Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15507587
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 91 of 91
Found at i:15454628 original size:54 final size:54
Alignment explanation
Indices: 15454521--15454633 Score: 172
Period size: 54 Copynumber: 2.1 Consensus size: 54
15454511 ACTTTAGAGA
* **
15454521 TTCATGCACTTTCAAGAATTAAAAGGCACAATGACTATATTTAGTTCGTAGTGC
1 TTCATGCACTTTCAAGAACTAAAAGGCACAATGACTATATTTAGTTCACAGTGC
* * *
15454575 TTCATGCACTTTCAAGAGCTAAAAGGCATAATGACTATATTTAGTTTACAGTGC
1 TTCATGCACTTTCAAGAACTAAAAGGCACAATGACTATATTTAGTTCACAGTGC
15454629 TTCAT
1 TTCAT
15454634 TCTTGCACTT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.35
Consensus pattern (54 bp):
TTCATGCACTTTCAAGAACTAAAAGGCACAATGACTATATTTAGTTCACAGTGC
Found at i:15456138 original size:20 final size:20
Alignment explanation
Indices: 15456113--15456151 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
15456103 TTGATTGCTT
*
15456113 TTAAAAATTGAATTTTTATC
1 TTAAAAATTAAATTTTTATC
*
15456133 TTAAAATTTAAATTTTTAT
1 TTAAAAATTAAATTTTTAT
15456152 AATCATAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (20 bp):
TTAAAAATTAAATTTTTATC
Found at i:15457976 original size:45 final size:45
Alignment explanation
Indices: 15457876--15458008 Score: 171
Period size: 45 Copynumber: 2.9 Consensus size: 45
15457866 TACCATTTTC
* * *
15457876 ATACTATCATTTTCTTAATTTATTTTGCGAAAAATTCATTACATTAG
1 ATAC-ATCATTTTCTTAATTTA-TTTGCGAAAAATGCATGACATGAG
* *
15457923 ACT-TATCATTTTCTTAATTTATTTGCAAAAAATGCATGACATGAG
1 A-TACATCATTTTCTTAATTTATTTGCGAAAAATGCATGACATGAG
*
15457968 ATACATCATTTTCTT-ATTAATTTGCGAAAAATGCATGACAT
1 ATACATCATTTTCTTAATTTATTTGCGAAAAATGCATGACAT
15458009 AAGACTTGTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
44 25 0.33
45 32 0.42
46 17 0.22
47 1 0.01
48 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.09, T:0.42
Consensus pattern (45 bp):
ATACATCATTTTCTTAATTTATTTGCGAAAAATGCATGACATGAG
Found at i:15458752 original size:44 final size:45
Alignment explanation
Indices: 15458683--15458776 Score: 113
Period size: 44 Copynumber: 2.1 Consensus size: 45
15458673 TACCATTTTC
* * *
15458683 ATAC-TATAATTTTCTTAATTTATTTGCGAAAAATGCATT-ACATG
1 ATACTTATAATTTTCTTAATTAATTTGCAAAAAAAGC-TTGACATG
*
15458727 ATACTTATCATTTTCTT-ATTAATTTGCAAAAAAAGCTTGACATG
1 ATACTTATAATTTTCTTAATTAATTTGCAAAAAAAGCTTGACATG
*
15458771 AGACTT
1 ATACTT
15458777 GTTCATGTGA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
43 2 0.05
44 30 0.70
45 11 0.26
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.41
Consensus pattern (45 bp):
ATACTTATAATTTTCTTAATTAATTTGCAAAAAAAGCTTGACATG
Found at i:15458975 original size:46 final size:44
Alignment explanation
Indices: 15458907--15459039 Score: 176
Period size: 46 Copynumber: 3.0 Consensus size: 44
15458897 ATTTTCATAC
* * *
15458907 TATCATTTTCTTAACTTATTTGCGAAAAATGCATTACATTAGACT
1 TATCATTTTCTT-ATTTATTTGCGAAAAATGCATGACATGAGACT
15458952 TAATCATTTTCTTAGTTTATTTGCGAAAAATGCATGACATGAGACT
1 T-ATCATTTTCTTA-TTTATTTGCGAAAAATGCATGACATGAGACT
* * * *
15458998 TATCATTTTCTTATTGATTTGCAAAAAAAGCTTGACATGAGA
1 TATCATTTTCTTATTTATTTGCGAAAAATGCATGACATGAGA
15459040 GTTGTTCATG
Statistics
Matches: 79, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
44 25 0.32
45 14 0.18
46 40 0.51
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.40
Consensus pattern (44 bp):
TATCATTTTCTTATTTATTTGCGAAAAATGCATGACATGAGACT
Found at i:15459202 original size:266 final size:266
Alignment explanation
Indices: 15458691--15459856 Score: 2014
Period size: 266 Copynumber: 4.4 Consensus size: 266
15458681 TCATACTATA
* *
15458691 ATTTTCTTAATTTATTTGCGAAAAATGCATTACATGATACTTATCATTTTCTTATTAATTTGCAA
1 ATTTTCTTAATTTATTTGCGAAAAATGCATTACATGAGACTTATCATTTTCTTATTAATTTGCGA
*
15458756 AAAAAGCTTGACATGAGACTTGTTCATGTGAAAAGGGAAAGTAAGCCTACCACAGATGAATTAAT
66 AAAAAGCTTGACATGAGACTTGTTCATGTGAAAAGGGGAAGTAAGCCTACCACAGATGAATTAAT
15458821 GTGACCCAAACAGAGAAAAGCTACCACTAAAGGAAGGAGTTTACGAAATTTCCATTACTCCATGT
131 GTGACCCAAACAGAGAAAAGCTACCACTAAAGGAAGGAGTTTACGAAATTTCCATTACTCCATGT
15458886 TTGCAAATACCATTTTCATACTATCATTTTCTTAACTTATTTGCGAAAAATGCATTACATTAGAC
196 TTGCAAATACCATTTTCATACTATCATTTTCTTAACTTATTTGCGAAAAATGCATTACATTAGAC
15458951 TTAATC
261 TTAATC
* * * *
15458957 ATTTTCTTAGTTTATTTGCGAAAAATGCATGACATGAGACTTATCATTTTCTTATTGATTTGCAA
1 ATTTTCTTAATTTATTTGCGAAAAATGCATTACATGAGACTTATCATTTTCTTATTAATTTGCGA
*
15459022 AAAAAGCTTGACATGAGAGTTGTTCATGTGAAAAGGGGAAGTAAGCCTACCACAGATGAATTAAT
66 AAAAAGCTTGACATGAGACTTGTTCATGTGAAAAGGGGAAGTAAGCCTACCACAGATGAATTAAT
* * * *
15459087 GTGACCCAAACAGAGAAAAGCTGCCAGTAAAAGGAAGGAGTTTACAAAATTTCCATTATTCCATG
131 GTGACCCAAACAGAGAAAAGCTACCACT-AAAGGAAGGAGTTTACGAAATTTCCATTACTCCATG
* *
15459152 TTTGCAAATACCATTTTCATACTATCATTTTCTTAATTTA-TTGGGAAAAATGCATTACATTAGA
195 TTTGCAAATACCATTTTCATACTATCATTTTCTTAACTTATTTGCGAAAAATGCATTACATTAGA
15459216 CTTAATC
260 CTTAATC
* * *
15459223 ATTTTCTTTATTTATTTTCGAAAAATGCATTACATGAGACTTATCATTTTCTTATTAATTTGTGA
1 ATTTTCTTAATTTATTTGCGAAAAATGCATTACATGAGACTTATCATTTTCTTATTAATTTGCGA
*
15459288 AAAAAGCTTGACATGAGACTTGTTCATGTGAAAAGGGGAAGTCAGCCTACCACAGATGAATTAAT
66 AAAAAGCTTGACATGAGACTTGTTCATGTGAAAAGGGGAAGTAAGCCTACCACAGATGAATTAAT
* * * *
15459353 GTGAACCAGACAGAGAAAAGCTACCACTAAAGGAAGGATTTTACGAAATTTCCATTACCCCATGT
131 GTGACCCAAACAGAGAAAAGCTACCACTAAAGGAAGGAGTTTACGAAATTTCCATTACTCCATGT
*
15459418 TTGCAAATACCATTTTCATACTATCATTTTCTTAATTTATTTGCGAAAAATGCATTACATTAGAC
196 TTGCAAATACCATTTTCATACTATCATTTTCTTAACTTATTTGCGAAAAATGCATTACATTAGAC
15459483 TTAATC
261 TTAATC
15459489 ATTTTCTTAATTTATTTGCGAAAAATGCATTACATGAGACTTATCATTTTCTTATTAATTTGCGA
1 ATTTTCTTAATTTATTTGCGAAAAATGCATTACATGAGACTTATCATTTTCTTATTAATTTGCGA
*
15459554 AAAAAGCTTGACATGAGACTTGTTCATGTGAAAAGGGGAAGTCAGCCTACCACAGATGAATTAAT
66 AAAAAGCTTGACATGAGACTTGTTCATGTGAAAAGGGGAAGTAAGCCTACCACAGATGAATTAAT
* *
15459619 GTGACCCAAACAGAGAAAAGCTACCACTAAAGGAAGGATTTTACGAAATTTCCATTATTCCATGT
131 GTGACCCAAACAGAGAAAAGCTACCACTAAAGGAAGGAGTTTACGAAATTTCCATTACTCCATGT
15459684 TTGCAAATACCATTTTCATACTATCATTTTCTTAACTTATTTGCGAAAAATGCATTACATTAGAC
196 TTGCAAATACCATTTTCATACTATCATTTTCTTAACTTATTTGCGAAAAATGCATTACATTAGAC
15459749 TT-ATC
261 TTAATC
* * * *
15459754 ATTTTCTTAGTTTATTTGCAAAAAATACATGACATGAGA-TATATCATTTTCTTATTAATTTGCG
1 ATTTTCTTAATTTATTTGCGAAAAATGCATTACATGAGACT-TATCATTTTCTTATTAATTTGCG
*
15459818 AAAAAAGCATGACATGAGACTTGTTCATGTGAAAAGGGG
65 AAAAAAGCTTGACATGAGACTTGTTCATGTGAAAAGGGG
15459857 TTGAATGACT
Statistics
Matches: 854, Mismatches: 43, Indels: 7
0.94 0.05 0.01
Matches are distributed among these distances:
264 1 0.00
265 171 0.20
266 609 0.71
267 73 0.09
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.34
Consensus pattern (266 bp):
ATTTTCTTAATTTATTTGCGAAAAATGCATTACATGAGACTTATCATTTTCTTATTAATTTGCGA
AAAAAGCTTGACATGAGACTTGTTCATGTGAAAAGGGGAAGTAAGCCTACCACAGATGAATTAAT
GTGACCCAAACAGAGAAAAGCTACCACTAAAGGAAGGAGTTTACGAAATTTCCATTACTCCATGT
TTGCAAATACCATTTTCATACTATCATTTTCTTAACTTATTTGCGAAAAATGCATTACATTAGAC
TTAATC
Found at i:15459226 original size:45 final size:45
Alignment explanation
Indices: 15459174--15459308 Score: 168
Period size: 44 Copynumber: 3.0 Consensus size: 45
15459164 ATTTTCATAC
* *
15459174 TATCATTTTCTTAATTTA-TTGGGAAAAATGCATTACATTAGACT
1 TATCATTTTCTTAATTTATTTGCGAAAAATGCATTACATGAGACT
* *
15459218 TAATCATTTTCTTTATTTATTTTCGAAAAATGCATTACATGAGACT
1 T-ATCATTTTCTTAATTTATTTGCGAAAAATGCATTACATGAGACT
* * *
15459264 TATCATTTTCTT-ATTAATTTGTGAAAAAAGC-TTGACATGAGACT
1 TATCATTTTCTTAATTTATTTGCGAAAAATGCATT-ACATGAGACT
15459308 T
1 T
15459309 GTTCATGTGA
Statistics
Matches: 80, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
43 2 0.03
44 27 0.34
45 27 0.34
46 24 0.30
ACGTcount: A:0.33, C:0.12, G:0.11, T:0.44
Consensus pattern (45 bp):
TATCATTTTCTTAATTTATTTGCGAAAAATGCATTACATGAGACT
Found at i:15459568 original size:44 final size:45
Alignment explanation
Indices: 15459439--15459574 Score: 213
Period size: 46 Copynumber: 3.0 Consensus size: 45
15459429 ATTTTCATAC
*
15459439 TATCATTTTCTTAATTTATTTGCGAAAAATGCATTACATTAGACT
1 TATCATTTTCTTAATTTATTTGCGAAAAATGCATTACATGAGACT
15459484 TAATCATTTTCTTAATTTATTTGCGAAAAATGCATTACATGAGACT
1 T-ATCATTTTCTTAATTTATTTGCGAAAAATGCATTACATGAGACT
* *
15459530 TATCATTTTCTT-ATTAATTTGCGAAAAAAGC-TTGACATGAGACT
1 TATCATTTTCTTAATTTATTTGCGAAAAATGCATT-ACATGAGACT
15459574 T
1 T
15459575 GTTCATGTGA
Statistics
Matches: 86, Mismatches: 3, Indels: 5
0.91 0.03 0.05
Matches are distributed among these distances:
43 2 0.02
44 28 0.33
45 12 0.14
46 44 0.51
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.42
Consensus pattern (45 bp):
TATCATTTTCTTAATTTATTTGCGAAAAATGCATTACATGAGACT
Found at i:15459756 original size:45 final size:44
Alignment explanation
Indices: 15459705--15459839 Score: 166
Period size: 45 Copynumber: 3.0 Consensus size: 44
15459695 ATTTTCATAC
* *
15459705 TATCATTTTCTTAACTTATTTGCGAAAAATGCATTACATTAGACT
1 TATCATTTTCTTAA-TTATTTGCGAAAAATGCATGACATGAGACT
* * *
15459750 TATCATTTTCTTAGTTTATTTGCAAAAAATACATGACATGAGA-T
1 TATCATTTTCTTA-ATTATTTGCGAAAAATGCATGACATGAGACT
*
15459794 ATATCATTTTCTT-ATTAATTTGCGAAAAAAGCATGACATGAGACT
1 -TATCATTTTCTTAATT-ATTTGCGAAAAATGCATGACATGAGACT
15459839 T
1 T
15459840 GTTCATGTGA
Statistics
Matches: 77, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
43 2 0.03
44 25 0.32
45 50 0.65
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (44 bp):
TATCATTTTCTTAATTATTTGCGAAAAATGCATGACATGAGACT
Found at i:15460592 original size:44 final size:45
Alignment explanation
Indices: 15460519--15460610 Score: 159
Period size: 44 Copynumber: 2.1 Consensus size: 45
15460509 ATTTTCATAC
* *
15460519 TATCATTTTCTTAATTTATTTGCGAAAAATGCATTACATGAGACT
1 TATCATTTTCTTAATTAATTTGCGAAAAATGCATGACATGAGACT
15460564 TATCATTTTCTT-ATTAATTTGCGAAAAATGCATGACATGAGACT
1 TATCATTTTCTTAATTAATTTGCGAAAAATGCATGACATGAGACT
15460608 TAT
1 TAT
15460611 TCATGTGAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
44 33 0.73
45 12 0.27
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.41
Consensus pattern (45 bp):
TATCATTTTCTTAATTAATTTGCGAAAAATGCATGACATGAGACT
Found at i:15461553 original size:34 final size:34
Alignment explanation
Indices: 15461468--15461556 Score: 99
Period size: 34 Copynumber: 2.6 Consensus size: 34
15461458 TTCGGTTATG
* *
15461468 CATTTCTAAAAGCTTTTAAAAGTTTTTGGATTTA
1 CATTTCCAAAAGCTTTTAAAAGGTTTTGGATTTA
** *
15461502 CATTTAGAGAAA-CTTTTAAAAGGTTTTGGATTTT
1 CATTTCCA-AAAGCTTTTAAAAGGTTTTGGATTTA
* *
15461536 TATTTCCAAAAGTTTTTAAAA
1 CATTTCCAAAAGCTTTTAAAA
15461557 TATTCCAAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
33 3 0.07
34 39 0.87
35 3 0.07
ACGTcount: A:0.35, C:0.08, G:0.12, T:0.45
Consensus pattern (34 bp):
CATTTCCAAAAGCTTTTAAAAGGTTTTGGATTTA
Found at i:15463922 original size:20 final size:21
Alignment explanation
Indices: 15463894--15463933 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
15463884 AATTGATTGG
15463894 ATTTAAAAA-ATAATTTTTTT
1 ATTTAAAAATATAATTTTTTT
*
15463914 ATTTTAAAATATAATTTTTT
1 ATTTAAAAATATAATTTTTT
15463934 ATAATAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTTAAAAATATAATTTTTTT
Found at i:15463941 original size:20 final size:21
Alignment explanation
Indices: 15463897--15463944 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
15463887 TGATTGGATT
**
15463897 TAAAAAATAATTTTTTTATTT
1 TAAAAAATAATTTTTTTATAA
*
15463918 TAAAATATAA-TTTTTTATAA
1 TAAAAAATAATTTTTTTATAA
15463938 TAAAAAA
1 TAAAAAA
15463945 ACATAATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
20 14 0.61
21 9 0.39
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
TAAAAAATAATTTTTTTATAA
Found at i:15465553 original size:17 final size:18
Alignment explanation
Indices: 15465533--15465567 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
15465523 TTTTATAAAT
15465533 AAAAAG-ATTTTGGGTGC
1 AAAAAGAATTTTGGGTGC
15465550 AAAAAGAAATTTTGGGTG
1 AAAAAG-AATTTTGGGTG
15465568 GGTTTATCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
19 10 0.62
ACGTcount: A:0.40, C:0.03, G:0.29, T:0.29
Consensus pattern (18 bp):
AAAAAGAATTTTGGGTGC
Found at i:15465628 original size:17 final size:17
Alignment explanation
Indices: 15465603--15465638 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
15465593 CTTTGTTGTA
15465603 ATATATATATATATAAT
1 ATATATATATATATAAT
* *
15465620 ATATTTATATATATGAT
1 ATATATATATATATAAT
15465637 AT
1 AT
15465639 GCAAATTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (17 bp):
ATATATATATATATAAT
Found at i:15465638 original size:15 final size:15
Alignment explanation
Indices: 15465601--15465632 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
15465591 AACTTTGTTG
15465601 TAATATATATATATA
1 TAATATATATATATA
*
15465616 TAATATATTTATATA
1 TAATATATATATATA
15465631 TA
1 TA
15465633 TGATATGCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATATATATATATA
Found at i:15466614 original size:72 final size:73
Alignment explanation
Indices: 15466486--15466632 Score: 190
Period size: 72 Copynumber: 2.0 Consensus size: 73
15466476 ATATAATCAA
* * ** *
15466486 ATCAATGTCAATAATTAAATTCCACATAGGTGGATGAATTGATGATGCCGTGAACAA-AAGCTTT
1 ATCAATGTCAATAATTAAATTCCACACAGGTAGATGAATTGATGATGCAATAAACAAGAA-CTTT
15466550 G-GTGCGAC
65 GAGTGCGAC
* * *
15466558 ATCAATGTCAATAATTAAATTCCCCACAGTTAGCTGAATTGATGATGCAATAAACAAGAACTTTG
1 ATCAATGTCAATAATTAAATTCCACACAGGTAGATGAATTGATGATGCAATAAACAAGAACTTTG
*
15466623 ATTGCGAC
66 AGTGCGAC
15466631 AT
1 AT
15466633 TAGAATGACG
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
72 54 0.84
73 10 0.16
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (73 bp):
ATCAATGTCAATAATTAAATTCCACACAGGTAGATGAATTGATGATGCAATAAACAAGAACTTTG
AGTGCGAC
Found at i:15469402 original size:2 final size:2
Alignment explanation
Indices: 15469395--15469420 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
15469385 AAGATCTGCA
15469395 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
15469421 TATTTTTACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15472924 original size:8 final size:8
Alignment explanation
Indices: 15472913--15472949 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
15472903 TTTTTATTTA
15472913 TATATATT
1 TATATATT
*
15472921 TATATAAT
1 TATATATT
15472929 TATATATT
1 TATATATT
*
15472937 TAAATATT
1 TATATATT
15472945 TATAT
1 TATAT
15472950 TTAAAAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (8 bp):
TATATATT
Found at i:15472953 original size:14 final size:16
Alignment explanation
Indices: 15472913--15472967 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 16
15472903 TTTTTATTTA
*
15472913 TATATATTTATATAAT
1 TATATATTTAAATAAT
15472929 TATATATTTAAAT-AT
1 TATATATTTAAATAAT
*
15472944 T-TATATTTAAAAAAT
1 TATATATTTAAATAAT
*
15472959 AATAT-TTTA
1 TATATATTTA
15472968 TATTTTAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
14 10 0.29
15 9 0.26
16 15 0.44
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TATATATTTAAATAAT
Found at i:15472969 original size:21 final size:23
Alignment explanation
Indices: 15472939--15472991 Score: 85
Period size: 23 Copynumber: 2.4 Consensus size: 23
15472929 TATATATTTA
15472939 AATA-TTTATA-TTT-AAAAAAT
1 AATATTTTATATTTTAAAAAAAT
15472959 AATATTTTATATTTTAAAAAAAT
1 AATATTTTATATTTTAAAAAAAT
15472982 AATATTTTAT
1 AATATTTTAT
15472992 TAATTTCTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
20 4 0.13
21 6 0.20
22 3 0.10
23 17 0.57
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
AATATTTTATATTTTAAAAAAAT
Found at i:15473641 original size:29 final size:30
Alignment explanation
Indices: 15473608--15473668 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 30
15473598 AATTTATAAT
*
15473608 TTAAAAATCATATTAAAAATTTT-TTACAA
1 TTAAAAATCACATTAAAAATTTTATTACAA
** * *
15473637 TTAAATCTCACATTAAATATTTTATTATAA
1 TTAAAAATCACATTAAAAATTTTATTACAA
15473667 TT
1 TT
15473669 TAAATATTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 19 0.73
30 7 0.27
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (30 bp):
TTAAAAATCACATTAAAAATTTTATTACAA
Found at i:15474071 original size:12 final size:12
Alignment explanation
Indices: 15474054--15474081 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
15474044 TATCAATTTG
15474054 AATTTTTTATTA
1 AATTTTTTATTA
15474066 AATTTTTTATTA
1 AATTTTTTATTA
15474078 AATT
1 AATT
15474082 ATTCTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
AATTTTTTATTA
Found at i:15474340 original size:27 final size:27
Alignment explanation
Indices: 15474266--15474344 Score: 80
Period size: 27 Copynumber: 3.1 Consensus size: 27
15474256 TTATTTAATA
*
15474266 TATTATTA-TTATCT-A--TTAATATT
1 TATTATTATTTATCTGATTTTATTATT
*
15474289 T-TTATTATTTATCTGCTTTTATTATT
1 TATTATTATTTATCTGATTTTATTATT
*
15474315 TATTATTATTTATCT-ATTTCTTTTATT
1 TATTATTATTTATCTGATTT-TATTATT
15474342 TAT
1 TAT
15474345 CTAATTAATT
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
22 6 0.13
23 7 0.15
26 11 0.24
27 22 0.48
ACGTcount: A:0.25, C:0.06, G:0.01, T:0.67
Consensus pattern (27 bp):
TATTATTATTTATCTGATTTTATTATT
Found at i:15474345 original size:17 final size:18
Alignment explanation
Indices: 15474266--15474389 Score: 77
Period size: 17 Copynumber: 7.2 Consensus size: 18
15474256 TTATTTAATA
15474266 TATTATTA-TTATCTA-T
1 TATTATTATTTATCTATT
*
15474282 TAATATT-TTTAT-TATT
1 TATTATTATTTATCTATT
**
15474298 TATCTGCT-TTTAT-TATT
1 TAT-TATTATTTATCTATT
15474315 TATTATTATTTATCTATT
1 TATTATTATTTATCTATT
*
15474333 TCTT-TTATTTATCTAATT
1 TATTATTATTTATCT-ATT
* * *
15474351 AATTTTTTTGTTATCTA-T
1 TATTATTAT-TTATCTATT
* *
15474369 TAATA-TATTTATCTTTT
1 TATTATTATTTATCTATT
15474386 TATT
1 TATT
15474390 TTGATTAATT
Statistics
Matches: 83, Mismatches: 16, Indels: 17
0.72 0.14 0.15
Matches are distributed among these distances:
15 2 0.02
16 21 0.25
17 35 0.42
18 15 0.18
19 4 0.05
20 6 0.07
ACGTcount: A:0.26, C:0.06, G:0.02, T:0.66
Consensus pattern (18 bp):
TATTATTATTTATCTATT
Found at i:15474770 original size:31 final size:32
Alignment explanation
Indices: 15474710--15474775 Score: 82
Period size: 31 Copynumber: 2.1 Consensus size: 32
15474700 AATTTTCATA
* *
15474710 TTTTGGTTGAATTTTTCGACGAATGTTGAATT
1 TTTTGGTTGAATTTTTCGACCAATGTTGAACT
*
15474742 TTTTGG-TGACTTTTTCGACCAA-GTTTGAACT
1 TTTTGGTTGAATTTTTCGACCAATG-TTGAACT
15474773 TTT
1 TTT
15474776 CGGCTAGCTG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
30 1 0.03
31 23 0.77
32 6 0.20
ACGTcount: A:0.20, C:0.11, G:0.20, T:0.50
Consensus pattern (32 bp):
TTTTGGTTGAATTTTTCGACCAATGTTGAACT
Found at i:15475308 original size:6 final size:6
Alignment explanation
Indices: 15475299--15475356 Score: 59
Period size: 6 Copynumber: 9.7 Consensus size: 6
15475289 ATTTAATATT
*
15475299 TTTTTA -TTTTA TTTTTA TTCTTT- TTCTTTA TTTTTTA TTTTCA TTTTTA
1 TTTTTA TTTTTA TTTTTA TT-TTTA TT-TTTA -TTTTTA TTTTTA TTTTTA
15475348 -TTTTA TTTT
1 TTTTTA TTTT
15475357 CTTTAGATAA
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
5 10 0.22
6 26 0.58
7 7 0.16
8 2 0.04
ACGTcount: A:0.14, C:0.05, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:15475331 original size:32 final size:33
Alignment explanation
Indices: 15475298--15475361 Score: 105
Period size: 31 Copynumber: 2.0 Consensus size: 33
15475288 TATTTAATAT
15475298 TTTTTTATTTT-ATTTTTATTCT-TTTTCTTTA
1 TTTTTTATTTTCATTTTTATTCTATTTTCTTTA
*
15475329 TTTTTTATTTTCATTTTTATTTTATTTTCTTTA
1 TTTTTTATTTTCATTTTTATTCTATTTTCTTTA
15475362 GATAAAATTC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 11 0.37
32 10 0.33
33 9 0.30
ACGTcount: A:0.14, C:0.06, G:0.00, T:0.80
Consensus pattern (33 bp):
TTTTTTATTTTCATTTTTATTCTATTTTCTTTA
Found at i:15475449 original size:59 final size:57
Alignment explanation
Indices: 15475374--15475649 Score: 299
Period size: 58 Copynumber: 4.7 Consensus size: 57
15475364 TAAAATTCAA
*
15475374 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTTTTTGAAAATAAGCTTTC
1 AAAAAAATA-TTTTGAGGAAAAGTTGAAAGTATCAA-TTTTTCTTGAAAATAAGCTTTC
*
15475433 TAAAAAAATATTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTCC
1 -AAAAAAATATTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTT-C
* * * * *
15475492 AAAAAAATATTTTCAGGGAAAAGTTGAAAGTATCAATTGTCCTTAAAAATAAGTTTTC
1 AAAAAAATATTTTGA-GGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTC
* * * * * *
15475550 AAAAATGGAT-TTTTGAGAAAAAATTGAGAGTGTCAATTTTTC-TCAAAATTAAAG-TTTC
1 AAAAA--AATATTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAA-T-AAGCTTTC
*
15475608 AAAAAAAAAATTTTG-GGCAAAAGTTGAAAGTATCAATTTTTC
1 -AAAAAAATATTTTGAGG-AAAAGTTGAAAGTATCAATTTTTC
15475650 CTGCACAAAA
Statistics
Matches: 184, Mismatches: 23, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
57 7 0.04
58 91 0.49
59 75 0.41
60 11 0.06
ACGTcount: A:0.44, C:0.07, G:0.14, T:0.35
Consensus pattern (57 bp):
AAAAAAATATTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTC
Found at i:15475588 original size:117 final size:115
Alignment explanation
Indices: 15475373--15475645 Score: 320
Period size: 117 Copynumber: 2.3 Consensus size: 115
15475363 ATAAAATTCA
* ** *
15475373 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTTTTTGAAAATAAGCTTTCTAAAA
1 AAAAAAAATA-TTTTG-GGAAAAGTTGAAAGTATCAA-TTGTCCTTAAAAATAAGCTTTCTAAAA
* *
15475438 AAATATTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAA-T-AAGCTTTC
63 AAATATTTTGAGAAAAAATTGAAAGTATCAATTTTTC-TCAAAATTAAAG-TTTC
* *
15475491 CAAAAAAATATTTTCAGGGAAAAGTTGAAAGTATCAATTGTCCTTAAAAATAAGTTTTC-AAAAA
1 AAAAAAAATATTTT--GGGAAAAGTTGAAAGTATCAATTGTCCTTAAAAATAAGCTTTCTAAAAA
* * *
15475555 TGGAT-TTTTGAGAAAAAATTGAGAGTGTCAATTTTTCTCAAAATTAAAGTTTC
64 --AATATTTTGAGAAAAAATTGAAAGTATCAATTTTTCTCAAAATTAAAGTTTC
*
15475608 AAAAAAAAAATTTTGGGCAAAAGTTGAAAGTATCAATT
1 AAAAAAAATATTTTGGG-AAAAGTTGAAAGTATCAATT
15475646 TTTCCTGCAC
Statistics
Matches: 135, Mismatches: 13, Indels: 16
0.82 0.08 0.10
Matches are distributed among these distances:
115 3 0.02
116 30 0.22
117 67 0.50
118 34 0.25
119 1 0.01
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.34
Consensus pattern (115 bp):
AAAAAAAATATTTTGGGAAAAGTTGAAAGTATCAATTGTCCTTAAAAATAAGCTTTCTAAAAAAA
TATTTTGAGAAAAAATTGAAAGTATCAATTTTTCTCAAAATTAAAGTTTC
Found at i:15479591 original size:8 final size:8
Alignment explanation
Indices: 15479580--15479622 Score: 50
Period size: 9 Copynumber: 5.0 Consensus size: 8
15479570 GAAAAATGAG
15479580 AAAAAAGAA
1 AAAAAAG-A
15479589 AAAAATAGA
1 AAAAA-AGA
*
15479598 AAAAAATAA
1 AAAAAA-GA
15479607 AAAAAAGA
1 AAAAAAGA
15479615 AAAAAAGA
1 AAAAAAGA
15479623 TATTCAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
8 10 0.33
9 18 0.60
10 2 0.07
ACGTcount: A:0.86, C:0.00, G:0.09, T:0.05
Consensus pattern (8 bp):
AAAAAAGA
Found at i:15479598 original size:17 final size:17
Alignment explanation
Indices: 15479571--15479620 Score: 66
Period size: 17 Copynumber: 2.9 Consensus size: 17
15479561 ACAATGGATG
15479571 AAAAATGAGAAAAAAGA-A
1 AAAAAT-AGAAAAAA-ATA
15479589 AAAAATAGAAAAAAATA
1 AAAAATAGAAAAAAATA
*
15479606 AAAAAAAGAAAAAAA
1 AAAAATAGAAAAAAA
15479621 GATATTCAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 1 0.03
17 23 0.77
18 6 0.20
ACGTcount: A:0.84, C:0.00, G:0.10, T:0.06
Consensus pattern (17 bp):
AAAAATAGAAAAAAATA
Found at i:15479602 original size:9 final size:9
Alignment explanation
Indices: 15479571--15479619 Score: 50
Period size: 8 Copynumber: 5.6 Consensus size: 9
15479561 ACAATGGATG
15479571 AAAAATGAGA
1 AAAAAT-AGA
*
15479581 AAAAAGA-A
1 AAAAATAGA
15479589 AAAAATAGAA
1 AAAAATAG-A
15479599 AAAAATA-A
1 AAAAATAGA
15479607 AAAAA-AGA
1 AAAAATAGA
15479615 AAAAA
1 AAAAA
15479620 AGATATTCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
7 1 0.03
8 19 0.56
9 1 0.03
10 13 0.38
ACGTcount: A:0.84, C:0.00, G:0.10, T:0.06
Consensus pattern (9 bp):
AAAAATAGA
Found at i:15481640 original size:80 final size:81
Alignment explanation
Indices: 15481458--15481659 Score: 266
Period size: 80 Copynumber: 2.5 Consensus size: 81
15481448 CCATTTTATT
* * ** *
15481458 TTTTCAAAGTCGTGGTGCCTCTATTTAGATGAGCAATTTACTTTCCAAAGTTGTGGTGCCTCTGT
1 TTTTCAAAGTTGTGGTGCCTCTATTTAGATGAGCAATTTACTTTCCAAAG-TATGAAGCCTCTGA
15481523 TTAGAGGAGCAATTTAC
65 TTAGAGGAGCAATTTAC
15481540 TTTTCAAAGTTGTGGTGCCTCTATTTAGATGAGCAATTTACTTTCCAAAAG-AT-AAGCCTCTGA
1 TTTTCAAAGTTGTGGTGCCTCTATTTAGATGAGCAATTTACTTTCC-AAAGTATGAAGCCTCTGA
*
15481603 TTAGAGGAGCTATTTAC
65 TTAGAGGAGCAATTTAC
* * * *
15481620 TTTTCAAAGTTGTTGAGCCTCTGA-TTAGAAGAGCCATTTA
1 TTTTCAAAGTTGTGGTGCCTCT-ATTTAGATGAGCAATTTA
15481660 TTTTTTCAAA
Statistics
Matches: 108, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
80 57 0.53
81 2 0.02
82 45 0.42
83 4 0.04
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.37
Consensus pattern (81 bp):
TTTTCAAAGTTGTGGTGCCTCTATTTAGATGAGCAATTTACTTTCCAAAGTATGAAGCCTCTGAT
TAGAGGAGCAATTTAC
Found at i:15481679 original size:42 final size:41
Alignment explanation
Indices: 15481458--15481737 Score: 262
Period size: 41 Copynumber: 6.8 Consensus size: 41
15481448 CCATTTTATT
* * * *
15481458 TTTTCAAAGTCGTGGTGCCTCT-ATTTAGATGAGCAATTTAC
1 TTTTCAAAGTTGTTGAGCCTCTGA-TTAGAGGAGCAATTTAC
* * * *
15481499 TTTCCAAAGTTGTGGTGCCTCTGTTTAGAGGAGCAATTTAC
1 TTTTCAAAGTTGTTGAGCCTCTGATTAGAGGAGCAATTTAC
* * *
15481540 TTTTCAAAGTTGTGGTGCCTCT-ATTTAGATGAGCAATTTAC
1 TTTTCAAAGTTGTTGAGCCTCTGA-TTAGAGGAGCAATTTAC
* * * * *
15481581 TTTCCAAA--AGATAAGCCTCTGATTAGAGGAGCTATTTAC
1 TTTTCAAAGTTGTTGAGCCTCTGATTAGAGGAGCAATTTAC
* * *
15481620 TTTTCAAAGTTGTTGAGCCTCTGATTAGAAGAGCCATTTATT
1 TTTTCAAAGTTGTTGAGCCTCTGATTAGAGGAGCAATTTA-C
* * * ** *
15481662 TTTTCAAAGTCGTTGAGCCTCTAATTTGAGGAGCCGTTTAT
1 TTTTCAAAGTTGTTGAGCCTCTGATTAGAGGAGCAATTTAC
*
15481703 TTTTCAAAAGTCGTTGAGCCTCTGATTAGAGGAGC
1 TTTTC-AAAGTTGTTGAGCCTCTGATTAGAGGAGC
15481738 TTTGTTTATA
Statistics
Matches: 203, Mismatches: 29, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
39 29 0.14
40 1 0.00
41 111 0.55
42 62 0.31
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.37
Consensus pattern (41 bp):
TTTTCAAAGTTGTTGAGCCTCTGATTAGAGGAGCAATTTAC
Found at i:15481768 original size:45 final size:41
Alignment explanation
Indices: 15481452--15481783 Score: 206
Period size: 41 Copynumber: 8.0 Consensus size: 41
15481442 AAGGAGCCAT
* * * **
15481452 TTTATTTTTTCAAAGTCGTGGTGCCTCT-ATTTAGATGAGCAA
1 TTTA-TTTTTCAAAGTCGTTGAGCCTCTGA-TTAGAGGAGCTG
* * * * * * **
15481494 TTTACTTTCCAAAGTTGTGGTGCCTCTGTTTAGAGGAGCAA
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTG
* * * * * **
15481535 TTTACTTTTCAAAGTTGTGGTGCCTCT-ATTTAGATGAGCAA
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGA-TTAGAGGAGCTG
* * * * * *
15481576 TTTACTTTCCAAA--AGATAAGCCTCTGATTAGAGGAGCTA
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTG
* * * **
15481615 TTTACTTTTCAAAGTTGTTGAGCCTCTGATTAGAAGAGCCA
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTG
* * *
15481656 TTTATTTTTTCAAAGTCGTTGAGCCTCTAATTTGAGGAGCCG
1 TTTA-TTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTG
15481698 TTTATTTTTCAAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTG
1 TTTATTTTTC-AAAGTCGTTGAGCCTCTGATTAGAGGAGC--TG
* * *
15481742 TTTATATTTCTCAAAGTTGTTAAGCCTCT-ACTTAGAAGAGCT
1 TTTAT-TTT-TCAAAGTCGTTGAGCCTCTGA-TTAGAGGAGCT
15481784 TTGATCAAAA
Statistics
Matches: 244, Mismatches: 34, Indels: 23
0.81 0.11 0.08
Matches are distributed among these distances:
39 29 0.12
40 1 0.00
41 111 0.45
42 66 0.27
43 1 0.00
44 7 0.03
45 27 0.11
46 2 0.01
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (41 bp):
TTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTG
Found at i:15481786 original size:45 final size:41
Alignment explanation
Indices: 15481594--15481782 Score: 191
Period size: 42 Copynumber: 4.5 Consensus size: 41
15481584 CCAAAAGATA
* ** * *
15481594 AGCCTCTGATTAGAGGAGCTATTTACTTTTCAAAGTTGTTG
1 AGCCTCTGATTAGAAGAGCCGTTTATTTTTCAAAGTCGTTG
*
15481635 AGCCTCTGATTAGAAGAGCCATTTATTTTTTCAAAGTCGTTG
1 AGCCTCTGATTAGAAGAGCCGTTTA-TTTTTCAAAGTCGTTG
* * *
15481677 AGCCTCTAATTTGAGGAGCCGTTTATTTTTCAAAAGTCGTTG
1 AGCCTCTGATTAGAAGAGCCGTTTATTTTTC-AAAGTCGTTG
* * * *
15481719 AGCCTCTGATTAGAGGAGCTTTGTTTATATTTCTCAAAGTTGTTA
1 AGCCTCTGATTAGAAGAGC--CGTTTAT-TTT-TCAAAGTCGTTG
15481764 AGCCTCT-ACTTAGAAGAGC
1 AGCCTCTGA-TTAGAAGAGC
15481783 TTTGATCAAA
Statistics
Matches: 127, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
41 29 0.23
42 62 0.49
44 7 0.06
45 27 0.21
46 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (41 bp):
AGCCTCTGATTAGAAGAGCCGTTTATTTTTCAAAGTCGTTG
Found at i:15490387 original size:15 final size:15
Alignment explanation
Indices: 15490367--15490401 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
15490357 ATGATAATGC
15490367 CAAAAACTTGAACAA
1 CAAAAACTTGAACAA
15490382 CAAAAACTTGAACAA
1 CAAAAACTTGAACAA
15490397 CAAAA
1 CAAAA
15490402 TGATGAATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.63, C:0.20, G:0.06, T:0.11
Consensus pattern (15 bp):
CAAAAACTTGAACAA
Found at i:15491952 original size:50 final size:49
Alignment explanation
Indices: 15491855--15492091 Score: 304
Period size: 49 Copynumber: 4.8 Consensus size: 49
15491845 TAAGAACAGA
* * *
15491855 GAGATTTTTTAAGTTGTTAAGCCTCTGCTGAAAGGAG-ATTTTTCAAGAT
1 GAGA-TTTTAAAGTTGTTGAGCCTCTGCTGAAAGGAGCTTTTTTCAAGAT
*
15491904 GAGCATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTTCAAGAT
1 GAG-ATTTTAAAGTTGTTGAGCCTCTGCTGAAAGGAGCTTTTTTCAAGAT
*
15491954 GAGATTCTTAAAGTTGTTGAGCCTCTGCTGATAGGAGC-TTTTTCAAGAT
1 GAGATT-TTAAAGTTGTTGAGCCTCTGCTGAAAGGAGCTTTTTTCAAGAT
* *
15492003 GAGATTTTTAAAGTTATTGAGCCTCTGCTGAGAGGAGCTATTTTT-AAGA-
1 GAGA-TTTTAAAGTTGTTGAGCCTCTGCTGAAAGGAGCT-TTTTTCAAGAT
* **
15492052 -AAATTTTAAAGTTGTTGAGCCTCTATTGAAAGGAGCTTTT
1 GAGATTTTAAAGTTGTTGAGCCTCTGCTGAAAGGAGCTTTT
15492092 CCAAAAAAAA
Statistics
Matches: 170, Mismatches: 12, Indels: 15
0.86 0.06 0.08
Matches are distributed among these distances:
46 3 0.02
47 30 0.18
48 2 0.01
49 79 0.46
50 51 0.30
51 5 0.03
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.38
Consensus pattern (49 bp):
GAGATTTTAAAGTTGTTGAGCCTCTGCTGAAAGGAGCTTTTTTCAAGAT
Found at i:15492026 original size:99 final size:97
Alignment explanation
Indices: 15491852--15492091 Score: 342
Period size: 99 Copynumber: 2.5 Consensus size: 97
15491842 TTTTAAGAAC
* * *
15491852 AGAGAGATTTTTTAAGTTGTTAAGCCTCTGCTGAAAGGAGATTTTTCAAGATGAGCATTTTAAAG
1 AGAGAGA-TTTTAAAGTTGTTGAGCCTCTGCTGAAAGGAGCTTTTTCAAGATGAGCATTTTAAAG
*
15491917 TTGTTGAGCCTCTGCTGAGAGGAGCT-TTTTTCA
65 TTATTGAGCCTCTGCTGAGAGGAGCTATTTTT-A
*
15491950 AGATGAGATTCTTAAAGTTGTTGAGCCTCTGCTGATAGGAGCTTTTTCAAGATGAG-ATTTTTAA
1 AGA-GAGATT-TTAAAGTTGTTGAGCCTCTGCTGAAAGGAGCTTTTTCAAGATGAGCA-TTTTAA
15492014 AGTTATTGAGCCTCTGCTGAGAGGAGCTATTTTTA
63 AGTTATTGAGCCTCTGCTGAGAGGAGCTATTTTTA
* **
15492049 AGA-AAATTTTAAAGTTGTTGAGCCTCTATTGAAAGGAGCTTTT
1 AGAGAGATTTTAAAGTTGTTGAGCCTCTGCTGAAAGGAGCTTTT
15492092 CCAAAAAAAA
Statistics
Matches: 129, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
96 32 0.25
97 4 0.03
98 6 0.05
99 82 0.64
100 5 0.04
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.37
Consensus pattern (97 bp):
AGAGAGATTTTAAAGTTGTTGAGCCTCTGCTGAAAGGAGCTTTTTCAAGATGAGCATTTTAAAGT
TATTGAGCCTCTGCTGAGAGGAGCTATTTTTA
Found at i:15492135 original size:19 final size:19
Alignment explanation
Indices: 15492100--15492170 Score: 67
Period size: 19 Copynumber: 3.6 Consensus size: 19
15492090 TTCCAAAAAA
15492100 AAAATAATAATAAAAATAAAT
1 AAAA-AATAA-AAAAATAAAT
15492121 AAAAAATAAAAAAATAACA-
1 AAAAAATAAAAAAATAA-AT
*
15492140 AAGCAAA-AAAAAAAT-AAT
1 AA-AAAATAAAAAAATAAAT
15492158 AAATAAATAAAAA
1 AAA-AAATAAAAA
15492171 CTTTTAAGAA
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
17 1 0.02
18 6 0.14
19 23 0.53
20 9 0.21
21 4 0.09
ACGTcount: A:0.80, C:0.03, G:0.01, T:0.15
Consensus pattern (19 bp):
AAAAAATAAAAAAATAAAT
Found at i:15492324 original size:3 final size:3
Alignment explanation
Indices: 15492310--15492358 Score: 71
Period size: 3 Copynumber: 16.3 Consensus size: 3
15492300 ATTTTCAGTT
* **
15492310 TAA TAT TAA TAA TAA TTT TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
15492358 T
1 T
15492359 TAAAAAAAGA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:15493493 original size:17 final size:17
Alignment explanation
Indices: 15493471--15493525 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
15493461 TTAATTTTAA
15493471 AATAAAATTTAAAATAT
1 AATAAAATTTAAAATAT
*
15493488 AATAAAA-TGAAAA-AT
1 AATAAAATTTAAAATAT
* *
15493503 AATGAAACTTTATAATAAT
1 AAT-AAAATTTAAAAT-AT
15493522 AATA
1 AATA
15493526 TTGATAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
15 5 0.17
16 8 0.27
17 11 0.37
18 1 0.03
19 5 0.17
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.31
Consensus pattern (17 bp):
AATAAAATTTAAAATAT
Found at i:15493747 original size:20 final size:20
Alignment explanation
Indices: 15493697--15493747 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
15493687 TTTGTTAACA
*
15493697 ATAAATAAAAATTAATTAAT
1 ATAAATAAAAAATAATTAAT
*
15493717 AT-ATTAAAAAATAA-TAAT
1 ATAAATAAAAAATAATTAAT
15493735 ATAAATAAGAAAA
1 ATAAATAA-AAAA
15493748 AAGGAAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 6 0.23
19 14 0.54
20 6 0.23
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (20 bp):
ATAAATAAAAAATAATTAAT
Found at i:15494223 original size:20 final size:20
Alignment explanation
Indices: 15494185--15494223 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
15494175 ATATTTGAAT
* *
15494185 ATAAAAACAATAAATAAAAA
1 ATAAAAAAAATAAAGAAAAA
*
15494205 ATAAAAAAAATCAAGAAAA
1 ATAAAAAAAATAAAGAAAA
15494224 TTAATTTTCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.79, C:0.05, G:0.03, T:0.13
Consensus pattern (20 bp):
ATAAAAAAAATAAAGAAAAA
Found at i:15496314 original size:57 final size:56
Alignment explanation
Indices: 15496241--15496418 Score: 205
Period size: 57 Copynumber: 3.1 Consensus size: 56
15496231 GTATTTTTTT
* * *
15496241 AAGAAAAATTGGTACTTCCAACTTTTCTCCAAAATATTTTTTTGAAACTTTAATTTC
1 AAGAAAAATTGATACTTTCAACTTTTCTCAAAAATATTTTTTTGAAA-TTTAATTTC
** *
15496298 AAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAAAAATTTATTTTC
1 AAGAAAAATTGATACTTTCAACTTTT-CTCAAAAATATTTTTTTGAAATTTAATTTC
* * * * * *
15496355 AAGGAAAATTGATACTTTCAACCTTTTCT-TAAAATTTGTTTTTTGGAATTTTATTTA
1 AAGAAAAATTGATACTTTCAA-CTTTTCTCAAAAATAT-TTTTTTGAAATTTAATTTC
15496412 AAGAAAA
1 AAGAAAA
15496419 TCATTTTAAA
Statistics
Matches: 102, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
56 6 0.06
57 73 0.72
58 23 0.23
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.43
Consensus pattern (56 bp):
AAGAAAAATTGATACTTTCAACTTTTCTCAAAAATATTTTTTTGAAATTTAATTTC
Found at i:15496478 original size:17 final size:17
Alignment explanation
Indices: 15496456--15496501 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
15496446 AATTCTAATC
15496456 TAATAAATAAATAATAA
1 TAATAAATAAATAATAA
*
15496473 TAAT-AATAAAGAAATAA
1 TAATAAATAAA-TAATAA
15496490 TAATAAA-AAATA
1 TAATAAATAAATA
15496502 TAAGAAAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
16 7 0.28
17 16 0.64
18 2 0.08
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (17 bp):
TAATAAATAAATAATAA
Found at i:15496481 original size:20 final size:20
Alignment explanation
Indices: 15496456--15496495 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
15496446 AATTCTAATC
*
15496456 TAATAAATAAATAATAATAA
1 TAATAAAGAAATAATAATAA
15496476 TAATAAAGAAATAATAATAA
1 TAATAAAGAAATAATAATAA
15496496 AAAATATAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.28
Consensus pattern (20 bp):
TAATAAAGAAATAATAATAA
Found at i:15496495 original size:23 final size:23
Alignment explanation
Indices: 15496460--15496508 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 23
15496450 CTAATCTAAT
15496460 AAATAAATAATAATAATAATA-AAG
1 AAATAAATAATAA-AA-AATATAAG
15496484 AAAT-AATAATAAAAAATATAAG
1 AAATAAATAATAAAAAATATAAG
15496506 AAA
1 AAA
15496509 GAAAAAAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.17
22 8 0.33
23 8 0.33
24 4 0.17
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.22
Consensus pattern (23 bp):
AAATAAATAATAAAAAATATAAG
Found at i:15497888 original size:130 final size:126
Alignment explanation
Indices: 15497610--15498360 Score: 660
Period size: 130 Copynumber: 5.8 Consensus size: 126
15497600 GACATTGGGT
* * * * * **
15497610 AAAATAAACAAAGCTCCTTTAAACAGAGGCTCCACGACTTTG--GAAAT-AA-ATGGCTCCTCTA
1 AAAATAAACAAAGCTCCTCTAATCAGAGGCTCAATGAC-TTGAAAAAATAAACAAAGCTCCTCTA
* * * *
15497671 ATCAGAAGCTCAACGACTTT-GAAAAATAAATAAAGCTCTTCTAAACAAAGGCAATCACGACTTT
65 A-AAGAGGCTCAACGACTTTGGAAAAATAAAT--AGCTCTTCTAAACAGAGGC-ACCACGAC-TT
15497735 TG
125 TG
* * * *
15497737 AAAATAAACAAAACTCTTCTAATTAGAGGCTCAATGACTTGAAAGAAAATAAACAAAGCTCCTAT
1 AAAATAAACAAAGCTCCTCTAATCAGAGGCTCAATGACTTG-AA-AAAATAAACAAAGCTCCTCT
* * * * *
15497802 AAGAAGAGGCTCAGCGACTTTGGGAACAATAAATTGCTCTTCTAAACAGAGACACCACAACTTTG
64 AA-AAGAGGCTCAACGACTTT-GGAAAAATAAATAGCTCTTCTAAACAGAGGCACCACGACTTTG
* * *
15497867 AAAATAAACAAAGCTCATCTAATCAAAGGCTCAACGACTTTG-AAAAATAAACAAAGCTCCTCTA
1 AAAATAAACAAAGCTCCTCTAATCAGAGGCTCAATGAC-TTGAAAAAATAAACAAAGCTCCTCTA
* *
15497931 AACAGAGGCTCAACGACTTT-GAAAAATAAATGAAGCTATTCTAAACAAAGGCAACCACGACTTT
65 AA-AGAGGCTCAACGACTTTGGAAAAATAAAT--AGCTCTTCTAAACAGAGGC-ACCACGAC-TT
15497995 TG
125 TG
* *
15497997 AAAATAAACAAAACTCCTCTAATCAGAGGCTCAATGACTTGAAAGAAAATAAACAAAGCTCCTAT
1 AAAATAAACAAAGCTCCTCTAATCAGAGGCTCAATGACTTG-AA-AAAATAAACAAAGCTCCTCT
* * * * * * *
15498062 AATAAGATGCTTAATGACTTTGGAAAAATAAACAAAGCTCATCTAATCAGAGGCTCCACGACTTT
64 AA-AAGAGGCTCAACGACTTTGGAAAAAT-AA-ATAGCTCTTCTAAACAGAGGCACCACGACTTT
15498127 GG
126 -G
* * * * * *
15498129 AAAAATAAATAAAGCTCCTTTAAACAGAAGTTCAACGACTTTGAAAAAATAAACAAAGCTCCTCT
1 -AAAATAAACAAAGCTCCTCTAATCAGAGGCTCAATGAC-TTGAAAAAATAAACAAAGCTCCTCT
* * * * * ** * *
15498194 AATCAGAGGCTC-ACAACTTTAG-AAAATAACTAAAGCTCCTCTAATTAGAGGCTCAACGACTTT
64 AA-AAGAGGCTCAACGACTTTGGAAAAATAA--ATAGCTCTTCTAAACAGAGGCACCACGACTTT
15498257 G
126 G
* *
15498258 AAAAAATAAACAAAGCTCCTTTAATCAGAGG-TCAATGACTTTTG-AAAAATAAAGAAAGCTCCT
1 --AAAATAAACAAAGCTCCTCTAATCAGAGGCTCAATGAC--TTGAAAAAATAAACAAAGCTCCT
* *
15498321 CTAAACAGAGGCTCAACGACTTTGAAAAAATAAATTGCTC
62 CTAAA-AGAGGCTCAACGACTTTGGAAAAATAAATAGCTC
15498361 CTTGACAATC
Statistics
Matches: 517, Mismatches: 77, Indels: 58
0.79 0.12 0.09
Matches are distributed among these distances:
126 13 0.03
127 32 0.06
128 52 0.10
129 56 0.11
130 151 0.29
131 29 0.06
132 112 0.22
133 56 0.11
134 15 0.03
135 1 0.00
ACGTcount: A:0.44, C:0.20, G:0.14, T:0.23
Consensus pattern (126 bp):
AAAATAAACAAAGCTCCTCTAATCAGAGGCTCAATGACTTGAAAAAATAAACAAAGCTCCTCTAA
AAGAGGCTCAACGACTTTGGAAAAATAAATAGCTCTTCTAAACAGAGGCACCACGACTTTG
Found at i:15497924 original size:43 final size:43
Alignment explanation
Indices: 15497573--15498354 Score: 667
Period size: 44 Copynumber: 18.0 Consensus size: 43
15497563 AAATTTTGAT
* * ** * *
15497573 CAAAGCTCCTTTAAGCAGATACTCAACGACATTGGGTAAAATAAA
1 CAAAGCTCCTCTAATCAGAGGCTCAACGAC-TT-TGAAAAATAAA
* * * *
15497618 CAAAGCTCCTTTAAACAGAGGCTCCACGACTTTG-GAAAT-AA
1 CAAAGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAA
** *
15497659 -ATGGCTCCTCTAATCAGAAGCTCAACGACTTTGAAAAATAAA
1 CAAAGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAA
* * * *
15497701 TAAAGCTCTTCTAAACAAAGGCAATC-ACGACTTTTG-AAAATAAA
1 CAAAGCTCCTCTAATCAGAGGC--TCAACGAC-TTTGAAAAATAAA
* * * *
15497745 CAAAACTCTTCTAATTAGAGGCTCAATGAC-TTGAAAGAAAATAAA
1 CAAAGCTCCTCTAATCAGAGGCTCAACGACTTTG--A-AAAATAAA
* ** * *
15497790 CAAAGCTCCTATAAGAAGAGGCTCAGCGACTTTGGGAACAAT-AA
1 CAAAGCTCCTCTAATCAGAGGCTCAACGACTTT--GAAAAATAAA
** * * * * * *
15497834 -ATTGCTCTTCTAAACAGAGACACCACAACTTTG-AAAATAAA
1 CAAAGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAA
* *
15497875 CAAAGCTCATCTAATCAAAGGCTCAACGACTTTGAAAAATAAA
1 CAAAGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAA
*
15497918 CAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAATAAA
1 CAAAGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAA
** ** * * * *
15497961 TGAAGCTATTCTAAACAAAGGCAACCACGACTTTTG-AAAATAAA
1 CAAAGCTCCTCTAATCAGAGGC-TCAACGAC-TTTGAAAAATAAA
* *
15498005 CAAAACTCCTCTAATCAGAGGCTCAATGAC-TTGAAAGAAAATAAA
1 CAAAGCTCCTCTAATCAGAGGCTCAACGACTTTG--A-AAAATAAA
* * * * *
15498050 CAAAGCTCCTATAATAAGATGCTTAATGACTTTGGAAAAATAAA
1 CAAAGCTCCTCTAATCAGAGGCTCAACGACTTT-GAAAAATAAA
* *
15498094 CAAAGCTCATCTAATCAGAGGCTCCACGACTTTGGAAAAATAAA
1 CAAAGCTCCTCTAATCAGAGGCTCAACGACTTT-GAAAAATAAA
* * * * *
15498138 TAAAGCTCCTTTAAACAGAAGTTCAACGACTTTGAAAAAATAAA
1 CAAAGCTCCTCTAATCAGAGGCTCAACGACTTTG-AAAAATAAA
*
15498182 CAAAGCTCCTCTAATCAGAGGCTC-ACAACTTT-AGAAAAT-AA
1 CAAAGCTCCTCTAATCAGAGGCTCAACGACTTTGA-AAAATAAA
*
15498223 CTAAAGCTCCTCTAATTAGAGGCTCAACGACTTTGAAAAAATAAA
1 C-AAAGCTCCTCTAATCAGAGGCTCAACGACTTTG-AAAAATAAA
* *
15498268 CAAAGCTCCTTTAATCAGAGG-TCAATGACTTTTGAAAAATAAA
1 CAAAGCTCCTCTAATCAGAGGCTCAACGAC-TTTGAAAAATAAA
* *
15498311 GAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAAATAAA
1 CAAAGCTCCTCTAATCAGAGGCTCAACGACTTTG-AAAAATAAA
15498355 TTGCTCCTTG
Statistics
Matches: 594, Mismatches: 108, Indels: 71
0.77 0.14 0.09
Matches are distributed among these distances:
40 31 0.05
41 19 0.03
42 59 0.10
43 164 0.28
44 205 0.35
45 109 0.18
46 5 0.01
47 1 0.00
48 1 0.00
ACGTcount: A:0.43, C:0.20, G:0.14, T:0.23
Consensus pattern (43 bp):
CAAAGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAA
Found at i:15499362 original size:14 final size:14
Alignment explanation
Indices: 15499345--15499395 Score: 68
Period size: 14 Copynumber: 3.7 Consensus size: 14
15499335 TGAGTTTTTC
*
15499345 TTTTTCA-TTCCTT
1 TTTTTCATTTCATT
**
15499358 TTTTTTTTTTCATT
1 TTTTTCATTTCATT
15499372 TTTTTCATTTCATT
1 TTTTTCATTTCATT
15499386 TTTTTCATTT
1 TTTTTCATTT
15499396 TTTTCATTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
13 5 0.16
14 27 0.84
ACGTcount: A:0.10, C:0.14, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTTTCATTTCATT
Found at i:15499375 original size:9 final size:9
Alignment explanation
Indices: 15499361--15499408 Score: 68
Period size: 9 Copynumber: 5.8 Consensus size: 9
15499351 ATTCCTTTTT
15499361 TTTTTTTCA
1 TTTTTTTCA
15499370 TTTTTTTCA
1 TTTTTTTCA
15499379 ----TTTCA
1 TTTTTTTCA
15499384 TTTTTTTCA
1 TTTTTTTCA
15499393 TTTTTTTCA
1 TTTTTTTCA
15499402 TTTTTTT
1 TTTTTTT
15499409 AAAGCATAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
5 5 0.14
9 30 0.86
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTTTTCA
Found at i:15499375 original size:32 final size:31
Alignment explanation
Indices: 15499347--15499408 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 31
15499337 AGTTTTTCTT
15499347 TTTCATTCCTTTTT-TTTTTTTCATTTTTTTCA
1 TTTCATT--TTTTTATTTTTTTCATTTTTTTCA
15499379 TTTCATTTTTTTCATTTTTTTCATTTTTTT
1 TTTCATTTTTTT-ATTTTTTTCATTTTTTT
15499409 AAAGCATAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
30 5 0.18
32 23 0.82
ACGTcount: A:0.10, C:0.13, G:0.00, T:0.77
Consensus pattern (31 bp):
TTTCATTTTTTTATTTTTTTCATTTTTTTCA
Found at i:15499387 original size:23 final size:23
Alignment explanation
Indices: 15499361--15499404 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
15499351 ATTCCTTTTT
15499361 TTTTTTTCATTTTTTTCATTTCA
1 TTTTTTTCATTTTTTTCATTTCA
15499384 TTTTTTTCATTTTTTTCATTT
1 TTTTTTTCATTTTTTTCATTT
15499405 TTTTAAAGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.77
Consensus pattern (23 bp):
TTTTTTTCATTTTTTTCATTTCA
Found at i:15507140 original size:21 final size:20
Alignment explanation
Indices: 15507107--15507151 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
15507097 CTTAGGTACT
15507107 TTCTTCCTCTAATTCAGCATA
1 TTCTTCCTCTAATTC-GCATA
* * *
15507128 TTCTTGCTTTAATTCGCTTA
1 TTCTTCCTCTAATTCGCATA
15507148 TTCT
1 TTCT
15507152 CTTCAGTGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.18, C:0.24, G:0.07, T:0.51
Consensus pattern (20 bp):
TTCTTCCTCTAATTCGCATA
Done.