Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15507587
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 86 of 91
Found at i:14564399 original size:23 final size:23
Alignment explanation
Indices: 14564373--14564416 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
14564363 TTTTCTTTAT
*
14564373 TTTTTATTTTTATT-TATTTTCAC
1 TTTTT-TTATTATTCTATTTTCAC
14564396 TTTTTTTATTATTCTATTTTC
1 TTTTTTTATTATTCTATTTTC
14564417 TTTAAATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.16, C:0.09, G:0.00, T:0.75
Consensus pattern (23 bp):
TTTTTTTATTATTCTATTTTCAC
Found at i:14564521 original size:60 final size:60
Alignment explanation
Indices: 14564423--14564617 Score: 256
Period size: 60 Copynumber: 3.2 Consensus size: 60
14564413 TTTCTTTAAA
*
14564423 TAAAAATCAAAAGTTTCAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAAA-TTTAAAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCT
14564484 TAAAAAT-AAAATTTAAAAAAAAA-AGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAAATTTAAAAAAAAATA--TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
* * * *
14564544 TGAAAAT-AAAAGTTT-CAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTGCT
1 TAAAAATCAAAA-TTTAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
*
14564603 TGAAAATCAAAATTT
1 TAAAAATCAAAATTT
14564618 CCGAAAAATA
Statistics
Matches: 123, Mismatches: 5, Indels: 14
0.87 0.04 0.10
Matches are distributed among these distances:
58 1 0.01
59 53 0.43
60 57 0.46
61 12 0.10
ACGTcount: A:0.48, C:0.06, G:0.13, T:0.33
Consensus pattern (60 bp):
TAAAAATCAAAATTTAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:14564593 original size:59 final size:59
Alignment explanation
Indices: 14564425--14564627 Score: 275
Period size: 59 Copynumber: 3.4 Consensus size: 59
14564415 TCTTTAAATA
* *
14564425 AAAATCAAAAGTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTA
1 AAAATCAAAA-TTTC-AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTG
* * *
14564486 AAAAT-AAAATTTAAAAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
1 AAAATCAAAATTTCAAAAAAATA--TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTG
*
14564546 AAAAT-AAAAGTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTGCTTG
1 AAAATCAAAA-TTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTG
**
14564605 AAAATCAAAATTTCCGAAAAATA
1 AAAATCAAAATTTCAAAAAAATA
14564628 AATTTTCAAA
Statistics
Matches: 127, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
58 8 0.06
59 53 0.42
60 50 0.39
61 16 0.13
ACGTcount: A:0.48, C:0.07, G:0.13, T:0.32
Consensus pattern (59 bp):
AAAATCAAAATTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTG
Found at i:14564612 original size:76 final size:74
Alignment explanation
Indices: 14564546--14564701 Score: 215
Period size: 76 Copynumber: 2.1 Consensus size: 74
14564536 ATTTTCCTTG
* *
14564546 AAAATAAAAGTTTCAAAAAA-ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTGCTTGAAAAT
1 AAAAT-AAAGTTTCAAAAAAGA-ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
14564610 CAAAATTTCCGA
64 C-AAATTTCCGA
* *
14564622 AAAATAAATTTTCAAAAAAGGAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATC
1 AAAATAAAGTTTCAAAAAA-GAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC
*
14564687 AAAGTTTCAGA
65 AAA-TTTCCGA
14564698 AAAA
1 AAAA
14564702 ATATTTTTGA
Statistics
Matches: 72, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
75 16 0.22
76 55 0.76
77 1 0.01
ACGTcount: A:0.47, C:0.08, G:0.15, T:0.31
Consensus pattern (74 bp):
AAAATAAAGTTTCAAAAAAGAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCA
AATTTCCGA
Found at i:14564657 original size:135 final size:133
Alignment explanation
Indices: 14564502--14564753 Score: 416
Period size: 135 Copynumber: 1.9 Consensus size: 133
14564492 AAATTTAAAA
14564502 AAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAGTTTCA-AAAAA
1 AAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAGTTTCAGAAAAA
* * *
14564566 ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTGCTTGAAAATCAAAATTTCCGAAAAATAAAT
66 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTCCGAAAAATAAAT
14564631 TTTC
130 TTTC
* *
14564635 AAAAAAGGAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAGAAA
1 AAAAAAGG--TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAGTTTCAGAAA
*
14564700 AAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
64 AAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
14564754 AACAAATATT
Statistics
Matches: 110, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
133 8 0.07
135 56 0.51
136 46 0.42
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.33
Consensus pattern (133 bp):
AAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAGTTTCAGAAAAA
ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCCGAAAAATAAATT
TTC
Found at i:14564709 original size:60 final size:57
Alignment explanation
Indices: 14564621--14564793 Score: 224
Period size: 60 Copynumber: 3.0 Consensus size: 57
14564611 AAAATTTCCG
* *
14564621 AAAAATAAATTTTCAAAAAAGGAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT
1 AAAAATAAAGTTTCAAAAAA--TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT
**
14564680 GGAAATCAAAGTTTCAGAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT
1 AAAAAT-AAAGTTTC--AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT
* *
14564740 AAAAATAAATTTTCAACAAATA-TTTTG-GGAAAAAGTTGAAAGTATCAATTTTCC
1 AAAAATAAAGTTTCAAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCC
14564794 CTACGCAAGA
Statistics
Matches: 102, Mismatches: 8, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
55 2 0.02
56 29 0.28
57 7 0.07
59 11 0.11
60 47 0.46
62 6 0.06
ACGTcount: A:0.45, C:0.08, G:0.14, T:0.34
Consensus pattern (57 bp):
AAAAATAAAGTTTCAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT
Found at i:14573231 original size:20 final size:21
Alignment explanation
Indices: 14573206--14573245 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
14573196 TGAAAATTGG
14573206 ATTTAAAAA-TTAAATTTTTT
1 ATTTAAAAATTTAAATTTTTT
14573226 ATTTAAAAATTTAAATTTTT
1 ATTTAAAAATTTAAATTTTT
14573246 ATAATAACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
ATTTAAAAATTTAAATTTTTT
Found at i:14575673 original size:12 final size:12
Alignment explanation
Indices: 14575652--14575681 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
14575642 TAACAATTAT
14575652 TAATAAAATCAA
1 TAATAAAATCAA
*
14575664 TAATATAATCAA
1 TAATAAAATCAA
14575676 TAATAA
1 TAATAA
14575682 TATAAAACAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (12 bp):
TAATAAAATCAA
Found at i:14578491 original size:19 final size:18
Alignment explanation
Indices: 14578457--14578502 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 18
14578447 ATAAAATAGG
14578457 AAAAAT-AAATTCAAAAT
1 AAAAATAAAATTCAAAAT
* *
14578474 CAAAATCAAAATTGAAAAT
1 AAAAAT-AAAATTCAAAAT
14578493 AAAAATAAAA
1 AAAAATAAAA
14578503 GAAAAAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 5 0.21
18 4 0.17
19 15 0.62
ACGTcount: A:0.72, C:0.07, G:0.02, T:0.20
Consensus pattern (18 bp):
AAAAATAAAATTCAAAAT
Found at i:14579490 original size:24 final size:23
Alignment explanation
Indices: 14579463--14579507 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
14579453 CATCTTATTT
14579463 CCCTTTATTA-TTTTTTATTTTTGA
1 CCCTTT-TTACTTTTTT-TTTTTGA
14579487 CCCTTTTTACTTTTTTTTTTT
1 CCCTTTTTACTTTTTTTTTTT
14579508 ACTTTTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.11, C:0.16, G:0.02, T:0.71
Consensus pattern (23 bp):
CCCTTTTTACTTTTTTTTTTTGA
Found at i:14579508 original size:13 final size:13
Alignment explanation
Indices: 14579490--14579514 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14579480 TTTTTGACCC
14579490 TTTTTACTTTTTT
1 TTTTTACTTTTTT
14579503 TTTTTACTTTTT
1 TTTTTACTTTTT
14579515 AAAGCAAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTTACTTTTTT
Found at i:14580303 original size:17 final size:17
Alignment explanation
Indices: 14580281--14580331 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
14580271 AACAAATAGT
14580281 GATAATTATTTAAACTA
1 GATAATTATTTAAACTA
*
14580298 GATAATTGTTTAAA-TA
1 GATAATTATTTAAACTA
*
14580314 GTCATAAATATTTAAACT
1 G--ATAATTATTTAAACT
14580332 TGTTAAGTAG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
16 3 0.11
17 13 0.46
18 11 0.39
19 1 0.04
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.41
Consensus pattern (17 bp):
GATAATTATTTAAACTA
Found at i:14580327 original size:18 final size:17
Alignment explanation
Indices: 14580274--14580329 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 17
14580264 ATGACAAAAC
14580274 AAATAGTGATAATTATTT
1 AAATAGT-ATAATTATTT
*
14580292 AAACTAG-ATAATTGTTT
1 AAA-TAGTATAATTATTT
*
14580309 AAATAGTCATAAATATTT
1 AAATAGT-ATAATTATTT
14580327 AAA
1 AAA
14580330 CTTGTTAAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
16 3 0.09
17 12 0.38
18 14 0.44
19 3 0.09
ACGTcount: A:0.48, C:0.04, G:0.09, T:0.39
Consensus pattern (17 bp):
AAATAGTATAATTATTT
Found at i:14580392 original size:180 final size:177
Alignment explanation
Indices: 14580092--14580586 Score: 518
Period size: 180 Copynumber: 2.7 Consensus size: 177
14580082 TTATAATAAT
* * * * *
14580092 ACAAAATGTCATAATTATTCGAAATATATAATTGTTAAAATAGTTAA-AACTATTTAAATTTGTT
1 ACAAAATGTCATAATTATT-TAAATAGATAATTGTTTAAATAG-TAATAAATATTTAAACTTGTT
** * * * ** *
14580156 TTGCAATCAGATTTAGCTTTTAAATCTTTT-TTCTTATATATTCAAGAATGTTAATAAATTAATA
64 AAGTAAT-AGATTTATCTTTTAAATCTTTTCTTATTA-AT-TTTTAGAATATTAATAAATTAATA
* * *
14580220 TTATTTTA-ATCAAATAAGCTTGTATGAATAAAAGCAATTGTTTTATGACAAA
126 TTATTTTATATCAAATAAACTTGTATGAACAAAA-CAATTATTTTATGACAAA
* *
14580272 AC-AAATAGTGATAATTATTTAAACTAGATAATTGTTTAAATAGTCATAAATATTTAAACTTGTT
1 ACAAAAT-GTCATAATTATTTAAA-TAGATAATTGTTTAAATAGTAATAAATATTTAAACTTGTT
14580336 AAGTAGATAGATTTATCTTTTAAATCCTTTTCTTATTAATTTTTAGAATATTAATAAATTAATAT
64 AAGTA-ATAGATTTATCTTTTAAAT-CTTTTCTTATTAATTTTTAGAATATTAATAAATTAATAT
* ** * * *
14580401 T-TCTTTATTTTGAATAAACTTGTATGAACGAAATAATTATTTTATGACGAA
127 TAT-TTTATATCAAATAAACTTGTATGAACAAAACAATTATTTTATGACAAA
* * * * *
14580452 ACAAAATGTCATAATTATTTGAAATAGATAATTATTTAAATAGTAATAACTATTTGAACTTGATC
1 ACAAAATGTCATAATTATTT-AAATAGATAATTGTTTAAATAGTAATAAATATTTAAACTTGTTA
*
14580517 AGTAAATAGATTTAT-TTTTAAAATTTTTTACTTATTAATTTTTTA-AATATTAATAAATTAATA
65 AGT-AATAGATTTATCTTTT-AAATCTTTT-CTTATTAA-TTTTTAGAATATTAATAAATTAATA
*
14580580 TAATTTT
126 TTATTTT
14580587 TTTTTAATAA
Statistics
Matches: 267, Mismatches: 33, Indels: 30
0.81 0.10 0.09
Matches are distributed among these distances:
179 18 0.07
180 201 0.75
181 43 0.16
182 5 0.02
ACGTcount: A:0.41, C:0.06, G:0.08, T:0.44
Consensus pattern (177 bp):
ACAAAATGTCATAATTATTTAAATAGATAATTGTTTAAATAGTAATAAATATTTAAACTTGTTAA
GTAATAGATTTATCTTTTAAATCTTTTCTTATTAATTTTTAGAATATTAATAAATTAATATTATT
TTATATCAAATAAACTTGTATGAACAAAACAATTATTTTATGACAAA
Found at i:14580484 original size:17 final size:18
Alignment explanation
Indices: 14580462--14580509 Score: 64
Period size: 17 Copynumber: 2.7 Consensus size: 18
14580452 ACAAAATGTC
14580462 ATAATTATTTGAAATAG-
1 ATAATTATTTGAAATAGA
14580479 ATAATTATTT-AAATAGTA
1 ATAATTATTTGAAATAG-A
*
14580497 ATAACTATTTGAA
1 ATAATTATTTGAA
14580510 CTTGATCAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
16 6 0.22
17 10 0.37
18 9 0.33
19 2 0.07
ACGTcount: A:0.48, C:0.02, G:0.08, T:0.42
Consensus pattern (18 bp):
ATAATTATTTGAAATAGA
Found at i:14580787 original size:20 final size:20
Alignment explanation
Indices: 14580743--14580787 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
14580733 ATCATGTAAG
*
14580743 TTTAAAAGCTCAAAATCCAT
1 TTTAAAAGCCCAAAATCCAT
* * *
14580763 GTTAAAGGCCCAAAATTCAT
1 TTTAAAAGCCCAAAATCCAT
14580783 TTTAA
1 TTTAA
14580788 GACCTAATTG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (20 bp):
TTTAAAAGCCCAAAATCCAT
Found at i:14581584 original size:9 final size:9
Alignment explanation
Indices: 14581571--14581621 Score: 50
Period size: 9 Copynumber: 5.6 Consensus size: 9
14581561 AACCCCAAAA
14581571 AAAAAGCACT
1 AAAAA-CACT
* *
14581581 AAAACCCCT
1 AAAAACACT
14581590 AAAAAC-CTT
1 AAAAACAC-T
14581599 AAAAACACT
1 AAAAACACT
*
14581608 AAAAAAACT
1 AAAAACACT
14581617 AAAAA
1 AAAAA
14581622 AAAAAATCCC
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
8 1 0.03
9 29 0.83
10 5 0.14
ACGTcount: A:0.65, C:0.22, G:0.02, T:0.12
Consensus pattern (9 bp):
AAAAACACT
Found at i:14581584 original size:22 final size:22
Alignment explanation
Indices: 14581550--14581594 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
14581540 AAACAATCTT
14581550 AAAACACTAAAAACCCCAAAAA
1 AAAACACTAAAAACCCCAAAAA
*
14581572 AAAAGCACT-AAAACCCCTAAAA
1 AAAA-CACTAAAAACCCCAAAAA
14581594 A
1 A
14581595 CCTTAAAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.64, C:0.27, G:0.02, T:0.07
Consensus pattern (22 bp):
AAAACACTAAAAACCCCAAAAA
Found at i:14581673 original size:18 final size:18
Alignment explanation
Indices: 14581652--14581698 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
14581642 AAAAAAAATT
14581652 AAAAACCTTAAAAGCCC-A
1 AAAAACCTTAAAA-CCCTA
*
14581670 AAAAAGCCTCAAAACCCTA
1 AAAAA-CCTTAAAACCCTA
*
14581689 AAAAGCCTTA
1 AAAAACCTTA
14581699 TAATCTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 12 0.50
19 12 0.50
ACGTcount: A:0.53, C:0.28, G:0.06, T:0.13
Consensus pattern (18 bp):
AAAAACCTTAAAACCCTA
Found at i:14581736 original size:9 final size:9
Alignment explanation
Indices: 14581724--14581839 Score: 55
Period size: 9 Copynumber: 12.8 Consensus size: 9
14581714 CAAAAATCTC
14581724 AAAACCTAAA
1 AAAACCT-AA
*
14581734 AAAATACTAA
1 AAAA-CCTAA
*
14581744 AAATCCTAA
1 AAAACCTAA
14581753 AAAA-C-AA
1 AAAACCTAA
*
14581760 AAAA--AAA
1 AAAACCTAA
*
14581767 AAAAGCCT-C
1 AAAA-CCTAA
14581776 AAAACCTCAA
1 AAAACCT-AA
*
14581786 AAAACCCTTA
1 AAAA-CCTAA
14581796 AAAACCTAA
1 AAAACCTAA
* *
14581805 ACAACCCAA
1 AAAACCTAA
14581814 AAAAGCCCTAA
1 AAAA--CCTAA
*
14581825 AACACC-AA
1 AAAACCTAA
14581833 AAAACCT
1 AAAACCT
14581840 TGGAAACCCT
Statistics
Matches: 80, Mismatches: 15, Indels: 23
0.68 0.13 0.19
Matches are distributed among these distances:
7 12 0.15
8 11 0.14
9 27 0.34
10 18 0.22
11 12 0.15
ACGTcount: A:0.63, C:0.25, G:0.02, T:0.10
Consensus pattern (9 bp):
AAAACCTAA
Found at i:14581736 original size:18 final size:18
Alignment explanation
Indices: 14581700--14581756 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
14581690 AAAGCCTTAT
* **
14581700 AATCTCAAAAACTCCAAA
1 AATCTCAAAACCTAAAAA
14581718 AATCTCAAAACCTAAAAA
1 AATCTCAAAACCTAAAAA
*
14581736 AATACTAAAAATCCTAAAAA
1 AAT-CTCAAAA-CCTAAAAA
14581756 A
1 A
14581757 CAAAAAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
18 18 0.55
19 6 0.18
20 9 0.27
ACGTcount: A:0.61, C:0.21, G:0.00, T:0.18
Consensus pattern (18 bp):
AATCTCAAAACCTAAAAA
Found at i:14581753 original size:20 final size:18
Alignment explanation
Indices: 14581715--14581756 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 18
14581705 CAAAAACTCC
*
14581715 AAAAATCTCAAAACCTAA
1 AAAAATCTAAAAACCTAA
14581733 AAAAATACTAAAAATCCTAA
1 AAAAAT-CTAAAAA-CCTAA
14581753 AAAA
1 AAAA
14581757 CAAAAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.29
19 6 0.29
20 9 0.43
ACGTcount: A:0.67, C:0.17, G:0.00, T:0.17
Consensus pattern (18 bp):
AAAAATCTAAAAACCTAA
Found at i:14581798 original size:19 final size:19
Alignment explanation
Indices: 14581765--14581811 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
14581755 AACAAAAAAA
*
14581765 AAAAAAGCCTC-AAAACCT
1 AAAAAACCCTCAAAAACCT
*
14581783 CAAAAAACCCTTAAAAACCT
1 -AAAAAACCCTCAAAAACCT
*
14581803 AAACAACCC
1 AAAAAACCC
14581812 AAAAAAGCCC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.55, C:0.32, G:0.02, T:0.11
Consensus pattern (19 bp):
AAAAAACCCTCAAAAACCT
Found at i:14581827 original size:47 final size:47
Alignment explanation
Indices: 14581765--14581881 Score: 116
Period size: 47 Copynumber: 2.5 Consensus size: 47
14581755 AACAAAAAAA
*
14581765 AAAAAAG-CCTCAAAACCTCAAAAAACCCTT-AAAAACCTAAACAACCC
1 AAAAAAGCCCT-AAAACCTCAAAAAA-CCTTGAAAAACCTAAACAACAC
* * * *
14581812 AAAAAAGCCCTAAAACAC-CAAAAAACCTTGGAAACCCTATATAACAC
1 AAAAAAGCCCTAAAAC-CTCAAAAAACCTTGAAAAACCTAAACAACAC
* *
14581859 AAAAAAGCCTTGAAACCT-AAAAA
1 AAAAAAGCCCTAAAACCTCAAAAA
14581882 TACTCAAAAA
Statistics
Matches: 59, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
46 10 0.17
47 45 0.76
48 4 0.07
ACGTcount: A:0.56, C:0.27, G:0.05, T:0.12
Consensus pattern (47 bp):
AAAAAAGCCCTAAAACCTCAAAAAACCTTGAAAAACCTAAACAACAC
Found at i:14581849 original size:27 final size:26
Alignment explanation
Indices: 14581819--14581880 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 26
14581809 CCCAAAAAAG
14581819 CCCTAAAACACCAAAAAA-CCTTGGAAA
1 CCCTAAAACA-CAAAAAAGCCTT-GAAA
14581846 CCCTATATAACACAAAAAAGCCTTGAAA
1 CCCTA-A-AACACAAAAAAGCCTTGAAA
14581874 -CCTAAAA
1 CCCTAAAA
14581881 ATACTCAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
25 2 0.06
26 1 0.03
27 9 0.28
28 12 0.38
29 8 0.25
ACGTcount: A:0.52, C:0.27, G:0.06, T:0.15
Consensus pattern (26 bp):
CCCTAAAACACAAAAAAGCCTTGAAA
Found at i:14582103 original size:19 final size:18
Alignment explanation
Indices: 14582068--14582108 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
14582058 AAACTCTAAA
**
14582068 AAAAAACCCTATGACCCT
1 AAAAAACCCTAAAACCCT
14582086 AAAAAACCCTGAAAACCCT
1 AAAAAACCCT-AAAACCCT
14582105 AAAA
1 AAAA
14582109 GCCCAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.54, C:0.29, G:0.05, T:0.12
Consensus pattern (18 bp):
AAAAAACCCTAAAACCCT
Found at i:14582291 original size:21 final size:20
Alignment explanation
Indices: 14582267--14582310 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
14582257 AAAAGCCCCG
*
14582267 AAACCCAAAAAAAACCTTAAA
1 AAACCCAAAAAAAA-CTCAAA
*
14582288 AAACCCTAAAAAAACTCAAA
1 AAACCCAAAAAAAACTCAAA
14582308 AAA
1 AAA
14582311 ATCTCGAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.68, C:0.23, G:0.00, T:0.09
Consensus pattern (20 bp):
AAACCCAAAAAAAACTCAAA
Found at i:14587341 original size:25 final size:25
Alignment explanation
Indices: 14587294--14587341 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
14587284 GATAAAAAAA
*
14587294 TTGCCCAACCTTAATCCCTGCACCC
1 TTGCCCAACCTTAATCCCAGCACCC
14587319 TTGCCCAACCTTCAA-CCCAGCAC
1 TTGCCCAACCTT-AATCCCAGCAC
14587342 AAACCTTCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 19 0.90
26 2 0.10
ACGTcount: A:0.23, C:0.48, G:0.08, T:0.21
Consensus pattern (25 bp):
TTGCCCAACCTTAATCCCAGCACCC
Found at i:14588604 original size:8 final size:8
Alignment explanation
Indices: 14588591--14588628 Score: 60
Period size: 8 Copynumber: 4.8 Consensus size: 8
14588581 AAAAAATTCA
14588591 AATAATAT
1 AATAATAT
14588599 AATAATAT
1 AATAATAT
14588607 AATAATAAT
1 AATAAT-AT
14588616 AA-AATAT
1 AATAATAT
14588623 AATAAT
1 AATAAT
14588629 TTTTTAGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 4 0.14
8 20 0.71
9 4 0.14
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (8 bp):
AATAATAT
Found at i:14599838 original size:19 final size:18
Alignment explanation
Indices: 14599795--14599838 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
14599785 TTAAAATCCT
* *
14599795 TTTTTCTTTCATTTTTTA
1 TTTTTATTTAATTTTTTA
14599813 TTCTTTATTTAATTTTATTA
1 TT-TTTATTTAATTTT-TTA
14599833 TTTTTA
1 TTTTTA
14599839 GATTAAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 2 0.09
19 15 0.68
20 5 0.23
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.75
Consensus pattern (18 bp):
TTTTTATTTAATTTTTTA
Found at i:14600118 original size:19 final size:19
Alignment explanation
Indices: 14600096--14600133 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
14600086 GTTTTCCCTA
*
14600096 GGGTTTTAGGTTTCATTTT
1 GGGTTTGAGGTTTCATTTT
*
14600115 GGGTTTGGGGTTTCATTTT
1 GGGTTTGAGGTTTCATTTT
14600134 AGAATTTCAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.08, C:0.05, G:0.32, T:0.55
Consensus pattern (19 bp):
GGGTTTGAGGTTTCATTTT
Found at i:14600472 original size:3 final size:3
Alignment explanation
Indices: 14600464--14600489 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
14600454 TTTTAAAATT
14600464 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
14600490 GTAGACACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:14600814 original size:24 final size:25
Alignment explanation
Indices: 14600763--14600815 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
14600753 AAAACCCAAG
* *
14600763 AAAAAAAAGAGTTTATTTCAAAATA
1 AAAAAAAAAAGTTTATTTCAAAACA
14600788 AAAAAAAAAAGTTT-TTGTC-AAACA
1 AAAAAAAAAAGTTTATT-TCAAAACA
14600812 AAAA
1 AAAA
14600816 GTAAAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 10 0.40
25 15 0.60
ACGTcount: A:0.62, C:0.06, G:0.08, T:0.25
Consensus pattern (25 bp):
AAAAAAAAAAGTTTATTTCAAAACA
Found at i:14606350 original size:3 final size:3
Alignment explanation
Indices: 14606284--14606335 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
14606274 TTATGACAAC
14606284 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14606332 TAT T
1 TAT T
14606336 TTCTTTTTTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:14606419 original size:21 final size:20
Alignment explanation
Indices: 14606376--14606424 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
14606366 ATTGTTGTTC
* *
14606376 TTTATCTTTATTTTTATTTTA
1 TTTAT-TTTATTTTAATTATA
14606397 TTTATTTTATTTATAATTATA
1 TTTATTTTATTT-TAATTATA
*
14606418 TTCATTT
1 TTTATTT
14606425 CTTCTATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.71
Consensus pattern (20 bp):
TTTATTTTATTTTAATTATA
Found at i:14607131 original size:16 final size:15
Alignment explanation
Indices: 14607095--14607129 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
14607085 CCATCTGGTA
14607095 TTTTTT-TTACTCTT
1 TTTTTTGTTACTCTT
*
14607109 TTTTTTGTTATTCTT
1 TTTTTTGTTACTCTT
14607124 TTTTTT
1 TTTTTT
14607130 TGCTTTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.06, C:0.09, G:0.03, T:0.83
Consensus pattern (15 bp):
TTTTTTGTTACTCTT
Found at i:14608396 original size:8 final size:8
Alignment explanation
Indices: 14608383--14608478 Score: 52
Period size: 8 Copynumber: 11.8 Consensus size: 8
14608373 AGTATTTTCC
14608383 TTATTTTT
1 TTATTTTT
14608391 TTATTTTT
1 TTATTTTT
*
14608399 TT-TATTT
1 TTATTTTT
*
14608406 ATATTTATAT
1 TTATTT-T-T
14608416 TTATTATTT
1 TTATT-TTT
*
14608425 TTA-TATT
1 TTATTTTT
* * *
14608432 ATATTATA
1 TTATTTTT
*
14608440 TTATTTAT
1 TTATTTTT
*
14608448 TTATTTAT
1 TTATTTTT
14608456 TTAGTTTTT
1 TTA-TTTTT
*
14608465 ATATTTTT
1 TTATTTTT
*
14608473 ATATTT
1 TTATTT
14608479 GATTTTTTAT
Statistics
Matches: 69, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
7 9 0.13
8 42 0.61
9 11 0.16
10 6 0.09
11 1 0.01
ACGTcount: A:0.25, C:0.00, G:0.01, T:0.74
Consensus pattern (8 bp):
TTATTTTT
Found at i:14608419 original size:25 final size:25
Alignment explanation
Indices: 14608390--14608470 Score: 92
Period size: 25 Copynumber: 3.1 Consensus size: 25
14608380 TCCTTATTTT
14608390 TTTATTTTTTTTATTTATATTTATA
1 TTTATTTTTTTTATTTATATTTATA
*
14608415 TTTATTATTTTTATATTATATTATATTA
1 TTTATTTTTTTTAT-TTATATT-TA-TA
* *
14608443 TTTA-TTTATTTATTTAGTTTTTATA
1 TTTATTTTTTTTATTTA-TATTTATA
14608468 TTT
1 TTT
14608471 TTATATTTGA
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
25 18 0.38
26 12 0.25
27 12 0.25
28 6 0.12
ACGTcount: A:0.26, C:0.00, G:0.01, T:0.73
Consensus pattern (25 bp):
TTTATTTTTTTTATTTATATTTATA
Found at i:14608477 original size:21 final size:20
Alignment explanation
Indices: 14608390--14608490 Score: 75
Period size: 21 Copynumber: 4.8 Consensus size: 20
14608380 TCCTTATTTT
14608390 TTTATTTTT-T-TTATTTATA
1 TTTATTTTTATATT-TTTATA
*
14608409 TTTATATTTATTATTTTTATA
1 TTTATTTTTA-TATTTTTATA
14608430 TTATATTATATTAT-TTATTTATTTA
1 TT-TATT-T-TTATATT-TTTA--TA
14608455 TTTAGTTTTTATATTTTTATA
1 TTTA-TTTTTATATTTTTATA
14608476 TTTGATTTTT-TATTT
1 TTT-ATTTTTATATTT
14608491 AATAGCCAAC
Statistics
Matches: 68, Mismatches: 2, Indels: 23
0.73 0.02 0.25
Matches are distributed among these distances:
19 8 0.12
20 5 0.07
21 19 0.28
22 8 0.12
23 14 0.21
24 8 0.12
25 6 0.09
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (20 bp):
TTTATTTTTATATTTTTATA
Found at i:14608477 original size:25 final size:24
Alignment explanation
Indices: 14608388--14608483 Score: 67
Period size: 25 Copynumber: 4.0 Consensus size: 24
14608378 TTTCCTTATT
*
14608388 TTTTTAT-TTTTTTTATTTATATTTA
1 TTTTTATATTTTTATA-TT-TATTTA
*
14608413 TATTTATTATTTTTATA-TTATATTA
1 TTTTTA-TATTTTTATATTTAT-TTA
* *
14608438 -TATTAT-TTATT-TATTTATTTA
1 TTTTTATATTTTTATATTTATTTA
14608459 GTTTTTATATTTTTATATTTGATTT
1 -TTTTTATATTTTTATATTT-ATTT
14608484 TTTATTTAAT
Statistics
Matches: 55, Mismatches: 7, Indels: 17
0.70 0.09 0.22
Matches are distributed among these distances:
21 5 0.09
22 8 0.15
23 6 0.11
24 10 0.18
25 14 0.25
26 5 0.09
27 7 0.13
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (24 bp):
TTTTTATATTTTTATATTTATTTA
Found at i:14608488 original size:33 final size:32
Alignment explanation
Indices: 14608386--14608491 Score: 98
Period size: 33 Copynumber: 3.3 Consensus size: 32
14608376 ATTTTCCTTA
14608386 TTTT-TTTATTTTT-T-TTATTTATATTTA-T
1 TTTTATTTATTTTTATATTATTTATATTTATT
*
14608414 ATTTA-TTATTTTTATATTATATTATATTATTTATT
1 TTTTATTTATTTTTATA-T-TATT-TA-TATTTATT
14608449 TATTTATTTAGTTTTTATATT-TTTATATTTGATT
1 T-TTTATTTA-TTTTTATATTATTTATATTT-ATT
14608483 TTTTATTTA
1 TTTTATTTA
14608492 ATAGCCAACA
Statistics
Matches: 64, Mismatches: 2, Indels: 19
0.75 0.02 0.22
Matches are distributed among these distances:
28 11 0.17
29 1 0.02
31 1 0.02
32 4 0.06
33 15 0.23
34 12 0.19
35 3 0.05
36 5 0.08
37 4 0.06
38 8 0.12
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.74
Consensus pattern (32 bp):
TTTTATTTATTTTTATATTATTTATATTTATT
Found at i:14609585 original size:23 final size:23
Alignment explanation
Indices: 14609559--14609606 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
14609549 TTATTTAGTG
*
14609559 ATGAATTTATAATAAATATACAT
1 ATGAATTTATAATAAATATAAAT
*
14609582 ATGAATTTATAATACATATAAAT
1 ATGAATTTATAATAAATATAAAT
14609605 AT
1 AT
14609607 TTATAAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.40
Consensus pattern (23 bp):
ATGAATTTATAATAAATATAAAT
Found at i:14609608 original size:19 final size:22
Alignment explanation
Indices: 14609562--14609612 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
14609552 TTTAGTGATG
14609562 AATTTATAATAAATATACATAT
1 AATTTATAATAAATATACATAT
*
14609584 GAATTTATAATACATATA-A-AT
1 -AATTTATAATAAATATACATAT
14609605 -ATTTATAA
1 AATTTATAA
14609613 ATTTGAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 8 0.30
21 2 0.07
22 1 0.04
23 16 0.59
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (22 bp):
AATTTATAATAAATATACATAT
Found at i:14609960 original size:25 final size:25
Alignment explanation
Indices: 14609932--14609979 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
14609922 ATAATAAGAA
*
14609932 GTTT-AAATTTGATTTAAAATTTATT
1 GTTTAAAATTTAATTT-AAATTTATT
14609957 GTTTAAAATTTAATTTAAATTTA
1 GTTTAAAATTTAATTTAAATTTA
14609980 ATTGAGTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (25 bp):
GTTTAAAATTTAATTTAAATTTATT
Found at i:14609978 original size:11 final size:12
Alignment explanation
Indices: 14609936--14609982 Score: 51
Period size: 14 Copynumber: 3.8 Consensus size: 12
14609926 TAAGAAGTTT
*
14609936 AAATTTGATTTA
1 AAATTTAATTTA
*
14609948 AAATTTATTGTTTA
1 AAATTTA--ATTTA
14609962 AAATTTAATTT-
1 AAATTTAATTTA
14609973 AAATTTAATT
1 AAATTTAATT
14609983 GAGTTTTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
11 10 0.33
12 9 0.30
14 11 0.37
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (12 bp):
AAATTTAATTTA
Found at i:14610558 original size:22 final size:23
Alignment explanation
Indices: 14610510--14610564 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 23
14610500 AATTATTTTA
14610510 AATTAAATATAAAAATAAATAAC
1 AATTAAATATAAAAATAAATAAC
* *
14610533 AATT-AATTTAAAAAGTAAA-AAT
1 AATTAAATATAAAAA-TAAATAAC
14610555 AATTTAAATA
1 AA-TTAAATA
14610565 AATATTAATC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 13 0.50
23 10 0.38
24 3 0.12
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (23 bp):
AATTAAATATAAAAATAAATAAC
Found at i:14611284 original size:12 final size:12
Alignment explanation
Indices: 14611247--14611307 Score: 56
Period size: 12 Copynumber: 5.1 Consensus size: 12
14611237 TAGATCTATC
14611247 TTATT-TTTTTA
1 TTATTATTTTTA
14611258 TTATTATTTTGTA
1 TTATTATTTT-TA
14611271 TT-TTATATTTTA
1 TTATTAT-TTTTA
*
14611283 TTATT-TTATTA
1 TTATTATTTTTA
*
14611294 TTTTTATTATTTA
1 TTATTATT-TTTA
14611307 T
1 T
14611308 CTGTTGATAT
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
11 13 0.32
12 15 0.37
13 13 0.32
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (12 bp):
TTATTATTTTTA
Found at i:14611289 original size:8 final size:8
Alignment explanation
Indices: 14611247--14611305 Score: 66
Period size: 8 Copynumber: 7.1 Consensus size: 8
14611237 TAGATCTATC
*
14611247 TTATTTTT
1 TTATTATT
14611255 TTATTATT
1 TTATTATT
*
14611263 ATTTTGTATT
1 -TTAT-TATT
14611273 TTA-TATT
1 TTATTATT
14611280 TTATTATT
1 TTATTATT
14611288 TTATTATTT
1 TTATTA-TT
14611297 TTATTATT
1 TTATTATT
14611305 T
1 T
14611306 ATCTGTTGAT
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
7 7 0.16
8 20 0.45
9 13 0.30
10 4 0.09
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (8 bp):
TTATTATT
Found at i:14611304 original size:25 final size:27
Alignment explanation
Indices: 14611256--14611305 Score: 54
Period size: 25 Copynumber: 2.0 Consensus size: 27
14611246 CTTATTTTTT
*
14611256 TATTATTATTTTGTA-TTTTATA-TTT
1 TATTATTATTATGTATTTTTATATTTT
14611281 TATTATT-TTAT-TATTTTTATTATTT
1 TATTATTATTATGTATTTTTA-TATTT
14611306 ATCTGTTGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
23 2 0.10
24 8 0.38
25 9 0.43
26 2 0.10
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (27 bp):
TATTATTATTATGTATTTTTATATTTT
Found at i:14611333 original size:30 final size:27
Alignment explanation
Indices: 14611315--14611380 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 27
14611305 TATCTGTTGA
14611315 TATATATATGTATTATTATTTATCTATT
1 TATATATAT-TATTATTATTTATCTATT
* *
14611343 TATATATATTATTATTTATCTAT-TAAT
1 TATATATATTATTA-TTATTTATCTATT
14611370 TA-ATATATTAT
1 TATATATATTAT
14611381 CCTTATTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 9 0.26
27 10 0.29
28 16 0.46
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (27 bp):
TATATATATTATTATTATTTATCTATT
Found at i:14611346 original size:24 final size:24
Alignment explanation
Indices: 14611319--14611380 Score: 88
Period size: 24 Copynumber: 2.5 Consensus size: 24
14611309 TGTTGATATA
*
14611319 TATATGTATTATTATTTATCTATT
1 TATATATATTATTATTTATCTATT
14611343 TATATATATTATTATTTATCTATT
1 TATATATATTATTATTTATCTATT
*
14611367 AATTAATATATTAT
1 TA-T-ATATATTAT
14611381 CCTTATTATT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
24 24 0.71
25 1 0.03
26 9 0.26
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.60
Consensus pattern (24 bp):
TATATATATTATTATTTATCTATT
Found at i:14612003 original size:19 final size:18
Alignment explanation
Indices: 14611978--14612019 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
14611968 GTTTTTAGAG
14611978 AGAAGAGAAAGAAGAGGAA
1 AGAAGAGAAAG-AGAGGAA
* *
14611997 GGAAGAGAGAGAGAGGAA
1 AGAAGAGAAAGAGAGGAA
14612015 AGAAG
1 AGAAG
14612020 GGTTCCGCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (18 bp):
AGAAGAGAAAGAGAGGAA
Found at i:14612350 original size:6 final size:6
Alignment explanation
Indices: 14612339--14612410 Score: 62
Period size: 6 Copynumber: 12.2 Consensus size: 6
14612329 AATTGTTTAA
* * *
14612339 TATTTT TATTTT TATTTA TCTTTT TA--TT TATTTT CATTTT TA-TTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
14612384 TATTATT TATTATT T-TATTT TATTTT T
1 TATT-TT TATT-TT TAT-TTT TATTTT T
14612411 TAAATAAAAT
Statistics
Matches: 54, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
4 4 0.07
5 5 0.09
6 33 0.61
7 12 0.22
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (6 bp):
TATTTT
Found at i:14612362 original size:12 final size:11
Alignment explanation
Indices: 14612343--14612412 Score: 72
Period size: 12 Copynumber: 6.0 Consensus size: 11
14612333 GTTTAATATT
14612343 TTTA-TTTTTA
1 TTTATTTTTTA
14612353 TTTATCTTTTTA
1 TTTAT-TTTTTA
14612365 TTTATTTTCATT-
1 TTTATTTT--TTA
14612377 TTTATTTTATTA
1 TTTATTTT-TTA
14612389 TTTATTATTTTA
1 TTTATT-TTTTA
14612401 TTTTATTTTTTA
1 -TTTATTTTTTA
14612413 AATAAAATTC
Statistics
Matches: 53, Mismatches: 0, Indels: 12
0.82 0.00 0.18
Matches are distributed among these distances:
10 4 0.08
11 6 0.11
12 33 0.62
13 10 0.19
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTATTTTTTA
Found at i:14612377 original size:28 final size:25
Alignment explanation
Indices: 14612342--14612408 Score: 82
Period size: 28 Copynumber: 2.6 Consensus size: 25
14612332 TGTTTAATAT
*
14612342 TTTTATTTTTATTTATCTTTTTATTTA
1 TTTTATTTTTATTTAT-TATTTA-TTA
14612369 TTTTCATTTTTATTTTATTATTTATTA
1 TTTT-ATTTTTA-TTTATTATTTATTA
14612396 TTTTA-TTTTATTT
1 TTTTATTTTTATTT
14612409 TTTAAATAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
24 3 0.08
25 5 0.14
26 1 0.03
27 11 0.30
28 12 0.32
29 5 0.14
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (25 bp):
TTTTATTTTTATTTATTATTTATTA
Found at i:14612386 original size:5 final size:5
Alignment explanation
Indices: 14612342--14612409 Score: 50
Period size: 5 Copynumber: 12.8 Consensus size: 5
14612332 TGTTTAATAT
*
14612342 TTTTA TTTT- TATTTA TCTTTT TATTTA TTTTCA TTTTTA TTTTA TTATT-
1 TTTTA TTTTA T-TTTA T-TTTA T-TTTA TTTT-A -TTTTA TTTTA TT-TTA
*
14612391 TATTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTT
14612410 TTAAATAAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
4 3 0.06
5 31 0.61
6 13 0.25
7 4 0.08
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:14612391 original size:20 final size:19
Alignment explanation
Indices: 14612360--14612411 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 19
14612350 TTATTTATCT
14612360 TTTTATTTATTTTCATTTTTA
1 TTTTA-TTATTTTCA-TTTTA
*
14612381 TTTTATTATTTATTATTTTA
1 TTTTATTATTT-TCATTTTA
14612401 TTTTATT-TTTT
1 TTTTATTATTTT
14612412 AAATAAAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 1 0.03
19 3 0.10
20 18 0.62
21 7 0.24
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTTATTATTTTCATTTTA
Found at i:14612400 original size:36 final size:35
Alignment explanation
Indices: 14612340--14612409 Score: 99
Period size: 36 Copynumber: 2.0 Consensus size: 35
14612330 ATTGTTTAAT
14612340 ATTTTTATTTTTATTTATCTTTTTA-TTTATTTTC
1 ATTTTTATTTTTATTTATCTTTTTATTTTATTTTC
14612374 ATTTTTATTTTATTATTTAT-TATTTTATTTTATTTT
1 ATTTTTA-TTT-TTATTTATCT-TTTTATTTTATTTT
14612410 TTAAATAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
34 7 0.22
35 4 0.12
36 13 0.41
37 8 0.25
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (35 bp):
ATTTTTATTTTTATTTATCTTTTTATTTTATTTTC
Found at i:14612516 original size:120 final size:119
Alignment explanation
Indices: 14612392--14612703 Score: 337
Period size: 120 Copynumber: 2.6 Consensus size: 119
14612382 TTTATTATTT
* * * * *
14612392 ATTATTTTATTTTATTTTTTAAATAAA-ATTCAAAAAAATTTATTTTTGAGGAAAAGTTGAAAGT
1 ATTATTTAATTTT-TTTTTAAAATAAATTTTCAAAAAAA--AAATTTTGAGGAAAAGTTGAAAGT
* * * * *
14612456 ATCAATTTTCCTCGAAATTAAAAGTTTC-CAAAAAATA-TTTTTGAGAAAAAGTTGAA
63 ATCAATTTTCCTCAAAAAT-AAAGTTTCAAAAAAAAAAGATTTTGAGAAAAAGTTGAA
* *
14612512 ATTA-TCAA-TTTTTCTTAAGAATAAATTTTCAAAACAAAAAAGTTTTGAGGAAAAGTTGAAAGT
1 ATTATTTAATTTTTTTTTAA-AATAAATTTTCAAAA-AAAAAA-TTTTGAGGAAAAGTTGAAAGT
* * *
14612575 ATCAATTTTTCTTAAAAATAAATTTTCAAAAAAAAAAGATTTTGAGAAAAAGTTGAA
63 ATCAATTTTCCTCAAAAATAAAGTTTCAAAAAAAAAAGATTTTGAGAAAAAGTTGAA
* * * * *
14612632 AGTATTCAATTTTTCTTAAAAATAAATTTTCAAAAAAAAAGATTTTGAGAAAAAGTTGAAAGTAT
1 ATTATTTAATTTTTTTTTAAAATAAATTTTCAAAAAAAAA-ATTTTGAGGAAAAGTTGAAAGTAT
14612697 CAATTTT
65 CAATTTT
14612704 TCCTGCACAA
Statistics
Matches: 163, Mismatches: 20, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
117 5 0.03
118 17 0.10
119 52 0.32
120 62 0.38
121 20 0.12
122 7 0.04
ACGTcount: A:0.46, C:0.06, G:0.10, T:0.38
Consensus pattern (119 bp):
ATTATTTAATTTTTTTTTAAAATAAATTTTCAAAAAAAAAATTTTGAGGAAAAGTTGAAAGTATC
AATTTTCCTCAAAAATAAAGTTTCAAAAAAAAAAGATTTTGAGAAAAAGTTGAA
Found at i:14612568 original size:60 final size:59
Alignment explanation
Indices: 14612435--14612705 Score: 375
Period size: 60 Copynumber: 4.5 Consensus size: 59
14612425 AAAAATTTAT
* * ** * * * * *
14612435 TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAAGTTTCCAAAAAATA-T
1 TTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAATTTTCAAAAAAAAAGA
* *
14612494 TTTTGAGAAAAAGTTGAAATTATCAATTTTTCTTAAGAATAAATTTTCAAAACAAAAA-A
1 TTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAA-AAAAAGA
*
14612553 GTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAAAAAAGA
1 -TTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTC-AAAAAAAAAGA
14612614 TTTTGAGAAAAAGTTGAAAGTATTCAATTTTTCTTAAAAATAAATTTTCAAAAAAAAAGA
1 TTTTGAGAAAAAGTTGAAAGTA-TCAATTTTTCTTAAAAATAAATTTTCAAAAAAAAAGA
14612674 TTTTGAGAAAAAGTTGAAAGTATCAATTTTTC
1 TTTTGAGAAAAAGTTGAAAGTATCAATTTTTC
14612706 CTGCACAAAA
Statistics
Matches: 192, Mismatches: 15, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
58 10 0.05
59 47 0.24
60 104 0.54
61 31 0.16
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.35
Consensus pattern (59 bp):
TTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAAAAAGA
Found at i:14617447 original size:63 final size:63
Alignment explanation
Indices: 14617374--14617503 Score: 197
Period size: 63 Copynumber: 2.1 Consensus size: 63
14617364 TGGTGCTGAG
* * * *
14617374 AAGCTTATGAACGATGACCAAGTGATAGATGATGAAATTTGTTTTGAAATGGCTAGTATTGAA
1 AAGCTTATGAACAATGACCAAGTGACAGAAGATGAAATTTATTTTGAAATGGCTAGTATTGAA
* * *
14617437 AAGCTTATGAACAATGACCAAGTGACAGAAGATGAAATTTATTTTGAAATGGTTAGTGTTGAT
1 AAGCTTATGAACAATGACCAAGTGACAGAAGATGAAATTTATTTTGAAATGGCTAGTATTGAA
14617500 AAGC
1 AAGC
14617504 CTGGCATGTG
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (63 bp):
AAGCTTATGAACAATGACCAAGTGACAGAAGATGAAATTTATTTTGAAATGGCTAGTATTGAA
Found at i:14618158 original size:43 final size:42
Alignment explanation
Indices: 14618111--14618192 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 42
14618101 GCCTTTGAAC
* *
14618111 TCAAATGAGAAGCTTTCA-ATTTTTGGATGTGAATCTCCAAAAT
1 TCAAATGAAAAGC-TTCAGATTTTTGGATATGAAT-TCCAAAAT
14618154 TCAAATGAAAAGCTTCAGATTTTTGGATATGAATTCCAA
1 TCAAATGAAAAGCTTCAGATTTTTGGATATGAATTCCAA
14618193 GTTTGCCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
42 9 0.25
43 27 0.75
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.34
Consensus pattern (42 bp):
TCAAATGAAAAGCTTCAGATTTTTGGATATGAATTCCAAAAT
Found at i:14618602 original size:41 final size:41
Alignment explanation
Indices: 14618487--14618739 Score: 228
Period size: 42 Copynumber: 6.1 Consensus size: 41
14618477 ACTGTCAATA
*
14618487 AGCAATTTATTTTTCCAAAGTTTCGTT-A-CCTCT-ATTTAGAAG
1 AGCAATTTATTTTT-CAAAG--TCGTTGAGCCTCTGA-TTAGAGG
* * * ** * *
14618529 AGCAATTTACTTTCCAAAAGTTGAGGTGCCTCTGTTTAGAGG
1 AGCAATTTATTTTTC-AAAGTCGTTGAGCCTCTGATTAGAGG
*
14618571 AGCAATTTATTTTTCAAAGTTGTTGAGCCTCTGATTAGAGG
1 AGCAATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGG
** * *
14618612 AGCCGTTTTATTTTTCAAAGTCGTTAAGCCTCTGATTAAAGG
1 AG-CAATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGG
**
14618654 AGCCGTTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGG
1 AGCAATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGG
* * *
14618695 A--ACTTTATTCATTTTCAAAGTCGTTGAGCCTCTGCTTAGAAG
1 AGCAATTTA-T--TTTTCAAAGTCGTTGAGCCTCTGATTAGAGG
14618737 AGC
1 AGC
14618740 TTTGATCAAA
Statistics
Matches: 174, Mismatches: 27, Indels: 18
0.79 0.12 0.08
Matches are distributed among these distances:
39 4 0.02
40 3 0.02
41 61 0.35
42 106 0.61
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.38
Consensus pattern (41 bp):
AGCAATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGG
Found at i:14618642 original size:42 final size:42
Alignment explanation
Indices: 14618556--14619088 Score: 245
Period size: 42 Copynumber: 12.5 Consensus size: 42
14618546 AAGTTGAGGT
* ** *
14618556 GCCTCTGTTTAGAGGAG-CAATTTATTTTTCAAAGTTGTTGA
1 GCCTCTGATTAGAGGAGCCGTTTTATTTTTCAAAGTCGTTGA
*
14618597 GCCTCTGATTAGAGGAGCCGTTTTATTTTTCAAAGTCGTTAA
1 GCCTCTGATTAGAGGAGCCGTTTTATTTTTCAAAGTCGTTGA
*
14618639 GCCTCTGATTAAAGGAGCCG-TTTATTTTTCAAAGTCGTTGA
1 GCCTCTGATTAGAGGAGCCGTTTTATTTTTCAAAGTCGTTGA
* *
14618680 GCCTCTGATTAGAGGA-ACTTTATTCA-TTTTCAAAGTCGTTGA
1 GCCTCTGATTAGAGGAGCCGTT-TT-ATTTTTCAAAGTCGTTGA
* * *** **** *
14618722 GCCTCTGCTTAGAAGAG-C-TTTGATCAAAATTTAAAAAAAAAAAAATTTA
1 GCCTCTGATTAGAGGAGCCGTTT--T----ATTT---TTCAAAGTCGTTGA
* * ** *
14618771 -CCTCTGTTTAGAAGAGCTTTGTTTATGTTTCTTAAAGTCGTTGA
1 GCCTCTGATTAGAGGAGCCGT-TTTAT-TTT-TCAAAGTCGTTGA
* * *** ****
14618815 GCCTCT-ACTTAGAGGAG-CATTGATCAAATTTAAAAAAAAAATT-A
1 GCCTCTGA-TTAGAGGAGCCGTT--T--TATTTTTCAAAGTCGTTGA
* * ** * *
14618859 -CCTCTGTTTAGAAGAGTTTTGTTTATGTTTTTCAAAGTTGTTGA
1 GCCTCTGATTAGAGGAG--CCGTTT-TATTTTTCAAAGTCGTTGA
* * * * *
14618903 GCCTCTTATTAGAGGAGCCATTTTATTTTTCAAAATTGTTAA
1 GCCTCTGATTAGAGGAGCCGTTTTATTTTTCAAAGTCGTTGA
* *
14618945 GCTTCTAATTAGAGGAGCCG-TTTATTTTTCAAAGTCGTTGA
1 GCCTCTGATTAGAGGAGCCGTTTTATTTTTCAAAGTCGTTGA
*
14618986 GCCTTTGATTAGAGGAG-C--TTTATTCATTTCCAAAGTCGTTGA
1 GCCTCTGATTAGAGGAGCCGTTTTATT--TTT-CAAAGTCGTTGA
* * * *
14619028 GCTTCTGATTAGAGGA-ACTTTATTCA-TTTTCAAAGTCGTTAA
1 GCCTCTGATTAGAGGAGCCGTT-TT-ATTTTTCAAAGTCGTTGA
*
14619070 GCCTCTGCTTAGAGGAGCC
1 GCCTCTGATTAGAGGAGCC
14619089 TTGATCAAAT
Statistics
Matches: 372, Mismatches: 80, Indels: 78
0.70 0.15 0.15
Matches are distributed among these distances:
39 6 0.02
40 3 0.01
41 89 0.24
42 158 0.42
43 31 0.08
44 11 0.03
45 38 0.10
46 9 0.02
47 2 0.01
48 15 0.04
49 7 0.02
50 1 0.00
51 2 0.01
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (42 bp):
GCCTCTGATTAGAGGAGCCGTTTTATTTTTCAAAGTCGTTGA
Found at i:14618710 original size:83 final size:83
Alignment explanation
Indices: 14618556--14618728 Score: 242
Period size: 83 Copynumber: 2.1 Consensus size: 83
14618546 AAGTTGAGGT
* * * *
14618556 GCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTGTTGAGCCTCTGATTAGAGGAGCCGTTTT
1 GCCTCTGATTAAAGGAGCAATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGACGTTTT
14618621 ATTTTTCAAAGTCGTTAA
66 ATTTTTCAAAGTCGTTAA
** *
14618639 GCCTCTGATTAAAGGAGCCGTTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGA-ACTTTAT
1 GCCTCTGATTAAAGGAGCAATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGACGTT-T
*
14618703 TCA-TTTTCAAAGTCGTTGA
65 T-ATTTTTCAAAGTCGTTAA
14618722 GCCTCTG
1 GCCTCTG
14618729 CTTAGAAGAG
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
82 3 0.04
83 76 0.95
84 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38
Consensus pattern (83 bp):
GCCTCTGATTAAAGGAGCAATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGACGTTTT
ATTTTTCAAAGTCGTTAA
Found at i:14618888 original size:88 final size:91
Alignment explanation
Indices: 14618706--14618920 Score: 314
Period size: 88 Copynumber: 2.4 Consensus size: 91
14618696 ACTTTATTCA
* * *
14618706 TTTTCAAAGTCGTTGAGCCTCTGCTTAGAAGAGCTTTGATCAAAATTTAAAAAAAAAAAAATTTA
1 TTTTCAAAGTCGTTGAGCCTCTACTTAGAGGAGCATTGATCAAAATTT--AAAAAAAAAAATTTA
14618771 CCTCTGTTTAGAAGAGCTTTGTTTATGT
64 CCTCTGTTTAGAAGAGCTTTGTTTATGT
14618799 TTCTT-AAAGTCGTTGAGCCTCTACTTAGAGGAGCATTGATC-AAATTT-AAAAAAAAAA-TTAC
1 TT-TTCAAAGTCGTTGAGCCTCTACTTAGAGGAGCATTGATCAAAATTTAAAAAAAAAAATTTAC
*
14618860 CTCTGTTTAGAAGAGTTTTGTTTATGT
65 CTCTGTTTAGAAGAGCTTTGTTTATGT
*
14618887 TTTTCAAAGTTGTTGAGCCTCTTA-TTAGAGGAGC
1 TTTTCAAAGTCGTTGAGCCTC-TACTTAGAGGAGC
14618921 CATTTTATTT
Statistics
Matches: 114, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
87 2 0.02
88 57 0.50
89 12 0.11
92 6 0.05
93 35 0.31
94 2 0.02
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (91 bp):
TTTTCAAAGTCGTTGAGCCTCTACTTAGAGGAGCATTGATCAAAATTTAAAAAAAAAAATTTACC
TCTGTTTAGAAGAGCTTTGTTTATGT
Found at i:14618997 original size:83 final size:82
Alignment explanation
Indices: 14618880--14619090 Score: 225
Period size: 83 Copynumber: 2.5 Consensus size: 82
14618870 AAGAGTTTTG
* *
14618880 TTTATGTTTTTCAAAGTTGTTGAGCCTCTT-ATTAGAGGAGCCATTTTATT-TTT-CAAAATTGT
1 TTTAT-TTTTTCAAAGTCGTTGAGCCT-TTGATTAGAGGAGCC--TTTATTATTTCCAAAATCGT
*
14618942 TAAGCTTCTAATTAGAGGAGCC
62 TAAGCTTCTAATTAGAGGA-AC
* *
14618964 GTTTA-TTTTTCAAAGTCGTTGAGCCTTTGATTAGAGGAG-CTTTATTCATTTCCAAAGTCGTTG
1 -TTTATTTTTTCAAAGTCGTTGAGCCTTTGATTAGAGGAGCCTTTATT-ATTTCCAAAATCGTTA
*
14619027 AGCTTCTGATTAGAGGAAC
64 AGCTTCTAATTAGAGGAAC
* * *
14619046 TTTATTCATTTTCAAAGTCGTTAAGCCTCTGCTTAGAGGAGCCTT
1 TTTATT--TTTTCAAAGTCGTTGAGCCTTTGATTAGAGGAGCCTT
14619091 GATCAAATCT
Statistics
Matches: 109, Mismatches: 9, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
80 6 0.06
81 4 0.04
82 8 0.07
83 54 0.50
84 30 0.28
85 7 0.06
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.41
Consensus pattern (82 bp):
TTTATTTTTTCAAAGTCGTTGAGCCTTTGATTAGAGGAGCCTTTATTATTTCCAAAATCGTTAAG
CTTCTAATTAGAGGAAC
Found at i:14619302 original size:12 final size:12
Alignment explanation
Indices: 14619273--14619433 Score: 56
Period size: 12 Copynumber: 13.4 Consensus size: 12
14619263 TAGGTCCACC
14619273 TTATT-TTTTTA
1 TTATTATTTTTA
14619284 TTATTATTTTATA
1 TTATTATTTT-TA
*
14619297 TT-TTA-TATT-
1 TTATTATTTTTA
14619306 TTATTATTTTTA
1 TTATTATTTTTA
*
14619318 TTATTTATCTGTTGA
1 TTA-TTAT-T-TTTA
* *
14619333 -TATATATATGTA
1 TTAT-TATTTTTA
14619345 TTATTATTATTTA
1 TTATTATT-TTTA
* *
14619358 -T-CTATTTATA
1 TTATTATTTTTA
14619368 TATATTATTATTTA
1 T-TATTATT-TTTA
* *
14619382 TCTATTA-ATTAA
1 T-TATTATTTTTA
**
14619394 TATATTATCCTTA
1 T-TATTATTTTTA
14619407 TTATTATCTTTT-
1 TTATTAT-TTTTA
14619419 TT-TTATTTTT-
1 TTATTATTTTTA
14619429 TTATT
1 TTATT
14619434 TTATCATTTT
Statistics
Matches: 111, Mismatches: 21, Indels: 36
0.66 0.12 0.21
Matches are distributed among these distances:
9 2 0.02
10 13 0.12
11 20 0.18
12 34 0.31
13 24 0.22
14 15 0.14
15 3 0.03
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (12 bp):
TTATTATTTTTA
Found at i:14619312 original size:17 final size:16
Alignment explanation
Indices: 14619278--14619323 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
14619268 CCACCTTATT
14619278 TTTTTATTATTATTTTA
1 TTTTTATTATT-TTTTA
14619295 TATTTTA-TATTTTATTA
1 T-TTTTATTATTTT-TTA
14619312 TTTTTATTATTT
1 TTTTTATTATTT
14619324 ATCTGTTGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
16 7 0.27
17 14 0.54
18 5 0.19
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTATTATTTTTTA
Found at i:14619337 original size:33 final size:33
Alignment explanation
Indices: 14619284--14619380 Score: 101
Period size: 33 Copynumber: 3.0 Consensus size: 33
14619274 TATTTTTTTA
* *
14619284 TTATTATTT-TATATT-TTATATTTTATTATTT
1 TTATTATTTATCTATTGATATATTTTATTATTT
* * *
14619315 TTATTATTTATCTGTTGATATA-TATATGTATTA
1 TTATTATTTATCTATTGATATATTTTAT-TATTT
* *
14619348 TTATTATTTATCTATTTATATATATTATTATTT
1 TTATTATTTATCTATTGATATATTTTATTATTT
14619381 ATCTATTAAT
Statistics
Matches: 52, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
31 9 0.17
32 8 0.15
33 32 0.62
34 3 0.06
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (33 bp):
TTATTATTTATCTATTGATATATTTTATTATTT
Found at i:14619365 original size:8 final size:7
Alignment explanation
Indices: 14619280--14619411 Score: 53
Period size: 8 Copynumber: 18.3 Consensus size: 7
14619270 ACCTTATTTT
14619280 TTTATTA
1 TTTATTA
14619287 -TTATT-
1 TTTATTA
14619292 TTATATT-
1 TT-TATTA
*
14619299 TTATATTT
1 TT-TATTA
14619307 TATTATT-
1 T-TTATTA
14619314 TTTATTA
1 TTTATTA
*
14619321 TTTATCTG
1 TTTAT-TA
*
14619329 TTGA-TA
1 TTTATTA
*
14619335 TATA-TA
1 TTTATTA
*
14619341 TGTATTA
1 TTTATTA
14619348 -TTATTA
1 TTTATTA
14619354 TTTATCTA
1 TTTAT-TA
14619362 TTTATATA
1 TTTAT-TA
14619370 TATTATTA
1 T-TTATTA
14619378 TTTATCTA
1 TTTAT-TA
*
14619386 TTAATTAA
1 TTTATT-A
*
14619394 TATATTA
1 TTTATTA
14619401 TCCTTATTA
1 T--TTATTA
14619410 TT
1 TT
14619412 ATCTTTTTTT
Statistics
Matches: 99, Mismatches: 12, Indels: 28
0.71 0.09 0.20
Matches are distributed among these distances:
6 24 0.24
7 31 0.31
8 33 0.33
9 11 0.11
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (7 bp):
TTTATTA
Found at i:14619378 original size:24 final size:26
Alignment explanation
Indices: 14619346--14619401 Score: 89
Period size: 24 Copynumber: 2.2 Consensus size: 26
14619336 ATATATGTAT
*
14619346 TATTATTATTTATCTATTTA-T-ATA
1 TATTATTATTTATCTATTAATTAATA
14619370 TATTATTATTTATCTATTAATTAATA
1 TATTATTATTTATCTATTAATTAATA
14619396 TATTAT
1 TATTAT
14619402 CCTTATTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 19 0.66
25 1 0.03
26 9 0.31
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.61
Consensus pattern (26 bp):
TATTATTATTTATCTATTAATTAATA
Found at i:14619433 original size:57 final size:58
Alignment explanation
Indices: 14619304--14619433 Score: 133
Period size: 57 Copynumber: 2.3 Consensus size: 58
14619294 ATATTTTATA
* * *
14619304 TTTTATTATTTTTATTATTTATCTGTTGATATATATATGTATTATTATTATTTATCTAT
1 TTTTATT-TTTTTATTATTTATCTATTAATATATATATGTATCATTATTATTTATCTAT
* * * * *
14619363 TTATA-TATATTATTATTTATCTATTAAT-TAATATAT-TATCCTTATTA-TTATCTTTT
1 TTTTATTTTTTTATTATTTATCTATTAATAT-ATATATGTATCATTATTATTTATC-TAT
14619419 TTTTATTTTTTTATT
1 TTTTATTTTTTTATT
14619434 TTATCATTTT
Statistics
Matches: 57, Mismatches: 11, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
55 5 0.09
56 16 0.28
57 31 0.54
58 1 0.02
59 4 0.07
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.65
Consensus pattern (58 bp):
TTTTATTTTTTTATTATTTATCTATTAATATATATATGTATCATTATTATTTATCTAT
Found at i:14620317 original size:17 final size:17
Alignment explanation
Indices: 14620295--14620329 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
14620285 CGTTCTCAGG
14620295 TTTTTTATTATTATTAT
1 TTTTTTATTATTATTAT
*
14620312 TTTTTTGTTATTATTAT
1 TTTTTTATTATTATTAT
14620329 T
1 T
14620330 ATATCAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (17 bp):
TTTTTTATTATTATTAT
Found at i:14620359 original size:16 final size:16
Alignment explanation
Indices: 14620339--14620417 Score: 57
Period size: 16 Copynumber: 5.3 Consensus size: 16
14620329 TATATCAAAA
14620339 ATTTTTA-ATATTTTT
1 ATTTTTATATATTTTT
*
14620354 ATTTTTATTTATTTTT
1 ATTTTTATATATTTTT
*
14620370 A--TTTATCT-TTTTT
1 ATTTTTATATATTTTT
14620383 ATTTATT-T-TCATTTTT
1 ATTT-TTATAT-ATTTTT
*
14620399 A-TTTTATTTA-TTTT
1 ATTTTTATATATTTTT
14620413 ATTTT
1 ATTTT
14620418 ATTATTTAAT
Statistics
Matches: 53, Mismatches: 2, Indels: 18
0.73 0.03 0.25
Matches are distributed among these distances:
13 6 0.11
14 14 0.26
15 16 0.30
16 17 0.32
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (16 bp):
ATTTTTATATATTTTT
Found at i:14620364 original size:10 final size:10
Alignment explanation
Indices: 14620351--14620434 Score: 73
Period size: 10 Copynumber: 8.0 Consensus size: 10
14620341 TTTTAATATT
14620351 TTTATTTTTA
1 TTTATTTTTA
14620361 TTTATTTTTA
1 TTTATTTTTA
14620371 TTTATCTTTTTTA
1 TTTA---TTTTTA
*
14620384 TTTATTTTCA
1 TTTATTTTTA
*
14620394 TTTTTATTTTA
1 TTTAT-TTTTA
14620405 TTTA-TTTTA
1 TTTATTTTTA
14620414 TTTTATTATTTA
1 -TTTATT-TTTA
*
14620426 ATT-TTTTTA
1 TTTATTTTTA
14620435 AATAAAATTC
Statistics
Matches: 62, Mismatches: 5, Indels: 15
0.76 0.06 0.18
Matches are distributed among these distances:
9 9 0.15
10 29 0.47
11 10 0.16
12 4 0.06
13 10 0.16
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.77
Consensus pattern (10 bp):
TTTATTTTTA
Found at i:14620383 original size:13 final size:12
Alignment explanation
Indices: 14620355--14620434 Score: 76
Period size: 13 Copynumber: 6.5 Consensus size: 12
14620345 AATATTTTTA
14620355 TTTTTATTTA--
1 TTTTTATTTATT
14620365 TTTTTATTTATCT
1 TTTTTATTTAT-T
14620378 TTTTTATTTATT
1 TTTTTATTTATT
*
14620390 TTCATT-TTTATT
1 TT-TTTATTTATT
14620402 TTATTTATTTTATT
1 TT-TTTA-TTTATT
*
14620416 TTATTATTTAATT
1 TTTTTATTT-ATT
14620429 TTTTTA
1 TTTTTA
14620435 AATAAAATTC
Statistics
Matches: 58, Mismatches: 5, Indels: 11
0.78 0.07 0.15
Matches are distributed among these distances:
10 10 0.17
12 16 0.28
13 24 0.41
14 8 0.14
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTTTATTTATT
Found at i:14620387 original size:17 final size:17
Alignment explanation
Indices: 14620367--14620434 Score: 70
Period size: 17 Copynumber: 4.0 Consensus size: 17
14620357 TTTATTTATT
14620367 TTTATTTATCTTTTTTA
1 TTTATTTATCTTTTTTA
*
14620384 TTTATTT-TCATTTTTA
1 TTTATTTATCTTTTTTA
*
14620400 TTTTATTTATTTTATTTTA
1 -TTTATTTATCTT-TTTTA
14620419 -TTATTTAAT-TTTTTTA
1 TTTATTT-ATCTTTTTTA
14620435 AATAAAATTC
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
16 13 0.30
17 22 0.50
18 4 0.09
19 5 0.11
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTATTTATCTTTTTTA
Found at i:14620390 original size:39 final size:38
Alignment explanation
Indices: 14620347--14620431 Score: 109
Period size: 39 Copynumber: 2.2 Consensus size: 38
14620337 AAATTTTTAA
* *
14620347 TATTTTTATTTTTA-TTTATTTTTATTTATCTTTTTTATT
1 TATTTTTATTTTTATTTTATTTAT-TTTAT-TTTATTATT
*
14620386 TATTTTCATTTTTATTTTATTTATTTTATTTTATTATT
1 TATTTTTATTTTTATTTTATTTATTTTATTTTATTATT
14620424 TAATTTTT
1 T-ATTTTT
14620432 TTAAATAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
38 9 0.22
39 23 0.57
40 8 0.20
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (38 bp):
TATTTTTATTTTTATTTTATTTATTTTATTTTATTATT
Found at i:14620405 original size:5 final size:5
Alignment explanation
Indices: 14620350--14620420 Score: 62
Period size: 5 Copynumber: 14.4 Consensus size: 5
14620340 TTTTTAATAT
*
14620350 TTTTA TTTT- TATTTA TTTT- TATTTA TCTT- TTTTA -TTTA TTTTCA
1 TTTTA TTTTA T-TTTA TTTTA T-TTTA TTTTA TTTTA TTTTA TTTT-A
14620394 TTTTTA TTTTA -TTTA TTTTA TTTTA TT
1 -TTTTA TTTTA TTTTA TTTTA TTTTA TT
14620421 ATTTAATTTT
Statistics
Matches: 55, Mismatches: 2, Indels: 18
0.73 0.03 0.24
Matches are distributed among these distances:
4 13 0.24
5 34 0.62
6 4 0.07
7 4 0.07
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:14620409 original size:34 final size:34
Alignment explanation
Indices: 14620351--14620424 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 34
14620341 TTTTAATATT
*
14620351 TTTATTTTTATTTATTTTTATTTATCTT-TTTTA
1 TTTATTTTCATTTATTTTTATTTATCTTATTTTA
* *
14620384 TTTATTTTCATTTTTATTTTATTTATTTTATTTTA
1 TTTATTTTCATTTAT-TTTTATTTATCTTATTTTA
14620419 -TTATTT
1 TTTATTT
14620425 AATTTTTTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
33 13 0.36
34 18 0.50
35 5 0.14
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (34 bp):
TTTATTTTCATTTATTTTTATTTATCTTATTTTA
Found at i:14620520 original size:60 final size:58
Alignment explanation
Indices: 14620442--14620841 Score: 430
Period size: 60 Copynumber: 6.7 Consensus size: 58
14620432 TTAAATAAAA
* * *
14620442 TTCAAAAAAATTATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTAAGAATAAATT
1 TTCAAAAAAA-AAATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAGAATAAATT
* * * *
14620501 TTCAAAAAAAAAGGGTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAA-ATTAAAAGTT
1 TTCAAAAAAAAA--ATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT-TAAGAAT-AAA-TT
* * * * *
14620563 TTC-AAAAAATATTTTTGAGAAAAAGTTGAAAGTATTAATTTTCTTTAAGAATAAATT
1 TTCAAAAAAAAAATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAGAATAAATT
*
14620620 TTCAAAAAAAAAGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC-T-AGAAATTAAAAGTT
1 TTCAAAAAAAAAATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAG-AA-T-AAA-TT
* * * ** *
14620680 TTCCAAAAAATATTTTTGAAAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATT
1 TTCAAAAAAAAAATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAGAATAAATT
** * *
14620738 TAAAAAAAAAAAGATTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATT
1 TTCAAAAAAAAA-ATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAGAATAAATT
* *
14620797 TTCAAAAAAAAAAGATTTTGGGGAGAAGTTGAAAGTATCAATTTT
1 TTC-AAAAAAAAA-ATTTTGAGGAAAAGTTGAAAGTATCAATTTT
14620842 TTCTGCACAA
Statistics
Matches: 290, Mismatches: 36, Indels: 29
0.82 0.10 0.08
Matches are distributed among these distances:
56 2 0.01
57 8 0.03
58 53 0.18
59 92 0.32
60 114 0.39
61 15 0.05
62 6 0.02
ACGTcount: A:0.47, C:0.06, G:0.13, T:0.34
Consensus pattern (58 bp):
TTCAAAAAAAAAATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAGAATAAATT
Found at i:14620576 original size:119 final size:119
Alignment explanation
Indices: 14620446--14620841 Score: 541
Period size: 119 Copynumber: 3.3 Consensus size: 119
14620436 ATAAAATTCA
* *
14620446 AAAAAATTATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTAAGAATAAATTTTCAAAAAAA
1 AAAAAA-TATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAGAATAAATTTTCAAAAAAA
* *
14620511 AAGGGTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAAGTTTT-C
65 AA-GGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTAGAAATTAAAAGTTTTCC
* *
14620566 AAAAAATATTTTTGAGAAAAAGTTGAAAGTATTAATTTTCTTTAAGAATAAATTTTCAAAAAAAA
1 AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAGAATAAATTTTCAAAAAAAA
14620631 A-GTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTAGAAATTAAAAGTTTTCC
66 AGGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTAGAAATTAAAAGTTTTCC
* * **
14620684 AAAAAATATTTTTGAAAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTAAAAAAAAAA
1 AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAGAATAAATTTTCAAAAAAAA
* * * *
14620749 AGATTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTA-AAAAT-AAA-TTTTCAA
66 AGGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC-TAGAAATTAAAAGTTTTC-C
* * * * *
14620802 AAAAAAAAGATTTTGGGGAGAAGTTGAAAGTATCAATTTT
1 AAAAAATA-TTTTTGAGAAAAAGTTGAAAGTATCAATTTT
14620842 TTCTGCACAA
Statistics
Matches: 249, Mismatches: 22, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
117 53 0.21
118 71 0.29
119 117 0.47
120 8 0.03
ACGTcount: A:0.47, C:0.06, G:0.13, T:0.34
Consensus pattern (119 bp):
AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAGAATAAATTTTCAAAAAAAA
AGGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTAGAAATTAAAAGTTTTCC
Found at i:14620758 original size:177 final size:175
Alignment explanation
Indices: 14620423--14620841 Score: 485
Period size: 177 Copynumber: 2.4 Consensus size: 175
14620413 ATTTTATTAT
* * * *
14620423 TTAATTTT-TTT-AAATAAA-ATTCAAAAAAATTATTTTTGAGGAAAAGTTGAAAATATCAATTT
1 TTAATTTTCTTTAAAATAAATTTTCAAAAAAA-AAGTTTTGAGGAAAAGTTGAAAGTATCAATTT
** *
14620485 TCCTTAAGAATAAATTTTCAAAAAAAAAGGGTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTC
65 TCCTTAAGAATAAATTTTCAAAAAAAAA-GGTTTTGAAAAAAAGTTGAAAGTATCAATTTTCCTC
* * ** * *
14620550 GAAATTAAAAGTTTTCAAAAAATATTTTTGAGAAAAAGTTGAAAGTA
129 AAAAATAAAAGTTTAAAAAAAAAAATTTTGAGAAAAAGTTGAAAGTA
14620597 TTAATTTTCTTTAAGAATAAATTTTCAAAAAAAAAGTTTTGAGGAAAAGTTGAAAGTATCAATTT
1 TTAATTTTCTTTAA-AATAAATTTTCAAAAAAAAAGTTTTGAGGAAAAGTTGAAAGTATCAATTT
* * *
14620662 TCC-T-AGAAATTAAAAGTTTTCCAAAAAATA-TTTTTGAAAAAAAGTTGAAAGTATCAATTTTC
65 TCCTTAAG-AA-T-AAA-TTTTCAAAAAAAAAGGTTTTGAAAAAAAGTTGAAAGTATCAATTTTC
*
14620724 CTTAAAAAT-AAA-TTTAAAAAAAAAAAGATTTTGAGAAAAAGTTGAAAGTA
126 CTCAAAAATAAAAGTTT-AAAAAAAAAA-ATTTTGAGAAAAAGTTGAAAGTA
* * * *
14620774 TCAATTTTCCTTAAAAATAAATTTTCAAAAAAAAAAGATTTTGGGGAGAAGTTGAAAGTATCAAT
1 TTAATTTT-CTTTAAAATAAATTTTC-AAAAAAAAAG-TTTTGAGGAAAAGTTGAAAGTATCAAT
14620839 TTT
63 TTT
14620842 TTCTGCACAA
Statistics
Matches: 211, Mismatches: 21, Indels: 21
0.83 0.08 0.08
Matches are distributed among these distances:
174 8 0.04
175 8 0.04
176 14 0.07
177 113 0.54
178 28 0.13
179 40 0.19
ACGTcount: A:0.47, C:0.06, G:0.12, T:0.35
Consensus pattern (175 bp):
TTAATTTTCTTTAAAATAAATTTTCAAAAAAAAAGTTTTGAGGAAAAGTTGAAAGTATCAATTTT
CCTTAAGAATAAATTTTCAAAAAAAAAGGTTTTGAAAAAAAGTTGAAAGTATCAATTTTCCTCAA
AAATAAAAGTTTAAAAAAAAAAATTTTGAGAAAAAGTTGAAAGTA
Found at i:14627477 original size:14 final size:14
Alignment explanation
Indices: 14627455--14627494 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
14627445 ATTAATATTT
*
14627455 ATAATTATTTTTAG
1 ATAAATATTTTTAG
14627469 ATAAATATTTTTAG
1 ATAAATATTTTTAG
*
14627483 A-AAAAATTTTTA
1 ATAAATATTTTTA
14627495 ATTTATTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 10 0.42
14 14 0.58
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (14 bp):
ATAAATATTTTTAG
Found at i:14627479 original size:13 final size:13
Alignment explanation
Indices: 14627461--14627494 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
14627451 ATTTATAATT
*
14627461 ATTTTTAGATAAAT
1 ATTTTTAGA-AAAA
14627475 ATTTTTAGAAAAA
1 ATTTTTAGAAAAA
14627488 ATTTTTA
1 ATTTTTA
14627495 ATTTATTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (13 bp):
ATTTTTAGAAAAA
Found at i:14628576 original size:22 final size:23
Alignment explanation
Indices: 14628538--14628581 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
14628528 ATCATCATTT
*
14628538 AAAATTAATTACGTTAA-AAATA
1 AAAATTAATTACATTAATAAATA
14628560 AAAATTATATTA-ATTAATAAAT
1 AAAATTA-ATTACATTAATAAAT
14628582 TCATACTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (23 bp):
AAAATTAATTACATTAATAAATA
Found at i:14628859 original size:21 final size:21
Alignment explanation
Indices: 14628835--14628876 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
14628825 ATAATATTAA
*
14628835 AAAATATAAATA-ATATGAATT
1 AAAAT-TAAATATATATAAATT
14628856 AAAATTAAATATATATAAATT
1 AAAATTAAATATATATAAATT
14628877 TAACAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (21 bp):
AAAATTAAATATATATAAATT
Found at i:14629185 original size:14 final size:14
Alignment explanation
Indices: 14629149--14629188 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
14629139 GTTTATTTCA
* *
14629149 TAAAAATTAATTTT
1 TAAAAAATATTTTT
14629163 TAAAAAATATTTTT
1 TAAAAAATATTTTT
*
14629177 TGAAAAATATTT
1 TAAAAAATATTT
14629189 ACATTTTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (14 bp):
TAAAAAATATTTTT
Found at i:14629380 original size:19 final size:18
Alignment explanation
Indices: 14629303--14629392 Score: 64
Period size: 19 Copynumber: 5.1 Consensus size: 18
14629293 ATATTGAAAT
*
14629303 TATTTATTATTAAAAT--
1 TATTTAATATTAAAATAA
14629319 TA-TTAATATTCAAGAATAA
1 TATTTAATATT-AA-AATAA
* *
14629338 T-TAT-ATTTTAATAATAA
1 TATTTAATATTAA-AATAA
*
14629355 TATTTAATATTAAAATAT
1 TATTTAATATTAAAATAA
*
14629373 TATATTAATATAAAAATAA
1 TAT-TTAATATTAAAATAA
14629392 T
1 T
14629393 TAAAATAAAA
Statistics
Matches: 57, Mismatches: 9, Indels: 13
0.72 0.11 0.16
Matches are distributed among these distances:
15 7 0.12
16 4 0.07
17 11 0.19
18 13 0.23
19 22 0.39
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (18 bp):
TATTTAATATTAAAATAA
Found at i:14629391 original size:37 final size:37
Alignment explanation
Indices: 14629321--14629392 Score: 87
Period size: 37 Copynumber: 1.9 Consensus size: 37
14629311 ATTAAAATTA
*
14629321 TTAATATTCAAGAATAATTATATTTTAATAATAATAT
1 TTAATATTCAAGAATAATTATATTTTAAAAATAATAT
14629358 TTAATATT-AA-AAT-ATTATATTAATATAAAAATAAT
1 TTAATATTCAAGAATAATTATATT--T-TAAAAATAAT
14629393 TAAAATAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
34 8 0.26
35 3 0.10
36 3 0.10
37 17 0.55
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (37 bp):
TTAATATTCAAGAATAATTATATTTTAAAAATAATAT
Found at i:14629394 original size:20 final size:20
Alignment explanation
Indices: 14629319--14629394 Score: 65
Period size: 19 Copynumber: 4.0 Consensus size: 20
14629309 TTATTAAAAT
*
14629319 TATTAATATTCAAGAATAATTA
1 TATTAATA-T-AAAAATAATTA
*
14629341 TATT--T-TAATAATAA-TA
1 TATTAATATAAAAATAATTA
*
14629357 T-TTAATATTAAAAT-ATTA
1 TATTAATATAAAAATAATTA
14629375 TATTAATATAAAAATAATTA
1 TATTAATATAAAAATAATTA
14629395 AAATAAAACT
Statistics
Matches: 44, Mismatches: 4, Indels: 14
0.71 0.06 0.23
Matches are distributed among these distances:
15 2 0.05
16 3 0.07
17 9 0.20
18 9 0.20
19 12 0.27
20 5 0.11
22 4 0.09
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (20 bp):
TATTAATATAAAAATAATTA
Found at i:14629475 original size:43 final size:42
Alignment explanation
Indices: 14629423--14629511 Score: 117
Period size: 43 Copynumber: 2.1 Consensus size: 42
14629413 TTCTTTATAT
* * *
14629423 TATTATTTT-AAAATATTTGAAATAGTATTACTATTCTTAAAA
1 TATTATTTTAAAAATA-TTAAAATAGTAATACTATTATTAAAA
*
14629465 TATTATTTTTAAAAATATTAAAATAGTAATATTATTATTAAAA
1 TATTA-TTTTAAAAATATTAAAATAGTAATACTATTATTAAAA
14629508 TATT
1 TATT
14629512 TACACTATTA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
42 5 0.12
43 30 0.73
44 6 0.15
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.48
Consensus pattern (42 bp):
TATTATTTTAAAAATATTAAAATAGTAATACTATTATTAAAA
Found at i:14629659 original size:27 final size:27
Alignment explanation
Indices: 14629588--14629667 Score: 74
Period size: 27 Copynumber: 3.0 Consensus size: 27
14629578 ATTTATATTT
* *
14629588 ATTATTAAAAAAGTAATATAAATAATAA
1 ATTATTAAAAAAATAATATAAA-ATTAA
* * *
14629616 CTTAATAAATAAA-AATATAAAATTAA
1 ATTATTAAAAAAATAATATAAAATTAA
*
14629642 ATTTTTAAAAAAATAATA-AGAAATTA
1 ATTATTAAAAAAATAATATA-AAATTA
14629668 TTTAAAATAT
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
26 14 0.34
27 18 0.44
28 9 0.22
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.33
Consensus pattern (27 bp):
ATTATTAAAAAAATAATATAAAATTAA
Found at i:14629743 original size:44 final size:44
Alignment explanation
Indices: 14629688--14629803 Score: 134
Period size: 41 Copynumber: 2.7 Consensus size: 44
14629678 TCATATTAAG
14629688 AAAATAATATTATTATATTATTTAATATTAATTATTAAAATAAT
1 AAAATAATATTATTATATTATTTAATATTAATTATTAAAATAAT
* *
14629732 --AA-AATATTATTATA-TATGTTATTATTTATTATTAAAATAAT
1 AAAATAATATTATTATATTAT-TTAATATTAATTATTAAAATAAT
* * *
14629773 AATATAATACTATT-TATTATTGAAATATTAA
1 AAAATAATATTATTATATTATT-TAATATTAA
14629804 AAATATTTAT
Statistics
Matches: 59, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
40 3 0.05
41 33 0.56
42 2 0.03
43 4 0.07
44 17 0.29
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.48
Consensus pattern (44 bp):
AAAATAATATTATTATATTATTTAATATTAATTATTAAAATAAT
Found at i:14630522 original size:19 final size:19
Alignment explanation
Indices: 14630498--14630535 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
14630488 CACATATCAG
*
14630498 TGCTATGCAAGTAGATTTC
1 TGCTATGCAAGTAAATTTC
14630517 TGCTATGCAAGTAAATTTC
1 TGCTATGCAAGTAAATTTC
14630536 AAAAGTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (19 bp):
TGCTATGCAAGTAAATTTC
Found at i:14632188 original size:15 final size:15
Alignment explanation
Indices: 14632170--14632202 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
14632160 TTTTTTTTTG
14632170 TTTCCTTT-TCATTCT
1 TTTCCTTTCTC-TTCT
14632185 TTTCCTTTCTCTTCT
1 TTTCCTTTCTCTTCT
14632200 TTT
1 TTT
14632203 ACTTCAATCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 15 0.88
16 2 0.12
ACGTcount: A:0.03, C:0.27, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTCCTTTCTCTTCT
Found at i:14633937 original size:24 final size:24
Alignment explanation
Indices: 14633864--14633937 Score: 62
Period size: 26 Copynumber: 3.0 Consensus size: 24
14633854 AATATAAATA
*
14633864 TAAAGTATAT-ATTTTTAT-TTTT
1 TAAATTATATAATTTTTATATTTT
* *
14633886 ATTAATTATATAATTTTTATTAAATTT
1 -TAAATTATATAATTTTTA-T-ATTTT
**
14633913 TAAATTATATTGTTTTTATATTTT
1 TAAATTATATAATTTTTATATTTT
14633937 T
1 T
14633938 TAGTTTCATC
Statistics
Matches: 40, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
23 8 0.20
24 12 0.30
25 2 0.05
26 15 0.38
27 3 0.08
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.64
Consensus pattern (24 bp):
TAAATTATATAATTTTTATATTTT
Found at i:14634932 original size:14 final size:14
Alignment explanation
Indices: 14634915--14634969 Score: 55
Period size: 14 Copynumber: 4.1 Consensus size: 14
14634905 ATTTTAAAAT
14634915 TTTATAATATAATA
1 TTTATAATATAATA
14634929 TTTA-AATTATAA-A
1 TTTATAA-TATAATA
14634942 TTTATAAT-TAATA
1 TTTATAATATAATA
*
14634955 -TGATAATATTAATA
1 TTTATAATA-TAATA
14634969 T
1 T
14634970 AGTTAATTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 11
0.74 0.02 0.24
Matches are distributed among these distances:
12 9 0.26
13 9 0.26
14 16 0.47
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (14 bp):
TTTATAATATAATA
Found at i:14637256 original size:18 final size:18
Alignment explanation
Indices: 14637233--14637290 Score: 91
Period size: 18 Copynumber: 3.2 Consensus size: 18
14637223 ATCATCCAAC
14637233 TCATCATCAAGATCATAA
1 TCATCATCAAGATCATAA
14637251 TCATCATCAAGATCATAA
1 TCATCATCAAGATCATAA
*
14637269 TCATCATCCAAG-TCATCA
1 TCATCAT-CAAGATCATAA
14637287 TCAT
1 TCAT
14637291 AAACATCGTC
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
18 34 0.89
19 4 0.11
ACGTcount: A:0.40, C:0.26, G:0.05, T:0.29
Consensus pattern (18 bp):
TCATCATCAAGATCATAA
Found at i:14637471 original size:6 final size:6
Alignment explanation
Indices: 14637426--14637453 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
14637416 TGTTGAAGCT
14637426 GCTGAA GCTGAA GCTGAA GCTGAA GCTG
1 GCTGAA GCTGAA GCTGAA GCTGAA GCTG
14637454 TTGAAGTTGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.29, C:0.18, G:0.36, T:0.18
Consensus pattern (6 bp):
GCTGAA
Found at i:14637521 original size:3 final size:3
Alignment explanation
Indices: 14637515--14637541 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
14637505 ATTATGGTTA
14637515 TTG TTG TTG TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG
14637542 CCTTTTTGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.33, T:0.67
Consensus pattern (3 bp):
TTG
Found at i:14642486 original size:37 final size:32
Alignment explanation
Indices: 14642444--14642522 Score: 86
Period size: 37 Copynumber: 2.3 Consensus size: 32
14642434 TATTTAACGA
*
14642444 TAAAAATTATATTGAAATTTCTATTAAAACAACTATC
1 TAAAAATTATATT-AAATTT-TACT-AAA-AACT-TC
* *
14642481 TAAAAAATATATTAAATTTTACTAAAAACTTT
1 TAAAAATTATATTAAATTTTACTAAAAACTTC
14642513 TAAAAATTAT
1 TAAAAATTAT
14642523 GCATTTGATT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
32 10 0.26
33 4 0.11
34 3 0.08
35 3 0.08
36 6 0.16
37 12 0.32
ACGTcount: A:0.52, C:0.08, G:0.01, T:0.39
Consensus pattern (32 bp):
TAAAAATTATATTAAATTTTACTAAAAACTTC
Found at i:14655910 original size:21 final size:22
Alignment explanation
Indices: 14655886--14655944 Score: 70
Period size: 21 Copynumber: 2.7 Consensus size: 22
14655876 AAATTGTTTT
14655886 TATAATTTTATATAAATTTAA-
1 TATAATTTTATATAAATTTAAC
*
14655907 TATAACTTTTA-ATATATTTAAC
1 TATAA-TTTTATATAAATTTAAC
14655929 TA-AATTTATATATAAA
1 TATAATTT-TATATAAA
14655945 AAATTATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.49
Consensus pattern (22 bp):
TATAATTTTATATAAATTTAAC
Found at i:14658185 original size:36 final size:36
Alignment explanation
Indices: 14658138--14658208 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
14658128 AGCGCCATGT
**
14658138 GGAACCCACTTAATGGCAGAATGATAATCAGATAAC
1 GGAACCCACTTAATAACAGAATGATAATCAGATAAC
*
14658174 GGAACCCACTTAATAACAGAATGGTAATCAGATAA
1 GGAACCCACTTAATAACAGAATGATAATCAGATAA
14658209 GTAAATTATA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.44, C:0.18, G:0.18, T:0.20
Consensus pattern (36 bp):
GGAACCCACTTAATAACAGAATGATAATCAGATAAC
Found at i:14661834 original size:16 final size:17
Alignment explanation
Indices: 14661808--14661839 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
14661798 TGATAATCTT
14661808 TCCTATTTTCTTTCCTC
1 TCCTATTTTCTTTCCTC
14661825 TCCT-TTTTCTTTCCT
1 TCCTATTTTCTTTCCT
14661840 ACCAAGCACG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.03, C:0.34, G:0.00, T:0.62
Consensus pattern (17 bp):
TCCTATTTTCTTTCCTC
Found at i:14664192 original size:9 final size:9
Alignment explanation
Indices: 14664178--14664203 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
14664168 ACATAAGCAG
14664178 GCGGTGGCT
1 GCGGTGGCT
14664187 GCGGTGGCT
1 GCGGTGGCT
14664196 GCGGTGGC
1 GCGGTGGC
14664204 GGCGCCACAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.23, G:0.58, T:0.19
Consensus pattern (9 bp):
GCGGTGGCT
Found at i:14664767 original size:6 final size:6
Alignment explanation
Indices: 14664756--14664854 Score: 52
Period size: 6 Copynumber: 17.5 Consensus size: 6
14664746 GGGTATAATA
* * *
14664756 TTAAAT TTAAAT TTAAAT TT-GAT TTAAAAT TT-AAT TCAAA- -TAATT
1 TTAAAT TTAAAT TTAAAT TTAAAT TT-AAAT TTAAAT TTAAAT TTAAAT
** * * *
14664801 TTATTTT TTAAAT TTAAAT TT-AAT TTAAAA TAAAAA TTAAA- TT--AT
1 TTA-AAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
14664846 TTAAAT TTA
1 TTAAAT TTA
14664855 TTGAGTAAGT
Statistics
Matches: 72, Mismatches: 11, Indels: 20
0.70 0.11 0.19
Matches are distributed among these distances:
3 1 0.01
4 4 0.06
5 15 0.21
6 43 0.60
7 9 0.12
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (6 bp):
TTAAAT
Found at i:14665095 original size:11 final size:11
Alignment explanation
Indices: 14665081--14665119 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
14665071 TCAATAGTAA
14665081 TTAAATTAAAT
1 TTAAATTAAAT
**
14665092 TTAAATTTTAT
1 TTAAATTAAAT
*
14665103 TCAAATTAAAT
1 TTAAATTAAAT
14665114 TTAAAT
1 TTAAAT
14665120 ATTTTATAAA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (11 bp):
TTAAATTAAAT
Found at i:14665494 original size:10 final size:10
Alignment explanation
Indices: 14665479--14665534 Score: 51
Period size: 10 Copynumber: 5.4 Consensus size: 10
14665469 TTCAATTTTT
14665479 AAAAATATAA
1 AAAAATATAA
14665489 AAAAATATAA
1 AAAAATATAA
14665499 AAAAA-ATTCAA
1 AAAAATA-T-AA
* *
14665510 AACAATTTAA
1 AAAAATATAA
*
14665520 AAACAATCTAA
1 AAA-AATATAA
14665531 AAAA
1 AAAA
14665535 TTTTAATAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 1 0.03
10 21 0.55
11 16 0.42
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (10 bp):
AAAAATATAA
Found at i:14665501 original size:11 final size:11
Alignment explanation
Indices: 14665479--14665534 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
14665469 TTCAATTTTT
14665479 AAAAATAT-AA
1 AAAAATATAAA
14665489 AAAAATATAAA
1 AAAAATATAAA
*
14665500 AAAAAT-TCAA
1 AAAAATATAAA
* *
14665510 AACAATTTAAA
1 AAAAATATAAA
* *
14665521 AACAATCTAAA
1 AAAAATATAAA
14665532 AAA
1 AAA
14665535 TTTTAATAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
10 16 0.41
11 23 0.59
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (11 bp):
AAAAATATAAA
Found at i:14665505 original size:21 final size:20
Alignment explanation
Indices: 14665479--14665534 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 20
14665469 TTCAATTTTT
14665479 AAAAATATAAAAAAATATAAA
1 AAAAAT-TAAAAAAATATAAA
* *
14665500 AAAAATTCAAAACAATTTAAA
1 AAAAATT-AAAAAAATATAAA
*
14665521 AACAATCTAAAAAA
1 AAAAAT-TAAAAAA
14665535 TTTTAATAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 1 0.03
21 27 0.93
22 1 0.03
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (20 bp):
AAAAATTAAAAAAATATAAA
Found at i:14665545 original size:10 final size:9
Alignment explanation
Indices: 14665530--14665582 Score: 52
Period size: 9 Copynumber: 5.6 Consensus size: 9
14665520 AAACAATCTA
*
14665530 AAAAATTTT
1 AAAAATTCT
14665539 AATAAATTCT
1 AA-AAATTCT
*
14665549 AAAAATTCC
1 AAAAATTCT
*
14665558 AAAAAGTTTT
1 AAAAA-TTCT
14665568 AAAAAATTCT
1 -AAAAATTCT
14665578 AAAAA
1 AAAAA
14665583 AATGTTAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
9 18 0.50
10 13 0.36
11 5 0.14
ACGTcount: A:0.58, C:0.08, G:0.02, T:0.32
Consensus pattern (9 bp):
AAAAATTCT
Found at i:14665583 original size:10 final size:10
Alignment explanation
Indices: 14665499--14665583 Score: 77
Period size: 10 Copynumber: 8.6 Consensus size: 10
14665489 AAAAATATAA
14665499 AAAAAATTC-
1 AAAAAATTCT
14665508 AAAACAATT-T
1 AAAA-AATTCT
*
14665518 AAAAACAATCT
1 AAAAA-ATTCT
*
14665529 AAAAAATTTT
1 AAAAAATTCT
*
14665539 AATAAATTCT
1 AAAAAATTCT
*
14665549 -AAAAATTCC
1 AAAAAATTCT
* *
14665558 AAAAAGTTTT
1 AAAAAATTCT
14665568 AAAAAATTCT
1 AAAAAATTCT
14665578 AAAAAA
1 AAAAAA
14665584 ATGTTAAAAT
Statistics
Matches: 59, Mismatches: 12, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
9 12 0.20
10 41 0.69
11 6 0.10
ACGTcount: A:0.61, C:0.09, G:0.01, T:0.28
Consensus pattern (10 bp):
AAAAAATTCT
Found at i:14665635 original size:27 final size:26
Alignment explanation
Indices: 14665605--14665656 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
14665595 TATAGACAAT
*
14665605 TAAAAATATGAAATATTTTTAAAAATA
1 TAAAAAT-TGAAATAATTTTAAAAATA
**
14665632 TAAAAATTGTGATAATTTTAAAAAT
1 TAAAAATTGAAATAATTTTAAAAAT
14665657 TCAAAAAACT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 15 0.68
27 7 0.32
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (26 bp):
TAAAAATTGAAATAATTTTAAAAATA
Found at i:14665663 original size:27 final size:26
Alignment explanation
Indices: 14665621--14665679 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 26
14665611 TATGAAATAT
* * *
14665621 TTTTAAAAATATAAAAATTGTGATAA
1 TTTTAAAAATATAAAAACTGTAAAAA
14665647 TTTTAAAAAT-TCAAAAAACTGTAAAAA
1 TTTTAAAAATAT--AAAAACTGTAAAAA
14665674 TTTTAA
1 TTTTAA
14665680 TAAAAAATCT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 1 0.04
26 10 0.36
27 17 0.61
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.37
Consensus pattern (26 bp):
TTTTAAAAATATAAAAACTGTAAAAA
Found at i:14665728 original size:17 final size:18
Alignment explanation
Indices: 14665671--14665731 Score: 54
Period size: 17 Copynumber: 3.4 Consensus size: 18
14665661 AAAACTGTAA
14665671 AAATTTTAATAAAAAATCT
1 AAATTTTAAT-AAAAATCT
** **
14665690 AAAAAATTAA-AAAAATGA
1 -AAATTTTAATAAAAATCT
14665708 AAATTTTAATAAAAAT-T
1 AAATTTTAATAAAAATCT
14665725 AAATTTT
1 AAATTTT
14665732 CTTAAAATTA
Statistics
Matches: 33, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
17 14 0.42
18 12 0.36
20 7 0.21
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (18 bp):
AAATTTTAATAAAAATCT
Found at i:14665821 original size:18 final size:18
Alignment explanation
Indices: 14665800--14665851 Score: 59
Period size: 20 Copynumber: 2.8 Consensus size: 18
14665790 AAATATTTTG
14665800 AAATTTTAAAAAATATAA
1 AAATTTTAAAAAATATAA
* *
14665818 AAATTTTTGACAAAATATGA
1 AAA-TTTT-AAAAAATATAA
*
14665838 AATTTTTAAAAAAT
1 AAATTTTAAAAAAT
14665852 TCTAAAATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 9 0.32
19 8 0.29
20 11 0.39
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.37
Consensus pattern (18 bp):
AAATTTTAAAAAATATAA
Found at i:14665821 original size:38 final size:36
Alignment explanation
Indices: 14665779--14665896 Score: 105
Period size: 38 Copynumber: 3.2 Consensus size: 36
14665769 ATTTTTAAAC
14665779 AAAATATTTTGAAATATTTTGAAATTTTAAAAAATATA
1 AAAAT-TTTTGAAA-ATTTTGAAATTTTAAAAAATATA
* * *
14665817 AAAATTTTTGACAAAATATGAAATTTTTAAAAAATTCTA
1 AAAATTTTTGA-AAATTTTGAAA-TTTTAAAAAA-TATA
* * * *
14665856 AAATTTTTTTAAAAATTTTGAAA--ATAAAAAATAAA
1 AAA-ATTTTTGAAAATTTTGAAATTTTAAAAAATATA
14665891 AAAATT
1 AAAATT
14665897 AATAAAAATA
Statistics
Matches: 65, Mismatches: 11, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
34 2 0.03
35 5 0.08
36 7 0.11
37 13 0.20
38 17 0.26
39 15 0.23
40 6 0.09
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.39
Consensus pattern (36 bp):
AAAATTTTTGAAAATTTTGAAATTTTAAAAAATATA
Found at i:14666449 original size:19 final size:20
Alignment explanation
Indices: 14666425--14666468 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
14666415 ATTTTTATTT
* *
14666425 TATAAAAATTTA-AAATATA
1 TATAAAAATTAAGAAAAATA
14666444 TATAAAAATTAAGAAAAATA
1 TATAAAAATTAAGAAAAATA
14666464 TATAA
1 TATAA
14666469 TTTGATTCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (20 bp):
TATAAAAATTAAGAAAAATA
Done.