.02
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (17 bp):
TAAATAAATAATATTAC
Found at i:13926814 original size:19 final size:19
Alignment explanation
Indices: 13926713--13926815 Score: 88
Period size: 19 Copynumber: 5.5 Consensus size: 19
13926703 TAATTTTACT
*
13926713 TATAAATAATATTATATTA
1 TATAAATAATATTATAATA
* *
13926732 -ATAAATAAATATTGTTATA
1 TATAAAT-AATATTATAATA
*
13926751 TTAATAAATAATATTCTAATA
1 -T-ATAAATAATATTATAATA
* *
13926772 TATTAATAATATTA-CA-A
1 TATAAATAATATTATAATA
13926789 -ATAAATAATATTATAATA
1 TATAAATAATATTATAATA
*
13926807 TATTAATAA
1 TATAAATAA
13926816 ACAATATAAA
Statistics
Matches: 66, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
16 12 0.18
17 2 0.03
18 8 0.12
19 27 0.41
20 1 0.02
21 10 0.15
22 6 0.09
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (19 bp):
TATAAATAATATTATAATA
Found at i:13926833 original size:35 final size:35
Alignment explanation
Indices: 13926753--13926821 Score: 102
Period size: 35 Copynumber: 1.9 Consensus size: 35
13926743 TTGTTATATT
* * *
13926753 AATAAATAATATTCTAATATATTAATAATATTACA
1 AATAAATAATATTATAATATATTAATAACAATACA
13926788 AATAAATAATATTATAATATATTAATAAACAATA
1 AATAAATAATATTATAATATATTAAT-AACAATA
13926822 TAAAGAATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
35 25 0.83
36 5 0.17
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (35 bp):
AATAAATAATATTATAATATATTAATAACAATACA
Found at i:13926882 original size:19 final size:19
Alignment explanation
Indices: 13926858--13926895 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
13926848 AAGTATTTTT
13926858 TATTAACATAATATT-TTAA
1 TATTAA-ATAATATTATTAA
*
13926877 TATTAAATATTATTATTAA
1 TATTAAATAATATTATTAA
13926896 AATATAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (19 bp):
TATTAAATAATATTATTAA
Found at i:13926924 original size:16 final size:17
Alignment explanation
Indices: 13926900--13926940 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
13926890 TATTAAAATA
*
13926900 TAATTATTTTTTAT-AT
1 TAATAATTTTTTATAAT
13926916 TAATAA-TTTTTATAAT
1 TAATAATTTTTTATAAT
*
13926932 AAATAATTT
1 TAATAATTT
13926941 CAATATATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 7 0.33
16 12 0.57
17 2 0.10
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TAATAATTTTTTATAAT
Found at i:13926925 original size:15 final size:16
Alignment explanation
Indices: 13926907--13926940 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
13926897 ATATAATTAT
*
13926907 TTTTTAT-ATTAATAA
1 TTTTTATAATAAATAA
13926922 TTTTTATAATAAATAA
1 TTTTTATAATAAATAA
13926938 TTT
1 TTT
13926941 CAATATATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TTTTTATAATAAATAA
Found at i:13926956 original size:26 final size:26
Alignment explanation
Indices: 13926917--13926980 Score: 87
Period size: 26 Copynumber: 2.5 Consensus size: 26
13926907 TTTTTATATT
*
13926917 AATA-ATTTTTATAATAAATAATTTC
1 AATATATTTTAATAATAAATAATTTC
*
13926942 AATATATTTTAATAATAAATAATTTT
1 AATATATTTTAATAATAAATAATTTC
*
13926968 TA-ATATTTTAATA
1 AATATATTTTAATA
13926981 GTTATATTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
25 15 0.43
26 20 0.57
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (26 bp):
AATATATTTTAATAATAAATAATTTC
Found at i:13927134 original size:15 final size:14
Alignment explanation
Indices: 13927103--13927133 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
13927093 TGCAAATATA
13927103 TTTCAAAAATAATT
1 TTTCAAAAATAATT
13927117 TTTCAAAAATAATT
1 TTTCAAAAATAATT
13927131 TTT
1 TTT
13927134 TACGAAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (14 bp):
TTTCAAAAATAATT
Found at i:13931207 original size:191 final size:194
Alignment explanation
Indices: 13930869--13931256 Score: 719
Period size: 191 Copynumber: 2.0 Consensus size: 194
13930859 ACTGGAGAGG
13930869 AAAAAGTTAGGAATTTTAAAAAAATTAAGAAAAGATTTGTTAGATTTTTGTCTCAAAACTGATTT
1 AAAAAGTTAGGAATTTTAAAAAAATTAAGAAAAGATTTGTTAGATTTTTGTCTCAAAACTGATTT
*
13930934 GAAAAACAATAGATGTAAAAACGTGAAAAAGGTAGAGGACTAGAGGAAGATGAAAATAGTAACCT
66 GAAAAACAATAGATGTAAAAACGTGAAAAAGGTAGAGGACTAGAGGAAGACGAAAATAGTAACCT
*
13930999 TATGGAGAGCAAATGCACTTGGCTTAGACGGAAATGCAGAGGCTTAGCAGTGAGATTGTTACAA
131 CATGGAGAGCAAATGCACTTGGCTTAGACGGAAATGCAGAGGCTTAGCAGTGAGATTGTTACAA
13931063 AAAAAGTTAGG-ATTTTAAAAAAATTAAGAAAAGATTTGTTAGATTTTTGTCTCAAAACT-ATTT
1 AAAAAGTTAGGAATTTTAAAAAAATTAAGAAAAGATTTGTTAGATTTTTGTCTCAAAACTGATTT
* *
13931126 GAAAAACAAT-GATGTAAAAACGTGAAAAAGTTAGAGGACTAGAGGAAGACGAAGATAGTAACCT
66 GAAAAACAATAGATGTAAAAACGTGAAAAAGGTAGAGGACTAGAGGAAGACGAAAATAGTAACCT
13931190 CATGGAGAGCAAATGCACTTGGCTTAGACGGAAATGCAGAGGCTTAGCAGTGAGATTGTTACAA
131 CATGGAGAGCAAATGCACTTGGCTTAGACGGAAATGCAGAGGCTTAGCAGTGAGATTGTTACAA
13931254 AAA
1 AAA
13931257 GACAAATGCA
Statistics
Matches: 190, Mismatches: 4, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
191 117 0.62
192 14 0.07
193 48 0.25
194 11 0.06
ACGTcount: A:0.43, C:0.09, G:0.22, T:0.25
Consensus pattern (194 bp):
AAAAAGTTAGGAATTTTAAAAAAATTAAGAAAAGATTTGTTAGATTTTTGTCTCAAAACTGATTT
GAAAAACAATAGATGTAAAAACGTGAAAAAGGTAGAGGACTAGAGGAAGACGAAAATAGTAACCT
CATGGAGAGCAAATGCACTTGGCTTAGACGGAAATGCAGAGGCTTAGCAGTGAGATTGTTACAA
Found at i:13932148 original size:15 final size:15
Alignment explanation
Indices: 13932130--13932159 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
13932120 AATAATGTTC
*
13932130 ATGAGAAAATTTTGG
1 ATGAAAAAATTTTGG
13932145 ATGAAAAAATTTTGG
1 ATGAAAAAATTTTGG
13932160 GAATATCCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
ATGAAAAAATTTTGG
Found at i:13932466 original size:16 final size:17
Alignment explanation
Indices: 13932428--13932469 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
13932418 TTTTACATAT
13932428 ATTTTTTTCAAAACACA
1 ATTTTTTTCAAAACACA
**
13932445 ATTTTTTTCAAAACATT
1 ATTTTTTTCAAAACACA
13932462 ATTTTTTT
1 ATTTTTTT
13932470 TTTCATTGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.33, C:0.12, G:0.00, T:0.55
Consensus pattern (17 bp):
ATTTTTTTCAAAACACA
Found at i:13934785 original size:15 final size:16
Alignment explanation
Indices: 13934758--13934792 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
13934748 TAATATATAT
13934758 TTTTATATTTTTAAAA
1 TTTTATATTTTTAAAA
13934774 TTTTAT-TTTTTAAAA
1 TTTTATATTTTTAAAA
13934789 TTTT
1 TTTT
13934793 TGAATAAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 13 0.68
16 6 0.32
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTTATATTTTTAAAA
Found at i:13935043 original size:22 final size:22
Alignment explanation
Indices: 13935020--13935062 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
13935010 ATTAAGTTAC
13935020 AATTATTAA-ATAATCTATTAACA
1 AATTA-TAATATAA-CTATTAACA
13935043 AATTATAATATAACTATTAA
1 AATTATAATATAACTATTAA
13935063 GCCATGATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (22 bp):
AATTATAATATAACTATTAACA
Found at i:13951407 original size:200 final size:199
Alignment explanation
Indices: 13951028--13951406 Score: 462
Period size: 200 Copynumber: 1.9 Consensus size: 199
13951018 ATTGTTAGTA
* * *
13951028 GAATTAAATTATTAAAAGCACTAAATATTTATTAAGAGTTTTTAATTTTTCAAGATTGTAAATGT
1 GAATTAAATTATTAAAACCACTAAATATTTATTAAGAGCTTTTAATTTTTCAAGATTGTAAATGG
** ** * *
13951093 GATTGAACTACTACATTATATACTAACTTCTACCAATTTTCTTAATTAATATTCCATAATTATGA
66 GATCAAACTACTACATTATATACTAACTTCTACCAAAGTTC-T-ATTAATATTCAATAATTATCA
* * * *
13951158 AATTTAAGTGAGCAATTTTGGTATTTTGATAAAAGTAGATATATTTTTTTAATTTTCCAAAATTG
129 AATCTAAATGAGCAATTTTGATATTTTGATAAAAGTAAATATATTTTTTTAATTTTCCAAAATTG
13951223 TCAATG
194 TCAATG
* * * *
13951229 GAATTGAATTATTAAAACCTCGT-AATA-TTATTAAGAGCTTTTAATTTTTTAAGATTGTTAATG
1 GAATTAAATTATTAAAACCAC-TAAATATTTATTAAGAGCTTTTAATTTTTCAAGATTGTAAATG
* * *
13951292 GGATCAAACTATTACATTATATA-TCAACTTCTATCAAAGTTC-CTTAATATTCAATAATTATCA
65 GGATCAAACTACTACATTATATACT-AACTTCTACCAAAGTTCTATTAATATTCAATAATTATCA
* *
13951355 AATCTAAATTAGTAATTTTGATATTTTGACTAAAGCAG-AAATATATTTTTTT
129 AATCTAAATGAGCAATTTTGATATTTTGA-TAAA--AGTAAATATATTTTTTT
13951407 TGTAATTTTT
Statistics
Matches: 151, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
197 42 0.28
198 4 0.03
199 14 0.09
200 68 0.45
201 22 0.15
202 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.43
Consensus pattern (199 bp):
GAATTAAATTATTAAAACCACTAAATATTTATTAAGAGCTTTTAATTTTTCAAGATTGTAAATGG
GATCAAACTACTACATTATATACTAACTTCTACCAAAGTTCTATTAATATTCAATAATTATCAAA
TCTAAATGAGCAATTTTGATATTTTGATAAAAGTAAATATATTTTTTTAATTTTCCAAAATTGTC
AATG
Found at i:13954321 original size:22 final size:22
Alignment explanation
Indices: 13954295--13954338 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
13954285 TGTATATTTA
*
13954295 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
13954317 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
13954339 GAAGATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:13954513 original size:23 final size:23
Alignment explanation
Indices: 13954487--13954571 Score: 116
Period size: 23 Copynumber: 3.6 Consensus size: 23
13954477 AAATTTTTCA
*
13954487 GCCTTCATTGCTGACTTTTTTAG
1 GCCTTCATTGCCGACTTTTTTAG
13954510 GCCTTCATTGCCGACTTTTTTAG
1 GCCTTCATTGCCGACTTTTTTAG
* * *
13954533 GCTTTCATTGCCGAATCCTGTTTAG
1 GCCTTCATTGCCG-A-CTTTTTTAG
13954558 GCCTTCATTGCCGA
1 GCCTTCATTGCCGA
13954572 ACCCTTTCAA
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
23 34 0.62
24 2 0.04
25 19 0.35
ACGTcount: A:0.14, C:0.26, G:0.19, T:0.41
Consensus pattern (23 bp):
GCCTTCATTGCCGACTTTTTTAG
Found at i:13958381 original size:24 final size:24
Alignment explanation
Indices: 13958331--13958378 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
13958321 TATCAATTAA
* * *
13958331 ATTAATAAATTTATAATTTAAATT
1 ATTAAAAAATTTAAAATTCAAATT
13958355 ATTAAAAAATTTTAAAATTCAAAT
1 ATTAAAAAA-TTTAAAATTCAAAT
13958379 ATTTAGTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (24 bp):
ATTAAAAAATTTAAAATTCAAATT
Found at i:13958631 original size:48 final size:49
Alignment explanation
Indices: 13958509--13958658 Score: 126
Period size: 51 Copynumber: 2.9 Consensus size: 49
13958499 ATTTTGCCTT
* * * *
13958509 CATACCATAATTAAAAAATATCTTTTTCTTTTATAATTATTTACTATAATACTC
1 CATACCATAATTAAAAAAAAT-ATATTCTCTTATAATTA-TTA-T-T-ATACTC
* * * *
13958563 CATATCATAATTATAGAAAAT-TCTTCTCTTA-AATTAATTATTATACTC
1 CATACCATAATTAAAAAAAATATATTCTCTTATAATT-ATTATTATACTC
13958611 TCATACCATAA-TAAAAAAAATACATATTCTCTTATAATTATTATTATA
1 -CATACCATAATTAAAAAAAAT--ATATTCTCTTATAATTATTATTATA
13958659 ATATCCTCGT
Statistics
Matches: 80, Mismatches: 10, Indels: 15
0.76 0.10 0.14
Matches are distributed among these distances:
48 14 0.17
49 10 0.12
50 1 0.01
51 25 0.31
52 13 0.16
54 17 0.21
ACGTcount: A:0.42, C:0.14, G:0.01, T:0.43
Consensus pattern (49 bp):
CATACCATAATTAAAAAAAATATATTCTCTTATAATTATTATTATACTC
Found at i:13958672 original size:54 final size:51
Alignment explanation
Indices: 13958586--13958685 Score: 121
Period size: 54 Copynumber: 1.9 Consensus size: 51
13958576 TAGAAAATTC
*
13958586 TTCTCTTAAATTAATTATTATACTCTCATACCATAATAAAAAAAATACATA
1 TTCTCTTAAATTAATTATAATACTCTCATACCATAATAAAAAAAATACATA
* * *
13958637 TTCTCTTATAATTATTATTATAATA-TCCTCGTACCATAATTATAAAAAT
1 TTCTCTTA-AATTA--ATTATAATACT-CTCATACCATAATAAAAAAAAT
13958686 GTTCTTTTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
51 8 0.20
52 5 0.12
53 1 0.02
54 27 0.66
ACGTcount: A:0.43, C:0.15, G:0.01, T:0.41
Consensus pattern (51 bp):
TTCTCTTAAATTAATTATAATACTCTCATACCATAATAAAAAAAATACATA
Found at i:13958798 original size:58 final size:62
Alignment explanation
Indices: 13958701--13958814 Score: 166
Period size: 58 Copynumber: 1.9 Consensus size: 62
13958691 TTTATTATTA
*
13958701 AATTAAAAAAATACCAATTCTCTTATTATTGACTCAAATTACTATAATAC-CTTTCTGACAT
1 AATTAAAAAAATACCAATTCTCTTATAATTGACTCAAATTACTATAATACTCTTTCTGACAT
*
13958762 AATTATAAAAATA-C-ATT-TCTTATAATTGA-TCAAAATTACTATAATACTCTTTC
1 AATTAAAAAAATACCAATTCTCTTATAATTGACTC-AAATTACTATAATACTCTTTC
13958815 ACCGTAATTA
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
57 2 0.04
58 26 0.53
59 8 0.16
60 1 0.02
61 12 0.24
ACGTcount: A:0.42, C:0.16, G:0.03, T:0.39
Consensus pattern (62 bp):
AATTAAAAAAATACCAATTCTCTTATAATTGACTCAAATTACTATAATACTCTTTCTGACAT
Found at i:13958823 original size:58 final size:60
Alignment explanation
Indices: 13958701--13958831 Score: 155
Period size: 58 Copynumber: 2.2 Consensus size: 60
13958691 TTTATTATTA
*
13958701 AATTAAAAAAATACCAATTCTCTTATTATTGACTCAAATTACTATAATACCTTTCTGACAT
1 AATTAAAAAAATACCAATTCTCTTATAATTGACTCAAATTACTATAATACCTTTC-GACAT
* *
13958762 AATTATAAAAATA-C-ATT-TCTTATAATTGA-TCAAAATTACTATAATACTCTTTC-ACCGT
1 AATTAAAAAAATACCAATTCTCTTATAATTGACTC-AAATTACTATAATAC-CTTTCGA-CAT
*
13958820 AATTACAAAAAT
1 AATTAAAAAAAT
13958832 GTTTTTATGA
Statistics
Matches: 63, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
57 3 0.05
58 39 0.62
59 8 0.13
60 1 0.02
61 12 0.19
ACGTcount: A:0.44, C:0.16, G:0.03, T:0.37
Consensus pattern (60 bp):
AATTAAAAAAATACCAATTCTCTTATAATTGACTCAAATTACTATAATACCTTTCGACAT
Found at i:13959437 original size:129 final size:128
Alignment explanation
Indices: 13959207--13959534 Score: 346
Period size: 129 Copynumber: 2.6 Consensus size: 128
13959197 TAAGAAGTTA
* * * * *
13959207 ACATGTGGTATTTTGTTTCAAAATTACTATAACACATCTATTAAATTATATATTAATTTTTAACA
1 ACATGTGATATTTTGTTT-AAAATTACTATAATACATCTATTAAATTACATATGAAATTTTAACA
* *
13959272 TAACATAAAATTAATCACATATTAAAGTACTAAAATATCATT-ACAATTGGTTTATAAAAATTTG
65 TAACATAAAATTAATCACATATTAAAGTACTAAAATA-CATTGACAATTGCTTAATAAAAATTTG
*
13959336 ACATGTGATATTTTATTTAAAAATTACTATAATATCAT-TATTAAATTACATATGAAATTTTAAC
1 ACATGTGATATTTTGTTT-AAAATTACTATAATA-CATCTATTAAATTACATATGAAATTTTAAC
* * * * * **
13959400 ATCATATAAAATTAA-CTACAT-TCTAAATTACTAAAATACCTTGGCCGTTGCTTAATAAAAATT
64 ATAACATAAAATTAATC-ACATAT-TAAAGTACTAAAATACATTGACAATTGCTTAATAAAAATT
13959463 TG
127 TG
* * * * * *
13959465 ACATGTGAAATTTTGTTTTAAATTCACTATAATA-ACCCTATTAAATT-CTTATTAAATGTTAA-
1 ACATGTGATATTTTGTTTAAAATT-ACTATAATACA-TCTATTAAATTACATATGAAATTTTAAC
13959527 ATAACATA
64 ATAACATA
13959535 TTAAAATAAT
Statistics
Matches: 167, Mismatches: 25, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
127 7 0.04
128 22 0.13
129 135 0.81
130 3 0.02
ACGTcount: A:0.43, C:0.11, G:0.06, T:0.40
Consensus pattern (128 bp):
ACATGTGATATTTTGTTTAAAATTACTATAATACATCTATTAAATTACATATGAAATTTTAACAT
AACATAAAATTAATCACATATTAAAGTACTAAAATACATTGACAATTGCTTAATAAAAATTTG
Found at i:13961179 original size:39 final size:39
Alignment explanation
Indices: 13961113--13961187 Score: 91
Period size: 39 Copynumber: 1.9 Consensus size: 39
13961103 GATTTGATCC
13961113 ATTTTTTACAAAAATAACAACACCTTACGAAA-AGAGGCT
1 ATTTTTTACAAAAATAACAACACCTTAC-AAATAGAGGCT
* * *
13961152 ATTTTTTACAAATATAACATTC-TCTTACAAATAGAG
1 ATTTTTTACAAAAATAACA-ACACCTTACAAATAGAG
13961188 TTGTGCATGA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
38 3 0.10
39 27 0.87
40 1 0.03
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (39 bp):
ATTTTTTACAAAAATAACAACACCTTACAAATAGAGGCT
Found at i:13961373 original size:21 final size:21
Alignment explanation
Indices: 13961337--13961381 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
13961327 CGAAAACATA
*
13961337 AAATTTAATTTTTAATTTTATT
1 AAATTTAATTTATAATTTT-TT
13961359 AAATTT-ATTTATAATTTTTT
1 AAATTTAATTTATAATTTTTT
13961379 AAA
1 AAA
13961382 AAAATTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 5 0.23
21 11 0.50
22 6 0.27
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
AAATTTAATTTATAATTTTTT
Found at i:13966864 original size:14 final size:15
Alignment explanation
Indices: 13966800--13966867 Score: 61
Period size: 15 Copynumber: 4.6 Consensus size: 15
13966790 ATTAAAAAAA
13966800 TATTTTTTA-AAGTAT
1 TATTTTTTATAA-TAT
* *
13966815 TATTATTTATCATAT
1 TATTTTTTATAATAT
**
13966830 TATTCAATT-TAATAT
1 TATT-TTTTATAATAT
13966845 TATTTTTTATAATA-
1 TATTTTTTATAATAT
13966859 TATTTTTTA
1 TATTTTTTA
13966868 AGAAAATCCC
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
14 11 0.25
15 29 0.66
16 4 0.09
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (15 bp):
TATTTTTTATAATAT
Found at i:13966867 original size:27 final size:28
Alignment explanation
Indices: 13966799--13966869 Score: 72
Period size: 30 Copynumber: 2.4 Consensus size: 28
13966789 AATTAAAAAA
*
13966799 ATATTTTTTAAAGTATTATTATTTATCAT
1 ATATTTTTT-AAGTATTATTATTTATAAT
* *
13966828 ATTATTCAATTTAA-TATTATTTTTTATAAT
1 A-TATT--TTTTAAGTATTATTATTTATAAT
13966858 ATATTTTTTAAG
1 ATATTTTTTAAG
13966870 AAAATCCCAT
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
27 5 0.15
29 5 0.15
30 19 0.56
31 2 0.06
32 3 0.09
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (28 bp):
ATATTTTTTAAGTATTATTATTTATAAT
Found at i:13967034 original size:15 final size:15
Alignment explanation
Indices: 13967016--13967046 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
13967006 TTTTTATTCA
*
13967016 TTTTTATTTTATATT
1 TTTTTATTTCATATT
13967031 TTTTTATTTCATATT
1 TTTTTATTTCATATT
13967046 T
1 T
13967047 ATCATTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTTATTTCATATT
Found at i:13969916 original size:12 final size:12
Alignment explanation
Indices: 13969899--13969923 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
13969889 CCTTCCTTTC
13969899 TATTTTGATTTT
1 TATTTTGATTTT
13969911 TATTTTGATTTT
1 TATTTTGATTTT
13969923 T
1 T
13969924 CTTTAATTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (12 bp):
TATTTTGATTTT
Found at i:13970879 original size:11 final size:11
Alignment explanation
Indices: 13970863--13970900 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
13970853 GTTATAATTA
13970863 AAATTTATATG
1 AAATTTATATG
*
13970874 AAATTTATA-A
1 AAATTTATATG
13970884 AAATTTTATATG
1 AAA-TTTATATG
13970896 AAATT
1 AAATT
13970901 CACATTTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
10 3 0.13
11 17 0.74
12 3 0.13
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (11 bp):
AAATTTATATG
Found at i:13971337 original size:10 final size:10
Alignment explanation
Indices: 13971318--13971357 Score: 52
Period size: 10 Copynumber: 4.4 Consensus size: 10
13971308 ATATAAAAAA
13971318 ATTT-TATAT
1 ATTTATATAT
13971327 ATTTATATAT
1 ATTTATATAT
13971337 ATTTATATA-
1 ATTTATATAT
13971346 A-TTATA-AT
1 ATTTATATAT
13971354 ATTT
1 ATTT
13971358 CAATTATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
7 1 0.04
8 6 0.21
9 7 0.25
10 14 0.50
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
ATTTATATAT
Found at i:13971343 original size:18 final size:17
Alignment explanation
Indices: 13971320--13971357 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
13971310 ATAAAAAAAT
*
13971320 TTTATATATTTATATATA
1 TTTATATAATTATA-ATA
13971338 TTTATATAATTATAATA
1 TTTATATAATTATAATA
13971355 TTT
1 TTT
13971358 CAATTATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTATATAATTATAATA
Found at i:13974540 original size:24 final size:24
Alignment explanation
Indices: 13974468--13974540 Score: 60
Period size: 24 Copynumber: 3.0 Consensus size: 24
13974458 TACTTATTTC
* *
13974468 AATTAAATTTGTTATTAAAATGTTAA
1 AATTAAATTT-TAATTAAAAT-ATAA
* *
13974494 AA--ATATTTTATATTAATATTATAA
1 AATTAAATTTTA-ATTAA-AATATAA
13974518 AATTAAATTTTAATTAAAATATA
1 AATTAAATTTTAATTAAAATATA
13974541 TTATTTATTA
Statistics
Matches: 37, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
23 1 0.03
24 20 0.54
25 7 0.19
26 9 0.24
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.47
Consensus pattern (24 bp):
AATTAAATTTTAATTAAAATATAA
Found at i:13978662 original size:517 final size:514
Alignment explanation
Indices: 13976190--13978757 Score: 4838
Period size: 512 Copynumber: 5.0 Consensus size: 514
13976180 TTCATGATAA
*
13976190 ACTTGCTTTATCTTTCTTTTACGTTCAAATCAATTGTTGTTTTGGAAAAAGGTGTTGCATATCAT
1 ACTTGCTTTATCTTTCTTTTACGTTCAAATCAATTGTTGTTTTAGAAAAAGGTGTTGCATATCAT
*
13976255 TTGCTTTAATATGAACTATTAATTATTCATTGGCATTGAATAGGATTGAATAATTTGACAAATTT
66 TTGCTTTAATATGAACTATTAATTATTGATTGGCATTGAATAGGATTGAATAATTTGACAAATTT
13976320 GAAGAACTTGGATTTAAGCAGCAATAGAATTGAAAGCTTTCAACCATCAAAGCAAGGTATAAATA
131 GAAGAACTTGGATTTAAGCAGCAATAGAATTGAAAGCTTTCAACCATCAAAGCAAGGTATAAATA
* *
13976385 TATATTTCAATTCACTTAATTAGGTTCTTATTTACGTGATCAATGCATAAAATTTCCGATTAACA
196 TATATTTCAATTCACTTAATTAAGTTCTTATTTACGTGATCAATGCATAAAATTTCCCATTAACA
13976450 ATGGCATATAATAGAAATATTCTTCTACAGGAAAGGAGATGCAACTAAGGATGACCAATTTGGAG
261 ATGGCATATAATAGAAATATTCTTCTACAGGAAAGGAGATGCAACTAAGGATGACCAATTTGGAG
13976515 GTTCTTGATTTAAGTAGTAATCTCTTCAAGAACGACACTTTTGCATTCCTTTCTGGCCTTCCAAG
326 GTTCTTGATTTAAGTAGTAATCTCTTCAAGAACGACACTTTTGCATTCCTTTCTGGCCTTCCAAG
*
13976580 TCTAAAGTCCCTGAATATGGGGGACAACCAATTGCAAGGTTCAATAGATATTGAAGGTAAAGCTA
391 TCTAAAGTCCCTGAATATGGGGGACAACCAATTGCAAGGCTCAATAGATATTGAAGGTAAAGCTA
*
13976645 TTACAGCTTTTTTTTTTTTTTTTAATTCTGTTTTAGAACCTTTTTGCTCATCAAATAGGT
456 TTACAGC-TTTTTTTTTTTTTTTAATTCTGTTTTAGAACCTTTTTGCTCATCAAATAGTT
13976705 ACTTGCTTTATCTTTCTTTTACGTTCAAATCAATTGTTGTTTTAGAAAAAGGTGTTGCATATCAT
1 ACTTGCTTTATCTTTCTTTTACGTTCAAATCAATTGTTGTTTTAGAAAAAGGTGTTGCATATCAT
13976770 TTGCTTTAATATGAACTATTAATTATTGATTGGCATTGAATAGGATTGAATAATTTGACAAATTT
66 TTGCTTTAATATGAACTATTAATTATTGATTGGCATTGAATAGGATTGAATAATTTGACAAATTT
13976835 GAAGAACTTGGATTTAAGCAGCAATAGAATTGAAAGCTTTCAACCATCAAAGCAAGGTATAAATA
131 GAAGAACTTGGATTTAAGCAGCAATAGAATTGAAAGCTTTCAACCATCAAAGCAAGGTATAAATA
*
13976900 TATATTTCAATTCACTTAATTAAGTTCTTATTTACGTGATCAATGCATAAAATTTCCGATTAACA
196 TATATTTCAATTCACTTAATTAAGTTCTTATTTACGTGATCAATGCATAAAATTTCCCATTAACA
13976965 ATGGCATATAATAGAAATATTCTTCTACAGGAAAGGAGATGCAACTAAGGATGACCAATTTGGAG
261 ATGGCATATAATAGAAATATTCTTCTACAGGAAAGGAGATGCAACTAAGGATGACCAATTTGGAG
*
13977030 GTTCTTGATTTAAGTAGTAATCTTTTCAAGAACGACACTTTTGCATTCCTTTCTGGCCTTCCAAG
326 GTTCTTGATTTAAGTAGTAATCTCTTCAAGAACGACACTTTTGCATTCCTTTCTGGCCTTCCAAG
*
13977095 TCTAAAGTCCCTGAATATGGGGGACAACCAATTGAAAGGCTCAATAGATATTGAAGGTAAAGCTA
391 TCTAAAGTCCCTGAATATGGGGGACAACCAATTGCAAGGCTCAATAGATATTGAAGGTAAAGCTA
*
13977160 TTACAAC--TTTTTTTTTTTTTAATTCTGTTTTAGAACCTTTTTGCTCATCAAATAGTT
456 TTACAGCTTTTTTTTTTTTTTTAATTCTGTTTTAGAACCTTTTTGCTCATCAAATAGTT
13977217 ACTTGCTTTATCTTTCTTTTACGTTCAAATCAATTGTTGTTTTAGAAAAAGGTGTTGCATATCAT
1 ACTTGCTTTATCTTTCTTTTACGTTCAAATCAATTGTTGTTTTAGAAAAAGGTGTTGCATATCAT
13977282 TTGCTTTAATATGAACTATTAATTATTGATTGGCATTGAATAGGATTGAATAATTTGACAAATTT
66 TTGCTTTAATATGAACTATTAATTATTGATTGGCATTGAATAGGATTGAATAATTTGACAAATTT
13977347 GAAGAACTTGGATTTAAGCAGCAATAGAATTGAAAGCTTTCAACCATCAAAGCAAGGTATAAATA
131 GAAGAACTTGGATTTAAGCAGCAATAGAATTGAAAGCTTTCAACCATCAAAGCAAGGTATAAATA
* * *
13977412 TATATTTCAATTCACTTAATGAAGTTCTTAATTACGTGATCAATGTATAAAATTTCCCATTAACA
196 TATATTTCAATTCACTTAATTAAGTTCTTATTTACGTGATCAATGCATAAAATTTCCCATTAACA
*
13977477 ATGGCATATAATAGAAATATTCTTCTACAGGAAAGGAGATGCAACTAAGGATGACTAATTTGGAG
261 ATGGCATATAATAGAAATATTCTTCTACAGGAAAGGAGATGCAACTAAGGATGACCAATTTGGAG
13977542 GTTCTTGATTTAAGTAGTAATCTCTTCAAGAACGACACTTTTGCATTCCTTTCTGGCCTTCCAAG
326 GTTCTTGATTTAAGTAGTAATCTCTTCAAGAACGACACTTTTGCATTCCTTTCTGGCCTTCCAAG
*
13977607 TCTAAAGTCCCTGAATATGGGGGACAACCAATTGAAAGGCTCAATAGATATTGAAGGTAAAGCTA
391 TCTAAAGTCCCTGAATATGGGGGACAACCAATTGCAAGGCTCAATAGATATTGAAGGTAAAGCTA
*
13977672 TTACAAC--TTTTTTTTTTTTTAATTCTGTTTTAGAACCTTTTTGCTCATCAAATAGTT
456 TTACAGCTTTTTTTTTTTTTTTAATTCTGTTTTAGAACCTTTTTGCTCATCAAATAGTT
13977729 ACTTGCTTTATCTTTCTTTTACGTTCAAATCAATTGTTGTTTTAGAAAAAGGTGTTGCATATCAT
1 ACTTGCTTTATCTTTCTTTTACGTTCAAATCAATTGTTGTTTTAGAAAAAGGTGTTGCATATCAT
13977794 TTGCTTTAATATGAACTATTAATTATTGATTGGCATTGAATAGGATTGAATAATTTGACAAATTT
66 TTGCTTTAATATGAACTATTAATTATTGATTGGCATTGAATAGGATTGAATAATTTGACAAATTT
13977859 GAAGAACTTGGATTTAAGCAGCAATAGAATTGAAAGCTTTCAACCATCAAAGCAAGGTATAAATA
131 GAAGAACTTGGATTTAAGCAGCAATAGAATTGAAAGCTTTCAACCATCAAAGCAAGGTATAAATA
* * *
13977924 TATATTTCAATTCACTTAATGAAGTTCTTAATTACGTGATCAATGTATAAAATTTCCCATTAACA
196 TATATTTCAATTCACTTAATTAAGTTCTTATTTACGTGATCAATGCATAAAATTTCCCATTAACA
*
13977989 ATGGCATATAATAGAAATATTCTTCTACAGGAAAGGAGATGCAACTAAGGATGACTAATTTGGAG
261 ATGGCATATAATAGAAATATTCTTCTACAGGAAAGGAGATGCAACTAAGGATGACCAATTTGGAG
13978054 GTTCTTGATTTAAGTAGTAATCTCTTCAAGAACGACACTTTTGCATTCCTTTCTGGCCTTCCAAG
326 GTTCTTGATTTAAGTAGTAATCTCTTCAAGAACGACACTTTTGCATTCCTTTCTGGCCTTCCAAG
* * *
13978119 TCTAAAGTCCCTGAGTATGAGGGACAACCAATTGCAAGGCTCAATAGATATTGACGGTAAAGCTA
391 TCTAAAGTCCCTGAATATGGGGGACAACCAATTGCAAGGCTCAATAGATATTGAAGGTAAAGCTA
*
13978184 TTACAGCTTTTTTTTTTTTTTTTAATTCTGTTTTAGAACCTTTTTGCTTATCAAATAGTT
456 TTACAGC-TTTTTTTTTTTTTTTAATTCTGTTTTAGAACCTTTTTGCTCATCAAATAGTT
13978244 AAACTTGCTTTATCTTTCTTTTACGTTCAAATCAATTGTTGTTTTAGAAAAAGGTGTTGCATATC
1 --ACTTGCTTTATCTTTCTTTTACGTTCAAATCAATTGTTGTTTTAGAAAAAGGTGTTGCATATC
13978309 ATTTGCTTTAATATGAACTATTAATTATTGATTGGCATTGAATAGGATTGAATAATTTGACAAAT
64 ATTTGCTTTAATATGAACTATTAATTATTGATTGGCATTGAATAGGATTGAATAATTTGACAAAT
13978374 TTGAAGAACTTGGATTTAAGCAGCAATAGAATTGAAAGCTTTCAACCATCAAAGCAAGGTATAAA
129 TTGAAGAACTTGGATTTAAGCAGCAATAGAATTGAAAGCTTTCAACCATCAAAGCAAGGTATAAA
13978439 TATATATTTCAATTCACTTAATTAAGTTCTTATTTACGTGATCAATGCATAAAATTTCCCATTAA
194 TATATATTTCAATTCACTTAATTAAGTTCTTATTTACGTGATCAATGCATAAAATTTCCCATTAA
*
13978504 CAATGGCATATAATAGATATATTCTTCTACAGGAAAGGAGATGCAACTAAGGATGACCAATTTGG
259 CAATGGCATATAATAGAAATATTCTTCTACAGGAAAGGAGATGCAACTAAGGATGACCAATTTGG
*
13978569 AGGTTCTTGATTTAAGTAGTAATCTCTTCAAGAACGATACTTTTGCATTCCTTTCTGGCCTTCCA
324 AGGTTCTTGATTTAAGTAGTAATCTCTTCAAGAACGACACTTTTGCATTCCTTTCTGGCCTTCCA
13978634 AGTCTAAAGTCCCTGAATATGGGGGACAACCAATTGCAAGGCTCAATAGATATTGAAGGTAAAGC
389 AGTCTAAAGTCCCTGAATATGGGGGACAACCAATTGCAAGGCTCAATAGATATTGAAGGTAAAGC
13978699 TATTACAGCTTTTTTTTTTTTTTTAATTCTGTTTTAGAACCTTTTTGCTCATCAAATAG
454 TATTACAGCTTTTTTTTTTTTTTTAATTCTGTTTTAGAACCTTTTTGCTCATCAAATAG
13978758 GTAAAATCTC
Statistics
Matches: 2018, Mismatches: 30, Indels: 9
0.98 0.01 0.00
Matches are distributed among these distances:
512 1012 0.50
515 504 0.25
516 49 0.02
517 453 0.22
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (514 bp):
ACTTGCTTTATCTTTCTTTTACGTTCAAATCAATTGTTGTTTTAGAAAAAGGTGTTGCATATCAT
TTGCTTTAATATGAACTATTAATTATTGATTGGCATTGAATAGGATTGAATAATTTGACAAATTT
GAAGAACTTGGATTTAAGCAGCAATAGAATTGAAAGCTTTCAACCATCAAAGCAAGGTATAAATA
TATATTTCAATTCACTTAATTAAGTTCTTATTTACGTGATCAATGCATAAAATTTCCCATTAACA
ATGGCATATAATAGAAATATTCTTCTACAGGAAAGGAGATGCAACTAAGGATGACCAATTTGGAG
GTTCTTGATTTAAGTAGTAATCTCTTCAAGAACGACACTTTTGCATTCCTTTCTGGCCTTCCAAG
TCTAAAGTCCCTGAATATGGGGGACAACCAATTGCAAGGCTCAATAGATATTGAAGGTAAAGCTA
TTACAGCTTTTTTTTTTTTTTTAATTCTGTTTTAGAACCTTTTTGCTCATCAAATAGTT
Found at i:13984003 original size:19 final size:19
Alignment explanation
Indices: 13983979--13984028 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
13983969 TATTCAAAAA
*
13983979 TTAAAAATAAAAAAAAATT
1 TTAAAAACAAAAAAAAATT
* *
13983998 TTAAAAACATAAAAAAATA
1 TTAAAAACAAAAAAAAATT
*
13984017 ATAAAAACAAAA
1 TTAAAAACAAAA
13984029 CAGCAAAGGT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.76, C:0.04, G:0.00, T:0.20
Consensus pattern (19 bp):
TTAAAAACAAAAAAAAATT
Found at i:13984526 original size:2 final size:2
Alignment explanation
Indices: 13984519--13984546 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
13984509 GTAGATATGA
13984519 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13984547 GTTCATAGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13984651 original size:70 final size:68
Alignment explanation
Indices: 13984540--13984669 Score: 172
Period size: 70 Copynumber: 1.9 Consensus size: 68
13984530 TATATATATA
* *** *
13984540 TATATATGTTCATAGAGTTTTTTGGTTTTTTTCTACATTGA-TCCAACTAAATTTAAATAAAATA
1 TATATATATTCATAGAAAATTTTGGTTTTTTTCTACATTGATTCC-ACGAAATTTAAATAAAATA
13984604 AAAT
65 AAAT
*
13984608 TATATATATTCATAGAAAATTTTGGTTTTTTTTTCTGCATTGATTCCACGAAATTTAAATAA
1 TATATATATTCATAGAAAATTTTGG--TTTTTTTCTACATTGATTCCACGAAATTTAAATAA
13984670 TAAAAATAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
68 21 0.40
70 29 0.55
71 3 0.06
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.46
Consensus pattern (68 bp):
TATATATATTCATAGAAAATTTTGGTTTTTTTCTACATTGATTCCACGAAATTTAAATAAAATAA
AAT
Found at i:13984672 original size:68 final size:67
Alignment explanation
Indices: 13984540--13984674 Score: 166
Period size: 68 Copynumber: 2.0 Consensus size: 67
13984530 TATATATATA
* *** *
13984540 TATATATGTTCATAGAGTTTTTTGGTTTTTTTCTACATTGATCCAACTAAATTTAAATAAAATAA
1 TATATATATTCATAGAAAATTTTGGTTTTTTTCTACATTGATCCAACGAAATTTAAAT-AAATAA
13984605 AAT
65 AAT
*
13984608 TATATATATTCATAGAAAATTTTGGTTTTTTTTTCTGCATTGATTCC-ACGAAATTTAAAT-AAT
1 TATATATATTCATAGAAAATTTTGG--TTTTTTTCTACATTGA-TCCAACGAAATTTAAATAAAT
13984671 AAAA
63 AAAA
13984675 ATAAAATTTT
Statistics
Matches: 58, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
68 28 0.48
70 27 0.47
71 3 0.05
ACGTcount: A:0.37, C:0.09, G:0.09, T:0.45
Consensus pattern (67 bp):
TATATATATTCATAGAAAATTTTGGTTTTTTTCTACATTGATCCAACGAAATTTAAATAAATAAA
AT
Found at i:13986154 original size:60 final size:59
Alignment explanation
Indices: 13986038--13986154 Score: 153
Period size: 60 Copynumber: 2.0 Consensus size: 59
13986028 TATTACTTGT
* * * *
13986038 TAAATATGTTAATTAAGGAGAAAGGTTATTATGGATTAGTTTGGTTTCACTTTCATACA
1 TAAATAGGTTAATTAAGGAGAAAGGCTATTATGGATTAATTTGGTTTCACTCTCATACA
* * **
13986097 TAAATAGGTTAGTTAAGGATTAAAGGCTATTATGGATTAATTTGGTTTTGCTCTCATA
1 TAAATAGGTTAATTAAGGA-GAAAGGCTATTATGGATTAATTTGGTTTCACTCTCATA
13986155 GAAGTGTGAT
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
59 17 0.35
60 32 0.65
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (59 bp):
TAAATAGGTTAATTAAGGAGAAAGGCTATTATGGATTAATTTGGTTTCACTCTCATACA
Found at i:13987366 original size:17 final size:18
Alignment explanation
Indices: 13987326--13987367 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
13987316 TGACACACTG
13987326 AAAAAATTGTTGCTTTGA
1 AAAAAATTGTTGCTTTGA
* *
13987344 ACAAAATTG-TGTTTTGA
1 AAAAAATTGTTGCTTTGA
13987361 AAAAAAT
1 AAAAAAT
13987368 AATATGTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.45, C:0.05, G:0.14, T:0.36
Consensus pattern (18 bp):
AAAAAATTGTTGCTTTGA
Found at i:13992309 original size:16 final size:15
Alignment explanation
Indices: 13992276--13992356 Score: 65
Period size: 16 Copynumber: 5.1 Consensus size: 15
13992266 TTAATATAAC
13992276 TATTAAATATTAAAAAT
1 TATT-AATATT-AAAAT
*
13992293 TATTTATTATTAAAAT
1 TA-TTAATATTAAAAT
13992309 TATTAATATTAAAAAT
1 TATTAATATT-AAAAT
* *
13992325 AATTATATTTTAATAA-
1 TATTA-ATATTAA-AAT
*
13992341 TATTAATAATAAAAT
1 TATTAATATTAAAAT
13992356 T
1 T
13992357 TTATGTTATT
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
14 2 0.04
15 13 0.25
16 22 0.42
17 13 0.25
18 2 0.04
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
TATTAATATTAAAAT
Found at i:13992322 original size:32 final size:31
Alignment explanation
Indices: 13992276--13992399 Score: 110
Period size: 32 Copynumber: 3.9 Consensus size: 31
13992266 TTAATATAAC
*
13992276 TATTAAATATTAAAAATTATTTATTATTAAAA
1 TATT-AATAATAAAAATTATTTATTATTAAAA
* *
13992308 TTATTAATATTAAAAATAATTATATT-TTAATAA
1 -TATTAATAATAAAAATTATT-TATTATTAA-AA
* *
13992341 TATTAATAATAAAATTTTATGTTATTATAAAAA
1 TATTAATAATAAAA-ATTAT-TTATTATTAAAA
*
13992374 TACTTAA-AAT-AAAATTATTTGTTATT
1 TA-TTAATAATAAAAATTATTTATTATT
13992400 CTTTATATTA
Statistics
Matches: 77, Mismatches: 8, Indels: 15
0.77 0.08 0.15
Matches are distributed among these distances:
30 6 0.08
31 4 0.05
32 35 0.45
33 24 0.31
34 8 0.10
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.48
Consensus pattern (31 bp):
TATTAATAATAAAAATTATTTATTATTAAAA
Found at i:13992430 original size:23 final size:24
Alignment explanation
Indices: 13992404--13992454 Score: 86
Period size: 23 Copynumber: 2.2 Consensus size: 24
13992394 GTTATTCTTT
13992404 ATATTATTTATTAAT-ATATTATA
1 ATATTATTTATTAATAATATTATA
*
13992427 ATATTATTTATTAGTAATATTATA
1 ATATTATTTATTAATAATATTATA
13992451 ATAT
1 ATAT
13992455 ATTAGAATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 14 0.54
24 12 0.46
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (24 bp):
ATATTATTTATTAATAATATTATA
Found at i:13992483 original size:31 final size:33
Alignment explanation
Indices: 13992415--13992485 Score: 101
Period size: 34 Copynumber: 2.2 Consensus size: 33
13992405 TATTATTTAT
* *
13992415 TAATATATTATAATATTATTTATTAGTAATATTA
1 TAATATATTAGAATATTATTTATTA-TAATATAA
13992449 TAATATATTAGAATATTATTTA-T-TAATATAA
1 TAATATATTAGAATATTATTTATTATAATATAA
13992480 TAATAT
1 TAATAT
13992486 TTATAAGTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
31 13 0.37
33 1 0.03
34 21 0.60
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (33 bp):
TAATATATTAGAATATTATTTATTATAATATAA
Found at i:13992632 original size:26 final size:26
Alignment explanation
Indices: 13992582--13992647 Score: 91
Period size: 26 Copynumber: 2.6 Consensus size: 26
13992572 TTAATATAAC
*
13992582 TATTAAAATAT-TAAAAATTATTTAT
1 TATTAAAATATATTAAAATTATTTAT
*
13992607 TATTAAAATATATTGAAATTATTTAT
1 TATTAAAATATATTAAAATTATTTAT
*
13992633 TATAAAAAT-TATTAA
1 TATTAAAATATATTAA
13992648 TATAAAAAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
25 16 0.44
26 20 0.56
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (26 bp):
TATTAAAATATATTAAAATTATTTAT
Found at i:13992653 original size:15 final size:16
Alignment explanation
Indices: 13992622--13992711 Score: 65
Period size: 18 Copynumber: 5.2 Consensus size: 16
13992612 AAATATATTG
*
13992622 AAATTATTTATTATAA
1 AAATTATTTAATATAA
13992638 AAATTA-TTAATATAAA
1 AAATTATTTAATAT-AA
* * *
13992654 AAATAATTATATTTTAA
1 AAATTATT-TAATATAA
*
13992671 TAATAATATTTAATATTAA
1 -AA-ATTATTTAATA-TAA
13992690 AATATTATGTTAATATAA
1 AA-ATTAT-TTAATATAA
13992708 AAAT
1 AAAT
13992712 ACTTAAAATA
Statistics
Matches: 58, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
15 6 0.10
16 13 0.22
17 5 0.09
18 21 0.36
19 13 0.22
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.44
Consensus pattern (16 bp):
AAATTATTTAATATAA
Found at i:13992702 original size:19 final size:18
Alignment explanation
Indices: 13992644--13992712 Score: 61
Period size: 19 Copynumber: 3.8 Consensus size: 18
13992634 ATAAAAATTA
*
13992644 TTAATA-TAAAA-AATAA
1 TTAATATTAAAATAATAT
*
13992660 TTATATTTTAATAATAATAT
1 TTA-ATATTAA-AATAATAT
*
13992680 TTAATATTAAAATATTAT
1 TTAATATTAAAATAATAT
*
13992698 GTTAATATAAAAATA
1 -TTAATATTAAAATA
13992713 CTTAAAATAA
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
16 3 0.07
17 2 0.05
18 10 0.23
19 21 0.49
20 7 0.16
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.43
Consensus pattern (18 bp):
TTAATATTAAAATAATAT
Found at i:13992769 original size:35 final size:34
Alignment explanation
Indices: 13992729--13992848 Score: 109
Period size: 35 Copynumber: 3.4 Consensus size: 34
13992719 ATAAATTATT
* * *
13992729 TATTATTCTTTATATTGTTTATTAATATATTATAA
1 TATTATTATTTATAAT-ATTATTAATATATTATAA
*
13992764 TATTATTTATTTGTAATATTATTAATATATTATAA
1 TATTA-TTATTTATAATATTATTAATATATTATAA
* * *
13992799 TATTATTTATAATATAATAATATTTAT-TATTA-ATA
1 TATTA-TTAT-TTATAATATTATTAATATATTATA-A
*
13992834 TAATATTATTTATAA
1 TATTATTATTTATAA
13992849 GTAAAAATTA
Statistics
Matches: 72, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
33 5 0.07
34 5 0.07
35 42 0.58
36 20 0.28
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.57
Consensus pattern (34 bp):
TATTATTATTTATAATATTATTAATATATTATAA
Found at i:13992785 original size:12 final size:11
Alignment explanation
Indices: 13992751--13992834 Score: 52
Period size: 12 Copynumber: 7.5 Consensus size: 11
13992741 TATTGTTTAT
13992751 TAATA-TATTA
1 TAATATTATTA
13992761 TAATATTATTTA
1 TAATATTA-TTA
** *
13992773 TTTGTAATATTA
1 -TAATATTATTA
13992785 TTAATA-TATTA
1 -TAATATTATTA
13992796 TAATATTATTTA
1 TAATATTA-TTA
13992808 TAATA-TA--A
1 TAATATTATTA
13992816 TAATATTTATTA
1 TAATA-TTATTA
13992828 TTAATAT
1 -TAATAT
13992835 AATATTATTT
Statistics
Matches: 59, Mismatches: 5, Indels: 18
0.72 0.06 0.22
Matches are distributed among these distances:
8 6 0.10
10 12 0.20
11 11 0.19
12 20 0.34
13 10 0.17
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (11 bp):
TAATATTATTA
Found at i:13995312 original size:20 final size:23
Alignment explanation
Indices: 13995282--13995326 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
13995272 TACAAATTAC
13995282 AATATTTATATT-TAT-TTTTAA
1 AATATTTATATTCTATGTTTTAA
13995303 AATA-TTATATTCTATGTTTTAA
1 AATATTTATATTCTATGTTTTAA
13995325 AA
1 AA
13995327 GAATTATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.32
21 7 0.32
22 8 0.36
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (23 bp):
AATATTTATATTCTATGTTTTAA
Found at i:13995332 original size:23 final size:20
Alignment explanation
Indices: 13995287--13995334 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 20
13995277 ATTACAATAT
*
13995287 TTATATTTATTTTTAAAATA
1 TTATATTTATTTTTAAAAAA
13995307 TTATATTCTATGTTTTAAAAGAA
1 TTATATT-TAT-TTTTAAAA-AA
13995330 TTATA
1 TTATA
13995335 ATAAAAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 7 0.29
21 3 0.12
22 8 0.33
23 6 0.25
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (20 bp):
TTATATTTATTTTTAAAAAA
Found at i:14000315 original size:28 final size:29
Alignment explanation
Indices: 14000260--14000317 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
14000250 ATAAAATTAT
* *
14000260 AAATTTAAATATTATATTAAAATATTTTA
1 AAATTTAAATATTACATTAAAACATTTTA
*
14000289 AAATTTAAATATTACA-TAGAACATTTTA
1 AAATTTAAATATTACATTAAAACATTTTA
14000317 A
1 A
14000318 TCCTACTCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 11 0.42
29 15 0.58
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (29 bp):
AAATTTAAATATTACATTAAAACATTTTA
Found at i:14003257 original size:2 final size:2
Alignment explanation
Indices: 14003250--14003275 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14003240 AGTTCTATGA
14003250 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
14003276 TCATATCTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14003262 original size:90 final size:86
Alignment explanation
Indices: 14003087--14003258 Score: 251
Period size: 86 Copynumber: 2.0 Consensus size: 86
14003077 ATAGATAAAA
* *
14003087 TTTTATTTTTATTATTTTTATTTTTATTTAAATTTAGTGGAATCAATGTAGAAAAAAAAAACCAA
1 TTTTATTTTTATTATTTTTATTTTTACTTAAATTTAGTAGAATCAATGTAG--AAAAAAAACCAA
*
14003152 AAATTTCTATGAATATATATAGT
64 AAAGTTCTATGAATATATATAGT
14003175 TTTTATTTGTTAGTTATTTTTATTTTTACTTAAATTT-GTTAG-ATCAATGTAG-AAAAAAACCA
1 TTTTATTT-TTA-TTATTTTTATTTTTACTTAAATTTAG-TAGAATCAATGTAGAAAAAAAACCA
14003237 AAAAGTTCTATGAATATATATA
63 AAAAGTTCTATGAATATATATA
14003259 TATATATATA
Statistics
Matches: 78, Mismatches: 3, Indels: 8
0.88 0.03 0.09
Matches are distributed among these distances:
86 31 0.40
88 8 0.10
89 14 0.18
90 25 0.32
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.47
Consensus pattern (86 bp):
TTTTATTTTTATTATTTTTATTTTTACTTAAATTTAGTAGAATCAATGTAGAAAAAAAACCAAAA
AGTTCTATGAATATATATAGT
Found at i:14010088 original size:14 final size:14
Alignment explanation
Indices: 14010069--14010095 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14010059 GGTGACATCG
14010069 TAGGTGTAGCTTGA
1 TAGGTGTAGCTTGA
14010083 TAGGTGTAGCTTG
1 TAGGTGTAGCTTG
14010096 CTTCTTAAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.07, G:0.37, T:0.37
Consensus pattern (14 bp):
TAGGTGTAGCTTGA
Found at i:14015917 original size:13 final size:14
Alignment explanation
Indices: 14015884--14015917 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
14015874 CATGGGATTT
14015884 TTTTAAAAAATATA
1 TTTTAAAAAATATA
*
14015898 TTATAAAAAATA-A
1 TTTTAAAAAATATA
14015911 TTTTAAA
1 TTTTAAA
14015918 TTGAATAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
TTTTAAAAAATATA
Found at i:14018881 original size:15 final size:14
Alignment explanation
Indices: 14018861--14019185 Score: 69
Period size: 15 Copynumber: 22.9 Consensus size: 14
14018851 CGTTTTCTTT
*
14018861 AAACCCTAAATTTCA
1 AAACCCTAAAATT-A
14018876 AAACCCTAAAATTA
1 AAACCCTAAAATTA
*
14018890 AAACCCTAAAA-TC
1 AAACCCTAAAATTA
* ****
14018903 AAACCCCAACACCCC
1 AAACCCTAA-AATTA
*
14018918 AAACCCTAAAA-TG
1 AAACCCTAAAATTA
* *
14018931 AAACTCC-AAACCTTC
1 AAAC-CCTAAA-ATTA
* *
14018946 AAACCATAAAA-TG
1 AAACCCTAAAATTA
* * *
14018959 AAACCCCAAACCTTT
1 AAACCCTAAA-ATTA
*
14018974 AAACCTTAAAATTA
1 AAACCCTAAAATTA
* *
14018988 AAACTCC-AAACCTTC
1 AAAC-CCTAAA-ATTA
*
14019003 AAACCCTAAAATCA
1 AAACCCTAAAATTA
**
14019017 AAACCCTAAACCCTA
1 AAACCCTAAA-ATTA
* *
14019032 CAAACCCT-TAATCA
1 -AAACCCTAAAATTA
* *
14019046 AAACCC-CAAATCTC
1 AAACCCTAAAAT-TA
*
14019060 AAACCTTAAAATTA
1 AAACCCTAAAATTA
* *
14019074 AAACTCC-AAACCTTC
1 AAAC-CCTAAA-ATTA
*
14019089 CAACCCTAAAATT-
1 AAACCCTAAAATTA
* * *
14019102 AAACCGTAAATCTTTT
1 AAACCCTAAA--ATTA
**
14019118 AAACCCTAAAACCA
1 AAACCCTAAAATTA
* * *
14019132 AAA-CTTCAAATCTC
1 AAACCCTAAAAT-TA
*
14019146 AAACCCTAAAATCA
1 AAACCCTAAAATTA
* *
14019160 AAA-CCTCAAATCTC
1 AAACCCTAAAAT-TA
14019174 AAACCCTAAAAT
1 AAACCCTAAAAT
14019186 CCAAAAACAT
Statistics
Matches: 217, Mismatches: 67, Indels: 52
0.65 0.20 0.15
Matches are distributed among these distances:
13 54 0.25
14 69 0.32
15 78 0.36
16 16 0.07
ACGTcount: A:0.48, C:0.31, G:0.01, T:0.19
Consensus pattern (14 bp):
AAACCCTAAAATTA
Found at i:14018904 original size:28 final size:29
Alignment explanation
Indices: 14018861--14019191 Score: 224
Period size: 28 Copynumber: 11.6 Consensus size: 29
14018851 CGTTTTCTTT
* * *
14018861 AAACCCTAAATTTCAAAACCCTAAA-ATTA
1 AAACCCTAAA-ATCAAAACCCTAAACCTTC
* *
14018890 AAACCCTAAAATC-AAACCCCAACACC-CC
1 AAACCCTAAAATCAAAACCCTAA-ACCTTC
*
14018918 AAACCCTAAAAT-GAAACTCC-AAACCTTC
1 AAACCCTAAAATCAAAAC-CCTAAACCTTC
* * * *
14018946 AAACCATAAAAT-GAAACCCCAAACCTTT
1 AAACCCTAAAATCAAAACCCTAAACCTTC
* *
14018974 AAACCTTAAAATTAAAACTCC-AAACCTTC
1 AAACCCTAAAATCAAAAC-CCTAAACCTTC
*
14019003 AAACCCTAAAATCAAAACCCTAAACCCTAC
1 AAACCCTAAAATCAAAACCCTAAA-CCTTC
* * *
14019033 AAACCCT-TAATCAAAACCCCAAATC-TC
1 AAACCCTAAAATCAAAACCCTAAACCTTC
* *
14019060 AAACCTTAAAATTAAAACTCC-AAACCTTC
1 AAACCCTAAAATCAAAAC-CCTAAACCTTC
* * * * *
14019089 CAACCCTAAAAT-TAAACCGTAAATCTTTT
1 AAACCCTAAAATCAAAACCCTAAA-CCTTC
* * *
14019118 AAACCCTAAAACCAAAA-CTTCAAATC-TC
1 AAACCCTAAAATCAAAACCCT-AAACCTTC
*
14019146 AAACCCTAAAATCAAAA-CCTCAAATC-TC
1 AAACCCTAAAATCAAAACCCT-AAACCTTC
14019174 AAACCCTAAAATCCAAAA
1 AAACCCTAAAAT-CAAAA
14019192 ACATCAAAAT
Statistics
Matches: 247, Mismatches: 37, Indels: 36
0.77 0.12 0.11
Matches are distributed among these distances:
27 21 0.09
28 117 0.47
29 90 0.36
30 19 0.08
ACGTcount: A:0.49, C:0.31, G:0.01, T:0.19
Consensus pattern (29 bp):
AAACCCTAAAATCAAAACCCTAAACCTTC
Found at i:14019013 original size:57 final size:57
Alignment explanation
Indices: 14018890--14019185 Score: 232
Period size: 57 Copynumber: 5.2 Consensus size: 57
14018880 CCTAAAATTA
* * *
14018890 AAACCCTAAAATCAAACCCCAACACC-CCAAACCCTAAAA-TGAAACTCCAAACCTTC
1 AAACCCTAAAATAAAACCCCAA-ACCTTCAAACCCTAAAATTAAAACTCCAAACCTTC
* * * *
14018946 AAACCATAAAATGAAACCCCAAACCTTTAAACCTTAAAATTAAAACTCCAAACCTTC
1 AAACCCTAAAATAAAACCCCAAACCTTCAAACCCTAAAATTAAAACTCCAAACCTTC
* * * * * *
14019003 AAACCCTAAAATCAAAACCCTAAACCCTACAAACCCT-TAATCAAAACCCCAAATC-TC
1 AAACCCTAAAAT-AAAACCCCAAA-CCTTCAAACCCTAAAATTAAAACTCCAAACCTTC
* * * * * *
14019060 AAACCTTAAAATTAAAACTCCAAACCTTCCAACCCTAAAATT-AAAC-CGTAAATCTTTT
1 AAACCCTAAAA-TAAAACCCCAAACCTTCAAACCCTAAAATTAAAACTC-CAAA-CCTTC
* ** * * *
14019118 AAACCCTAAAACCAAAACTTCAAATC-TCAAACCCTAAAATCAAAAC-CTCAAATC-TC
1 AAACCCTAAAA-TAAAACCCCAAACCTTCAAACCCTAAAATTAAAACTC-CAAACCTTC
14019174 AAACCCTAAAAT
1 AAACCCTAAAAT
14019186 CCAAAAACAT
Statistics
Matches: 190, Mismatches: 40, Indels: 21
0.76 0.16 0.08
Matches are distributed among these distances:
55 4 0.02
56 59 0.31
57 64 0.34
58 54 0.28
59 9 0.05
ACGTcount: A:0.48, C:0.32, G:0.01, T:0.19
Consensus pattern (57 bp):
AAACCCTAAAATAAAACCCCAAACCTTCAAACCCTAAAATTAAAACTCCAAACCTTC
Found at i:14019070 original size:86 final size:87
Alignment explanation
Indices: 14018917--14019191 Score: 269
Period size: 86 Copynumber: 3.2 Consensus size: 87
14018907 CCCAACACCC
* * * ** * *
14018917 CAAACCCTAAAAT-GAAACTCC-AAA-CCTTCAAACCATAAAA-TGAAACCCCAAACCTTTAAAC
1 CAAACCCTAAAATCAAAAC-CCTAAACCCTACAAACCCTAAAACCAAAACCCCAAATC-TCAAAC
14018978 CTTAAAATTAAAACTCCAAACCTT
64 CTTAAAATTAAAACTCCAAACCTT
* *
14019002 CAAACCCTAAAATCAAAACCCTAAACCCTACAAACCCT-TAATCAAAACCCCAAATCTCAAACCT
1 CAAACCCTAAAATCAAAACCCTAAACCCTACAAACCCTAAAACCAAAACCCCAAATCTCAAACCT
14019066 TAAAATTAAAACTCCAAACCTT
66 TAAAATTAAAACTCCAAACCTT
* * * * * ** ** *
14019088 CCAACCCTAAAAT-TAAACCGTAAATCTTTTAAACCCTAAAACCAAAACTTCAAATCTCAAACCC
1 CAAACCCTAAAATCAAAACCCTAAACCCTACAAACCCTAAAACCAAAACCCCAAATCTCAAACCT
* *
14019152 TAAAATCAAAAC-CTCAAATC-T
66 TAAAATTAAAACTC-CAAACCTT
14019173 CAAACCCTAAAATCCAAAA
1 CAAACCCTAAAAT-CAAAA
14019192 ACATCAAAAT
Statistics
Matches: 158, Mismatches: 24, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
85 47 0.30
86 87 0.55
87 24 0.15
ACGTcount: A:0.48, C:0.31, G:0.01, T:0.20
Consensus pattern (87 bp):
CAAACCCTAAAATCAAAACCCTAAACCCTACAAACCCTAAAACCAAAACCCCAAATCTCAAACCT
TAAAATTAAAACTCCAAACCTT
Found at i:14024218 original size:24 final size:24
Alignment explanation
Indices: 14024182--14024236 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
14024172 TGACAAATTT
* *
14024182 AAATGAATTTAATTTAATTAAATC
1 AAATTAATCTAATTTAATTAAATC
* *
14024206 TAATTAATCTAATTTAATTAACTC
1 AAATTAATCTAATTTAATTAAATC
14024230 AAATTAA
1 AAATTAA
14024237 AATATTAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (24 bp):
AAATTAATCTAATTTAATTAAATC
Found at i:14025144 original size:60 final size:62
Alignment explanation
Indices: 14024889--14025144 Score: 166
Period size: 62 Copynumber: 4.2 Consensus size: 62
14024879 GATGTGAAAT
** * * * * * * *
14024889 TTTAAAAATTAACTATATTCAATTACATCATTTAATTAAAAAAAACACCGTAAGTGCTTGCA
1 TTTAAAAATTAAAAATACTCAATTACAGCATTTAATTATAAAAAATATCATAATTGCTTGCA
* * * * * * * * *
14024951 TATAAATAA-AAAAAATACT-AAATA-ATG-ATGTTTAAATAGAAGAAATGTCGTAATTGCTTGA
1 TTTAAA-AATTAAAAATACTCAATTACA-GCA--TTTAATTATAAAAAATATCATAATTGCTTGC
14025012 A
62 A
* * *
14025013 TTTAAAAATTAAAAATACTCAATTACAGTATTTGATTATAAAAAATATCATAATTACTTGCA
1 TTTAAAAATTAAAAATACTCAATTACAGCATTTAATTATAAAAAATATCATAATTGCTTGCA
* * * * * * *
14025075 TTTAGAAATTGAATATATTTAATTA-AGGCATTTAATTA-AAAAAA-GTCATGATTGCTTGCA
1 TTTAAAAATTAAAAATACTCAATTACA-GCATTTAATTATAAAAAATATCATAATTGCTTGCA
14025135 TTTAAAAATT
1 TTTAAAAATT
14025145 TTAATGTCGT
Statistics
Matches: 148, Mismatches: 37, Indels: 20
0.72 0.18 0.10
Matches are distributed among these distances:
60 24 0.16
61 13 0.09
62 102 0.69
63 7 0.05
64 2 0.01
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.36
Consensus pattern (62 bp):
TTTAAAAATTAAAAATACTCAATTACAGCATTTAATTATAAAAAATATCATAATTGCTTGCA
Found at i:14031712 original size:2 final size:2
Alignment explanation
Indices: 14031705--14031736 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
14031695 CTTTCTCATG
14031705 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
14031737 TCAAATGGAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Done.