Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14313602
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 50000 characters in sequence are not A, C, G, or T
File 2 of 74
Found at i:84530 original size:9 final size:8
Alignment explanation
Indices: 84506--84601 Score: 63
Period size: 8 Copynumber: 11.6 Consensus size: 8
84496 CTTCATTTTA
84506 TTTTTATT
1 TTTTTATT
84514 TTTTTATT
1 TTTTTATT
84522 TTTTGTA-T
1 TTTT-TATT
**
84530 TTTACATT
1 TTTTTATT
84538 TTTATT-TT
1 TTT-TTATT
84546 ATTTTTATT
1 -TTTTTATT
84555 TTTATTA-T
1 TTT-TTATT
*
84563 TTTATATT
1 TTTTTATT
*
84571 TTTTTCTT
1 TTTTTATT
*
84579 TCTTTTCTT
1 T-TTTTATT
*
84588 TTATTATT
1 TTTTTATT
84596 ATTTTT
1 -TTTTT
84602 TAAGTATTTA
Statistics
Matches: 69, Mismatches: 10, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
7 3 0.04
8 44 0.64
9 22 0.32
ACGTcount: A:0.16, C:0.04, G:0.01, T:0.79
Consensus pattern (8 bp):
TTTTTATT
Found at i:84595 original size:47 final size:47
Alignment explanation
Indices: 84501--84601 Score: 122
Period size: 44 Copynumber: 2.2 Consensus size: 47
84491 TTTCTCTTCA
*
84501 TTTTATTTTTATTTTTTTATTTTTTGTATTTTACATTTTTATTTTAT
1 TTTTATTTTTATTTTTTTATTTTTTGTACTTTACATTTTTATTTTAT
*
84548 TTTTATTTTTATTATTTTATATTTTTT-T-CTTT-C--TTTTCTTTTAT
1 TTTTATTTTTATT-TTTT-TATTTTTTGTACTTTACATTTTTATTTTAT
*
84592 TATTATTTTT
1 TTTTATTTTT
84602 TAAGTATTTA
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
44 19 0.39
46 1 0.02
47 16 0.33
48 5 0.10
49 8 0.16
ACGTcount: A:0.16, C:0.04, G:0.01, T:0.79
Consensus pattern (47 bp):
TTTTATTTTTATTTTTTTATTTTTTGTACTTTACATTTTTATTTTAT
Found at i:85699 original size:26 final size:28
Alignment explanation
Indices: 85659--85718 Score: 90
Period size: 26 Copynumber: 2.2 Consensus size: 28
85649 TTAATATTCT
85659 TTTTATCTTTATTTTATT-TTTATTTTTG
1 TTTTATCTTTATTTTATTATTTA-TTTTG
85687 TTTTA-CTTT-TTTTATTATTTATTTTG
1 TTTTATCTTTATTTTATTATTTATTTTG
85713 TTTTAT
1 TTTTAT
85719 TATTCTATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
26 17 0.57
27 8 0.27
28 5 0.17
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.78
Consensus pattern (28 bp):
TTTTATCTTTATTTTATTATTTATTTTG
Found at i:85716 original size:20 final size:20
Alignment explanation
Indices: 85658--85711 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 20
85648 TTTAATATTC
*
85658 TTTTTATCTTTATTTTA---
1 TTTTTATTTTTATTTTACTT
*
85675 TTTTTATTTTTGTTTTACTT
1 TTTTTATTTTTATTTTACTT
85695 TTTTTATTATTTATTTT
1 TTTTTATT-TTTATTTT
85712 GTTTTATTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 15 0.50
20 8 0.27
21 7 0.23
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.80
Consensus pattern (20 bp):
TTTTTATTTTTATTTTACTT
Found at i:85718 original size:17 final size:18
Alignment explanation
Indices: 85696--85729 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
85686 GTTTTACTTT
85696 TTTTATTATT-TATTTTG
1 TTTTATTATTCTATTTTG
85713 TTTTATTATTCTATTTT
1 TTTTATTATTCTATTTT
85730 CTTTAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (18 bp):
TTTTATTATTCTATTTTG
Found at i:85840 original size:63 final size:60
Alignment explanation
Indices: 85744--85967 Score: 267
Period size: 60 Copynumber: 3.7 Consensus size: 60
85734 AAATAAAAAT
*
85744 AAAAAAAAAA-TTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTCAAAAATAAAAGTTTCCA
1 AAAAAAAAAATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCAAAAAT-AAAGTTT-CA
* *
85805 AAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTTA
1 AAAAAAAAA-ATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCAAAAATAAAGTTTCA
* * * * *
85865 AAAAAAATCAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTC-
1 AAAAAAA-AAATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCAAAAATAAAGTTTCA
* * * * *
85925 -AAAAGAATATGTTTGGGAAAAAGTTGAAAGTATCAATTGTCCT
1 AAAAAAAAAATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
85968 TGCACAAGAA
Statistics
Matches: 141, Mismatches: 18, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
58 30 0.21
59 5 0.04
60 48 0.34
61 16 0.11
62 4 0.03
63 38 0.27
ACGTcount: A:0.46, C:0.08, G:0.14, T:0.32
Consensus pattern (60 bp):
AAAAAAAAAATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCAAAAATAAAGTTTCA
Found at i:87063 original size:181 final size:180
Alignment explanation
Indices: 86441--91158 Score: 2532
Period size: 180 Copynumber: 26.1 Consensus size: 180
86431 TTTCTGAATA
* * * * * ** *
86441 AATTCAAATAGTTGTGACTATTTGAACAATTGTATATTTAAAATCATTATGATATTTTGTTTTAT
1 AATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGT
* * * *
86506 CATAAAACAATTGTTTCAATTCATTA-AAGCTTATTCGAAATAAAATAATAATAATTTATTAATA
66 CATAAAACAATTGTTTTAGTTCA-TACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATA
* * * * * * * *
86570 TTTCAAAAATTAATAAGTAAGTGATTCAAAAAGTGAATCTGTTTACCAAATC
130 TTT-AAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCGAACC
* * * * * *
86622 AATTCAAATAATTATGGCTATTTCAACAATTATCTATTTCAAATCATTATGAAC-ATTGTTTTGT
1 AATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGT
* *** * *
86686 CATACAACAATTGTTTTTCATCATACAAGCCTATTTGGAATAAAATAATACTAATTTATTAATAT
66 CATAAAACAATTGTTTTAGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATAT
* * * * *
86751 TTCAAAAATTAATAGGTAAAAGATTTAAAAAATAAATCTATTTATTG----
131 TT-AAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCGAACC
* * * * * * ** *
86798 AA-GC----AGTTCT---TATTTGAATAATTACCTATTTCAAATCATTATAATTTTTTATTCTAT
1 AATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTT-T-T
* * *
86855 -TC-T-AAAGAATTGTTTCAGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTAATAAT
64 GTCATAAAACAATTGTTTTAGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAAT
* * * * *
86917 ATTATAAAAATTAATAACTAAGGGATTTAAAAAATAAATTTGTTTGTCGAATC
129 ATT-TAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCGAACC
* * * ** * ** **
86970 AATTTAAATAGTTAAGACAATACGAATAATTATCTATTTCAAATTATTATGAAATTTTGTTTTGT
1 AATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGT
* *
87035 CATAAAACAATTGTTTTAGTTCATACAAGCTTATTTGAAATAAAATAATACAAATTTATTAACAT
66 CATAAAACAATTGTTTTAGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATAT
* * * * * **
87100 TCCAAAAATTAATAAGT----GATTTAAAAAGTAAATCTATTTATTGAATT
131 T-TAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCGAACC
* * * * * * * * * *
87147 ATTTCAAATAATTATGGCCATTTCAACATTTATCTATTTCAAACCATTATTACCTTTTGTTTGGT
1 AATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGT
* * * * * * * *
87212 CATATAACAAGTGTTTTTGATCATTCAAGCTTA-TTCAGAATACAATAATACTAATTTATTAATC
66 CATAAAACAATTGTTTTAGTTCATACAAGCTTATTTGA-AATAAAATAATACTAATTTATTAATA
* * * * *
87276 TTTCAAAAATTAATAAGTAAGCGATTTAAAAAATAAATCTGTTCATCAAACT
130 TTT-AAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCGAACC
* * * * * * * * *
87328 AGTTCAAAGAATTATAACTATTTGAACAATTGTATACTTCAAATTGTTATAACCTTTTGTTTT-T
1 AATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGT
* * * * * * *
87392 CACAAAACAATTATTTTTGTTCATACAAGCTTATTTAAAATAAAATAATACAAATATAATAATAT
66 CATAAAACAATTGTTTTAGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATAT
* * * *
87457 TCTAAAAATTAATAACTAAGAGAATT-AAAAATAAATTTGTTTGA-CAAACC
131 T-TAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTT-ATCGAACC
* * * * *
87507 AGTTCAAATATTTAAGACTATATGAACAATTATCTATTTCAAAAT-GTTATGACCTTTTGCTTTG
1 AATTCAAATAGTTATGACTATTTGAACAATTATCTATTTC-AAATCGTTATGACCTTTTGTTTTG
* * * * * * *
87571 TCACAAAACACA-T-TTTCAATTCATACTAGGTGATTTGAAATAAAATAA-AATGAATTTATTAA
65 TCATAAAACA-ATTGTTTTAGTTCATACAAGCTTATTTGAAATAAAATAATACT-AATTTATTAA
* * ** * * **
87633 TATTGCAAAAATTAATAAGTAAGATATTTAAAAAAATATTTCTGTTTACCTCACC
128 TATT-TAAAAATTAATAAGTAAGAGATTT-AAAAAATAAATATGTTTATCGAACC
* * *
87688 AATTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGT
1 AATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGT
* * * * * *
87753 CATAAAACAAATGTTTTTGTTCATATAAG-TT-TGTTCATAATAAAGTAATACTAATCTATTAAT
66 CATAAAACAATTGTTTTAGTTCATACAAGCTTAT-TTGA-AATAAAATAATACTAATTTATTAAT
* * * *
87816 ATTTCAAAAATTAATAA-T---AGATTTAAAAAATAATTATATTTAGCAAACC
129 ATTT-AAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCGAACC
* * * * * * *
87865 AATTCAAATAATTATGACTATTTGATA-AATTATTTATTTCAAATCATTCTGACTTTTTGTTCTA
1 AATTCAAATAGTTATGACTATTTGA-ACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTG
* * * * * *
87929 TTATAAAACATTTGTTTCT-GTTCATACATGCTTA-TTCAGATTAAAATAATATTAATTTATTAA
65 TCATAAAACAATTGTTT-TAGTTCATACAAGCTTATTTGA-AATAAAATAATACTAATTTATTAA
* * * *
87992 TATTTCAACAATTAATAAGTAA-AAATTTTAAAAAATAAATATGTCTATCGAACT
128 TATTT-AAAAATTAATAAGTAAGAGA-TTTAAAAAATAAATATGTTTATCGAACC
* * * * * *
88046 AGA-TCAAATGGTCATGATTATTTGAATAATTATCTATTTCAAATCGTTATGACCCTTTCTTTTG
1 A-ATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTG
* * ** * * * * *
88110 TCATAAAAGATTTGTTTCGGTTCATATAAGTTTATTCGAAATAAAATAATACCAGTTTATTAATA
65 TCATAAAACAATTGTTTTAGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATA
* * * * * *
88175 TTCCAAAAATTAATAATTAAGAGATTTAAAAAA-GAATCTATTTATCGAA-T
130 TT-TAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCGAACC
* * * * * * *
88225 AAGTTTAAAT-GATTATGACTATTTGAACAATTATTTATTTGAAATTGCTATAACATTTTGTTTT
1 AA-TTCAAATAG-TTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTT
* * * ** * *
88289 GACATAAAATAATT-TTTTCTGTTCATACAAGCTTATTTCTAATAAAATAATACAAAATTATTAA
64 GTCATAAAACAATTGTTTT-AGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAA
* * *
88353 TA-TTAAGACAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTCATC-AAAC
128 TATTTAA-A-AATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCGAACC
* * * *
88406 AAGTTCAAAT-GTTATGACTTTTTGAACAATTATTTATTTCAAATTGTTATGACTTTTTGTTTTG
1 AA-TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTG
* * * * * * *
88470 TCACT-AAATAATCG-TTTACGTTCATAAAAGGTTATTCGGATTAAAATAATACTAA-TTATTAA
65 TCA-TAAAACAATTGTTTTA-GTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAA
* * * **
88532 TATTTTGACAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTATCGAATA
128 TA-TTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCGAACC
* * * * * * * * *
88586 AATTGAAATAATCATGATTATTTGAATAATAAACTATTTCAAAACATTATGACCTTTT-TTTTGT
1 AATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGT
* * * * * *
88650 AATAAAACAA-CGATTTCAATTCAAATAAGCTTATTTGAAATAAAATAATACTAATTTATTAATA
66 CATAAAACAATTG-TTTTAGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATA
* * * * *
88714 -TTACTTAAATTAATGAGTAAGAGACTTAAAAAATAAATTTGTTTA-CTGAA-T
130 TTTA--AAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATC-GAACC
* * * * * * * * *
88765 AAGCTT-AAATAGCTATGACTATCTAAATAGTTATCTATTTTAAAACATTATGAACTTTTGTTTT
1 AA--TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTT
* * * * *
88829 GTCATAAAACAATAGGTTCTA-TTCATGCAAGCTTATTTCAAATAAAATAATA-TAAATTGATTA
64 GTCATAAAACAAT-TGTTTTAGTTCATACAAGCTTATTTGAAATAAAATAATACT-AATTTATTA
* * * *
88892 ATATTACAAAAATTAATAAGTAA-AAATTTAAAAAATAAATCTGTTT-TC-TACAC
127 ATATT-TAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCGAAC-C
* * * * * *
88945 ACGTTCAAATAATTAT-ATCTATTTGAACAATTATCCATTTCAATTTGTTATGATCTTTTGTTTT
1 A-ATTCAAATAGTTATGA-CTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTT
* * * ** *
89009 GTCATAAACCAATTGTTTTTGTTCATAAAAGCTTATTTGCTAT-AAATAATACTAATTTATTAAA
64 GTCATAAAACAATTGTTTTAGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAAT
* * *
89073 ATTTCAAAAATTAATAAGTAAAATATTTAAAAAATAAAATATGTTTA-CTGAGCC
129 ATTT-AAAAATTAATAAGTAAGAGATTTAAAAAAT-AAATATGTTTATC-GAACC
** * * *
89127 GGTTCGAATAGTTATGACTATTTGAACAATTATTTATTTCAAATCGTTATGATCTTTTGCCTTTT
1 AATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTG--TTTT
* * * * *
89192 -T-ATAAAA-AATTGTTTCTACTT-ATACAAGTTTATTCGAAATAGAATAATACCAATTTATTAA
64 GTCATAAAACAATTGTTT-TAGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAA
* ** * * *
89253 TATTCTAAGAATTAATAAGTTGGAGATTTAAAAAATAAATATGTTCA-CTAAAC
128 TATT-TAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCGAACC
* * * * * * ****
89306 AAGTTCAAATAGTCAAGTCTATTCGAACTATTAGCTATTTCAAATCGTTATTTTATTTTGTTTTG
1 AA-TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTG
** * ** * * * *
89371 TTGTAAAACAATTATTTCTA-TTCATACAAAATTA-TTCAGAATAAAGTAGTACCAATTTATTAA
65 TCATAAAACAATTGTTT-TAGTTCATACAAGCTTATTTGA-AATAAAATAATACTAATTTATTAA
* * * * *
89434 TATTTCAAAAA-T--TAAG-AACAGATTTAAAAAGCTAAATCTATTTATCAAACC
128 TATTT-AAAAATTAATAAGTAAGAGATTTAAAAA-ATAAATATGTTTATCGAACC
* * * * * * *
89485 AGTTCAAATAGTTATGACTATTTGAACAATTATTTATCTAAAATTGTTATGATCTTTT-TTTTCT
1 AATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGT
** * *
89549 CATAAAGTAATTGTTTCTA-TTCATACAAGCTTA-TT----TAGAGT-A-A--AA--TA-T--T-
66 CATAAAACAATTGTTT-TAGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATA
** *
89598 GCT--AAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTA-CTGAACT
130 TTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATC-GAACC
* * * ** * * * * *
89647 AGTTCAAATAGTTAAGACTATTAGAATGATTAGCTATTTCAAATCATTTTGACCATTTGTTTAGT
1 AATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGT
* * * * * ** * *
89712 CATAAAATAATTGTTTCAATTTATACAA--TTATCT-ATTTAAAATTGTTATGAC-ATTTTATTT
66 CATAAAACAATTGTTTTAGTTCATACAAGCTTATTTGAAATAAAA---TAAT-ACTAATTTA--T
* * ** * * *
89773 TAACA-TAAAATAATTTTTTCAATTCATA-AAATCTTATCCAAAATAAAATAATGTTACTTTAT-
125 TAATATTTAAA-AA-TTAAT-AAGT-A-AGAGAT-TTA--AAAAAT-AAAT-ATG----TTTATC
* *
89835 TAA-T
176 GAACC
* ** * * * * *** ** * ** *
89839 ATTTCAAA-A-TT-TGAGAAGTTGGAGATTTAAAAAAAT-AAATCAGTTTATCGA--ATCAGTTA
1 AATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATC-G-TTAT-GACCTTTTGTTT
* * * * *
89898 TGACTATTTAAACAATT-ATTTA-TTCCAAATCGTTATGACTTTTTATTTTGCCATAA-AACAAT
63 TGTC-A-TAAAACAATTGTTTTAGTT-CATA-C---AAG-C---TTA-TTTG--A-AATAA-AA-
* * *** * * * * *
89960 TGATTTTGTTCACACAAGTTTATTTGGATTAAAATAATATTAATTTATTAATATTTTGACAATTA
111 T-A-----AT-AC-TAA-TTTATTAATATT-TAA-AA-ATTAA--TA--AGTA---AGAGATTTA
* *
90025 AAAAGTAAA-AGGTTT-TC-AA--
157 AAAAATAAATATGTTTATCGAACC
* * * *
90044 AA-T-AAATATGTTTACTGAACAAGTTCAA-ATAGTCATAACTATTTGAATAATTATCTATTTCA
1 AATTCAAATA-G-TTA-TG-ACTATTTGAACA-A-T--TATCTAT----------------TTCA
* * * * * * * * *
90106 AATTGCTATGACCTTTTGTTTCGTCATAAAACAACTGTATTAGTTCACATAGGCTTATTTAAAAT
42 AATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTAGTTCATACAAGCTTATTTGAAAT
* * * * *
90171 AAAATAATACTAATTTATTAATATTCCAAAAATTAATGAGTAAGAGATTTAAAATATGAAGATGT
107 AAAATAATACTAATTTATTAATATT-TAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGT
90236 TTATCGAA-C
171 TTATCGAACC
* * *
90245 AAGTTCAAAT-GATTATGACTATTTGAATAATTATCTATTTCAAA-CGTTATGAGCTTTTGTTGT
1 AA-TTCAAATAG-TTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTT
* * *
90308 GTCATAAAATAATTG-TTTATGTTCATAAAAGCTTATTTCG-AATAAAATAATA-TAAATTTATA
64 GTCATAAAACAATTGTTTTA-GTTCATACAAGCTTATTT-GAAATAAAATAATACT-AATTTATT
* * * *
90370 AATATTTCAAAAATTAATAAGCAA-AAATTTAAAAAATAAAT-TCGTTT-TCTAAAC
126 AATATTT-AAAAATTAATAAGTAAGAGATTTAAAAAATAAATAT-GTTTATCGAACC
* * *
90424 ATATTCAAATAGTTATGGCTATTTGAATAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTG
1 A-ATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTG
* * *
90489 TCATAAACCAATTGTTTCTA-TTCATACAAG-TGTATTTGAAATAAAATAATAATATTTTATTAA
65 TCATAAAACAATTGTTT-TAGTTCATACAAGCT-TATTTGAAATAAAATAATACTAATTTATTAA
* * * * *
90552 TATTCCAAAAATTAATAAGTAA-AAATTTTAAAAAATAAATCTGTTTACCG-AGC
128 TATT-TAAAAATTAATAAGTAAGAGA-TTTAAAAAATAAATATGTTTATCGAACC
* * * * **
90605 AAGTTCATATTA-TTATGATTATTTGAACAATTATTTATTTCAAATAGTTATGATTTTTTGTTTT
1 AA-TTCA-AATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTT
* * * * * *
90669 GTCATAAAACAATTCTTTCTA-TTTATACAAGTTTATTT-AGATTAAAATAATACTATTTTATCA
64 GTCATAAAACAATTGTTT-TAGTTCATACAAGCTTATTTGA-AATAAAATAATACTAATTTATTA
* * * * *
90732 ATATTTTAAAAATTAATAGGTAGGAGATTTAAAAAAATAAATCTATTTACCGAA-C
127 ATA-TTTAAAAATTAATAAGTAAGAGATTT-AAAAAATAAATATGTTTATCGAACC
* * *
90787 AAGTTTAAATAGATT-TGACTATTTGAACAATTATCTATTT-AAAGTTGTTATGACCTTTTGTCT
1 AA-TTCAAATAG-TTATGACTATTTGAACAATTATCTATTTCAAA-TCGTTATGACCTTTTGTTT
* * * * * * * * * *
90850 TGTCACAAAACAATTGTTTCAGTTCATAAAAACTTATCTAAAACAAAATAATAATACTTTTTTAA
63 TGTCATAAAACAATTGTTTTAGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAA
* * * *
90915 TATTTCAAAAATTAATAAGCAAGAGATTTAAAAACTAAAGT-T-TTTTTCCAAACC
128 TATTT-AAAAATTAATAAGTAAGAGATTTAAAAAATAAA-TATGTTTAT-CGAACC
* * * * * * * *
90969 AGTTCAAATAGTTATGACTATTTGAAGAACTATCAATCTCAAATCATTATGATC-TTTGTTTTCT
1 AATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGT
*** * * * *
91033 CATAAAACAATTGTTTTTCATCAT-TAAGCTTATTCG-GATAAAAATAATACTAATTTAATAATA
66 CATAAAACAATTGTTTTAGTTCATACAAGCTTATTTGAAAT-AAAATAATACTAATTTATTAATA
* * * *
91096 TTTCAAAAA-T--TAA-TAAGAGATTTAAAAAATTAATGTGTTTACCGAACT
130 TTT-AAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCGAACC
*
91144 AGTTCAAATAGTTAT
1 AATTCAAATAGTTAT
91159 CTATTTCAAA
Statistics
Matches: 3513, Mismatches: 741, Indels: 572
0.73 0.15 0.12
Matches are distributed among these distances:
159 3 0.00
160 1 0.00
161 4 0.00
162 65 0.02
163 41 0.01
165 4 0.00
166 2 0.00
168 122 0.03
169 7 0.00
170 4 0.00
171 6 0.00
172 8 0.00
174 3 0.00
175 38 0.01
176 11 0.00
177 326 0.09
178 88 0.03
179 387 0.11
180 983 0.28
181 887 0.25
182 212 0.06
183 16 0.00
184 3 0.00
185 4 0.00
186 4 0.00
188 10 0.00
189 24 0.01
190 14 0.00
191 12 0.00
192 8 0.00
193 2 0.00
194 5 0.00
197 18 0.01
198 5 0.00
199 3 0.00
200 16 0.00
201 7 0.00
202 5 0.00
203 5 0.00
204 14 0.00
205 5 0.00
206 14 0.00
207 7 0.00
208 2 0.00
209 7 0.00
210 10 0.00
211 5 0.00
212 10 0.00
213 10 0.00
214 7 0.00
215 3 0.00
216 8 0.00
217 5 0.00
219 3 0.00
220 3 0.00
223 1 0.00
224 2 0.00
227 10 0.00
228 10 0.00
229 10 0.00
230 4 0.00
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (180 bp):
AATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGT
CATAAAACAATTGTTTTAGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATAT
TTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCGAACC
Found at i:87731 original size:360 final size:360
Alignment explanation
Indices: 86443--92681 Score: 3212
Period size: 360 Copynumber: 17.3 Consensus size: 360
86433 TCTGAATAAA
* * * * ** *
86443 TTCAAATAGTTGTGACTATTTGAACAATTGTATATTT-AAAATCATTATGATATTTTGTTTTATC
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAAAT-ATTATGACCTTTTGTTTTGTC
* * *
86507 ATAAAACAATTGTTTCAATTCATTA-AAGCTTATTCGAAATAAAATAATAATAATTTATTAATAT
65 ATAAAACAATT-TTTCAGTTCA-TACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATAT
* * * * * * * * *
86571 TTCAAAAATTAATAAGTAAGTGATTCAAAAAGTGAATCTGTTTACCAAATCAATTCAAATAATTA
128 TTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCTAACCAATTCAAATAGTTA
* * * * *
86636 TGGCTATTTCAACAATTATCTATTTCAAATCATTATGAA-C-ATTGTTTTGTCATACAACAATTG
193 TGACTATTTGAACAATTATCTATTTCAAATCGTTAT-AACCTTTTGTTTTGTCATAAAACAATTG
** * * * *
86699 TTTTTCATCATACAAGCCTATTTGGAATAAAATAATACTAATTTATTAATATT-TCAAAAATTAA
257 TTTTTGTTCATACAAGCTTATTCGAAATAAAATAATACAAATTTATTAATATTCT-AAAAATTAA
* * * * *
86763 TAGGTAAAAGATTTAAAAAATAAATCTATTTATTGAAGC-AG
321 TAAGTAAGAGATTT-AAAAATAAATCTGTTTA-TCAAACAAG
* * * ** *
86804 TTC---------T---TATTTGAATAATTACCTATTTC-AAATCATTATAATTTTTTATTCTAT-
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAAAT-ATTATGACCTTTTGTT-T-TG
* *
86855 TC-T-AAAGAATTGTTTCAGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTAATAATA
63 TCATAAAACAATT-TTTCAGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATA
* * * * * * *
86918 TTAT-AAAAATTAATAACTAAGGGATTTAAAAAATAAATTTGTTTGTCGAATCAATTTAAATAGT
127 TT-TCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCTAACCAATTCAAATAGT
* * ** * ** *
86982 TAAGACAATACGAATAATTATCTATTTCAAATTATTATGAA-ATTTTGTTTTGTCATAAAACAAT
191 TATGACTATTTGAACAATTATCTATTTCAAATCGTTAT-AACCTTTTGTTTTGTCATAAAACAAT
* * * *
87046 TGTTTTAGTTCATACAAGCTTATTTGAAATAAAATAATACAAATTTATTAACATTCCAAAAATTA
255 TGTTTTTGTTCATACAAGCTTATTCGAAATAAAATAATACAAATTTATTAATATTCTAAAAATTA
* ** ** *
87111 ATAAGT----GATTTAAAAAGTAAATCTATTTATTGAATTAT
320 ATAAGTAAGAGATTTAAAAA-TAAATCTGTTTATCAAACAAG
* * * * ** * *
87149 TTCAAATAATTATGGCCATTTCAACATTTATCTATTTCAAACCATTATTACCTTTTGTTTGGTCA
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAAATATTATGACCTTTTGTTTTGTCA
* * * * * * *
87214 TATAACAAGTGTTTT-TGATCATTCAAGCTTA-TTCAGAATACAATAATACTAATTTATTAATCT
66 TAAAACAA-T-TTTTCAGTTCATACAAGCTTATTTGA-AATAAAATAATACTAATTTATTAATAT
* * * * * * * *
87277 TTCAAAAATTAATAAGTAAGCGATTTAAAAAATAAATCTGTTCATCAAACTAGTTCAAAGAATTA
128 TTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCTAACCAATTCAAATAGTTA
* * * * * * *
87342 TAACTATTTGAACAATTGTATACTTCAAATTGTTATAACCTTTTGTTTT-TCACAAAACAATTAT
193 TGACTATTTGAACAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACAATTGT
** * *
87406 TTTTGTTCATACAAGCTTATTTAAAATAAAATAATACAAATATAATAATATTCTAAAAATTAATA
258 TTTTGTTCATACAAGCTTATTCGAAATAAAATAATACAAATTTATTAATATTCTAAAAATTAATA
* * * *
87471 ACTAAGAGAATTAAAAATAAATTTGTTTGA-CAAACCAG
323 AGTAAGAGATTTAAAAATAAATCTGTTT-ATCAAACAAG
* * * * *
87509 TTCAAATATTTAAGACTATATGAACAATTATCTATTTCAAAATGTTATGACCTTTTGCTTTGTCA
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAAATATTATGACCTTTTGTTTTGTCA
* * * * * *
87574 CAAAACACA-TTTTCAATTCATACTAGGTGATTTGAAATAAAATAA-AATGAATTTATTAATATT
66 TAAAACA-ATTTTTCAGTTCATACAAGCTTATTTGAAATAAAATAATACT-AATTTATTAATATT
* * ** * * * *
87637 GCAAAAATTAATAAGTAAGATATTTAAAAAAATATTTCTGTTTACCTCACCAATTCAAATAATTA
129 TCAAAAATTAATAAGTAAGAGATTT-AAAAAATAAATATGTTTATCTAACCAATTCAAATAGTTA
* *
87702 TGACTATTTGAACAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAAATGT
193 TGACTATTTGAACAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACAATTGT
* * * * * *
87767 TTTTGTTCATATAAGTTTGTTC-ATAATAAAGTAATACTAATCTATTAATATT-TCAAAAATTAA
258 TTTTGTTCATACAAGCTTATTCGA-AATAAAATAATACAAATTTATTAATATTCT-AAAAATTAA
* * * *
87830 TAA-T---AGATTTAAAAAATAATTATATTTAGCAAACCAA-
321 TAAGTAAGAGATTT-AAAAATAAATCTGTTTATCAAA-CAAG
* * * * *
87867 TTCAAATAATTATGACTATTTGATA-AATTATTTATTTC-AAATCATTCTGACTTTTTGTTCTAT
1 TTCAAATAATTATGACTATTTGA-ACAATTATCTATTTCAAAAT-ATTATGACCTTTTGTTTTGT
* * * * * * *
87930 TATAAAACATTTGTTTCTGTTCATACATGCTTA-TTCAGATTAAAATAATATTAATTTATTAATA
64 CATAAAACAATT-TTTCAGTTCATACAAGCTTATTTGA-AATAAAATAATACTAATTTATTAATA
* * * * * *
87994 TTTCAACAATTAATAAGTAA-AAATTTTAAAAAATAAATATGTCTATCGAACTAGA-TCAAATGG
127 TTTCAAAAATTAATAAGTAAGAGA-TTTAAAAAATAAATATGTTTATCTAACCA-ATTCAAATAG
* * * * * * * *
88057 TCATGATTATTTGAATAATTATCTATTTCAAATCGTTATGACCCTTTCTTTTGTCATAAAAGATT
190 TTATGACTATTTGAACAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACAAT
** * * * * *
88122 TGTTTCGGTTCATATAAGTTTATTCGAAATAAAATAATACCAGTTTATTAATATTCCAAAAATTA
255 TGTTTTTGTTCATACAAGCTTATTCGAAATAAAATAATACAAATTTATTAATATTCTAAAAATTA
* * * *
88187 ATAATTAAGAGATTTAAAAA-AGAATCTATTTATCGAATAAG
320 ATAAGTAAGAGATTTAAAAATA-AATCTGTTTATCAAACAAG
* * * * * ** * * *
88228 TTTAAATGATTATGACTATTTGAACAATTATTTATTTGAAATTGCTATAACATTTTGTTTTGACA
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAAATATTATGACCTTTTGTTTTGTCA
* * ** * *
88293 TAAAATAATTTTTTCTGTTCATACAAGCTTATTTCTAATAAAATAATACAAAATTATTAATA-TT
66 TAAAACAA-TTTTTCAGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTT
* * *
88357 -AAGACAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTCATC-AAACAAGTTCAAAT-GTT
130 CAA-A-AATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCTAACCAA-TTCAAATAGTT
* * * * * * *
88419 ATGACTTTTTGAACAATTATTTATTTCAAATTGTTATGACTTTTTGTTTTGTCACT-AAATAATC
192 ATGACTATTTGAACAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCA-TAAAACAATT
** * * * * * * * *
88483 GTTTACGTTCATAAAAGGTTATTCGGATTAAAATAATACTAA-TTATTAATATTTTGACAATTAA
256 GTTTTTGTTCATACAAGCTTATTCGAAATAAAATAATACAAATTTATTAATATTCTAAAAATTAA
* * * * *
88547 TAAGTAAAAGATTTAAAAAATAAATATGTTTATCGAATAAA
321 TAAGTAAGAGATTT-AAAAATAAATCTGTTTATCAAACAAG
* * * * * * * *
88588 TTGAAATAATCATGATTATTTGAATAATAAACTATTTCAAAACATTATGACCTTTT-TTTTGTAA
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAAATATTATGACCTTTTGTTTTGTCA
** * * * *
88652 TAAAACAACGATTTCAATTCAAATAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTA
66 TAAAACAA-TTTTTCAGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTT
** * * * * *
88717 CTTAAATTAATGAGTAAGAGACTTAAAAAATAAATTTGTTTA-CTGAA-TAAGCTT-AAATAGCT
130 CAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCT-AACCAA--TTCAAATAGTT
* * * * * * * *
88779 ATGACTATCTAAATAGTTATCTATTTTAAAACATTATGAA-CTTTTGTTTTGTCATAAAACAATA
192 ATGACTATTTGAACAATTATCTATTTCAAATCGTTAT-AACCTTTTGTTTTGTCATAAAACAATT
* * * * * *
88843 GGTTCTATTCATGCAAGCTTATTTC-AAATAAAATAATATAAATTGATTAATATTAC-AAAAATT
256 GTTTTTGTTCATACAAGCTTA-TTCGAAATAAAATAATACAAATTTATTAATATT-CTAAAAATT
* * *
88906 AATAAGTAA-AAATTTAAAAAATAAATCTGTTT-TCTACACACG
319 AATAAGTAAGAGATTT-AAAAATAAATCTGTTTATC-AAACAAG
* ** * *
88948 TTCAAATAATTAT-ATCTATTTGAACAATTATCCATTTCAATTTGTTATGATCTTTTGTTTTGTC
1 TTCAAATAATTATGA-CTATTTGAACAATTATCTATTTCAAAATATTATGACCTTTTGTTTTGTC
* ** * ** *
89012 ATAAACCAATTGTTTTTGTTCATAAAAGCTTATTTGCTAT-AAATAATACTAATTTATTAAAATT
65 ATAAAACAATT-TTTCAGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATT
* * * ** *
89076 TCAAAAATTAATAAGTAAAATATTTAAAAAATAAAATATGTTTA-CTGAGCCGGTTCGAATAGTT
129 TCAAAAATTAATAAGTAAGAGATTTAAAAAAT-AAATATGTTTATCT-AACCAATTCAAATAGTT
* * *
89140 ATGACTATTTGAACAATTATTTATTTCAAATCGTTATGATCTTTTGCCTTTT-T-ATAAAA-AAT
192 ATGACTATTTGAACAATTATCTATTTCAAATCGTTATAACCTTTTG--TTTTGTCATAAAACAAT
** * * * *
89202 TGTTTCTACTT-ATACAAGTTTATTCGAAATAGAATAATACCAATTTATTAATATTCTAAGAATT
255 TGTTT-TTGTTCATACAAGCTTATTCGAAATAAAATAATACAAATTTATTAATATTCTAAAAATT
** * *
89266 AATAAGTTGGAGATTTAAAAAATAAATATGTTCA-CTAAACAAG
319 AATAAGTAAGAGATTT-AAAAATAAATCTGTTTATC-AAACAAG
* * * * * * * * **** *
89309 TTCAAATAGTCAAGTCTATTCGAACTATTAGCTATTTC-AAATCGTTATTTTATTTTGTTTTGTT
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAAAT-ATTATGACCTTTTGTTTTGTC
* ** * * * *
89373 GTAAAACAATTATTTCTA-TTCATACAAAATTA-TTCAGAATAAAGTAGTACCAATTTATTAATA
65 ATAAAACAATT-TTTC-AGTTCATACAAGCTTATTTGA-AATAAAATAATACTAATTTATTAATA
* * * * * *
89436 TTTCAAAAA-T--TAAG-AACAGATTTAAAAAGCTAAATCTATTTATCAAACCAGTTCAAATAGT
127 TTTCAAAAATTAATAAGTAAGAGATTTAAAAA-ATAAATATGTTTATCTAACCAATTCAAATAGT
* * * * * * * **
89497 TATGACTATTTGAACAATTATTTATCTAAAATTGTTATGATCTTTT-TTTTCTCATAAAGTAATT
191 TATGACTATTTGAACAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACAATT
* * * * *
89561 GTTTCTATTCATACAAGCTTATT-----T---AGAGT--AAA---A-T-AT-TGCT--AAATTAA
256 GTTTTTGTTCATACAAGCTTATTCGAAATAAAATAATACAAATTTATTAATATTCTAAAAATTAA
* * *
89608 TAAGTAAGAGATTTAAAAAATAAATATGTTTA-CTGAACTAG
321 TAAGTAAGAGATTT-AAAAATAAATCTGTTTATC-AAACAAG
* * * ** * * * *
89649 TTCAAATAGTTAAGACTATTAGAATGATTAGCTATTTC-AAATCATTTTGACCATTTGTTTAGTC
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAAAT-ATTATGACCTTTTGTTTTGTC
* * * * ** * *
89713 ATAAAATAATTGTTTCAATTTATACAA--TTATCT-ATTTAAAATTGTTATGAC-ATTTTATTTT
65 ATAAAACAATT-TTTCAGTTCATACAAGCTTATTTGAAATAAAA---TAAT-ACTAATTTA--TT
* * ** * * *
89774 AACA--TAAAATAATTTTTTCAATTCATA-AAATCTTATCCAAAATAAAATAATGTTACTTTAT-
123 AATATTTCAAA-AA-TTAAT-AAGT-A-AGAGAT-TTA--AAAAAT-AAAT-ATG----TTTATC
* * ** * * * * *** ** * ** **
89835 TAA-TATTTCAAA-A-TT-TGAGAAGTTGGAGATTTAAAAAAAT-AAATCAGTT-TATCGAATCA
174 TAACCAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATC-GTTATAAC-CTTTT
* * * * * * * * *
89894 GTTATGACTATTTAAACAATTATTTAT-TCCAAATCGTTATGACTTTTTATTTTGCCATAA-AAC
237 GTTTTGTC-A-TAAAACAATTGTTTTTGTTCATA-C---AAG-C---TTA--TT-CGA-AATAA-
* *** ** * * * *
89957 AATTGATTTTGTTCACACAAGTTTATTTGGATTAAAATAATATTAATTTATTAATATTTTGACAA
287 AA-T-A-----AT-ACA-AA-TTTATTAATATTCTAA-AA-ATTAA--TA--AGTA---AGAGAT
** *
90022 TTAAAAAGTAAA-AGGTTT-TCAAAATAAATATG
333 TTAAAAA-TAAATCTGTTTATC--AA-ACA-A-G
* * * * * * * **
90054 TTTACTGAACAAGTTCAAATAGTCATAACTATTTGAATAATTATCTATTTCAAATTGCTATGACC
1 -TT-C-AAATAA-TT---AT-GAC-T-A-TTTG--AACAATTATCTATTTCAAAATATTATGACC
* * * * * *
90119 TTTTGTTTCGTCATAAAACAACTGTATT-AGTTCACATAGGCTTATTTAAAATAAAATAATACTA
53 TTTTGTTTTGTCATAAAACAA-T-TTTTCAGTTCATACAAGCTTATTTGAAATAAAATAATACTA
* * * * * *
90183 ATTTATTAATATTCCAAAAATTAATGAGTAAGAGATTTAAAATATGAAGATGTTTATCGAA-CAA
116 ATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCTAACCAA
* * * *
90247 GTTCAAAT-GATTATGACTATTTGAATAATTATCTATTTCAAA-CGTTATGAGCTTTTGTTGTGT
181 -TTCAAATAG-TTATGACTATTTGAACAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGT
* * * * *
90310 CATAAAATAATTGTTTATGTTCATAAAAGCTTATTTCG-AATAAAATAATATAAATTTATAAATA
244 CATAAAACAATTGTTTTTGTTCATACAAGCTTA-TTCGAAATAAAATAATACAAATTTATTAATA
* *
90374 TT-TCAAAAATTAATAAGCAA-AAATTTAAAAAATAAAT-TCGTTT-TCTAAACATA-
308 TTCT-AAAAATTAATAAGTAAGAGATTT-AAAAATAAATCT-GTTTATC-AAACA-AG
* * *
90427 TTCAAATAGTTATGGCTATTTGAATAATTATCTATTTC-AAATAGTTATGACCTTTTGTTTTGTC
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAAATA-TTATGACCTTTTGTTTTGTC
* * *
90491 ATAAACCAATTGTTTCTA-TTCATACAAG-TGTATTTGAAATAAAATAATAATATTTTATTAATA
65 ATAAAACAATT-TTTC-AGTTCATACAAGCT-TATTTGAAATAAAATAATACTAATTTATTAATA
* * * ** * *
90554 TTCCAAAAATTAATAAGTAA-AAATTTTAAAAAATAAATCTGTTTA-CCGAGCAAGTTCATATTA
127 TTTCAAAAATTAATAAGTAAGAGA-TTTAAAAAATAAATATGTTTATCTAACCAA-TTCA-AATA
* * * * **
90617 -TTATGATTATTTGAACAATTATTTATTTCAAATAGTTATGATTTTTTGTTTTGTCATAAAACAA
189 GTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACAA
* * * * * * * * * * *
90681 TTCTTTCTATTTATACAAGTTTATT-TAGATTAAAATAATACTATTTTATCAATATTTTAAAAAT
254 TTGTTTTTGTTCATACAAGCTTATTCGA-AATAAAATAATACAAATTTATTAATATTCTAAAAAT
* * * * *
90745 TAATAGGTAGGAGATTTAAAAAAATAAATCTATTTACCGAACAAG
318 TAATAAGTAAGAGATTT--AAAAATAAATCTGTTTATCAAACAAG
* * * *
90790 TTTAAATAGATT-TGACTATTTGAACAATTATCTATTT-AAAGTTGTTATGACCTTTTGTCTTGT
1 TTCAAATA-ATTATGACTATTTGAACAATTATCTATTTCAAA-ATATTATGACCTTTTGTTTTGT
* * * * * * * * *
90853 CACAAAACAATTGTTTCAGTTCATAAAAACTTATCTAAAACAAAATAATAATACTTTTTTAATAT
64 CATAAAACAATT-TTTCAGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATAT
* * * * *
90918 TTCAAAAATTAATAAGCAAGAGATTTAAAAACTAAAGT-T-TTTTTCCAAACCAGTTCAAATAGT
128 TTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAA-TATGTTTAT-CTAACCAATTCAAATAGT
* * * * * * * *
90981 TATGACTATTTGAAGAACTATCAATCTCAAATCATTATGATC-TTTGTTTTCTCATAAAACAATT
191 TATGACTATTTGAACAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACAATT
** * * * *
91045 GTTTTTCATCAT-TAAGCTTATTCG-GATAAAAATAATACTAATTTAATAATATT-TCAAAAA-T
256 GTTTTTGTTCATACAAGCTTATTCGAAAT-AAAATAATACAAATTTATTAATATTCT-AAAAATT
* * * * *
91106 --TAA-TAAGAGATTTAAAAAATTAATGTGTTTACCGAACTAG
319 AATAAGTAAGAGATTT-AAAAATAAATCTGTTTATCAAACAAG
* * * * *
91146 TTCAAATAGTTAT--CTATTT---C-A--A---ATTGC-------TCTGACCTTTTGTTTAGTTA
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAAATATTATGACCTTTTGTTTTGTCA
* * * * * *
91193 TACAATAATTGTTTCAATTCATACAAGCTTATTTGGAATAAAATAATACTAATTTATTAACATTA
66 TAAAACAATT-TTTCAGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTT
* * * * * * *
91258 AAAAAATTAGTAAGCACGAGATTTGAAAATATAAATCTATTTA-CTGAA-CAAGTTCAAATAGTT
130 CAAAAATTAATAAGTAAGAGATTT-AAAAAATAAATATGTTTATCT-AACCAA-TTCAAATAGTT
* * * * * * * * * *
91321 ATGACTATTTAAATAATTATTTATTTAAAATCATT-TGACCATTTGTTTTATCATAAAATAGTTG
192 ATGACTATTTGAACAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACAATTG
* * * * * * *
91385 TTTTAGTTCATAAAATCTTA-TCCAAATAAAATAATACTACTTTATTAATATT-TCAAAAGTTAA
257 TTTTTGTTCATACAAGCTTATTCGAAATAAAATAATACAAATTTATTAATATTCT-AAAAATTAA
* * *
91448 TAAGTAAAAGATTTAAAAAATAAAT-TAGTTTACCGAATC-AG
321 TAAGTAAGAGATTT-AAAAATAAATCT-GTTTATC-AAACAAG
* * * * *
91489 TTCAAATAATTATGGCCATTTGAAAAACTATCTATTTC-AAATCATTATTACCTTTTGTTTTGTC
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAAAT-ATTATGACCTTTTGTTTTGTC
* * * *
91553 ATAAAACATTGTTTTCA--ACATACAAGTTTATTTGAAATAAAATAATACTAATTCATTAATATT
65 ATAAAACAAT-TTTTCAGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATT
* * * * * * *
91616 TCAAGAA-T--TAA-TAAGAGATTTAAAAAATATATCTGTTTACCAAACCAGTTCAAAAAGTTAT
129 TCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCTAACCAATTCAAATAGTTAT
* * * * * * *
91677 GACTATATGAATAATTACCTATTTTAAATTGTTATAACCTTTTGTTCTATCATAAAACAATTGTT
194 GACTATTTGAACAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACAATTGTT
* * * * * * *
91742 TATATCCATACAAGCTTATTC-AGAATAAAATAATACTAATTTAGTACTATTTTAAAAATTAATA
259 TTTGTTCATACAAGCTTATTCGA-AATAAAATAATACAAATTTATTAATATTCTAAAAATTAATA
* * * * *
91806 ACTAAGATATTTAAAAAATAAATCTGTTT-GCTGAACTAG
323 AGTAAGAGATTT-AAAAATAAATCTGTTTATC-AAACAAG
* * * * * * * * *
91845 TTCAAACAGTTAAGACTATATGAATAATTATTTATTTCAAATTGTTATGACCATTTGTTTTGTCA
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAAATATTATGACCTTTTGTTTTGTCA
* * * * * *
91910 TAAAACAATTATTTTAGCTCATACAAGCTTATTCGAAATAGAATAAAAATAATTT-TTAATATTT
66 TAAAACAATT-TTTCAGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTT
* * * * * ** * ** * *
91974 CAAAAATT--T-A-TAAGGGATTTAGAAAATAATTATGTTTACCAAATTAGTTTGAATAATTATA
130 CAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCTAACCAATTCAAATAGTTATG
* * * * *
92035 AC-ATTTAAATAATTATTTATTTCAAATCGTTATTA-CTTTATGTTTTGTCATAAAATAATTGTT
195 ACTATTTGAACAATTATCTATTTCAAATCGTTATAACCTTT-TGTTTTGTCATAAAACAATTGTT
* * * ** * * *
92098 TTTGTTAATATAAGTTTATTTTAAAGAAAATAACACTAATTTATTAATATT-TAGAAAATTAATC
259 TTTGTTCATACAAGCTTATTCGAAATAAAATAATACAAATTTATTAATATTCTA-AAAATTAAT-
* * * * *
92162 AA-TAAGAGAATTAAAAAGTAAATTTGCTTATCAAACTAT
322 AAGTAAGAGATTTAAAAA-TAAATCTGTTTATCAAACAAG
* * * * * *
92201 TTCAAATAGTTTTGACTATTTGAATAATTATCTATTTC-TAATCATTATAACATTTTAG-TTTGT
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAAAT-ATTATGACCTTTT-GTTTTGT
* * * ** * * * *
92264 CATCAAACAATTGGTTCTA-TTCATACTATTTTA-TTCAGAATAAAATAACATTAATTTAATAAT
64 CATAAAACAATT-TTTC-AGTTCATACAAGCTTATTTGA-AATAAAATAATACTAATTTATTAAT
* * *** * * * ** ** *
92327 ATTTCGAAACTTAATAACCGAGAAAATTAAAAAATAAATCTAATTGCCGAACCAATTCAAATAGT
126 ATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCTAACCAATTCAAATAGT
* ** ** * ** * *
92392 TAAGACTACATGAATGATTATCTATGTCAAATTATTATAACCTTTTGTTTTATCGTAAAACAATT
191 TATGACTATTTGAACAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACAATT
* * * * * * * * * * *
92457 G-TTTTGTCCGTACAAGCTTATTAGGATTTAAATAATACTAATTCAATAATGTTTTAAAAA-T--
256 GTTTTTGTTCATACAAGCTTATTCGAAATAAAATAATACAAATTTATTAATATTCTAAAAATTAA
* * * *
92518 TAA-T-A-AGATTTAAAAAATAAATTTTTTTATCGAATAAG
321 TAAGTAAGAGATTT-AAAAATAAATCTGTTTATCAAACAAG
** * * * * * * * *
92556 TTCAAATGGTTAAGACTATTAGAATAATTATCTATTTC-AAATCGTTCTAACCTTTTGTTTAGTT
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAAAT-ATTATGACCTTTTGTTTTGTC
* ** *
92620 ATAAAACAATTGTTTCAGCTCATACAAGCTTATTCAAAATAAATTAATACTAATTTATTAAT
65 ATAAAACAATT-TTTCAGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAAT
92682 TACTATTTGA
Statistics
Matches: 4507, Mismatches: 1035, Indels: 678
0.72 0.17 0.11
Matches are distributed among these distances:
337 4 0.00
338 99 0.02
339 111 0.02
340 136 0.03
341 4 0.00
342 12 0.00
343 43 0.01
344 10 0.00
345 31 0.01
346 2 0.00
347 2 0.00
348 143 0.03
349 122 0.03
350 13 0.00
351 28 0.01
352 8 0.00
353 7 0.00
354 87 0.02
355 194 0.04
356 375 0.08
357 222 0.05
358 484 0.11
359 318 0.07
360 722 0.16
361 677 0.15
362 133 0.03
363 199 0.04
364 14 0.00
365 2 0.00
366 2 0.00
369 2 0.00
370 3 0.00
371 1 0.00
372 2 0.00
373 1 0.00
375 5 0.00
376 10 0.00
377 11 0.00
380 3 0.00
382 2 0.00
383 1 0.00
384 7 0.00
385 2 0.00
386 10 0.00
387 2 0.00
388 3 0.00
389 2 0.00
391 1 0.00
394 3 0.00
395 6 0.00
396 4 0.00
397 4 0.00
398 1 0.00
399 6 0.00
400 3 0.00
401 11 0.00
402 10 0.00
403 2 0.00
404 3 0.00
405 6 0.00
406 5 0.00
407 20 0.00
408 8 0.00
409 17 0.00
410 18 0.00
411 7 0.00
412 1 0.00
413 6 0.00
414 5 0.00
415 3 0.00
416 9 0.00
417 4 0.00
418 55 0.01
419 6 0.00
420 6 0.00
421 6 0.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.40
Consensus pattern (360 bp):
TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAAATATTATGACCTTTTGTTTTGTCA
TAAAACAATTTTTCAGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTC
AAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCTAACCAATTCAAATAGTTATGA
CTATTTGAACAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACAATTGTTTT
TGTTCATACAAGCTTATTCGAAATAAAATAATACAAATTTATTAATATTCTAAAAATTAATAAGT
AAGAGATTTAAAAATAAATCTGTTTATCAAACAAG
Found at i:90474 original size:17 final size:18
Alignment explanation
Indices: 90427--90475 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 18
90417 TCTAAACATA
90427 TTCAAATAGTTATGGCTAT
1 TTCAAATAGTTAT-GCTAT
* *
90446 TT-GAATAATTAT-CTAT
1 TTCAAATAGTTATGCTAT
90462 TTCAAATAGTTATG
1 TTCAAATAGTTATG
90476 ACCTTTTGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
16 6 0.25
17 8 0.33
18 8 0.33
19 2 0.08
ACGTcount: A:0.35, C:0.08, G:0.12, T:0.45
Consensus pattern (18 bp):
TTCAAATAGTTATGCTAT
Found at i:91619 original size:518 final size:525
Alignment explanation
Indices: 86434--92461 Score: 1970
Period size: 541 Copynumber: 11.2 Consensus size: 525
86424 ACAGTGTTTT
* * * * * * ** *
86434 CTGAATAAATTCAAATAGTTGTGACTATTTGAACAATTGTATATTTAAAATCATTATGA-TATTT
1 CTGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATTTATTTAAAATTGTTATGACCA-TT
* * * * * * *
86498 TGTTTTATCATAAAACAATTGTTTCAATTCATTAAAGCTTATTCGAAATAAAATAATAATAATTT
65 TGTTTTGTCATAAAACAATTGTTTTAGTTCATAAAAACTTA-TCAAAATAAAATAATAATACTTT
* * * * *
86563 ATTAATATTTCAAAAATTAATAAGTAAGTGATTCAAAAAGTGAATCT-GTTTACCAAATCAATTC
129 -TTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAAT-TAGTTTACCAAATCAGTTC
* * * * * * * *
86627 AAATAATTATGGCTATTTCAACAATTATCTATTTCAAATCATTATGAAC-ATTGTTTTGTCATAC
192 AAATAATTATGACCATTTGAAAAACTATCTATTTCAAATCATTAT-TACTTTTGTTTTGTCATAA
* * ** *
86691 AACAATTGTTTTTCATCATACAAGCCTATTTGGAATAAAATAATACTAATTTATTAATATTTCAA
256 AAC-ATTGTTTTTCAACATATAAGTTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAA
* * * *** * ** *
86756 AAATTAATAGGTAAAAGATTTAAAAAATAAATCTATTTATTGAAGCAGTTC-TTA-TTTGA-ATA
320 AAATT-A-A--TAAGAGATTTAAAAAATATATCTGTTTACCAAACCAGTTCAAAAGTATGATATA
*** ** * * * *
86818 ATTACCTATTTCAAATCATTATAATTTTTTATTCTATTC-T-AAAGAATTGTTTCAGTTCATACA
381 ATTA-CTATTTCAAATTGCTATAACCTTTTGTT-TAGTCATAAAACAATTGTTTCAATTCATACA
* * * *
86881 AGCTTATTT-GAAATAAAATAATACTAATTTAATAATATTATAAAAATTAATAA-CTAAGGGATT
444 AGCTTATTTAG-AATAAAATAATACTAATTTATTAACATTTTAAAAATTAATAAGC-AAGAGATT
* *
86944 TAAAAAATAAATTTGTTT-
507 TAAAAAATAAATCTATTTA
* * * * ** * * * *
86962 GTCGAATCAA-TTTAAATAGTTAAGACAATACGAATAATTATCTATTTCAAATTATTATGA-AAT
1 CT-GAA-CAAGTTCAAATAGTTATGACTATTTGAATAATTATTTATTTAAAATTGTTATGACCA-
* * ** *
87025 TTTGTTTTGTCATAAAACAATTGTTTTAGTTCATACAAGCTTATTTGAAATAAAATAATACA-AA
63 TTTGTTTTGTCATAAAACAATTGTTTTAGTTCATAAAAACTTA-TCAAAATAAAATAATA-ATAC
* * * *** * *
87089 TTTATTAACATTCCAAAAATTAATAAGT----GATTTAAAAAGTAAATCTA-TTTATTGAATTAT
126 TTT-TTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAAT-TAGTTTACCAAATCAG
* * * ** * *
87149 TTCAAATAATTATGGCCATTTCAACATTTATCTATTTCAAACCATTATTACCTTTTGTTTGGTCA
189 TTCAAATAATTATGACCATTTGAAAAACTATCTATTTCAAATCATTATTA-CTTTTGTTTTGTCA
* * * * * * * *
87214 TATAACAAGTGTTTTTGATCAT-TCAAGCTTA-TTCAGAATACAATAATACTAATTTATTAATCT
253 TAAAAC-ATTGTTTTTCAACATAT-AAGTTTATTTGA-AATAAAATAATACTAATTTATTAATAT
* * * * *
87277 TTCAAAAATTAATAAGTAAGCGATTTAAAAAATAAATCTGTTCATCAAACTAGTTCAAAGAATTA
315 TTCAAAAATTAATAAG--A--GATTTAAAAAATATATCTGTTTACCAAACCAGTTC-AA-AAGTA
* * * * * *
87342 TAACTATTTGAACAATTGTA-TACTTCAAATTGTTATAACCTTTTGTTT-TTCACAAAACAATTA
374 TGA-TA--T----AA-T-TACTATTTCAAATTGCTATAACCTTTTGTTTAGTCATAAAACAATTG
*** * * * * * *
87405 TTTTTGTTCATACAAGCTTATTTAAAATAAAATAATACAAATATAATAATATTCTAAAAATTAAT
430 TTTCAATTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAACATTTTAAAAATTAAT
* * *
87470 AA-CTAAGAGAATT-AAAAATAAATTTGTTTGA
495 AAGC-AAGAGATTTAAAAAATAAATCTATTT-A
* * * * * * * *
87501 C-AAACCAGTTCAAATATTTAAGACTATATGAACAATTATCTATTTCAAAA-TGTTATGACCTTT
1 CTGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATTTATTT-AAAATTGTTATGACCATT
* * * * ** ** * ** *
87564 TGCTTTGTCACAAAACACA-T-TTTCAATTCATACTAGGTGATTTGAAATAAAATAA-AATGAAT
65 TGTTTTGTCATAAAACA-ATTGTTTTAGTTCATAAAAACTTA-TCAAAATAAAATAATAAT-ACT
* * * * ** * *
87626 TTATTAATATTGCAAAAATTAATAAGTAAGATATTTAAAAAA-ATATTTCTGTTTACCTCACCAA
127 TT-TTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATA-AATT-AGTTTACCAAATCAG
* * * *
87690 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCA
189 TTCAAATAATTATGACCATTTGAAAAACTATCTATTTCAAATCATTATTA-CTTTTGTTTTGTCA
* *** * * * *
87755 TAAAACAAATGTTTTTGTTCATATAAGTTT-GTTCATAATAAAGTAATACTAATCTATTAATATT
253 TAAAAC-ATTGTTTTTCAACATATAAGTTTATTTGA-AATAAAATAATACTAATTTATTAATATT
* * * * * *
87819 TCAAAAATTAATAATAGATTTAAAAAATA-ATTATATTTAGCAAACCAATTCAAATAATTATGAC
316 TCAAAAATTAATAAGAGATTTAAAAAATATA-TCTGTTTACCAAACCAGTTC-AA-AAGTATG--
* *** * * * * *
87883 TATTTGATAAATTATTTATTTCAAATCATTCTGACTTTTTGTTCTA-TTATAAAACATTTGTTTC
376 -A--T-AT-AATTA-CTATTTCAAATTGCTATAACCTTTTGTT-TAGTCATAAAACAATTGTTTC
** * * * * * * * *
87947 TGTTCATACATGCTTATTCAGATTAAAATAATATTAATTTATTAATATTTCAACAATTAATAAGT
434 AATTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAACATTTTAAAAATTAATAAGC
* * * *
88012 AA-AAATTTTAAAAAATAAATATGTCTA
499 AAGAGA-TTTAAAAAATAAATCTATTTA
* * * * * * * * *
88039 -TCGAACTAGATCAAATGGTCATGATTATTTGAATAATTATCTATTTCAAATCGTTATGACCCTT
1 CT-GAACAAGTTCAAATAGTTATGACTATTTGAATAATTATTTATTTAAAATTGTTATGACCATT
* * * ** * ** * ** *
88103 TCTTTTGTCATAAAAGATTTGTTTCGGTTCATATAAGTTTATTCGAAATAAAATAATACCAGTTT
65 TGTTTTGTCATAAAACAATTGTTTTAGTTCATAAAAACTTA-TCAAAATAAAATAATAATACTTT
* * * * * * *
88168 ATTAATATTCCAAAAATTAATAATTAAGAGATTTAAAAAA-GAATCTA-TTTATCGAATAAGTTT
129 -TTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAAT-TAGTTTACCAAATCAGTTC
* * * * * * *** * *
88231 AAATGATTATGACTATTTGAACAATTATTTATTTGAAATTGCTATAACATTTTGTTTTGACATAA
192 AAATAATTATGACCATTTGAAAAACTATCTATTTCAAATCATTATTAC-TTTTGTTTTGTCATAA
* *** * * ** * *
88296 AATAATT-TTTTCTGTTCATACAAGCTTATTTCTAATAAAATAATACAAAATTATTAATA-TT-A
256 AA-CATTGTTTT-TCAACATATAAGTTTATTTGAAATAAAATAATACTAATTTATTAATATTTCA
* * * * * *
88358 AGACAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTCATCAAACAAGTTCAAATGTTATGA
319 A-A-AATTAATAAG----AGATTTAAAAAATATATCTGTTTACCAAACCAGTTCAAAAG-TATGA
* * * * * * * *
88423 CTTTTTGAACAATTATTTATTTCAAATTGTTATGACTTTTTGTTTTGTCACT-AAATAATCGTTT
377 -----T--ATAATTA-CTATTTCAAATTGCTATAACCTTTTGTTTAGTCA-TAAAACAATTGTTT
* * * ** * * * *
88487 -ACGTTCATAAAAGGTTATTCGGATTAAAATAATACTAA-TTATTAATATTTTGACAATTAATAA
433 CA-ATTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAACATTTTAAAAATTAATAA
* * * *
88550 GTAAAAGATTTAAAAAATAAATATGTTTA
497 GCAAGAGATTTAAAAAATAAATCTATTTA
* * * * * * * ** **
88579 -TCGAATAAATTGAAATAATCATGATTATTTGAATAATAAACTATTTCAAAA-CATTATGACC-T
1 CT-GAACAAGTTCAAATAGTTATGACTATTTGAATAATTATTTATTT-AAAATTGTTATGACCAT
* * * * * * ** * *
88641 TTTTTTTGTAATAAAACAA-CGATTTCAATTCA-AATAAGCTTATTTGAAATAAAATAATACTAA
64 TTGTTTTGTCATAAAACAATTG-TTTTAGTTCATAA-AAACTTA-TCAAAATAAAATAATAATAC
* ** * * * ** *
88704 TTTATTAATATTACTTAAATTAATGAGTAAGAGACTTAAAAAATAAATTTGTTTACTGAATAAGC
126 TTT-TTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTAGTTTACCAAATCAG-
** * * ** * * *
88769 TT-AAATAGCTATGACTATCT-AAATAGTTATCTATTTTAAAACATTATGAACTTTTGTTTTGTC
189 TTCAAATAATTATGACCATTTGAAA-AACTATCTATTTCAAATCATTAT-TACTTTTGTTTTGTC
* * * * ** * * *
88832 ATAAAACAATAGGTTCT-ATTCATGCAAGCTTATTTCAAATAAAATAATA-TAAATTGATTAATA
252 ATAAAAC-ATTGTTTTTCA-ACATATAAGTTTATTTGAAATAAAATAATACT-AATTTATTAATA
* * * * * * *
88895 TTACAAAAATTAATAAGTAAAAATTTAAAAAATAAATCTGTTTTCTACA-CACGTTCAAATAATT
314 TTTCAAAAATTAATAAG---AGATTTAAAAAATATATCTGTTTACCAAACCA-GTTC-AA-AAGT
* * * * * * *
88959 AT-ATCTATTTGAACAATTATCCATTTCAATTTGTTATGATCTTTTGTTTTGTCATAAACCAATT
373 ATGA--TA--T----AATTA-CTATTTCAAATTGCTATAACCTTTTGTTTAGTCATAAAACAATT
*** * * * *
89023 GTTTTTGTTCATAAAAGCTTATTT-G-CTATAAATAATACTAATTTATTAAAATTTCAAAAATTA
429 GTTTCAATTCATACAAGCTTATTTAGAATA-AAATAATACTAATTTATTAACATTTTAAAAATTA
* * * * *
89086 ATAAGTAAAATATTTAAAAAATAAAATATGTTTA
493 ATAAGCAAGAGATTTAAAAAAT-AAATCTATTTA
* ** * * * * * *
89120 CTGAGCCGGTTCGAATAGTTATGACTATTTGAACAATTATTTATTTCAAATCGTTATGATCTTTT
1 CTGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATTTATTTAAAATTGTTATGACCATTT
* * ** * * ** *
89185 GCCTTTT-T-ATAAAA-AATTGTTTCTACTT-ATACAAGTTTATTCGAAATAGAATAATACCAAT
66 G--TTTTGTCATAAAACAATTGTTT-TAGTTCATAAAAACTTA-TCAAAATAAAATAATAATACT
* ** * *
89246 TTATTAATA-TTCTAAGAATTAATAAGTTGGAGATTTAAAAAATAAA-TATGTTCACTAAA-CAA
127 TT-TTAATATTTC-AAAAATTAATAAGTAAGAGATTTAAAAAATAAATTA-GTTTACCAAATC-A
* * * * * * ** * * *
89308 GTTCAAATAGTCAAGTCTATTCGAACTATTAGCTATTTCAAATCGTTATTTTA-TTTTGTTTTGT
188 GTTCAAATAATTATGACCATTTGAAAAACTATCTATTTCAAATCATTA--TTACTTTTGTTTTGT
** * * * * ** * * * *
89372 TGTAAAACAAT-TATTTCTATTCATACAAAATTA-TTCAGAATAAAGTAGTACCAATTTATTAAT
251 CATAAAACATTGTTTTTC-A-ACATATAAGTTTATTTGA-AATAAAATAATACTAATTTATTAAT
* * * * * *
89435 ATTTCAAAAATTAAGAACAGATTTAAAAAGCTAAATCTATTTATCAAACCAGTTCAAATAGTTAT
313 ATTTCAAAAATTAATAAGAGATTTAAAAA-ATATATCTGTTTACCAAACCAGTTCAAA-AG-TAT
* * * * * * ** **
89500 GACTATTTGAACAATTATTTATCTAAAATTGTTATGATCTTTT-TTTTCTCATAAAGTAATTGTT
375 GA-TA--T----AATTA-CTATTTCAAATTGCTATAACCTTTTGTTTAGTCATAAAACAATTGTT
* * *
89564 TCTATTCATACAAGCTTATTTAG-----AGT-A-A--AA--TATT-GC----T--AAATTAATAA
432 TCAATTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAACATTTTAAAAATTAATAA
* * *
89611 GTAAGAGATTTAAAAAATAAATATGTTTA
497 GCAAGAGATTTAAAAAATAAATCTATTTA
* * * * ** * ** *
89640 CTGAACTAGTTCAAATAGTTAAGACTATTAGAATGATTAGCTATTTCAAATCATTTTGACCATTT
1 CTGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATTTATTTAAAATTGTTATGACCATTT
* * * * * * * ** ** * *
89705 GTTTAGTCATAAAATAATTGTTTCAATTTAT-ACAA-TTATCTATTTAAAATTGTTATGACATTT
66 GTTTTGTCATAAAACAATTGTTTTAGTTCATAAAAACTTATCAAAATAAAATAATAAT-ACTTTT
* * * * *
89768 T-AT-TTTAACATAAAA-TAATTTTTTCAATTCATA-AAATCTTATCCAAAATAAAATAATGTTA
130 TAATATTT--CA-AAAATTAA-----T-AAGT-A-AGAGAT-TTA--AAAAATAAATTAGT-TTA
* * ** * * * ** *** ** *
89829 CTTTATTAAT-ATTTC-AA-AATT-TGAGAAGTTGGAGATTTAAAAAAAT-AAATCAGT-TTATC
180 C--CA--AATCAGTTCAAATAATTATGACCATTTGAAAAACTATCTATTTCAAATCATTATTA-C
* ** * * * * * ** **
89888 GAATCAGTTATGACTATTTAAACAATTATTTATTCCAAATCGTTATGACTTTTTATTTTGCCATA
240 --TTTTGTTTTGTC-A-TAAAAC-ATTGTTT-TT-C-AA-C-ATAT-A-AGTTTA-TTTGAAATA
* * * * ** **
89953 AAACAAT--TGATTTTGTTCACACAAGTTTATTTGGATTAAAA-TAATATTA-ATTT-ATTAATA
292 AAATAATACT-AATTTATT-----AA---TATTT-CA--AAAATTAATAAGAGATTTAAAAAATA
* * ** ** * ** * *
90013 T-TTTGACAATTAAAAAGTAAAAGGTTTTCAAAA-TA-AATATGTTTACTGAACAAGTTCAAATA
345 TATCTG---TTTACCAA--ACCA-G--TTCAAAAGTATGATATAATTACT-----ATTTCAAATT
*
90075 G-TCATAA-CTATTTGAATAATTA-TCTATTTCAAATTGCTATGACCTTTTGTTTCGTCATAAAA
397 GCT-ATAACCT-TTTG--T--TTAGTC-A--T-AAA--AC-A--A----TTG--T--T--T----
* * * **
90137 CAACTGTATTAGTTCACATAGGCTTATTTAAAATAAAATAATACTAATTTATTAATATTCCAAAA
433 CAA---T-TCA--T-ACA-A-GCTTATTTAGAATAAAATAATACTAATTTATTAACATTTTAAAA
* * * * ** *
90202 ATTAATGAGTAAGAGATTTAAAATATGAAGATGTTTA
489 ATTAATAAGCAAGAGATTTAAAAAATAAATCTATTTA
* * * * *
90239 -TCGAACAAGTTCAAAT-GATTATGACTATTTGAATAATTATCTATTTCAAA-CGTTATGAGCTT
1 CT-GAACAAGTTCAAATAG-TTATGACTATTTGAATAATTATTTATTTAAAATTGTTATGACCAT
* * * *
90301 TTGTTGTGTCATAAAATAATTG-TTTATGTTCATAAAAGCTTATTTC-GAATAAAATAAT-ATAA
64 TTGTTTTGTCATAAAACAATTGTTTTA-GTTCATAAAAACTTA--TCAAAATAAAATAATAAT-A
* * * * * * *
90363 ATTTATAAATATTTCAAAAATTAATAAGCAA-AAATTTAAAAAATAAATTCGTTTTCTAAA-CAT
125 CTTT-TTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTAGTTTACCAAATCA-
* * * * * * *
90426 ATTCAAATAGTTATGGCTATTTGAATAATTATCTATTTCAAAT-AGTTATGACCTTTTGTTTTGT
188 GTTCAAATAATTATGACCATTTGAAAAACTATCTATTTCAAATCA-TTATTA-CTTTTGTTTTGT
* * * * * * *
90490 CATAAACCAATTGTTTCT-ATTCATACAAGTGTATTTGAAATAAAATAATAATATTTTATTAATA
251 CATAAAAC-ATTGTTTTTCA-ACATATAAGTTTATTTGAAATAAAATAATACTAATTTATTAATA
* * * * * * * *
90554 TTCCAAAAATTAATAAGTAAAAATTTTAAAAAATAAATCTGTTTACCGAGCAAGTTCATATTATT
314 TTTCAAAAATTAATAAG---AGA-TTTAAAAAATATATCTGTTTACCAAACCAGTTCA-A-AAGT
* * * * ** * *
90619 ATGATTATTTGAACAATTATTTATTTCAAATAGTTATGATTTTTTGTTTTGTCATAAAACAATTC
373 ATGA-TA--T----AATTA-CTATTTCAAATTGCTATAACCTTTTGTTTAGTCATAAAACAATTG
* * * * * * *
90684 TTTCTATTTATACAAGTTTATTTAGATTAAAATAATACTATTTTATCAATATTTTAAAAATTAAT
430 TTTCAATTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAACATTTTAAAAATTAAT
* * *
90749 AGGTAGGAGATTTAAAAAAATAAATCTATTTA
495 AAGCAAGAGATTT-AAAAAATAAATCTATTTA
* * * * * *
90781 CCGAACAAGTTTAAATAGATT-TGACTATTTGAACAATTATCTATTTAAAGTTGTTATGACCTTT
1 CTGAACAAGTTCAAATAG-TTATGACTATTTGAATAATTATTTATTTAAAATTGTTATGACCATT
* * * *
90845 TGTCTTGTCACAAAACAATTGTTTCAGTTCATAAAAACTTATCTAAAACAAAATAATAATACTTT
65 TGTTTTGTCATAAAACAATTGTTTTAGTTCATAAAAACTTATC-AAAATAAAATAATAATAC-TT
* * * * *
90910 TTTAATATTTCAAAAATTAATAAGCAAGAGATTTAAAAACTAAAGTT-TTTTTCCAAACCAGTTC
128 TTTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAA-TTAGTTTACCAAATCAGTTC
* * * * * * *
90974 AAATAGTTATGACTATTTGAAGAACTATCAATCTCAAATCATTATGA-TCTTTGTTTTCTCATAA
192 AAATAATTATGACCATTTGAAAAACTATCTATTTCAAATCATTATTACT-TTTGTTTTGTCATAA
* * * * *
91038 AACAATTGTTTTTCATCAT-TAAGCTTATTCG-GATAAAAATAATACTAATTTAATAATATTTCA
256 AAC-ATTGTTTTTCAACATATAAGTTTATTTGAAAT-AAAATAATACTAATTTATTAATATTTCA
* * *
91101 AAAATTAATAAGAGATTTAAAAAAT-TAATGTGTTTACCGAACTAGTTC-AAA-TA-G-T-T-A-
319 AAAATTAATAAGAGATTTAAAAAATAT-ATCTGTTTACCAAACCAGTTCAAAAGTATGATATAAT
* * * * *
91158 T-CTATTTCAAATTGCTCTGACCTTTTGTTTAGTTATACAATAATTGTTTCAATTCATACAAGCT
383 TACTATTTCAAATTGCTATAACCTTTTGTTTAGTCATAAAACAATTGTTTCAATTCATACAAGCT
* ** * *
91222 TATTTGGAATAAAATAATACTAATTTATTAACATTAAAAAAATTAGTAAGCACGAGATTTGAAAA
448 TATTTAGAATAAAATAATACTAATTTATTAACATTTTAAAAATTAATAAGCAAGAGATTT-AAAA
*
91287 TATAAATCTATTTA
512 AATAAATCTATTTA
* **
91301 CTGAACAAGTTCAAATAGTTATGACTATTTAAATAATTATTTATTTAAAATCATT-TGACCATTT
1 CTGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATTTATTTAAAATTGTTATGACCATTT
* * * * * *
91365 GTTTTATCATAAAATAGTTGTTTTAGTTCATAAAATCTTATCCAAATAAAATAATACTACTTTAT
66 GTTTTGTCATAAAACAATTGTTTTAGTTCATAAAAACTTATCAAAATAAAATAATAATACTTT-T
* * *
91430 TAATATTTCAAAAGTTAATAAGTAAAAGATTTAAAAAATAAATTAGTTTACCGAATCAGTTCAAA
130 TAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTAGTTTACCAAATCAGTTCAAA
*
91495 TAATTATGGCCATTTGAAAAACTATCTATTTCAAATCATTATTACCTTTTGTTTTGTCATAAAAC
195 TAATTATGACCATTTGAAAAACTATCTATTTCAAATCATTATTA-CTTTTGTTTTGTCATAAAAC
* * *
91560 ATTG-TTTTCAACATACAAGTTTATTTGAAATAAAATAATACTAATTCATTAATATTTCAAGAAT
259 ATTGTTTTTCAACATATAAGTTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAAAAAT
91624 TAATAAGAGATTTAAAAAATATATCTGTTTACCAAACCAGTTCAAAAAGTTATGACTATATGAAT
324 TAATAAGAGATTTAAAAAATATATCTGTTTACCAAACCAGTTC-AAAAG-TATG-----AT--AT
* * *
91689 AATTACCTATTTTAAATTGTTATAACCTTTTGTTCTA-TCATAAAACAATTGTTT-ATATCCATA
380 AATTA-CTATTTCAAATTGCTATAACCTTTTGTT-TAGTCATAAAACAATTGTTTCA-ATTCATA
* * *
91752 CAAGCTTATTCAGAATAAAATAATACTAATTTAGT-ACTATTTTAAAAATTAATAA-CTAAGATA
442 CAAGCTTATTTAGAATAAAATAATACTAATTTATTAAC-ATTTTAAAAATTAATAAGC-AAGAGA
* *
91815 TTTAAAAAATAAATCTGTTTG
505 TTTAAAAAATAAATCTATTTA
* * * * *
91836 CTGAACTAGTTCAAACAGTTAAGACTATATGAATAATTATTTATTTCAAATTGTTATGACCATTT
1 CTGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATTTATTTAAAATTGTTATGACCATTT
* * * * * * * *
91901 GTTTTGTCATAAAACAATTATTTTAGCTCATACAAGCTTATTCGAAATAGAATAAAAATAATTTT
66 GTTTTGTCATAAAACAATTGTTTTAGTTCATAAAAACTTA-TCAAAATAAAATAATAATACTTTT
* * * **
91966 TAATATTTCAAAAATT--T-A-TAAGGGATTTAGAAAAT-AATTATGTTTACCAAATTAGTTTGA
130 TAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTA-GTTTACCAAATCAGTTCAA
* * * *
92026 ATAATTAT-AACATTT-AAATAATTATTTATTTCAAATCGTTATTACTTTATGTTTTGTCATAAA
194 ATAATTATGACCATTTGAAA-AACTATCTATTTCAAATCATTATTACTTT-TGTTTTGTCATAAA
* ** * * *
92089 ATAATTGTTTTTGTTA-ATATAAGTTTATTTTAAAGAAAATAACACTAATTTATTAATATTT-AG
257 A-CATTGTTTTT-CAACATATAAGTTTATTTGAAATAAAATAATACTAATTTATTAATATTTCA-
* * * * * * * * *
92152 AAAATTAATCAATAAGAGAATTAAAAAGTAAATTTGCTTATCAAACTATTTCAAATAGTTTTGAC
319 AAAA-T--T-AATAAGAGATTTAAAAAATATATCTGTTTACCAAACCAGTTCAAA-AG-TATG--
* *** * * *
92217 TATTTGAATAATTATCTATTTCTAATCATTATAACATTTTAGTTT-GTCATCAAACAATTGGTTC
376 -A--T--ATAATTA-CTATTTCAAATTGCTATAACCTTTT-GTTTAGTCATAAAACAATTGTTTC
* * ** * * * * * ** * *
92281 TATTCATACTATTTTATTCAGAATAAAATAACATTAATTTAATAATATTTCGAAACTTAATAACC
434 AATTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAACATTTTAAAAATTAATAAGC
* * * * *
92346 GAGAAAATTAAAAAATAAATCTAATTG
499 AAGAGATTTAAAAAATAAATCTATTTA
* * ** * * * * * * *
92373 CCGAACCAA-TTCAAATAGTTAAGACTACATGAATGATTATCTATGTCAAATTATTATAACCTTT
1 CTGAA-CAAGTTCAAATAGTTATGACTATTTGAATAATTATTTATTTAAAATTGTTATGACCATT
* *
92437 TGTTTTATCGTAAAACAATTGTTTT
65 TGTTTTGTCATAAAACAATTGTTTT
92462 GTCCGTACAA
Statistics
Matches: 4238, Mismatches: 884, Indels: 747
0.72 0.15 0.13
Matches are distributed among these distances:
517 18 0.00
518 206 0.05
519 76 0.02
520 236 0.06
521 36 0.01
522 6 0.00
523 3 0.00
524 6 0.00
525 79 0.02
526 102 0.02
528 21 0.00
529 149 0.04
530 17 0.00
531 57 0.01
532 51 0.01
533 55 0.01
534 13 0.00
535 75 0.02
536 231 0.05
537 397 0.09
538 389 0.09
539 280 0.07
540 414 0.10
541 506 0.12
542 151 0.04
543 119 0.03
544 84 0.02
545 21 0.00
546 10 0.00
547 13 0.00
548 7 0.00
549 10 0.00
550 6 0.00
551 1 0.00
552 7 0.00
553 3 0.00
554 1 0.00
555 1 0.00
556 2 0.00
558 2 0.00
560 2 0.00
562 3 0.00
564 2 0.00
566 2 0.00
567 1 0.00
568 1 0.00
569 11 0.00
570 7 0.00
571 3 0.00
572 13 0.00
573 4 0.00
574 8 0.00
575 6 0.00
576 25 0.01
577 5 0.00
578 1 0.00
579 16 0.00
580 14 0.00
581 12 0.00
582 2 0.00
583 2 0.00
585 3 0.00
586 6 0.00
587 16 0.00
588 5 0.00
589 24 0.01
590 17 0.00
591 3 0.00
592 7 0.00
593 5 0.00
594 1 0.00
595 2 0.00
596 1 0.00
597 3 0.00
598 34 0.01
599 78 0.02
600 12 0.00
601 13 0.00
602 4 0.00
603 3 0.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.40
Consensus pattern (525 bp):
CTGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATTTATTTAAAATTGTTATGACCATTT
GTTTTGTCATAAAACAATTGTTTTAGTTCATAAAAACTTATCAAAATAAAATAATAATACTTTTT
AATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTAGTTTACCAAATCAGTTCAAAT
AATTATGACCATTTGAAAAACTATCTATTTCAAATCATTATTACTTTTGTTTTGTCATAAAACAT
TGTTTTTCAACATATAAGTTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTA
ATAAGAGATTTAAAAAATATATCTGTTTACCAAACCAGTTCAAAAGTATGATATAATTACTATTT
CAAATTGCTATAACCTTTTGTTTAGTCATAAAACAATTGTTTCAATTCATACAAGCTTATTTAGA
ATAAAATAATACTAATTTATTAACATTTTAAAAATTAATAAGCAAGAGATTTAAAAAATAAATCT
ATTTA
Found at i:91820 original size:356 final size:356
Alignment explanation
Indices: 91150--92681 Score: 1281
Period size: 356 Copynumber: 4.3 Consensus size: 356
91140 AACTAGTTCA
* *** * * * * * * *
91150 AATAGTTATCTATTTCAAATTGCTCTGACCTTTTGTTTAGTTATACAATAATTGTTTCAATTCAT
1 AATAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAATTGTTTC-ACTCAT
* * ** *
91215 ACAAGCTTATTTGGAATAAAATAATACTAATTTATTAACATTAAAAAAATTAGTAAGCACGAGAT
65 ACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAAT-A--ACGAGAT
* ** * * * *
91280 TTGAAAATATAAATCTATTTACTGAACAAGTTCAAATAGTTATGACTATTTAAATAATTATTTAT
127 TT-AAAAAATAAATCTATTTACCAAACCAGTTCAAAAAGTTATGACTATATAAATAATTATCTAT
* * * * * * * * *
91345 TTAAAATCATT-TGACCATTTGTTTTATCATAAAATAGTTGTTTTAGTTCATAAAATCTTATCCA
191 TTCAAATCATTATAACCTTTTGTTTTATCATAAAACAATTGTTTTA-TCCATACAAGCTTATTCA
* * * *
91409 AATAAAATAATACTACTTTATTAATATTTCAAAAGTTAATAAGTAAAAGATTTAAAAAATAAATT
255 AATAAAATAATACTAATTTATTAATATTTTAAAAATTAATAA-TAAGAGATTTAAAAAATAAATT
* * * * *
91474 AGTTTACCGAATC-AGTTCAAATAATTATGGCCATTTG
319 TGTTTACCGAATCTAGTTCAAATAGTTAAGACTATTTG
* * * *
91511 AAAAACTATCTATTTCAAATCATTATTACCTTTTGTTTTGTCATAAAAC-ATTGTTTTCA-ACAT
1 AATAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAATTG-TTTCACTCAT
* * *
91574 ACAAGTTTATTTGAAATAAAATAATACTAATTCATTAATATTTCAAGAATTAATAA-GAGATTTA
65 ACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAACGAGATTTA
* * * * *
91638 AAAAATATATCTGTTTACCAAACCAGTTCAAAAAGTTATGACTATATGAATAATTACCTATTTTA
130 AAAAATAAATCTATTTACCAAACCAGTTCAAAAAGTTATGACTATATAAATAATTATCTATTTCA
** *
91703 AATTGTTATAACCTTTTGTTCTATCATAAAACAATTGTTTATATCCATACAAGCTTATTCAGAAT
195 AATCATTATAACCTTTTGTTTTATCATAAAACAATTGTTT-TATCCATACAAGCTTATTCA-AAT
* * * *
91768 AAAATAATACTAATTTAGTACTATTTTAAAAATTAATAACTAAGATATTTAAAAAATAAATCTGT
258 AAAATAATACTAATTTATTAATATTTTAAAAATTAATAA-TAAGAGATTTAAAAAATAAATTTGT
* * * *
91833 TTGCTGAA-CTAGTTCAAACAGTTAAGACTATATG
322 TTACCGAATCTAGTTCAAATAGTTAAGACTATTTG
* ** * * * *
91867 AATAATTATTTATTTCAAATTGTTATGACCATTTGTTTTGTCATAAAACAATTATTTTAGCTCAT
1 AATAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAATTGTTTCA-CTCAT
* * * * * *
91932 ACAAGCTTATTCGAAATAGAATAAAAATAATTT-TTAATATTTCAAAAATTTATAA-GGGATTTA
65 ACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAACGAGATTTA
* * * * ** * * * * *
91995 GAAAATAATTATGTTTACCAAATTAGTTTGAATAA-TTATAAC-ATTTAAATAATTATTTATTTC
130 AAAAATAAATCTATTTACCAAACCAG-TTCAAAAAGTTATGACTATATAAATAATTATCTATTTC
* * * * * ** * * *
92058 AAATCGTTATTA-CTTTATGTTTTGTCATAAAATAATTGTTTTTGTTAATATAAGTTTATTTTAA
194 AAATCATTATAACCTTT-TGTTTTATCATAAAACAATTG-TTTTATCCATACAAGCTTA-TTCAA
* * * *
92122 AGAAAATAACACTAATTTATTAATA-TTTAGAAAATTAATCAATAAGAGAATTAAAAAGTAAATT
256 ATAAAATAATACTAATTTATTAATATTTTA-AAAATTAAT-AATAAGAGATTTAAAAAATAAATT
* * * * **
92186 TGCTTATC-AAACTATTTCAAATAGTTTTGACTATTTG
319 TGTTTACCGAATCTAGTTCAAATAGTTAAGACTATTTG
* * * * *
92223 AATAATTATCTATTTCTAATCATTATAACATTTTAG-TTTGTCATCAAACAATTGGTTCTATTCA
1 AATAATTATCTATTTCAAATCATTATAACCTTTT-GTTTTGTCATAAAACAATTGTTTC-ACTCA
* ** * * * * * *
92287 TACTATTTTA-TTCAGAATAAAATAACATTAATTTAATAATATTTCGAAACTTAATAACCGAGAA
64 TACAAGCTTATTTGA-AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAA-CGAG--
* * * * * * * * * *
92351 AATTAAAAAATAAATCTAATTGCCGAACCAATTCAAATAGTTAAGACTACATGAATGATTATCTA
125 ATTTAAAAAATAAATCTATTTACCAAACCAGTTCAAAAAGTTATGACTATATAAATAATTATCTA
* * * * *
92416 TGTCAAATTATTATAACCTTTTGTTTTATCGTAAAACAATTGTTTTGTCCGTACAAGCTTATT-A
190 TTTCAAATCATTATAACCTTTTGTTTTATCATAAAACAATTGTTTTATCCATACAAGCTTATTCA
* * * * *
92480 GGATTTAAATAATACTAATTCAATAATGTTTTAAAAA-T--TAAT-A-AGATTTAAAAAATAAAT
255 --AATAAAATAATACTAATTTATTAATATTTTAAAAATTAATAATAAGAGATTTAAAAAATAAAT
* * * * *
92540 TTTTTTATCGAAT-AAGTTCAAATGGTTAAGACTATTAG
318 TTGTTTACCGAATCTAGTTCAAATAGTTAAGACTATTTG
* * * *
92578 AATAATTATCTATTTCAAATCGTTCTAACCTTTTGTTTAGTTATAAAACAATTGTTTCAGCTCAT
1 AATAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAATTGTTTCA-CTCAT
** *
92643 ACAAGCTTATTCAAAATAAATTAATACTAATTTATTAAT
65 ACAAGCTTATTTGAAATAAAATAATACTAATTTATTAAT
92682 TACTATTTGA
Statistics
Matches: 921, Mismatches: 217, Indels: 72
0.76 0.18 0.06
Matches are distributed among these distances:
354 61 0.07
355 181 0.20
356 336 0.36
357 87 0.09
358 38 0.04
359 52 0.06
360 13 0.01
361 103 0.11
362 46 0.05
363 4 0.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.40
Consensus pattern (356 bp):
AATAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAATTGTTTCACTCATA
CAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAACGAGATTTAA
AAAATAAATCTATTTACCAAACCAGTTCAAAAAGTTATGACTATATAAATAATTATCTATTTCAA
ATCATTATAACCTTTTGTTTTATCATAAAACAATTGTTTTATCCATACAAGCTTATTCAAATAAA
ATAATACTAATTTATTAATATTTTAAAAATTAATAATAAGAGATTTAAAAAATAAATTTGTTTAC
CGAATCTAGTTCAAATAGTTAAGACTATTTG
Found at i:91889 original size:181 final size:179
Alignment explanation
Indices: 91150--92681 Score: 1162
Period size: 181 Copynumber: 8.6 Consensus size: 179
91140 AACTAGTTCA
* * * * * * * * * *
91150 AATAGTTATCTATTTCAAATTGCTCTGACCTTTTG-TTTAGTTATACAATAATTGTTTCAATTCA
1 AATAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTA-TCATAAAACAATTGTTT-TATCCA
** * ** * * *
91214 TACAAGCTTATTTGGAATAAAATAATACTAATTTATTAACATTAAAAAAATTAGTAAGCACGAGA
64 TACAAGCTTATTCAGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAA-TAAGAGA
* * * * * *
91279 TTTGAAAATATAAATCTATTTACTGAACAAGTTCAAATAGTTATGACTATTTA
128 TTT-AAAAAATAAATCTGTTTACCGAACTAGTTCAAATAGTTAAGACTATTTG
* * * * * * * *
91332 AATAATTATTTATTTAAAATCATT-TGACCATTTGTTTTATCATAAAATAGTTGTTTTAGTTCAT
1 AATAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTATCATAAAACAATTGTTTTA-TCCAT
* * * * * *
91396 AAAATCTTATCCA-AATAAAATAATACTACTTTATTAATATTTCAAAAGTTAATAAGTAAAAGAT
65 ACAAGCTTATTCAGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAA-TAAGAGAT
* * * *
91460 TTAAAAAATAAAT-TAGTTTACCGAA-TCAGTTCAAATAATTATGGCCATTTG
129 TTAAAAAATAAATCT-GTTTACCGAACT-AGTTCAAATAGTTAAGACTATTTG
* * * * * *
91511 AAAAACTATCTATTTCAAATCATTATTACCTTTTGTTTTGTCATAAAAC-ATTGTTTTCA-ACAT
1 AATAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTATCATAAAACAATTGTTTT-ATCCAT
* * * *
91574 ACAAGTTTATT-TGAAATAAAATAATACTAATTCATTAATATTTCAAGAA-T--TAATAAGAGAT
65 ACAAGCTTATTCAG-AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAATAAGAGAT
* * * * * *
91635 TTAAAAAATATATCTGTTTACCAAACCAGTTCAAAAAGTTATGACTATATG
129 TTAAAAAATAAATCTGTTTACCGAACTAGTTCAAATAGTTAAGACTATTTG
* * * *
91686 AATAATTACCTATTTTAAATTGTTATAACCTTTTGTTCTATCATAAAACAATTGTTTATATCCAT
1 AATAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTATCATAAAACAATTGTTT-TATCCAT
* * * *
91751 ACAAGCTTATTCAGAATAAAATAATACTAATTTAGTACTATTTTAAAAATTAATAACTAAGATAT
65 ACAAGCTTATTCAGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAA-TAAGAGAT
* * * *
91816 TTAAAAAATAAATCTGTTTGCTGAACTAGTTCAAACAGTTAAGACTATATG
129 TTAAAAAATAAATCTGTTTACCGAACTAGTTCAAATAGTTAAGACTATTTG
* * * * * * *
91867 AATAATTATTTATTTCAAATTGTTATGACCATTTGTTTTGTCATAAAACAATTATTTTAGCTCAT
1 AATAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTATCATAAAACAATTGTTTTATC-CAT
* * * *
91932 ACAAGCTTATTC-GAAATAGAATAAAAATAATTT-TTAATATTTCAAAAATT--T-ATAAGGGAT
65 ACAAGCTTATTCAG-AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAATAAGAGAT
* * * * * ** * *
91992 TTAGAAAATAATTATGTTTACCAAATTAGTTTGAATAATTATA-AC-ATTTA
129 TTAAAAAATAAATCTGTTTACCGAACTAGTTCAAATAGTTA-AGACTATTTG
* * * * * **
92042 AATAATTATTTATTTCAAATCGTTATTA-CTTTATGTTTTGTCATAAAATAATTGTTTTTGTTAA
1 AATAATTATCTATTTCAAATCGTTATAACCTTT-TGTTTTATCATAAAACAATTG-TTTTATCCA
* * * * *
92106 TATAAGTTTATTTTA-AAGAAAATAACACTAATTTATTAATATTT-AGAAAATTAATCAATAAGA
64 TACAAGCTTA-TTCAGAATAAAATAATACTAATTTATTAATATTTCA-AAAATTAAT-AATAAGA
* * * * * * * **
92169 GAATTAAAAAGTAAATTTGCTTATCAAACTATTTCAAATAGTTTTGACTATTTG
126 GATTTAAAAAATAAATCTGTTTACCGAACTAGTTCAAATAGTTAAGACTATTTG
* * * * * * *
92223 AATAATTATCTATTTCTAATCATTATAACATTTTAG-TTTGTCATCAAACAATTGGTTCTATTCA
1 AATAATTATCTATTTCAAATCGTTATAACCTTTT-GTTTTATCATAAAACAATT-GTTTTATCCA
* ** * * * * * ** *
92287 TACTATTTTATTCAGAATAAAATAACATTAATTTAATAATATTTCGAAACTTAATAACCGAGAAA
64 TACAAGCTTATTCAGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAA-TAAGAGA
* ** * * * **
92352 ATTAAAAAATAAATCTAATTGCCGAACCAATTCAAATAGTTAAGACTACATG
128 TTTAAAAAATAAATCTGTTTACCGAACTAGTTCAAATAGTTAAGACTATTTG
* * ** * * *
92404 AATGATTATCTATGTCAAATTATTATAACCTTTTGTTTTATCGTAAAACAATTGTTTTGTCCGTA
1 AATAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTATCATAAAACAATTGTTTTATCCATA
* * * * * *
92469 CAAGCTTATT-AGGATTTAAATAATACTAATTCAATAATGTTTTAAAAA-T--TAAT-A-AGATT
66 CAAGCTTATTCA-GAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAATAAGAGATT
* * * * *
92528 TAAAAAATAAATTTTTTTATCGAA-TAAGTTCAAATGGTTAAGACTATTAG
130 TAAAAAATAAATCTGTTTACCGAACT-AGTTCAAATAGTTAAGACTATTTG
* * * *
92578 AATAATTATCTATTTCAAATCGTTCTAACCTTTTG-TTTAGTTATAAAACAATTGTTTCAGCTCA
1 AATAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTA-TCATAAAACAATTGTTTTATC-CA
* *
92642 TACAAGCTTATTCAAAATAAATTAATACTAATTTATTAAT
64 TACAAGCTTATTCAGAATAAAATAATACTAATTTATTAAT
92682 TACTATTTGA
Statistics
Matches: 1067, Mismatches: 238, Indels: 97
0.76 0.17 0.07
Matches are distributed among these distances:
173 4 0.00
174 90 0.08
175 194 0.18
176 72 0.07
177 49 0.05
178 16 0.01
179 98 0.09
180 173 0.16
181 344 0.32
182 27 0.03
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.40
Consensus pattern (179 bp):
AATAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTATCATAAAACAATTGTTTTATCCATA
CAAGCTTATTCAGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAATAAGAGATTT
AAAAAATAAATCTGTTTACCGAACTAGTTCAAATAGTTAAGACTATTTG
Found at i:92309 original size:537 final size:534
Alignment explanation
Indices: 91212--92634 Score: 1362
Period size: 537 Copynumber: 2.7 Consensus size: 534
91202 TGTTTCAATT
** * * * *
91212 CATACAAGCTTATTTGGAATAAAATAATACTAATTTATTAAC-ATTAAAAAAATTAGTAAGCACG
1 CATACAAGCTTATTCAGAATAAAATAATACTAATTTAAT-ACTATTTAAAAAATTAATAA-CAAG
* * * * * *
91276 AGATTTGAAAATATAAATCTATTTACTGAACAAGTTCAAATAGTTATGACTATTTAAATAATTAT
64 AAATTT-AAAAAATAAATCTATTTGCTGAACAAGTTCAAATAGTTAAGACTATATGAATAATTAT
* * * * * *
91341 TTATTTAAAATCATT-TGACCATTTGTTTTATCATAAAATAGTTGTTTTAGTTCATAAAATCTTA
128 TTATTTCAAATTATTATGACCATTTGTTTTATCATAAAACAATTGTTTTAG-TCATACAAGCTTA
* * * *
91405 -TCCAAATAAAATAATACTACTTTATTAATATTTCAAAAGTTAATAAGTAAAAGATTTAAAAAAT
192 TTCCAAATAAAATAAAAATAATTTATTAATATTTCAAAAATT-ATAAGTAAAAGATTTAAAAAAT
* **
91469 AAATTAGTTTACCGAATCAGTTCAAATAATTATGGCCATTTGAAAAACTATCTATTTCAAATCAT
256 AAATTAGTTTACCAAATCAGTTCAAATAATTATGAACATTTGAAAAACTATCTATTTCAAATCAT
* * *
91534 TATTACCTTTTGTTTTGTCATAAAACATTGTTTTCAACATACAAGTTTATTTGAAATAAAATAAT
321 TATTACCTTTTGTTTTGTCATAAAAAATTGTTTTCAACATACAAGTTTATTTGAAAGAAAATAAC
* * * *
91599 ACTAATTCATTAATATTTCAAGAATTAATAAGAGATTTAAAAAATATATCTGTTTACCAAACCAG
386 ACTAATTCATTAATATTTCAAAAATTAATAAGAGAATTAAAAAATAAATCTGCTTACCAAACCAG
** *
91664 TTCAAAAAGTTATGACTATATGAATAATTACCTATTTTAAATTGTTATAACCTTTTGTTCTATCA
451 TTCAAAAAGTTATGACTATATGAATAATTACCTATTTTAAATCATTATAACATTTTGTTCTATCA
*
91729 TAAAACAATTGTTTATATC
516 TAAAACAATTGGTTATATC
* *
91748 CATACAAGCTTATTCAGAATAAAATAATACTAATTTAGTACTATTTTAAAAATTAATAACTAAGA
1 CATACAAGCTTATTCAGAATAAAATAATACTAATTTAATACTATTTAAAAAATTAATAAC-AAGA
* * * *
91813 TATTTAAAAAATAAATCTGTTTGCTGAACTAGTTCAAACAGTTAAGACTATATGAATAATTATTT
65 AATTTAAAAAATAAATCTATTTGCTGAACAAGTTCAAATAGTTAAGACTATATGAATAATTATTT
* * *
91878 ATTTCAAATTGTTATGACCATTTGTTTTGTCATAAAACAATTATTTTAGCTCATACAAGCTTATT
130 ATTTCAAATTATTATGACCATTTGTTTTATCATAAAACAATTGTTTTAG-TCATACAAGCTTATT
* * ** *
91943 CGAAATAGAATAAAAATAATTT-TTAATATTTCAAAAATT-T-A-TAAGGGATTTAGAAAAT-AA
194 CCAAATAAAATAAAAATAATTTATTAATATTTCAAAAATTATAAGTAAAAGATTTAAAAAATAAA
* ** * * *
92003 TTATGTTTACCAAATTAGTTTGAATAATTAT-AACATTT-AAATAATTATTTATTTCAAATCGTT
259 TTA-GTTTACCAAATCAGTTCAAATAATTATGAACATTTGAAA-AACTATCTATTTCAAATCATT
** * *
92066 ATTA-CTTTATGTTTTGTCATAAAATAATTGTTTTTGTTA-ATATAAGTTTATTTTAAAGAAAAT
322 ATTACCTTT-TGTTTTGTCATAAAA-AATTG-TTTT-CAACATACAAGTTTATTTGAAAGAAAAT
* * * *
92129 AACACTAATTTATTAATATTT-AGAAAATTAATCAATAAGAGAATTAAAAAGTAAATTTGCTTAT
383 AACACTAATTCATTAATATTTCA-AAAA-T--T-AATAAGAGAATTAAAAAATAAATCTGCTTAC
* * * * * *
92193 CAAACTATTTCAAATAGTTTTGACTATTTGAATAATTATCTATTTCT-AATCATTATAACATTTT
443 CAAACCAGTTCAAAAAGTTATGACTATATGAATAATTACCTATTT-TAAATCATTATAACATTTT
* * * *
92257 AGTT-TGTCATCAAACAATTGGTTCTATT
507 -GTTCTATCATAAAACAATTGGTTATATC
* ** * * * ** * *
92285 CATACTATTTTATTCAGAATAAAATAACATTAATTTAATAATATTTCGAAACTTAATAACCGAGA
1 CATACAAGCTTATTCAGAATAAAATAATACTAATTTAATACTATTTAAAAAATTAATAA-CAAGA
* * * * * *
92350 AAATTAAAAAATAAATCTAATTGCCGAACCAA-TTCAAATAGTTAAGACTACATGAATGATTATC
65 AATTTAAAAAATAAATCTATTTGCTGAA-CAAGTTCAAATAGTTAAGACTATATGAATAATTATT
* * * * *
92414 TATGTCAAATTATTATAACCTTTTGTTTTATCGTAAAACAATTGTTTT-GTCCGTACAAGCTTAT
129 TATTTCAAATTATTATGACCATTTGTTTTATCATAAAACAATTGTTTTAGT-CATACAAGCTTAT
*** * * * * * * * *
92478 TAGGATTTAAATAATACTAATTCAATAATGTTTTAAAAA-T-TAA-T--AAGATTTAAAAAATAA
193 TCCAAATAAAATAAAAATAATTTATTAATATTTCAAAAATTATAAGTAAAAGATTTAAAAAATAA
** * * * ** * * * * *
92538 ATTTTTTTATCGAATAAGTTCAAATGGTTAAG-ACTATTAGAATAATTATCTATTTCAAATCGTT
258 ATTAGTTTACCAAATCAGTTCAAATAATTATGAAC-ATTTGAAAAACTATCTATTTCAAATCATT
* * * *
92602 CTAACCTTTTGTTTAGTTATAAAACAATTGTTT
322 ATTACCTTTTGTTTTGTCATAAAA-AATTGTTT
92635 CAGCTCATAC
Statistics
Matches: 726, Mismatches: 134, Indels: 55
0.79 0.15 0.06
Matches are distributed among these distances:
530 7 0.01
531 47 0.06
532 42 0.06
533 48 0.07
534 3 0.00
535 100 0.14
536 193 0.27
537 279 0.38
538 7 0.01
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (534 bp):
CATACAAGCTTATTCAGAATAAAATAATACTAATTTAATACTATTTAAAAAATTAATAACAAGAA
ATTTAAAAAATAAATCTATTTGCTGAACAAGTTCAAATAGTTAAGACTATATGAATAATTATTTA
TTTCAAATTATTATGACCATTTGTTTTATCATAAAACAATTGTTTTAGTCATACAAGCTTATTCC
AAATAAAATAAAAATAATTTATTAATATTTCAAAAATTATAAGTAAAAGATTTAAAAAATAAATT
AGTTTACCAAATCAGTTCAAATAATTATGAACATTTGAAAAACTATCTATTTCAAATCATTATTA
CCTTTTGTTTTGTCATAAAAAATTGTTTTCAACATACAAGTTTATTTGAAAGAAAATAACACTAA
TTCATTAATATTTCAAAAATTAATAAGAGAATTAAAAAATAAATCTGCTTACCAAACCAGTTCAA
AAAGTTATGACTATATGAATAATTACCTATTTTAAATCATTATAACATTTTGTTCTATCATAAAA
CAATTGGTTATATC
Found at i:92774 original size:113 final size:113
Alignment explanation
Indices: 92570--92794 Score: 265
Period size: 113 Copynumber: 2.0 Consensus size: 113
92560 AATGGTTAAG
* * ** *
92570 ACTATTAGAATAATTATCTATTTCAAATCGTTCTAACCTTTTGTTTAGTTATAAAACAATTGTTT
1 ACTATTAGAATAATTATCTATTTAAAATCGTTATAACCACTTGTTTAGTCATAAAACAATTGTTT
* ** *
92635 CAGCTCATACAAGCTTATTCAAAATAAATTAATACTAATTTATTAATT
66 CAGCTCATACAAACTTAAACAAAATAAAATAATACTAATTTATTAATT
* * * *
92683 ACTATTTGAGTAATTGTCTATTTAAAATCGTTATAACCACTTGATTT-GTCATAAAATAATTGTT
1 ACTATTAGAATAATTATCTATTTAAAATCGTTATAACCACTTG-TTTAGTCATAAAACAATTGTT
* * * *
92747 TCAG-TTAGTACAAATTTAAACAGAATAAAATAATATTAATTTATTAAT
65 TCAGCTCA-TACAAACTTAAACAAAATAAAATAATACTAATTTATTAAT
92795 ATTTTTGAAA
Statistics
Matches: 93, Mismatches: 17, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
112 2 0.02
113 88 0.95
114 3 0.03
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.42
Consensus pattern (113 bp):
ACTATTAGAATAATTATCTATTTAAAATCGTTATAACCACTTGTTTAGTCATAAAACAATTGTTT
CAGCTCATACAAACTTAAACAAAATAAAATAATACTAATTTATTAATT
Found at i:93006 original size:181 final size:182
Alignment explanation
Indices: 92683--94899 Score: 1518
Period size: 181 Copynumber: 12.3 Consensus size: 182
92673 TTTATTAATT
* * * * * ** * *
92683 ACTATTTGAGTAATTGTCTATTTAAAATCGTTATAACCACTTGATTTGTCATAAAATAATTG-TT
1 ACTATTTGAATAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTT
* * * ** ** * * ***
92747 TCAGTTAGTACAAATTTAAACAGAATAAAATAATATTAATTTATTAATATTTTTGAAATTAATAA
66 TTAATCA-TACAAGCTTATTCAAAATAAAATAATAATAATTTATTAATATTTCAAAAATTAATAA
* ** *
92812 GTAAGAAATTTAAAAAATAAATTTGTTTACTGAATCAGTAAAAATAATTATAG
130 GTAAGAGATTTAAAAAATAAATTTGTTTACTGAATCAGTTCAAATAGTTATAG
* * * * * *
92865 -CCATTTGGATGATTATCTATTTGAAATCGTTATGAGCTTTTGTTTTGTCATAAAACAATTGTTT
1 ACTATTTGAATAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTT
* *
92929 TTAATCATACAAGCTTATTCAAAATAAAATAACAATAATTTATTAATATTTGAAAAATTAATAAG
66 TTAATCATACAAGCTTATTCAAAATAAAATAATAATAATTTATTAATATTTCAAAAATTAATAAG
* * *
92994 TAAGAGATTTAAAAAATAAATTTGTTTACCGAACCAGTTTAAATAGTTAT-G
131 TAAGAGATTTAAAAAATAAATTTGTTTACTGAATCAGTTCAAATAGTTATAG
* * * * * * *
93045 ACTATTTGAACAATTTTCAATCTCAAATTGTTAAGA-TTTTTGTTTTGTCATTAAACAATTGTTT
1 ACTATTTGAATAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTT
* * * * * *
93109 TTTATCATAGAAGCTTATTC-AATTAAAAATAATACTAATTTAATAATATTCCAAAAA-T--TAA
66 TTAATCATACAAGCTTATTCAAAAT-AAAATAATAATAATTTATTAATATTTCAAAAATTAATAA
* * * * * * * *
93170 -TAAGAGATTTAAAAATTAAATGTGCTTGCGGCATCAGTTCAAATAATTA-AA
130 GTAAGAGATTTAAAAAATAAATTTGTTTACTGAATCAGTTCAAATAGTTATAG
* * * * ** **
93221 ACCATTAGAATAATTATCTATTAT-AGATTGTTTTGATATTTTGTTAAGTCA-AAAA-ATATT-T
1 ACTATTTGAATAATTATCTATT-TCAAATTGTTATGACCTTTTGTTTTGTCATAAAACA-ATTGT
* * * * * * **
93282 ATTTCACATCTTACAAGCTTATTCGAAATAACATAATCCA-AATTTATTAACATTTGGAAAATTA
64 -TTTTA-ATCATACAAGCTTATTCAAAATAAAATAAT-AATAATTTATTAATATTTCAAAAATTA
* * * * * * *
93346 AAAAGCAAAAGATTTGAAAAAATAAATCTATTTATTGAATAAGTTCAAATAGTTATA-
126 ATAAGTAAGAGATTT-AAAAAATAAATTTGTTTACTGAATCAGTTCAAATAGTTATAG
* * * * * * *
93403 ATTATTTGAACAATTATTTATTTAAAATTGTTATGACCTTTCGTTTTGACATATAACAATTG-TT
1 ACTATTTGAATAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTT
* * * * * *
93467 TCAATTCATAAAAGCATATCCAAAATAAAATAATAATAATTTCTTAATATTTTAAAAATTAATAA
66 TTAA-TCATACAAGCTTATTCAAAATAAAATAATAATAATTTATTAATATTTCAAAAATTAATAA
* * *
93532 ATAAGAG-TTTAAAAAAATAAATTTGTTTACTGAA-CAAATTCAAATAGTT-TTG
130 GTAAGAGATTT-AAAAAATAAATTTGTTTACTGAATC-AGTTCAAATAGTTATAG
* * * *
93584 ACTATTTAAACAATTATCTATTTAAAATTGTTATGACCTTTTGTTTTGTCATAAAACAATTG-CT
1 ACTATTTGAATAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTT
* * * * * *
93648 TCAGTTCCTATAAGCTTATTCGAAATAAAATAATACTAATTTATTAATA-TTCTAAAAATTAATA
66 TTA-ATCATACAAGCTTATTCAAAATAAAATAATAATAATTTATTAATATTTC-AAAAATTAATA
* * * ** * * * *
93712 AGT----GATTTAAAAAGTGAATCTGTTTACCAAATTAGCTCAAATAATTATCG
129 AGTAAGAGATTTAAAAAATAAATTTGTTTACTGAATCAGTTCAAATAGTTATAG
* * ** * * * *
93762 -CCATTTCAATAATTATCTATTTCAAATCATTGTTACCTTTTGTTTGGTCATATAACAATTG-TT
1 ACTATTTGAATAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTT
* * * *
93825 TTATATCATACAAGCTTATTCAGAATAAAATAATACTAATTTCTTAATCTTTCAAAAATTAATAA
66 TTA-ATCATACAAGCTTATTCAAAATAAAATAATAATAATTTATTAATATTTCAAAAATTAATAA
*
93890 GTAAGAGATTT-AAAAA-AAATTTGTTTACTGAATCAATTCAAATAGTTAT-G
130 GTAAGAGATTTAAAAAATAAATTTGTTTACTGAATCAGTTCAAATAGTTATAG
* * * * * * * * *
93940 ACTATTTGAAGAATTGTATACTTCAAATCAATTATTTACAAAATAAACCTTTTGTTCTATTATAA
1 ACTATTTGAATAATTATCTATTTC--A--AATT-GTT-----AT-GACCTTTTGTTTTGTCATAA
* * ** * *
94005 AATAA-TGATTTATGTTCATACATGCTTATTCAAAATAAAATAATAATAATTTAATAATATTTCA
55 AACAATTG-TTTTTAATCATACAAGCTTATTCAAAATAAAATAATAATAATTTATTAATATTTCA
* * * * * ** *
94069 AAAATTAATAACTAAGAGATTTAAAAATTAAATTTGTTT-GTCAAACTAGTTCATTTTGTTA-AG
119 AAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACTGAATC-AGTTCAAATAGTTATAG
* * * * * *
94132 AGTATATAAACAATTATCTATTTCAAATTGTTATGACTTTTTGTTTTGTTATAAAACAATT-TTT
1 ACTATTTGAATAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTT
* * * *
94196 TCAATTCATGCTAGCTTATTTC-AAATAAAATAA-AATGAATTTATTAATATTGCAAAAA-T--T
66 TTAA-TCATACAAGCTTA-TTCAAAATAAAATAATAAT-AATTTATTAATATTTCAAAAATTAAT
* * *
94256 AA-TAAGAGATTTAAAAAAT-AATTATGTTTACCT-AACCAGTTCTAATAATTAT-G
128 AAGTAAGAGATTTAAAAAATAAATT-TGTTTA-CTGAATCAGTTCAAATAGTTATAG
* * *
94309 ACTATTTGAATAATTATCTATTTCAAAATGTTATAACCTTTTGTTTTGTCATAAAA-TA-TGTTT
1 ACTATTTGAATAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTT
** * * * * * * * * *
94372 TTGTTCACATAAGTTTGTTTAGAATAAAATAATACA-AATCTATTAATATTACAAAAA-T--TCA
66 TTAATCATACAAGCTTATTCAAAATAAAATAATA-ATAATTTATTAATATTTCAAAAATTAATAA
* * * * *
94433 -TAAGAGATTTTAAAAATAAATCTGTTGA-TCAAACTAGTTCAAATAGTTATA-
130 GTAAGAGATTTAAAAAATAAATTTGTTTACTGAATC-AGTTCAAATAGTTATAG
** * ** * *
94484 ACTATTTGAGCAATTAAT-TATTTCAAATTGTTTTGA-CTCTTTGTTACGTTATAAAACAATAGT
1 ACTATTTGAATAATT-ATCTATTTCAAATTGTTATGACCT-TTTGTTTTGTCATAAAACAATTGT
* * * * * * * * ** *
94547 TTCTATTCATACAAGGTTATTTAGATTAAAATAATACTAATTTATTATTATTTTGACAATTAATA
64 TTTTAATCATACAAGCTTATTCAAAATAAAATAATAATAATTTATTAATATTTCAAAAATTAATA
* * * * ** * * *
94612 ATTAA-AAATTTAAAACATAAATATGTTTACCAAAACTAGATCAAATAGTCAT-G
129 AGTAAGAGATTTAAAAAATAAATTTGTTTACTGAATC-AGTTCAAATAGTTATAG
* *
94665 ACTATTTGAATAATTATCTATTTCAAATTATTATGA-CTTTTGTTTTGTCATAAGAA-AATT-AT
1 ACTATTTGAATAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAA-AACAATTGTT
* * * * * * * * *
94727 TTCAGTTCATATAAGGTTATTCGAAATAAAATAATACTAAGTTGTTAATATTCCAAAAATTAATA
65 TTTA-ATCATACAAGCTTATTCAAAATAAAATAATAATAATTTATTAATATTTCAAAAATTAATA
* * * * * * *
94792 ATTAAGATATTT-AAAAATAAAATTATTTACCGAA-CAAGTTTAAATACTTAT-G
129 AGTAAGAGATTTAAAAAATAAATTTGTTTACTGAATC-AGTTCAAATAGTTATAG
* * * ** * *
94844 ACTATTTAAACAGTTATCTATTTGGAATTGCTATAACCTTTTGTTTTGTCATAAAA
1 ACTATTTGAATAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAA
94900 ATATTTCATC
Statistics
Matches: 1589, Mismatches: 361, Indels: 173
0.75 0.17 0.08
Matches are distributed among these distances:
173 1 0.00
174 7 0.00
175 118 0.07
176 90 0.06
177 314 0.20
178 20 0.01
179 93 0.06
180 213 0.13
181 447 0.28
182 132 0.08
183 10 0.01
184 3 0.00
187 2 0.00
188 4 0.00
189 3 0.00
190 83 0.05
191 11 0.01
192 38 0.02
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (182 bp):
ACTATTTGAATAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTT
TTAATCATACAAGCTTATTCAAAATAAAATAATAATAATTTATTAATATTTCAAAAATTAATAAG
TAAGAGATTTAAAAAATAAATTTGTTTACTGAATCAGTTCAAATAGTTATAG
Found at i:94214 original size:548 final size:531
Alignment explanation
Indices: 92770--94994 Score: 1571
Period size: 548 Copynumber: 4.1 Consensus size: 531
92760 ATTTAAACAG
** * *** * *
92770 AATAAAATAATATTAATTTATTAATATTTTTGAAATTAATAAGTAAGAA-ATTTAAAAAATAAAT
1 AATAAAATAATACAAATTTATTAACATTTCAAAAATTAAAAAGCAA-AAGATTTAAAAAATAAAT
* * * ** * * * * ** * ** * *
92834 TTGTTTACTGAATCAGTAAAAATAATTATAGCCATTTGGATGATTATCTATTTGAAATCGTTATG
65 CTATTTACTGAATAAGTTCAAATAGTTATAACTATTTGAACAATTATATATTAAAAATTGTTATA
* * * * * * *
92899 AGCTTTTGTTTTGTCATAAAACAATTGTTTTTAA-TCATACAAGCTTATTCAAAATAAAATAACA
130 ACCTTTCGTTCTGACATATAACAATTG-TTTCAATTCATACAAGCTTATTCAAAATAAAATAATA
* *
92963 ATAATTTATTAATATTTGAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACCGAAC
194 ATAATTTATTAATATTTCAAAAATTAATAAATAAGAGATTTAAAAAATAAATTTGTTTA-CGAAC
* * * * * * *
93028 CAGTTTAAATAGTTATGACTATTTGAACAATTTTCAATCTCAAATTGTTAAGA-TTTTTGTTTTG
258 AAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATTGTTATGACTTTTTGTTTTG
* ** * * *
93092 TCATTAAACAATTGTTTTTTA-TCATAGAAGCTTATTCAATTAAAAATAATACTAATTTAATAAT
323 TCATAAAACAATT-TTTTCAATTCAT-GTAGCTTATTCAAAT-AAAATAATACTAATTTATTAAT
* * ***
93156 ATTCCAAAAATTAATAAGAGATTTAAAAATTAA-ATGTGCTTGCGGCATCAGTTCAAATAATTAA
385 ATT-CAAAAATTAATAAGAGATTTAAAAAATAATATGT--TTACCAAATCAGTTCAAATAATT-A
** * * ** * * * *
93220 AACCATTAGAATAATTATCTATTAT-AGATTGTTTTGATATTTTGTTAAGTCAAAAAATATTTAT
446 TGCCATTTGAATAATTATCTATT-TCA-AATGTTTT-ACCTTTTGTTTAGTCATAAAACAATTAT
*
93284 TTCACATCTTACAAGCTTATTCGA
508 TTCACATCATACAAGCTTATTCGA
* * **
93308 AATAACATAATCCAAATTTATTAACATTTGGAAAATTAAAAAGCAAAAGATTTGAAAAAATAAAT
1 AATAAAATAATACAAATTTATTAACATTTCAAAAATTAAAAAGCAAAAGATTT-AAAAAATAAAT
* * * * *
93373 CTATTTATTGAATAAGTTCAAATAGTTATAATTATTTGAACAATTATTTATTTAAAATTGTTATG
65 CTATTTACTGAATAAGTTCAAATAGTTATAACTATTTGAACAATTATATATTAAAAATTGTTATA
* * * *
93438 ACCTTTCGTTTTGACATATAACAATTGTTTCAATTCATAAAAGCATATCCAAAATAAAATAATAA
130 ACCTTTCGTTCTGACATATAACAATTGTTTCAATTCATACAAGCTTATTCAAAATAAAATAATAA
* *
93503 TAATTTCTTAATATTTTAAAAATTAATAAATAAGAG-TTTAAAAAAATAAATTTGTTTACTGAAC
195 TAATTTATTAATATTTCAAAAATTAATAAATAAGAGATTT-AAAAAATAAATTTGTTTAC-GAAC
* * * *
93567 AAATTCAAATAGTTTTGACTATTTAAACAATTATCTATTTAAAATTGTTATGACCTTTTGTTTTG
258 AAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATTGTTATGACTTTTTGTTTTG
** * * *
93632 TCATAAAACAATTGCTTCAGTTCCTATAAGCTTATTCGAAATAAAATAATACTAATTTATTAATA
323 TCATAAAACAATTTTTTCAATTCATGT-AGCTTATTC-AAATAAAATAATACTAATTTATTAATA
* * * * *
93697 TTCTAAAAATTAATAAGTGATTTAAAAAGTGAATCTGTTTACCAAATTAGCTCAAATAATTATCG
386 TTC-AAAAATTAATAAGAGATTTAAAAAAT-AATATGTTTACCAAATCAGTTCAAATAATTAT-G
* * * * * *
93762 CCATTTCAATAATTATCTATTTCAAATCATTGTTACCTTTTGTTTGGTCATATAACAATTGTTTT
448 CCATTTGAATAATTATCTATTTCAAAT-GTT-TTACCTTTTGTTTAGTCATAAAACAATTATTTC
*
93827 ATATCATACAAGCTTATTC-A
511 ACATCATACAAGCTTATTCGA
* * * * *
93847 GAATAAAATAATACTAATTTCTTAATC-TTTCAAAAATTAATAAGTAAGAGATTT-AAAAA-AAA
1 -AATAAAATAATACAAATTTATTAA-CATTTCAAAAATTAAAAAGCAAAAGATTTAAAAAATAAA
* * * * *
93909 TTTGTTTACTGAATCAA-TTCAAATAGTTATGACTATTTGAAGAATTGTATACTTCAAATCAATT
64 TCTATTTACTGAAT-AAGTTCAAATAGTTATAACTATTTGAACAATTATATA-TT-AAA--AATT
* * * * *
93973 ATTTACAAAATAAACCTTTTGTTCT-A-TTATAA-AATAATGATTT-ATGTTCATACATGCTTAT
124 -GTT-----AT-AACCTTTCGTTCTGACATATAACAAT--TG-TTTCA-ATTCATACAAGCTTAT
* * *
94034 TCAAAATAAAATAATAATAATTTAATAATATTTCAAAAATTAATAACTAAGAGATTTAAAAATTA
178 TCAAAATAAAATAATAATAATTTATTAATATTTCAAAAATTAATAAATAAGAGATTTAAAAAATA
* * * ** * * * *
94099 AATTTGTTTGTCAAACTAGTTCATTTTGTTAAGAGTATATAAACAATTATCTATTTCAAATTGTT
243 AATTTGTTT-ACGAACAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATTGTT
*
94164 ATGACTTTTTGTTTTGTTATAAAACAATTTTTTCAATTCATGCTAGCTTATTTCAAATAAAATAA
307 ATGACTTTTTGTTTTGTCATAAAACAATTTTTTCAATTCATG-TAGCTTA-TTCAAATAAAATAA
* * *
94229 -AATGAATTTATTAATATTGCAAAAATTAATAAGAGATTTAAAAAATAATTATGTTTACCTAACC
370 TACT-AATTTATTAATATT-CAAAAATTAATAAGAGATTTAAAAAATAA-TATGTTTACCAAATC
* * * *
94293 AGTTCTAATAATTATGACTATTTGAATAATTATCTATTTCAAAATGTTATAACCTTTTGTTTTGT
432 AGTTCAAATAATTATG-CCATTTGAATAATTATCTATTTC-AAATGTT-TTACCTTTTGTTTAGT
* * ** * * *
94358 CATAAAA-TATGTTTTTGTTCA-CAT--AAGTTTGTT-TA
494 CATAAAACAAT-TATTT-CACATCATACAAGCTTATTCGA
* * * * * *
94393 GAATAAAATAATACAAATCTATTAATATTACAAAAATTCATAAG----AGATTTTAAAAATAAAT
1 -AATAAAATAATACAAATTTATTAACATTTCAAAAATTAAAAAGCAAAAGATTTAAAAAATAAAT
* * * * **
94454 CTGTTGA-TCAA-ACTAGTTCAAATAGTTATAACTATTTGAGCAATTA-ATTATTTCAAATTGTT
65 CTATTTACTGAATA--AGTTCAAATAGTTATAACTATTTGAACAATTATA-TATTAAAAATTGTT
* * ** * * * * * * *
94516 TTGACTCTTT-GTTAC-GTTATAAAACAATAGTTTCTATTCATACAAGGTTATTTAGATTAAAAT
127 ATAAC-CTTTCGTT-CTGACATATAACAATTGTTTCAATTCATACAAGCTTATTCAAAATAAAAT
* * ** * * * * *
94579 AATACTAATTTATTATTATTTTGACAATTAATAATTAA-AAATTTAAAACATAAATATGTTTACC
190 AATAATAATTTATTAATATTTCAAAAATTAATAAATAAGAGATTTAAAAAATAAATTTGTTTA-C
* * * * * * *
94643 AAAACTAGATCAAATAGTCATGACTATTTGAATAATTATCTATTTCAAATTATTATGAC-TTTTG
254 -GAACAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATTGTTATGACTTTTTG
* * * * * *
94707 TTTTGTCATAAGAA-AATTATTTCAGTTCATATAAGGTTATTCGAAATAAAATAATACTAAGTTG
318 TTTTGTCATAA-AACAATTTTTTCAATTCATGT-AGCTTATTC-AAATAAAATAATACTAATTTA
* * * * * *
94771 TTAATATTCCAAAAATTAATAATTAAGATATTTAAAAATAAAATTATTTACCGAA-CAAGTTTAA
380 TTAATATT-CAAAAATTAATAA--GAGAT-TTAAAAAATAATA-TGTTTACCAAATC-AGTTCAA
* * * * * * * * * *
94835 ATACTTATGACTATTTAAACAGTTATCTATTTGGAATTGCTATAACCTTTTGTTTTGTCAT-AAA
439 ATAATTATG-CCATTTGAATAATTATCTATTT-CAAATG-TTTTACCTTTTGTTTAGTCATAAAA
* * *
94899 -AA-TATTTCATCTGTTTATACAAGCCTATGTC-A
501 CAATTATTTCA-C--ATCATACAAGCTTAT-TCGA
* * ** * *
94931 GATAAAATAATTCAAATTTATT-AC-TGACAAGATAATTAATAAGTAAAAGATTTAAAAAATAAA
1 AATAAAATAATACAAATTTATTAACATTTCAA-A-AATTAAAAAGCAAAAGATTTAAAAAATAAA
94994 T
64 T
94995 TTGTTCACCA
Statistics
Matches: 1349, Mismatches: 252, Indels: 169
0.76 0.14 0.10
Matches are distributed among these distances:
531 4 0.00
532 95 0.07
533 112 0.08
534 17 0.01
535 86 0.06
536 6 0.00
537 78 0.06
538 60 0.04
539 220 0.16
540 205 0.15
541 29 0.02
542 12 0.01
543 12 0.01
544 37 0.03
545 3 0.00
546 50 0.04
547 13 0.01
548 295 0.22
549 15 0.01
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.40
Consensus pattern (531 bp):
AATAAAATAATACAAATTTATTAACATTTCAAAAATTAAAAAGCAAAAGATTTAAAAAATAAATC
TATTTACTGAATAAGTTCAAATAGTTATAACTATTTGAACAATTATATATTAAAAATTGTTATAA
CCTTTCGTTCTGACATATAACAATTGTTTCAATTCATACAAGCTTATTCAAAATAAAATAATAAT
AATTTATTAATATTTCAAAAATTAATAAATAAGAGATTTAAAAAATAAATTTGTTTACGAACAAG
TTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATTGTTATGACTTTTTGTTTTGTCA
TAAAACAATTTTTTCAATTCATGTAGCTTATTCAAATAAAATAATACTAATTTATTAATATTCAA
AAATTAATAAGAGATTTAAAAAATAATATGTTTACCAAATCAGTTCAAATAATTATGCCATTTGA
ATAATTATCTATTTCAAATGTTTTACCTTTTGTTTAGTCATAAAACAATTATTTCACATCATACA
AGCTTATTCGA
Found at i:94331 original size:16 final size:17
Alignment explanation
Indices: 94299--94331 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
94289 AACCAGTTCT
94299 AATAATTATGACTATTTG
1 AATAATTAT-ACTATTTG
94317 AATAATTAT-CTATTT
1 AATAATTATACTATTT
94332 CAAAATGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (17 bp):
AATAATTATACTATTTG
Found at i:94510 original size:175 final size:174
Alignment explanation
Indices: 94038--95032 Score: 684
Period size: 180 Copynumber: 5.6 Consensus size: 174
94028 GCTTATTCAA
* * *
94038 AATAAAATAATA-ATAATTTAATAATATTTCAAAAATTAATAACTAAGAGATTTAAAAATTAAAT
1 AATAAAATAATACA-AATTTATTAATATTACAAAAATTAATAA-TAAGA-TTTTAAAAA-TAAAT
* ** ** * * * * * *
94102 TTGTTTGTCAAACTAGTTCATTTTGTTAAGAGTATATAAACAATTATCTATTTCAAATTGTTATG
62 ATGTTTACCAAACTAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTGTTATA
* * * *
94167 ACTTTTTGTTTTGTTATAAAACAAT-TTTTTCAATTCATGCT-AGCTTATTTCA-
127 AC-TTTTGTTTTGTCATAAAA-AATGTTTTT--GTTCAT-ATAAGGTT-TTT-AG
* ** * * * *
94219 AATAAAATAAAATGAATTTATTAATATTGCAAAAATTAATAA-GAGATTTAAAAAATAATTATGT
1 AATAAAATAATACAAATTTATTAATATTACAAAAATTAATAATAAGATTTTAAAAATAAATATGT
* * * * * *
94283 TTACCTAACCAGTTCTAATAATTATGACTATTTGAATAATTATCTATTTCAAAATGTTATAACCT
66 TTACCAAACTAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTGTTATAA-CT
* * *
94348 TTTGTTTTGTCATAAAATATGTTTTTGTTCACATAAGTTTGTTTAG
130 TTTGTTTTGTCATAAAAAATGTTTTTGTTCATATAAGGTT-TTTAG
* * * *
94394 AATAAAATAATACAAATCTATTAATATTACAAAAATTCATAA-GAGATTTTAAAAATAAATCTGT
1 AATAAAATAATACAAATTTATTAATATTACAAAAATTAATAATAAGATTTTAAAAATAAATATGT
* * * * * *
94458 TGATCAAACTAGTTCAAATAGTTATAACTATTTGAGCAATTAAT-TATTTCAAATTGTTTTGACT
66 TTACCAAACTAGTTCAAATAGTTATGACTATTTGAACAATT-ATCTATTTCAAATTGTTATAACT
** * * * *
94522 CTTTGTTACGTTATAAAACAATAGTTTCTATTCATACAAGGTTATTTAG
130 -TTTGTTTTGTCATAAAA-AAT-GTTTTTGTTCATATAAGGTT-TTTAG
* * * *** * * *
94571 ATTAAAATAATACTAATTTATTATTATTTTGACAATTAATAATTAAAAATTTAAAACATAAATAT
1 AATAAAATAATACAAATTTATTAATATTACAAAAATTAATAA-TAAGATTTTAAAA-ATAAATAT
* * * * *
94636 GTTTACCAAAACTAGATCAAATAGTCATGACTATTTGAATAATTATCTATTTCAAATTATTATGA
64 GTTTACC-AAACTAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTGTTATAA
* * *
94701 CTTTTGTTTTGTCATAAGAAAAT-TATTTCAGTTCATATAAGGTTATTCG
128 CTTTTGTTTTGTCATAA-AAAATGT-TTT-TGTTCATATAAGGTTTTTAG
* * * *
94750 AAATAAAATAATACTAAGTTGTTAATATTCCAAAAATTAATAATTAAGATATTTAAAAATAAA-A
1 -AATAAAATAATACAAATTTATTAATATTACAAAAATTAATAA-TAAGAT-TTTAAAAATAAATA
* * * * * * * ** *
94814 TTATTTACCGAACAAGTTTAAATACTTATGACTATTTAAACAGTTATCTATTTGGAATTGCTATA
63 -TGTTTACCAAACTAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTGTTATA
* * * * * *
94879 ACCTTTTGTTTTGTCATAAAAATAT-TTCATCTGTTTATACAAGCCTATGTCAG
127 A-CTTTTGTTTTGTCATAAAAA-ATGTT--TTTGTTCATATAAG-GT-TTTTAG
* * * *
94932 -ATAAAATAATTCAAATTTATT-A-CTGACAAGATAATTAATAAGTAAAAGATTTAAAAAATAAA
1 AATAAAATAATACAAATTTATTAATATTACAA-A-AATTAATAA-T--AAGATTTTAAAAATAAA
* * * * *
94994 TTTGTTCACCACACAAGTTCAAATCGTTATGACTATTTG
61 TATGTTTACCAAACTAGTTCAAATAGTTATGACTATTTG
95033 TTAGCCTTGA
Statistics
Matches: 638, Mismatches: 145, Indels: 62
0.76 0.17 0.07
Matches are distributed among these distances:
174 4 0.01
175 127 0.20
176 6 0.01
177 128 0.20
178 13 0.02
179 67 0.11
180 148 0.23
181 137 0.21
182 8 0.01
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (174 bp):
AATAAAATAATACAAATTTATTAATATTACAAAAATTAATAATAAGATTTTAAAAATAAATATGT
TTACCAAACTAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTGTTATAACTT
TTGTTTTGTCATAAAAAATGTTTTTGTTCATATAAGGTTTTTAG
Found at i:94941 original size:360 final size:356
Alignment explanation
Indices: 94262--95032 Score: 774
Period size: 360 Copynumber: 2.2 Consensus size: 356
94252 AATTAATAAG
* * * * *
94262 AGATTTAAAAAATAATTATGTTTACCTAACCAGTTCTAATAATTATGACTATTTGAATAATTATC
1 AGATTTAAAAAATAAATATGTTTACCAAACAAGTTCAAATAGTTATGACTATTTGAATAATTATC
* * * * * *
94327 TATTTCAAAATGTTATAACCTTTTGTTTTGTCATAAAATATGTTTTTGTTCACATAAGTTTGTTT
66 TATTTCAAAATATTATAACCTTTTGTTTTGTCATAAAAAATGTTTTAGTTCACATAAGGTTATTG
* * *
94392 AGAATAAAATAATACAAATCTATTAATATTACAAAAATTCATAAGAGATTTTAAAAATAAATCTG
131 AGAATAAAATAATACAAATCTATTAATATTACAAAAATTAATAAAAGATTTTAAAAATAAATCTA
* * * * * * * *
94457 TTGATCAAACTAGTTCAAATAGTTATAACTATTTGAGCAATTAATTATTTCAAATTGTTTTGACT
196 TTGACCAAACAAGTTCAAATACTTATAACTATTTAAACAATTAATTATTTCAAATTGCTATAACT
* ** * *
94522 CTTTGTTACGTTATAAAACAATAGTTTCTATTCATACAAGGTTATTTAGATTAAAATAATACTAA
261 CTTTGTTACGTCATAAAACAATAGTTTCTATTCATACAAGCCTATTCAGATTAAAATAATACAAA
* *** *
94587 TTTATTA-TTATTTTGACAATTAATAATTAAA
326 TTTATTACTGA-CAAGACAATTAATAAGTAAA
* * * *
94618 A-ATTTAAAACATAAATATGTTTACCAAAACTAGATCAAATAGTCATGACTATTTGAATAATTAT
1 AGATTTAAAAAATAAATATGTTTACC-AAACAAGTTCAAATAGTTATGACTATTTGAATAATTAT
* * *
94682 CTATTTCAAATTATTATGA-CTTTTGTTTTGTCATAAGAAAAT-TATTTCAGTTCATATAAGGTT
65 CTATTTCAAAATATTATAACCTTTTGTTTTGTCATAA-AAAATGT-TTT-AGTTCACATAAGGTT
* * *
94745 ATTCGA-AATAAAATAATACTAAGT-TGTTAATATTCCAAAAATTAATAATTAAGATATTTAAAA
127 ATT-GAGAATAAAATAATAC-AAATCTATTAATATTACAAAAATTAATAA--AAGAT-TTTAAAA
* * * * * **
94808 ATAAAAT-TATTTACCGAACAAGTTTAAATACTTATGACTATTTAAACAGTT-ATCTATTTGGAA
187 AT-AAATCTATTGACCAAACAAGTTCAAATACTTATAACTATTTAAACAATTAAT-TATTTCAAA
** * * *
94871 TTGCTATAAC-CTTTTGTTTTGTCAT-AAA-AATATTTCATCTGTTTATACAAGCCTATGTCAGA
250 TTGCTATAACTC-TTTGTTACGTCATAAAACAATAGTT--TCTATTCATACAAGCCTAT-TCAGA
* *
94933 -TAAAATAATTCAAATTTATTACTGACAAGATAATTAATAAGTAAA
311 TTAAAATAATACAAATTTATTACTGACAAGACAATTAATAAGTAAA
* * * *
94978 AGATTTAAAAAATAAATTTGTTCACCACACAAGTTCAAATCGTTATGACTATTTG
1 AGATTTAAAAAATAAATATGTTTACCAAACAAGTTCAAATAGTTATGACTATTTG
95033 TTAGCCTTGA
Statistics
Matches: 335, Mismatches: 63, Indels: 30
0.78 0.15 0.07
Matches are distributed among these distances:
355 40 0.12
356 56 0.17
357 48 0.14
358 10 0.03
359 10 0.03
360 140 0.42
361 31 0.09
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (356 bp):
AGATTTAAAAAATAAATATGTTTACCAAACAAGTTCAAATAGTTATGACTATTTGAATAATTATC
TATTTCAAAATATTATAACCTTTTGTTTTGTCATAAAAAATGTTTTAGTTCACATAAGGTTATTG
AGAATAAAATAATACAAATCTATTAATATTACAAAAATTAATAAAAGATTTTAAAAATAAATCTA
TTGACCAAACAAGTTCAAATACTTATAACTATTTAAACAATTAATTATTTCAAATTGCTATAACT
CTTTGTTACGTCATAAAACAATAGTTTCTATTCATACAAGCCTATTCAGATTAAAATAATACAAA
TTTATTACTGACAAGACAATTAATAAGTAAA
Found at i:97427 original size:181 final size:180
Alignment explanation
Indices: 96699--99683 Score: 2170
Period size: 181 Copynumber: 16.5 Consensus size: 180
96689 ATTTGAACAA
* * * * * * **
96699 CAAATTATTATAACTTTTTGTTTTGTCATAAAAAAATTATTTCTGTTCATACAAGCTTA-TTCAA
1 CAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGGA
* * * * * * *
96763 ATTAAAATAATATTAATTTATTAATATTTTGACAATTAATAAGCAAAAGATTTAAAACATAAATA
66 A-TAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATT
* * * *
96828 TGTTTACCGAACAATTTCAAATAGTCATGACTATTTGAATAATTATCCATTT
130 TGTTTACC-AACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTT
* * * * * * *
96880 CAAATCATTGTGACCTTTTATTTTGTAATAAAATAATTGTTTC-AGTTAACATAAGCTTATTT-G
1 CAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTA-TTCATACAAGCTTATTTGG
* * * *** *
96943 AAGTAAAATAATACTAATTTATTAATATTCCAAAAATTAATGAGTAAGAGAACAAGAAAAATGAA
65 AA-TAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTA-AAAAATAAA
* * * * * *
97008 TATGTTTACTGAACAAGTTCAAAGAGCTATGACTATCTGAATAATTATCTATTT
128 TTTGTTTAC-CAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTT
* * * * *
97062 AAAAACATTATGACCTTTTGTTTTGTCAGAAAACAATTAGTTT-TGTTCATCCAAGCTTATTAT-
1 CAAATCATTATGACCTTTTGTTTTGTCATAAAACAATT-GTTTCTATTCATACAAGCTTATT-TG
* * * * * * * *
97125 GAATGAAATAATA-TAAATTAATTAATATTCCAAAAGTTAATAAGCAAAA-TTTTGAAAAATGAA
64 GAATAAAATAATACT-AATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAA
* * * * *
97188 TTTTTTTACTAAACATGTTCAAATAGTTATGACTATTTGAACAGTTATTTATTT
128 TTTGTTTAC-CAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTT
* * *
97242 CAAATTC-TTATGACCATTTGTTTTGTCATAAACCAATTGTTTCTATTCATGCAAGCTTATTTGG
1 CAAA-TCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGG
* *
97306 AATAAAATAATACTAATTTATTAAAATTCTAAAAATTAATAAGCAAAAGATTTAAAAAATAAATT
65 AATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATT
* ** * *
97371 TTTTTACCAAGTGAGTTCAAATAGTTATGACTATTTGAATAATTATTTATTT
130 TGTTTACCAA-CAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTT
* * *
97423 CAAATCATTATGATCTTTTGTTTTATCATAAAACAATTGTTTCTATTCATAAAAG-TATATTTGG
1 CAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCT-TATTTGG
* * * * * *
97487 AACAAAATAATATTGATTTATTAATATTCTAAAAATTAATAAGTTAGAGATTTAAAGAATAAATT
65 AATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATT
* * *
97552 TGTTTACCGAACAAGTTCAAATAGTTATGTCTATTTGAACTATCATCTATTT
130 TGTTTACC-AACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTT
* * * * * *
97604 CGAA-CTGTTATGACATTTTGTTTTATCATAAAATAATACCAATTATTCAAAATAATTGGTATTC
1 CAAATC-ATTATGACCTTTTGTTTTGTCAT---A-AA-A-C-A--ATT----GT--TT-CTATTC
** * * * *
97668 ATACAAAATTATTTAGAATAAACTAATACCAATTTATTACTATT-TCAAAAATTAATAAG-----
49 ATACAAGCTTATTTGGAATAAAATAATACTAATTTATTAATATTCT-AAAAATTAATAAGTAAAA
* * * * * * * * ***
97727 GATTTGAAAAATAAATGTGTTTACTGAACTAGTTTAAATAATTAAGCCTATGAAAACAATTATCT
113 GATTTAAAAAATAAATTTGTTTAC-CAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCT
97792 ATTT
177 ATTT
* * * * * * * *
97796 CAAATCGTTTTGACCTTTTGTTTAGTCATAAAATAATTGTTTCAATGT-ATACATGCTTATTCGA
1 CAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTAT-TCATACAAGCTTATTTGG
* * *
97860 AATAAAATAATACTAATTTATTAACATT-TAGAAAATTAATAAGCAAGAA-ATTAAAAAAATAAA
65 AATAAAATAATACTAATTTATTAATATTCTA-AAAATTAATAAGTAA-AAGATTTAAAAAATAAA
* * *
97923 TCTGTTTACCAAAAAGTTTAAATAGTTATGACTATTTGAACAATTATCTATTT
128 TTTGTTTACCAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTT
* ** * ** * * **
97976 AAAATTGTTATGACCTTTAAT-TTTTATTGTAAAACAATTGTTT-TAGTACATAAAAGCTTATCC
1 CAAATCATTATGACCTTT--TGTTTTGTCATAAAACAATTGTTTCTA-TTCATACAAGCTTATTT
** * * * * * * **
98039 AAAATAAAATAATA-TTACTTATTAATATT-TCAAAATTTGATAAGTTAGAGATTTAAAAGCTAA
63 GGAATAAAATAATACTAATTTATTAATATTCT-AAAAATTAATAAGTAAAAGATTTAAAAAATAA
* * * * * * * *
98102 ATTAGTTTATCGAATCAA-TTCAAATAATTTTGGCCATTTGAATAATTATCCATTT
127 ATTTGTTTA-CCAA-CAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTT
* ** * * * * * *
98157 TAAATCATTATGAATTTTTGTTTTATCATAAAATAACTATTTTTC-A-TAATACAAGCCTATTCG
1 CAAATCATTATGACCTTTTGTTTTGTCATAAAACAA-T-TGTTTCTATTCATACAAGCTTATTTG
* * * ** * *
98220 GTATAAAATAATACTAATTTACTAATATTTTAAAAATTAATAAGTAGGAGATGTAAAAAATTAAT
64 GAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAAT
* * * *
98285 TTGTTTACTGAACTAGTTCAAATAGTTATGACTATTTGAATAATTATATATTT
129 TTGTTTAC-CAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTT
** * * * * * * * * * ***
98338 CAAATTGTTATAAGCTTTTGTTATATCATAAAACAATTATTTTTGTTCATAAAAGTTTATTCAAA
1 CAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGGA
* * * *
98403 ATAAAATAATACTAATTTAATAATATTTTAAAAATTAATAA-CAAAGAGATTTAAAAAATAAATA
66 ATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAA-AGATTTAAAAAATAAATT
* * * * * *
98467 TATTTACCAAACTAGTTCAAATAGTTAAGACTATATGAACAATTCTTTATTT
130 TGTTTACC-AACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTT
* * * * * * ** *
98519 TAAATCATTAGGA-CTTTTAATTTTATCATAAAATAATTTTTTC-AGTTTTTA-AGTAACTTATT
1 CAAATCATTATGACCTTTT-GTTTTGTCATAAAACAATTGTTTCTA-TTCATACA--AGCTTATT
* * * * * * * * *
98581 TAGAGTAAAAAAAAACAAATTTGTTAATATT-TCAAAATT--T-AGTGAGAGATTTAAAAAAT-A
62 TGGAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAA
* * *
98641 ATTATG-TTGCCAAATCAA-TTCAAATAATTATAACTATTTGAACAATTATCTATTT
127 ATT-TGTTTACC-AA-CAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTT
* * * * * *
98696 CAAATCATTATTACCTTTTGTTTTGTCATAAAACAAATGCTTT-TATTTATATAAGTTTATTTGA
1 CAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTG-TTTCTATTCATACAAGCTTATTTGG
* * * * *
98760 AATAAAATAATATTAATTTATTAATATTTTAAAAATTAAGACGTAAGAGATTTAAAAAATAAATT
65 AATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATT
* * * * * * *
98825 TGTTTACTAAACCAGTTCAATTAGTTATAACTATTTGAACCATTATTTACTT
130 TGTTTAC-CAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTT
* * * * **
98877 CAAATCATGATGA-CTATTTGTTTTGTCATAAAAGAATTGTTTCTATTTATAC-TGTCTTATTCA
1 CAAATCATTATGACCT-TTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAG-CTTATTTG
* * * * ** *
98940 GAATAAAGTAATGCTAATTTATTAACATTCTAAAAGTTAATAAGTAACGGATTTAAAAAATGAAT
64 GAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAAT
* * * *
99005 TTG-TTAGCCTGACGAGTGT-AAATAATTATGACTGTTTGAACAATTATCTATTT
129 TTGTTTA-CC-AACAAGT-TCAAATAGTTATGACTATTTGAACAATTATCTATTT
** * * * *** * * * **
99058 CAAATTGTTATCACCATTTGTTTTATTGCAAAACAATTGTTTCTATTCACACAAGCCTATCTAAA
1 CAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGGA
* * * * * * *
99123 ATAAGATAATTCTAATTTATTAATATTCCAAAAAATAAT-AGCAAGAGATTTAAAAAAAATGAAT
66 ATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTT--AAAAAATAAAT
* * * * *
99187 TTATTTACTGAACAAGTTCAAATAGTTATGATTGTTTGAACAATTATCTATAT
129 TTGTTTAC-CAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTT
*** * * * * **
99240 CAAATTGCTATAACTTTTTGTTTTGTTATAAAACAATT-TTTTTATTCATACAAGCTTATTTTAA
1 CAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGGA
* * * * * *
99304 ATAAAATAATACAAATTTTTTTATATTCCAAAAATTAATGAGTAAAA-A-TTAAAAAAAAAAGTT
66 ATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAA-TT
* * *
99367 T-TTT--GAACACA-TTCAAATAGTTATGACAATTTGATCAATTATCTATTT
130 TGTTTACCAACA-AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTT
* * * * * * *
99415 CAAAT-AGTTAGGACATTTTATTTTGTCAGAAACCAATTGTTTCTATTCATACAAGCGTATTTGA
1 CAAATCA-TTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGG
* * * * *
99479 AATAAAATAATACT-AGTTATTAATATTCCAAAAATTGATAAGTAAAATATTTAAAAAATGAATT
65 AATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATT
* * * * *
99543 TGTTTACAAAGCAACTTCAAATAGTTATGACTGTTTGAACAATTGTTTATTT
130 TGTTTACCAA-CAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTT
* * * ** *
99595 AAAAT-AGTTATGATCTTTTGTTTTGTCATAAAACAATTGTTTTTATTCATACAAATTTATTGGG
1 CAAATCA-TTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGG
* *
99659 AATAAAAAAAAACTAATTTATTAAT
65 AATAAAATAATACTAATTTATTAAT
99684 GTTAGCTCAA
Statistics
Matches: 2217, Mismatches: 476, Indels: 222
0.76 0.16 0.08
Matches are distributed among these distances:
175 94 0.04
176 118 0.05
177 94 0.04
178 38 0.02
179 20 0.01
180 424 0.19
181 1003 0.45
182 265 0.12
183 14 0.01
184 1 0.00
185 3 0.00
186 1 0.00
187 2 0.00
188 3 0.00
189 1 0.00
190 3 0.00
192 76 0.03
193 1 0.00
194 1 0.00
196 3 0.00
197 51 0.02
198 1 0.00
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (180 bp):
CAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGGA
ATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATTT
GTTTACCAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTT
Found at i:101207 original size:24 final size:24
Alignment explanation
Indices: 101147--101194 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
101137 ATATCAAAGC
101147 ATCATCAAATTTTCATACCAATAT
1 ATCATCAAATTTTCATACCAATAT
101171 ATCATCAAATTTTCATACCAATAT
1 ATCATCAAATTTTCATACCAATAT
101195 TTCTTCCCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.21, G:0.00, T:0.38
Consensus pattern (24 bp):
ATCATCAAATTTTCATACCAATAT
Found at i:101313 original size:15 final size:15
Alignment explanation
Indices: 101295--101328 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
101285 AAACCACACA
*
101295 ACAATGCCACAAGCC
1 ACAAAGCCACAAGCC
*
101310 ACAAAGTCACAAGCC
1 ACAAAGCCACAAGCC
101325 ACAA
1 ACAA
101329 GAGAATAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.35, G:0.12, T:0.06
Consensus pattern (15 bp):
ACAAAGCCACAAGCC
Found at i:102824 original size:372 final size:370
Alignment explanation
Indices: 102079--103431 Score: 1765
Period size: 372 Copynumber: 3.7 Consensus size: 370
102069 AAGGTGCTAG
* * * * **
102079 TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGTGGCTTCGAAACCTGGGTATTCACCCTTTTG
1 TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTTCGAGACCCGGGCATTCACCCTTCCG
* * * **
102144 GCATCCCAAATCAGCCTTCCTGCCATGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCC
66 ACATCCCAGATCAACCTTCCTGCCACAGTTCACACCCTTGTGAGGTATTGTCCGCTCTGG-CCCC
* * * * *
102209 CTGGCCTCATGATTTTATCCTACAAAAGGTGTCTCACAAGGCGGAGATGGTGTGAACCTTTATAT
130 CTGGCCTCACGGTTTTATCCTACAAAAGGTGCCTCACAAAGCGGAGATGGTGTGAACCCTTATAT
*
102274 ACCCCAGTGACCCTCCTATTATGTTCGATGTGGGATTCAAGACTCTTTTTTAGGTCCGTGACATT
195 ACCCCAGTGACCCTCCTATTATGTTCGATGTGGGATTCAAGACTCTTTCTTAGGTCCGTGACATT
* * * *
102339 CTCCCATACCCAACCTCATGATGCCCTCGTCACGGAGGCTGACCACCCTGCCTGCCTCCCTTGAG
260 CTCCCACACCCAACCTCGTGACGCCCTCGTCACGAAGGCTGACCACCCTGCCTGCCTCCCTTGAG
*
102404 GTGCTTGGCGTGGATCGAACGGTTTAGGGCTGGCTCTAATACCACT
325 GTGCTTGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCACT
* * *
102450 TGTCACGGGTCGAGACTTAAGCTCTGAACCCGCGCGGCTCCGAGACCCAGGCATTCACCCTTCCG
1 TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTTCGAGACCCGGGCATTCACCCTTCCG
* * * * * **
102515 ACGTCCTAGATCAATCTACCTACCATGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCTCC
66 ACATCCCAGATCAACCTTCCTGCCACAGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCC-CC
* * * * *
102580 CTGGCCTCACGGTTTTGTCTTACAAAAGGTGCCTCACAAGGCGGAGGTGGTGTGAACCCTTTTTA
130 CTGGCCTCACGGTTTTATCCTACAAAAGGTGCCTCACAAAGCGGAGATGGTGTGAACCC-TTATA
* * *
102645 TGCCCCAAG-GACCCTTCTATTATGTTCGATGTGGGATTCAGGACTCTTTCTTAGGTCCGTGACA
194 TACCCC-AGTGACCCTCCTATTATGTTCGATGTGGGATTCAAGACTCTTTCTTAGGTCCGTGACA
* * * * *
102709 TTCTCCCCCACTCAACCTCGTGACGCCCTCATCACGAAGGCTGACCACCCTGCCTACCTCCCTCG
258 TTCTCCCACACCCAACCTCGTGACGCCCTCGTCACGAAGGCTGACCACCCTGCCTGCCTCCCTTG
* * *
102774 AGGTGCTTGACGTGGATCGAATGGTATAGGGCTGGCTCTGATACCACT
323 AGGTGCTTGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCACT
* ** ** **
102822 TGTCACGGGTCGAGACTTAAACTCCGAACCCATGCAACTTTAAGACCCGGGCATTCACCCTTCCG
1 TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTTCGAGACCCGGGCATTCACCCTTCCG
*** * *
102887 GTGTCCCAGATCAACCTTCTTGCCACAGTTCACACCCTTGTGAGGTATTGTCCGCTCTGACCCCC
66 ACATCCCAGATCAACCTTCCTGCCACAGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCC
* **
102952 ATGGCCTCATGGTTTTATCCTACAAAAGACGCCTCACAAAGCGGAGATGGTGTGAACCCTTATAT
131 -TGGCCTCACGGTTTTATCCTACAAAAGGTGCCTCACAAAGCGGAGATGGTGTGAACCCTTATAT
* * *
103017 ACCCCAGTGACCCTCCTATTATGTTCGATGTAGGATTCAAGACTC-TTCTTTAGGTCTGTGATAT
195 ACCCCAGTGACCCTCCTATTATGTTCGATGTGGGATTCAAGACTCTTTC-TTAGGTCCGTGACAT
* * * * ** * *
103081 TCTCTCGCACCCAACCTTGTGACACCCTCGTCAC-ATTGTTGACTACCCTGCCTGCCTCCCTTGA
259 TCTCCCACACCCAACCTCGTGACGCCCTCGTCACGAAGGCTGACCACCCTGCCTGCCTCCCTTGA
103145 GGTGCTTGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCACT
324 GGTGCTTGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCACT
* *
103192 TGTCACGGGTTGAGAC-T----T---AA--------GCTTCGA-ACTCGGGCATTCACCCTTCCG
1 TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTTCGAGACCCGGGCATTCACCCTTCCG
* * * *
103240 ACATCCCAGATCAGCCTTCCTGTCACAGTTCATACCCTTGTGAGGTATTGTCCGCTCTAGCCCCC
66 ACATCCCAGATCAACCTTCCTGCCACAGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCC
*
103305 TGGCCTCACGGTTTTGTCCTACAAAAGGTGCCTCACAAAGCGGAGATGGTGTGAACCCTTATATA
131 TGGCCTCACGGTTTTATCCTACAAAAGGTGCCTCACAAAGCGGAGATGGTGTGAACCCTTATATA
* *
103370 CCCCAGTGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCTTCCTTAGGTCCGTGACA
196 CCCCAGTGACCCTCCTATTATGTTCGATGTGGGATTCAAGACTCTTTCTTAGGTCCGTGACA
103432 CTAGAACATA
Statistics
Matches: 861, Mismatches: 114, Indels: 33
0.85 0.11 0.03
Matches are distributed among these distances:
352 115 0.13
353 78 0.09
354 4 0.00
362 2 0.00
365 1 0.00
369 1 0.00
370 90 0.10
371 249 0.29
372 319 0.37
373 2 0.00
ACGTcount: A:0.20, C:0.31, G:0.22, T:0.27
Consensus pattern (370 bp):
TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTTCGAGACCCGGGCATTCACCCTTCCG
ACATCCCAGATCAACCTTCCTGCCACAGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCC
TGGCCTCACGGTTTTATCCTACAAAAGGTGCCTCACAAAGCGGAGATGGTGTGAACCCTTATATA
CCCCAGTGACCCTCCTATTATGTTCGATGTGGGATTCAAGACTCTTTCTTAGGTCCGTGACATTC
TCCCACACCCAACCTCGTGACGCCCTCGTCACGAAGGCTGACCACCCTGCCTGCCTCCCTTGAGG
TGCTTGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCACT
Found at i:109701 original size:17 final size:17
Alignment explanation
Indices: 109681--109723 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
109671 ACAAATAAGC
109681 ACAATAGATGAATATAA
1 ACAATAGATGAATATAA
109698 ACAATAGATGAATATAA
1 ACAATAGATGAATATAA
*
109715 ACAAGAGAT
1 ACAATAGAT
109724 AGGGTTAGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.58, C:0.07, G:0.14, T:0.21
Consensus pattern (17 bp):
ACAATAGATGAATATAA
Found at i:110951 original size:29 final size:29
Alignment explanation
Indices: 110909--110966 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
110899 TATTATAAAA
*
110909 CAATTATTTATATTCATATAAATTAATCC
1 CAATTATTTATATTCATACAAATTAATCC
*
110938 CAATTGTTTATATTCATACAAATTAATCC
1 CAATTATTTATATTCATACAAATTAATCC
110967 GTCCATGGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.40, C:0.16, G:0.02, T:0.43
Consensus pattern (29 bp):
CAATTATTTATATTCATACAAATTAATCC
Found at i:118972 original size:27 final size:27
Alignment explanation
Indices: 118932--118984 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
118922 GCTAATATGG
* * *
118932 TTACTGTTTTGACACTAGTGTTATAAT
1 TTACTGCTTAGACACTAGTATTATAAT
118959 TTACTGCTTAGACACTAGTATTATAA
1 TTACTGCTTAGACACTAGTATTATAA
118985 CTCAAGTGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (27 bp):
TTACTGCTTAGACACTAGTATTATAAT
Found at i:122064 original size:129 final size:129
Alignment explanation
Indices: 121831--122086 Score: 440
Period size: 129 Copynumber: 2.0 Consensus size: 129
121821 ATCCAGCTCT
* *
121831 GCGAGGTAGTTTTCTCTTTGTTTTTGAATTTCTTTCATTAGCAGTCTGACCTCTTGTTATATTAA
1 GCGAGGTACTTTTCTCTTTGTTTTTGAATTTCTTTCACTAGCAGTCTGACCTCTTGTTATATTAA
*
121896 TTGCCTATCTTGCTATCTTAATTTCCTTAACGGTGAATGCCACAATTTGGTGAACCCCAACCTC
66 TTGCCTATCTTGCAATCTTAATTTCCTTAACGGTGAATGCCACAATTTGGTGAACCCCAACCTC
* *
121960 GCGAGGTACTTTTCTCTTTGTTTTTGAATTTCTTTCACTAGCAGTCTGACCTCTTTTTTTATTAA
1 GCGAGGTACTTTTCTCTTTGTTTTTGAATTTCTTTCACTAGCAGTCTGACCTCTTGTTATATTAA
* * *
122025 TTTCCTATCTTGCAATCTTAATTTCCTTAATGGTTAATGCCACAATTTGGTGAACCCCAACC
66 TTGCCTATCTTGCAATCTTAATTTCCTTAACGGTGAATGCCACAATTTGGTGAACCCCAACC
122087 GCTCAGATCA
Statistics
Matches: 119, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
129 119 1.00
ACGTcount: A:0.21, C:0.22, G:0.14, T:0.43
Consensus pattern (129 bp):
GCGAGGTACTTTTCTCTTTGTTTTTGAATTTCTTTCACTAGCAGTCTGACCTCTTGTTATATTAA
TTGCCTATCTTGCAATCTTAATTTCCTTAACGGTGAATGCCACAATTTGGTGAACCCCAACCTC
Found at i:128491 original size:19 final size:20
Alignment explanation
Indices: 128467--128521 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 20
128457 AATTCATGCG
128467 TTTAATATAATTTTT-TATT
1 TTTAATATAATTTTTATATT
*
128486 TTTAATTTATATTTTTAATATT
1 TTTAATATA-ATTTTT-ATATT
*
128508 TTCAATAATAATTT
1 TTTAAT-ATAATTT
128522 AGATTTTAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 8 0.28
20 6 0.21
22 13 0.45
23 2 0.07
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTAATATAATTTTTATATT
Found at i:128970 original size:23 final size:22
Alignment explanation
Indices: 128944--128989 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
128934 TTATAAAAAA
* *
128944 ATTATTTAAGGTGTTATTTATAT
1 ATTATTTAAGATATT-TTTATAT
128967 ATTATTTAAGATATTTTTATAT
1 ATTATTTAAGATATTTTTATAT
128989 A
1 A
128990 GAAAATATCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.57
Consensus pattern (22 bp):
ATTATTTAAGATATTTTTATAT
Found at i:129277 original size:63 final size:61
Alignment explanation
Indices: 129139--129277 Score: 149
Period size: 63 Copynumber: 2.2 Consensus size: 61
129129 TAATCCATAA
* **
129139 TATAAAAAA-ATTTAAGGCGTTTCTCAATAAAAAATACCTTAAATAATCTTTTTAATTTTT
1 TATAAAAAATATTTAAAGCGTTTCTCAATAAAAAATACCTTAAATAATCTTTTTAATAATT
* * *
129199 TATAAAATAATTATTTAAAGTGTTT-TCTATTAAAAAATACCTTAAATGATCATTTTATAAATAA
1 TATAAAA-AA-TATTTAAAGCGTTTCTC-AATAAAAAATACCTTAAATAATC-TTTT-T-AATAA
129263 TT
60 TT
129265 T-TAAAAAATATTT
1 TATAAAAAATATTT
129278 TTAATTTATT
Statistics
Matches: 66, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
60 7 0.11
61 2 0.03
62 2 0.03
63 37 0.56
64 6 0.09
65 6 0.09
66 6 0.09
ACGTcount: A:0.45, C:0.07, G:0.04, T:0.43
Consensus pattern (61 bp):
TATAAAAAATATTTAAAGCGTTTCTCAATAAAAAATACCTTAAATAATCTTTTTAATAATT
Found at i:129671 original size:24 final size:24
Alignment explanation
Indices: 129644--129692 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
129634 GAACCAAACA
129644 CCTCTTAAATTCCTAATTTCAAAT
1 CCTCTTAAATTCCTAATTTCAAAT
* *
129668 CCTCTTAGATTCTTAATTTCAAAT
1 CCTCTTAAATTCCTAATTTCAAAT
129692 C
1 C
129693 ATTTGCTTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.31, C:0.24, G:0.02, T:0.43
Consensus pattern (24 bp):
CCTCTTAAATTCCTAATTTCAAAT
Found at i:130898 original size:15 final size:16
Alignment explanation
Indices: 130867--130904 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
130857 TAATATAATT
130867 TTATTTAATTTCAATA
1 TTATTTAATTTCAATA
**
130883 -TATTTAATTTTTATA
1 TTATTTAATTTCAATA
130898 TTATTTA
1 TTATTTA
130905 TAATATCTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 13 0.68
16 6 0.32
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (16 bp):
TTATTTAATTTCAATA
Found at i:142680 original size:44 final size:44
Alignment explanation
Indices: 142632--142719 Score: 149
Period size: 44 Copynumber: 2.0 Consensus size: 44
142622 TAAACAAACA
* *
142632 TAATTCCTAATTCTATTCTATTACACTCCATCTCTAAACCAATT
1 TAATTCCTAATTCTATGCTATCACACTCCATCTCTAAACCAATT
*
142676 TAATTCCTAATTCTATGCTATCATACTCCATCTCTAAACCAATT
1 TAATTCCTAATTCTATGCTATCACACTCCATCTCTAAACCAATT
142720 GGTAGTATAG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.32, C:0.27, G:0.01, T:0.40
Consensus pattern (44 bp):
TAATTCCTAATTCTATGCTATCACACTCCATCTCTAAACCAATT
Found at i:148529 original size:3 final size:3
Alignment explanation
Indices: 148523--148548 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
148513 CATTTCTTCC
148523 TGA TGA TGA TGA TGA TGA TGA TGA TG
1 TGA TGA TGA TGA TGA TGA TGA TGA TG
148549 GGCTTGGAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.35, T:0.35
Consensus pattern (3 bp):
TGA
Found at i:149516 original size:64 final size:62
Alignment explanation
Indices: 149439--149714 Score: 192
Period size: 64 Copynumber: 4.4 Consensus size: 62
149429 ATTATTAACC
149439 AAAATCATATTAAATAAGCTTCTTTAAAATGTAT-AAAGAGATTATTTAAAAAGTTTTTTAATCC
1 AAAAT-ATATTAAATAA--TTCTTTAAAATGTATCAAAGAGATTATTTAAAAAGTTTTTT-ATCC
149503 A
62 A
* * * * * * * *
149504 AAAATGTTTTAAATAATATCTTTTAAAATAATATGAAA-AAATTATTTAAGACGTTTTTTGTCCA
1 AAAATATATTAAATAAT-TC-TTTAAAAT-GTATCAAAGAGATTATTTAAAAAGTTTTTTATCCA
* * *
149568 AAAATATATTAAATAATTCCCTTTAAAATGTATCAAAG-GATTATTT--AAAGCATTTTTGTCAA
1 AAAATATATTAAATAATT--CTTTAAAATGTATCAAAGAGATTATTTAAAAAG-TTTTTTATC-C
149630 A
62 A
* * * * * *
149631 AAAACATATTAAATAA-TCTTTTAAAAT-TTTTAAAAAGTATTATTTAAAGCA-TTTTTTGT-CA
1 AAAATATATTAAATAATTC-TTTAAAATGTATCAAAGAG-ATTATTTAAA-AAGTTTTTTATCCA
*
149692 AAAATATCTTAAATAATTTCTTT
1 AAAATATATTAAATAA-TTCTTT
149715 CATTACTTAT
Statistics
Matches: 169, Mismatches: 25, Indels: 37
0.73 0.11 0.16
Matches are distributed among these distances:
60 6 0.04
61 26 0.15
62 20 0.12
63 41 0.24
64 45 0.27
65 28 0.17
66 3 0.02
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.41
Consensus pattern (62 bp):
AAAATATATTAAATAATTCTTTAAAATGTATCAAAGAGATTATTTAAAAAGTTTTTTATCCA
Found at i:149675 original size:62 final size:64
Alignment explanation
Indices: 149544--149695 Score: 179
Period size: 63 Copynumber: 2.4 Consensus size: 64
149534 ATATGAAAAA
* * * *
149544 ATTATTT-AAGACGTTTTTTGTC-CAAAAATATATTAAATAATTCCCTTTAAAATGTATCAAAGG
1 ATTATTTAAAG-CATTTTTTGTCAAAAAAACATATTAAATAATTCCCTTTAAAATGTATAAAAGG
* * * *
149607 ATTATTTAAAGCA-TTTTTGTCAAAAAAACATATTAAATAA-T-CTTTTAAAATTTTTAAAAAGT
1 ATTATTTAAAGCATTTTTTGTCAAAAAAACATATTAAATAATTCCCTTTAAAATGTAT-AAAAGG
149669 ATTATTTAAAGCATTTTTTGTCAAAAA
1 ATTATTTAAAGCATTTTTTGTCAAAAA
149696 TATCTTAAAT
Statistics
Matches: 77, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
61 11 0.14
62 26 0.34
63 37 0.48
64 3 0.04
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (64 bp):
ATTATTTAAAGCATTTTTTGTCAAAAAAACATATTAAATAATTCCCTTTAAAATGTATAAAAGG
Found at i:150171 original size:189 final size:189
Alignment explanation
Indices: 149846--150210 Score: 536
Period size: 189 Copynumber: 1.9 Consensus size: 189
149836 TTTTAAAAGG
* * * * *
149846 GATTATTTAACATTTTTTTGGTCTATAAATACCTTAACTAATCACTTAAAATTTTTTAAAGAGTA
1 GATTATTTAAAACTTTTTTGGTCTAGAAATACCTTAAATAATCACTTAAAATTTTTTAAAAAGTA
* * ** *
149911 TTATTTAAGGTATTTTTTATTAAAAGACTTTAAATATTTTCTTTCATTACTTATAAGATTTAAGT
66 TTATTTAAGGTATTTTTTATTAAAAGACCTTAAATAATCACTTTCATTACTTATAAGATTTAAGA
**
149976 GATAAAATATAAATAAATTTGAATAATTCAATTAATTAGAGCATATATATTTTGAAAAT
131 GATAAAATATAAATAAATTAAAATAATTCAATTAATTAGAGCATATATATTTTGAAAAT
*
150035 GATTATTTAAAAACTTTTTT-G-CTAGAAATACCTTAAATAATCCCTTAAAATTTTTTGAAAAAG
1 GATTATTT-AAAACTTTTTTGGTCTAGAAATACCTTAAATAATCACTTAAAATTTTTT-AAAAAG
*
150098 TATTATTTAAGGTATTTTTTATTAAAATACCTTAAATAATCACTTTCATTACTTATAAGATTTAA
64 TATTATTTAAGGTATTTTTTATTAAAAGACCTTAAATAATCACTTTCATTACTTATAAGATTTAA
* * * *
150163 GAGATAAAATATAAATAAATTAAAATAGTTTAGTTAATTAGAGTATAT
129 GAGATAAAATATAAATAAATTAAAATAATTCAATTAATTAGAGCATAT
150211 GGTTATTAAC
Statistics
Matches: 156, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
188 32 0.21
189 115 0.74
190 9 0.06
ACGTcount: A:0.42, C:0.07, G:0.08, T:0.43
Consensus pattern (189 bp):
GATTATTTAAAACTTTTTTGGTCTAGAAATACCTTAAATAATCACTTAAAATTTTTTAAAAAGTA
TTATTTAAGGTATTTTTTATTAAAAGACCTTAAATAATCACTTTCATTACTTATAAGATTTAAGA
GATAAAATATAAATAAATTAAAATAATTCAATTAATTAGAGCATATATATTTTGAAAAT
Found at i:151733 original size:17 final size:18
Alignment explanation
Indices: 151699--151740 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
151689 AATTGAATTG
*
151699 TAATAATATTAATTATTT
1 TAATAATATTAATCATTT
151717 TAATAAT-TTAATCATTT
1 TAATAATATTAATCATTT
151734 TAA-AATA
1 TAATAATA
151741 AAAAATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 3 0.14
17 12 0.55
18 7 0.32
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATATTAATCATTT
Found at i:157254 original size:7 final size:7
Alignment explanation
Indices: 157237--157289 Score: 67
Period size: 7 Copynumber: 7.9 Consensus size: 7
157227 GCGACTGCAG
157237 TAAAAAA
1 TAAAAAA
157244 -AAAAAA
1 TAAAAAA
157250 T--AAAA
1 TAAAAAA
157255 TAAAAAA
1 TAAAAAA
157262 TAAAAAA
1 TAAAAAA
157269 TAAAAAA
1 TAAAAAA
157276 TAAAGAAA
1 TAAA-AAA
*
157284 GAAAAA
1 TAAAAA
157290 TTTTTGTGGT
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
5 5 0.12
6 6 0.15
7 24 0.59
8 6 0.15
ACGTcount: A:0.85, C:0.00, G:0.04, T:0.11
Consensus pattern (7 bp):
TAAAAAA
Found at i:157266 original size:19 final size:18
Alignment explanation
Indices: 157237--157273 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
157227 GCGACTGCAG
157237 TAAAAAAAAAAAATAAAA
1 TAAAAAAAAAAAATAAAA
157255 TAAAAAATAAAAAATAAAA
1 TAAAAAA-AAAAAATAAAA
157274 AATAAAGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (18 bp):
TAAAAAAAAAAAATAAAA
Found at i:157312 original size:3 final size:3
Alignment explanation
Indices: 157304--157358 Score: 92
Period size: 3 Copynumber: 18.0 Consensus size: 3
157294 TGTGGTGCAC
*
157304 ATT ATT ATT ATT ATG ATT ATT ATTT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT
157350 ATT ATT ATT
1 ATT ATT ATT
157359 GTGAACGCAA
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
3 46 0.94
4 3 0.06
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:168945 original size:2 final size:2
Alignment explanation
Indices: 168938--168965 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
168928 GACCCAATCA
168938 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
168966 TCCATTTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:170718 original size:3 final size:3
Alignment explanation
Indices: 170712--170757 Score: 51
Period size: 3 Copynumber: 15.3 Consensus size: 3
170702 AATAATTAAC
*
170712 TAT TAT TAT TAT TAT TAT TAT TA- AAT TAT T-T TAT TAAT TAAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT T-AT TAT
170757 T
1 T
170758 TTTAAAGTGA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
2 3 0.08
3 28 0.74
4 7 0.18
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:170760 original size:17 final size:17
Alignment explanation
Indices: 170719--170761 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
170709 AACTATTATT
*
170719 ATTATTATTATTATTAA
1 ATTATTTTTATTATTAA
170736 ATTA-TTTTATTAATT-A
1 ATTATTTTTATT-ATTAA
170752 ATTATTTTTA
1 ATTATTTTTA
170762 AAGTGAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 11 0.48
17 12 0.52
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
ATTATTTTTATTATTAA
Found at i:170784 original size:22 final size:20
Alignment explanation
Indices: 170747--170806 Score: 59
Period size: 22 Copynumber: 2.9 Consensus size: 20
170737 TTATTTTATT
*
170747 AATTAA-TTATTTTTAAAGTGA
1 AATTAATTTATTATTAAA-T-A
170768 AATTAATTTATTATTAAATA
1 AATTAATTTATTATTAAATA
*
170788 ATATATAATTAATTATTAA
1 A-AT-TAATTTATTATTAA
170807 GCTATCAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
20 2 0.06
21 9 0.26
22 23 0.68
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (20 bp):
AATTAATTTATTATTAAATA
Found at i:171092 original size:22 final size:21
Alignment explanation
Indices: 171067--171197 Score: 91
Period size: 22 Copynumber: 5.9 Consensus size: 21
171057 ATAATTAACA
*
171067 ATTAAGTTATAATTTATTTATT
1 ATTAAGTTATAA-TCATTTATT
*
171089 ATTATGTTATCAATCATTTATT
1 ATTAAGTTAT-AATCATTTATT
*
171111 ATTAAGTTATTAATGATTTATT
1 ATTAAGTTA-TAATCATTTATT
* * * *
171133 ACTAAATTATTAATAATTTACT
1 ATTAAGTTA-TAATCATTTATT
* * *
171155 ATTTAATTTATGAATGATTTATC
1 A-TTAAGTTAT-AATCATTTATT
* *
171178 ATTAAATTATGAATAATTTA
1 ATTAAGTTAT-AATCATTTA
171198 CAATTAAATT
Statistics
Matches: 90, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
22 72 0.80
23 18 0.20
ACGTcount: A:0.39, C:0.04, G:0.05, T:0.52
Consensus pattern (21 bp):
ATTAAGTTATAATCATTTATT
Found at i:171131 original size:11 final size:11
Alignment explanation
Indices: 171082--171197 Score: 63
Period size: 11 Copynumber: 10.5 Consensus size: 11
171072 GTTATAATTT
*
171082 ATTTATT-ATT
1 ATTTATTAATA
* *
171092 ATGTTATCAATC
1 AT-TTATTAATA
*
171104 ATTTATTATTA
1 ATTTATTAATA
* *
171115 AGTTATTAATG
1 ATTTATTAATA
*
171126 ATTTATTACTA
1 ATTTATTAATA
*
171137 AATTATTAATA
1 ATTTATTAATA
* *
171148 ATTTACTATTTA
1 ATTTATTA-ATA
* *
171160 ATTTATGAATG
1 ATTTATTAATA
* *
171171 ATTTATCATTA
1 ATTTATTAATA
* *
171182 AATTATGAATA
1 ATTTATTAATA
171193 ATTTA
1 ATTTA
171198 CAATTAAATT
Statistics
Matches: 76, Mismatches: 27, Indels: 5
0.70 0.25 0.05
Matches are distributed among these distances:
10 2 0.03
11 62 0.82
12 12 0.16
ACGTcount: A:0.39, C:0.04, G:0.05, T:0.52
Consensus pattern (11 bp):
ATTTATTAATA
Found at i:171152 original size:44 final size:44
Alignment explanation
Indices: 171095--171391 Score: 202
Period size: 44 Copynumber: 6.5 Consensus size: 44
171085 TATTATTATG
* * *
171095 TTATCAATCATTTATTATTAAGTTATTAATGATTTATTACTAAA
1 TTATTAATAATTTATTATTAAATTATTAATGATTTATTACTAAA
* * * * *
171139 TTATTAATAATTTACTATTTAATTTATGAATGATTTATCATTAAA
1 TTATTAATAATTTATTA-TTAAATTATTAATGATTTATTACTAAA
* ** * * *
171184 TTATGAATAATTTACAATTAAATTATTATTGATTTGTCACTAAA
1 TTATTAATAATTTATTATTAAATTATTAATGATTTATTACTAAA
* * * * *
171228 TTATTGATGATTTATTATAAAATTA-TAACTTATTTATAACTAAA
1 TTATTAATAATTTATTATTAAATTATTAA-TGATTTATTACTAAA
* * * *
171272 TTATTAATAATTAATTAATTTACTACTAAATTATTACTAATTTATAACTTAA
1 TTATTAATAA-T--TT-A-TTA-T--TAAATTATTAATGATTTATTACTAAA
* * * * * * *
171324 TTATTAGTAATATACTACT-ATTCTATTAGTGATTTACTACTAAA
1 TTATTAATAATTTATTATTAAAT-TATTAATGATTTATTACTAAA
*
171368 TTATCAATAATTTATTATTAAATT
1 TTATTAATAATTTATTATTAAATT
171392 GTCAATAATT
Statistics
Matches: 194, Mismatches: 46, Indels: 26
0.73 0.17 0.10
Matches are distributed among these distances:
43 4 0.02
44 107 0.55
45 41 0.21
47 4 0.02
48 2 0.01
49 4 0.02
50 1 0.01
51 1 0.01
52 28 0.14
53 2 0.01
ACGTcount: A:0.41, C:0.07, G:0.04, T:0.48
Consensus pattern (44 bp):
TTATTAATAATTTATTATTAAATTATTAATGATTTATTACTAAA
Found at i:171218 original size:22 final size:22
Alignment explanation
Indices: 171111--171279 Score: 101
Period size: 22 Copynumber: 7.6 Consensus size: 22
171101 ATCATTTATT
* **
171111 ATTAAGTTATTAATGATTTATT
1 ATTAAATTATTAATGATTTACA
* *
171133 ACTAAATTATTAATAATTTACTA
1 ATTAAATTATTAATGATTTAC-A
* * *
171156 TTTAATTTATGAATGATTTATC-
1 ATTAAATTATTAATGATTTA-CA
* *
171178 ATTAAATTATGAATAATTTACA
1 ATTAAATTATTAATGATTTACA
* *
171200 ATTAAATTATTATTGATTTGTC-
1 ATTAAATTATTAATGATTT-ACA
* * **
171222 ACTAAATTATTGATGATTTATT
1 ATTAAATTATTAATGATTTACA
* * *
171244 ATAAAATTA-TAACTTATTTATA
1 ATTAAATTATTAA-TGATTTACA
*
171266 ACTAAATTATTAAT
1 ATTAAATTATTAAT
171280 AATTAATTAA
Statistics
Matches: 111, Mismatches: 29, Indels: 14
0.72 0.19 0.09
Matches are distributed among these distances:
21 3 0.03
22 88 0.79
23 19 0.17
24 1 0.01
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (22 bp):
ATTAAATTATTAATGATTTACA
Found at i:171275 original size:15 final size:15
Alignment explanation
Indices: 171257--171306 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
171247 AAATTATAAC
171257 TTATTTATAACTAAA
1 TTATTTATAACTAAA
* *
171272 TTATTAATAA-TTAA
1 TTATTTATAACTAAA
171286 TTAATTTACT-ACTAAA
1 TT-ATTTA-TAACTAAA
171302 TTATT
1 TTATT
171307 ACTAATTTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
14 5 0.18
15 17 0.61
16 6 0.21
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (15 bp):
TTATTTATAACTAAA
Found at i:171313 original size:22 final size:22
Alignment explanation
Indices: 171287--171391 Score: 97
Period size: 22 Copynumber: 4.8 Consensus size: 22
171277 AATAATTAAT
*
171287 TAATTTACTACTAAATTATTAC
1 TAATTTACTACTAAATTATTAG
*
171309 TAATTTA-TAACTTAATTATTAG
1 TAATTTACT-ACTAAATTATTAG
* *
171331 TAATATACTACT-ATTCTATTAG
1 TAATTTACTACTAAAT-TATTAG
* * *
171353 TGATTTACTACTAAATTATCAA
1 TAATTTACTACTAAATTATTAG
* *
171375 TAATTTATTATTAAATT
1 TAATTTACTACTAAATT
171392 GTCAATAATT
Statistics
Matches: 67, Mismatches: 12, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
21 3 0.04
22 61 0.91
23 3 0.04
ACGTcount: A:0.40, C:0.10, G:0.03, T:0.48
Consensus pattern (22 bp):
TAATTTACTACTAAATTATTAG
Found at i:171396 original size:22 final size:22
Alignment explanation
Indices: 171355--171408 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
171345 TCTATTAGTG
* *
171355 ATTTACTACTAAATTATCAATA
1 ATTTATTATTAAATTATCAATA
*
171377 ATTTATTATTAAATTGTCAATA
1 ATTTATTATTAAATTATCAATA
*
171399 ATTTTTTATT
1 ATTTATTATT
171409 GTATTATTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.52
Consensus pattern (22 bp):
ATTTATTATTAAATTATCAATA
Found at i:171554 original size:21 final size:22
Alignment explanation
Indices: 171529--171569 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
171519 AAGTTAATAT
171529 TGATTTA-TATTAAATTATCTA
1 TGATTTATTATTAAATTATCTA
171550 TGATTTATTATTAAATTATC
1 TGATTTATTATTAAATTATC
171570 ACCAATTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.54
Consensus pattern (22 bp):
TGATTTATTATTAAATTATCTA
Found at i:171765 original size:22 final size:22
Alignment explanation
Indices: 171722--171823 Score: 93
Period size: 22 Copynumber: 4.7 Consensus size: 22
171712 TATCAATTAA
*
171722 TTATTATTAAACTA--AACTAAT
1 TTATTATTAAATTATTAA-TAAT
* *
171743 TTACTATTAAATTATTACTAAT
1 TTATTATTAAATTATTAATAAT
* *
171765 TTATTATTAAGTTA-TAATTAT
1 TTATTATTAAATTATTAATAAT
* * *
171786 TTATTACTAAATTATCAATTAT
1 TTATTATTAAATTATTAATAAT
*
171808 TTTTTATTAAATTATT
1 TTATTATTAAATTATT
171824 CTTGATTTAC
Statistics
Matches: 65, Mismatches: 13, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
21 29 0.45
22 35 0.54
23 1 0.02
ACGTcount: A:0.40, C:0.06, G:0.01, T:0.53
Consensus pattern (22 bp):
TTATTATTAAATTATTAATAAT
Found at i:171815 original size:43 final size:44
Alignment explanation
Indices: 171710--171822 Score: 122
Period size: 43 Copynumber: 2.6 Consensus size: 44
171700 ATGATTTACT
* * *
171710 ATTATCAATTAATTATTATTAAACTA-AACTAATTTACTATTAA
1 ATTATCAATTATTTATTATTAAATTATAACTAATTTACTACTAA
* * * * * *
171753 ATTATTACTAATTTATTATTAAGTTATAA-TTATTTATTACTAA
1 ATTATCAATTATTTATTATTAAATTATAACTAATTTACTACTAA
*
171796 ATTATCAATTATTTTTTATTAAATTAT
1 ATTATCAATTATTTATTATTAAATTAT
171823 TCTTGATTTA
Statistics
Matches: 55, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
43 53 0.96
44 2 0.04
ACGTcount: A:0.42, C:0.06, G:0.01, T:0.51
Consensus pattern (44 bp):
ATTATCAATTATTTATTATTAAATTATAACTAATTTACTACTAA
Found at i:174919 original size:2 final size:2
Alignment explanation
Indices: 174912--174938 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
174902 TATGCGGTAA
174912 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
174939 AAATATAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:176921 original size:2 final size:2
Alignment explanation
Indices: 176914--176943 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
176904 AAAGTGCTAC
176914 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
176944 GCAATTTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:179257 original size:2 final size:2
Alignment explanation
Indices: 179250--179284 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
179240 GACGAAGAGA
179250 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
179285 GGAAAATGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:179700 original size:2 final size:2
Alignment explanation
Indices: 179689--179727 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
179679 ATATATCTGC
*
179689 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
179728 ACAGAATGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:193411 original size:38 final size:38
Alignment explanation
Indices: 193368--193443 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
193358 CTCCATAAAG
*
193368 AAACTAGTCTGAATCACCAATAAAGTAATTACCATCAT
1 AAACTAGTCTGAATCACCAAAAAAGTAATTACCATCAT
193406 AAACTAGTCTGAATCACCAAAAAAGTAATTACCATCAT
1 AAACTAGTCTGAATCACCAAAAAAGTAATTACCATCAT
193444 CAGAGACAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.46, C:0.21, G:0.08, T:0.25
Consensus pattern (38 bp):
AAACTAGTCTGAATCACCAAAAAAGTAATTACCATCAT
Found at i:196798 original size:103 final size:103
Alignment explanation
Indices: 196603--196805 Score: 316
Period size: 103 Copynumber: 2.0 Consensus size: 103
196593 CTTTATCAAG
* * * *
196603 ATTCACAAATGAATAAGAGATATTGTTAGTTCACATGTGAATAAAGAATTTCATATTATTAGAAA
1 ATTCACAAATGAACAAGAGATATTGTTAGTTCACATGTGAATAAAAAATTTCACATTATTAAAAA
* * * *
196668 ATTTGAATGAGATGTTATAGTTTACATGTGAGTGATAA
66 ATCTGAATGAAATGTCATAGTTCACATGTGAGTGATAA
*
196706 ATTCACAAGTGAACAAGAGATATTGTTAGTTCACATGTGAATAAAAAATTTCACATTATTAAAAA
1 ATTCACAAATGAACAAGAGATATTGTTAGTTCACATGTGAATAAAAAATTTCACATTATTAAAAA
*
196771 ATCTGAATGAAATGTCATGGTTCACATGTGAGTGA
66 ATCTGAATGAAATGTCATAGTTCACATGTGAGTGA
196806 GCATTATTAA
Statistics
Matches: 90, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
103 90 1.00
ACGTcount: A:0.41, C:0.08, G:0.17, T:0.33
Consensus pattern (103 bp):
ATTCACAAATGAACAAGAGATATTGTTAGTTCACATGTGAATAAAAAATTTCACATTATTAAAAA
ATCTGAATGAAATGTCATAGTTCACATGTGAGTGATAA
Found at i:197523 original size:14 final size:14
Alignment explanation
Indices: 197473--197535 Score: 54
Period size: 14 Copynumber: 4.3 Consensus size: 14
197463 ATTTAATTGC
**
197473 TTTTTTTTTTTTAA
1 TTTTTTTTTTTTTG
*
197487 TTTTTTCTTGTTCTTG
1 TTTTTT-TT-TTTTTG
197503 ATTTTTTTTTTTTTG
1 -TTTTTTTTTTTTTG
* *
197518 TTTTTTTATATTTG
1 TTTTTTTTTTTTTG
197532 TTTT
1 TTTT
197536 GGCCTTTGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
14 22 0.55
15 7 0.17
16 5 0.12
17 6 0.15
ACGTcount: A:0.08, C:0.03, G:0.06, T:0.83
Consensus pattern (14 bp):
TTTTTTTTTTTTTG
Found at i:209553 original size:2 final size:2
Alignment explanation
Indices: 209546--209607 Score: 97
Period size: 2 Copynumber: 31.0 Consensus size: 2
209536 GACTCTGCTT
209546 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
209588 TT TA TT TA TT TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA
209608 GACACACACC
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:214816 original size:2 final size:2
Alignment explanation
Indices: 214809--214836 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
214799 CCGTGAAACT
214809 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
214837 CTATCCTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:215087 original size:2 final size:2
Alignment explanation
Indices: 215080--215118 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
215070 TAGTTCGGCT
215080 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
215119 AAAGCCTAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:221262 original size:3 final size:3
Alignment explanation
Indices: 221254--221281 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
221244 TCTCAAATAA
221254 TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC T
221282 ACTATCTCGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:230763 original size:2 final size:2
Alignment explanation
Indices: 230756--230786 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
230746 TAATGGTATG
230756 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
230787 TTGCCTATGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:230906 original size:72 final size:72
Alignment explanation
Indices: 230829--230965 Score: 238
Period size: 72 Copynumber: 1.9 Consensus size: 72
230819 CTTTGATGAC
* *
230829 ATATATATATATATATATAACATAGAAAAATAGAATATAGTAAGTATCTGATACAATCATAAACA
1 ATATATATATATATATATAACATAGAAAAATAGAATATAGTAAGTATCTAATACAATAATAAACA
230894 CAAATAT
66 CAAATAT
* *
230901 ATATATATATATATATATAACATAGAAAACTAGAATATAGTAAGTATTTAATACAATAATAAACA
1 ATATATATATATATATATAACATAGAAAAATAGAATATAGTAAGTATCTAATACAATAATAAACA
230966 TATGAGATGT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 61 1.00
ACGTcount: A:0.55, C:0.07, G:0.07, T:0.31
Consensus pattern (72 bp):
ATATATATATATATATATAACATAGAAAAATAGAATATAGTAAGTATCTAATACAATAATAAACA
CAAATAT
Found at i:231195 original size:6 final size:6
Alignment explanation
Indices: 231184--231210 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
231174 TTAGTTAAGA
231184 TGGCAT TGGCAT TGGCAT TGGCAT TGG
1 TGGCAT TGGCAT TGGCAT TGGCAT TGG
231211 TAATGGCGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.15, G:0.37, T:0.33
Consensus pattern (6 bp):
TGGCAT
Found at i:251968 original size:2 final size:2
Alignment explanation
Indices: 251963--251995 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
251953 AGTTTGTGTG
251963 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
251996 TGAAAAAATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:252954 original size:30 final size:30
Alignment explanation
Indices: 252920--252982 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
252910 GTTTGAAATC
*
252920 AATTTAATTGATGATGCCTATATAGTAATT
1 AATTTAATTGATGATGCCTATATAGTAACT
252950 AATTTAATTGATGATGCCTATATAGTAACT
1 AATTTAATTGATGATGCCTATATAGTAACT
252980 AAT
1 AAT
252983 AGTATAGTGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.38, C:0.08, G:0.13, T:0.41
Consensus pattern (30 bp):
AATTTAATTGATGATGCCTATATAGTAACT
Found at i:257161 original size:15 final size:17
Alignment explanation
Indices: 257141--257173 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
257131 AATCGAAGAG
257141 AAAAAGA-AAA-AAAAA
1 AAAAAGAGAAAGAAAAA
257156 AAAAAGAGAAAGAAAAA
1 AAAAAGAGAAAGAAAAA
257173 A
1 A
257174 CCATTGAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 3 0.19
17 6 0.38
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (17 bp):
AAAAAGAGAAAGAAAAA
Found at i:267314 original size:3 final size:3
Alignment explanation
Indices: 267306--267342 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
267296 TTTTTAACTT
*
267306 TTA TTA TTA TTA TTA TTA TTA TTC TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
267343 AAAACCGCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:268226 original size:2 final size:2
Alignment explanation
Indices: 268219--268246 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
268209 TAAATTAAGC
268219 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
268247 GCTTGTTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:270849 original size:46 final size:46
Alignment explanation
Indices: 270782--270875 Score: 125
Period size: 46 Copynumber: 2.0 Consensus size: 46
270772 TTAAGCATTC
* *
270782 AACTTCAAACCAATTAGCGATAAATGAAGGGGCCCATCCTGAATAT
1 AACTTCAAACCAATTAGCGATAAATGAAGGGACCCAACCTGAATAT
* * * * *
270828 AACTTCAAACTAATTGGCGATAAGTGGAGGGACTCAACCTGAATAT
1 AACTTCAAACCAATTAGCGATAAATGAAGGGACCCAACCTGAATAT
270874 AA
1 AA
270876 GACTATAAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.22
Consensus pattern (46 bp):
AACTTCAAACCAATTAGCGATAAATGAAGGGACCCAACCTGAATAT
Found at i:271397 original size:168 final size:168
Alignment explanation
Indices: 271119--271453 Score: 600
Period size: 168 Copynumber: 2.0 Consensus size: 168
271109 GACGAATCTA
*
271119 AATATAAGACTATAAGAAATTGAAAATTTATTAGATGTGAGATAACTCACTTTAACAGTGATAAT
1 AATATAAGACTATAAGAAATTGAAAATTTATTAGATGTGAGATAACTCACTTTAACAGTGATAAC
* *
271184 CCAGTTTAATTGGCTTTCAATATATTAAGCATCCAACTTCAAACCAATTTATGGTAGGTGGATGG
66 CCAGTTTAATTGGCTTTCAATATATTAAGCATCCAACTTCAAACCAATTTATGGTAGGTAGAGGG
*
271249 ATCCAACCTGAATATAAGTTTAGAAGAAATTAGATATG
131 ATCCAACCTGAATATAAGTTTAGAAGAAATTAAATATG
*
271287 AATATAAGATTATAAGAAATTGAAAATTTATTAGATGTGAGATAACTCACTTTAACAGTGATAAC
1 AATATAAGACTATAAGAAATTGAAAATTTATTAGATGTGAGATAACTCACTTTAACAGTGATAAC
*
271352 CCAGTTTAATTGGCTTTC-ATCATATTAAGTATCCAACTTCAAACCAATTTATGGTAGGTAGAGG
66 CCAGTTTAATTGGCTTTCAAT-ATATTAAGCATCCAACTTCAAACCAATTTATGGTAGGTAGAGG
271416 GATCCAACCTGAATATAAGTTTAGAAGAAATTAAATAT
130 GATCCAACCTGAATATAAGTTTAGAAGAAATTAAATAT
271454 TTATTAGATG
Statistics
Matches: 160, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
167 2 0.01
168 158 0.99
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (168 bp):
AATATAAGACTATAAGAAATTGAAAATTTATTAGATGTGAGATAACTCACTTTAACAGTGATAAC
CCAGTTTAATTGGCTTTCAATATATTAAGCATCCAACTTCAAACCAATTTATGGTAGGTAGAGGG
ATCCAACCTGAATATAAGTTTAGAAGAAATTAAATATG
Found at i:271720 original size:117 final size:116
Alignment explanation
Indices: 271505--271742 Score: 284
Period size: 117 Copynumber: 2.0 Consensus size: 116
271495 CGTGTAAACG
*** * * *
271505 AACCTGAATATAAGATCATAAGAAAATAAGACCTCATCATATGTAGGTGATTTTAAATATAAGAC
1 AACCTGAATATAAGATCATAAGAAAATAAGACCTCATCATATGTAGACAAATCTAAATATAAAAC
* * * *
271570 TATAAGAAATTGAATATTTATTAAATGTAGGATAACCCATTTTATCAGTGAT
66 TATAAAAAATTGAATATTTATTAAATATAGGATAA-CCACTTTAACAGTGAT
* * *
271622 AACCTGAATATAAGA-CTATAAGAAAAT-AGACTTTTATCATATGTAGACAAATCTGAATATAAA
1 AACCTGAATATAAGATC-ATAAGAAAATAAGAC-CTCATCATATGTAGACAAATCTAAATATAAA
* *
271685 ACTATAAAAAATT-ATATATTTATTAGATATGGGATAACCACTTTAACAGTGAT
64 ACTATAAAAAATTGA-ATATTTATTAAATATAGGATAACCACTTTAACAGTGAT
271738 AACCT
1 AACCT
271743 ACTTTAACAG
Statistics
Matches: 103, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
116 25 0.24
117 78 0.76
ACGTcount: A:0.45, C:0.11, G:0.12, T:0.32
Consensus pattern (116 bp):
AACCTGAATATAAGATCATAAGAAAATAAGACCTCATCATATGTAGACAAATCTAAATATAAAAC
TATAAAAAATTGAATATTTATTAAATATAGGATAACCACTTTAACAGTGAT
Found at i:271740 original size:18 final size:19
Alignment explanation
Indices: 271717--271752 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
271707 TTAGATATGG
271717 GATAACC-ACTTTAACAGT
1 GATAACCTACTTTAACAGT
271735 GATAACCTACTTTAACAG
1 GATAACCTACTTTAACAG
271753 GTCTTCACGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (19 bp):
GATAACCTACTTTAACAGT
Found at i:272917 original size:16 final size:15
Alignment explanation
Indices: 272890--272925 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
272880 ATAAATAAAC
272890 AGGAAAAAGGAAAAA
1 AGGAAAAAGGAAAAA
*
272905 AGGAAAAAGGGAAAGA
1 AGGAAAAA-GGAAAAA
272921 AGGAA
1 AGGAA
272926 TAAGCAGTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (15 bp):
AGGAAAAAGGAAAAA
Found at i:273432 original size:3 final size:3
Alignment explanation
Indices: 273424--273454 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
273414 ATCAGGAATT
*
273424 GAA GAA GAA AAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
273455 CAGGTAACAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:274409 original size:112 final size:112
Alignment explanation
Indices: 274212--274434 Score: 383
Period size: 112 Copynumber: 2.0 Consensus size: 112
274202 ATGCTAGTAC
* *
274212 AGTAATATGCATATTAATCGTTCTTTTCAATTTTTAGTATCTGGAACATGCGTGTTGCTCATGTG
1 AGTAATATGCATATTAATCGTTCTTTCCAATTTTTAGTATCTGGAACACGCGTGTTGCTCATGTG
* *
274277 ATGACTATTTTTCTGAAAAAGCTGTCAATTTTATCCACTGTGCCTTG
66 ATGACTATTTCTCTGAAAAAGCTGTCAATGTTATCCACTGTGCCTTG
*
274324 AGTAATATGCATATTAATTGTTCTTTCCAATTTTTAGTATCTGGAACACGCGTGTTGCTCATGTG
1 AGTAATATGCATATTAATCGTTCTTTCCAATTTTTAGTATCTGGAACACGCGTGTTGCTCATGTG
* *
274389 ATGTCTATTTCTCTGAAAAAGCTGTCAGTGTTATCCACTGTGCCTT
66 ATGACTATTTCTCTGAAAAAGCTGTCAATGTTATCCACTGTGCCTT
274435 CTTTCATCCC
Statistics
Matches: 104, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
112 104 1.00
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.41
Consensus pattern (112 bp):
AGTAATATGCATATTAATCGTTCTTTCCAATTTTTAGTATCTGGAACACGCGTGTTGCTCATGTG
ATGACTATTTCTCTGAAAAAGCTGTCAATGTTATCCACTGTGCCTTG
Found at i:276860 original size:3 final size:3
Alignment explanation
Indices: 276852--276895 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
276842 GACGTACTTT
276852 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
276896 TTAACATTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:278897 original size:25 final size:25
Alignment explanation
Indices: 278869--278916 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
278859 TTAATTATCC
278869 AATGATGAAATTTATA-AAAATTTCA
1 AATGAT-AAATTTATATAAAATTTCA
*
278894 AATGATAAATTTTTATAAAATTT
1 AATGATAAATTTATATAAAATTT
278917 TTAAGTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.50, C:0.02, G:0.06, T:0.42
Consensus pattern (25 bp):
AATGATAAATTTATATAAAATTTCA
Found at i:279467 original size:58 final size:58
Alignment explanation
Indices: 279366--279495 Score: 140
Period size: 58 Copynumber: 2.3 Consensus size: 58
279356 TTTTGAAGAT
* * * * * *
279366 AAAAAAAAATAAAAAAATATTTCTAAATTGACTCAAATTGTGAAAAATTTAGAAA-TC
1 AAAAATAAATAAATAAATATTTATAAATAGACCCAAATGGTGAAAAATTTAGAAATTC
* * *
279423 TAATAAATAAATAAATAAA-ATTTATAAATAGGCCCAAATGGTGAAAATTTTAGGAATTC
1 -AA-AAATAAATAAATAAATATTTATAAATAGACCCAAATGGTGAAAAATTTAGAAATTC
279482 AAAAATAAA-AAATA
1 AAAAATAAATAAATA
279496 TTTTTAATTT
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
56 5 0.08
57 7 0.11
58 34 0.56
59 15 0.25
ACGTcount: A:0.58, C:0.06, G:0.08, T:0.28
Consensus pattern (58 bp):
AAAAATAAATAAATAAATATTTATAAATAGACCCAAATGGTGAAAAATTTAGAAATTC
Found at i:281382 original size:15 final size:15
Alignment explanation
Indices: 281362--281390 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
281352 TTCAATTACA
281362 ATTAAAAAATAATTG
1 ATTAAAAAATAATTG
281377 ATTAAAAAATAATT
1 ATTAAAAAATAATT
281391 AAAAGTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (15 bp):
ATTAAAAAATAATTG
Found at i:282764 original size:30 final size:30
Alignment explanation
Indices: 282727--282847 Score: 143
Period size: 30 Copynumber: 4.0 Consensus size: 30
282717 AAAAAACCTG
*
282727 AACCTGAAAAGCCTAAAGAACCCGAGAAGA
1 AACCTGAAAAGCCTAAAGAACCCGAAAAGA
* * * * * *
282757 AATCTGAAAAGCCCAAGGAGCCTGAGAAGA
1 AACCTGAAAAGCCTAAAGAACCCGAAAAGA
*
282787 AACCTGAAAAGCCTAAAGAACCTGAAAAGA
1 AACCTGAAAAGCCTAAAGAACCCGAAAAGA
* * *
282817 AACCTGAGAAGCCGAAAGAGCCCGAAAAGA
1 AACCTGAAAAGCCTAAAGAACCCGAAAAGA
282847 A
1 A
282848 GCCAGAGAAA
Statistics
Matches: 77, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 77 1.00
ACGTcount: A:0.49, C:0.21, G:0.22, T:0.07
Consensus pattern (30 bp):
AACCTGAAAAGCCTAAAGAACCCGAAAAGA
Found at i:282793 original size:60 final size:60
Alignment explanation
Indices: 282727--282847 Score: 170
Period size: 60 Copynumber: 2.0 Consensus size: 60
282717 AAAAAACCTG
* * * * *
282727 AACCTGAAAAGCCTAAAGAACCCGAGAAGAAATCTGAAAAGCCCAAGGAGCCTGAGAAGA
1 AACCTGAAAAGCCTAAAGAACCCGAAAAGAAACCTGAAAAGCCCAAAGAGCCCGAAAAGA
* * *
282787 AACCTGAAAAGCCTAAAGAACCTGAAAAGAAACCTGAGAAGCCGAAAGAGCCCGAAAAGA
1 AACCTGAAAAGCCTAAAGAACCCGAAAAGAAACCTGAAAAGCCCAAAGAGCCCGAAAAGA
282847 A
1 A
282848 GCCAGAGAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
60 53 1.00
ACGTcount: A:0.49, C:0.21, G:0.22, T:0.07
Consensus pattern (60 bp):
AACCTGAAAAGCCTAAAGAACCCGAAAAGAAACCTGAAAAGCCCAAAGAGCCCGAAAAGA
Found at i:282856 original size:30 final size:30
Alignment explanation
Indices: 282735--282867 Score: 95
Period size: 30 Copynumber: 4.4 Consensus size: 30
282725 TGAACCTGAA
* * * * *
282735 AAGCCTAAAGAACCCGAGAAGAAATCTGAA
1 AAGCCAAAAGAACCCGAAAAGAAACCAGAG
* * * * * * *
282765 AAGCCCAAGGAGCCTGAGAAGAAACCTGAA
1 AAGCCAAAAGAACCCGAAAAGAAACCAGAG
* * *
282795 AAGCCTAAAGAACCTGAAAAGAAACCTGAG
1 AAGCCAAAAGAACCCGAAAAGAAACCAGAG
* * *
282825 AAGCCGAAAGAGCCCGAAAAGAAGCCAGAG
1 AAGCCAAAAGAACCCGAAAAGAAACCAGAG
*
282855 AAACCAAAAGAAC
1 AAGCCAAAAGAAC
282868 AGGAAAAATC
Statistics
Matches: 85, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 85 1.00
ACGTcount: A:0.50, C:0.22, G:0.23, T:0.06
Consensus pattern (30 bp):
AAGCCAAAAGAACCCGAAAAGAAACCAGAG
Found at i:282865 original size:60 final size:60
Alignment explanation
Indices: 282727--282867 Score: 149
Period size: 60 Copynumber: 2.4 Consensus size: 60
282717 AAAAAACCTG
* * * * * * *
282727 AACCTGAAAAGCCTAAAGAACCCGAGAAGAAATCTGAAAAGCCCAAGGAGCCTGAGAAGA
1 AACCAGAAAAGCCAAAAGAACCCGAAAAGAAACCTGAAAAGCCCAAAGAGCCCGAAAAGA
* * * * *
282787 AACCTGAAAAGCCTAAAGAACCTGAAAAGAAACCTGAGAAGCCGAAAGAGCCCGAAAAGA
1 AACCAGAAAAGCCAAAAGAACCCGAAAAGAAACCTGAAAAGCCCAAAGAGCCCGAAAAGA
*
282847 AGCCAGAGAAA-CCAAAAGAAC
1 AACCAGA-AAAGCCAAAAGAAC
282868 AGGAAAAATC
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
60 66 0.96
61 3 0.04
ACGTcount: A:0.50, C:0.22, G:0.22, T:0.06
Consensus pattern (60 bp):
AACCAGAAAAGCCAAAAGAACCCGAAAAGAAACCTGAAAAGCCCAAAGAGCCCGAAAAGA
Found at i:286345 original size:30 final size:30
Alignment explanation
Indices: 286311--286438 Score: 166
Period size: 30 Copynumber: 4.3 Consensus size: 30
286301 CAAGGAGCCT
286311 GAGAAGAAACCTGAAAAGCCTAAAGAACCC
1 GAGAAGAAACCTGAAAAGCCTAAAGAACCC
** * * *
286341 GAGAAGAAACCTGAAAAGCCCGAGGAGCCT
1 GAGAAGAAACCTGAAAAGCCTAAAGAACCC
*
286371 GAGAAGAAACCTGAAAAGCCTAAAGAACCT
1 GAGAAGAAACCTGAAAAGCCTAAAGAACCC
* * *
286401 GAAAAGAAACCTGAGAAGCCTAAAGAGCCC
1 GAGAAGAAACCTGAAAAGCCTAAAGAACCC
*
286431 GAAAAGAA
1 GAGAAGAA
286439 GCCAGAGAAA
Statistics
Matches: 85, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 85 1.00
ACGTcount: A:0.48, C:0.21, G:0.23, T:0.07
Consensus pattern (30 bp):
GAGAAGAAACCTGAAAAGCCTAAAGAACCC
Found at i:286396 original size:60 final size:60
Alignment explanation
Indices: 286295--286438 Score: 209
Period size: 60 Copynumber: 2.4 Consensus size: 60
286285 CACCATCTCC
*
286295 AAAA-CCCAAGGAGCCTGAGAAGAAACCTGAAAAGCCTAAAGAACCCGAGAAGAAACCTG
1 AAAAGCCCAAGGAGCCTGAGAAGAAACCTGAAAAGCCTAAAGAACCCGAAAAGAAACCTG
* *
286354 AAAAGCCCGAGGAGCCTGAGAAGAAACCTGAAAAGCCTAAAGAACCTGAAAAGAAACCTG
1 AAAAGCCCAAGGAGCCTGAGAAGAAACCTGAAAAGCCTAAAGAACCCGAAAAGAAACCTG
* * * * *
286414 AGAAGCCTAAAGAGCCCGAAAAGAA
1 AAAAGCCCAAGGAGCCTGAGAAGAA
286439 GCCAGAGAAA
Statistics
Matches: 75, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
59 4 0.05
60 71 0.95
ACGTcount: A:0.48, C:0.22, G:0.23, T:0.07
Consensus pattern (60 bp):
AAAAGCCCAAGGAGCCTGAGAAGAAACCTGAAAAGCCTAAAGAACCCGAAAAGAAACCTG
Found at i:287571 original size:80 final size:80
Alignment explanation
Indices: 287437--287589 Score: 270
Period size: 80 Copynumber: 1.9 Consensus size: 80
287427 ATATCCTGGC
* * *
287437 TGTAAAATATGAACGAGTCATTTCAAAGTCGTCTCTGACGGTTGCCGCATATTATTAAGCATACG
1 TGTAAAATATGAACGAGTCATGTCAAAGTCGTCTCTGACAGTTGCCGCAAATTATTAAGCATACG
287502 GATGCGCCTTATAAA
66 GATGCGCCTTATAAA
*
287517 TGTAAAATATGAACGAGTCATGTCAAAGTCGTCTCTGACAGTTGCTGCAAATTATTAAGCATACG
1 TGTAAAATATGAACGAGTCATGTCAAAGTCGTCTCTGACAGTTGCCGCAAATTATTAAGCATACG
287582 GATGCGCC
66 GATGCGCC
287590 GCGTAAATGT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 69 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (80 bp):
TGTAAAATATGAACGAGTCATGTCAAAGTCGTCTCTGACAGTTGCCGCAAATTATTAAGCATACG
GATGCGCCTTATAAA
Found at i:289043 original size:42 final size:42
Alignment explanation
Indices: 288986--289085 Score: 155
Period size: 42 Copynumber: 2.4 Consensus size: 42
288976 ATCAAACCAC
* *
288986 CACCGCCACCGCCACCTCTAAAACCACCACAACGACCACCGT
1 CACCACCACCGCCACCTATAAAACCACCACAACGACCACCGT
*
289028 CACCACCACCGCCACCTATAAAACCAGCACAACGACCACCGT
1 CACCACCACCGCCACCTATAAAACCACCACAACGACCACCGT
* *
289070 CACCATCACCACCACC
1 CACCACCACCGCCACC
289086 GCCAATTGTC
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.33, C:0.52, G:0.08, T:0.07
Consensus pattern (42 bp):
CACCACCACCGCCACCTATAAAACCACCACAACGACCACCGT
Found at i:289169 original size:3 final size:3
Alignment explanation
Indices: 289161--289199 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
289151 ACATTGGTGG
289161 ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC
1 ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC
289200 GCTAATTGTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.67, G:0.00, T:0.00
Consensus pattern (3 bp):
ACC
Found at i:289256 original size:114 final size:114
Alignment explanation
Indices: 289070--289285 Score: 378
Period size: 114 Copynumber: 1.9 Consensus size: 114
289060 CGACCACCGT
*
289070 CACCATCACCACCACCGCCAATTGTCAATCCTGGGTTTTGTTGCACGGATTGTTATCATGGACGT
1 CACCACCACCACCACCGCCAATTGTCAATCCTGGGTTTTGTTGCACGGATTGTTATCATGGACGT
*
289135 GGTGGGGGCCCTTGCTACATTGGTGGACCACCACCACCACCACCACCAC
66 GGTGGGGGCCCTTGCTACAATGGTGGACCACCACCACCACCACCACCAC
* **
289184 CACCACCACCACCACCGCTAATTGTCTTTCCTGGGTTTTGTTGCACGGATTGTTATCATGGACGT
1 CACCACCACCACCACCGCCAATTGTCAATCCTGGGTTTTGTTGCACGGATTGTTATCATGGACGT
*
289249 GGTGGGGGCCCTTGCTACAATGGTGGACCACCCCCAC
66 GGTGGGGGCCCTTGCTACAATGGTGGACCACCACCAC
289286 GCCCATGTTA
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
114 96 1.00
ACGTcount: A:0.19, C:0.33, G:0.23, T:0.25
Consensus pattern (114 bp):
CACCACCACCACCACCGCCAATTGTCAATCCTGGGTTTTGTTGCACGGATTGTTATCATGGACGT
GGTGGGGGCCCTTGCTACAATGGTGGACCACCACCACCACCACCACCAC
Found at i:290675 original size:2 final size:2
Alignment explanation
Indices: 290668--290693 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
290658 GTTGCATCGA
290668 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
290694 GGGCGCATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:291387 original size:5 final size:5
Alignment explanation
Indices: 291371--291407 Score: 60
Period size: 5 Copynumber: 7.8 Consensus size: 5
291361 ACTTTTCTTT
291371 TTAT- TTAT- TTATA TTATA TTATA TTATA TTATA TTAT
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTAT
291408 TGTTTTAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 8 0.25
5 24 0.75
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (5 bp):
TTATA
Found at i:295043 original size:2 final size:2
Alignment explanation
Indices: 295036--295064 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
295026 TAATTTGGAT
295036 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
295065 TACAAGGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:296634 original size:58 final size:58
Alignment explanation
Indices: 296527--296643 Score: 162
Period size: 58 Copynumber: 2.0 Consensus size: 58
296517 AAATGGTAAA
* *
296527 TGTAGACACCCAAATTGGTCCAGGCCCGGATCAATTGGGCCTAGCCCAAATAGGTAGG
1 TGTAGACACCCAAATTGATCCAGGCCCGGATCAATTGAGCCTAGCCCAAATAGGTAGG
* * * * * *
296585 TGTAGACACCCAATTTGATCGAGGCCCGGATCAATTGAGCTTGGTCCAAATGGGTAGG
1 TGTAGACACCCAAATTGATCCAGGCCCGGATCAATTGAGCCTAGCCCAAATAGGTAGG
296643 T
1 T
296644 TCAATTTTAT
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.22
Consensus pattern (58 bp):
TGTAGACACCCAAATTGATCCAGGCCCGGATCAATTGAGCCTAGCCCAAATAGGTAGG
Found at i:296672 original size:6 final size:6
Alignment explanation
Indices: 296661--296695 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
296651 TATCTTTGTC
296661 ATTTTT ATTTTT ATTTTT A-TTTT ATTTTAT ATTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTT-T ATTTT
296696 ATGTATATCC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.19
6 16 0.59
7 6 0.22
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
ATTTTT
Found at i:296696 original size:12 final size:12
Alignment explanation
Indices: 296663--296697 Score: 56
Period size: 11 Copynumber: 3.1 Consensus size: 12
296653 TCTTTGTCAT
296663 TTTTAT-TTTTA
1 TTTTATATTTTA
296674 TTTT-TATTTTA
1 TTTTATATTTTA
296685 TTTTATATTTTA
1 TTTTATATTTTA
296697 T
1 T
296698 GTATATCCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 13 0.59
12 8 0.36
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (12 bp):
TTTTATATTTTA
Found at i:296727 original size:16 final size:16
Alignment explanation
Indices: 296706--296795 Score: 64
Period size: 16 Copynumber: 5.6 Consensus size: 16
296696 ATGTATATCC
296706 TATGTATTTTATTATT
1 TATGTATTTTATTATT
* *
296722 TATGTATTATTACTA-A
1 TATGTATT-TTATTATT
*
296738 TATATATTTATATATATT
1 TATGTATTT-TAT-TATT
296756 TAT-TATTTT-TTATCT
1 TATGTATTTTATTAT-T
296771 T-T-TATTTTATTTATT
1 TATGTATTTTA-TTATT
*
296786 TTTGTATTTT
1 TATGTATTTT
296796 TATTTATCTA
Statistics
Matches: 60, Mismatches: 5, Indels: 17
0.73 0.06 0.21
Matches are distributed among these distances:
14 10 0.17
15 6 0.10
16 23 0.38
17 18 0.30
18 3 0.05
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.68
Consensus pattern (16 bp):
TATGTATTTTATTATT
Found at i:296801 original size:22 final size:22
Alignment explanation
Indices: 296752--296802 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 22
296742 TATTTATATA
296752 TATTTA-TTATTTTTTATCTTT
1 TATTTATTTATTTTTTATCTTT
296773 TATTTTATTTATTTTTGTAT-TTT
1 TA-TTTATTTATTTTT-TATCTTT
296796 TATTTAT
1 TATTTAT
296803 CTAATTATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
21 2 0.07
22 9 0.33
23 13 0.48
24 3 0.11
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (22 bp):
TATTTATTTATTTTTTATCTTT
Found at i:297392 original size:19 final size:20
Alignment explanation
Indices: 297368--297411 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
297358 TCGATGAACC
*
297368 TCCGGTGAATTTTT-CAGAT
1 TCCGGTGAATTTTTCCAGAA
*
297387 TCCGGTGACTTTTTCCAGAA
1 TCCGGTGAATTTTTCCAGAA
297407 TCCGG
1 TCCGG
297412 CAAAAATTCG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (20 bp):
TCCGGTGAATTTTTCCAGAA
Found at i:297750 original size:11 final size:11
Alignment explanation
Indices: 297734--297759 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
297724 CCAAGTTTTT
297734 TTTTTTTTGAA
1 TTTTTTTTGAA
297745 TTTTTTTTGAA
1 TTTTTTTTGAA
297756 TTTT
1 TTTT
297760 CATTTATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:298075 original size:57 final size:57
Alignment explanation
Indices: 297925--298199 Score: 397
Period size: 57 Copynumber: 4.7 Consensus size: 57
297915 AATAAAAATA
** * *
297925 AAAAAATATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTGGAAATCAAAGTTTC
1 AAAAAA-ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT-AAA-TTTC
* * *
297985 AAAAAAAAATATCTTTGAGGAAAAGTTGAAAGTATCAATTCTCCTTAGAAATAAATTTC
1 --AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
298044 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
*
298101 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAATAAATTTC
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT-AGAAATAAATTTC
**
298159 AAAAAAATAATTTTTGGAAAAAAGTTGAAAGTATCAATTTT
1 AAAAAAAT-ATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
298200 TCCTACACAA
Statistics
Matches: 200, Mismatches: 11, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
57 98 0.49
58 20 0.10
59 34 0.17
60 3 0.01
61 39 0.19
62 6 0.03
ACGTcount: A:0.46, C:0.07, G:0.13, T:0.34
Consensus pattern (57 bp):
AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
Found at i:304162 original size:19 final size:19
Alignment explanation
Indices: 304140--304196 Score: 71
Period size: 19 Copynumber: 3.0 Consensus size: 19
304130 AACAATAGGT
304140 GAAGAATGAGAAAAAAAAA
1 GAAGAATGAGAAAAAAAAA
304159 GAAG-ATGATGAAAAAAAAA
1 GAAGAATGA-GAAAAAAAAA
* **
304178 GAAAAAAAAGAAAAAAAAA
1 GAAGAATGAGAAAAAAAAA
304197 TAAAGAAAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 4 0.12
19 27 0.82
20 2 0.06
ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05
Consensus pattern (19 bp):
GAAGAATGAGAAAAAAAAA
Found at i:304173 original size:1 final size:1
Alignment explanation
Indices: 304169--304240 Score: 54
Period size: 1 Copynumber: 72.0 Consensus size: 1
304159 GAAGATGATG
* * * * * * ** * *
304169 AAAAAAAAAGAAAAAAAAGAAAAAAAAATAAAGAAAGAAGAAAAAATGAAAAAAATAAAAAAATA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
304234 AAAAAAA
1 AAAAAAA
304241 GATTCAAATT
Statistics
Matches: 52, Mismatches: 19, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 52 1.00
ACGTcount: A:0.86, C:0.00, G:0.08, T:0.06
Consensus pattern (1 bp):
A
Found at i:304184 original size:8 final size:8
Alignment explanation
Indices: 304171--304239 Score: 63
Period size: 8 Copynumber: 8.9 Consensus size: 8
304161 AGATGATGAA
304171 AAAAAAAG
1 AAAAAAAG
304179 AAAAAAA-
1 AAAAAAAG
304186 AGAAAAAA-
1 A-AAAAAAG
*
304194 AAATAAAG
1 AAAAAAAG
*
304202 -AAAGAAG
1 AAAAAAAG
*
304209 AAAAAATG
1 AAAAAAAG
*
304217 AAAAAAAT
1 AAAAAAAG
*
304225 AAAAAAAT
1 AAAAAAAG
304233 AAAAAAA
1 AAAAAAA
304240 AGATTCAAAT
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
7 11 0.22
8 40 0.78
ACGTcount: A:0.86, C:0.00, G:0.09, T:0.06
Consensus pattern (8 bp):
AAAAAAAG
Found at i:304184 original size:9 final size:9
Alignment explanation
Indices: 304170--304242 Score: 71
Period size: 9 Copynumber: 8.1 Consensus size: 9
304160 AAGATGATGA
304170 AAAAAAAAG
1 AAAAAAAAG
304179 AAAAAAAAG
1 AAAAAAAAG
304188 AAAAAAAA-
1 AAAAAAAAG
*
304196 ATAAAGAAAG
1 A-AAAAAAAG
304206 AAGAAAAAATG
1 AA-AAAAAA-G
304217 -AAAAAAA-
1 AAAAAAAAG
* *
304224 TAAAAAAAT
1 AAAAAAAAG
304233 AAAAAAAAG
1 AAAAAAAAG
304242 A
1 A
304243 TTCAAATTGA
Statistics
Matches: 54, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
8 8 0.15
9 38 0.70
10 7 0.13
11 1 0.02
ACGTcount: A:0.85, C:0.00, G:0.10, T:0.05
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:304205 original size:27 final size:26
Alignment explanation
Indices: 304171--304242 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 26
304161 AGATGATGAA
304171 AAAAAAAGAAAAAAAAGAAAAAAAAAT
1 AAAAAAAGAAAAAAAAG-AAAAAAAAT
*
304198 AAAGAAAGAAGAAAAAATG-AAAAAAAT
1 AAAAAAAGAA-AAAAAA-GAAAAAAAAT
*
304225 AAAAAAATAAAAAAAAGA
1 AAAAAAAGAAAAAAAAGA
304243 TTCAAATTGA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
25 1 0.03
26 6 0.15
27 25 0.64
28 6 0.15
29 1 0.03
ACGTcount: A:0.85, C:0.00, G:0.10, T:0.06
Consensus pattern (26 bp):
AAAAAAAGAAAAAAAAGAAAAAAAAT
Found at i:305473 original size:42 final size:41
Alignment explanation
Indices: 305426--305847 Score: 557
Period size: 42 Copynumber: 10.1 Consensus size: 41
305416 TGATTGTCAG
* * *
305426 GGAGCAATTTACTTTTCAAAAGTCATGGTGCCACTGTTGAGA
1 GGAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAGA
* *
305468 GGAGCAATTTACTTTCCAAAAGTCATGGTGCCTCTGTTTAGA
1 GGAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAGA
*
305510 GGAGCAATTTACTTTTCCAAAGTTCCGT--TGCCTCTATTTAGA
1 GGAGCAATTTACTTTT-CAAAG-T-CGTGGTGCCTCTGTTTAGA
305552 GGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAGA
1 GGAGCAATTTAC-TTTTCAAAGTCGTGGTGCCTCTGTTTAGA
*
305594 GGAGCAATTTA-TTTTCAAAGTCGTGGTGCCTCTATTTAGA
1 GGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGA
* * * *
305634 AGAGCAATTTACATTCCAAAGCCGTGGTGCCTCTGTTTAGA
1 GGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGA
* *
305675 GGAGCAATTTACCTTTCCAAAGTTTCGT--TGCCTCTATTTAGA
1 GGAGCAATTTA-CTTTTCAAAG--TCGTGGTGCCTCTGTTTAGA
305717 GGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGA
1 GGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGA
305758 GGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGA
1 GGAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAGA
* * *
305800 GGAGCAATTTATGTTTCTCAAAGTCGTTGAGCCTCTGTTTAGA
1 GGAGCAATTTA-CTTT-TCAAAGTCGTGGTGCCTCTGTTTAGA
305843 GGAGC
1 GGAGC
305848 TTCGGTAAAA
Statistics
Matches: 343, Mismatches: 22, Indels: 29
0.87 0.06 0.07
Matches are distributed among these distances:
39 4 0.01
40 41 0.12
41 75 0.22
42 180 0.52
43 36 0.10
44 7 0.02
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (41 bp):
GGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGA
Found at i:305737 original size:83 final size:82
Alignment explanation
Indices: 305426--305847 Score: 564
Period size: 83 Copynumber: 5.1 Consensus size: 82
305416 TGATTGTCAG
* * * * * *
305426 GGAGCAATTTACTTTTCAAAAGTCATGGTGCCACTGTTGAGAGGAGCAATTTACTTTCCAAAAGT
1 GGAGCAATTTACTTTTCCAAAGTCGT-GTGCCTCTATTTAGAGGAGCAATTTACTTTTC-AAAGT
*
305491 CATGGTGCCTCTGTTTAGA
64 CGTGGTGCCTCTGTTTAGA
305510 GGAGCAATTTACTTTTCCAAAGTTCCGT-TGCCTCTATTTAGAGGAGCAATTTACTTTTTCAAAG
1 GGAGCAATTTACTTTTCCAAAG-T-CGTGTGCCTCTATTTAGAGGAGCAATTTAC-TTTTCAAAG
305574 TCGTGGTGCCTCTGTTTAGA
63 TCGTGGTGCCTCTGTTTAGA
* * * *
305594 GGAGCAATTTA-TTTT-CAAAGTCGTGGTGCCTCTATTTAGAAGAGCAATTTACATTCCAAAGCC
1 GGAGCAATTTACTTTTCCAAAGTCGT-GTGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAGTC
305657 GTGGTGCCTCTGTTTAGA
65 GTGGTGCCTCTGTTTAGA
*
305675 GGAGCAATTTACCTTTCCAAAGTTTCGT-TGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAGT
1 GGAGCAATTTACTTTTCCAAAG--TCGTGTGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAGT
305739 CGTGGTGCCTCTGTTTAGA
64 CGTGGTGCCTCTGTTTAGA
* * *
305758 GGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATGTTTCTCAAAG
1 GGAGCAATTTACTTTTCCAAAGTCGT-GTGCCTCTATTTAGAGGAGCAATTTA-CTTT-TCAAAG
* *
305823 TCGTTGAGCCTCTGTTTAGA
63 TCGTGGTGCCTCTGTTTAGA
305843 GGAGC
1 GGAGC
305848 TTCGGTAAAA
Statistics
Matches: 303, Mismatches: 22, Indels: 25
0.87 0.06 0.07
Matches are distributed among these distances:
80 3 0.01
81 42 0.14
82 33 0.11
83 104 0.34
84 81 0.27
85 38 0.13
86 2 0.01
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (82 bp):
GGAGCAATTTACTTTTCCAAAGTCGTGTGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAGTCG
TGGTGCCTCTGTTTAGA
Found at i:305860 original size:1 final size:1
Alignment explanation
Indices: 305854--305948 Score: 91
Period size: 1 Copynumber: 95.0 Consensus size: 1
305844 GAGCTTCGGT
* * * * * * **
305854 AAAAAAAAAAACAAAAAAATAAAAAAACAAAAAAATAAAAAACAAAAAAAACAAAACCAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
305919 AAACAAAAAAATAAAAAAACAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
305949 GACAATGTTG
Statistics
Matches: 74, Mismatches: 20, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 74 1.00
ACGTcount: A:0.88, C:0.08, G:0.00, T:0.03
Consensus pattern (1 bp):
A
Found at i:305879 original size:16 final size:15
Alignment explanation
Indices: 305854--305948 Score: 117
Period size: 16 Copynumber: 6.5 Consensus size: 15
305844 GAGCTTCGGT
305854 AAAAAAAAAAACAAA
1 AAAAAAAAAAACAAA
305869 AAAATAAAAAAACAAA
1 AAAA-AAAAAAACAAA
*
305885 AAAATAAAAAAC-AA
1 AAAAAAAAAAACAAA
*
305899 AAAAAACAAAAC---
1 AAAAAAAAAAACAAA
*
305911 CAAAAAAAAAACAAA
1 AAAAAAAAAAACAAA
305926 AAAATAAAAAAACAAA
1 AAAA-AAAAAAACAAA
305942 AAAAAAA
1 AAAAAAA
305949 GACAATGTTG
Statistics
Matches: 69, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
12 10 0.14
14 12 0.17
15 17 0.25
16 30 0.43
ACGTcount: A:0.88, C:0.08, G:0.00, T:0.03
Consensus pattern (15 bp):
AAAAAAAAAAACAAA
Found at i:305919 original size:41 final size:41
Alignment explanation
Indices: 305857--305946 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 41
305847 CTTCGGTAAA
305857 AAAAAAAACAAAAAAATAAAAAAACAAAAAAAT-AAAAAAC
1 AAAAAAAACAAAAAAATAAAAAAACAAAAAAATAAAAAAAC
305897 AAAAAAAACAAAACCAAA-AAAAAAACAAAAAAATAAAAAAAC
1 AAAAAAAACAAAA--AAATAAAAAAACAAAAAAATAAAAAAAC
305939 AAAAAAAA
1 AAAAAAAA
305947 AAGACAATGT
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
40 13 0.28
41 16 0.34
42 18 0.38
ACGTcount: A:0.88, C:0.09, G:0.00, T:0.03
Consensus pattern (41 bp):
AAAAAAAACAAAAAAATAAAAAAACAAAAAAATAAAAAAAC
Found at i:306122 original size:58 final size:58
Alignment explanation
Indices: 306032--306148 Score: 189
Period size: 58 Copynumber: 2.0 Consensus size: 58
306022 GAGGGGCAGC
* *
306032 TGTAGACACCTAATTTGGTCCAGGCCCGGATCAATTGGGCCTGGCCCAAATAGGTAGG
1 TGTAGACACCCAATTTGATCCAGGCCCGGATCAATTGGGCCTGGCCCAAATAGGTAGG
* * *
306090 TGTAGACACCCAATTTGATCCAGGCCCGGATCAATTGGGCTTGGTCCAAATGGGTAGG
1 TGTAGACACCCAATTTGATCCAGGCCCGGATCAATTGGGCCTGGCCCAAATAGGTAGG
306148 T
1 T
306149 TCAATTTTAT
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (58 bp):
TGTAGACACCCAATTTGATCCAGGCCCGGATCAATTGGGCCTGGCCCAAATAGGTAGG
Found at i:306184 original size:11 final size:11
Alignment explanation
Indices: 306168--306298 Score: 54
Period size: 12 Copynumber: 11.3 Consensus size: 11
306158 TCTTTGTCAT
306168 TTTTATTTTTA
1 TTTTATTTTTA
306179 TTTTA-TTTTA
1 TTTTATTTTTA
306189 TTTTATATTTTA
1 TTTTAT-TTTTA
* *
306201 TGTATATCCTATGTA
1 T-TTTAT--T-TTTA
306216 TTTTATTATTTA
1 TTTTATT-TTTA
* *
306228 -TGTATTATTA
1 TTTTATTTTTA
** * *
306238 CTAATATATATA
1 -TTTTATTTTTA
*
306250 TATTTATTATT-
1 T-TTTATTTTTA
306261 TTTTATCTTTTA
1 TTTTAT-TTTTA
306273 TTTTATTTATT-
1 TTTTATTT-TTA
306284 TTTGTATTTTTA
1 TTT-TATTTTTA
306296 TTT
1 TTT
306299 ATCTAATTAT
Statistics
Matches: 89, Mismatches: 18, Indels: 25
0.67 0.14 0.19
Matches are distributed among these distances:
10 18 0.20
11 22 0.25
12 36 0.40
13 4 0.04
14 5 0.06
15 4 0.04
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.69
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:306197 original size:17 final size:16
Alignment explanation
Indices: 306168--306201 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
306158 TCTTTGTCAT
306168 TTTTATTTTTATTTTA
1 TTTTATTTTTATTTTA
306184 TTTTATTTTATATTTTA
1 TTTTATTTT-TATTTTA
306201 T
1 T
306202 GTATATCCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTTATTTTTATTTTA
Found at i:306293 original size:22 final size:21
Alignment explanation
Indices: 306167--306298 Score: 70
Period size: 23 Copynumber: 5.7 Consensus size: 21
306157 ATCTTTGTCA
306167 TTTTTATTTTTATTTTATT-T
1 TTTTTATTTTTATTTTATTAT
*
306187 TATTTTATATTTTATGTATATCCTAT
1 T-TTTTAT-TTTTAT-TTTAT--TAT
306213 GTATTTTATTATTTATGTATTATTA-
1 -T-TTTTATT-TTTAT-T-TTATTAT
* ** * *
306238 CTAATATATATATATTTATTAT
1 TTTTTATTTTTAT-TTTATTAT
306260 TTTTTATCTTTTATTTTATTTAT
1 TTTTTAT-TTTTATTTTA-TTAT
306283 TTTTGTATTTTTATTT
1 TTTT-TATTTTTATTT
306299 ATCTAATTAT
Statistics
Matches: 86, Mismatches: 13, Indels: 23
0.70 0.11 0.19
Matches are distributed among these distances:
20 1 0.01
21 12 0.14
22 19 0.22
23 28 0.33
24 3 0.03
25 1 0.01
26 4 0.05
27 15 0.17
28 3 0.03
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.70
Consensus pattern (21 bp):
TTTTTATTTTTATTTTATTAT
Done.