Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15507587
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 9 of 91
Found at i:1510397 original size:24 final size:25
Alignment explanation
Indices: 1510347--1510397 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 25
1510337 ATGCATATTA
* *
1510347 TAATAGTTATTTAAATTAATGATTT
1 TAATAGTTATTTAAAATAATGAATT
1510372 TAAT-GTTATTTAAAGATAAT-AATT
1 TAATAGTTATTTAAA-ATAATGAATT
1510396 TA
1 TA
1510398 CAAAATATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 15 0.65
25 8 0.35
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (25 bp):
TAATAGTTATTTAAAATAATGAATT
Found at i:1510449 original size:8 final size:8
Alignment explanation
Indices: 1510436--1510462 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
1510426 ATAATAAAAT
1510436 ATAATTAA
1 ATAATTAA
1510444 ATAATTAA
1 ATAATTAA
1510452 ATAATTAA
1 ATAATTAA
1510460 ATA
1 ATA
1510463 TATTTATTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
ATAATTAA
Found at i:1510660 original size:16 final size:15
Alignment explanation
Indices: 1510632--1510663 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
1510622 ATATCAGTTT
1510632 TATAAAAAATTATAA
1 TATAAAAAATTATAA
1510647 TATAAAATAATTATAA
1 TATAAAA-AATTATAA
1510663 T
1 T
1510664 TTTAAAAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
TATAAAAAATTATAA
Found at i:1510924 original size:2 final size:2
Alignment explanation
Indices: 1510917--1510958 Score: 57
Period size: 2 Copynumber: 20.5 Consensus size: 2
1510907 CTTAGACAAC
* *
1510917 AT AT AT AT AT AT AT AT AT AT AT AT AT AGT AA AC AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT A
1510959 AAATAGAAGT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
2 34 0.94
3 2 0.06
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (2 bp):
AT
Found at i:1511106 original size:2 final size:2
Alignment explanation
Indices: 1511099--1511129 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1511089 TAACTAGATC
1511099 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1511130 GGTAAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1512196 original size:13 final size:13
Alignment explanation
Indices: 1512178--1512202 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1512168 ACCTTGGCAG
1512178 GGCAAACTACAAT
1 GGCAAACTACAAT
1512191 GGCAAACTACAA
1 GGCAAACTACAA
1512203 AATTCAATGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.24, G:0.16, T:0.12
Consensus pattern (13 bp):
GGCAAACTACAAT
Found at i:1512357 original size:4 final size:4
Alignment explanation
Indices: 1512350--1512406 Score: 55
Period size: 4 Copynumber: 14.8 Consensus size: 4
1512340 ATATACAGAC
* * * * *
1512350 GTAT GTAT GTGT ATAT ATAT GTAT GTAT ATAT GTA- -TAT GTAT GTGT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1512396 GTAT GTAT GTA
1 GTAT GTAT GTA
1512407 ACTGCTATTA
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
2 2 0.05
4 41 0.95
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.49
Consensus pattern (4 bp):
GTAT
Found at i:1512384 original size:22 final size:22
Alignment explanation
Indices: 1512359--1512406 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
1512349 CGTATGTATG
1512359 TGTATATATATGTATGTATATA
1 TGTATATATATGTATGTATATA
* * *
1512381 TGTATATGTATGTGTGTATGTA
1 TGTATATATATGTATGTATATA
1512403 TGTA
1 TGTA
1512407 ACTGCTATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (22 bp):
TGTATATATATGTATGTATATA
Found at i:1512399 original size:14 final size:14
Alignment explanation
Indices: 1512351--1512391 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
1512341 TATACAGACG
*
1512351 TATGTATGTGTATA
1 TATGTATATGTATA
* *
1512365 TATATGTATGTATA
1 TATGTATATGTATA
1512379 TATGTATATGTAT
1 TATGTATATGTAT
1512392 GTGTGTATGT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (14 bp):
TATGTATATGTATA
Found at i:1513139 original size:20 final size:20
Alignment explanation
Indices: 1513114--1513158 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 20
1513104 TTGAAAGAAA
1513114 TTATATATTTTTATT-AATTT
1 TTATATATTTTT-TTAAATTT
1513134 TTATATATTTTTTTAAATTT
1 TTATATATTTTTTTAAATTT
1513154 TTATA
1 TTATA
1513159 AAATAAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 2 0.08
20 22 0.92
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (20 bp):
TTATATATTTTTTTAAATTT
Found at i:1513162 original size:11 final size:10
Alignment explanation
Indices: 1513114--1513160 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
1513104 TTGAAAGAAA
*
1513114 TTATATATTT
1 TTATAAATTT
*
1513124 TTATTAATTT
1 TTATAAATTT
*
1513134 TTATATATTT
1 TTATAAATTT
*
1513144 TTTTAAATTT
1 TTATAAATTT
1513154 TTATAAA
1 TTATAAA
1513161 ATAAAATTAT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
10 30 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (10 bp):
TTATAAATTT
Found at i:1513211 original size:21 final size:23
Alignment explanation
Indices: 1513176--1513227 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 23
1513166 ATTATTATTT
* *
1513176 TATAATAAATTTATTTAAA-AATA
1 TATAA-AATTTTATTAAAATAATA
1513199 T-TAAAATTTTATTAAAATAATA
1 TATAAAATTTTATTAAAATAATA
1513221 TATAAAA
1 TATAAAA
1513228 ATAAAAAACA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 11 0.44
22 8 0.32
23 6 0.24
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (23 bp):
TATAAAATTTTATTAAAATAATA
Found at i:1518169 original size:30 final size:30
Alignment explanation
Indices: 1518135--1518192 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
1518125 TACCTACCTA
* *
1518135 ATCTTTATTAATTTAATCTCAAGACTCTTT
1 ATCTTTACTAATCTAATCTCAAGACTCTTT
*
1518165 ATCTTTCCTAATCTAATCTCAAGACTCT
1 ATCTTTACTAATCTAATCTCAAGACTCT
1518193 AGAAATTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.22, G:0.03, T:0.45
Consensus pattern (30 bp):
ATCTTTACTAATCTAATCTCAAGACTCTTT
Found at i:1519838 original size:21 final size:20
Alignment explanation
Indices: 1519810--1519849 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
1519800 ACATGAAAAC
*
1519810 TTATAAGAAAATTCTTATAT
1 TTATAAGAAAAGTCTTATAT
*
1519830 TTATCAAGATAAGTCTTATA
1 TTAT-AAGAAAAGTCTTATA
1519850 ATCATAACTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.42
Consensus pattern (20 bp):
TTATAAGAAAAGTCTTATAT
Found at i:1523789 original size:61 final size:60
Alignment explanation
Indices: 1523639--1523821 Score: 267
Period size: 60 Copynumber: 3.0 Consensus size: 60
1523629 CCATGATCAA
* *
1523639 TACTTGAGGATGTACGCTTTGGAGGTCTCACAGATTTCCCTTGCTTTGGATGTCCAACAT
1 TACTTGAGGATGTACGCTCTGGAGGTCTCACAGATTTCCCTTGCTTTGGATGTGCAACAT
* * * *
1523699 TACTTGAGGATGTACGCTCTGGAGTTCTCATAGATTTCCCTTGTTTTGGATGTGCAATATT
1 TACTTGAGGATGTACGCTCTGGAGGTCTCACAGATTTCCCTTGCTTTGGATGTGCAACA-T
* * * *
1523760 TTCTTGAGGACGTACGCTCTGGAGGTCTCACAGATTTCTCTTGCTTTGCATGTGCAACAT
1 TACTTGAGGATGTACGCTCTGGAGGTCTCACAGATTTCCCTTGCTTTGGATGTGCAACAT
1523820 TA
1 TA
1523822 TTAGAGCGTT
Statistics
Matches: 107, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
60 55 0.51
61 52 0.49
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (60 bp):
TACTTGAGGATGTACGCTCTGGAGGTCTCACAGATTTCCCTTGCTTTGGATGTGCAACAT
Found at i:1529035 original size:2 final size:2
Alignment explanation
Indices: 1529030--1529060 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1529020 TGTGTGTGTG
1529030 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1529061 TTGTATGTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1529437 original size:10 final size:10
Alignment explanation
Indices: 1529422--1529447 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
1529412 CATTAACCTA
1529422 AAAAAAAAAT
1 AAAAAAAAAT
1529432 AAAAAAAAAT
1 AAAAAAAAAT
1529442 AAAAAA
1 AAAAAA
1529448 TCTTGGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (10 bp):
AAAAAAAAAT
Found at i:1529578 original size:12 final size:12
Alignment explanation
Indices: 1529561--1529617 Score: 51
Period size: 12 Copynumber: 4.5 Consensus size: 12
1529551 AACATGATTT
1529561 AAAATTTTAATA
1 AAAATTTTAATA
*
1529573 AAAATTGTAATA
1 AAAATTTTAATA
** *
1529585 AAAATGATAAAATTT
1 AAAAT--TTTAA-TA
1529600 AAAATTTTAATA
1 AAAATTTTAATA
1529612 AAAATT
1 AAAATT
1529618 ATATATAATT
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
12 23 0.66
13 3 0.09
14 3 0.09
15 6 0.17
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (12 bp):
AAAATTTTAATA
Found at i:1529898 original size:24 final size:24
Alignment explanation
Indices: 1529821--1529901 Score: 62
Period size: 24 Copynumber: 3.5 Consensus size: 24
1529811 TAATTTATAT
* *
1529821 ATATATTAAATTTTTA-TAAAATA
1 ATATATAAAAATTTTATTAAAATA
** *
1529844 A-A-ATAATTATTTTATAATAAAT-
1 ATATATAAAAATTTTATTA-AAATA
* *
1529866 TTATTTAAAAATTTTATTAAAATA
1 ATATATAAAAATTTTATTAAAATA
1529890 ATATATAAAAAT
1 ATATATAAAAAT
1529902 CAAAAAATAA
Statistics
Matches: 41, Mismatches: 12, Indels: 9
0.66 0.19 0.15
Matches are distributed among these distances:
21 8 0.20
22 2 0.05
23 10 0.24
24 21 0.51
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (24 bp):
ATATATAAAAATTTTATTAAAATA
Found at i:1529910 original size:21 final size:21
Alignment explanation
Indices: 1529884--1529925 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
1529874 AAATTTTATT
*
1529884 AAAATAATATATAAAAATCAA
1 AAAATAAAATATAAAAATCAA
*
1529905 AAAATAAAATTTAAAAATCAA
1 AAAATAAAATATAAAAATCAA
1529926 TTAATCAAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (21 bp):
AAAATAAAATATAAAAATCAA
Found at i:1532725 original size:60 final size:60
Alignment explanation
Indices: 1532588--1532763 Score: 211
Period size: 60 Copynumber: 3.0 Consensus size: 60
1532578 CAATGATCAG
* * *
1532588 TACTTGAGGATGTACGCTCTGGAGGTCTCACAGA------TTGCTTTGGATGTCCAACAT
1 TACTTGAGGACGTACGCTCTGGAGGTCTCACAGATTTCCCTTGCTTTGGATGTGCAATAT
* * * *
1532642 TACTTGAGGATGTATGCTCTGGAGTTCTCACAGATTTCCCTTGTTTTGGATGTGCAATAT
1 TACTTGAGGACGTACGCTCTGGAGGTCTCACAGATTTCCCTTGCTTTGGATGTGCAATAT
* * **
1532702 TACTTGTGGACGTACGCTTTGGAGGTCTCACAGATTTCCCTTGCTTTCTATGTGCAATAT
1 TACTTGAGGACGTACGCTCTGGAGGTCTCACAGATTTCCCTTGCTTTGGATGTGCAATAT
1532762 TA
1 TA
1532764 TTAGAGCGTT
Statistics
Matches: 103, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
54 32 0.31
60 71 0.69
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.37
Consensus pattern (60 bp):
TACTTGAGGACGTACGCTCTGGAGGTCTCACAGATTTCCCTTGCTTTGGATGTGCAATAT
Found at i:1536647 original size:15 final size:16
Alignment explanation
Indices: 1536627--1536663 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
1536617 ATATCAATTT
1536627 TATAAAA-AATTATAA
1 TATAAAATAATTATAA
1536642 TATAAAATAATTATAA
1 TATAAAATAATTATAA
1536658 T-TAAAA
1 TATAAAA
1536664 CGAAAGCATG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
TATAAAATAATTATAA
Found at i:1539481 original size:4 final size:4
Alignment explanation
Indices: 1539461--1539525 Score: 62
Period size: 4 Copynumber: 16.8 Consensus size: 4
1539451 CATGTATATA
* * *
1539461 TATG CATG TATG CATG TATG TATG TATG TA-- TATA TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * *
1539507 CATG TATG TGTG TGTG TAT
1 TATG TATG TATG TATG TAT
1539526 ATATATATAT
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
2 2 0.04
4 48 0.96
ACGTcount: A:0.25, C:0.05, G:0.25, T:0.46
Consensus pattern (4 bp):
TATG
Found at i:1539491 original size:34 final size:34
Alignment explanation
Indices: 1539452--1539531 Score: 133
Period size: 34 Copynumber: 2.4 Consensus size: 34
1539442 TTGCAAATTC
1539452 ATGTATATATATGCATGTATGCATGTATGTATGT
1 ATGTATATATATGCATGTATGCATGTATGTATGT
* *
1539486 ATGTATATATATGTATGTATGCATGTATGTGTGT
1 ATGTATATATATGCATGTATGCATGTATGTATGT
*
1539520 GTGTATATATAT
1 ATGTATATATAT
1539532 ATATATTTTC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.29, C:0.04, G:0.21, T:0.46
Consensus pattern (34 bp):
ATGTATATATATGCATGTATGCATGTATGTATGT
Found at i:1539690 original size:193 final size:195
Alignment explanation
Indices: 1539346--1539855 Score: 627
Period size: 193 Copynumber: 2.6 Consensus size: 195
1539336 AACTACAGAA
* * *
1539346 TTCAATGGAGCTGTATTTTTTGTTCCAGTAGTGGAGCTTTGAGCCTAACTGTGGCTAACTCTTTG
1 TTCAATGGAGCTGTATTCTTTGTTCCAGTAGTGGAGCTTTGAGCCTAACTGTGGTTGACTCTTTG
* * *
1539411 CTGCTTCACTTTATCTTATCTTG-TTGTTTTTTTGCAAATTCATGTATATATATGCATGTATGCA
66 CTGCTCCACTTTATCTTATCTTGCTT-TTTTTTTGCAAATTCATGTATATATAT-CATATATACA
* *
1539475 TGTATGTATGTATGTATATATATGTATG-TATGCATGTATG-TG-TGTGTGTATATATATATATA
129 TATATGCATGTATGTATATATATGTATGATATGCATGTATGATGTTGTGTGTATATATATATATA
1539537 TT
194 TT
*
1539539 TTCAATGCAGCTGTATTCTTTGTTCCAGTAGTGGAGCTTTGAGCCTAACTGTGGTTGACTCTTTG
1 TTCAATGGAGCTGTATTCTTTGTTCCAGTAGTGGAGCTTTGAGCCTAACTGTGGTTGACTCTTTG
* * *
1539604 CTGCTCCACTTTATCTTATCTTGCTTTTTTTTTGCAAATTCATGTATGTGTAT-ATATATATATA
66 CTGCTCCACTTTATCTTATCTTGCTTTTTTTTTGCAAATTCATGTATATATATCATATATACATA
* * *
1539668 TATGCATGTTTGCATGTATATATGTATGTATATATATGTATGTATGCATGTATTTATGTGTGTGT
131 TATGCATG--T--ATGTATATA--TATGTAT-GATATGCATGTATG-ATG----T-TGTGTGTAT
* *
1539733 GTATATATATTTT
183 ATATATATATATT
* * * *
1539746 TTCAACGGAGCTGTATTCTTTGTTCCAGTAGTGGAGCTTTGAACCTAACTGCGGTTGACTTTTTG
1 TTCAATGGAGCTGTATTCTTTGTTCCAGTAGTGGAGCTTTGAGCCTAACTGTGGTTGACTCTTTG
* * *
1539811 CTGCTCCACTTCA-CTTATCTTGCTGTTTTTTTGCAAGTTCATGTA
66 CTGCTCCACTTTATCTTATCTTGCTTTTTTTTTGCAAATTCATGTA
1539856 GCATATACAC
Statistics
Matches: 275, Mismatches: 25, Indels: 21
0.86 0.08 0.07
Matches are distributed among these distances:
191 14 0.05
193 109 0.40
194 2 0.01
195 9 0.03
197 7 0.03
199 11 0.04
201 2 0.01
206 30 0.11
207 91 0.33
ACGTcount: A:0.21, C:0.14, G:0.19, T:0.46
Consensus pattern (195 bp):
TTCAATGGAGCTGTATTCTTTGTTCCAGTAGTGGAGCTTTGAGCCTAACTGTGGTTGACTCTTTG
CTGCTCCACTTTATCTTATCTTGCTTTTTTTTTGCAAATTCATGTATATATATCATATATACATA
TATGCATGTATGTATATATATGTATGATATGCATGTATGATGTTGTGTGTATATATATATATATT
Found at i:1539698 original size:12 final size:12
Alignment explanation
Indices: 1539681--1539726 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 12
1539671 GCATGTTTGC
1539681 ATGTATATATGT
1 ATGTATATATGT
1539693 ATGTATATA--T
1 ATGTATATATGT
* *
1539703 ATGTATGTATGC
1 ATGTATATATGT
*
1539715 ATGTATTTATGT
1 ATGTATATATGT
1539727 GTGTGTGTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
10 9 0.32
12 19 0.68
ACGTcount: A:0.30, C:0.02, G:0.17, T:0.50
Consensus pattern (12 bp):
ATGTATATATGT
Found at i:1539703 original size:14 final size:14
Alignment explanation
Indices: 1539684--1539712 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
1539674 TGTTTGCATG
1539684 TATATATGTATGTA
1 TATATATGTATGTA
1539698 TATATATGTATGTA
1 TATATATGTATGTA
1539712 T
1 T
1539713 GCATGTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (14 bp):
TATATATGTATGTA
Found at i:1539738 original size:34 final size:34
Alignment explanation
Indices: 1539662--1539726 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
1539652 TGTATATATA
*
1539662 TATATATATGCATGTTTGCATGTATATATGTATG
1 TATATATATGCATGTATGCATGTATATATGTATG
* *
1539696 TATATATATGTATGTATGCATGTATTTATGT
1 TATATATATGCATGTATGCATGTATATATGT
1539727 GTGTGTGTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.29, C:0.05, G:0.17, T:0.49
Consensus pattern (34 bp):
TATATATATGCATGTATGCATGTATATATGTATG
Found at i:1539804 original size:207 final size:206
Alignment explanation
Indices: 1539455--1539855 Score: 658
Period size: 207 Copynumber: 1.9 Consensus size: 206
1539445 CAAATTCATG
* *
1539455 TATATATATGCATGTATGCATGTATGTATGTATGTATATATATGTATGTATGCATGTATGTGTGT
1 TATATATATGCATGTATGCATGTATATATGTATGTATATATATGTATGTATGCATGTATGTATGT
* *
1539520 GTGTATATATATATATATTTTCAATGCAGCTGTATTCTTTGTTCCAGTAGTGGAGCTTTGAGCCT
66 GTGTATATATATATATATTTTCAACGCAGCTGTATTCTTTGTTCCAGTAGTGGAGCTTTGAACCT
* * *
1539585 AACTGTGGTTGACTCTTTGCTGCTCCACTTTATCTTATCTTGCTTTTTTTTTGCAAATTCATGTA
131 AACTGCGGTTGACTCTTTGCTGCTCCACTTCA-CTTATCTTGCTGTTTTTTTGCAAATTCATGTA
1539650 TGTGTATATATA
195 TGTGTATATATA
* *
1539662 TATATATATGCATGTTTGCATGTATATATGTATGTATATATATGTATGTATGCATGTATTTATGT
1 TATATATATGCATGTATGCATGTATATATGTATGTATATATATGTATGTATGCATGTATGTATGT
* * * *
1539727 GTGTGTGTATATATATTTTTTCAACGGAGCTGTATTCTTTGTTCCAGTAGTGGAGCTTTGAACCT
66 GTGTATATATATATATATTTTCAACGCAGCTGTATTCTTTGTTCCAGTAGTGGAGCTTTGAACCT
* *
1539792 AACTGCGGTTGACTTTTTGCTGCTCCACTTCACTTATCTTGCTGTTTTTTTGCAAGTTCATGTA
131 AACTGCGGTTGACTCTTTGCTGCTCCACTTCACTTATCTTGCTGTTTTTTTGCAAATTCATGTA
1539856 GCATATACAC
Statistics
Matches: 179, Mismatches: 15, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
206 30 0.17
207 149 0.83
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.46
Consensus pattern (206 bp):
TATATATATGCATGTATGCATGTATATATGTATGTATATATATGTATGTATGCATGTATGTATGT
GTGTATATATATATATATTTTCAACGCAGCTGTATTCTTTGTTCCAGTAGTGGAGCTTTGAACCT
AACTGCGGTTGACTCTTTGCTGCTCCACTTCACTTATCTTGCTGTTTTTTTGCAAATTCATGTAT
GTGTATATATA
Found at i:1539891 original size:10 final size:10
Alignment explanation
Indices: 1539876--1539967 Score: 69
Period size: 10 Copynumber: 9.2 Consensus size: 10
1539866 GTGTGTATGC
*
1539876 ATATATACAT
1 ATATATATAT
*
1539886 ATATATACAT
1 ATATATATAT
*
1539896 ACATGA-ATAT
1 ATAT-ATATAT
*
1539906 ATGTATATAT
1 ATATATATAT
*
1539916 ATATATATGT
1 ATATATATAT
* **
1539926 ATGTATGCAT
1 ATATATATAT
*
1539936 ATATATATGT
1 ATATATATAT
1539946 ATATATATAT
1 ATATATATAT
* *
1539956 GTAAATATAT
1 ATATATATAT
1539966 AT
1 AT
1539968 TGAACTACTA
Statistics
Matches: 62, Mismatches: 18, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
9 1 0.02
10 60 0.97
11 1 0.02
ACGTcount: A:0.45, C:0.04, G:0.08, T:0.43
Consensus pattern (10 bp):
ATATATATAT
Found at i:1539916 original size:4 final size:4
Alignment explanation
Indices: 1539876--1539967 Score: 69
Period size: 4 Copynumber: 23.0 Consensus size: 4
1539866 GTGTGTATGC
* * * *
1539876 ATAT ATAC ATAT ATAT ACAT ACAT GA-AT ATAT GTAT ATAT ATAT ATAT
1 ATAT ATAT ATAT ATAT ATAT ATAT -ATAT ATAT ATAT ATAT ATAT ATAT
* * ** * * *
1539924 GTAT GTAT GCAT ATAT ATAT GTAT ATAT ATAT GTAA ATAT ATAT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
1539968 TGAACTACTA
Statistics
Matches: 71, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
3 1 0.01
4 69 0.97
5 1 0.01
ACGTcount: A:0.45, C:0.04, G:0.08, T:0.43
Consensus pattern (4 bp):
ATAT
Found at i:1539919 original size:12 final size:12
Alignment explanation
Indices: 1539902--1539967 Score: 87
Period size: 12 Copynumber: 5.5 Consensus size: 12
1539892 ACATACATGA
1539902 ATATATGTATAT
1 ATATATGTATAT
* *
1539914 ATATATATATGT
1 ATATATGTATAT
* *
1539926 ATGTATGCATAT
1 ATATATGTATAT
1539938 ATATATGTATAT
1 ATATATGTATAT
*
1539950 ATATATGTAAAT
1 ATATATGTATAT
1539962 ATATAT
1 ATATAT
1539968 TGAACTACTA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 45 1.00
ACGTcount: A:0.42, C:0.02, G:0.09, T:0.47
Consensus pattern (12 bp):
ATATATGTATAT
Found at i:1539921 original size:16 final size:16
Alignment explanation
Indices: 1539902--1539967 Score: 78
Period size: 16 Copynumber: 4.1 Consensus size: 16
1539892 ACATACATGA
1539902 ATATATGTATATATAT
1 ATATATGTATATATAT
* **
1539918 ATATATGTATGTATGC
1 ATATATGTATATATAT
* *
1539934 ATATATATATGTATAT
1 ATATATGTATATATAT
*
1539950 ATATATGTAAATATAT
1 ATATATGTATATATAT
1539966 AT
1 AT
1539968 TGAACTACTA
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 41 1.00
ACGTcount: A:0.42, C:0.02, G:0.09, T:0.47
Consensus pattern (16 bp):
ATATATGTATATATAT
Found at i:1540126 original size:20 final size:19
Alignment explanation
Indices: 1540099--1540149 Score: 86
Period size: 20 Copynumber: 2.7 Consensus size: 19
1540089 TTTTTGCAAG
1540099 ATCATGTATGTATATATAT
1 ATCATGTATGTATATATAT
1540118 ATGCATGTATGTATATATAT
1 AT-CATGTATGTATATATAT
1540138 AT-ATGTATGTAT
1 ATCATGTATGTAT
1540150 GTAACTGCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
18 10 0.32
19 2 0.06
20 19 0.61
ACGTcount: A:0.35, C:0.04, G:0.14, T:0.47
Consensus pattern (19 bp):
ATCATGTATGTATATATAT
Found at i:1540137 original size:22 final size:22
Alignment explanation
Indices: 1540101--1540152 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
1540091 TTTGCAAGAT
1540101 CATGTATG--TATATATATATG
1 CATGTATGTATATATATATATG
1540121 CATGTATGTATATATATATATG
1 CATGTATGTATATATATATATG
*
1540143 TATGTATGTA
1 CATGTATGTA
1540153 ACTGCTATCA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 8 0.28
22 21 0.72
ACGTcount: A:0.35, C:0.04, G:0.15, T:0.46
Consensus pattern (22 bp):
CATGTATGTATATATATATATG
Found at i:1540885 original size:10 final size:10
Alignment explanation
Indices: 1540872--1540912 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
1540862 TTGAATGAAA
1540872 TTATATTTTT
1 TTATATTTTT
*
1540882 TTATTAATTTT
1 TTA-TATTTTT
1540893 TTATATTTTT
1 TTATATTTTT
*
1540903 TTAAATTTTT
1 TTATATTTTT
1540913 ATAAAATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (10 bp):
TTATATTTTT
Found at i:1540906 original size:18 final size:19
Alignment explanation
Indices: 1540879--1540915 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
1540869 AAATTATATT
*
1540879 TTTTTATTAATTTTTTATA
1 TTTTTATTAAATTTTTATA
1540898 TTTTT-TTAAATTTTTATA
1 TTTTTATTAAATTTTTATA
1540916 AAATAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTTTATTAAATTTTTATA
Found at i:1540909 original size:19 final size:20
Alignment explanation
Indices: 1540872--1540912 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
1540862 TTGAATGAAA
1540872 TTATATTTTTTTATTAATTTT
1 TTATATTTTTTTA-TAATTTT
1540893 TTATATTTTTTTA-AATTTT
1 TTATATTTTTTTATAATTTT
1540912 T
1 T
1540913 ATAAAATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 7 0.35
21 13 0.65
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (20 bp):
TTATATTTTTTTATAATTTT
Found at i:1540967 original size:22 final size:24
Alignment explanation
Indices: 1540942--1540987 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 24
1540932 TTATAATATA
*
1540942 TTTATTTAAAT-ATAT-TAAAAAT
1 TTTATTCAAATAATATATAAAAAT
1540964 TTTATTCAAATAATATATAAAAAT
1 TTTATTCAAATAATATATAAAAAT
1540988 AAAATTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 10 0.48
23 4 0.19
24 7 0.33
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (24 bp):
TTTATTCAAATAATATATAAAAAT
Found at i:1543907 original size:13 final size:13
Alignment explanation
Indices: 1543889--1543913 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1543879 AAAGTACAAA
1543889 TTTTTGTAATTAT
1 TTTTTGTAATTAT
1543902 TTTTTGTAATTA
1 TTTTTGTAATTA
1543914 GAATTAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (13 bp):
TTTTTGTAATTAT
Found at i:1554381 original size:15 final size:16
Alignment explanation
Indices: 1554361--1554390 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
1554351 TTAGTTTTAA
1554361 AATATAAAA-AATTAT
1 AATATAAAATAATTAT
1554376 AATATAAAATAATTA
1 AATATAAAATAATTA
1554391 CAATTTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AATATAAAATAATTAT
Found at i:1555187 original size:21 final size:21
Alignment explanation
Indices: 1555148--1555187 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
1555138 TGTAATATTT
* * *
1555148 TTTTAATAATATATTTAAAAA
1 TTTTAAAAATACATATAAAAA
1555169 TTTTAAAAATACATATAAA
1 TTTTAAAAATACATATAAA
1555188 TTTCCTATAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (21 bp):
TTTTAAAAATACATATAAAAA
Found at i:1557226 original size:4 final size:4
Alignment explanation
Indices: 1557219--1557261 Score: 50
Period size: 4 Copynumber: 10.8 Consensus size: 4
1557209 TATATATATA
* * * *
1557219 TATG TATG TATG CATG TATG TATG TGTG TGTG TATA TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
1557262 ATTTTCAATG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.23, C:0.02, G:0.26, T:0.49
Consensus pattern (4 bp):
TATG
Found at i:1557229 original size:22 final size:22
Alignment explanation
Indices: 1557176--1557229 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
1557166 TTGCAAATTC
* *
1557176 ATGTATGTACATATATGCATAT
1 ATGTATGTATATATATACATAT
* *
1557198 ATGCATGTATATATATATATAT
1 ATGTATGTATATATATACATAT
1557220 ATGTATGTAT
1 ATGTATGTAT
1557230 GCATGTATGT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.37, C:0.06, G:0.13, T:0.44
Consensus pattern (22 bp):
ATGTATGTATATATATACATAT
Found at i:1557253 original size:16 final size:16
Alignment explanation
Indices: 1557176--1557243 Score: 54
Period size: 16 Copynumber: 4.5 Consensus size: 16
1557166 TTGCAAATTC
*
1557176 ATGTATGTA--CATAT
1 ATGTATGTATGCATGT
* *
1557190 ATGCATATATGCATGT
1 ATGTATGTATGCATGT
* * *
1557206 ATATATATAT--ATAT
1 ATGTATGTATGCATGT
1557220 ATGTATGTATGCATGT
1 ATGTATGTATGCATGT
1557236 ATGTATGT
1 ATGTATGT
1557244 GTGTGTGTAT
Statistics
Matches: 41, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
14 18 0.44
16 23 0.56
ACGTcount: A:0.34, C:0.06, G:0.16, T:0.44
Consensus pattern (16 bp):
ATGTATGTATGCATGT
Found at i:1557402 original size:2 final size:2
Alignment explanation
Indices: 1557397--1557422 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1557387 GTATGTATGC
1557397 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
1557423 TTAACTACTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1557513 original size:186 final size:191
Alignment explanation
Indices: 1557068--1557610 Score: 688
Period size: 195 Copynumber: 2.8 Consensus size: 191
1557058 CAAACTACAG
* *
1557068 AATTCAATGGAGTTGTATTCTTTGTTCCAATAGTGGAGCTTTGAGCCTAACTGTGGCTGACTCTT
1 AATTCAATGGAGCTGTATTCTTTGTTCCAGTAGTGGAGCTTTGAGCCTAACTGTGGCTGACTCTT
* * *
1557133 TGCTGCTTCACTTTATCTTATCTTGCTGTTTTTTTGCAAATTCATGTATGTACATATATGCATAT
66 TGCTGCTCCACTTTATCTTATCTTGCTGTTTTTTTGCAAATTCATGTATGTATATATATGCATGT
* * * * * * ** * *
1557198 ATGCATGTATATATATATATATATGTATGTATGCATGTATGTATGTGTGTGTGTATATATGT
131 ATGCATATATATATATATATATATATATATATACATCTATGAATGTGTGTCAG-ATACATGC
* *
1557260 ATATTTTCAATGGAGCTGTATTCTTTGTTCCAGTATTGGAGCTTTGAGCCTAACTGTGGTTGACT
1 A-A--TTCAATGGAGCTGTATTCTTTGTTCCAGTAGTGGAGCTTTGAGCCTAACTGTGGCTGACT
* * * * *
1557325 CTTTGCTGCTCCACTTCATCTTATCTTGCTATTTTTTTTGCAAGTTCATGTA-GTATATACATGT
63 CTTTGCTGCTCCACTTTATCTTATCTTGCT-GTTTTTTTGCAAATTCATGTATGTATATATATGC
* *
1557389 ATGTATGCATATATATATATATATATATATATATTTA-ACTACTAT-AAT-T-T-TCAG-TGCA-
127 ATGTATGCATATATATATATATATATATATATATATACA-T-CTATGAATGTGTGTCAGATACAT
1557447 GC
190 GC
* *
1557449 AATTCAATGGAGCTGCATTCTTTGTTCCAGTAGTGGAGCTTTGAGCATAACTGTGGCTGACTCTT
1 AATTCAATGGAGCTGTATTCTTTGTTCCAGTAGTGGAGCTTTGAGCCTAACTGTGGCTGACTCTT
1557514 TGCTGCTCCACTTTATCTTATCTTGCTGTTTTTTTGCAAATTCATGTATGTATATATATGCATGT
66 TGCTGCTCCACTTTATCTTATCTTGCTGTTTTTTTGCAAATTCATGTATGTATATATATGCATGT
** * * *
1557579 ATGCATGCATGTATGTATGTATATATATATAT
131 ATGCATATATATATATATATATATATATATAT
1557611 GTGTGTATGC
Statistics
Matches: 305, Mismatches: 39, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
185 19 0.06
186 125 0.41
188 1 0.00
189 2 0.01
190 2 0.01
192 3 0.01
193 2 0.01
194 2 0.01
195 127 0.42
196 22 0.07
ACGTcount: A:0.24, C:0.14, G:0.17, T:0.44
Consensus pattern (191 bp):
AATTCAATGGAGCTGTATTCTTTGTTCCAGTAGTGGAGCTTTGAGCCTAACTGTGGCTGACTCTT
TGCTGCTCCACTTTATCTTATCTTGCTGTTTTTTTGCAAATTCATGTATGTATATATATGCATGT
ATGCATATATATATATATATATATATATATATACATCTATGAATGTGTGTCAGATACATGC
Found at i:1557566 original size:4 final size:4
Alignment explanation
Indices: 1557557--1557736 Score: 59
Period size: 4 Copynumber: 46.2 Consensus size: 4
1557547 TTGCAAATTC
* * * *
1557557 ATGT ATGT A--T ATAT ATGC ATGT ATGC ATGC ATGT ATGT ATGT A--T
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
* * * * **
1557601 ATAT ATAT ATGT GTGT ATGC ATGT ATGT ATGT ATAC ATGT -TGT A--T
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
* * * * * * * **
1557646 ATAT ATTT ATGT ATGCAT ATAT ATTT ATGT ATGC ATAT ATAT ATGT ACAT
1 ATGT ATGT ATGT ATG--T ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
* * * * * * *
1557696 GTGT GTGT ATAT ATAT ATAT ATAT ATAT ATGT ATGT ATGT A
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A
1557737 ACTGCTATTA
Statistics
Matches: 136, Mismatches: 31, Indels: 18
0.74 0.17 0.10
Matches are distributed among these distances:
2 6 0.04
3 3 0.02
4 124 0.91
6 3 0.02
ACGTcount: A:0.32, C:0.04, G:0.17, T:0.47
Consensus pattern (4 bp):
ATGT
Found at i:1557600 original size:34 final size:34
Alignment explanation
Indices: 1557557--1557635 Score: 122
Period size: 34 Copynumber: 2.3 Consensus size: 34
1557547 TTGCAAATTC
*
1557557 ATGTATGTATATATATGCATGTATGCATGCATGT
1 ATGTATGTATATATATACATGTATGCATGCATGT
* * *
1557591 ATGTATGTATATATATATATGTGTGTATGCATGT
1 ATGTATGTATATATATACATGTATGCATGCATGT
1557625 ATGTATGTATA
1 ATGTATGTATA
1557636 CATGTTGTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 41 1.00
ACGTcount: A:0.30, C:0.05, G:0.20, T:0.44
Consensus pattern (34 bp):
ATGTATGTATATATATACATGTATGCATGCATGT
Found at i:1557629 original size:12 final size:12
Alignment explanation
Indices: 1557570--1557631 Score: 65
Period size: 12 Copynumber: 5.3 Consensus size: 12
1557560 TATGTATATA
1557570 TATGCATGTATG
1 TATGCATGTATG
*
1557582 CATGCATGTATG
1 TATGCATGTATG
* * *
1557594 TATGTATATATA
1 TATGCATGTATG
*
1557606 TAT--ATGTGTG
1 TATGCATGTATG
1557616 TATGCATGTATG
1 TATGCATGTATG
1557628 TATG
1 TATG
1557632 TATACATGTT
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
10 7 0.18
12 32 0.82
ACGTcount: A:0.27, C:0.06, G:0.23, T:0.44
Consensus pattern (12 bp):
TATGCATGTATG
Found at i:1557667 original size:16 final size:17
Alignment explanation
Indices: 1557646--1557692 Score: 69
Period size: 18 Copynumber: 2.8 Consensus size: 17
1557636 CATGTTGTAT
1557646 ATATATTTATGTATGCA
1 ATATATTTATGTATGCA
1557663 TATATATTTATGTATGC-
1 -ATATATTTATGTATGCA
*
1557680 ATATATATATGTA
1 ATATATTTATGTA
1557693 CATGTGTGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
16 12 0.43
18 16 0.57
ACGTcount: A:0.36, C:0.04, G:0.11, T:0.49
Consensus pattern (17 bp):
ATATATTTATGTATGCA
Found at i:1558393 original size:13 final size:13
Alignment explanation
Indices: 1558375--1558409 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
1558365 TTCAATTTGA
1558375 ATTAAATTTATAT
1 ATTAAATTTATAT
*
1558388 ATTAAATATATAT
1 ATTAAATTTATAT
1558401 ATTAAATTT
1 ATTAAATTT
1558410 GAATCATATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (13 bp):
ATTAAATTTATAT
Found at i:1558495 original size:19 final size:21
Alignment explanation
Indices: 1558459--1558499 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
1558449 TCGATAGAAA
*
1558459 ATATATTTTTTAATAATTTTT
1 ATATATATTTTAATAATTTTT
1558480 ATATATATTTT-A-AATTTTT
1 ATATATATTTTAATAATTTTT
1558499 A
1 A
1558500 AAAAATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
20 1 0.05
21 10 0.53
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (21 bp):
ATATATATTTTAATAATTTTT
Found at i:1558560 original size:22 final size:24
Alignment explanation
Indices: 1558528--1558575 Score: 73
Period size: 22 Copynumber: 2.1 Consensus size: 24
1558518 TTATAATAAA
*
1558528 TTTATTTAAAT-ATAT-TAAAATT
1 TTTATTAAAATAATATATAAAATT
1558550 TTTATTAAAATAATATATAAAATT
1 TTTATTAAAATAATATATAAAATT
1558574 TT
1 TT
1558576 AAAAATTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 10 0.43
23 4 0.17
24 9 0.39
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (24 bp):
TTTATTAAAATAATATATAAAATT
Found at i:1563471 original size:30 final size:30
Alignment explanation
Indices: 1563437--1563494 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
1563427 TACCTACCTA
* *
1563437 ATCTTTATTAATTTAATCCCAAGTCTCTTT
1 ATCTTTACTAATTTAATCCCAAGACTCTTT
*
1563467 ATCTTTCCTAATTTAATCCCAAGACTCT
1 ATCTTTACTAATTTAATCCCAAGACTCT
1563495 AGAAATTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.24, G:0.03, T:0.45
Consensus pattern (30 bp):
ATCTTTACTAATTTAATCCCAAGACTCTTT
Found at i:1568106 original size:60 final size:60
Alignment explanation
Indices: 1568013--1568194 Score: 274
Period size: 60 Copynumber: 3.0 Consensus size: 60
1568003 CCATGATCAG
*
1568013 TACTTGAGGATGTACGCTCTGGAGGTCTCACAGATTTCCCTTGCTTTGGATGTCCAACAT
1 TACTTGAGGATGTACGCTCTGGAGGTCTCACAGATTTCCCTTGCTTTGGATGTGCAACAT
* * * *
1568073 TACTTGCGGATGTACGCTCTGGAGTTCTCACAGATTTCCCTTGTTTTGGATGTGCAATAT
1 TACTTGAGGATGTACGCTCTGGAGGTCTCACAGATTTCCCTTGCTTTGGATGTGCAACAT
** * * *
1568133 TACTTGAGGACATACACTCTGAAGGTCTCACAGATTTCCCTTGCTTTGTATGTGCAACAT
1 TACTTGAGGATGTACGCTCTGGAGGTCTCACAGATTTCCCTTGCTTTGGATGTGCAACAT
1568193 TA
1 TA
1568195 TTAGAGCGTT
Statistics
Matches: 108, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
60 108 1.00
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.35
Consensus pattern (60 bp):
TACTTGAGGATGTACGCTCTGGAGGTCTCACAGATTTCCCTTGCTTTGGATGTGCAACAT
Found at i:1574349 original size:13 final size:14
Alignment explanation
Indices: 1574325--1574353 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
1574315 AACTCTAAAG
1574325 AACAATATATAATC
1 AACAATATATAATC
1574339 AACAA-ATATAATC
1 AACAATATATAATC
1574352 AA
1 AA
1574354 ACCATGAGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.62, C:0.14, G:0.00, T:0.24
Consensus pattern (14 bp):
AACAATATATAATC
Found at i:1575555 original size:11 final size:11
Alignment explanation
Indices: 1575541--1575577 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
1575531 TTTATAAATT
1575541 ATTTAAATTTA
1 ATTTAAATTTA
**
1575552 ATTTAAATAAA
1 ATTTAAATTTA
1575563 ATTTAAATTTA
1 ATTTAAATTTA
1575574 ATTT
1 ATTT
1575578 GATTGTTGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (11 bp):
ATTTAAATTTA
Found at i:1576455 original size:25 final size:26
Alignment explanation
Indices: 1576407--1576455 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
1576397 ATATCGTATA
* * *
1576407 AAATATTATTTTATATTTTTTATATT
1 AAATATTATGTTATAATTTATATATT
1576433 AAATA-TATGTTATAATTTATATA
1 AAATATTATGTTATAATTTATATA
1576456 AATATAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 15 0.75
26 5 0.25
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (26 bp):
AAATATTATGTTATAATTTATATATT
Found at i:1576468 original size:22 final size:23
Alignment explanation
Indices: 1576425--1576469 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
1576415 TTTTATATTT
***
1576425 TTTATATTAAATATATGTTATAA
1 TTTATATTAAATATAAAATATAA
1576448 TTTATA-TAAATATAAAATATAA
1 TTTATATTAAATATAAAATATAA
1576470 AATATTAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (23 bp):
TTTATATTAAATATAAAATATAA
Found at i:1576525 original size:23 final size:23
Alignment explanation
Indices: 1576498--1576551 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 23
1576488 ATTATTTATG
1576498 ATTTTT-TAATTTTAAATATATT
1 ATTTTTATAATTTTAAATATATT
* **
1576520 ATTTTTATATTTTTATTTATATT
1 ATTTTTATAATTTTAAATATATT
1576543 ATTTTTATA
1 ATTTTTATA
1576552 TTATATCATT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 6 0.21
23 22 0.79
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (23 bp):
ATTTTTATAATTTTAAATATATT
Found at i:1576530 original size:11 final size:11
Alignment explanation
Indices: 1576514--1576555 Score: 66
Period size: 11 Copynumber: 3.7 Consensus size: 11
1576504 TAATTTTAAA
1576514 TATATTATTTT
1 TATATTATTTT
*
1576525 TATATTTTTATT
1 TATATTATT-TT
1576537 TATATTATTTT
1 TATATTATTTT
1576548 TATATTAT
1 TATATTAT
1576556 ATCATTATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
11 18 0.64
12 10 0.36
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TATATTATTTT
Found at i:1576555 original size:16 final size:15
Alignment explanation
Indices: 1576518--1576557 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
1576508 TTTAAATATA
*
1576518 TTATTTTTA-TATTT
1 TTATTTATATTATTT
1576532 TTATTTATATTATTT
1 TTATTTATATTATTT
1576547 TTATATTATAT
1 TTAT-TTATAT
1576558 CATTATATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 8 0.35
15 9 0.39
16 6 0.26
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (15 bp):
TTATTTATATTATTT
Found at i:1577155 original size:17 final size:17
Alignment explanation
Indices: 1577134--1577176 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
1577124 ATTTAGTATA
1577134 ATTTTTATAAAATATTAT
1 ATTTTTATAAAA-ATTAT
*
1577152 -TTTTTATTATAAATTAT
1 ATTTTTA-TAAAAATTAT
1577169 ATTTTTAT
1 ATTTTTAT
1577177 TAAGTTAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
ATTTTTATAAAAATTAT
Found at i:1577173 original size:18 final size:19
Alignment explanation
Indices: 1577134--1577179 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 19
1577124 ATTTAGTATA
1577134 ATTTTTA-TAAAATATTAT
1 ATTTTTATTAAAATATTAT
*
1577152 -TTTTTATTATAA-ATTAT
1 ATTTTTATTAAAATATTAT
1577169 ATTTTTATTAA
1 ATTTTTATTAA
1577180 GTTAATACCT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
ATTTTTATTAAAATATTAT
Found at i:1579046 original size:30 final size:31
Alignment explanation
Indices: 1579010--1579083 Score: 132
Period size: 31 Copynumber: 2.4 Consensus size: 31
1579000 AGTTAATTTA
*
1579010 ATTTATTAAAATTTATATTTT-TTGATGATT
1 ATTTATTAAAATTTAAATTTTATTGATGATT
1579040 ATTTATTAAAATTTAAATTTTATTGATGATT
1 ATTTATTAAAATTTAAATTTTATTGATGATT
1579071 ATTTATTAAAATT
1 ATTTATTAAAATT
1579084 ATTTTAAATA
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
30 20 0.48
31 22 0.52
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (31 bp):
ATTTATTAAAATTTAAATTTTATTGATGATT
Found at i:1582054 original size:18 final size:18
Alignment explanation
Indices: 1582006--1582060 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
1581996 TATTTTTTAT
* *
1582006 TAATATAAATTATAATATA
1 TAATTTAAA-TATAAAATA
**
1582025 TAATTTTTATATAAAATA
1 TAATTTAAATATAAAATA
1582043 TAATTTAAATATATAAAT
1 TAATTTAAATATA-AAAT
1582061 TTAAATATTT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
18 19 0.66
19 10 0.34
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
TAATTTAAATATAAAATA
Found at i:1588356 original size:19 final size:19
Alignment explanation
Indices: 1588332--1588371 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
1588322 CACTTTTTAT
1588332 GAGGGGTTGTTGTGAAGAA
1 GAGGGGTTGTTGTGAAGAA
1588351 GAGGGGTTGTTGTGAAGAA
1 GAGGGGTTGTTGTGAAGAA
1588370 GA
1 GA
1588372 TAAGTAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.47, T:0.25
Consensus pattern (19 bp):
GAGGGGTTGTTGTGAAGAA
Found at i:1589219 original size:42 final size:42
Alignment explanation
Indices: 1589172--1589256 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
1589162 AAGTGCAAGT
1589172 ACTACACCTAGGGCCAGTAG-TGCTGAAAGTTGAAAACAAACA
1 ACTACACCTAGGGCCAGT-GCTGCTGAAAGTTGAAAACAAACA
1589214 ACTACACCTAGGGCCAGTGCTGCTGAAAGTTGAAAACAAACA
1 ACTACACCTAGGGCCAGTGCTGCTGAAAGTTGAAAACAAACA
1589256 A
1 A
1589257 ACAATTCCAC
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
41 1 0.02
42 41 0.98
ACGTcount: A:0.40, C:0.22, G:0.21, T:0.16
Consensus pattern (42 bp):
ACTACACCTAGGGCCAGTGCTGCTGAAAGTTGAAAACAAACA
Found at i:1597089 original size:42 final size:45
Alignment explanation
Indices: 1597013--1597096 Score: 129
Period size: 42 Copynumber: 1.9 Consensus size: 45
1597003 TCTTTCTCTA
1597013 TTTCAAATTAAGATTTTTTTTATAAAATAAATAATTCAAATTCAT
1 TTTCAAATTAAGATTTTTTTTATAAAATAAATAATTCAAATTCAT
* *
1597058 TTTCAAGTTACGA-TTTTTTTAT-AAAT-AATAATTCAAATT
1 TTTCAAATTAAGATTTTTTTTATAAAATAAATAATTCAAATT
1597097 GATACAAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
42 13 0.35
43 4 0.11
44 9 0.24
45 11 0.30
ACGTcount: A:0.42, C:0.07, G:0.04, T:0.48
Consensus pattern (45 bp):
TTTCAAATTAAGATTTTTTTTATAAAATAAATAATTCAAATTCAT
Found at i:1605976 original size:265 final size:267
Alignment explanation
Indices: 1605501--1606036 Score: 923
Period size: 265 Copynumber: 2.0 Consensus size: 267
1605491 ATTTTTTTAA
* *
1605501 ATTAATTTTTTTAGTTTTAAATTGTTTCATTTCATTTATCTTTATATCTATTTTATGTCATTAAT
1 ATTAATTTTTTAAGTTTTAAATTGTTTCATTTCATTTATCTTTATATCAATTTTATGTCATTAAT
*
1605566 TAAAAAAAAATCAATTTTCGAGTTTGTATATAATGTCGTCATTGGGAAGAGTTGGCTTTATATAG
66 TAAAAAAAAATCAATTTTCGAGTTTGTATATAATGTCGTCATTGGGAAGAGATGGCTTTATATAG
* *
1605631 AAAATGTGATTCATGTGCTAGAGTGCTTAGATTTTTGGAGGAGATTGATAGAGTAATGAAGTCAG
131 AAAATGTGATTCATGTGCTAGAGTGATTAGATTTTCGGAGGAGATTGATAGAGTAATGAAGTCAG
* *
1605696 AGTTGCTTTAATTTTTTGCCTTTTCCTATATGCTTTCAGCATACATACAAGCAAGCCTTGCAGTA
196 AGTTGCTTTAATTTTTTGCCTTTTCCTATATGCTTTCAGCATACATACAAACAAGCCCTGCAGTA
1605761 TTACAAG
261 TTACAAG
** **
1605768 ATTAATTTTTTAAGTTTTAAATTGTTTTGTTTCATTTATC-TTATAT-AATTTTATGTTGTTAAT
1 ATTAATTTTTTAAGTTTTAAATTGTTTCATTTCATTTATCTTTATATCAATTTTATGTCATTAAT
* *
1605831 TAAAAAAAAATCAATTTTCGAGTTTGTATATAATGTTGTCTTTGGGAAGAGATGGCTTTATATAG
66 TAAAAAAAAATCAATTTTCGAGTTTGTATATAATGTCGTCATTGGGAAGAGATGGCTTTATATAG
*
1605896 AAAATGTGATTCATGTGCTAGAGTGATTAGATTTTCGGAGGAGATTGATCGAGTAATGAAGTCAG
131 AAAATGTGATTCATGTGCTAGAGTGATTAGATTTTCGGAGGAGATTGATAGAGTAATGAAGTCAG
*
1605961 AGTTGCTTTAATTTTTTGCCTTTTCCTATATGTTTTCAGCATACATACAAACAAGCCCTGCAGTA
196 AGTTGCTTTAATTTTTTGCCTTTTCCTATATGCTTTCAGCATACATACAAACAAGCCCTGCAGTA
1606026 TTACAAG
261 TTACAAG
1606033 ATTA
1 ATTA
1606037 TTCCCAAGCA
Statistics
Matches: 254, Mismatches: 15, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
265 211 0.83
266 6 0.02
267 37 0.15
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.42
Consensus pattern (267 bp):
ATTAATTTTTTAAGTTTTAAATTGTTTCATTTCATTTATCTTTATATCAATTTTATGTCATTAAT
TAAAAAAAAATCAATTTTCGAGTTTGTATATAATGTCGTCATTGGGAAGAGATGGCTTTATATAG
AAAATGTGATTCATGTGCTAGAGTGATTAGATTTTCGGAGGAGATTGATAGAGTAATGAAGTCAG
AGTTGCTTTAATTTTTTGCCTTTTCCTATATGCTTTCAGCATACATACAAACAAGCCCTGCAGTA
TTACAAG
Found at i:1613454 original size:16 final size:16
Alignment explanation
Indices: 1613433--1613465 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
1613423 TCACACGCTT
1613433 TGTGCAAAAGAACAAA
1 TGTGCAAAAGAACAAA
*
1613449 TGTGCAAAAGAATAAA
1 TGTGCAAAAGAACAAA
1613465 T
1 T
1613466 TCAGCATGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.55, C:0.09, G:0.18, T:0.18
Consensus pattern (16 bp):
TGTGCAAAAGAACAAA
Found at i:1617376 original size:36 final size:36
Alignment explanation
Indices: 1617316--1617387 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 36
1617306 ATAACTGTTG
* * *
1617316 AGAGTGACTGAAGAGCAGTGATAAAAAACATGGAAA
1 AGAGTGACCGAAGAACAGTCATAAAAAACATGGAAA
*
1617352 AGAGTGACCGCAGAACAGTCATAAAAAACATGGAAA
1 AGAGTGACCGAAGAACAGTCATAAAAAACATGGAAA
1617388 GATGACTTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.50, C:0.12, G:0.25, T:0.12
Consensus pattern (36 bp):
AGAGTGACCGAAGAACAGTCATAAAAAACATGGAAA
Found at i:1622353 original size:18 final size:19
Alignment explanation
Indices: 1622330--1622369 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
1622320 TAAGTTTAAA
1622330 CAAATT-GAAATGATTTTT
1 CAAATTCGAAATGATTTTT
* *
1622348 CAAATTCGAATTGGTTTTT
1 CAAATTCGAAATGATTTTT
1622367 CAA
1 CAA
1622370 TTTTATATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.42
Consensus pattern (19 bp):
CAAATTCGAAATGATTTTT
Found at i:1623200 original size:2 final size:2
Alignment explanation
Indices: 1623193--1623221 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1623183 AAGTTTCTTT
1623193 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1623222 TACATGGACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1623415 original size:21 final size:21
Alignment explanation
Indices: 1623386--1623425 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
1623376 ACACACACAC
1623386 ATATATATATATATATATTTT
1 ATATATATATATATATATTTT
* *
1623407 ATATTTATATTTATATATT
1 ATATATATATATATATATT
1623426 CTAGTCAACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
ATATATATATATATATATTTT
Found at i:1623577 original size:2 final size:2
Alignment explanation
Indices: 1623570--1623610 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
1623560 AGAGATCTTT
1623570 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1623611 TGTCTGGTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1625254 original size:26 final size:24
Alignment explanation
Indices: 1625224--1625281 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
1625214 AGGGAGAAGA
**
1625224 AGAGAAAAGAAAGGAAAAAAATGAG
1 AGAGAAAAGAAA-GAAAAAAAAAAG
1625249 AGGAGAAAA-AAAGAAAAAAAAAAG
1 A-GAGAAAAGAAAGAAAAAAAAAAG
1625273 AGAGAAAAG
1 AGAGAAAAG
1625282 GGAAAAACTA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
23 7 0.24
24 11 0.38
25 4 0.14
26 7 0.24
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.02
Consensus pattern (24 bp):
AGAGAAAAGAAAGAAAAAAAAAAG
Found at i:1625349 original size:18 final size:19
Alignment explanation
Indices: 1625326--1625391 Score: 63
Period size: 17 Copynumber: 3.7 Consensus size: 19
1625316 TCGACTAAGG
1625326 AAAGAAGGAGAAAAA-AA-A
1 AAAGAAGGA-AAAAAGAAGA
*
1625344 AAAGAAAGAAAAAAGAAGA
1 AAAGAAGGAAAAAAGAAGA
*
1625363 AAAGAA-G-AAAAAGGAGA
1 AAAGAAGGAAAAAAGAAGA
1625380 AAA-AA-GAAAAAA
1 AAAGAAGGAAAAAA
1625392 TGATTTGAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
16 3 0.07
17 22 0.51
18 11 0.26
19 7 0.16
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (19 bp):
AAAGAAGGAAAAAAGAAGA
Found at i:1625358 original size:7 final size:7
Alignment explanation
Indices: 1625336--1625391 Score: 53
Period size: 7 Copynumber: 7.7 Consensus size: 7
1625326 AAAGAAGGAG
1625336 AAAAA-A
1 AAAAAGA
1625342 AAAAAGA
1 AAAAAGA
1625349 AAGAAA-A
1 AA-AAAGA
*
1625356 AAGAAGA
1 AAAAAGA
1625363 AAAGAAGA
1 AAA-AAGA
1625371 AAAAGGAGA
1 AAAA--AGA
1625380 AAAAAGA
1 AAAAAGA
1625387 AAAAA
1 AAAAA
1625392 TGATTTGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
6 7 0.17
7 18 0.43
8 10 0.24
9 7 0.17
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:1625390 original size:8 final size:8
Alignment explanation
Indices: 1625334--1625391 Score: 57
Period size: 8 Copynumber: 7.0 Consensus size: 8
1625324 GGAAAGAAGG
1625334 AGAAAAAA
1 AGAAAAAA
1625342 A-AAAAGAA
1 AGAAAA-AA
1625350 AG-AAAAA
1 AGAAAAAA
*
1625357 AGAAGAAA
1 AGAAAAAA
1625365 AGAAGAAAA
1 AGAA-AAAA
1625374 AGGAGAAAAA
1 A-GA-AAAAA
1625384 AGAAAAAA
1 AGAAAAAA
1625392 TGATTTGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
7 8 0.19
8 20 0.48
9 6 0.14
10 7 0.17
11 1 0.02
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (8 bp):
AGAAAAAA
Found at i:1625785 original size:9 final size:9
Alignment explanation
Indices: 1625773--1625813 Score: 59
Period size: 9 Copynumber: 4.7 Consensus size: 9
1625763 TTTTTTCTTT
1625773 TGTATTTTA
1 TGTATTTTA
1625782 TGTATTTTA
1 TGTATTTTA
1625791 TGTATTTTA
1 TGTATTTTA
1625800 T-TATTATTA
1 TGTATT-TTA
1625809 T-TATT
1 TGTATT
1625814 ATGTATTAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
8 4 0.13
9 27 0.87
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.68
Consensus pattern (9 bp):
TGTATTTTA
Found at i:1625796 original size:18 final size:18
Alignment explanation
Indices: 1625773--1625942 Score: 64
Period size: 18 Copynumber: 9.6 Consensus size: 18
1625763 TTTTTTCTTT
1625773 TGTATTTTATGTATT-TTA
1 TGTATTTTAT-TATTATTA
1625791 TGTATTTTATTATTATTA
1 TGTATTTTATTATTATTA
*
1625809 T-TATTATGTATTAATA-TA
1 TGTATT-T-TATTATTATTA
*
1625827 TGTATATCT-TTA-T-TTA
1 TGTAT-TTTATTATTATTA
*
1625843 TCTA-TTTA-T-TTATTTA
1 TGTATTTTATTATTA-TTA
*
1625859 TTTATTTTATT-TTA-T-
1 TGTATTTTATTATTATTA
* *
1625874 TGTATTTTGTTAATATTTATA
1 TGTATTTTATT-AT-TAT-TA
1625895 TGTATTTTATTTATATAGTTA
1 TGTATTTTA-TTAT-TA-TTA
*
1625916 TATA-TTTATTATTA-TA
1 TGTATTTTATTATTATTA
1625932 T-TATTATTATT
1 TGTATT-TTATT
1625943 TTTTTTATCT
Statistics
Matches: 119, Mismatches: 11, Indels: 45
0.68 0.06 0.26
Matches are distributed among these distances:
14 4 0.03
15 11 0.09
16 17 0.14
17 21 0.18
18 26 0.22
19 14 0.12
20 6 0.05
21 17 0.14
22 3 0.03
ACGTcount: A:0.28, C:0.01, G:0.05, T:0.65
Consensus pattern (18 bp):
TGTATTTTATTATTATTA
Found at i:1625806 original size:24 final size:23
Alignment explanation
Indices: 1625775--1625820 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
1625765 TTTTCTTTTG
1625775 TATTTTATGTATT-TTATGTATTT
1 TATTTTAT-TATTATTATGTATTT
1625798 TATTATTATTATTATTATGTATT
1 TATT-TTATTATTATTATGTATT
1625821 AATATATGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 8 0.38
24 13 0.62
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (23 bp):
TATTTTATTATTATTATGTATTT
Found at i:1625852 original size:4 final size:4
Alignment explanation
Indices: 1625835--1625925 Score: 60
Period size: 4 Copynumber: 21.5 Consensus size: 4
1625825 TATGTATATC
*
1625835 TTTA TTTA TCTA TTTA TTTA TTTA TTTA TTTTA TTTTA TTGTA TTT- TGTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTTA -TTTA TT-TA TTTA T-TTA
* * * *
1625886 -ATA TTTA TATGTA TTTTA TTTA TATA GTTA TATA TTTA TT
1 TTTA TTTA T-T-TA -TTTA TTTA TTTA TTTA TTTA TTTA TT
1625926 ATTATATTAT
Statistics
Matches: 69, Mismatches: 10, Indels: 16
0.73 0.11 0.17
Matches are distributed among these distances:
3 3 0.04
4 46 0.67
5 16 0.23
6 3 0.04
7 1 0.01
ACGTcount: A:0.26, C:0.01, G:0.04, T:0.68
Consensus pattern (4 bp):
TTTA
Found at i:1625901 original size:31 final size:30
Alignment explanation
Indices: 1625852--1625925 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 30
1625842 ATCTATTTAT
* * * *
1625852 TTATTTATTTATTTTATTTTATTGTATTTTG
1 TTATATATTTATTGTATTTTATT-TATATAG
1625883 TTA-ATATTTATATGTATTTTATTTATATAG
1 TTATATATTTAT-TGTATTTTATTTATATAG
1625913 TTATATATTTATT
1 TTATATATTTATT
1625926 ATTATATTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
30 16 0.43
31 21 0.57
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (30 bp):
TTATATATTTATTGTATTTTATTTATATAG
Found at i:1626383 original size:18 final size:18
Alignment explanation
Indices: 1626360--1626402 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
1626350 TTTTTTTTGG
1626360 GAATTTCTGAAAAATTCC
1 GAATTTCTGAAAAATTCC
*
1626378 GAATTTCTGGAAAATTCC
1 GAATTTCTGAAAAATTCC
*
1626396 AAATTTC
1 GAATTTC
1626403 GGTTGAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (18 bp):
GAATTTCTGAAAAATTCC
Found at i:1626914 original size:4 final size:4
Alignment explanation
Indices: 1626903--1626979 Score: 61
Period size: 4 Copynumber: 19.0 Consensus size: 4
1626893 TTTTTTTGGA
* * *
1626903 ATTT -TTT ATTT ATTT GTTT ATTT ATTT ATTT ATTT ATTAG ATTAG ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATT-T ATT-T ATTT
*
1626952 ATTT A-AT ATTT -TTT ATTTT ATCTT ATTT
1 ATTT ATTT ATTT ATTT A-TTT AT-TT ATTT
1626980 TTATTTTTGT
Statistics
Matches: 61, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
3 8 0.13
4 37 0.61
5 16 0.26
ACGTcount: A:0.25, C:0.01, G:0.04, T:0.70
Consensus pattern (4 bp):
ATTT
Found at i:1626981 original size:11 final size:10
Alignment explanation
Indices: 1626967--1627017 Score: 52
Period size: 10 Copynumber: 5.0 Consensus size: 10
1626957 ATATTTTTTA
1626967 TTTTATCTTAT
1 TTTTATCTT-T
*
1626978 TTTTATTTTT
1 TTTTATCTTT
1626988 GTTTTA-CTTT
1 -TTTTATCTTT
1626998 TCTTTAT-TTT
1 T-TTTATCTTT
1627008 TTTTATCTTT
1 TTTTATCTTT
1627018 ACTTATTTTC
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
9 6 0.18
10 15 0.44
11 13 0.38
ACGTcount: A:0.12, C:0.08, G:0.02, T:0.78
Consensus pattern (10 bp):
TTTTATCTTT
Found at i:1627192 original size:117 final size:116
Alignment explanation
Indices: 1627062--1627512 Score: 649
Period size: 117 Copynumber: 3.8 Consensus size: 116
1627052 TAAATAAAAA
* *
1627062 TCAAAAAATATTTTTAAGGAAAAGTT-AGAAGTATCAATTTTTCTTAAAAAT-AAATTTCTAAAA
1 TCAAAAAATATTTTTGAGGAAAAGTTGA-AAGTATCAATTTTCCTTAAAAATAAAATTTC-AAAA
* * *
1627125 AAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAATTT
64 AAA-AGTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTT
* *
1627179 TCGAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAA
1 TCAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAA
*
1627244 AAGTTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC-AAAGTT
66 AAG-TTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTT
1627295 TCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAA
1 TC-AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAA
* *
1627360 AAAGTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCG-AAATTAAAATTT
65 AAAGTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTT
* * ** *
1627411 TAAAAAAATAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAATTTTCAAA
1 TCAAAAAAT--ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAA-TTTCAAA
*
1627476 AAAATAGTTTTGGGGAAAAGTTAAAAGTATCAATTTT
63 AAAA-AGTTTTGGGGAAAAGTTGAAAGTATCAATTTT
1627513 TCCTACACAA
Statistics
Matches: 306, Mismatches: 19, Indels: 16
0.90 0.06 0.05
Matches are distributed among these distances:
115 11 0.04
116 48 0.16
117 197 0.64
118 19 0.06
119 31 0.10
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.35
Consensus pattern (116 bp):
TCAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAA
AAGTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTT
Found at i:1627514 original size:59 final size:58
Alignment explanation
Indices: 1627064--1627512 Score: 593
Period size: 59 Copynumber: 7.7 Consensus size: 58
1627054 AATAAAAATC
** * *
1627064 AAAAAATATTTTTAAGGAAAAGTT-AGAAGTATCAATTTTTCTTAAAAAT-AAATTTCTA
1 AAAAAATATTTTTGGGGAAAAGTTGA-AAGTATCAATTTTCCTTGAAAATAAAATTTC-A
* *
1627122 AAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAATTTTC-
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAAA-TTTCA
* *
1627181 GAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCA
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTCA
*
1627239 AAAAAA-AGTTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCA
1 AAAAAATA-TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAAATTTCA
* *
1627298 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCA
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTCA
* * * *
1627356 AAAAAA-AGTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAATTTTA
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTCA
* * * *
1627413 AAAAAATAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAATTTTCA
1 AAAAAAT--ATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAA-TTTCA
* *
1627474 AAAAAATAGTTTTGGGGAAAAGTTAAAAGTATCAATTTT
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
1627513 TCCTACACAA
Statistics
Matches: 352, Mismatches: 27, Indels: 23
0.88 0.07 0.06
Matches are distributed among these distances:
57 56 0.16
58 106 0.30
59 128 0.36
60 47 0.13
61 15 0.04
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.35
Consensus pattern (58 bp):
AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTCA
Found at i:1629300 original size:10 final size:10
Alignment explanation
Indices: 1629285--1629310 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
1629275 AAAAATTATT
1629285 TTTTAATAAA
1 TTTTAATAAA
1629295 TTTTAATAAA
1 TTTTAATAAA
1629305 TTTTAA
1 TTTTAA
1629311 GATTTTATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (10 bp):
TTTTAATAAA
Found at i:1629337 original size:13 final size:13
Alignment explanation
Indices: 1629319--1629343 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1629309 AAGATTTTAT
1629319 TAAAAAGATAAAC
1 TAAAAAGATAAAC
1629332 TAAAAAGATAAA
1 TAAAAAGATAAA
1629344 TTTTTAGGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.04, G:0.08, T:0.16
Consensus pattern (13 bp):
TAAAAAGATAAAC
Found at i:1631610 original size:119 final size:118
Alignment explanation
Indices: 1631416--1631936 Score: 382
Period size: 119 Copynumber: 4.4 Consensus size: 118
1631406 TAAAATCACA
* * * * * * * ***
1631416 AGTCAAAAAATAAAATGACCAGGACCTAGTCAAGGTCGAAGATGACTAATCGAGATAGAGCCGTG
1 AGTCAAAAAATAAAATGACCAAGATCGAATCAAGGTCGAAGATGATTGATCGGGA-AGAATTGTG
* ** ** * *
1631481 AATCTGAAAATGATCTAGATGAAATTGAGATTGAATGACTAAGATGAAACTATT
65 AGTCAAAAAATGATCTAGATGAAATTGAGATCAAATGACTAAGACGAAACTATG
* ** * *
1631535 AGTCAACAAATAAAATGACCAAGATCGAATTGAGGTCGAAGATGATTGATCGGGACAGAATCGTA
1 AGTCAAAAAATAAAATGACCAAGATCGAATCAAGGTCGAAGATGATTGATCGGGA-AGAATTGTG
* ** * * *
1631600 AGTCAAAAAATGATCTGGATGAAATCAAGATCAAAT-AATCGAGACGAAACCATG
65 AGTCAAAAAATGATCTAGATGAAATTGAGATCAAATGACT-AAGACGAAACTATG
** * * * * * * *
1631654 AGTCAAAAAATAAAGCGATCAAAATTGAATCAAGGTCGAAGATTATTGACCAGGAAGAAATTGCG
1 AGTCAAAAAATAAAATGACCAAGATCGAATCAAGGTCGAAGATGATTGATCGGGAAG-AATTGTG
* * * * * * * *
1631719 AGTCAAGAAATGATTTGGATGAAATTGAGATTAAATGATTGAGACAAAATTATG
65 AGTCAAAAAATGATCTAGATGAAATTGAGATCAAATGACTAAGACGAAACTATG
* * ** * * * * * * *
1631773 AGTCAAAAACTAAAATGACCAAGACCGTTTCGAGGTCGAAGATAACTAATCGAGATAAAATTATG
1 AGTCAAAAAATAAAATGACCAAGATCGAATCAAGGTCGAAGATGATTGATCGGGA-AGAATTGTG
* * * * * *
1631838 AGTCAAAAAATGATCTAGATTG-AGTTGAGATCGAATGATCGAA-ATGAAATTACG
65 AGTCAAAAAATGATCTAGA-TGAAATTGAGATCAAATGA-CTAAGACGAAACTATG
* *
1631892 AGTCAAAAAATAAAGTGACCAAGATCGAGTCAAGGTCGAAGATGA
1 AGTCAAAAAATAAAATGACCAAGATCGAATCAAGGTCGAAGATGA
1631937 CCAGGATAGA
Statistics
Matches: 308, Mismatches: 88, Indels: 12
0.75 0.22 0.03
Matches are distributed among these distances:
118 4 0.01
119 298 0.97
120 6 0.02
ACGTcount: A:0.44, C:0.12, G:0.22, T:0.22
Consensus pattern (118 bp):
AGTCAAAAAATAAAATGACCAAGATCGAATCAAGGTCGAAGATGATTGATCGGGAAGAATTGTGA
GTCAAAAAATGATCTAGATGAAATTGAGATCAAATGACTAAGACGAAACTATG
Found at i:1631844 original size:238 final size:238
Alignment explanation
Indices: 1631488--1631934 Score: 522
Period size: 238 Copynumber: 1.9 Consensus size: 238
1631478 GTGAATCTGA
* ** *
1631488 AAATGATCTAGATGAAATTGAGATTGAATGACTAAGATGAAACTATTAGTCAACAAATAAAATGA
1 AAATGATCTAGATGAAATTGAGATTAAATGACTAAGACAAAACTATGAGTCAACAAATAAAATGA
* * * * * * * *
1631553 CCAAGATCGAATTGAGGTCGAAGATGATTGATCGGGACAGAATCGTAAGTCAAAAAATGATCTGG
66 CCAAGACCGAATTGAGGTCGAAGATAACTAATCGAGACAAAATCATAAGTCAAAAAATGATCTAG
* * * *
1631618 A-TGAAATCAAGATCAAATAATCGAGACGAAACCATGAGTCAAAAAATAAAGCGATCAAAATTGA
131 ATTG-AATCAAGATCAAATAATCGAAACGAAACCACGAGTCAAAAAATAAAGCGACCAAAATCGA
1631682 ATCAAGGTCGAAGATTATTGACCAGGAAGAAATTGCGAGTCAAG
195 ATCAAGGTCGAAGATTATTGACCAGGAAGAAATTGCGAGTCAAG
* * * * *
1631726 AAATGATTTGGATGAAATTGAGATTAAATGATTGAGACAAAATTATGAGTCAA-AAACTAAAATG
1 AAATGATCTAGATGAAATTGAGATTAAATGACTAAGACAAAACTATGAGTCAACAAA-TAAAATG
* * * *
1631790 ACCAAGACCG-TTTCGAGGTCGAAGATAACTAATCGAGATAAAATTATGAGTCAAAAAATGATCT
65 ACCAAGACCGAATT-GAGGTCGAAGATAACTAATCGAGACAAAATCATAAGTCAAAAAATGATCT
* ** * * * ** * *
1631854 AGATTGAGTTGAGATCGAATGATCGAAATGAAATTACGAGTCAAAAAATAAAGTGACCAAGATCG
129 AGATTGAATCAAGATCAAATAATCGAAACGAAACCACGAGTCAAAAAATAAAGCGACCAAAATCG
*
1631919 AGTCAAGGTCGAAGAT
194 AATCAAGGTCGAAGAT
1631935 GACCAGGATA
Statistics
Matches: 170, Mismatches: 36, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
237 5 0.03
238 163 0.96
239 2 0.01
ACGTcount: A:0.45, C:0.11, G:0.21, T:0.23
Consensus pattern (238 bp):
AAATGATCTAGATGAAATTGAGATTAAATGACTAAGACAAAACTATGAGTCAACAAATAAAATGA
CCAAGACCGAATTGAGGTCGAAGATAACTAATCGAGACAAAATCATAAGTCAAAAAATGATCTAG
ATTGAATCAAGATCAAATAATCGAAACGAAACCACGAGTCAAAAAATAAAGCGACCAAAATCGAA
TCAAGGTCGAAGATTATTGACCAGGAAGAAATTGCGAGTCAAG
Found at i:1632775 original size:16 final size:17
Alignment explanation
Indices: 1632740--1632777 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
1632730 TAAGTATTCC
*
1632740 TTTTTCTTCCTTTGTCT
1 TTTTTCTTCCTTTGTAT
*
1632757 TTTTTCTT-CTTTTTAT
1 TTTTTCTTCCTTTGTAT
1632773 TTTTT
1 TTTTT
1632778 TTTTTGTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.03, C:0.16, G:0.03, T:0.79
Consensus pattern (17 bp):
TTTTTCTTCCTTTGTAT
Found at i:1632782 original size:21 final size:21
Alignment explanation
Indices: 1632756--1632801 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
1632746 TTCCTTTGTC
1632756 TTTTTTCT-TCTTTTTATTTTT
1 TTTTTTCTAT-TTTTTATTTTT
*
1632777 TTTTTTGTAATTTTTTATTTTT
1 TTTTTTCT-ATTTTTTATTTTT
1632799 TTT
1 TTT
1632802 ACCTTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 7 0.32
22 14 0.64
23 1 0.05
ACGTcount: A:0.09, C:0.04, G:0.02, T:0.85
Consensus pattern (21 bp):
TTTTTTCTATTTTTTATTTTT
Found at i:1632801 original size:31 final size:32
Alignment explanation
Indices: 1632756--1632817 Score: 81
Period size: 31 Copynumber: 1.9 Consensus size: 32
1632746 TTCCTTTGTC
* *
1632756 TTTTTTCTTCTTTTTA-TTTTTTTTTTTGTAA
1 TTTTTTATTCTTTTTACTTTTTTTGTTTGTAA
*
1632787 TTTTTTATTTTTTTTACCTTTTTTTGTTTGT
1 TTTTTTATTCTTTTTA-CTTTTTTTGTTTGT
1632818 TTTTTTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 14 0.54
33 12 0.46
ACGTcount: A:0.08, C:0.06, G:0.05, T:0.81
Consensus pattern (32 bp):
TTTTTTATTCTTTTTACTTTTTTTGTTTGTAA
Found at i:1633657 original size:10 final size:11
Alignment explanation
Indices: 1633632--1633656 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1633622 TAGAATAAAT
1633632 AAAAGGTATGA
1 AAAAGGTATGA
1633643 AAAAGGTATGA
1 AAAAGGTATGA
1633654 AAA
1 AAA
1633657 GATAAAAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.00, G:0.24, T:0.16
Consensus pattern (11 bp):
AAAAGGTATGA
Found at i:1637098 original size:18 final size:19
Alignment explanation
Indices: 1637063--1637104 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
1637053 TAAAATTCTC
*
1637063 AAAAACAAAACTGAAAAAAT
1 AAAAAAAAAACT-AAAAAAT
1637083 AAAAAAAAAACT-AAAAAT
1 AAAAAAAAAACTAAAAAAT
1637101 AAAA
1 AAAA
1637105 TAAGCTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 10 0.48
20 11 0.52
ACGTcount: A:0.81, C:0.07, G:0.02, T:0.10
Consensus pattern (19 bp):
AAAAAAAAAACTAAAAAAT
Found at i:1637104 original size:16 final size:16
Alignment explanation
Indices: 1637085--1637120 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
1637075 GAAAAAATAA
1637085 AAAAAAAACTAAAAAT
1 AAAAAAAACTAAAAAT
* *
1637101 AAAATAAGCTAAAAAT
1 AAAAAAAACTAAAAAT
1637117 AAAA
1 AAAA
1637121 TCAAATCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.78, C:0.06, G:0.03, T:0.14
Consensus pattern (16 bp):
AAAAAAAACTAAAAAT
Found at i:1637561 original size:30 final size:32
Alignment explanation
Indices: 1637526--1637587 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 32
1637516 AAATATTATT
* * *
1637526 TTTAAATAT-TAGTTTTTTAAA-ATATAAATA
1 TTTAAATATATAATTATATAAATATATAAATA
1637556 TTTAAATATATAATTATATAAATATATAAATA
1 TTTAAATATATAATTATATAAATATATAAATA
1637588 AAAATTAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 9 0.33
31 9 0.33
32 9 0.33
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (32 bp):
TTTAAATATATAATTATATAAATATATAAATA
Found at i:1637563 original size:8 final size:8
Alignment explanation
Indices: 1637543--1637587 Score: 65
Period size: 8 Copynumber: 5.8 Consensus size: 8
1637533 ATTAGTTTTT
1637543 TAAA-ATA
1 TAAATATA
*
1637550 TAAATATT
1 TAAATATA
1637558 TAAATATA
1 TAAATATA
*
1637566 TAATTATA
1 TAAATATA
1637574 TAAATATA
1 TAAATATA
1637582 TAAATA
1 TAAATA
1637588 AAAATTAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
7 4 0.12
8 29 0.88
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (8 bp):
TAAATATA
Found at i:1637628 original size:21 final size:20
Alignment explanation
Indices: 1637573--1637628 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 20
1637563 ATATAATTAT
*
1637573 ATAAATATATA-AATAAAAA
1 ATAATTATATATAATAAAAA
* * *
1637592 TTAATTAAATAAAATAAAAA
1 ATAATTATATATAATAAAAA
*
1637612 ATAATTTTTATATAATA
1 ATAA-TTATATATAATA
1637629 TCGGATCGGG
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
19 8 0.29
20 11 0.39
21 9 0.32
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
ATAATTATATATAATAAAAA
Found at i:1638495 original size:3 final size:3
Alignment explanation
Indices: 1638487--1638553 Score: 52
Period size: 3 Copynumber: 23.7 Consensus size: 3
1638477 TATAATACAC
* * *
1638487 TAA TAA TAA TAA T-A TAA TAA TGA TAC T-A TAA T-A TAG TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
1638532 TTA TAA CAA AAA TAA TAA -AA TA
1 TAA TAA TAA TAA TAA TAA TAA TA
1638554 CGATCCAATT
Statistics
Matches: 49, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
2 7 0.14
3 42 0.86
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:1638503 original size:11 final size:11
Alignment explanation
Indices: 1638489--1638553 Score: 50
Period size: 11 Copynumber: 6.1 Consensus size: 11
1638479 TAATACACTA
1638489 ATAATAATAAT
1 ATAATAATAAT
*
1638500 ATAATAATGAT
1 ATAATAATAAT
1638511 ACT-ATAAT-AT
1 A-TAATAATAAT
1638521 AGTAATAATAATT
1 A-TAATAATAA-T
*
1638534 ATAACAA-AA-
1 ATAATAATAAT
1638543 ATAATAA-AAT
1 ATAATAATAAT
1638553 A
1 A
1638554 CGATCCAATT
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
9 8 0.18
10 5 0.11
11 23 0.51
12 7 0.16
13 2 0.04
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (11 bp):
ATAATAATAAT
Found at i:1638504 original size:14 final size:14
Alignment explanation
Indices: 1638487--1638530 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
1638477 TATAATACAC
1638487 TAATAATAATAATA
1 TAATAATAATAATA
* *
1638501 TAATAATGATACTA
1 TAATAATAATAATA
1638515 TAATATAGTAATAATA
1 TAATA-A-TAATAATA
1638531 ATTATAACAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
14 17 0.71
15 1 0.04
16 6 0.25
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (14 bp):
TAATAATAATAATA
Found at i:1638969 original size:16 final size:15
Alignment explanation
Indices: 1638946--1638976 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
1638936 CATTATCATT
1638946 TTTATTTATTATTTA
1 TTTATTTATTATTTA
1638961 TTTATTTTATTATTTA
1 TTTA-TTTATTATTTA
1638977 ATAATTTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTATTTATTATTTA
Found at i:1638983 original size:16 final size:16
Alignment explanation
Indices: 1638950--1638984 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
1638940 ATCATTTTTA
* *
1638950 TTTATTATTTATTTAT
1 TTTATTATTTAATAAT
1638966 TTTATTATTTAATAAT
1 TTTATTATTTAATAAT
1638982 TTT
1 TTT
1638985 TCAACATCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTATTATTTAATAAT
Found at i:1639250 original size:4 final size:4
Alignment explanation
Indices: 1639241--1639266 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
1639231 TATTTGCAAT
1639241 TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT
1639267 ATTATTATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:1640910 original size:3 final size:3
Alignment explanation
Indices: 1640904--1640940 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
1640894 ATAATAATAA
* *
1640904 TAT TAT TAT TAT TAT TAT TAC TGT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1640941 TTTTAAGTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:1640953 original size:21 final size:24
Alignment explanation
Indices: 1640905--1640953 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
1640895 TAATAATAAT
* *
1640905 ATTATTATTATTATTATTACTGTT
1 ATTATTATTATTATTATTACAGTG
1640929 ATTATTATTATT-TT-TTA-AGTG
1 ATTATTATTATTATTATTACAGTG
1640950 ATTA
1 ATTA
1640954 ATTTCAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 6 0.26
22 3 0.13
23 2 0.09
24 12 0.52
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61
Consensus pattern (24 bp):
ATTATTATTATTATTATTACAGTG
Found at i:1647335 original size:179 final size:178
Alignment explanation
Indices: 1646992--1647337 Score: 491
Period size: 178 Copynumber: 1.9 Consensus size: 178
1646982 ATTTGAACCG
* * * *
1646992 TAAGTGGCAGAAGCCAATAGCAATTGGGTTGAACAGCCACTAATTTCTATGCATTATTAGGCGCA
1 TAAGTGGCAGAAGCCAATAGCAATTGGGTTGAACAGCAACTAATTCCCATGCATTATTAGGCACA
* *
1647057 AAATATTAAATTTTTAATTTTATATTCTATCTTTGATAATTTTAAATATATATATAGAAGTTTGG
66 AAATATTAAATTTTTAATTTTATATTCAATCTTTGATAATTTTAAATATATATATAGAAATTTGG
1647122 TTGAGCAATTGACATTCTAAAACATGGAAAATTCATACAATCTATCAA
131 TTGAGCAATTGACATTCTAAAACATGGAAAATTCATACAATCTATCAA
* * * *
1647170 TAAGTGGCCGAAGCCAATAGC-ATATGGGTTGAACAGCAACTCATTCCCATGCATTA-TAGTCAT
1 TAAGTGGCAGAAGCCAATAGCAAT-TGGGTTGAACAGCAACTAATTCCCATGCATTATTAGGCAC
* ** * *
1647233 AAAATGTTGGATTTTTTATTTTATATTCAATCTTTTATAATTTTAAATATGTATATATA-AAATT
65 AAAATATTAAATTTTTAATTTTATATTCAATCTTTGATAATTTTAAATA--TATATATAGAAATT
*
1647297 GTGGTTGAGCAATTGACATTCTAAAACATGGTAAATTCATA
128 -TGGTTGAGCAATTGACATTCTAAAACATGGAAAATTCATA
1647338 AAACCTACCA
Statistics
Matches: 148, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
177 49 0.33
178 52 0.35
179 47 0.32
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.37
Consensus pattern (178 bp):
TAAGTGGCAGAAGCCAATAGCAATTGGGTTGAACAGCAACTAATTCCCATGCATTATTAGGCACA
AAATATTAAATTTTTAATTTTATATTCAATCTTTGATAATTTTAAATATATATATAGAAATTTGG
TTGAGCAATTGACATTCTAAAACATGGAAAATTCATACAATCTATCAA
Found at i:1648304 original size:23 final size:21
Alignment explanation
Indices: 1648256--1648299 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
1648246 TAAATTTTAT
*
1648256 AATTTTTAATATAAAAAAATA
1 AATTTATAATATAAAAAAATA
1648277 AATTTATAATATAAAAAAATA
1 AATTTATAATATAAAAAAATA
1648298 AA
1 AA
1648300 AATTTTAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (21 bp):
AATTTATAATATAAAAAAATA
Found at i:1654472 original size:10 final size:10
Alignment explanation
Indices: 1654446--1654479 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
1654436 CGTTCGTGAA
1654446 TATATTTGATT
1 TATATTT-ATT
*
1654457 TTTATTTATT
1 TATATTTATT
1654467 TATATTTATT
1 TATATTTATT
1654477 TAT
1 TAT
1654480 TAAATTTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 15 0.71
11 6 0.29
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (10 bp):
TATATTTATT
Found at i:1654686 original size:11 final size:10
Alignment explanation
Indices: 1654670--1654730 Score: 52
Period size: 10 Copynumber: 5.8 Consensus size: 10
1654660 TATTTTTATT
1654670 ATTTATTTTA
1 ATTTATTTTA
1654680 ATCTTATTTTA
1 AT-TTATTTTA
*
1654691 ATGTTCATTTTT
1 AT-TT-ATTTTA
**
1654703 ATTTATTTGG
1 ATTTATTTTA
1654713 ATTTA-TTTA
1 ATTTATTTTA
1654722 TATTTATTT
1 -ATTTATTT
1654731 AAGTTTGTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
9 2 0.05
10 16 0.39
11 16 0.39
12 7 0.17
ACGTcount: A:0.25, C:0.03, G:0.05, T:0.67
Consensus pattern (10 bp):
ATTTATTTTA
Found at i:1654821 original size:12 final size:12
Alignment explanation
Indices: 1654806--1654839 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
1654796 ATTTATTTAT
1654806 ATATGTTCGTAA
1 ATATGTTCGTAA
*
1654818 ATATGTTTGTAA
1 ATATGTTCGTAA
*
1654830 ATATATTCGT
1 ATATGTTCGT
1654840 TTAATGTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.32, C:0.06, G:0.15, T:0.47
Consensus pattern (12 bp):
ATATGTTCGTAA
Found at i:1656077 original size:16 final size:16
Alignment explanation
Indices: 1656058--1656113 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 16
1656048 ATTATTTATA
*
1656058 TATATATTTATATAAT
1 TATATATTTAAATAAT
*
1656074 TATATTTTTAAAT-AT
1 TATATATTTAAATAAT
*
1656089 T-TATATTTAAAAAAT
1 TATATATTTAAATAAT
* *
1656104 AATATTTTTA
1 TATATATTTA
1656114 TTAATTTCGA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
14 9 0.28
15 5 0.16
16 18 0.56
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TATATATTTAAATAAT
Found at i:1656096 original size:30 final size:30
Alignment explanation
Indices: 1656055--1656113 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
1656045 TTAATTATTT
* * *
1656055 ATATATATATTTATATAATTATATTTTTAA
1 ATATATATATTTAAAAAATAATATTTTTAA
*
1656085 ATATTTATATTTAAAAAATAATATTTTTA
1 ATATATATATTTAAAAAATAATATTTTTA
1656114 TTAATTTCGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (30 bp):
ATATATATATTTAAAAAATAATATTTTTAA
Found at i:1657246 original size:108 final size:106
Alignment explanation
Indices: 1657057--1657268 Score: 370
Period size: 108 Copynumber: 2.0 Consensus size: 106
1657047 TGATGGAAAC
**
1657057 CAGTTTCTTTGAACTAAGAATGCCCAACACCAGTCTATGCCTTTATAGGATCAAGGGGGAGAATC
1 CAGTTTCTTTGAACTAAGAATGCCCAACACCAGTCTATGCCTCCATAGGATCAAGGGGGAGAATC
1657122 AGAGCGTACACGTGGTCTCTACCCATTTGCAAATTGAGATGAA
66 AGAGCGTACACGTGG--TCTACCCATTTGCAAATTGAGATGAA
* *
1657165 CAGTTTCTTTGAACTAAGAATGCCCAACATCAGTCTATGCCTCCATAGTATCAAGGGGGAGAATC
1 CAGTTTCTTTGAACTAAGAATGCCCAACACCAGTCTATGCCTCCATAGGATCAAGGGGGAGAATC
1657230 AGAGCGTACACGTGGTCTACCCATTTGCAAATTGAGATG
66 AGAGCGTACACGTGGTCTACCCATTTGCAAATTGAGATG
1657269 CTGAAGGGAA
Statistics
Matches: 100, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
106 24 0.24
108 76 0.76
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (106 bp):
CAGTTTCTTTGAACTAAGAATGCCCAACACCAGTCTATGCCTCCATAGGATCAAGGGGGAGAATC
AGAGCGTACACGTGGTCTACCCATTTGCAAATTGAGATGAA
Done.