genome.fa.s211.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168036.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_289, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38659

Tables:   1   

This is table  1  of  1  ( 113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
745--818	25	2.8	25	76	10	60	40	1	0	58	1.07
919--2112	182	6.6	178	73	9	541	39	7	9	42	1.67
873--2112	539	2.3	540	82	3	1433	39	8	10	42	1.68
2350--2406	17	3.2	17	72	18	53	57	1	1	38	1.19
2416--2480	28	2.3	28	77	15	71	60	4	4	30	1.37
2660--2684	13	1.9	13	100	0	50	40	0	0	60	0.97
2904--2940	19	1.9	19	89	10	58	45	2	2	48	1.30
3229--3290	32	2.0	31	87	9	90	51	0	4	43	1.23
3240--3291	15	3.4	15	72	12	52	50	0	3	46	1.20
3489--3537	21	2.3	21	82	10	55	44	4	2	48	1.33
4072--4130	26	2.5	24	81	13	68	50	1	0	47	1.11
4072--4170	31	3.7	27	71	22	75	50	3	0	46	1.16
4275--4327	21	2.5	21	77	17	56	43	0	0	56	0.99
4673--4711	20	2.0	19	85	5	51	43	0	0	56	0.99
4695--4753	17	3.3	17	75	11	55	44	3	0	52	1.17
4680--4768	36	2.5	36	77	12	101	44	2	0	52	1.13
4890--4997	10	10.4	10	66	24	55	49	1	3	45	1.30
4910--4969	27	2.3	27	82	5	70	51	0	3	45	1.17
4931--4994	22	2.9	21	78	19	58	51	3	1	43	1.26
5647--5706	23	2.7	21	73	21	59	46	1	5	46	1.34
7543--7580	20	2.0	18	90	10	58	42	5	0	52	1.24
7570--7609	21	1.9	21	85	10	55	40	2	2	55	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8376--8432	11	5.0	11	75	12	53	45	0	3	50	1.18
8506--8544	18	2.1	18	85	4	51	51	0	0	48	1.00
8581--8623	15	2.8	15	82	13	52	48	2	0	48	1.14
8757--8805	18	2.6	20	81	12	59	44	0	0	55	0.99
8788--8868	9	9.2	9	69	26	50	45	0	2	51	1.14
8794--8867	27	2.7	30	76	21	81	47	0	2	50	1.15
9085--9175	40	2.3	40	80	3	103	47	1	2	49	1.21
9677--9748	6	12.7	6	69	16	55	48	1	2	47	1.25
9708--9752	15	2.9	16	84	12	58	48	2	2	46	1.26
10043--10087	15	2.6	18	83	16	60	46	0	0	53	1.00
10766--10803	7	5.4	7	84	12	51	50	0	0	50	1.00
10731--10806	40	1.9	39	89	7	118	50	0	1	48	1.09
10731--10803	21	3.6	21	75	12	80	49	0	1	49	1.09
11094--11139	12	3.6	13	74	14	51	52	2	0	45	1.13
11441--11499	27	2.2	27	85	8	77	42	1	10	45	1.48
12459--12510	13	4.2	12	79	11	61	51	0	1	46	1.12
12459--12510	25	2.1	24	82	10	61	51	0	1	46	1.12
12648--12684	14	2.7	14	91	4	58	45	0	0	54	1.00
12784--12838	23	2.4	23	96	0	101	30	0	14	54	1.41
13326--13424	18	5.3	19	66	20	57	44	2	3	50	1.28
13453--13485	13	2.5	13	85	14	50	42	0	6	51	1.26
13442--13536	46	2.1	44	82	9	111	43	1	4	51	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13453--13512	25	2.4	25	83	8	68	43	0	3	53	1.17
13480--13514	18	1.9	18	94	0	61	45	0	0	54	0.99
13929--13967	13	2.8	14	88	11	62	48	0	0	51	1.00
13956--13996	22	2.0	22	85	9	59	41	0	0	58	0.98
14477--14539	30	2.0	31	85	11	85	52	3	0	44	1.17
15348--15378	14	2.2	14	94	0	53	54	0	0	45	0.99
15659--15716	10	6.4	9	75	16	50	51	1	0	46	1.11
15684--15736	24	2.3	23	87	9	72	49	1	1	47	1.23
16126--16191	15	4.3	15	75	17	73	56	0	1	42	1.08
16129--16206	24	3.3	24	75	15	72	53	0	1	44	1.08
16046--16205	23	6.5	24	69	21	91	53	1	1	43	1.22
16293--16347	25	2.2	25	87	6	76	49	0	0	50	1.00
16296--16334	16	2.5	15	83	4	51	46	0	0	53	1.00
16293--16352	27	2.3	25	80	11	68	48	0	0	51	1.00
16293--16362	26	2.6	28	78	13	85	47	1	0	51	1.09
16455--16521	19	3.6	19	78	9	66	41	2	1	53	1.25
16746--16770	12	2.1	12	100	0	50	40	0	0	60	0.97
18148--18710	181	3.1	177	77	6	549	38	7	10	43	1.67
18520--18939	225	1.9	224	80	3	504	39	8	10	41	1.69
18792--19268	176	2.7	179	80	4	509	42	7	9	40	1.66
18217--19327	582	1.9	584	79	5	1253	39	8	9	42	1.68
18744--19454	181	4.0	180	76	5	598	41	8	9	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20011--20060	11	4.9	10	75	20	50	48	0	2	50	1.12
20233--21641	181	7.8	180	78	6	1215	39	8	10	42	1.69
20240--21651	361	3.9	357	78	5	1317	39	7	10	42	1.68
21817--22277	181	2.5	181	81	2	523	44	9	10	36	1.71
21181--22113	482	1.9	481	81	4	1101	40	9	12	37	1.74
22294--23195	181	5.0	178	77	6	776	41	9	7	40	1.67
23516--24918	180	7.8	181	78	5	1261	39	8	10	41	1.69
23516--24918	361	3.9	357	78	5	1276	39	8	10	41	1.69
24669--25213	300	1.8	301	83	2	736	41	8	11	38	1.72
25093--25552	181	2.5	181	81	3	487	43	8	10	36	1.71
24458--25389	481	1.9	481	80	4	1058	40	9	12	37	1.75
25570--26851	181	7.1	179	76	7	981	42	9	7	40	1.67
26938--27617	182	3.8	177	76	8	584	40	10	8	41	1.69
28360--28732	178	2.1	177	82	4	453	43	6	8	41	1.61
28022--29019	180	5.6	179	74	10	591	40	7	10	42	1.66
29131--29194	17	3.8	16	74	24	60	32	4	3	59	1.34
29140--29211	31	2.2	34	83	11	89	33	4	2	59	1.31
29957--30012	29	1.9	29	85	0	76	46	3	0	50	1.19
30053--30115	25	2.4	27	84	7	76	49	0	3	47	1.17
30447--30481	15	2.3	15	90	9	54	54	0	0	45	0.99
30465--30531	29	2.3	30	80	15	77	44	1	2	50	1.26
30491--30536	19	2.4	19	82	7	58	43	0	2	54	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30527--30558	16	1.9	17	93	6	57	40	6	0	53	1.26
30960--30998	19	2.1	19	85	9	53	48	2	2	46	1.29
31111--31162	21	2.4	21	78	18	54	53	0	1	44	1.11
31254--31280	14	1.9	14	100	0	54	55	0	0	44	0.99
31537--31598	29	2.1	27	82	11	70	48	0	3	48	1.17
31582--31640	23	2.5	24	78	8	68	45	1	0	52	1.10
32448--32491	16	2.8	16	80	16	56	50	0	0	50	1.00
32447--32488	22	2.0	21	85	4	57	52	0	0	47	1.00
32984--33032	21	2.5	19	86	6	62	36	4	0	59	1.17
33038--33087	27	1.9	25	88	8	73	50	0	2	48	1.12
33033--33100	20	3.3	21	79	16	72	52	0	2	44	1.16
33477--33503	14	1.9	14	100	0	54	66	3	0	29	1.09
33982--34020	19	2.1	18	90	4	60	56	0	0	43	0.99
34332--34409	25	3.0	27	78	9	83	51	2	1	44	1.23
34352--34399	16	2.9	16	81	12	62	45	0	2	52	1.12
34349--34406	18	3.4	18	75	17	54	50	0	1	48	1.11
34490--34537	16	3.3	14	78	18	53	58	6	2	33	1.35
35526--35559	6	5.8	6	86	6	52	50	0	0	50	1.00
35760--36047	148	1.9	148	83	4	366	43	9	6	40	1.63
36321--36367	20	2.2	20	85	11	58	48	2	0	48	1.13
36532--36603	29	2.5	29	77	8	76	52	1	1	44	1.18
36561--36622	19	3.3	18	76	10	63	53	0	1	45	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36947--36979	13	2.4	14	90	10	50	51	0	6	42	1.26
37441--37474	16	2.0	18	88	11	54	47	0	2	50	1.16
38132--38170	19	2.2	19	86	9	55	48	7	7	35	1.61

Tables:   1

The End!