Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_019168032.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_285, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 38852
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27


Found at i:7983 original size:13 final size:13

Alignment explanation


    Indices: 7965--7989  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       7955 GTCTAAAGAA

                         
       7965 GGGTAAAAGCCAT
          1 GGGTAAAAGCCAT

                        
       7978 GGGTAAAAGCCA
          1 GGGTAAAAGCCA

       7990 AGTGAAGTAG


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.40, C:0.16, G:0.32, T:0.12


Consensus pattern (13 bp):   
GGGTAAAAGCCAT

Found at i:16378 original size:16 final size:15

Alignment explanation


    Indices: 16354--16388  Score: 52
    Period size: 16  Copynumber: 2.3  Consensus size: 15

      16344 ACTATGAAGG

                *          
      16354 TGTACCAAGAACCAT
          1 TGTAACAAGAACCAT

                            
      16369 CTGTAACAAGAACCAT
          1 -TGTAACAAGAACCAT

                
      16385 TGTA
          1 TGTA

      16389 TGCCAAGGAC


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  15    4  0.22
  16   14  0.78

ACGTcount: A:0.40, C:0.23, G:0.14, T:0.23


Consensus pattern (15 bp):   
TGTAACAAGAACCAT

Found at i:25327 original size:45 final size:45

Alignment explanation


    Indices: 25276--25379  Score: 109
    Period size: 45  Copynumber: 2.3  Consensus size: 45

      25266 CATTATCGAG

                       *    *     * *              *     
      25276 GGCACTTACCTTAACCGCCATTGGGACAAGCTAGCCCTTGGTATA
          1 GGCACTTACCTCAACCACCATTAGCACAAGCTAGCCCTTAGTATA

                   **                   *             *  
      25321 GGCACTTGTCTCAACCACCATTAGCACATGCTAGCCCTTAGTGTA
          1 GGCACTTACCTCAACCACCATTAGCACAAGCTAGCCCTTAGTATA

                 * *      
      25366 GGCACATGCCTCAA
          1 GGCACTTACCTCAA

      25380 TCAACATTGG


Statistics
Matches: 48,  Mismatches: 11, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  45   48  1.00

ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24


Consensus pattern (45 bp):   
GGCACTTACCTCAACCACCATTAGCACAAGCTAGCCCTTAGTATA

Found at i:25511 original size:45 final size:45

Alignment explanation


    Indices: 25417--25527  Score: 116
    Period size: 45  Copynumber: 2.5  Consensus size: 45

      25407 TATGGGTAGT

                                                   *    *
      25417 TACCTTAAACACCATTGGCACATGCTGGCCCTTGCAGCAGGCACT
          1 TACCTTAAACACCATTGGCACATGCTGGCCCTTGCAGCAAGCACA

                  *      *                 *   **     *   
      25462 TACCTTGAACACCTTTGGCACATGCTAGG-CTTTGGTGCAAGTACA
          1 TACCTTAAACACCATTGGCACATGCT-GGCCCTTGCAGCAAGCACA

                    *     *      
      25507 TACCTTAACCACCACTGGCAC
          1 TACCTTAAACACCATTGGCAC

      25528 CTGTAGACCC


Statistics
Matches: 53,  Mismatches: 12, Indels: 2
        0.79            0.18        0.03

Matches are distributed among these distances:
  45   51  0.96
  46    2  0.04

ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24


Consensus pattern (45 bp):   
TACCTTAAACACCATTGGCACATGCTGGCCCTTGCAGCAAGCACA
Done.