Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168033.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_286, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38845
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Found at i:2285 original size:20 final size:21
Alignment explanation
Indices: 2250--2292 Score: 79
Period size: 20 Copynumber: 2.1 Consensus size: 21
2240 ACTAAGGCCC
2250 AGCATGTGCTGATGGTGTTCG
1 AGCATGTGCTGATGGTGTTCG
2271 AGCATGTGC-GATGGTGTTCG
1 AGCATGTGCTGATGGTGTTCG
2291 AG
1 AG
2293 GTAACCTCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.16, C:0.14, G:0.40, T:0.30
Consensus pattern (21 bp):
AGCATGTGCTGATGGTGTTCG
Found at i:4037 original size:173 final size:171
Alignment explanation
Indices: 3800--4189 Score: 438
Period size: 173 Copynumber: 2.3 Consensus size: 171
3790 CTGCCGCTTG
* * * * * * **
3800 TTTCGTAGGTTGACTTAGGTATATGGAGTCCATTCCTAGTCTAAGATCGGACCGGATTGAGGGTT
1 TTTCGTAGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCTCAGACCGAACCGAGGGTT
* * * * * * *
3865 GTGGTAGCAGGACCCACAGCAGGATCGACAGCACGCAGAAGGGGGACTGGGTCGATCCTCGGGCT
66 GGGGTAGCAAGACCCACAGCAGGATCAACAACACGCAGAA-GGGGACCGGATCAATCCTC-GGCT
** *** * *
3930 TGTGCATCCTACCTCTTTAGTTGGCTCAGTGCCCGCATGCTCA
129 TACGCATCCTACCTCTTTAGCCAGCTCAATACCCGCATGCTCA
* ** *
3973 TTTCGTAGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCAAAGCTCAGACCGAACCGAGGGTT
1 TTTCGTAGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCTCAGACCGAACCGAGGGTT
** * *
4038 GGGGTAGCAAGACTTACAGTAGGATCAACAACACGCAGAAGGGGACCGGATCAATCGTCGGCTTA
66 GGGGTAGCAAGACCCACAGCAGGATCAACAACACGCAGAAGGGGACCGGATCAATCCTCGGCTTA
* * *
4103 CGCATCCTACCTCTTTAGCCAGCTTAATACCCGTATTCTCA
131 CGCATCCTACCTCTTTAGCCAGCTCAATACCCGCATGCTCA
* * *
4144 TTTCATGGGTTGACTTAGGCATATGGTGTTCATTCCCAGTCTAAGC
1 TTTCGTAGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGC
4190 CCTAGCTGGA
Statistics
Matches: 177, Mismatches: 40, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
171 76 0.43
172 15 0.08
173 86 0.49
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (171 bp):
TTTCGTAGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCTCAGACCGAACCGAGGGTT
GGGGTAGCAAGACCCACAGCAGGATCAACAACACGCAGAAGGGGACCGGATCAATCCTCGGCTTA
CGCATCCTACCTCTTTAGCCAGCTCAATACCCGCATGCTCA
Found at i:11370 original size:19 final size:19
Alignment explanation
Indices: 11346--11383 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
11336 GTTGGGCCAA
11346 GCCCACAACCACAGCTTCT
1 GCCCACAACCACAGCTTCT
*
11365 GCCCACAACCATAGCTTCT
1 GCCCACAACCACAGCTTCT
11384 ACTTGCACCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.26, C:0.45, G:0.11, T:0.18
Consensus pattern (19 bp):
GCCCACAACCACAGCTTCT
Found at i:12155 original size:45 final size:45
Alignment explanation
Indices: 12072--12160 Score: 115
Period size: 45 Copynumber: 2.0 Consensus size: 45
12062 GATAGTGATC
* * * ** *
12072 GAGACAAGTGCTTGCACCAAGGGCTAGCTTGTGTCGATGGTGGTT
1 GAGACAAGTGCCTGCACCAAGGCCCAGCACGTGCCGATGGTGGTT
*
12117 GAGACACGTGCCTGCACCAAGGCCCAGCACGTGCCGATGGTGGT
1 GAGACAAGTGCCTGCACCAAGGCCCAGCACGTGCCGATGGTGGT
12161 CGAGGCAACC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.20, C:0.25, G:0.35, T:0.20
Consensus pattern (45 bp):
GAGACAAGTGCCTGCACCAAGGCCCAGCACGTGCCGATGGTGGTT
Found at i:12640 original size:293 final size:293
Alignment explanation
Indices: 12077--12679 Score: 651
Period size: 293 Copynumber: 2.1 Consensus size: 293
12067 TGATCGAGAC
* *
12077 AAGTGCTTGCACCAAGGGCTAGCTTGTGTCGATGGTGGTTGAGACACGTGCCTGCACCAAGGCCC
1 AAGTGCTCGCACCAAGGGCTAGCTTGTGTCAATGGTGGTTGAGACACGTGCCTGCACCAAGGCCC
* * * **
12142 AGCACGTGCCGATGGTGGTCGAGGCAACCACCAGCACCAACTCGAGGCATGTGCCCGTACCAAGG
66 AACACATGCCAATGGTGGTCGAGGCAACCACCAGCACCAACTCGAGGCATGTGCCCACACCAAGG
* * * * * * * *
12207 CCCAGCACGTGCCGATGGTGTTCGAGGCAATCGCCCACACCAAGGGCCATCTTCTATCGATGGTT
131 CCCAGAACGTACCGATGGTCTTCGAGGCAACCGCCCACACCAAGGCCCAGCATATATCGATGGTT
* * * * * * *
12272 ATCGAGGCAACTGCCTACACCAAGGCCCAACATGTGCTAATGGTGTTCAATGCAACTACCCGCAC
196 ATCAAGGCAACCGCCTACACAAAGGCCCAACATCTGCTAATGGTGATCAAGGCAACTACCCACAC
* * *
12337 TAATGGCCATCTTCTGCCAATGGTGGTCGAGGA
261 TAAGGGCCATCATCTACCAATGGTGGTCGAGGA
* * *
12370 AAGTGCTCGCACCAAGGGCTGGCTTGTGTCAATGGTGGTTGAGGCATGTGGCC-GCACCAAGGCC
1 AAGTGCTCGCACCAAGGGCTAGCTTGTGTCAATGGTGGTTGAGACACGT-GCCTGCACCAAGGCC
* * * * * *
12434 CAACATATGCCAATGGTGGTTGAGGCAACCGCCTGCACCAGCTCGAGGTATGTGCCCACACCAAG
65 CAACACATGCCAATGGTGGTCGAGGCAACCACCAGCACCAACTCGAGGCATGTGCCCACACCAAG
* * * * *
12499 GCCCAGAACGTACCGATGGTCTTCGAGGTAACCGTCCGCACCATGGCCCAGCATATGTCGATGGT
130 GCCCAGAACGTACCGATGGTCTTCGAGGCAACCGCCCACACCAAGGCCCAGCATATATCGATGGT
* * * * *
12564 GT-TCAAGGTAACCGCTCGTAC-CAAAGG-CCATCTTCT-ATCAATGGTGATCGAGGCAACCT-C
195 -TATCAAGGCAACCGC-C-TACACAAAGGCCCAACATCTGCT-AATGGTGATCAAGGCAA-CTAC
* * * * *
12624 CTACATTAGGGGCCATCATCTACCGATGGTGGTCGAGGT
255 CCACACTAAGGGCCATCATCTACCAATGGTGGTCGAGGA
* *
12663 AAGTGCCCACACCAAGG
1 AAGTGCTCGCACCAAGG
12680 CCCAACATGT
Statistics
Matches: 253, Mismatches: 51, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
292 1 0.00
293 237 0.94
294 12 0.05
295 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (293 bp):
AAGTGCTCGCACCAAGGGCTAGCTTGTGTCAATGGTGGTTGAGACACGTGCCTGCACCAAGGCCC
AACACATGCCAATGGTGGTCGAGGCAACCACCAGCACCAACTCGAGGCATGTGCCCACACCAAGG
CCCAGAACGTACCGATGGTCTTCGAGGCAACCGCCCACACCAAGGCCCAGCATATATCGATGGTT
ATCAAGGCAACCGCCTACACAAAGGCCCAACATCTGCTAATGGTGATCAAGGCAACTACCCACAC
TAAGGGCCATCATCTACCAATGGTGGTCGAGGA
Found at i:12699 original size:45 final size:45
Alignment explanation
Indices: 12646--12766 Score: 145
Period size: 45 Copynumber: 2.7 Consensus size: 45
12636 CCATCATCTA
*
12646 CCGATGGTGGTCGAGGTAAGT-GCCCACACCAAGGCCCAACATGTG
1 CCGATGGTGCTCGAGGTAA-TCGCCCACACCAAGGCCCAACATGTG
* * *
12691 CCGGTGGTGCTAGAGGTAATCGCCCACACCAAGGCCCAGCATGTG
1 CCGATGGTGCTCGAGGTAATCGCCCACACCAAGGCCCAACATGTG
* * * * *
12736 TCGATGGTGTTCGAGGCAACCGCACACACCA
1 CCGATGGTGCTCGAGGTAATCGCCCACACCA
12767 GGGATCATTT
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 1 0.02
45 63 0.98
ACGTcount: A:0.24, C:0.31, G:0.30, T:0.16
Consensus pattern (45 bp):
CCGATGGTGCTCGAGGTAATCGCCCACACCAAGGCCCAACATGTG
Found at i:13812 original size:26 final size:26
Alignment explanation
Indices: 13782--13839 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
13772 ATAGGTTGAC
13782 TTAAGCATACGGAGTTCATTCCCAGT
1 TTAAGCATACGGAGTTCATTCCCAGT
*
13808 TTAAGCATATGGAGTTCATTCCCAGT
1 TTAAGCATACGGAGTTCATTCCCAGT
*
13834 CTAAGC
1 TTAAGC
13840 TCGGACCGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (26 bp):
TTAAGCATACGGAGTTCATTCCCAGT
Found at i:14228 original size:157 final size:156
Alignment explanation
Indices: 13875--14229 Score: 363
Period size: 157 Copynumber: 2.3 Consensus size: 156
13865 GTAGGACCCG
* * ** * * *
13875 TAGCAGGATCGACAGCATGCAGAGAGGGATTGGGTTGATCCTCGACTTACGCATCCTACCCTCTG
1 TAGCAGGATCCACACCACACAGAGAGGGATCGGGTTGATCCTCAACTTACACATCCTACCCTCTG
* * * * *** * *
13940 GCCGACTCAGTTCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATATGTGTTCATTCCTAGTCT
66 GCCAACTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAAAAGTTCATTCCCAATCT
* * * **
14005 GAACCCTAGTCGGACTGAGGGACTCA
131 GAACCCCAGCCAGACCAAGGGACTCA
* * * * * * *
14031 TAGCAGGATCGACAGCACATAGAGAGGGATCAGATTGATCCTCAACTTACACATTCTACCTCTTT
1 TAGCAGGATCCACACCACACAGAGAGGGATCGGGTTGATCCTCAACTTACACATCCTACC-CTCT
* *
14096 GGCCAACTTAGTGCCCGCACGCTCATTTCATTGGTTGACTTAGGCATACAAAGTTCATTCCCAAT
65 GGCCAACTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATA-AAAGTTCATTCCCAAT
*
14161 CT-AAGCCCCAGCCAGACCAAGGGAC-CG
129 CTGAA-CCCCAGCCAGACCAAGGGACTCA
* * *
14188 TAGCAGGATCCATACCACACAGAAAGGGATCGGGTCGATCCT
1 TAGCAGGATCCACACCACACAGAGAGGGATCGGGTTGATCCT
14230 TGGCTTGTGC
Statistics
Matches: 161, Mismatches: 35, Indels: 5
0.80 0.17 0.02
Matches are distributed among these distances:
156 51 0.32
157 82 0.51
158 28 0.17
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (156 bp):
TAGCAGGATCCACACCACACAGAGAGGGATCGGGTTGATCCTCAACTTACACATCCTACCCTCTG
GCCAACTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAAAAGTTCATTCCCAATCT
GAACCCCAGCCAGACCAAGGGACTCA
Found at i:23954 original size:22 final size:22
Alignment explanation
Indices: 23926--23969 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
23916 TTTCATTTAC
*
23926 CATGCCTGGCCAAGCCTATTCA
1 CATGCCTGGCCAAGCCCATTCA
23948 CATGCCTGGCCAAGCCCATTCA
1 CATGCCTGGCCAAGCCCATTCA
23970 TGTGTCATGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.23, C:0.39, G:0.18, T:0.20
Consensus pattern (22 bp):
CATGCCTGGCCAAGCCCATTCA
Found at i:32748 original size:19 final size:20
Alignment explanation
Indices: 32726--32767 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
32716 AAAATATCAA
*
32726 TTATTATTAATTT-CATTTT
1 TTATTATTAATTTACATTGT
*
32745 TTATTATTATTTTACATTGT
1 TTATTATTAATTTACATTGT
32765 TTA
1 TTA
32768 AATCAATCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (20 bp):
TTATTATTAATTTACATTGT
Found at i:33181 original size:16 final size:18
Alignment explanation
Indices: 33144--33193 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 18
33134 ATTTTACCAG
33144 TAATAATATAAAATAACAA
1 TAATAAT-TAAAATAACAA
33163 TAATAATTAAAA-AAC-A
1 TAATAATTAAAATAACAA
* *
33179 TAAAAATTAACATAA
1 TAATAATTAAAATAA
33194 AAAATCAACA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 11 0.39
17 5 0.18
18 5 0.18
19 7 0.25
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (18 bp):
TAATAATTAAAATAACAA
Found at i:33192 original size:12 final size:12
Alignment explanation
Indices: 33175--33213 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
33165 ATAATTAAAA
*
33175 AACATAAAAATT
1 AACATAAAAATC
33187 AACATAAAAAATC
1 AACAT-AAAAATC
33200 AACATAAAAATC
1 AACATAAAAATC
33212 AA
1 AA
33214 AATGGAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 14 0.56
13 11 0.44
ACGTcount: A:0.69, C:0.13, G:0.00, T:0.18
Consensus pattern (12 bp):
AACATAAAAATC
Found at i:34008 original size:3 final size:3
Alignment explanation
Indices: 34000--34058 Score: 68
Period size: 3 Copynumber: 20.0 Consensus size: 3
33990 TTTTAAAGAT
* * *
34000 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAAA GAA CAA -AA TTA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA
34045 T-A TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA
34059 AAAAAGAATA
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
2 4 0.08
3 44 0.88
4 2 0.04
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:34051 original size:29 final size:30
Alignment explanation
Indices: 34014--34073 Score: 93
Period size: 32 Copynumber: 1.9 Consensus size: 30
34004 AATAATAATA
34014 ATAATAATAATAATAATAAAGAACAAAATTAT
1 ATAATAATAATAA-AA-AAAGAACAAAATTAT
*
34046 ATAATAATAATAAAAAAAGAATAAAATT
1 ATAATAATAATAAAAAAAGAACAAAATT
34074 GGTGCCTACA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 12 0.44
31 2 0.07
32 13 0.48
ACGTcount: A:0.68, C:0.02, G:0.03, T:0.27
Consensus pattern (30 bp):
ATAATAATAATAAAAAAAGAACAAAATTAT
Found at i:34355 original size:38 final size:38
Alignment explanation
Indices: 34240--34525 Score: 371
Period size: 38 Copynumber: 7.4 Consensus size: 38
34230 AGAGGCTATA
* *
34240 AAACTTTAAATTCAAAAAGCT-CTTCTCACCAGAGGCAAC
1 AAACTTTAAATT-AAAAAGCTCCTT-TAACCAAAGGCAAC
34279 AAACTTTAAATTAAAAAGCT-CTATT-ACCAAAGGCAAC
1 AAACTTTAAATTAAAAAGCTCCT-TTAACCAAAGGCAAC
** *
34316 AAACTTTAAATCCAAAAGCTCATTTAACCAAAGGCAAC
1 AAACTTTAAATTAAAAAGCTCCTTTAACCAAAGGCAAC
34354 AAACTTTAAATTCAAAAAGCTCCTTTAACCAAAGGCAAC
1 AAACTTTAAATT-AAAAAGCTCCTTTAACCAAAGGCAAC
* * * * *
34393 AAACTTTAAATGTTAAAAGGCTCCTCTCATCAGAGGCAAC
1 AAACTTTAAA--TTAAAAAGCTCCTTTAACCAAAGGCAAC
* *
34433 AAACTTTAAATTCAAAAGCTCCTTTAACCAAAGGCAAT
1 AAACTTTAAATTAAAAAGCTCCTTTAACCAAAGGCAAC
**
34471 AAACTTTAAATTCTAAAGCTCCTTTAACCAAAGGCAAC
1 AAACTTTAAATTAAAAAGCTCCTTTAACCAAAGGCAAC
34509 AAACTTTAAATTAAAAA
1 AAACTTTAAATTAAAAA
34526 TCTGAGAGGC
Statistics
Matches: 218, Mismatches: 23, Indels: 13
0.86 0.09 0.05
Matches are distributed among these distances:
37 31 0.14
38 107 0.49
39 47 0.22
40 31 0.14
41 2 0.01
ACGTcount: A:0.45, C:0.22, G:0.09, T:0.24
Consensus pattern (38 bp):
AAACTTTAAATTAAAAAGCTCCTTTAACCAAAGGCAAC
Found at i:34467 original size:117 final size:115
Alignment explanation
Indices: 34240--34525 Score: 418
Period size: 117 Copynumber: 2.5 Consensus size: 115
34230 AGAGGCTATA
* *
34240 AAACTTTAAATTCAAAAAGCT-CTTCTCACCAGAGGCAACAAACTTTAAA-TTAAAAAGCTCTAT
1 AAACTTTAAATTCAAAAAGCTCCTT-TAACCAAAGGCAACAAACTTTAAATTTAAAAAGCTCTAT
*
34303 TACCAAAGGCAACAAACTTTAAATCCAAAAGCTCATTTAACCAAAGGCAAC
65 CACCAAAGGCAACAAACTTTAAATCCAAAAGCTCATTTAACCAAAGGCAAC
* *
34354 AAACTTTAAATTCAAAAAGCTCCTTTAACCAAAGGCAACAAACTTTAAATGTTAAAAGGCTCCTC
1 AAACTTTAAATTCAAAAAGCTCCTTTAACCAAAGGCAACAAACTTTAAAT-TTAAAAAGCT-CTA
* * * * *
34419 TCATCAGAGGCAACAAACTTTAAATTCAAAAGCTCCTTTAACCAAAGGCAAT
64 TCACCAAAGGCAACAAACTTTAAATCCAAAAGCTCATTTAACCAAAGGCAAC
*
34471 AAACTTTAAATTC-TAAAGCTCCTTTAACCAAAGGCAACAAACTTTAAA-TTAAAAA
1 AAACTTTAAATTCAAAAAGCTCCTTTAACCAAAGGCAACAAACTTTAAATTTAAAAA
34526 TCTGAGAGGC
Statistics
Matches: 156, Mismatches: 12, Indels: 8
0.89 0.07 0.05
Matches are distributed among these distances:
114 49 0.31
115 3 0.02
116 43 0.28
117 61 0.39
ACGTcount: A:0.45, C:0.22, G:0.09, T:0.24
Consensus pattern (115 bp):
AAACTTTAAATTCAAAAAGCTCCTTTAACCAAAGGCAACAAACTTTAAATTTAAAAAGCTCTATC
ACCAAAGGCAACAAACTTTAAATCCAAAAGCTCATTTAACCAAAGGCAAC
Found at i:34503 original size:155 final size:152
Alignment explanation
Indices: 34240--34525 Score: 448
Period size: 155 Copynumber: 1.9 Consensus size: 152
34230 AGAGGCTATA
*
34240 AAACTTTAAATTCAAAAAGCTCTTCTCACCAGAGGCAACAAACTTTAAATTAAAAAGCTCTATTA
1 AAACTTTAAATTCAAAAAGCTCCTCTCACCAGAGGCAACAAACTTTAAATTAAAAAGCTCTATTA
34305 CCAAAGGCAACAAACTTTAAATCCAAAAGCTCATTTAACCAAAGGCAACAAACTTTAAATTCAAA
66 CCAAAGGCAACAAACTTTAAATCCAAAAGCTCATTTAACCAAAGGCAACAAACTTTAAATT-AAA
34370 AAGCTCCTTTAACCAAAGGCAAC
130 AAGCTCCTTTAACCAAAGGCAAC
* * * *
34393 AAACTTTAAATGTTAAAAGGCTCCTCTCATCAGAGGCAACAAACTTTAAATTCAAAAGCTCCT-T
1 AAACTTTAAAT-TCAAAAAGCTCCTCTCACCAGAGGCAACAAACTTTAAATTAAAAAGCT-CTAT
* * * *
34457 TAACCAAAGGCAATAAACTTTAAATTCTAAAGCTCCTTTAACCAAAGGCAACAAACTTTAAATTA
64 T-ACCAAAGGCAACAAACTTTAAATCCAAAAGCTCATTTAACCAAAGGCAACAAACTTTAAATTA
34522 AAAA
128 AAAA
34526 TCTGAGAGGC
Statistics
Matches: 121, Mismatches: 9, Indels: 5
0.90 0.07 0.04
Matches are distributed among these distances:
153 11 0.09
154 50 0.41
155 60 0.50
ACGTcount: A:0.45, C:0.22, G:0.09, T:0.24
Consensus pattern (152 bp):
AAACTTTAAATTCAAAAAGCTCCTCTCACCAGAGGCAACAAACTTTAAATTAAAAAGCTCTATTA
CCAAAGGCAACAAACTTTAAATCCAAAAGCTCATTTAACCAAAGGCAACAAACTTTAAATTAAAA
AGCTCCTTTAACCAAAGGCAAC
Done.