Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168034.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_287, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38833
ACGTcount: A:0.52, C:0.05, G:0.07, T:0.36
Found at i:195 original size:22 final size:23
Alignment explanation
Indices: 170--259 Score: 61
Period size: 22 Copynumber: 4.0 Consensus size: 23
160 ATAAATTTCA
170 AGTTATA-ATAAATTA-TATAATT
1 AGTTATATAT-AATTATTATAATT
*
192 AGTTATATATTATTATTATAATT
1 AGTTATATATAATTATTATAATT
*
215 A-TAATAATCATATATTATT-TGAA-T
1 AGTTAT-AT-ATA-ATTATTAT-AATT
239 A-TTATAT-TAATT-TTATAATT
1 AGTTATATATAATTATTATAATT
259 A
1 A
260 AAAATTAGAA
Statistics
Matches: 56, Mismatches: 4, Indels: 18
0.72 0.05 0.23
Matches are distributed among these distances:
19 4 0.07
20 6 0.11
21 2 0.04
22 14 0.25
23 14 0.25
24 8 0.14
25 8 0.14
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.51
Consensus pattern (23 bp):
AGTTATATATAATTATTATAATT
Found at i:344 original size:16 final size:17
Alignment explanation
Indices: 325--356 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
315 TTATACTTAA
325 ATTATTA-TTAAATAAT
1 ATTATTATTTAAATAAT
341 ATTATTATTTAAATAA
1 ATTATTATTTAAATAA
357 AGATTAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTATTATTTAAATAAT
Found at i:457 original size:19 final size:19
Alignment explanation
Indices: 435--472 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
425 ATTTAATTAA
435 ATTACTAA-TTAATAATAAT
1 ATTACTAAGTT-ATAATAAT
*
454 ATTATTAAGTTATAATAAT
1 ATTACTAAGTTATAATAAT
473 CTCTGTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (19 bp):
ATTACTAAGTTATAATAAT
Found at i:647 original size:26 final size:29
Alignment explanation
Indices: 614--673 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 29
604 AATAATAATT
614 ATAA-TTAAT-ATTATTAATC-A-TAC-TA
1 ATAATTTAATAATTA-TAATCTATTACATA
639 ATAATTTAATAATTATAATCTATTACATA
1 ATAATTTAATAATTATAATCTATTACATA
668 ATAATT
1 ATAATT
674 GCAAATAAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
25 4 0.13
26 10 0.33
27 5 0.17
28 3 0.10
29 8 0.27
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (29 bp):
ATAATTTAATAATTATAATCTATTACATA
Found at i:1280 original size:28 final size:28
Alignment explanation
Indices: 1227--1280 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
1217 TATTATTTAA
* *
1227 TTTATAATTATTTTAATATAAGTTAAGT
1 TTTATAATTATTTTAATAAAACTTAAGT
*
1255 TTTATAATTGCTTTT-ATAAAACTTAA
1 TTTATAATT-ATTTTAATAAAACTTAA
1281 TTAAATTATC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
28 18 0.82
29 4 0.18
ACGTcount: A:0.39, C:0.04, G:0.06, T:0.52
Consensus pattern (28 bp):
TTTATAATTATTTTAATAAAACTTAAGT
Found at i:2376 original size:14 final size:14
Alignment explanation
Indices: 2357--2400 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
2347 AATAAATATT
2357 TATATTTAATTAAA
1 TATATTTAATTAAA
2371 TATATTTAA-T-AA
1 TATATTTAATTAAA
2383 T-TA-TT-ATTAAA
1 TATATTTAATTAAA
2394 TATATTT
1 TATATTT
2401 TTACTAGTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 9
0.74 0.00 0.26
Matches are distributed among these distances:
9 1 0.04
10 3 0.12
11 5 0.19
12 5 0.19
13 3 0.12
14 9 0.35
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TATATTTAATTAAA
Found at i:2381 original size:27 final size:27
Alignment explanation
Indices: 2340--2440 Score: 68
Period size: 27 Copynumber: 3.7 Consensus size: 27
2330 AATTAATTCA
* *
2340 TAAATATAATAAATATTTATATTTAAT
1 TAAATATATTTAATATTTATATTTAAT
*
2367 TAAATATATTTAATA-AT-TA-TT-AT
1 TAAATATATTTAATATTTATATTTAAT
* *
2390 TAAATATATTTTTACTAGTTATATTTAAT
1 TAAATATA--TTTAATATTTATATTTAAT
2419 ACTATAATATATATTAAT-TTTA
1 --TA-AATATAT-TTAATATTTA
2441 AATATTAAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 17
0.70 0.09 0.21
Matches are distributed among these distances:
23 10 0.18
24 2 0.04
25 8 0.14
26 2 0.04
27 15 0.26
28 2 0.04
29 2 0.04
30 4 0.07
31 6 0.11
32 6 0.11
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (27 bp):
TAAATATATTTAATATTTATATTTAAT
Found at i:3698 original size:24 final size:24
Alignment explanation
Indices: 3628--3703 Score: 66
Period size: 29 Copynumber: 3.0 Consensus size: 24
3618 TATATTATAT
* *
3628 AAATAAT-ATT-TGTTTATAAATT
1 AAATAATAATTATATTTATAAATA
*
3650 TAATAAGTAATTTATAATTACTATAAATA
1 AAATAA-TAA-TTAT-ATT--TATAAATA
3679 AAATAATAATTATATTTATAAATA
1 AAATAATAATTATATTTATAAATA
3703 A
1 A
3704 TTAAAATTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
22 5 0.12
23 1 0.02
24 10 0.23
25 2 0.05
26 4 0.09
27 6 0.14
28 3 0.07
29 12 0.28
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.43
Consensus pattern (24 bp):
AAATAATAATTATATTTATAAATA
Found at i:3793 original size:19 final size:18
Alignment explanation
Indices: 3769--3816 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
3759 GTTTATAATG
* *
3769 TATATAATTTAATAAATAT
1 TATATAATAT-ATAAATAC
3788 TATATAATATATAAATAC
1 TATATAATATATAAATAC
3806 TATAATAATAT
1 TAT-ATAATAT
3817 TATATTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 10 0.38
19 16 0.62
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (18 bp):
TATATAATATATAAATAC
Found at i:3880 original size:23 final size:24
Alignment explanation
Indices: 3854--3907 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 24
3844 TTAATTATAT
3854 AAATAAAT-TAGATT-TAATATTTA
1 AAATAAATATAGATTATAATA-TTA
* *
3877 AAATTAATATATATTATAATATTA
1 AAATAAATATAGATTATAATATTA
3901 AATATAA
1 AA-ATAA
3908 CTAGTAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
23 7 0.28
24 10 0.40
25 8 0.32
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.43
Consensus pattern (24 bp):
AAATAAATATAGATTATAATATTA
Found at i:3932 original size:25 final size:24
Alignment explanation
Indices: 3895--3955 Score: 59
Period size: 25 Copynumber: 2.5 Consensus size: 24
3885 ATATATTATA
3895 ATATTAAATATAACTAGTAAAAAT
1 ATATTAAATATAACTAGTAAAAAT
* * *
3919 ATATTTAATAATAATTATTAAAATAT
1 ATATTAAAT-ATAACTAGTAAAA-AT
* *
3945 TTGTTAAATAT
1 ATATTAAATAT
3956 TTTGAAAATT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
24 8 0.28
25 13 0.45
26 8 0.28
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (24 bp):
ATATTAAATATAACTAGTAAAAAT
Found at i:5013 original size:25 final size:26
Alignment explanation
Indices: 4966--5015 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
4956 GACTACTTAA
4966 TTATAATAAATAGTTATAACATATAT
1 TTATAATAAATAGTTATAACATATAT
4992 TTATAAGT-AATA-TTATAACATATA
1 TTATAA-TAAATAGTTATAACATATA
5016 AATATTGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 12 0.52
26 10 0.43
27 1 0.04
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (26 bp):
TTATAATAAATAGTTATAACATATAT
Found at i:5175 original size:16 final size:17
Alignment explanation
Indices: 5144--5186 Score: 63
Period size: 16 Copynumber: 2.6 Consensus size: 17
5134 CTAATATTTA
5144 ATTA-TATAATTATAAT
1 ATTACTATAATTATAAT
5160 ATTACTATAATT-TAAT
1 ATTACTATAATTATAAT
*
5176 ATAACTATAAT
1 ATTACTATAAT
5187 GTATTATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 18 0.72
17 7 0.28
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.47
Consensus pattern (17 bp):
ATTACTATAATTATAAT
Found at i:5637 original size:13 final size:13
Alignment explanation
Indices: 5607--5657 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
5597 TTATATCGAG
*
5607 TTATATAATATAAT
1 TTATATTATAT-AT
5621 TTATATTATATAT
1 TTATATTATATAT
*
5634 TTATAATT-CATAT
1 TTAT-ATTATATAT
*
5647 TTATTTTATAT
1 TTATATTATAT
5658 TAAATAGTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
12 2 0.06
13 16 0.52
14 13 0.42
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (13 bp):
TTATATTATATAT
Found at i:5640 original size:20 final size:18
Alignment explanation
Indices: 5615--5656 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 18
5605 AGTTATATAA
*
5615 TATAATTTATATTATATATT
1 TATAATTCATATT-TAT-TT
5635 TATAATTCATATTTATTT
1 TATAATTCATATTTATTT
5653 TATA
1 TATA
5657 TTAAATAGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.29
19 3 0.14
20 12 0.57
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (18 bp):
TATAATTCATATTTATTT
Found at i:6756 original size:3 final size:3
Alignment explanation
Indices: 6748--6775 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
6738 TATATATTAA
6748 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
6776 TATTATTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:6815 original size:24 final size:25
Alignment explanation
Indices: 6783--6838 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
6773 ATATATTATT
* *
6783 ATTATTATTATTAA-TATAAT-TTAA
1 ATTAATATTATTAATTA-AATCCTAA
6807 ATTAATATTATTAATTAAATCCTAA
1 ATTAATATTATTAATTAAATCCTAA
6832 ATTAATA
1 ATTAATA
6839 AGTAAAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 16 0.57
25 12 0.43
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (25 bp):
ATTAATATTATTAATTAAATCCTAA
Found at i:7028 original size:22 final size:23
Alignment explanation
Indices: 7003--7092 Score: 61
Period size: 22 Copynumber: 4.0 Consensus size: 23
6993 ATAAATTTCA
7003 AGTTATA-ATAAATTA-TATAATT
1 AGTTATATAT-AATTATTATAATT
*
7025 AGTTATATATTATTATTATAATT
1 AGTTATATATAATTATTATAATT
*
7048 A-TAATAATCATATATTATT-TGAA-T
1 AGTTAT-AT-ATA-ATTATTAT-AATT
7072 A-TTATAT-TAATT-TTATAATT
1 AGTTATATATAATTATTATAATT
7092 A
1 A
7093 AAAATTAGAA
Statistics
Matches: 56, Mismatches: 4, Indels: 18
0.72 0.05 0.23
Matches are distributed among these distances:
19 4 0.07
20 6 0.11
21 2 0.04
22 14 0.25
23 14 0.25
24 8 0.14
25 8 0.14
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.51
Consensus pattern (23 bp):
AGTTATATATAATTATTATAATT
Found at i:7177 original size:16 final size:17
Alignment explanation
Indices: 7158--7189 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7148 TTATACTTAA
7158 ATTATTA-TTAAATAAT
1 ATTATTATTTAAATAAT
7174 ATTATTATTTAAATAA
1 ATTATTATTTAAATAA
7190 AGATTAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTATTATTTAAATAAT
Found at i:7291 original size:19 final size:19
Alignment explanation
Indices: 7269--7306 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
7259 ATTTAATTAA
7269 ATTACTAA-TTAATAATAAT
1 ATTACTAAGTT-ATAATAAT
*
7288 ATTATTAAGTTATAATAAT
1 ATTACTAAGTTATAATAAT
7307 CTCTGTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (19 bp):
ATTACTAAGTTATAATAAT
Found at i:7728 original size:17 final size:17
Alignment explanation
Indices: 7703--7735 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7693 TTATAAGGAT
7703 TTTAATTTTAATATTAA
1 TTTAATTTTAATATTAA
*
7720 TTTATTTTTAATATTA
1 TTTAATTTTAATATTA
7736 TTAAATAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTAATTTTAATATTAA
Found at i:9223 original size:14 final size:14
Alignment explanation
Indices: 9204--9247 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
9194 AATAAATATT
9204 TATATTTAATTAAA
1 TATATTTAATTAAA
9218 TATATTTAA-T-AA
1 TATATTTAATTAAA
9230 T-TA-TT-ATTAAA
1 TATATTTAATTAAA
9241 TATATTT
1 TATATTT
9248 TTACTAGTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 9
0.74 0.00 0.26
Matches are distributed among these distances:
9 1 0.04
10 3 0.12
11 5 0.19
12 5 0.19
13 3 0.12
14 9 0.35
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TATATTTAATTAAA
Found at i:9228 original size:27 final size:27
Alignment explanation
Indices: 9187--9287 Score: 68
Period size: 27 Copynumber: 3.7 Consensus size: 27
9177 AATTAATTCA
* *
9187 TAAATATAATAAATATTTATATTTAAT
1 TAAATATATTTAATATTTATATTTAAT
*
9214 TAAATATATTTAATA-AT-TA-TT-AT
1 TAAATATATTTAATATTTATATTTAAT
* *
9237 TAAATATATTTTTACTAGTTATATTTAAT
1 TAAATATA--TTTAATATTTATATTTAAT
9266 ACTATAATATATATTAAT-TTTA
1 --TA-AATATAT-TTAATATTTA
9288 AATATTAAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 17
0.70 0.09 0.21
Matches are distributed among these distances:
23 10 0.18
24 2 0.04
25 8 0.14
26 2 0.04
27 15 0.26
28 2 0.04
29 2 0.04
30 4 0.07
31 6 0.11
32 6 0.11
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (27 bp):
TAAATATATTTAATATTTATATTTAAT
Found at i:10545 original size:24 final size:24
Alignment explanation
Indices: 10475--10550 Score: 66
Period size: 29 Copynumber: 3.0 Consensus size: 24
10465 TATATTATAT
* *
10475 AAATAAT-ATT-TGTTTATAAATT
1 AAATAATAATTATATTTATAAATA
*
10497 TAATAAGTAATTTATAATTACTATAAATA
1 AAATAA-TAA-TTAT-ATT--TATAAATA
10526 AAATAATAATTATATTTATAAATA
1 AAATAATAATTATATTTATAAATA
10550 A
1 A
10551 TTAAAATTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
22 5 0.12
23 1 0.02
24 10 0.23
25 2 0.05
26 4 0.09
27 6 0.14
28 3 0.07
29 12 0.28
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.43
Consensus pattern (24 bp):
AAATAATAATTATATTTATAAATA
Found at i:10640 original size:19 final size:18
Alignment explanation
Indices: 10616--10663 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
10606 GTTTATAATG
* *
10616 TATATAATTTAATAAATAT
1 TATATAATAT-ATAAATAC
10635 TATATAATATATAAATAC
1 TATATAATATATAAATAC
10653 TATAATAATAT
1 TAT-ATAATAT
10664 TATATTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 10 0.38
19 16 0.62
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (18 bp):
TATATAATATATAAATAC
Found at i:10739 original size:19 final size:19
Alignment explanation
Indices: 10717--10755 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
10707 ATTAGATTTA
10717 ATATT-TAAAATTAATATAT
1 ATATTATAAAATTAA-ATAT
*
10736 ATATTATAATATTAAATAT
1 ATATTATAAAATTAAATAT
10755 A
1 A
10756 ACTAGTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATATTATAAAATTAAATAT
Found at i:10781 original size:25 final size:24
Alignment explanation
Indices: 10744--10804 Score: 59
Period size: 25 Copynumber: 2.5 Consensus size: 24
10734 ATATATTATA
10744 ATATTAAATATAACTAGTAAAAAT
1 ATATTAAATATAACTAGTAAAAAT
* * *
10768 ATATTTAATAATAATTATTAAAATAT
1 ATATTAAAT-ATAACTAGTAAAA-AT
* *
10794 TTGTTAAATAT
1 ATATTAAATAT
10805 TTTGAAAATT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
24 8 0.28
25 13 0.45
26 8 0.28
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (24 bp):
ATATTAAATATAACTAGTAAAAAT
Found at i:11862 original size:25 final size:26
Alignment explanation
Indices: 11815--11864 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
11805 GACTACTTAA
11815 TTATAATAAATAGTTATAACATATAT
1 TTATAATAAATAGTTATAACATATAT
11841 TTATAAGT-AATA-TTATAACATATA
1 TTATAA-TAAATAGTTATAACATATA
11865 AATATTGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 12 0.52
26 10 0.43
27 1 0.04
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (26 bp):
TTATAATAAATAGTTATAACATATAT
Found at i:12024 original size:16 final size:17
Alignment explanation
Indices: 11993--12035 Score: 63
Period size: 16 Copynumber: 2.6 Consensus size: 17
11983 CTAATATTTA
11993 ATTA-TATAATTATAAT
1 ATTACTATAATTATAAT
12009 ATTACTATAATT-TAAT
1 ATTACTATAATTATAAT
*
12025 ATAACTATAAT
1 ATTACTATAAT
12036 GTATTATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 18 0.72
17 7 0.28
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.47
Consensus pattern (17 bp):
ATTACTATAATTATAAT
Found at i:12484 original size:13 final size:13
Alignment explanation
Indices: 12454--12504 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
12444 TTATATCGAG
*
12454 TTATATAATATAAT
1 TTATATTATAT-AT
12468 TTATATTATATAT
1 TTATATTATATAT
*
12481 TTATAATT-CATAT
1 TTAT-ATTATATAT
*
12494 TTATTTTATAT
1 TTATATTATAT
12505 TAAATAGTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
12 2 0.06
13 16 0.52
14 13 0.42
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (13 bp):
TTATATTATATAT
Found at i:12487 original size:20 final size:18
Alignment explanation
Indices: 12462--12503 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 18
12452 AGTTATATAA
*
12462 TATAATTTATATTATATATT
1 TATAATTCATATT-TAT-TT
12482 TATAATTCATATTTATTT
1 TATAATTCATATTTATTT
12500 TATA
1 TATA
12504 TTAAATAGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.29
19 3 0.14
20 12 0.57
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (18 bp):
TATAATTCATATTTATTT
Found at i:13603 original size:3 final size:3
Alignment explanation
Indices: 13595--13622 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
13585 TATATATTAA
13595 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
13623 TATTATTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:13662 original size:24 final size:25
Alignment explanation
Indices: 13630--13685 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
13620 ATATATTATT
* *
13630 ATTATTATTATTAA-TATAAT-TTAA
1 ATTAATATTATTAATTA-AATCCTAA
13654 ATTAATATTATTAATTAAATCCTAA
1 ATTAATATTATTAATTAAATCCTAA
13679 ATTAATA
1 ATTAATA
13686 AGTAAAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 16 0.57
25 12 0.43
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (25 bp):
ATTAATATTATTAATTAAATCCTAA
Found at i:13875 original size:22 final size:23
Alignment explanation
Indices: 13850--13939 Score: 61
Period size: 22 Copynumber: 4.0 Consensus size: 23
13840 ATAAATTTCA
13850 AGTTATA-ATAAATTA-TATAATT
1 AGTTATATAT-AATTATTATAATT
*
13872 AGTTATATATTATTATTATAATT
1 AGTTATATATAATTATTATAATT
*
13895 A-TAATAATCATATATTATT-TGAA-T
1 AGTTAT-AT-ATA-ATTATTAT-AATT
13919 A-TTATAT-TAATT-TTATAATT
1 AGTTATATATAATTATTATAATT
13939 A
1 A
13940 AAAATTAGAA
Statistics
Matches: 56, Mismatches: 4, Indels: 18
0.72 0.05 0.23
Matches are distributed among these distances:
19 4 0.07
20 6 0.11
21 2 0.04
22 14 0.25
23 14 0.25
24 8 0.14
25 8 0.14
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.51
Consensus pattern (23 bp):
AGTTATATATAATTATTATAATT
Found at i:14024 original size:16 final size:17
Alignment explanation
Indices: 14005--14036 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
13995 TTATACTTAA
14005 ATTATTA-TTAAATAAT
1 ATTATTATTTAAATAAT
14021 ATTATTATTTAAATAA
1 ATTATTATTTAAATAA
14037 AGATTAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTATTATTTAAATAAT
Found at i:14138 original size:19 final size:19
Alignment explanation
Indices: 14116--14153 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
14106 ATTTAATTAA
14116 ATTACTAA-TTAATAATAAT
1 ATTACTAAGTT-ATAATAAT
*
14135 ATTATTAAGTTATAATAAT
1 ATTACTAAGTTATAATAAT
14154 CTCTGTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (19 bp):
ATTACTAAGTTATAATAAT
Found at i:14587 original size:17 final size:17
Alignment explanation
Indices: 14562--14594 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
14552 TTATAAGGAT
14562 TTTAATTTTAATATTAA
1 TTTAATTTTAATATTAA
*
14579 TTTATTTTTAATATTA
1 TTTAATTTTAATATTA
14595 TTAAATAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTAATTTTAATATTAA
Found at i:16085 original size:14 final size:14
Alignment explanation
Indices: 16066--16109 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
16056 AATAAATATT
16066 TATATTTAATTAAA
1 TATATTTAATTAAA
16080 TATATTTAA-T-AA
1 TATATTTAATTAAA
16092 T-TA-TT-ATTAAA
1 TATATTTAATTAAA
16103 TATATTT
1 TATATTT
16110 TTACTAGTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 9
0.74 0.00 0.26
Matches are distributed among these distances:
9 1 0.04
10 3 0.12
11 5 0.19
12 5 0.19
13 3 0.12
14 9 0.35
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TATATTTAATTAAA
Found at i:16090 original size:27 final size:27
Alignment explanation
Indices: 16049--16149 Score: 68
Period size: 27 Copynumber: 3.7 Consensus size: 27
16039 AATTAATTCA
* *
16049 TAAATATAATAAATATTTATATTTAAT
1 TAAATATATTTAATATTTATATTTAAT
*
16076 TAAATATATTTAATA-AT-TA-TT-AT
1 TAAATATATTTAATATTTATATTTAAT
* *
16099 TAAATATATTTTTACTAGTTATATTTAAT
1 TAAATATA--TTTAATATTTATATTTAAT
16128 ACTATAATATATATTAAT-TTTA
1 --TA-AATATAT-TTAATATTTA
16150 AATATTAAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 17
0.70 0.09 0.21
Matches are distributed among these distances:
23 10 0.18
24 2 0.04
25 8 0.14
26 2 0.04
27 15 0.26
28 2 0.04
29 2 0.04
30 4 0.07
31 6 0.11
32 6 0.11
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (27 bp):
TAAATATATTTAATATTTATATTTAAT
Found at i:17414 original size:24 final size:24
Alignment explanation
Indices: 17344--17419 Score: 66
Period size: 29 Copynumber: 3.0 Consensus size: 24
17334 TATATTATAT
* *
17344 AAATAAT-ATT-TGTTTATAAATT
1 AAATAATAATTATATTTATAAATA
*
17366 TAATAAGTAATTTATAATTACTATAAATA
1 AAATAA-TAA-TTAT-ATT--TATAAATA
17395 AAATAATAATTATATTTATAAATA
1 AAATAATAATTATATTTATAAATA
17419 A
1 A
17420 TTAAAATTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
22 5 0.12
23 1 0.02
24 10 0.23
25 2 0.05
26 4 0.09
27 6 0.14
28 3 0.07
29 12 0.28
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.43
Consensus pattern (24 bp):
AAATAATAATTATATTTATAAATA
Found at i:17509 original size:19 final size:18
Alignment explanation
Indices: 17485--17532 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
17475 GTTTATAATG
* *
17485 TATATAATTTAATAAATAT
1 TATATAATAT-ATAAATAC
17504 TATATAATATATAAATAC
1 TATATAATATATAAATAC
17522 TATAATAATAT
1 TAT-ATAATAT
17533 TATATTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 10 0.38
19 16 0.62
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (18 bp):
TATATAATATATAAATAC
Found at i:17609 original size:19 final size:19
Alignment explanation
Indices: 17587--17624 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
17577 TTAGATTTAG
17587 TATT-TAAAATTAATATATA
1 TATTATAAAATTAA-ATATA
*
17606 TATTATAATATTAAATATA
1 TATTATAAAATTAAATATA
17625 ACTAGTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
TATTATAAAATTAAATATA
Found at i:17650 original size:25 final size:24
Alignment explanation
Indices: 17613--17673 Score: 59
Period size: 25 Copynumber: 2.5 Consensus size: 24
17603 ATATATTATA
17613 ATATTAAATATAACTAGTAAAAAT
1 ATATTAAATATAACTAGTAAAAAT
* * *
17637 ATATTTAATAATAATTATTAAAATAT
1 ATATTAAAT-ATAACTAGTAAAA-AT
* *
17663 TTGTTAAATAT
1 ATATTAAATAT
17674 TTTGAAAATT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
24 8 0.28
25 13 0.45
26 8 0.28
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (24 bp):
ATATTAAATATAACTAGTAAAAAT
Found at i:18731 original size:25 final size:26
Alignment explanation
Indices: 18684--18733 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
18674 GACTACTTAA
18684 TTATAATAAATAGTTATAACATATAT
1 TTATAATAAATAGTTATAACATATAT
18710 TTATAAGT-AATA-TTATAACATATA
1 TTATAA-TAAATAGTTATAACATATA
18734 AATATTGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 12 0.52
26 10 0.43
27 1 0.04
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (26 bp):
TTATAATAAATAGTTATAACATATAT
Found at i:18893 original size:16 final size:17
Alignment explanation
Indices: 18862--18904 Score: 63
Period size: 16 Copynumber: 2.6 Consensus size: 17
18852 CTAATATTTA
18862 ATTA-TATAATTATAAT
1 ATTACTATAATTATAAT
18878 ATTACTATAATT-TAAT
1 ATTACTATAATTATAAT
*
18894 ATAACTATAAT
1 ATTACTATAAT
18905 GTATTATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 18 0.72
17 7 0.28
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.47
Consensus pattern (17 bp):
ATTACTATAATTATAAT
Found at i:19353 original size:13 final size:13
Alignment explanation
Indices: 19323--19373 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
19313 TTATATCGAG
*
19323 TTATATAATATAAT
1 TTATATTATAT-AT
19337 TTATATTATATAT
1 TTATATTATATAT
*
19350 TTATAATT-CATAT
1 TTAT-ATTATATAT
*
19363 TTATTTTATAT
1 TTATATTATAT
19374 TAAATAGTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
12 2 0.06
13 16 0.52
14 13 0.42
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (13 bp):
TTATATTATATAT
Found at i:19356 original size:20 final size:18
Alignment explanation
Indices: 19331--19372 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 18
19321 AGTTATATAA
*
19331 TATAATTTATATTATATATT
1 TATAATTCATATT-TAT-TT
19351 TATAATTCATATTTATTT
1 TATAATTCATATTTATTT
19369 TATA
1 TATA
19373 TTAAATAGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.29
19 3 0.14
20 12 0.57
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (18 bp):
TATAATTCATATTTATTT
Found at i:20510 original size:3 final size:3
Alignment explanation
Indices: 20502--20526 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
20492 TATATATTAA
20502 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
20527 TATTATTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:20566 original size:24 final size:25
Alignment explanation
Indices: 20534--20589 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
20524 ATATATTATT
* *
20534 ATTATTATTATTAA-TATAAT-TTAA
1 ATTAATATTATTAATTA-AATCCTAA
20558 ATTAATATTATTAATTAAATCCTAA
1 ATTAATATTATTAATTAAATCCTAA
20583 ATTAATA
1 ATTAATA
20590 AGTAAAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 16 0.57
25 12 0.43
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (25 bp):
ATTAATATTATTAATTAAATCCTAA
Found at i:20779 original size:22 final size:23
Alignment explanation
Indices: 20754--20843 Score: 61
Period size: 22 Copynumber: 4.0 Consensus size: 23
20744 ATAAATTTCA
20754 AGTTATA-ATAAATTA-TATAATT
1 AGTTATATAT-AATTATTATAATT
*
20776 AGTTATATATTATTATTATAATT
1 AGTTATATATAATTATTATAATT
*
20799 A-TAATAATCATATATTATT-TGAA-T
1 AGTTAT-AT-ATA-ATTATTAT-AATT
20823 A-TTATAT-TAATT-TTATAATT
1 AGTTATATATAATTATTATAATT
20843 A
1 A
20844 AAAATTAGAA
Statistics
Matches: 56, Mismatches: 4, Indels: 18
0.72 0.05 0.23
Matches are distributed among these distances:
19 4 0.07
20 6 0.11
21 2 0.04
22 14 0.25
23 14 0.25
24 8 0.14
25 8 0.14
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.51
Consensus pattern (23 bp):
AGTTATATATAATTATTATAATT
Found at i:20928 original size:16 final size:17
Alignment explanation
Indices: 20909--20940 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
20899 TTATACTTAA
20909 ATTATTA-TTAAATAAT
1 ATTATTATTTAAATAAT
20925 ATTATTATTTAAATAA
1 ATTATTATTTAAATAA
20941 AGATTAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTATTATTTAAATAAT
Found at i:21042 original size:19 final size:19
Alignment explanation
Indices: 21020--21057 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
21010 ATTTAATTAA
21020 ATTACTAA-TTAATAATAAT
1 ATTACTAAGTT-ATAATAAT
*
21039 ATTATTAAGTTATAATAAT
1 ATTACTAAGTTATAATAAT
21058 CTCTGTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (19 bp):
ATTACTAAGTTATAATAAT
Found at i:21492 original size:17 final size:17
Alignment explanation
Indices: 21467--21499 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
21457 TTATAAGGAT
21467 TTTAATTTTAATATTAA
1 TTTAATTTTAATATTAA
*
21484 TTTATTTTTAATATTA
1 TTTAATTTTAATATTA
21500 TTAAATAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTAATTTTAATATTAA
Found at i:22990 original size:14 final size:14
Alignment explanation
Indices: 22971--23014 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
22961 AATAAATATT
22971 TATATTTAATTAAA
1 TATATTTAATTAAA
22985 TATATTTAA-T-AA
1 TATATTTAATTAAA
22997 T-TA-TT-ATTAAA
1 TATATTTAATTAAA
23008 TATATTT
1 TATATTT
23015 TTACTAGTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 9
0.74 0.00 0.26
Matches are distributed among these distances:
9 1 0.04
10 3 0.12
11 5 0.19
12 5 0.19
13 3 0.12
14 9 0.35
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TATATTTAATTAAA
Found at i:22995 original size:27 final size:27
Alignment explanation
Indices: 22954--23054 Score: 68
Period size: 27 Copynumber: 3.7 Consensus size: 27
22944 AATTAATTCA
* *
22954 TAAATATAATAAATATTTATATTTAAT
1 TAAATATATTTAATATTTATATTTAAT
*
22981 TAAATATATTTAATA-AT-TA-TT-AT
1 TAAATATATTTAATATTTATATTTAAT
* *
23004 TAAATATATTTTTACTAGTTATATTTAAT
1 TAAATATA--TTTAATATTTATATTTAAT
23033 ACTATAATATATATTAAT-TTTA
1 --TA-AATATAT-TTAATATTTA
23055 AATATTAAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 17
0.70 0.09 0.21
Matches are distributed among these distances:
23 10 0.18
24 2 0.04
25 8 0.14
26 2 0.04
27 15 0.26
28 2 0.04
29 2 0.04
30 4 0.07
31 6 0.11
32 6 0.11
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (27 bp):
TAAATATATTTAATATTTATATTTAAT
Found at i:24320 original size:24 final size:24
Alignment explanation
Indices: 24250--24325 Score: 66
Period size: 29 Copynumber: 3.0 Consensus size: 24
24240 TATATTATAT
* *
24250 AAATAAT-ATT-TGTTTATAAATT
1 AAATAATAATTATATTTATAAATA
*
24272 TAATAAGTAATTTATAATTACTATAAATA
1 AAATAA-TAA-TTAT-ATT--TATAAATA
24301 AAATAATAATTATATTTATAAATA
1 AAATAATAATTATATTTATAAATA
24325 A
1 A
24326 TTAAAATTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
22 5 0.12
23 1 0.02
24 10 0.23
25 2 0.05
26 4 0.09
27 6 0.14
28 3 0.07
29 12 0.28
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.43
Consensus pattern (24 bp):
AAATAATAATTATATTTATAAATA
Found at i:24415 original size:19 final size:18
Alignment explanation
Indices: 24391--24438 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
24381 GTTTATAATG
* *
24391 TATATAATTTAATAAATAT
1 TATATAATAT-ATAAATAC
24410 TATATAATATATAAATAC
1 TATATAATATATAAATAC
24428 TATAATAATAT
1 TAT-ATAATAT
24439 TATATTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 10 0.38
19 16 0.62
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (18 bp):
TATATAATATATAAATAC
Found at i:24514 original size:19 final size:19
Alignment explanation
Indices: 24492--24530 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
24482 ATTAGATTTA
24492 ATATT-TAAAATTAATATAT
1 ATATTATAAAATTAA-ATAT
*
24511 ATATTATAATATTAAATAT
1 ATATTATAAAATTAAATAT
24530 A
1 A
24531 ACTAGTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATATTATAAAATTAAATAT
Found at i:24556 original size:25 final size:24
Alignment explanation
Indices: 24519--24579 Score: 59
Period size: 25 Copynumber: 2.5 Consensus size: 24
24509 ATATATTATA
24519 ATATTAAATATAACTAGTAAAAAT
1 ATATTAAATATAACTAGTAAAAAT
* * *
24543 ATATTTAATAATAATTATTAAAATAT
1 ATATTAAAT-ATAACTAGTAAAA-AT
* *
24569 TTGTTAAATAT
1 ATATTAAATAT
24580 TTTGAAAATT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
24 8 0.28
25 13 0.45
26 8 0.28
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (24 bp):
ATATTAAATATAACTAGTAAAAAT
Found at i:25520 original size:30 final size:30
Alignment explanation
Indices: 25459--25520 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
25449 AGAAAAATAC
**
25459 AAAAAGTAATAAAATTTTCAAAAATGAAGA
1 AAAAAGTAATAAAATTAACAAAAATGAAGA
25489 AAAAAGTAA-AAAATATAACAAACAATG-AGA
1 AAAAAGTAATAAAAT-TAACAAA-AATGAAGA
25519 AA
1 AA
25521 TAAAAGGTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 5 0.18
30 19 0.68
31 4 0.14
ACGTcount: A:0.68, C:0.05, G:0.10, T:0.18
Consensus pattern (30 bp):
AAAAAGTAATAAAATTAACAAAAATGAAGA
Found at i:25569 original size:18 final size:19
Alignment explanation
Indices: 25540--25576 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
25530 TAAAAAAACA
*
25540 AAGATAAAAAAATTAAAAG
1 AAGATAAAAAAATAAAAAG
25559 AAGAT-AAAAAATAAAAAG
1 AAGATAAAAAAATAAAAAG
25577 GGATGACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.76, C:0.00, G:0.11, T:0.14
Consensus pattern (19 bp):
AAGATAAAAAAATAAAAAG
Found at i:26076 original size:18 final size:18
Alignment explanation
Indices: 26049--26084 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
26039 TAAAAAATCA
*
26049 AAGATAAAAAATTAAAAG
1 AAGATAAAAAATAAAAAG
*
26067 AAGATCAAAAATAAAAAG
1 AAGATAAAAAATAAAAAG
26085 GGATGACAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.72, C:0.03, G:0.11, T:0.14
Consensus pattern (18 bp):
AAGATAAAAAATAAAAAG
Found at i:26293 original size:509 final size:502
Alignment explanation
Indices: 25267--26196 Score: 1091
Period size: 508 Copynumber: 1.8 Consensus size: 502
25257 ATTTTTATAC
* ** **
25267 AAAAA-AAAAATTAAAAATAAAAAGTAAAGGGAAAAATAAAAGAAGAGAAAATATTAAAGCAAAA
1 AAAAACAAAAATTAAAAAAAAAAAGTAAAAAGAAAAATAAAAGAAGAGAAAATAAAAAAGCAAAA
* ** *
25331 GGAAAAAGAAAAAAATAAGTACTAAAAAAGAGAAAAAAAATAAAAATAAACAAAAGCACAAAATA
66 AGAAAAAGAAAAAAATAAGTAAAAAAAAAGAAAAAAAAAATAAAAATAAACAAAAGCACAAAATA
25396 AAAAAATAAAAAAGTAAGGAAATGAAAAAATGACGAGTCAAAAGAAAAAAATTAGAAAAATACAA
131 AAAAAATAAAAAAGTAAGGAAATGAAAAAATGACGAGTCAAAAGAAAAAAATTAGAAAAATACAA
*
25461 AAAGTAATAAAATTTTCAAAAATGAAGAAAAAAGTAAAAAATATAACAAACAATGAGAAATAAAA
196 AAAGTAATAAAATTTTCAAAAATGAAGAAAAAAATAAAAAATATAACAAACAATGAGAAATAAAA
25526 GGTATAAAAAAACAAAGATAAAAAAATTAAAAGAAGATAAAAAATAAAAAGGGATGACAAAATAA
261 GGTATAAAAAAACAAAGATAAAAAAATTAAAAGAAGATAAAAAATAAAAAGGGATGACAAAATAA
* * * * * * * * * *
25591 AAAAAATTTGTTAATTAGATAAATTACACGATAAATAAAAACAAATTTCAAGATAAAATACAAGA
326 AAAAAATTAGTTAATAAGAAAAAATAAAAGATAAAGAAAAACAAATTACAAGAGAAAATACAACA
** ** * * * * * ** * *** ** * *
25656 TGATCTTAATTAGATATCTAATTAGTATACATGCACATAACACCTTCCATTTCTAATGAAGTCAA
391 CAAAATAAAGTAGAAAACAAACAAGGATACATGCACATAACAAAATCCATAACTAATGAAATAAA
** * * * * ** ** *
25721 AGTCTCATTCAACAATGTTTTAATATCTATAACATTATAAAATTTTTATACAA
456 AGAAT-ATTCAAAAAAG---TAAGA--TATAACATAATAAAAAATGAAGACAA
* ** **
25774 AAAAACAAAAATTAAAAATAAAAAGTAAAGGGAAAAATAAAAGAAGAGAAAATATTAAAGCAAAA
1 AAAAACAAAAATTAAAAAAAAAAAGTAAAAAGAAAAATAAAAGAAGAGAAAATAAAAAAGCAAAA
* ** *
25839 GGAAAAAGAAAAAAATAAGTACTAAAAAAGAGAAAAAAAATAAAAATAAACAAAAGCACAAAATA
66 AGAAAAAGAAAAAAATAAGTAAAAAAAAAGAAAAAAAAAATAAAAATAAACAAAAGCACAAAATA
25904 GAAAAAATAAAAAAGTAAGGAAATGAAAAAATGACGAGTCAAAAGAAAAAAATTAGAAAAATACA
131 -AAAAAATAAAAAAGTAAGGAAATGAAAAAATGACGAGTCAAAAGAAAAAAATTAGAAAAATACA
25969 AAAAGTAATAAAATTTTCAAAAATGAAGAAAAAAATAAAAAATATAACAAACAATGAGAAATAAA
195 AAAAGTAATAAAATTTTCAAAAATGAAGAAAAAAATAAAAAATATAACAAACAATGAGAAATAAA
* *
26034 AGGTATAAAAAATCAAAGAT-AAAAAATTAAAAGAAGATCAAAAATAAAAAGGGATGACAAAATA
260 AGGTATAAAAAAACAAAGATAAAAAAATTAAAAGAAGATAAAAAATAAAAAGGGATGACAAAATA
*
26098 AAAAAAA-TAG-TAATAAGAAAAAAATAAAAGAAATGAAAGATAAAA-AAATTAACAAAGGGAAA
325 AAAAAAATTAGTTAATAAG-AAAAAATAAAAG--AT-AAAGA-AAAACAAATT-AC-AAGAGAAA
26160 A-AGCTAACACAAAATAAACGTA-AAAACAAAACAAGGA
383 ATA-C-AACACAAAATAAA-GTAGAAAAC-AAACAAGGA
26197 AGTGGAAAAA
Statistics
Matches: 384, Mismatches: 26, Indels: 19
0.90 0.06 0.04
Matches are distributed among these distances:
506 6 0.02
507 15 0.04
508 174 0.45
509 149 0.39
510 9 0.02
511 6 0.02
512 8 0.02
513 10 0.03
514 7 0.02
ACGTcount: A:0.65, C:0.06, G:0.11, T:0.17
Consensus pattern (502 bp):
AAAAACAAAAATTAAAAAAAAAAAGTAAAAAGAAAAATAAAAGAAGAGAAAATAAAAAAGCAAAA
AGAAAAAGAAAAAAATAAGTAAAAAAAAAGAAAAAAAAAATAAAAATAAACAAAAGCACAAAATA
AAAAAATAAAAAAGTAAGGAAATGAAAAAATGACGAGTCAAAAGAAAAAAATTAGAAAAATACAA
AAAGTAATAAAATTTTCAAAAATGAAGAAAAAAATAAAAAATATAACAAACAATGAGAAATAAAA
GGTATAAAAAAACAAAGATAAAAAAATTAAAAGAAGATAAAAAATAAAAAGGGATGACAAAATAA
AAAAAATTAGTTAATAAGAAAAAATAAAAGATAAAGAAAAACAAATTACAAGAGAAAATACAACA
CAAAATAAAGTAGAAAACAAACAAGGATACATGCACATAACAAAATCCATAACTAATGAAATAAA
AGAATATTCAAAAAAGTAAGATATAACATAATAAAAAATGAAGACAA
Found at i:26536 original size:12 final size:12
Alignment explanation
Indices: 26519--26587 Score: 56
Period size: 12 Copynumber: 5.8 Consensus size: 12
26509 ATGAAAATAT
*
26519 AAATAAAGAAAG
1 AAATAAAGAAAA
26531 AAATAAA-AAGAA
1 AAATAAAGAA-AA
*
26543 AAATAAA-AATA
1 AAATAAAGAAAA
26554 AAAT-AAGAAAA
1 AAATAAAGAAAA
26565 AAATTAAAGCAAAA
1 AAA-TAAAG-AAAA
26579 GAAA-AAAGA
1 -AAATAAAGA
26588 TAAAGAAAGC
Statistics
Matches: 48, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
10 2 0.04
11 13 0.27
12 19 0.40
13 7 0.15
14 4 0.08
15 3 0.06
ACGTcount: A:0.78, C:0.01, G:0.10, T:0.10
Consensus pattern (12 bp):
AAATAAAGAAAA
Found at i:28026 original size:20 final size:20
Alignment explanation
Indices: 28003--28044 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
27993 AAATGAAAAT
*
28003 AATGAATGAAAAA-TTAAGAA
1 AATGAAT-AAAAAGTAAAGAA
*
28023 AATGCATAAAAAGTAAAGAA
1 AATGAATAAAAAGTAAAGAA
28043 AA
1 AA
28045 CAAAAAGTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.67, C:0.02, G:0.14, T:0.17
Consensus pattern (20 bp):
AATGAATAAAAAGTAAAGAA
Found at i:28051 original size:16 final size:16
Alignment explanation
Indices: 28030--28064 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
28020 GAAAATGCAT
28030 AAAAAG-TAAAGAAAAC
1 AAAAAGTTAAA-AAAAC
28046 AAAAAGTTAAAAAAAC
1 AAAAAGTTAAAAAAAC
28062 AAA
1 AAA
28065 GGAAAAGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.77, C:0.06, G:0.09, T:0.09
Consensus pattern (16 bp):
AAAAAGTTAAAAAAAC
Found at i:28214 original size:20 final size:20
Alignment explanation
Indices: 28177--28214 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
28167 AAATATTTTG
*
28177 ATTTGAATTTATTGATTTAA
1 ATTTGAATTTATTAATTTAA
28197 ATTTAGAATTT-TTAATTT
1 ATTT-GAATTTATTAATTT
28215 TTAAATCGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (20 bp):
ATTTGAATTTATTAATTTAA
Found at i:29157 original size:12 final size:11
Alignment explanation
Indices: 29130--29164 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
29120 AAAAATACTT
*
29130 TAAAATATAAA
1 TAAAAAATAAA
29141 TAAAAAATAAA
1 TAAAAAATAAA
29152 TGAAAAAATAAA
1 T-AAAAAATAAA
29164 T
1 T
29165 TAAGAGAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (11 bp):
TAAAAAATAAA
Found at i:29415 original size:44 final size:43
Alignment explanation
Indices: 29331--29416 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
29321 GGAAGATATA
*
29331 AAAAATCATAGATAAAAAATAAAATAAAAACAAAAGGTAAGAT
1 AAAAATCATAGATAAAAAATAAAATAAAAACAAAAAGTAAGAT
*
29374 AAAAATCATA-A-AATAAAATAAAATAAAAAATGAAAAAGTAAGA
1 AAAAATCATAGATAA-AAAATAAAAT-AAAAA-CAAAAAGTAAGA
29417 AAATAAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
41 2 0.05
42 11 0.29
43 15 0.39
44 10 0.26
ACGTcount: A:0.72, C:0.03, G:0.08, T:0.16
Consensus pattern (43 bp):
AAAAATCATAGATAAAAAATAAAATAAAAACAAAAAGTAAGAT
Found at i:29915 original size:18 final size:18
Alignment explanation
Indices: 29887--29944 Score: 59
Period size: 17 Copynumber: 3.2 Consensus size: 18
29877 TACAAAAGTT
29887 AAAAATAAAAAATAAAAGG
1 AAAAAT-AAAAATAAAAGG
29906 AAAAAT-AAAATAAAA-G
1 AAAAATAAAAATAAAAGG
*
29922 -AAAATAATAAAGCAAAAGG
1 AAAAATAA-AAA-TAAAAGG
29941 AAAA
1 AAAA
29945 TGATAAAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
15 5 0.15
16 2 0.06
17 12 0.36
18 4 0.12
19 7 0.21
20 3 0.09
ACGTcount: A:0.78, C:0.02, G:0.10, T:0.10
Consensus pattern (18 bp):
AAAAATAAAAATAAAAGG
Found at i:29921 original size:37 final size:36
Alignment explanation
Indices: 29888--29955 Score: 95
Period size: 35 Copynumber: 1.9 Consensus size: 36
29878 ACAAAAGTTA
*
29888 AAAATAA-AAAATAAAAGGAAAA-ATAAAATAAAAG
1 AAAATAATAAAACAAAAGGAAAAGATAAAATAAAAG
*
29922 AAAATAATAAAGCAAAAGGAAAATGATAAAATAA
1 AAAATAATAAAACAAAAGGAAAA-GATAAAATAA
29956 GCACTAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 7 0.24
35 13 0.45
37 9 0.31
ACGTcount: A:0.75, C:0.01, G:0.10, T:0.13
Consensus pattern (36 bp):
AAAATAATAAAACAAAAGGAAAAGATAAAATAAAAG
Found at i:30037 original size:16 final size:17
Alignment explanation
Indices: 30016--30050 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
30006 ATAACGAGTC
30016 AAAAGAAAAAT-TTAAA
1 AAAAGAAAAATGTTAAA
*
30032 AAAAGAAAATTGTTAAA
1 AAAAGAAAAATGTTAAA
30049 AA
1 AA
30051 TGGAAAAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.20
Consensus pattern (17 bp):
AAAAGAAAAATGTTAAA
Found at i:31137 original size:18 final size:18
Alignment explanation
Indices: 31106--31143 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
31096 AAATTTTTAT
31106 AAAAAAAAGCAAAAA-AA
1 AAAAAAAAGCAAAAATAA
*
31123 AAAATAAAAGGAAAAATAA
1 AAAA-AAAAGCAAAAATAA
31142 AA
1 AA
31144 TAAGAGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
18 10 0.56
19 4 0.22
ACGTcount: A:0.84, C:0.03, G:0.08, T:0.05
Consensus pattern (18 bp):
AAAAAAAAGCAAAAATAA
Found at i:31639 original size:18 final size:18
Alignment explanation
Indices: 31618--31689 Score: 58
Period size: 18 Copynumber: 3.9 Consensus size: 18
31608 ATAACGAGTC
31618 AAAAGAAAAAAAATTAGA
1 AAAAGAAAAAAAATTAGA
* *
31636 AAAATAAAAAAATTTCA-A
1 AAAAGAAAAAAAATT-AGA
* * *
31654 AAATGAAGAAAAAATGACA
1 AAAAGAA-AAAAAATTAGA
31673 AAATAG-AAAAAAATTAG
1 AAA-AGAAAAAAAATTAG
31690 TTTATAAAAT
Statistics
Matches: 41, Mismatches: 9, Indels: 8
0.71 0.16 0.14
Matches are distributed among these distances:
18 28 0.68
19 12 0.29
20 1 0.02
ACGTcount: A:0.72, C:0.03, G:0.10, T:0.15
Consensus pattern (18 bp):
AAAAGAAAAAAAATTAGA
Found at i:31644 original size:17 final size:18
Alignment explanation
Indices: 31624--31689 Score: 64
Period size: 19 Copynumber: 3.6 Consensus size: 18
31614 AGTCAAAAGA
31624 AAAAAAATTAGAAAAAT-
1 AAAAAAATTAGAAAAATG
**
31641 AAAAAAATTTCAAAAATG
1 AAAAAAATTAGAAAAATG
*
31659 AAGAAAAAAT-GACAAAATAG
1 AA-AAAAATTAGA-AAAAT-G
31679 AAAAAAATTAG
1 AAAAAAATTAG
31690 TTTATAAAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
17 15 0.38
18 3 0.08
19 17 0.44
20 4 0.10
ACGTcount: A:0.71, C:0.03, G:0.09, T:0.17
Consensus pattern (18 bp):
AAAAAAATTAGAAAAATG
Found at i:32117 original size:8 final size:8
Alignment explanation
Indices: 32091--32167 Score: 59
Period size: 8 Copynumber: 9.4 Consensus size: 8
32081 CAACAATGAT
32091 AAAATAAA
1 AAAATAAA
*
32099 AAAA-AAC
1 AAAATAAA
32106 AAAATAAA
1 AAAATAAA
32114 AAAAT-AA
1 AAAATAAA
*
32121 AAGATGAAA
1 AAAAT-AAA
*
32130 AAATACAATA
1 AAA-ATAA-A
32140 AAAATATAA
1 AAAATA-AA
* *
32149 AAAGTAAG
1 AAAATAAA
32157 AAAATAAA
1 AAAATAAA
32165 AAA
1 AAA
32168 GACAAAAATT
Statistics
Matches: 53, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
7 12 0.23
8 21 0.40
9 14 0.26
10 6 0.11
ACGTcount: A:0.79, C:0.03, G:0.05, T:0.13
Consensus pattern (8 bp):
AAAATAAA
Found at i:32120 original size:28 final size:28
Alignment explanation
Indices: 32089--32150 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
32079 ACCAACAATG
*
32089 ATAAAATAAAAAAAAACAAAATAAAAAA
1 ATAAAAGAAAAAAAAACAAAATAAAAAA
** * * *
32117 ATAAAAGATGAAAAAATACAATAAAAAT
1 ATAAAAGAAAAAAAAACAAAATAAAAAA
32145 ATAAAA
1 ATAAAA
32151 AGTAAGAAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (28 bp):
ATAAAAGAAAAAAAAACAAAATAAAAAA
Found at i:32175 original size:43 final size:42
Alignment explanation
Indices: 32106--32186 Score: 101
Period size: 43 Copynumber: 1.9 Consensus size: 42
32096 AAAAAAAAAC
*
32106 AAAATAAAAAAATAAAAGATGAAAAAATACAATAAAAATATA
1 AAAATAAAAAAATAAAAGAAGAAAAAATACAATAAAAATATA
* **
32148 AAAAGTAAGAAAATAAAA-AAGACAAAAATTGAATAAAAA
1 AAAA-TAAAAAAATAAAAGAAGA-AAAAATACAATAAAAA
32187 CTTCAAAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
42 7 0.21
43 26 0.79
ACGTcount: A:0.75, C:0.02, G:0.07, T:0.15
Consensus pattern (42 bp):
AAAATAAAAAAATAAAAGAAGAAAAAATACAATAAAAATATA
Found at i:32584 original size:13 final size:13
Alignment explanation
Indices: 32549--32591 Score: 63
Period size: 12 Copynumber: 3.5 Consensus size: 13
32539 GAAAATTTAT
*
32549 AAAATAGA-ACAA
1 AAAATAGACAAAA
32561 AAAATAG-CAAAA
1 AAAATAGACAAAA
32573 AAAATAGACAAAA
1 AAAATAGACAAAA
32586 AAAATA
1 AAAATA
32592 AGAAAATGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
12 17 0.61
13 11 0.39
ACGTcount: A:0.77, C:0.07, G:0.07, T:0.09
Consensus pattern (13 bp):
AAAATAGACAAAA
Found at i:32597 original size:24 final size:23
Alignment explanation
Indices: 32549--32597 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 23
32539 GAAAATTTAT
*
32549 AAAATAGAACAAAAAATAGCAAAA
1 AAAATAGAAAAAAAAATAG-AAAA
32573 AAAATAGACAAAAAAAATAAGAAAA
1 AAAATAGA-AAAAAAAAT-AGAAAA
32598 TGAAAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 8 0.36
25 12 0.55
26 2 0.09
ACGTcount: A:0.78, C:0.06, G:0.08, T:0.08
Consensus pattern (23 bp):
AAAATAGAAAAAAAAATAGAAAA
Found at i:32603 original size:16 final size:15
Alignment explanation
Indices: 32584--32613 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
32574 AAATAGACAA
32584 AAAAAATAAGAAAATG
1 AAAAAATAA-AAAATG
32600 AAAAAATAAAAAAT
1 AAAAAATAAAAAAT
32614 TTTGAACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (15 bp):
AAAAAATAAAAAATG
Found at i:32668 original size:17 final size:18
Alignment explanation
Indices: 32638--32707 Score: 56
Period size: 17 Copynumber: 3.9 Consensus size: 18
32628 AAATATTTAA
*
32638 AAATAT-AAATAAAAAAT
1 AAATATAAAAGAAAAAAT
* *
32655 AAAT-TAAGAGAAAATAT
1 AAATATAAAAGAAAAAAT
* *
32672 TAATATAAAAGAAAAATT
1 AAATATAAAAGAAAAAAT
32690 AAATA-AAATACGAAAAAA
1 AAATATAAA-A-GAAAAAA
32708 GGAAGAAATA
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
16 1 0.03
17 18 0.45
18 15 0.38
19 6 0.15
ACGTcount: A:0.71, C:0.01, G:0.06, T:0.21
Consensus pattern (18 bp):
AAATATAAAAGAAAAAAT
Found at i:32668 original size:28 final size:29
Alignment explanation
Indices: 32637--32699 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 29
32627 AAAATATTTA
32637 AAAATA-TAA-ATAAAA-AATAAATTAAGAG
1 AAAATATTAATATAAAAGAA-AAATTAA-AG
*
32665 AAAATATTAATATAAAAGAAAAATTAAAT
1 AAAATATTAATATAAAAGAAAAATTAAAG
32694 AAAATA
1 AAAATA
32700 CGAAAAAAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
28 6 0.19
29 10 0.32
30 13 0.42
31 2 0.06
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (29 bp):
AAAATATTAATATAAAAGAAAAATTAAAG
Found at i:32686 original size:18 final size:16
Alignment explanation
Indices: 32638--32697 Score: 57
Period size: 18 Copynumber: 3.5 Consensus size: 16
32628 AAATATTTAA
* *
32638 AAATATAAATAAAAAAT
1 AAATA-AAAGAAAAATT
*
32655 AAATTAAGAGAAAATATT
1 AAA-TAAAAGAAAA-ATT
32673 AATATAAAAGAAAAATT
1 AA-ATAAAAGAAAAATT
32690 AAATAAAA
1 AAATAAAA
32698 TACGAAAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
16 6 0.17
17 14 0.39
18 15 0.42
19 1 0.03
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAGAAAAATT
Found at i:33144 original size:18 final size:19
Alignment explanation
Indices: 33111--33180 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 19
33101 ATAAAGTTCG
*
33111 AGAAAAAATGAGAAAAAGA
1 AGAAAAAATGAAAAAAAGA
*
33130 AGAAAAAATAAAAAATGAAGA
1 AGAAAAAATGAAAAA--AAGA
* *
33151 GGCAAAAATATGAAATAAAAAA
1 AG-AAAAA-ATGAAA-AAAAGA
33173 AGAAAAAA
1 AGAAAAAA
33181 ATTTATAGAA
Statistics
Matches: 40, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
19 13 0.32
20 1 0.03
21 10 0.25
22 9 0.22
23 5 0.12
24 2 0.05
ACGTcount: A:0.74, C:0.01, G:0.16, T:0.09
Consensus pattern (19 bp):
AGAAAAAATGAAAAAAAGA
Found at i:33889 original size:19 final size:20
Alignment explanation
Indices: 33839--33891 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 20
33829 AAAAGATTCA
33839 AAATA-AAATAAAAATTTTG
1 AAATATAAATAAAAATTTTG
* * *
33858 AACTTTATA-AAAAATTTT-
1 AAATATAAATAAAAATTTTG
33876 AAATATAAATAAAAAT
1 AAATATAAATAAAAAT
33892 AAATGGAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
18 6 0.23
19 18 0.69
20 2 0.08
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (20 bp):
AAATATAAATAAAAATTTTG
Found at i:34127 original size:22 final size:22
Alignment explanation
Indices: 34081--34127 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
34071 AATCAAAGGT
* *
34081 AAAAATAAAATAAAAGTTAATG
1 AAAAATAAAATAAAAGTCAAAG
34103 AAAAATATAAATAAAAG-CAAAG
1 AAAAATA-AAATAAAAGTCAAAG
34125 AAA
1 AAA
34128 GTGCACAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 13 0.59
23 9 0.41
ACGTcount: A:0.72, C:0.02, G:0.09, T:0.17
Consensus pattern (22 bp):
AAAAATAAAATAAAAGTCAAAG
Found at i:34299 original size:17 final size:19
Alignment explanation
Indices: 34260--34299 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 19
34250 AAAAGAAATA
34260 TAAAAAATTTAAAACAACG
1 TAAAAAATTTAAAACAACG
34279 -AAAAAA-TTAAAACAA-G
1 TAAAAAATTTAAAACAACG
34295 TAAAA
1 TAAAA
34300 CTTGAAAAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
16 1 0.05
17 13 0.65
18 6 0.30
ACGTcount: A:0.70, C:0.07, G:0.05, T:0.17
Consensus pattern (19 bp):
TAAAAAATTTAAAACAACG
Found at i:34677 original size:17 final size:17
Alignment explanation
Indices: 34645--34695 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 17
34635 CAAATACAAG
34645 AAAAAGATATAGAAAATC
1 AAAAAGATATA-AAAATC
* *
34663 AAAAAAATATAAAAAGAC
1 AAAAAGATATAAAAA-TC
34681 AAAAAGA-ATAAAAAT
1 AAAAAGATATAAAAAT
34696 TTGAAATACA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 11 0.39
18 17 0.61
ACGTcount: A:0.75, C:0.04, G:0.08, T:0.14
Consensus pattern (17 bp):
AAAAAGATATAAAAATC
Found at i:34682 original size:105 final size:107
Alignment explanation
Indices: 34542--34772 Score: 384
Period size: 107 Copynumber: 2.2 Consensus size: 107
34532 GAAAAAAAAT
* *
34542 GAAAAAG-TA-AGAAAAT-AAAAAAATATAAAAAGACAAAATGAAT-AAAATTTGAAATA-TAAA
1 GAAAAAGATATAGAAAATCAAAAAAATATAAAAAGACAAAAAGAATAAAAATTTGAAATACAAAA
34602 TAGAAAAAA-TTTTAGTTTAAAGAAAAAAAATAACAAATACAA
66 TAGAAAAAACTTTTAGTTTAAAG-AAAAAAATAACAAATACAA
34644 GAAAAAGATATAGAAAATCAAAAAAATATAAAAAGACAAAAAGAATAAAAATTTGAAATACAAAA
1 GAAAAAGATATAGAAAATCAAAAAAATATAAAAAGACAAAAAGAATAAAAATTTGAAATACAAAA
34709 TAGAAAAAACTTTTAGTTTAAAGAAAAAAATAACAAATACAA
66 TAGAAAAAACTTTTAGTTTAAAGAAAAAAATAACAAATACAA
*
34751 GAAAAAGATATAAAAAATCAAA
1 GAAAAAGATATAGAAAATCAAA
34773 GATAAAAAAT
Statistics
Matches: 120, Mismatches: 3, Indels: 7
0.92 0.02 0.05
Matches are distributed among these distances:
102 7 0.06
103 2 0.02
104 7 0.06
105 26 0.22
106 13 0.11
107 52 0.43
108 13 0.11
ACGTcount: A:0.68, C:0.04, G:0.09, T:0.19
Consensus pattern (107 bp):
GAAAAAGATATAGAAAATCAAAAAAATATAAAAAGACAAAAAGAATAAAAATTTGAAATACAAAA
TAGAAAAAACTTTTAGTTTAAAGAAAAAAATAACAAATACAA
Found at i:34768 original size:22 final size:20
Alignment explanation
Indices: 34729--34786 Score: 64
Period size: 22 Copynumber: 2.8 Consensus size: 20
34719 TTTTAGTTTA
*
34729 AAGAAAAAAATAACAAATAC
1 AAGAAAAAAATAAAAAATAC
34749 AAGAAAAAGATATAAAAAAT-C
1 AAGAAAAA-A-ATAAAAAATAC
34770 AAAGATAAAAAATAAAA
1 -AAGA-AAAAAATAAAA
34787 TAAAAGTTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
20 8 0.24
21 8 0.24
22 13 0.39
23 4 0.12
ACGTcount: A:0.76, C:0.05, G:0.07, T:0.12
Consensus pattern (20 bp):
AAGAAAAAAATAAAAAATAC
Found at i:35064 original size:27 final size:29
Alignment explanation
Indices: 35034--35095 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 29
35024 GAAAAATTAT
*
35034 AAAATAGAATA-AAAAT-AGCAAAAA-CAA
1 AAAATAGAAAACAAAATGAG-AAAAACCAA
35061 AAAAT-GAAAACAAAATGAGAAAAACCAA
1 AAAATAGAAAACAAAATGAGAAAAACCAA
35089 AAGAATA
1 AA-AATA
35096 ATAGATTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
26 4 0.14
27 15 0.52
28 7 0.24
29 3 0.10
ACGTcount: A:0.73, C:0.08, G:0.10, T:0.10
Consensus pattern (29 bp):
AAAATAGAAAACAAAATGAGAAAAACCAA
Found at i:36385 original size:19 final size:19
Alignment explanation
Indices: 36353--36391 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
36343 AAATTTTTAT
36353 AAAAAAAAGCAAAAA-AAA
1 AAAAAAAAGCAAAAATAAA
*
36371 AAAATAAAAGGAAAAATAAA
1 AAAA-AAAAGCAAAAATAAA
36391 A
1 A
36392 TAAGAGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 10 0.56
20 4 0.22
ACGTcount: A:0.85, C:0.03, G:0.08, T:0.05
Consensus pattern (19 bp):
AAAAAAAAGCAAAAATAAA
Found at i:36391 original size:35 final size:36
Alignment explanation
Indices: 36351--36489 Score: 106
Period size: 35 Copynumber: 3.8 Consensus size: 36
36341 TAAAATTTTT
36351 ATAAAAAAAAGCAAAAAA-AAAAAATAAAAGGAAAA
1 ATAAAAAAAAGCAAAAAAGAAAAAATAAAAGGAAAA
* *** **
36386 AT-AAAATAAG-AGAAAAATTTAAAGCAAAAGGAAAA
1 ATAAAAAAAAGCA-AAAAAGAAAAAATAAAAGGAAAA
* * **
36421 AGAAAAAAAAGTACTAAAAAAGAGAAAA-AAAATTAAAA
1 ATAAAAAAAAG--C-AAAAAAGAAAAAATAAAAGGAAAA
*
36459 ATAAACAAAAGCAAAAATAGAAAAAATAAAA
1 ATAAAAAAAAGCAAAAA-AGAAAAAATAAAA
36490 AAAGTAAGGA
Statistics
Matches: 79, Mismatches: 16, Indels: 16
0.71 0.14 0.14
Matches are distributed among these distances:
33 1 0.01
34 12 0.15
35 21 0.27
36 15 0.19
37 4 0.05
38 17 0.22
39 8 0.10
40 1 0.01
ACGTcount: A:0.76, C:0.04, G:0.10, T:0.10
Consensus pattern (36 bp):
ATAAAAAAAAGCAAAAAAGAAAAAATAAAAGGAAAA
Found at i:36400 original size:16 final size:17
Alignment explanation
Indices: 36365--36431 Score: 57
Period size: 17 Copynumber: 3.9 Consensus size: 17
36355 AAAAAAGCAA
*
36365 AAAAAAAAAATAAAAGG
1 AAAAATAAAATAAAAGG
*
36382 AAAAATAAAATAAGA-G
1 AAAAATAAAATAAAAGG
**
36398 AAAAATTTAAAGCAAAAGG
1 AAAAA--TAAAATAAAAGG
*
36417 AAAAAGAAAA-AAAAG
1 AAAAATAAAATAAAAG
36432 TACTAAAAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
16 11 0.28
17 16 0.40
18 7 0.17
19 6 0.15
ACGTcount: A:0.76, C:0.01, G:0.13, T:0.09
Consensus pattern (17 bp):
AAAAATAAAATAAAAGG
Found at i:36463 original size:25 final size:24
Alignment explanation
Indices: 36435--36512 Score: 66
Period size: 25 Copynumber: 3.1 Consensus size: 24
36425 AAAAAAGTAC
**
36435 TAAAAAAGAGAAAAAAAATTAAAAA
1 TAAAAAA-AGAAAAAAAAGAAAAAA
* *
36460 TAAACAAAAGCAAAAATAGAAAAAA
1 TAAA-AAAAGAAAAAAAAGAAAAAA
** *
36485 TAAAAAAAGTAAGGAAATGAAAAAA
1 TAAAAAAAG-AAAAAAAAGAAAAAA
36510 TAA
1 TAA
36513 TGAGTCAAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
24 5 0.12
25 34 0.81
26 3 0.07
ACGTcount: A:0.76, C:0.03, G:0.10, T:0.12
Consensus pattern (24 bp):
TAAAAAAAGAAAAAAAAGAAAAAA
Found at i:36878 original size:17 final size:16
Alignment explanation
Indices: 36858--36918 Score: 59
Period size: 18 Copynumber: 3.5 Consensus size: 16
36848 CGAGTCAAAG
36858 AAAAAATTAGAAAAATA
1 AAAAAATT-GAAAAATA
*
36875 AAAAAATTTAAAAATGA
1 AAAAAATTGAAAAAT-A
*
36892 AGAAAAAATGACAAAATA
1 A-AAAAATTGA-AAAATA
36910 GAAAAAATT
1 -AAAAAATT
36919 AGTTTTATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
16 6 0.17
17 10 0.28
18 14 0.39
19 6 0.17
ACGTcount: A:0.72, C:0.02, G:0.08, T:0.18
Consensus pattern (16 bp):
AAAAAATTGAAAAATA
Found at i:37781 original size:14 final size:15
Alignment explanation
Indices: 37762--37794 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
37752 AAAATAGAAC
37762 AAAAAATAG-CAAAA
1 AAAAAATAGACAAAA
37776 AAAAAATAGACAAAA
1 AAAAAATAGACAAAA
37791 AAAA
1 AAAA
37795 TAAGCAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.82, C:0.06, G:0.06, T:0.06
Consensus pattern (15 bp):
AAAAAATAGACAAAA
Found at i:37795 original size:13 final size:12
Alignment explanation
Indices: 37752--37796 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 12
37742 GAAAATTTAT
*
37752 AAAATAGAACAA
1 AAAATAGAAAAA
37764 AAAATAGCAAAAAA
1 AAAATAG--AAAAA
37778 AAAATAGACAAAA
1 AAAATAGA-AAAA
37791 AAAATA
1 AAAATA
37797 AGCAAATGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
12 8 0.28
13 10 0.34
14 11 0.38
ACGTcount: A:0.78, C:0.07, G:0.07, T:0.09
Consensus pattern (12 bp):
AAAATAGAAAAA
Found at i:37802 original size:28 final size:26
Alignment explanation
Indices: 37752--37816 Score: 78
Period size: 28 Copynumber: 2.5 Consensus size: 26
37742 GAAAATTTAT
*
37752 AAAATAGAACAAAAAATAGCAAAAAA
1 AAAATAGAAAAAAAAATAGCAAAAAA
**
37778 AAAATAGACAAAAAAAATAAGCAAATGA
1 AAAATAGA-AAAAAAAAT-AGCAAAAAA
37806 AAAATA-AAAAA
1 AAAATAGAAAAA
37817 TTTGAACTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
26 12 0.35
27 9 0.26
28 13 0.38
ACGTcount: A:0.77, C:0.06, G:0.08, T:0.09
Consensus pattern (26 bp):
AAAATAGAAAAAAAAATAGCAAAAAA
Found at i:38351 original size:66 final size:68
Alignment explanation
Indices: 38204--38352 Score: 157
Period size: 66 Copynumber: 2.2 Consensus size: 68
38194 AAGTGCGAAC
* *
38204 AAAAAGATTTAAGAAAAAGCAAGAAAAAAAAAAAAATGAAAATACAAAATATATAAAATAAAATT
1 AAAAA-ATTTAAGAAAAAGCAAGAAAAAAAAAAAAATGAAAAGACAAAATATATAAAATAAAATA
**
38269 TGAG
65 AAAG
* * * *
38273 AAAAAA--TGAGAAAAAG-AAGAAAAAAATAAAAAAT-AAGAGGCAAAA-ATATGAAATAAAA-A
1 AAAAAATTTAAGAAAAAGCAAGAAAAAAA-AAAAAATGAAAAGACAAAATATATAAAATAAAATA
38332 AAAG
65 AAAG
38336 AAAAAATTTATAGAAAA
1 AAAAAATTTA-AGAAAA
38353 TTTTTTTTTA
Statistics
Matches: 67, Mismatches: 9, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
63 8 0.12
64 12 0.18
65 19 0.28
66 22 0.33
68 1 0.01
69 5 0.07
ACGTcount: A:0.72, C:0.02, G:0.11, T:0.15
Consensus pattern (68 bp):
AAAAAATTTAAGAAAAAGCAAGAAAAAAAAAAAAATGAAAAGACAAAATATATAAAATAAAATAA
AAG
Found at i:38528 original size:20 final size:20
Alignment explanation
Indices: 38492--38538 Score: 55
Period size: 19 Copynumber: 2.4 Consensus size: 20
38482 AAGATAGAAA
38492 AATAAAAATTTCAAAACT-T
1 AATAAAAATTTCAAAACTAT
38511 AATAAAAATTT-ATGAAACTAT
1 AATAAAAATTTCA--AAACTAT
38532 AA-AAAAA
1 AATAAAAA
38539 AGAAAAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 1 0.04
19 11 0.44
20 10 0.40
21 3 0.12
ACGTcount: A:0.64, C:0.06, G:0.02, T:0.28
Consensus pattern (20 bp):
AATAAAAATTTCAAAACTAT
Found at i:38561 original size:20 final size:19
Alignment explanation
Indices: 38536--38602 Score: 68
Period size: 20 Copynumber: 3.6 Consensus size: 19
38526 AACTATAAAA
38536 AAAAGAAAAAAAAATAAAGC
1 AAAAGAAAAAAAAA-AAAGC
38556 AAAAGAAAAAATAAAAAA-C
1 AAAAGAAAAAA-AAAAAAGC
* *
38575 ACAA-AAAATAAAAAAAG-
1 AAAAGAAAAAAAAAAAAGC
*
38592 AAAATAAAAAA
1 AAAAGAAAAAA
38603 GGACAAAATT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
17 9 0.22
18 10 0.25
19 4 0.10
20 14 0.35
21 3 0.08
ACGTcount: A:0.84, C:0.04, G:0.06, T:0.06
Consensus pattern (19 bp):
AAAAGAAAAAAAAAAAAGC
Found at i:38566 original size:17 final size:15
Alignment explanation
Indices: 38532--38595 Score: 69
Period size: 16 Copynumber: 4.2 Consensus size: 15
38522 ATGAAACTAT
*
38532 AAAAA-AAAGAAA-A
1 AAAAATAAAAAAAGA
38545 AAAAATAAAGCAAAAGA
1 AAAAATAAA--AAAAGA
*
38562 AAAAATAAAAAACACA
1 AAAAATAAAAAA-AGA
38578 AAAAATAAAAAAAGA
1 AAAAATAAAAAAAGA
38593 AAA
1 AAA
38596 TAAAAAAGGA
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
13 5 0.12
14 3 0.07
15 8 0.19
16 17 0.40
17 10 0.23
ACGTcount: A:0.84, C:0.05, G:0.06, T:0.05
Consensus pattern (15 bp):
AAAAATAAAAAAAGA
Found at i:38573 original size:36 final size:36
Alignment explanation
Indices: 38530--38602 Score: 94
Period size: 36 Copynumber: 2.0 Consensus size: 36
38520 TTATGAAACT
* *
38530 ATAAAAAAAAGAAAAAA-AAATAAAGCAAAAGAAAAA
1 ATAAAAAAAACAAAAAATAAAAAAAG-AAAAGAAAAA
* *
38566 ATAAAAAACACAAAAAATAAAAAAAGAAAATAAAAA
1 ATAAAAAAAACAAAAAATAAAAAAAGAAAAGAAAAA
38602 A
1 A
38603 GGACAAAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 25 0.78
37 7 0.22
ACGTcount: A:0.84, C:0.04, G:0.05, T:0.07
Consensus pattern (36 bp):
ATAAAAAAAACAAAAAATAAAAAAAGAAAAGAAAAA
Found at i:38610 original size:29 final size:31
Alignment explanation
Indices: 38544--38602 Score: 86
Period size: 29 Copynumber: 1.9 Consensus size: 31
38534 AAAAAAGAAA
38544 AAAAAATAAAGCAAAAGAAAAAATAAAAAACAC
1 AAAAAATAAA-CAAAAG-AAAAATAAAAAACAC
38577 AAAAAATAAA-AAAAG-AAAATAAAAAA
1 AAAAAATAAACAAAAGAAAAATAAAAAA
38603 GGACAAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 11 0.42
31 5 0.19
33 10 0.38
ACGTcount: A:0.83, C:0.05, G:0.05, T:0.07
Consensus pattern (31 bp):
AAAAAATAAACAAAAGAAAAATAAAAAACAC
Done.