Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14313602
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 50000 characters in sequence are not A, C, G, or T
File 30 of 74
Found at i:6629272 original size:35 final size:35
Alignment explanation
Indices: 6629211--6629280 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 35
6629201 GCACCCAATG
* * *
6629211 AAATTTAAGCCCAATTTAACTGGCACTCGATGAAA
1 AAATTTAAACCCAATTTAACTAGCACTCAATGAAA
*
6629246 AAATTTAAACCCAGA-TTACCTAGCACTCAATGAAA
1 AAATTTAAACCCA-ATTTAACTAGCACTCAATGAAA
6629281 TTTTAAGTCT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 29 0.97
36 1 0.03
ACGTcount: A:0.43, C:0.21, G:0.11, T:0.24
Consensus pattern (35 bp):
AAATTTAAACCCAATTTAACTAGCACTCAATGAAA
Found at i:6629383 original size:34 final size:32
Alignment explanation
Indices: 6629339--6629459 Score: 95
Period size: 34 Copynumber: 3.7 Consensus size: 32
6629329 TCTGGCTTCT
*
6629339 AATG-AAATTTAAGCCTAGTTTAGCTAGCACTC
1 AATGAAAATTTAAGCCTA-TTTACCTAGCACTC
*
6629371 AATGAAAAATTTAAAGCC-ATATTACCTCGCACTC
1 AATG-AAAATTT-AAGCCTAT-TTACCTAGCACTC
* * * * * *
6629405 AATGAAATTTTAGGCCTAAATTATCTAGCGCCC
1 AATGAAAATTTAAGCCT-ATTTACCTAGCACTC
6629438 AATG-AAATTTAAGCCTGATTTA
1 AATGAAAATTTAAGCCT-ATTTA
6629460 GTTAGCTCTT
Statistics
Matches: 70, Mismatches: 13, Indels: 12
0.74 0.14 0.13
Matches are distributed among these distances:
32 22 0.31
33 20 0.29
34 23 0.33
35 5 0.07
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (32 bp):
AATGAAAATTTAAGCCTATTTACCTAGCACTC
Found at i:6629428 original size:131 final size:132
Alignment explanation
Indices: 6629192--6629449 Score: 365
Period size: 131 Copynumber: 2.0 Consensus size: 132
6629182 TTTAAGCCTA
* *
6629192 GATTATCTGGCACCCAATGAAATTTAAGCCCAATTTAACTGGCACTCGATGAAAAAATTTAAACC
1 GATTATCTGGCACCCAATGAAATTTAAGCCCAATTTAACTAGCACTCAATGAAAAAATTTAAACC
* *
6629257 CAGATTACCTAGCACTCAATGAAATTTTAAGTCTAAATTATCTGGCACCAAATGAAATTTAAAAT
66 CAGATTACCTAGCACTCAATGAAATTTTAAGCCTAAATTATCTAGCACCAAATGAAATTTAAAAT
6629322 TG
131 TG
** * * * * *
6629324 GATTATCTGGCTTCTAATGAAATTTAAGCCTAGTTTAGCTAGCACTCAATG-AAAAATTTAAAGC
1 GATTATCTGGCACCCAATGAAATTTAAGCCCAATTTAACTAGCACTCAATGAAAAAATTTAAACC
* * * * *
6629388 CATATTACCTCGCACTCAATGAAATTTTAGGCCTAAATTATCTAGCGCCCAATGAAATTTAA
66 CAGATTACCTAGCACTCAATGAAATTTTAAGCCTAAATTATCTAGCACCAAATGAAATTTAA
6629450 GCCTGATTTA
Statistics
Matches: 110, Mismatches: 16, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
131 67 0.61
132 43 0.39
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (132 bp):
GATTATCTGGCACCCAATGAAATTTAAGCCCAATTTAACTAGCACTCAATGAAAAAATTTAAACC
CAGATTACCTAGCACTCAATGAAATTTTAAGCCTAAATTATCTAGCACCAAATGAAATTTAAAAT
TG
Found at i:6629507 original size:131 final size:131
Alignment explanation
Indices: 6629233--6629508 Score: 317
Period size: 131 Copynumber: 2.1 Consensus size: 131
6629223 AATTTAACTG
* *
6629233 GCACTCGATGAAAAAATTTAAACCCAGATTACCTAGCACTCAATGAAATTTTAAGTCTAAATTAT
1 GCACTCAATG-AAAAATTTAAACCCAGATTACCTAGCACTCAATGAAATTTTAAGCCTAAATTAT
* * * * * *
6629298 CTGGCACCAAATGAAATTTAAAATTGGATTATCTGGCTTCTAATGAAATTTAAGCCTAGTTTAGC
65 CTAGCACCAAATGAAATTTAAAACTGGATTATCTAGCTTCTAATGAAATATAAACCTAGCTTAGC
6629363 TA
130 TA
* * * *
6629365 GCACTCAATGAAAAATTTAAAGCCATATTACCTCGCACTCAATGAAATTTTAGGCCTAAATTATC
1 GCACTCAATGAAAAATTTAAACCCAGATTACCTAGCACTCAATGAAATTTTAAGCCTAAATTATC
* * ** *
6629430 TAGCGCCCAATGAAATTTAAGCCT-GATTTAGT-TAGC-TCTTGATGAAATGATAAACCTAGCTT
66 TAGCACCAAATGAAATTTAAAACTGGA-TTA-TCTAGCTTC-TAATGAAAT-ATAAACCTAGCTT
6629492 AGCTA
127 AGCTA
*
6629497 GCAC-CTATGAAA
1 GCACTCAATGAAA
6629509 TTTTAAGCCC
Statistics
Matches: 122, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
130 4 0.03
131 89 0.73
132 29 0.24
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.30
Consensus pattern (131 bp):
GCACTCAATGAAAAATTTAAACCCAGATTACCTAGCACTCAATGAAATTTTAAGCCTAAATTATC
TAGCACCAAATGAAATTTAAAACTGGATTATCTAGCTTCTAATGAAATATAAACCTAGCTTAGCT
A
Found at i:6629595 original size:32 final size:31
Alignment explanation
Indices: 6629550--6629626 Score: 84
Period size: 31 Copynumber: 2.4 Consensus size: 31
6629540 GTTGGCCACT
*
6629550 CAATGAAAATTTAAGCTCAACT-TAGCTGATATC
1 CAAT-AAAATTTAAG-TCAACTGTAGCTGACA-C
* * *
6629583 CAATAAAATTTAAGTCTAGTGTAGTTGACAC
1 CAATAAAATTTAAGTCAACTGTAGCTGACAC
6629614 CAATAAAATTTAA
1 CAATAAAATTTAA
6629627 ACCTAGTTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
31 18 0.46
32 17 0.44
33 4 0.10
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.31
Consensus pattern (31 bp):
CAATAAAATTTAAGTCAACTGTAGCTGACAC
Found at i:6629855 original size:14 final size:13
Alignment explanation
Indices: 6629815--6629858 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
6629805 CATCTTAAGA
*
6629815 AAAAAATAAAAAC
1 AAAAAATAAAACC
*
6629828 AAAAAAAAATAACC
1 AAAAAATAA-AACC
6629842 AAAAAATAACAACC
1 AAAAAATAA-AACC
6629856 AAA
1 AAA
6629859 CCAAAAAAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
13 8 0.31
14 18 0.69
ACGTcount: A:0.80, C:0.14, G:0.00, T:0.07
Consensus pattern (13 bp):
AAAAAATAAAACC
Found at i:6630248 original size:20 final size:20
Alignment explanation
Indices: 6630215--6630252 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
6630205 ACATATATAA
*
6630215 AAATAATAATAATAAAAAGT
1 AAATAATAAAAATAAAAAGT
*
6630235 AAATATTAAAAATAAAAA
1 AAATAATAAAAATAAAAA
6630253 ATACGTATGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (20 bp):
AAATAATAAAAATAAAAAGT
Found at i:6630299 original size:12 final size:13
Alignment explanation
Indices: 6630278--6630336 Score: 59
Period size: 12 Copynumber: 4.6 Consensus size: 13
6630268 ATATAAAGAA
*
6630278 ATATTTAAAACAT
1 ATATATAAAACAT
6630291 ATATA-AAAACAT
1 ATATATAAAACAT
6630303 ATATATAAAA-AT
1 ATATATAAAACAT
* * *
6630315 AAAAATAAAATAAT
1 ATATATAAAA-CAT
6630329 ATATATAA
1 ATATATAA
6630337 TAAAAAGTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
12 22 0.58
13 8 0.21
14 8 0.21
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (13 bp):
ATATATAAAACAT
Found at i:6630336 original size:14 final size:14
Alignment explanation
Indices: 6630289--6630336 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
6630279 TATTTAAAAC
6630289 ATATATAAAA-ACAT
1 ATATATAAAATA-AT
6630303 ATATATAAAAATAA-
1 ATATAT-AAAATAAT
6630317 A-A-ATAAAATAAT
1 ATATATAAAATAAT
6630329 ATATATAA
1 ATATATAA
6630337 TAAAAAGTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
11 7 0.24
12 3 0.10
13 2 0.07
14 11 0.38
15 5 0.17
16 1 0.03
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (14 bp):
ATATATAAAATAAT
Found at i:6631874 original size:3 final size:3
Alignment explanation
Indices: 6631868--6631892 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
6631858 AATAATAATA
6631868 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
6631893 TCCACCTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:6632337 original size:7 final size:7
Alignment explanation
Indices: 6632327--6632351 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
6632317 ATTTTTTAAA
6632327 AAATAAT
1 AAATAAT
6632334 AAATAAT
1 AAATAAT
6632341 AAATAAT
1 AAATAAT
6632348 AAAT
1 AAAT
6632352 TAAGATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
AAATAAT
Found at i:6634362 original size:24 final size:24
Alignment explanation
Indices: 6634312--6634391 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 24
6634302 TAATATGATT
* *
6634312 TTTTAAAAA-TTG-GAAATTAAAA
1 TTTTAAAAATTTGAAAAAATAAAA
6634334 CTTTTAAAAATTTGAAAAAATAAAA
1 -TTTTAAAAATTTGAAAAAATAAAA
* *
6634359 TTTTCAAAACTTTTTTAAAAAATTAAAA
1 TTTT-AAAA--ATTTGAAAAAA-TAAAA
6634387 TTTTA
1 TTTTA
6634392 TTTAAAAATA
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
23 9 0.19
24 7 0.15
25 12 0.26
27 10 0.21
28 9 0.19
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.40
Consensus pattern (24 bp):
TTTTAAAAATTTGAAAAAATAAAA
Found at i:6634994 original size:27 final size:28
Alignment explanation
Indices: 6634938--6634994 Score: 64
Period size: 28 Copynumber: 2.1 Consensus size: 28
6634928 ATATTTAAGA
* *
6634938 AATTTTATTTCATTAAAAATTTTCATAT
1 AATTTTATTTCATTAAAAATATTCAAAT
*
6634966 AATTTTATTT-TTTAAAAAATATT-AAAT
1 AATTTTATTTCATT-AAAAATATTCAAAT
6634993 AA
1 AA
6634995 AGAATAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
27 7 0.28
28 18 0.72
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.51
Consensus pattern (28 bp):
AATTTTATTTCATTAAAAATATTCAAAT
Found at i:6637049 original size:28 final size:28
Alignment explanation
Indices: 6637018--6637072 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 28
6637008 AAAAATCTGA
6637018 AAAAAAATTTGAAAAAAATAAAAATTTC
1 AAAAAAATTTGAAAAAAATAAAAATTTC
*** * *
6637046 AAAACTTTTTTAAAAAAATTAAAATTT
1 AAAAAAATTTGAAAAAAATAAAAATTT
6637073 ATTTAAAAAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.33
Consensus pattern (28 bp):
AAAAAAATTTGAAAAAAATAAAAATTTC
Found at i:6637059 original size:20 final size:19
Alignment explanation
Indices: 6637036--6637082 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
6637026 TTGAAAAAAA
6637036 TAAAAATTTCAAAACTTT-TT
1 TAAAAATTT-AAAA-TTTATT
*
6637056 TAAAAAAATTAAAATTTATT
1 T-AAAAATTTAAAATTTATT
6637076 TAAAAAT
1 TAAAAAT
6637083 AAACTAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
19 8 0.35
20 8 0.35
21 7 0.30
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.40
Consensus pattern (19 bp):
TAAAAATTTAAAATTTATT
Found at i:6641166 original size:181 final size:177
Alignment explanation
Indices: 6640830--6642613 Score: 1176
Period size: 181 Copynumber: 9.9 Consensus size: 177
6640820 AAATATATTT
* * *
6640830 ATTTTTAAATT-T-TTACTTATTAATTTTTGAAATATTAATAAA-TATTTATTATTTTATTTGAA
1 ATTTTTTAATTCTCTTACTTATTAATTTTT-AAATATTAATAAATTA-GTATTATTTTATTTCAA
** * * * * * * *
6640892 ATAAGCTTGCATGAA-TAGAACCAAA-TGTTTTATGAGAAAAAAAAATGTCATACTGTTTTAAAA
64 ATAAGCTTATATGAACTA-AA--AAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAA
* * *
6640955 TAGATAATTGTTTAAATGGTCATAACTATTTGAACATGTTTGGTAACAAGATTC
126 TAGATAATTGTTCAAATAGTCATAATTATTTGAAC-TGTTTGGTAA-AAGATTC
* * **
6641009 ATTTTTTAATTCTCTTTCTCATTAATTTATGGAATATTAATAAATTAGTATTATTTTATTTCAAA
1 ATTTTTTAATTCTCTTACTTATTAATTT-TTAAATATTAATAAATTAGTATTATTTTATTTCAAA
* * *
6641074 TAAGCTTATATGAACTTAAAAAATTATTTTATTACAAAACAAAAGGTCACAATGATTTGAAATAA
65 TAAGCTTATATGAAC-TAAAAAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAG
* * * * *
6641139 ACAATTATTCAAATAGTCATTACTATTTGAACGTGTTCGGTAACAAGATTC
129 ATAATTGTTCAAATAGTCATAATTATTTGAAC-TGTTTGGTAA-AAGATTC
*** * * *
6641190 CCATTTTAATTCTCTTTCTCATAAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTCAAA
1 ATTTTTTAATTCTCTTACTTATTAATTTTTA-AATATTAATAAATTAGTATTATTTTATTTCAAA
* * * * * *
6641255 TAAGCTTATATGAACTGAAACAATTGTTTTATTATAAAACAAAAGGTCACAATGATTTGAAACAG
65 TAAGCTTATATGAACT-AAAAAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAG
* * * * * *
6641320 ATAATTATTCAAATAGTTC-TTATTAGTTGAACTTGTTTGGAAAACATATTT
129 ATAATTGTTCAAATAG-TCATAATTATTTGAAC-TGTTTGGTAAA-AGATTC
** * *
6641371 ATTTTTTAAATGT-TC-TACTTATTAATTGTCAAAATATTAATAAATTAATATT-TTGTTA-ATC
1 ATTTTTT-AAT-TCTCTTACTTATTAATT-TTTAAATATTAATAAATTAGTATTATT-TTATTTC
* * * * ***
6641432 GGAATAAGCATGTATG-AC-AGAAATAATTATTTTATGACAAAACAAAAAGTCATACCAATTTGA
62 -AAATAAGCTTATATGAACTA-AAA-AATTATTTTATGACAAAACAAAAGGTCATAATGATTTGA
* * * ** * **
6641495 AAAAAATAATTTTTCAAATAGTCATAAAGATTTGAAATTGTTCAGTAAATAGAATT-
124 AATAGATAATTGTTCAAATAGTCATAATTATTTG-AACTGTTTGGTAAA-AG-ATTC
* *
6641551 ATTTTTAAAATT-TTTTACTTATTAATTGTCTT-AATATTAATAAATTTA-TATTATTTTA-TTC
1 ATTTTT-TAATTCTCTTACTTATTAATT-T-TTAAATATTAATAAA-TTAGTATTATTTTATTTC
* * * * * ** * * * *
6641612 AAAATAAGCTTGTCTGCACAATAAAAATCATTTTATGACAAAATGAATGGTTATAGTGATTTCAA
62 -AAATAAGCTTATATGAACTA-AAAAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAA
* * *
6641677 ATAGATAATTG-TCGAAATAGT-AAAATTATTTAAACTTGTTTGGT--GA-ATTC
125 ATAGATAATTGTTC-AAATAGTCATAATTATTTGAAC-TGTTTGGTAAAAGATTC
* * * *
6641727 ATTTTTTAAATCTCTTAATTATTAATTTTCATAATATTAATAACTTAGTATTATTTTATTTCAAA
1 ATTTTTTAATTCTCTTACTTATTAATTTTTA-AATATTAATAAATTAGTATTATTTTATTTCAAA
* * * *
6641792 TAAGCTTATATGAATTGAAATAATTTTTTTATGACAAAACAAAATGTTC-TAATGATTTGAAATA
65 TAAGCTTATATGAACT-AAAAAATTATTTTATGACAAAACAAAA-GGTCATAATGATTTGAAATA
* * * * * * *
6641856 GATAATTATTCAAATAGTCATGATTATTTGATCTAGTTCGATAAACATATTT
128 GATAATTGTTCAAATAGTCATAATTATTTGAACT-GTTTGGTAAA-AGATTC
* * * * * ** ***
6641908 ACTTTTTAAAGT-TGTTGCTTATCAATTGTCAAAATATTAATAAATTAGTATTATTTTAACCCAA
1 A-TTTTTTAATTCTCTTACTTATTAATT-TTTAAATATTAATAAATTAGTATTATTTTATTTCAA
* * * * **
6641972 ATAAGCTTATATGAA-TAGAAACAATTGTTTTATGATAGAACAAAAAGTCATAACAATTTGAAAT
64 ATAAGCTTATATGAACTA-AAA-AATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAAT
* * * * * *
6642036 AAATAATTGCTCAAATAGTCAAAACTATTTGAACTTGTTTGATAAATAGATTT
127 AGATAATTGTTCAAATAGTCATAATTATTTGAAC-TGTTTGGTAAA-AGATTC
* * * * *
6642089 ATTTTTCAA--ATC-T-CTTATTAATTTTTGAAATATTAATAGATTAGTATTACTTTATTCCAAA
1 ATTTTTTAATTCTCTTACTTATTAATTTTT-AAATATTAATAAATTAGTATTATTTTATTTCAAA
* * * ** * * * * * *
6642150 CAAACTTGTACAAAC-AAAAACATTTGTTTTATAACAAAACAAAATGCCATAACGATTTGTAATA
65 TAAGCTTATATGAACTAAAAA-A-TTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATA
* * * *
6642214 GATAATTGTTCAAATAATCATAATTATTTGAACTGGTTGGT-AAATA-TA
128 GATAATTGTTCAAATAGTCATAATTATTTGAACTGTTTGGTAAAAGATTC
* * *
6642262 ACTATTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTCA-TTTTATTTTATTCC
1 A-T-TTTTTAATTCTCTTACTTATTAATTTTT-AAATATTAATAAATT-AGTATTATTTTATTTC
* * *
6642326 AAATAAGC-TAGTATGAATTCAAAAAAACTTATTTTATGACAAAACAAAATGTCATAATGATTTC
62 AAATAAGCTTA-TATGAA--CTAAAAAA-TTATTTTATGACAAAACAAAAGGTCATAATGATTTG
* * * * * * *
6642390 AAATAGATATTTGTTCATATAGTCTTTAAATATTTGAACTAGTTCGGCAAACAAATGT-
123 AAATAGATAATTGTTCAAATAGTC-ATAATTATTTGAACT-GTTTGGTAAA-AGAT-TC
* * * ** * **
6642448 ATTTTGTAATTCTCTTAGTTATTAATTTTTTGAATATTTTTAGATTAGTATTATTTTATTTTGAA
1 ATTTTTTAATTCTCTTACTTATTAA-TTTTTAAATATTAATAAATTAGTATTATTTTATTTCAAA
* * * * * * * * * * * **
6642513 TAAACTTGTTTGAACAAAAATAATTATTTTATAATAGAACAAAAGGTTATAACGATTTCAAGTTT
65 TAAGCTTATATGAACTAAAA-AATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAG
* * *
6642578 ACAATTTTTCAAATAATCAT-A-TATTTGAACTAGTTT
129 ATAATTGTTCAAATAGTCATAATTATTTGAACT-GTTT
6642614 ACAATTTTTC
Statistics
Matches: 1270, Mismatches: 258, Indels: 154
0.76 0.15 0.09
Matches are distributed among these distances:
173 2 0.00
174 4 0.00
175 19 0.01
176 113 0.09
177 137 0.11
178 4 0.00
179 83 0.07
180 163 0.13
181 570 0.45
182 99 0.08
183 10 0.01
184 55 0.04
185 9 0.01
186 1 0.00
187 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.42
Consensus pattern (177 bp):
ATTTTTTAATTCTCTTACTTATTAATTTTTAAATATTAATAAATTAGTATTATTTTATTTCAAAT
AAGCTTATATGAACTAAAAAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGAT
AATTGTTCAAATAGTCATAATTATTTGAACTGTTTGGTAAAAGATTC
Found at i:6642620 original size:36 final size:36
Alignment explanation
Indices: 6642573--6642648 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
6642563 AACGATTTCA
6642573 AGTTTACAATTTTTCAAATAATCATATATTTGAACT
1 AGTTTACAATTTTTCAAATAATCATATATTTGAACT
*
6642609 AGTTTACAATTTTTCGAATAATCATATATTTGAACT
1 AGTTTACAATTTTTCAAATAATCATATATTTGAACT
6642645 AGTT
1 AGTT
6642649 CATCAAACAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.37, C:0.11, G:0.08, T:0.45
Consensus pattern (36 bp):
AGTTTACAATTTTTCAAATAATCATATATTTGAACT
Found at i:6643350 original size:181 final size:181
Alignment explanation
Indices: 6643008--6646992 Score: 2282
Period size: 181 Copynumber: 22.3 Consensus size: 181
6642998 GTAAACAAAA
* *** *
6643008 TTATTTTTTAAATATCACACTTATTAATTTTTGAAATATTAATAAATT-GATATTATTTTATTTT
1 TTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAG-TATTATTTTATTTC
* * * * * * *
6643072 GAATAGGCTTATATG-A-TGAAAAATAATTGTTTTATGACAAAACAAAAGTTCGTAATAATTTGA
65 GAATAAGCTTGTATGAACTG--AAACAATTATTTTATGATAAAACAAAAGGTCATAATAATTTGA
* * * * *
6643135 AATAGATAATTATTCAAAT-GACCATAATTATTTGAACCGATTTGATAAACTGAC
128 AATAGATAATTGTTCAAATAGATCATAACTATTTGAACTG-TTTGATAAACTGAT
* * * * * *
6643189 TTATTTTTTAAATCTTTAACTTATTAGTTTTTGAAAAATTAATAAAATAATATTATTTTATTTCA
1 TTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCG
** * ** * * *
6643254 AATAAATTTTTATGAACTGAGTCAATTATTTTATGATAAAACAAAATGTCATATTTATTCT-AAA
66 AATAAGCTTGTATGAACTGAAACAATTATTTTATGATAAAACAAAAGGTCATAATAATT-TGAAA
* * ** **
6643318 TAAATAATTGTTCAAATAGAT-ATGACTATTTGAACTTGTTCCATAAACAAAT
130 TAGATAATTGTTCAAATAGATCATAACTATTTGAAC-TGTTTGATAAACTGAT
* * *
6643370 TTATTTTTTTAAAT-TTCTTATTTATTAATTTTTTG-AATGTTAATAAATTAATATTATTTTATT
1 TTA-TTTTTTAAATCTT-TTACTTATTAA-TTTTTGAAATATTAATAAATTAGTATTATTTTATT
* * * * *
6643433 TCGAATAAGCATGTATGAACTAAAACAATTATTTTATGACT-AAACAAAAGGTAAGAACAATTTG
63 TCGAATAAGCTTGTATGAACTGAAACAATTATTTTATGA-TAAAACAAAAGGTCATAATAATTTG
* * * * * * **
6643497 AAATAGATAATTATTCTAATA-ATCTTAACTATTTGAATTGGTTCAGTAAACACAT
127 AAATAGATAATTGTTCAAATAGATCATAACTATTTGAACTGTTTGA-TAAACTGAT
* * * * *
6643552 TTATTTTTTAAATCTCTTT-CTTATT--TTTTT-AGAATATTATTAATTTAGCAATATTTTA-CT
1 TTATTTTTTAAATCT-TTTACTTATTAATTTTTGA-AATATTAATAAATTAGTATTATTTTATTT
* ** * * * **
6643612 CTGAATAAGCTTGTATGAACAGAAGTAATTGTTTTATTACAAAAC-AAAGAACAT-ATCAATTTG
64 C-GAATAAGCTTGTATGAACTGAAACAATTATTTTATGATAAAACAAAAGGTCATAAT-AATTTG
* * * *
6643675 AGATAGATAATTGTTCAAATA-ATCATAAGTATTTGAACTGATTCGATAAACAGAT
127 AAATAGATAATTGTTCAAATAGATCATAACTATTTGAACTG-TTTGATAAACTGAT
* * * *
6643730 TTAATTTTTAAATC---T-CTCATTAA-TTTTCAAGATATTAATAAATTAGTATTATTTTATTTT
1 TTATTTTTTAAATCTTTTACTTATTAATTTTTGAA-ATATTAATAAATTAGTATTATTTTATTTC
** * ** * *
6643790 GAATAATTTTGTATGAA-TAGAAACAATCATTTTACAATAAAACAAAATGTCATAATGATTTGAA
65 GAATAAGCTTGTATGAACT-GAAACAATTATTTTATGATAAAACAAAAGGTCATAATAATTTGAA
** * * * * *
6643854 ATAGATAATAATTCAAATGGAT-ATGACAATTTGAACT-TGTTCAGTAAAAAT-AT
129 ATAGATAATTGTTCAAATAGATCATAACTATTTGAACTGT-TTGA-T-AAACTGAT
*** * *
6643907 TTATTTTTTAAATCTCCAACCTATTAATTTTT-AGAATATTATTAAATTAGTATTATTTTATTT-
1 TTATTTTTTAAATCTTTTACTTATTAATTTTTGA-AATATTAATAAATTAGTATTATTTTATTTC
** * * * ** * *
6643970 GAAATAAAATTGTATGAA-TATAAACAATTATTTTATGACAAAATAAAATATCAAAATGATTTGA
65 G-AATAAGCTTGTATGAACT-GAAACAATTATTTTATGATAAAACAAAAGGTCATAATAATTTGA
* ** * * * * *
6644034 AATAAATAATTGTTTTAA-GGGTCATAACTATTTGAACTCGCTCGGTAAA-TAGAT
128 AATAGATAATTGTTCAAATAGATCATAACTATTTGAACT-GTTTGATAAACT-GAT
* * * * *
6644088 TTATTTTCTAAATCTTTTACTTATTAATTTTTGGAATTTTAATAAATTAGTATTATTGTATTTTG
1 TTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCG
* ** * * *
6644153 AATAAGCTTTTATGAA-TAGAAACAATTGGTTTATGACAAAACAAAAGGTCATAACAATTTCAAA
66 AATAAGCTTGTATGAACT-GAAACAATTATTTTATGATAAAACAAAAGGTCATAATAATTTGAAA
*
6644217 TAGAGAATTGTTCAAATAG-TCATAACTATTTG-ACTGTGTTTAGA-AAACAT-AT
130 TAGATAATTGTTCAAATAGATCATAACTATTTGAAC--TGTTT-GATAAAC-TGAT
* *
6644269 TTATTTTTTAAAT-TTTTACTTGTTAATTTTTGGAATATTAATAAATTTA-TATTATTTTA-TTC
1 TTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAA-TTAGTATTATTTTATTTC
* * * * * * *
6644331 AAAATAAGCTTGCATGAACAGAACCAATTGTTTTATGACAAAACAAAAGGTCATAATATTTTGAA
65 -GAATAAGCTTGTATGAACTGAAACAATTATTTTATGATAAAACAAAAGGTCATAATAATTTGAA
* * **
6644396 ATAGATAATTGTTCAGATAG-TCGTAACTATTTGAACATGTTCAATAAA-TAGAT
129 ATAGATAATTGTTCAAATAGATCATAACTATTTGAAC-TGTTTGATAAACT-GAT
* * * * * *
6644449 TAAATTTTTAATTCTCTTGCTCATTAATTTTT-AGAATATTAATAAATTAGTATTATTTTATTTC
1 TTATTTTTTAAATCTTTTACTTATTAATTTTTGA-AATATTAATAAATTAGTATTATTTTATTTC
* * * * * * *
6644513 AAATAAGCTTATGTGAACTGAAGCAATTGTTTTACT-ATAAAACAAAAGGTCACAATGATTTGAA
65 GAATAAGCTTGTATGAACTGAAACAATTATTTTA-TGATAAAACAAAAGGTCATAATAATTTGAA
* * * * **
6644577 ATAAATAATTATTCAAATA-CTCATGACTATTTGAACTTGTTCAATAAACAT-AT
129 ATAGATAATTGTTCAAATAGATCATAACTATTTGAAC-TGTTTGATAAAC-TGAT
** * * *
6644630 TTATTTTTTAAATCTTTTACTTATT-ATTTGTCAAAATATTAATAAATTAATAAT-TTTTAATTC
1 TTATTTTTTAAATCTTTTACTTATTAATTT-TTGAAATATTAATAAATTAGTATTATTTTATTTC
* *
6644693 GAATAAGCTTGTATGAA-TAGAAA-AATTATTTTATAATAAAACAAAAGCTCATAATAATTTGAA
65 GAATAAGCTTGTATGAACT-GAAACAATTATTTTATGATAAAACAAAAGGTCATAATAATTTGAA
* * * **
6644756 ATAAATAATTGTTCAAATAG-TCA-AA-TATTTGAACATGTTCGGTAAACAAAT
129 ATAGATAATTGTTCAAATAGATCATAACTATTTGAAC-TGTTTGATAAACTGAT
* * * *
6644807 TTATTTTTTAGATCTTTTACTTTTTAATTGTCTT--TATATTAATAAATTTGTATTATTTTA-TT
1 TTATTTTTTAAATCTTTTACTTATTAATT-T-TTGAAATATTAATAAATTAGTATTATTTTATTT
* * * * * * * *
6644869 CGAAATAAGCTTCTAT-AAATAGAAAAAAATCA-TTTATGACAAAACAAAAGGTTATAGTGATTT
64 CG-AATAAGCTTGTATGAACT-G-AAACAATTATTTTATGATAAAACAAAAGGTCATAATAATTT
* * * * * *
6644932 CAAATAGATAATTGTTCAAATAG-TCATAATTATTTAAACTTGTTCGTTAAACAGAT
126 GAAATAGATAATTGTTCAAATAGATCATAACTATTTGAAC-TGTTTGATAAACTGAT
* * ** * * * *
6644988 TTTTTTTTTAAATCTCTTGGTTATTAGTTTTT-AGAATAATGATAACTTAGTATTATTTTATTTC
1 TTATTTTTTAAATCTTTTACTTATTAATTTTTGA-AATATTAATAAATTAGTATTATTTTATTTC
* * * * * ** * **
6645052 GAATAAGTTTATATGAACTGAAATGATTTTTTTTACAACAAAAC-AAAGGTCATAACGATTTGAA
65 GAATAAGCTTGTATGAACTGAAA-CAATTATTTTATGATAAAACAAAAGGTCATAATAATTTGAA
* * * * *
6645116 ATAGATAATTATTCAAATAG-TCATAATTATTT-AATCTAGTTAGGTAAGCAT-AT
129 ATAGATAATTGTTCAAATAGATCATAACTATTTGAA-CT-GTTTGATAAAC-TGAT
* * *
6645169 TTATTTTTTAAAATTTTTTACTTATTAATTGTTGAAATATTAATAAATT-GATATTATTTTA-AT
1 TTATTTTTT-AAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAG-TATTATTTTATTT
* * ** * * * *** * *
6645232 CTAAATAAGTTTGTATGAACAAAAACTATTGTTTTATAACGGAACAAAAGGTCATAACAATTTGT
64 C-GAATAAGCTTGTATGAACTGAAACAATTATTTTATGATAAAACAAAAGGTCATAATAATTTGA
* * *
6645297 AATAAATAATTGCTCAAATA-ATCATAACTATTTAAACTGGTTTGATAAACATG-T
128 AATAGATAATTGTTCAAATAGATCATAACTATTTGAACT-GTTTGATAAAC-TGAT
* * *
6645351 TTATTTTTTAAATC--TT--TTATTAATTTTTGAAATATTAGTAGATTAGTATTCTTTTA-TTCT
1 TTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTC-
* * * * ** * * * * ** * *
6645411 AAACAAACTTATATGAACAAAAATATTTGTTTTATGACAAAACAAAATATCATAATGATTGGAAA
65 GAATAAGCTTGTATGAACTGAAACAATTATTTTATGATAAAACAAAAGGTCATAATAATTTG-AA
* * * * * * *
6645476 AAAAATAATTGTTCAGATAG-TTATAATTATTTGAACTGGTTGGATAAA-TAGAA
129 ATAGATAATTGTTCAAATAGATCATAACTATTTGAACT-GTTTGATAAACT-GAT
* * * * * * ** *
6645529 TTATTTTTTAAGTCTCTTGCTCATTAGTTTCTT-AATATGAATTATTTTATTTTA-TTTTATTTT
1 TTATTTTTTAAATCTTTTACTTATTAATTT-TTGAA-AT--ATTA--ATAAATTAGTATTATTTT
* * * * * * * * *
6645592 ATTCCAAATAAGCTAGCATGAATTGAAA-AAGTTGTTTTATGACAAGAC--AA----A-AATGAT
60 ATTTCGAATAAGCTTGTATGAACTGAAACAA-TTATTTTATGATAAAACAAAAGGTCATAATAAT
* * * * * * * **
6645649 TTGAAATAGATAA-CGATTTATATAG-TCTTAACTATTTAAACTAGTTAG-CAAACAAAT
124 TTGAAATAGATAATTG-TTCAAATAGATCATAACTATTTGAACT-GTTTGATAAACTGAT
* * * * *
6645706 TTATTTTTTAAATCTCTCAGTTATTAATTTTTTGAAATATT-TTATATTAGTATTATTTTATTTC
1 TTATTTTTTAAATCTTTTACTTATTAA-TTTTTGAAATATTAATAAATTAGTATTATTTTATTTC
* * * * * * *
6645770 AAATATGCTTGTATGAA-TAGAAATAATTGTTTTATGACAAAACAAAATGTTATAACT-ATTTGA
65 GAATAAGCTTGTATGAACT-GAAACAATTATTTTATGATAAAACAAAAGGTCATAA-TAATTTGA
* * * * * *
6645833 AGTATACAATTATTCAAATAG-TCATAACTATTTAAACTAGTTCGATAAA-TAGAT
128 AATAGATAATTGTTCAAATAGATCATAACTATTTGAACT-GTTTGATAAACT-GAT
* * * * *
6645887 TTATTTTTTAAATCTCTTA-TTATTAATTTTTGAGAGATTAATAAATTACTATT-TTTTATTTTG
1 TTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCG
* * * * * ** * * *
6645950 AATAAACTTTTAT-AA-TAAAAAACAATTGTTATATGACCAAACAAAAGCTAATAATGATTTGAA
66 AATAAGCTTGTATGAACT--GAAACAATTATTTTATGATAAAACAAAAGGTCATAATAATTTGAA
** * ** * * * *
6646013 ATAGATAATTAATGAAAT-GGCCATAATTATTTGAATTGATTTGGTAAAC-AAGT
129 ATAGATAATTGTTCAAATAGATCATAACTATTTGAACTG-TTTGATAAACTGA-T
* * * *
6646066 TTACTTTTTAAA----TTACTTATTAATTTTTGGAATACTAATAAATTAGTATTATTTTATTTTG
1 TTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCG
* * * * * * *
6646127 AATAAGCTTGTATGAATTGAATCAATTGTTTTATAACAAAACAAAAGGTCATAATGATTTTAAAT
66 AATAAGCTTGTATGAACTGAAACAATTATTTTATGATAAAACAAAAGGTCATAATAATTTGAAAT
* * * *
6646192 AGATAATTGTTCAAATAG-TCATAACTATTTGAATTTATTTGGTAAACTAAT
131 AGATAATTGTTCAAATAGATCATAACTATTTGAA-CTGTTTGATAAACTGAT
* * * * *
6646243 TTATTTTTTAAAACTCTTGCTTATTAATTTTTGAAATATTAAGAAATTAGTATTATTTTATTTTG
1 TTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCG
* * *
6646308 GATAAGCTTTTATGAACTGAAACAATTGTTTTAT-ATCAAAACAAAAGG---T-A-AA--T---A
66 AATAAGCTTGTATGAACTGAAACAATTATTTTATGAT-AAAACAAAAGGTCATAATAATTTGAAA
* * * *
6646362 -A-ATAATTGTTCAAATAG-TCATCATTATTTGAACT-TATTCAATAAACAGAT
130 TAGATAATTGTTCAAATAGATCATAACTATTTGAACTGT-TT-GATAAACTGAT
* * *
6646412 TTATTTTTTCAAAT-TTGTTCCTTATTAATTTTTTG-AATGTTAATAAATT--TAATTTTTTTAT
1 TTATTTTTT-AAATCTT-TTACTTATTAA-TTTTTGAAATATTAATAAATTAGT-ATTATTTTAT
* * * * * * * * * * **
6646473 TCCAAATAAGATTGTAAGATA-TGAAACAAATATTTTCT-A-ACTAACAAAAGATTAGAACGATT
62 TTCGAATAAGCTTGTATGA-ACTGAAACAATTATTTTATGATA-AAACAAAAGGTCATAATAATT
* * * * ** * * * **
6646535 TAAAATATATAATTATTCTAATAG-TTTTAACTATTTGAATTGGTTCGACAAACACAT
125 TGAAATAGATAATTGTTCAAATAGATCATAACTATTTGAACT-GTTTGATAAACTGAT
* * *
6646592 TTATTTTTTAGATC---T-CTTATTAATTTTTGAAATATTATTAAATTAGTATTATTTT-TAATC
1 TTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTAT-TTC
* * * * *
6646652 AAATAAGCTT-TATGATCAT-AAACAATTGTTTTATGACAAAACAAAAGGTCAT-ATCGATTTGA
65 GAATAAGCTTGTATGAAC-TGAAACAATTATTTTATGATAAAACAAAAGGTCATAAT-AATTTGA
* * * ** * * ** *
6646714 AATAGATAATTATTCATATAG-TC-TTACTATTCAAAATGGTT-AGGCAATTAGATT
128 AATAGATAATTGTTCAAATAGATCATAACTATTTGAACTGTTTGA-TAAACT-GA-T
* ** * * * *
6646768 TTATTTTTT-AATTTTCTTTGTTATTAAATGTTAAAATATTATTAAATTAGTATTATTTTATATT
1 TTATTTTTTAAATCTT-TTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTAT-TT
** * * * * * * * *
6646832 -GAATAAAATAGTATGAA-TAGAACCAATTATTTGATGACAAAATAAAAGGTTATAACAAATTGA
64 CGAATAAGCTTGTATGAACT-GAAACAATTATTTTATGATAAAACAAAAGGTCATAATAATTTGA
* * * * * ** *
6646895 AATAGATAATTATTCAAATAG-TC--AACTTTTTAAAATGGTTTGGTAAAAAGTT
128 AATAGATAATTGTTCAAATAGATCATAACTATTTGAACT-GTTTGATAAACTGAT
* * * * *
6646947 TTACTTTTTACATCTCTTACTGATTAATTTTTTAAATATTAATAAA
1 TTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAA
6646993 AGGTTAGAAT
Statistics
Matches: 3000, Mismatches: 602, Indels: 406
0.75 0.15 0.10
Matches are distributed among these distances:
167 2 0.00
168 12 0.00
169 82 0.03
170 27 0.01
171 7 0.00
172 9 0.00
173 48 0.02
174 19 0.01
175 66 0.02
176 152 0.05
177 350 0.12
178 214 0.07
179 333 0.11
180 358 0.12
181 943 0.31
182 306 0.10
183 19 0.01
184 2 0.00
185 5 0.00
186 39 0.01
187 7 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.43
Consensus pattern (181 bp):
TTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCG
AATAAGCTTGTATGAACTGAAACAATTATTTTATGATAAAACAAAAGGTCATAATAATTTGAAAT
AGATAATTGTTCAAATAGATCATAACTATTTGAACTGTTTGATAAACTGAT
Found at i:6645040 original size:539 final size:541
Alignment explanation
Indices: 6642635--6646992 Score: 2944
Period size: 542 Copynumber: 8.1 Consensus size: 541
6642625 AATAATCATA
* *
6642635 TATTTGAACTAGTTC-ATCAAACAAATTTATTTTTTAAATC---T-CTTATTAATTTTTGAAAGA
1 TATTTGAACT-GTTCGAT-AAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTG-AATA
* * *** **
6642695 TTAATAAATTAATATTATTTTATTTCG-AATAAGCTAGAATG-AT-GAAAAACAATTGTTATATG
63 TTAATAAATTAGTATTATTTTA-TTCGAAATAAACTTCTATGAATAGAAAAA-AATCATT-TATG
* * * * * * * * * *
6642757 ACCAAACAAAAGGCCAAAAT-TTTTGGTAAACATG-TAATTGTTCATATAATCTTAATTGTTTGA
125 ACAAAACAAAAGGTCATAATGATTT-G-AAATA-GATAATTGTTCAAATAGTCATAACTATTTGA
* * * * *
6642820 AC-TGTTTC-AGCAAATAGGTTTATTTTTTAAATCTTCTTG-TTATCAATTTTT-GAAATAATAT
187 ACTTG-TTCGA-TAAACAGATTTATTTTTTAAATC-TCTTGCTTATTAATTTTTAG-AATAATAA
* * * * * * *
6642881 TAAATTAGTATTATTTTATTCCAAATAAGCTTATATGAATTGAAATAATTATTTTATAATAGAAC
248 TAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAACTGAAACAATTGTTTTATGACAAAAC
* * ** * * *
6642946 AAAATGTTATAACAATTTGAAATAGATAATTGTTCAAATAG------------GAACTGGCTCAG
313 AAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAG
* * * *** *
6642999 TAAACAAAATTATTTTTTAAATATCACACTTATTAATTTTTGAAATATTAATAAATT-GATATTA
378 TAAACATATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAG-TAATA
* * * * * * * * *
6643063 TTTTATTTTGAATAGGCTTATATG-ATGAAAAATAATTGTTTTATGACAAAACAAAAGTTCGTAA
442 TTTTAATTCGAATAAGCTTGTATGAAT-AGAAACAATTGTTTTATAACAAAACAAAAGGTCATAA
* * * *
6643127 TAATTTGAAATAGATAATTATTCAAAT-GACCATAAT
506 TAATTTGAAATAAATAATTGTTCAAATAG-TCATAAC
* * * * * * *
6643163 TATTTGAACCGATTTGATAAACTGACTTATTTTTTAAATCTTTAACTTATTAGTTTTTGAAAAAT
1 TATTTGAACTG-TTCGATAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTG-AATAT
* * * * *** *
6643228 TAATAAAATAATATTATTTTATTTC-AAATAAATTTTTATGAACT-G-AGTCAATTATTTTATGA
64 TAATAAATTAGTATTATTTTA-TTCGAAATAAACTTCTATGAA-TAGAAAAAAATCA-TTTATGA
* * * * * *
6643290 TAAAACAAAATGTCATATTTATTCT-AAATAAATAATTGTTCAAATAGAT-ATGACTATTTGAAC
126 CAAAACAAAAGGTCATAATGATT-TGAAATAGATAATTGTTCAAATAG-TCATAACTATTTGAAC
* * * ** * **
6643353 TTGTTCCATAAACAAATTTATTTTTTTAAATTTCTTATTTATTAATTTTTTGAATGTTAATAAAT
189 TTGTTCGATAAACAGATTTA-TTTTTTAAATCTCTTGCTTATTAATTTTTAGAATAATAATAAAT
* * * * * * *
6643418 TAATATTATTTTATTTCGAATAAGCATGTATGAACTAAAACAATTATTTTATGACTAAACAAAAG
253 TAGTATTATTTTATTTCAAATAAGCTTATATGAACTGAAACAATTGTTTTATGACAAAACAAAAG
* * ** * * *
6643483 GTAAGAACAATTTGAAATAGATAATTATTCTAATAATCTTAACTATTTGAA-TTGGTTCAGTAAA
318 GTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTT-GTTCAGTAAA
* * * *
6643547 CACATTTATTTTTTAAATCTCTTT-CTTATT--TTTTT-AGAATATTATTAATTTAGCAATATTT
382 CATATTTATTTTTTAAATCT-TTTACTTATTAATTTTTGA-AATATTAATAAATTAGTAATATTT
* * ** * **
6643608 T-ACTCTGAATAAGCTTGTATGAACAGAAGTAATTGTTTTATTACAAAAC-AAAGAACAT-ATCA
445 TAATTC-GAATAAGCTTGTATGAATAGAAACAATTGTTTTATAACAAAACAAAAGGTCATAAT-A
* * * *
6643670 ATTTGAGATAGATAATTGTTCAAATAATCATAAG
508 ATTTGAAATAAATAATTGTTCAAATAGTCATAAC
* * **
6643704 TATTTGAACTGATTCGATAAACAGATTTAATTTTTAAATC---T-CTCATTAATTTTCAAGATAT
1 TATTTGAACTG-TTCGATAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGA-ATAT
* ** * * ** *
6643765 TAATAAATTAGTATTATTTTATTTTG-AATAATTTTGTATGAATAG-AAACAATCATTTTACAAT
64 TAATAAATTAGTATTATTTTA-TTCGAAATAAACTTCTATGAATAGAAAAAAATCA-TTTATGAC
* ** * * *
6643828 AAAACAAAATGTCATAATGATTTGAAATAGATAATAATTCAAATGGAT-ATGACAATTTGAACTT
127 AAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAG-TCATAACTATTTGAACTT
* * *** * * *
6643892 GTTC-AGTAAAAATATTTATTTTTTAAATCTCCAACCTATTAATTTTTAGAATATTATTAAATTA
191 GTTCGA-TAAACAGATTTATTTTTTAAATCTCTTGCTTATTAATTTTTAGAATAATAATAAATTA
* ** * * * * **
6643956 GTATTATTTTATTTGAAATAAAATTGTATGAA-TATAAACAATTATTTTATGACAAAATAAAATA
255 GTATTATTTTATTTCAAATAAGCTTATATGAACT-GAAACAATTGTTTTATGACAAAACAAAAGG
* * * ** ** * * * *
6644020 TCAAAATGATTTGAAATAAATAATTGTTTTAAGGGTCATAACTATTTGAACTCGCTCGGTAAATA
319 TCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACA
* * * * * * *
6644085 GATTTATTTTCTAAATCTTTTACTTATTAATTTTTGGAATTTTAATAAATTAGTATTATTGTATT
384 TATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAGTAATATTTTAAT
* * * * * *
6644150 TTGAATAAGCTTTTATGAATAGAAACAATTGGTTTATGACAAAACAAAAGGTCATAACAATTTCA
449 TCGAATAAGCTTGTATGAATAGAAACAATTGTTTTATAACAAAACAAAAGGTCATAATAATTTGA
* *
6644215 AATAGAGAATTGTTCAAATAGTCATAAC
514 AATAAATAATTGTTCAAATAGTCATAAC
* * *
6644243 TATTTG-ACTGTGTTTAGA-AAACATATTTATTTTTTAAAT-TTTTACTTGTTAATTTTTGGAAT
1 TATTTGAAC--TG-TTCGATAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTT-GAAT
* * * ** * **
6644305 ATTAATAAATTTA-TATTATTTTATTCAAAATAAGCTTGC-ATGAACAGAACCAATTGTTTTATG
62 ATTAATAAA-TTAGTATTATTTTATTCGAAATAAACTT-CTATGAATAGAAAAAAATCATTTATG
* *
6644368 ACAAAACAAAAGGTCATAAT-ATTTTGAAATAGATAATTGTTCAGATAGTCGTAACTATTTGAAC
125 ACAAAACAAAAGGTCATAATGA-TTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAC
* * * * * * * *
6644432 ATGTTCAATAAATAGATTAAATTTTTAATTCTCTTGCTCATTAATTTTTAGAATATTAATAAATT
189 TTGTTCGATAAACAGATTTATTTTTTAAATCTCTTGCTTATTAATTTTTAGAATAATAATAAATT
* * *
6644497 AGTATTATTTTATTTCAAATAAGCTTATGTGAACTGAAGCAATTGTTTTACT-ATAAAACAAAAG
254 AGTATTATTTTATTTCAAATAAGCTTATATGAACTGAAACAATTGTTTTA-TGACAAAACAAAAG
* * * * *
6644561 GTCACAATGATTTGAAATAAATAATTATTCAAATACTCATGACTATTTGAACTTGTTCAATAAAC
318 GTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAAC
** *
6644626 ATATTTATTTTTTAAATCTTTTACTTATT-ATTTGTCAAAATATTAATAAATTAATAAT-TTTTA
383 ATATTTATTTTTTAAATCTTTTACTTATTAATTT-TTGAAATATTAATAAATTAGTAATATTTTA
* * *
6644689 ATTCGAATAAGCTTGTATGAATAGAAA-AATTATTTTATAATAAAACAAAAGCTCATAATAATTT
447 ATTCGAATAAGCTTGTATGAATAGAAACAATTGTTTTATAACAAAACAAAAGGTCATAATAATTT
6644753 GAAATAAATAATTGTTCAAATAGTCA-AA-
512 GAAATAAATAATTGTTCAAATAGTCATAAC
* * * * *
6644781 TATTTGAACATGTTCGGTAAACAAATTTATTTTTTAGATCTTTTACTTTTTAATTGTCTT-TATA
1 TATTTGAAC-TGTTCGATAAACAGATTTATTTTTTAAATCTTTTACTTATTAATT-T-TTGAATA
* * *
6644845 TTAATAAATTTGTATTATTTTATTCGAAATAAGCTTCTATAAATAGAAAAAAATCATTTATGACA
63 TTAATAAATTAGTATTATTTTATTCGAAATAAACTTCTATGAATAGAAAAAAATCATTTATGACA
* * * * *
6644910 AAACAAAAGGTTATAGTGATTTCAAATAGATAATTGTTCAAATAGTCATAATTATTTAAACTTGT
128 AAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGT
* * * * * *
6644975 TCGTTAAACAGATTTTTTTTTTAAATCTCTTGGTTATTAGTTTTTAGAATAATGATAACTTAGTA
193 TCGATAAACAGATTTATTTTTTAAATCTCTTGCTTATTAATTTTTAGAATAATAATAAATTAGTA
* * * * * **
6645040 TTATTTTATTTCGAATAAGTTTATATGAACTGAAATGATTTTTTTTACAACAAAAC-AAAGGTCA
258 TTATTTTATTTCAAATAAGCTTATATGAACTGAAA-CAATTGTTTTATGACAAAACAAAAGGTCA
* * * *
6645104 TAACGATTTGAAATAGATAATTATTCAAATAGTCATAATTATTT-AATCTAGTT-AGGTAAGCAT
322 TAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAA-CTTGTTCA-GTAAACAT
* * *
6645167 ATTTATTTTTTAAAATTTTTTACTTATTAATTGTTGAAATATTAATAAATT-GATATTATTTTAA
385 ATTTATTTTTT-AAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAG-TAATATTTTAA
* * * * * ** *
6645231 -TCTAAATAAGTTTGTATGAACAAAAACTATTGTTTTATAACGGAACAAAAGGTCATAACAATTT
448 TTC-GAATAAGCTTGTATGAATAGAAACAATTGTTTTATAACAAAACAAAAGGTCATAATAATTT
* * *
6645295 GTAATAAATAATTGCTCAAATAATCATAAC
512 GAAATAAATAATTGTTCAAATAGTCATAAC
* *
6645325 TATTTAAACTGGTTTGATAAACATG-TTTATTTTTTAAATC--TT--TTATTAATTTTTGAAATA
1 TATTTGAACT-GTTCGATAAACA-GATTTATTTTTTAAATCTTTTACTTATTAATTTTTG-AATA
* * * * * * * ** **
6645385 TTAGTAGATTAGTATTCTTTTATTCTAAACAAACTTATATGAACA-AAAATATTTGTTTTATGAC
63 TTAATAAATTAGTATTATTTTATTCGAAATAAACTTCTATGAATAGAAAA-AAATCATTTATGAC
** * * * * * * *
6645449 AAAACAAAATATCATAATGATTGGAAAAAAAATAATTGTTCAGATAGTTATAATTATTTGAACTG
127 AAAACAAAAGGTCATAATGATTTG-AAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTT
* * * * * * *
6645514 GTTGGATAAATAGAATTATTTTTTAAGTCTCTTGCTCATTAGTTTCTTA-ATATGAATTATTTTA
191 GTTCGATAAACAGATTTATTTTTTAAATCTCTTGCTTATTAATTT-TTAGA-AT-AA-TA--ATA
** * * * * *
6645578 TTTTA-TTTTATTTTATTCCAAATAAGC-TAGCATGAATTGAAA-AAGTTGTTTTATGACAAGAC
250 AATTAGTATTATTTTATTTCAAATAAGCTTA-TATGAACTGAAACAA-TTGTTTTATGACAAAAC
** * * * * *
6645640 --AA----A-AATGATTTGAAATAGATAACGATTTATATAGTCTTAACTATTTAAACTAGTT-AG
313 AAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAG
* * * * * * * *
6645697 CAAACAAATTTATTTTTTAAATCTCTCAGTTATTAATTTTTTGAAATATT-TTATATTAGTATTA
378 TAAACATATTTATTTTTTAAATCTTTTACTTATTAA-TTTTTGAAATATTAATAAATTAGTAATA
* * * * * * *
6645761 TTTTATTTCAAATATGCTTGTATGAATAGAAATAATTGTTTTATGACAAAACAAAATGTTATAAC
442 TTTTAATTCGAATAAGCTTGTATGAATAGAAACAATTGTTTTATAACAAAACAAAAGGTCATAA-
* * * *
6645826 T-ATTTGAAGTATACAATTATTCAAATAGTCATAAC
506 TAATTTGAAATAAATAATTGTTCAAATAGTCATAAC
* * * *
6645861 TATTTAAACTAGTTCGATAAATAGATTTATTTTTTAAATCTCTTA-TTATTAATTTTTGAGAGAT
1 TATTTGAACT-GTTCGATAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGA-ATAT
* * * **
6645925 TAATAAATTACTATT-TTTTATTTTG-AATAAACTTTTAT-AATA-AAAAACAATTGTTATATGA
64 TAATAAATTAGTATTATTTTA-TTCGAAATAAACTTCTATGAATAGAAAAA-AATCATT-TATGA
* * * ** * * * *
6645986 CCAAACAAAAGCTAATAATGATTTGAAATAGATAATTAATGAAATGGCCATAATTATTTGAA-TT
126 CAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTT
* * * * * *
6646050 GATTTGGTAAACA-AGTTTACTTTTTAAA----TTACTTATTAATTTTTGGAATACTAATAAATT
191 G-TTCGATAAACAGA-TTTATTTTTTAAATCTCTTGCTTATTAATTTTTAGAATAATAATAAATT
** * * * *
6646110 AGTATTATTTTATTTTGAATAAGCTTGTATGAATTGAATCAATTGTTTTATAACAAAACAAAAGG
254 AGTATTATTTTATTTCAAATAAGCTTATATGAACTGAAACAATTGTTTTATGACAAAACAAAAGG
* * * * **
6646175 TCATAATGATTTTAAATAGATAATTGTTCAAATAGTCATAACTATTTGAATTTATTTGGTAAAC-
319 TCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACA
* * * * * *
6646239 TAATTTATTTTTTAAAACTCTTGCTTATTAATTTTTGAAATATTAAGAAATTAGTATTATTTTAT
384 T-ATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAGTAATATTTTAA
* * * *
6646304 TTTGGATAAGCTTTTATGAACT-GAAACAATTGTTTTATATCAAAACAAAAGG-----------T
448 TTCGAATAAGCTTGTATGAA-TAGAAACAATTGTTTTATAACAAAACAAAAGGTCATAATAATTT
* *
6646357 -AAATAAATAATTGTTCAAATAGTCATCAT
512 GAAATAAATAATTGTTCAAATAGTCATAAC
* * *
6646386 TATTTGAACTTATTCAATAAACAGATTTATTTTTTCAAAT-TTGTTCCTTATTAATTTTTTGAAT
1 TATTTGAAC-TGTTCGATAAACAGATTTATTTTTT-AAATCTT-TTACTTATTAA-TTTTTGAAT
* * * * * * *
6646450 GTTAATAAATT--TAATTTTTTTATTCCAAATAAGA-TTGTAAG-ATATGAAACAAAT-ATTTTC
62 ATTAATAAATTAGT-ATTATTTTATTCGAAATAA-ACTTCTATGAATA-GAAAAAAATCA-TTTA
* * * * * * * * * * **
6646510 TAAC-TAACAAAAGATTAGAACGATTTAAAATATATAATTATTCTAATAGTTTTAACTATTTGAA
123 TGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAA
* * * * *
6646574 -TTGGTTCGACAAACACATTTATTTTTTAGA--TC-T-CTTATTAATTTTT-GAAATATTATTAA
188 CTT-GTTCGATAAACAGATTTATTTTTTAAATCTCTTGCTTATTAATTTTTAG-AATAATAATAA
* *
6646633 ATTAGTATTATTTT-TAATCAAATAAGCTT-TATGATCAT-AAACAATTGTTTTATGACAAAACA
251 ATTAGTATTATTTTAT-TTCAAATAAGCTTATATGAAC-TGAAACAATTGTTTTATGACAAAACA
* * ** * *
6646695 AAAGGTCAT-ATCGATTTGAAATAGATAATTATTCATATAGTC-TTACTATTCAAAATGGTT-AG
314 AAAGGTCATAAT-GATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCA-
* * * ** * * * *
6646757 GCAATTAGAT-TTTATTTTTT-AATTTTCTTTGTTATTAAATGTTAAAATATTATTAAATTAGTA
377 GTAA--ACATATTTATTTTTTAAATCTT-TTACTTATTAATTTTTGAAATATTAATAAATTAGTA
* ** * * * * * * *
6646820 TTATTTTATATT-GAATAAAATAGTATGAATAGAACCAATTATTTGATGACAAAATAAAAGGTTA
439 ATATTTTA-ATTCGAATAAGCTTGTATGAATAGAAACAATTGTTTTATAACAAAACAAAAGGTCA
* * * *
6646884 TAACAAATTGAAATAGATAATTATTCAAATAGTC--AAC
503 TAATAATTTGAAATAAATAATTGTTCAAATAGTCATAAC
* * * * * * * * * * * *
6646921 TTTTTAAAATGGTTTGGTAAAAAGTTTTACTTTTTACATCTCTTACTGATTAATTTTTTAAATAT
1 TATTTGAACT-GTTCGATAAACAGATTTATTTTTTAAATCTTTTACTTATTAA-TTTTTGAATAT
6646986 TAATAAA
64 TAATAAA
6646993 AGGTTAGAAT
Statistics
Matches: 3028, Mismatches: 626, Indels: 346
0.76 0.16 0.09
Matches are distributed among these distances:
524 21 0.01
525 202 0.07
526 129 0.04
527 44 0.01
528 48 0.02
529 49 0.02
530 5 0.00
531 45 0.01
532 195 0.06
533 19 0.01
534 33 0.01
535 31 0.01
536 357 0.12
537 333 0.11
538 186 0.06
539 379 0.13
540 189 0.06
541 211 0.07
542 415 0.14
543 21 0.01
544 83 0.03
545 28 0.01
546 5 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (541 bp):
TATTTGAACTGTTCGATAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAATATTA
ATAAATTAGTATTATTTTATTCGAAATAAACTTCTATGAATAGAAAAAAATCATTTATGACAAAA
CAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCG
ATAAACAGATTTATTTTTTAAATCTCTTGCTTATTAATTTTTAGAATAATAATAAATTAGTATTA
TTTTATTTCAAATAAGCTTATATGAACTGAAACAATTGTTTTATGACAAAACAAAAGGTCATAAT
GATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACATATTTAT
TTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAGTAATATTTTAATTCGAATA
AGCTTGTATGAATAGAAACAATTGTTTTATAACAAAACAAAAGGTCATAATAATTTGAAATAAAT
AATTGTTCAAATAGTCATAAC
Found at i:6645135 original size:16 final size:17
Alignment explanation
Indices: 6645114--6645146 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
6645104 TAACGATTTG
6645114 AAATAG-ATAATTATTC
1 AAATAGCATAATTATTC
6645130 AAATAGTCATAATTATT
1 AAATAG-CATAATTATT
6645147 TAATCTAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (17 bp):
AAATAGCATAATTATTC
Found at i:6645580 original size:5 final size:5
Alignment explanation
Indices: 6645570--6645594 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
6645560 TTAATATGAA
6645570 TTATT TTATT TTATT TTATT TTATT
1 TTATT TTATT TTATT TTATT TTATT
6645595 CCAAATAAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:6646500 original size:169 final size:168
Alignment explanation
Indices: 6646187--6646501 Score: 359
Period size: 169 Copynumber: 1.9 Consensus size: 168
6646177 ATAATGATTT
* * ***
6646187 TAAATAGATAATTGTTCAAATAGTCATAACTATTTGAATTTATTTGGTAAACTAATTTATTTTTT
1 TAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTTATTCAATAAACTAATTTATTTTTT
* **** *
6646252 AAAACTCTTGCTTATTAATTTTTGAAATATTAAGAAATTAGTATTATTTTATTTTGGATAAGCTT
66 AAAACTCTTCCTTATTAATTTTTGAAATATTAAGAAATTAG-ATTATTTTATTCCAAATAAGATT
* *
6646317 TTATGAACTGAAACAATTGTTTTATATCAAAACAAAAGG
130 GTAAGAACTGAAACAATTGTTTTATATCAAAACAAAAGG
* *
6646356 TAAATAAATAATTGTTCAAATAGTCATCATTATTTGAACTTATTCAATAAAC-AGATTTATTTTT
1 TAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTTATTCAATAAACTA-ATTTATTTTT
** * * * *
6646420 TCAAATTTGTTCCTTATTAATTTTTTG-AATGTTAATAAATTTA-ATTTTTTTATTCCAAATAAG
65 T-AAAACTCTTCCTTATTAA-TTTTTGAAATATTAAGAAA-TTAGATTATTTTATTCCAAATAAG
6646483 ATTGTAAGATA-TGAAACAA
127 ATTGTAAGA-ACTGAAACAA
6646502 ATATTTTCTA
Statistics
Matches: 120, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
168 1 0.01
169 85 0.71
170 25 0.21
171 9 0.08
ACGTcount: A:0.39, C:0.08, G:0.09, T:0.44
Consensus pattern (168 bp):
TAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTTATTCAATAAACTAATTTATTTTTT
AAAACTCTTCCTTATTAATTTTTGAAATATTAAGAAATTAGATTATTTTATTCCAAATAAGATTG
TAAGAACTGAAACAATTGTTTTATATCAAAACAAAAGG
Found at i:6648039 original size:180 final size:180
Alignment explanation
Indices: 6646990--6649379 Score: 1932
Period size: 181 Copynumber: 13.3 Consensus size: 180
6646980 AAATATTAAT
* * * * * * * *
6646990 AAAAGGTTAGAATAATTTGAAATAGATAATTATTCTAACAGTCTTAACTATTTGAACTGGTCCAG
1 AAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAG
* * * * * *
6647055 CAAATACATTTATTTTTTAAA-CAT-TT-C--ACTAATTTTTGGAATATTATTAAATTAGTATTA
66 TAAACAGATTTATTTTTTAAATC-TCTTACTTATTAATTTTTAGAATATTAATAAATTAGTATTA
* * * * *
6647115 TTTTTATCCGAATAAGCTAGTATG-ATAAAAAACAATTATTTTATGAGAAAGC
130 -TTTTATTCGAATAAGCTTGTATGAAT-AGAAACAATTATTTTATGACAAAAC
* * * * * *
6647167 -AAAGATCATAATGATTT-AAGATTGATATTTTTTCAAATAGTCATAACTATTTGAACTAGTTTA
1 AAAAGGTCATAATGATTTGAA-ATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCA
* * * *
6647230 GAAAACA-ACTTTA-GTTTTAAATCTC-AAGCTTATTAATTTTT-GAAATATTAATAAAGTAGTA
65 GTAAACAGA-TTTATTTTTTAAATCTCTTA-CTTATTAATTTTTAG-AATATTAATAAATTAGTA
* * * * * *
6647291 TTATTTTATTTTGAATAAGTTTTTATGAA-ATGAAACAATTGTTTTATGATAAAAT
127 TTATTTTA-TTCGAATAAGCTTGTATGAATA-GAAACAATTATTTTATGACAAAAC
* *
6647346 AAAAGGTCATAATAACTTT-AAATAGATAATTGTTCAAATAGTCA-AATCTATTTGAACTTGTT-
1 AAAAGGTCATAATGA-TTTGAAATAGATAATTATTCAAATAGTCATAA-CTATTTGAACTTGTTC
* * * * * * *
6647408 TGATAAATAGATTTATTTTATTTAAATCTCTTGCTCATTAATTTTTTGAATGTTAATAAATTACT
64 AG-TAAACAGATTTA-TTT-TTTAAATCTCTTACTTATTAATTTTTAGAATATTAATAAATTAGT
* * *
6647473 ATTATTTTATTCTAAATAAGCTTGTATGAACT-GAAATAATTATTTTATGACTAAAC
126 ATTATTTTATTC-GAATAAGCTTGTATGAA-TAGAAACAATTATTTTATGACAAAAC
* * * * * * *
6647529 AAAAGGTAAGAATGATTTGAAATAGATAATTATTCTAATAGTCTTAACTATTTGAACTGGTTTAA
1 AAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAG
* * * * * * * * *
6647594 TAAACATA-TTATTGTTCAAA--GC-T-CTTATTAATTTTTGGAATATTATTAATTTAGCAATAT
66 TAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAGAATATTAATAAATTAGTATTAT
* * *
6647654 TTTACTTCGAATAAGTTTGTATGAACA-AAAGCAATTATTTTATTACAAAAC
131 TTTA-TTCGAATAAGCTTGTATGAATAGAAA-CAATTATTTTATGACAAAAC
* * ** * *
6647705 -AAAGATCATAATGATTT-AAGATAGATAATTGTTCAAATAGTCATATGTATTT-AAATTAGATC
1 AAAAGGTCATAATGATTTGAA-ATAGATAATTATTCAAATAGTCATAACTATTTGAACTT-GTTC
* * * * *
6647767 -GATAAATAAAGTTAATTCTTAAA--TCTT--TTATTAA-TTTTAGAAATATTAATAAATTAGTA
64 AG-TAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAG-AATATTAATAAATTAGTA
** * * *
6647826 TTATTTTATTCTGAATAATTTTGTATAAATAGAAACAATCATTTTACGACAAAAC
127 TTATTTTATTC-GAATAAGCTTGTATGAATAGAAACAATTATTTTATGACAAAAC
** * *
6647881 AAAATTTCATAATGATTTGAAATAGATAA-TATTTCAATTA-TACATGACTATTTGAACTTGTTC
1 AAAAGGTCATAATGATTTGAAATAGATAATTA-TTCAAATAGT-CATAACTATTTGAACTTGTTC
* *
6647944 AGTAAGCAGATTTATTTTTTAAATCTCTAACTTATTAA-TTTTAGAATATTAATAAATTAGTATT
64 AGTAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAGAATATTAATAAATTAGTATT
* * ** *
6648008 ATTTTGTTTCAAATAAAATTGTATGAATAGAAACAATTGTTTTATGACAAAAC
129 ATTTT-ATTCGAATAAGCTTGTATGAATAGAAACAATTATTTTATGACAAAAC
* * * * ** * ** * *
6648061 AAAAGATAAAAATGATTTGAAATAAATAATTATTCAAAGGGTCACAACTATTCAAACTCGCTT-G
1 AAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTG-TTCA
* * *
6648125 GTAAGCAGATTTATTTTTTAAATC-CTTTACTTATTAATTTTTAAAATTTTAATAAATTAGTATT
65 GTAAACAGATTTATTTTTTAAATCTC-TTACTTATTAATTTTTAGAATATTAATAAATTAGTATT
* * * * **
6648189 ATTTTATACTGAATAAGCTTTTATGAACAAAAACAATTGGTTTATGACAAAAC
129 ATTTTATTC-GAATAAGCTTGTATGAATAGAAACAATTATTTTATGACAAAAC
* ** * * * * *
6648242 AAAAGATCATAACAATTTTAAATAGATAATTATTCAAATAGTCATAATTATTTGAACGTATTTAG
1 AAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAG
* * *
6648307 AAAACATATTTATTTTTTAAAT-TATTACTTATTAATTTTTAGAATATTAATAAATTTA-TATTA
66 TAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAGAATATTAATAAA-TTAGTATTA
* * *
6648370 TTTTATTCAAAATAAGCTTGCATGAATAGAACCAATTATTTTATGACAAAAC
130 TTTTATTC-GAATAAGCTTGTATGAATAGAAACAATTATTTTATGACAAAAC
* * *
6648422 AAAAGGTCATAATGTTTTGAAATAGATAATTATTCAGATAG-CTATAACTATTTGAACATGTTC-
1 AAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTC-ATAACTATTTGAACTTGTTCA
* * * *
6648485 GATAAATAGATTAATTTTTTAATTCTCTTACTCATTAATTTTTAGAATATTAATAAATTAGTATT
65 G-TAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAGAATATTAATAAATTAGTATT
* * * * *
6648550 ATTTTATTTCAAATAAGCTTATATGAATTGAAACAATTGTTTTATTACAAAAC
129 ATTTTA-TTCGAATAAGCTTGTATGAATAGAAACAATTATTTTATGACAAAAC
* * * * ** * * * * *
6648603 AAAGGGTCACAATGATTTAAAAAATTTAATTATTCATATACTCATAATTATTTAAACTTGTT-TG
1 AAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAG
* * * * *
6648667 ATAAACATATTTATTTTTTAAATCTTTTACTTATT-ATTTGTCAAAATATTAATAAATTAATATT
66 -TAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTT-TTAGAATATTAATAAATTAGTATT
* * * * * *
6648731 TTTTTAATCCGAATAAGCTTGTATGAACCA-AAATAATTGTTTTATGACAAAAT
129 ATTTT-ATTCGAATAAGCTTGTATGAA-TAGAAACAATTATTTTATGACAAAAC
* ** * ** *
6648784 AAAAGGTCCTAACAATTTGAAATAAATAATTATTCAAATAGTCATAAAAATTTGAACTTGTTCAA
1 AAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAG
* * ** * * * *
6648849 TAAATATATTTATTTGGTAGATATTTTACTTATTAATTGTCTT--AATATTAATAAATTTGTATT
66 TAAACAGATTTATTTTTTAAATCTCTTACTTATTAATT-T-TTAGAATATTAATAAATTAGTATT
* * * *
6648912 ATTTTATTCAAAATAAGCTTGTATGAATAGAAAAAAATCATTTTATGAGAAAAC
129 ATTTTATTC-GAATAAGCTTGTATGAATAG-AAACAATTATTTTATGACAAAAC
* * * * * * *
6648966 AAAAGGTTATAGTGATTTCAAATAGATAATTGTTCAAATAGTCATAATTATTTAAACTTGTTCAT
1 AAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAG
* * *
6649031 TAAACAGATTCATTTTTTAAATCTCTTAATTATTAATTTTTAGAATATTGATAACA-TAGTATTA
66 TAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAGAATATTAATAA-ATTAGTATTA
* * * ** * * *
6649095 TTTTATTTTGAATAAGCTTATATG-ATCCGAAATGATTTTTTTATCATAAAAC
130 TTTTA-TTCGAATAAGCTTGTATGAAT-AGAAACAATTATTTTATGACAAAAC
* ** * * * *
6649147 AAATGACCATAATGATTTGACATAGATAATTATTGAAATAGTCA-AGACTATTTGATCTAGTTCA
1 AAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATA-ACTATTTGAACTTGTTCA
* * * * * * * * *
6649211 ATAAGCATATTTATGTTTTAAATTTTTTACTTATTAATTGTT-GAAATATTAATAAATTGGTATC
65 GTAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAG-AATATTAATAAATTAGTATT
* * * * * *
6649275 ATTTTAATTTGAATAAGCTTGTA--AAGCAGAAACTATTGTCTTATAACAAAAC
129 ATTTT-ATTCGAATAAGCTTGTATGAA-TAGAAACAATTATTTTATGACAAAAC
* ** * ** *
6649327 AAAAAGTCATAACAATTTGAAATAAATAATTGCTCAAATAGTCATAACAATTT
1 AAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTT
6649380 ATTAACAAAT
Statistics
Matches: 1764, Mismatches: 362, Indels: 171
0.77 0.16 0.07
Matches are distributed among these distances:
174 5 0.00
175 71 0.04
176 195 0.11
177 65 0.04
178 15 0.01
179 69 0.04
180 418 0.24
181 632 0.36
182 154 0.09
183 137 0.08
184 3 0.00
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (180 bp):
AAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAG
TAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAGAATATTAATAAATTAGTATTAT
TTTATTCGAATAAGCTTGTATGAATAGAAACAATTATTTTATGACAAAAC
Found at i:6648203 original size:361 final size:359
Alignment explanation
Indices: 6646990--6649373 Score: 1941
Period size: 361 Copynumber: 6.6 Consensus size: 359
6646980 AAATATTAAT
* * * * * * * **
6646990 AAAAGGTTAGAATAATTTGAAATAGATAATTATTCTAACAGTCTTAACTATTTGAACTGGTCCAG
1 AAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTGA-
* * * ** *
6647055 CAAATACATTTATTTTTTAAA-CATTT-C--ACTAATTTTTGGAATATTATTAAATTAGTATTAT
65 TAAATAGATTTATTTTTTAAATC-TTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTAT
** * * * * *
6647116 TTT-TATCCGAATAAGCTAGTATG-ATAAAAAACAATTATTTTATGAGAAAGC-AAAGATCATAA
129 TTTAT-TCTAAATAAGCTTGTATGAAT-AGAAACAATTATTTTATGACAAAACAAAAGGTCATAA
* * * * * * *
6647178 TGATTT-AAGATTGATATTTTTTCAAATAGTCATAACTATTTGAACTAGTTTAGAAAACA-ACTT
192 TGATTTGAA-ATAGATAATTATTC-AATAGTCATAATTATTTGAACTTGTTCAGTAAACATA-TT
* * * *
6647241 TA-GTTTTAAATCTC-AAGCTTATTAATTTTT-GAAATATTAATAAAGTAGTATTATTTTATTTT
254 TATTTTTTAAATCTCTAA-CTTATTAATTTTTAG-AATATTAATAAATTAGTATTATTTTAATTC
* * * *
6647303 GAATAAGTTTTTATGAA-ATGAAACAATTGTTTTATGATAAAAT
317 GAATAAGCTTGTATGAACA-GAAACAATTGTTTTATGACAAAAC
* *
6647346 AAAAGGTCATAATAACTTT-AAATAGATAATTGTTCAAATAGTCA-AATCTATTTGAACTTGTTT
1 AAAAGGTCATAATGA-TTTGAAATAGATAATTATTCAAATAGTCATAA-CTATTTGAACTTG-TT
* * ** * *
6647409 GATAAATAGATTTATTTTATTTAAATCTCTTGCTCATTAATTTTTTGAATGTTAATAAATTACTA
63 GATAAATAGATTTA-TTT-TTTAAATCT-TTACTTATTAATTTTTAAAATATTAATAAATTAGTA
* * *
6647474 TTATTTTATTCTAAATAAGCTTGTATGAACT-GAAATAATTATTTTATGACTAAACAAAAGGTAA
125 TTATTTTATTCTAAATAAGCTTGTATGAA-TAGAAACAATTATTTTATGACAAAACAAAAGGTCA
* * * * * *
6647538 GAATGATTTGAAATAGATAATTATTCTAATAGTCTTAACTATTTGAACTGGTTTAATAAACATA-
189 TAATGATTTGAAATAGATAATTATTC-AATAGTCATAATTATTTGAACTTGTTCAGTAAACATAT
* * * * * * * * *
6647602 TTATTGTTCAAA--GCT--CTTATTAATTTTTGGAATATTATTAATTTAGCAATATTTTACTTCG
253 TTATTTTTTAAATCTCTAACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTAATTCG
* * *
6647663 AATAAGTTTGTATGAACA-AAAGCAATTATTTTATTACAAAAC
318 AATAAGCTTGTATGAACAGAAA-CAATTGTTTTATGACAAAAC
* * ** * *
6647705 -AAAGATCATAATGATTT-AAGATAGATAATTGTTCAAATAGTCATATGTATTT-AAATTAGATC
1 AAAAGGTCATAATGATTTGAA-ATAGATAATTATTCAAATAGTCATAACTATTTGAACTT-G-TT
* * * *
6647767 GATAAATAAAGTTAATTCTTAAATC-TT--TTATTAA-TTTTAGAAATATTAATAAATTAGTATT
63 GATAAATAGATTTATTTTTTAAATCTTTACTTATTAATTTTTA-AAATATTAATAAATTAGTATT
* ** * * * **
6647828 ATTTTATTCTGAATAATTTTGTATAAATAGAAACAATCATTTTACGACAAAACAAAATTTCATAA
127 ATTTTATTCTAAATAAGCTTGTATGAATAGAAACAATTATTTTATGACAAAACAAAAGGTCATAA
* * * *
6647893 TGATTTGAAATAGATAA-TATTTCAATTA-TACATGACTATTTGAACTTGTTCAGTAAGCAGATT
192 TGATTTGAAATAGATAATTA-TTCAA-TAGT-CATAATTATTTGAACTTGTTCAGTAAACATATT
** *
6647956 TATTTTTTAAATCTCTAACTTATTAA-TTTTAGAATATTAATAAATTAGTATTATTTTGTTTCAA
254 TATTTTTTAAATCTCTAACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTAATTCGA
** *
6648020 ATAAAATTGTATGAATAGAAACAATTGTTTTATGACAAAAC
319 ATAAGCTTGTATGAACAGAAACAATTGTTTTATGACAAAAC
* * * * ** * ** * *
6648061 AAAAGATAAAAATGATTTGAAATAAATAATTATTCAAAGGGTCACAACTATTCAAACTCGCTTGG
1 AAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTG-TTGA
** *
6648126 TAAGCAGATTTATTTTTTAAATCCTTTACTTATTAATTTTTAAAATTTTAATAAATTAGTATTAT
65 TAAATAGATTTATTTTTTAAAT-CTTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTAT
* * * * * ** * **
6648191 TTTATACTGAATAAGCTTTTATGAACAAAAACAATTGGTTTATGACAAAACAAAAGATCATAACA
129 TTTATTCTAAATAAGCTTGTATGAATAGAAACAATTATTTTATGACAAAACAAAAGGTCATAATG
* * * * *
6648256 ATTTTAAATAGATAATTATTCAAATAGTCATAATTATTTGAACGTATTTAGAAAACATATTTATT
194 ATTTGAAATAGATAATTATTC-AATAGTCATAATTATTTGAACTTGTTCAGTAAACATATTTATT
* * *
6648321 TTTTAAAT-TATTACTTATTAATTTTTAGAATATTAATAAATTTA-TATTATTTT-ATTCAAAAT
258 TTTTAAATCTCTAACTTATTAATTTTTAGAATATTAATAAA-TTAGTATTATTTTAATTC-GAAT
* * * *
6648383 AAGCTTGCATGAATAGAACCAATTATTTTATGACAAAAC
321 AAGCTTGTATGAACAGAAACAATTGTTTTATGACAAAAC
* * *
6648422 AAAAGGTCATAATGTTTTGAAATAGATAATTATTCAGATAG-CTATAACTATTTGAACATGTTCG
1 AAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTC-ATAACTATTTGAACTTGTT-G
* * * *
6648486 ATAAATAGATTAATTTTTTAATTCTCTTACTCATTAATTTTTAGAATATTAATAAATTAGTATTA
64 ATAAATAGATTTATTTTTTAAATCT-TTACTTATTAATTTTTAAAATATTAATAAATTAGTATTA
* * * * * *
6648551 TTTTATT-TCAAATAAGCTTATATGAATTGAAACAATTGTTTTATTACAAAACAAAGGGTCACAA
128 TTTTATTCT-AAATAAGCTTGTATGAATAGAAACAATTATTTTATGACAAAACAAAAGGTCATAA
* * ** * * *
6648615 TGATTTAAAAAATTTAATTATTCATATACTCATAATTATTTAAACTTGTT-TGATAAACATATTT
192 TGATTTGAAATAGATAATTATTCA-ATAGTCATAATTATTTGAACTTGTTCAG-TAAACATATTT
* * * * * * *
6648679 ATTTTTTAAATCTTTTACTTATT-ATTTGTCAAAATATTAATAAATTAATATTTTTTTAATCCGA
255 ATTTTTTAAATCTCTAACTTATTAATTT-TTAGAATATTAATAAATTAGTATTATTTTAATTCGA
* *
6648743 ATAAGCTTGTATGAACCA-AAATAATTGTTTTATGACAAAAT
319 ATAAGCTTGTATGAA-CAGAAACAATTGTTTTATGACAAAAC
* ** * ** *
6648784 AAAAGGTCCTAACAATTTGAAATAAATAATTATTCAAATAGTCATAAAAATTTGAACTTGTTCAA
1 AAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTT-GA
* ** *
6648849 TAAATATATTTATTTGGTAGATAT-TTTACTTATTAATTGTCTT--AATATTAATAAATTTGTAT
65 TAAATAGATTTATTTTTTA-A-ATCTTTACTTATTAATT-T-TTAAAATATTAATAAATTAGTAT
* * * * *
6648911 TATTTTATTCAAAATAAGCTTGTATGAATAGAAAAAAATCATTTTATGAGAAAACAAAAGGTTAT
126 TATTTTATTCTAAATAAGCTTGTATGAATAG-AAACAATTATTTTATGACAAAACAAAAGGTCAT
* * * * * *
6648976 AGTGATTTCAAATAGATAATTGTTCAAATAGTCATAATTATTTAAACTTGTTCATTAAACAGATT
190 AATGATTTGAAATAGATAATTATTC-AATAGTCATAATTATTTGAACTTGTTCAGTAAACATATT
* * * *
6649041 CATTTTTTAAATCTCTTAA-TTATTAATTTTTAGAATATTGATAACA-TAGTATTATTTTATTTT
254 TATTTTTTAAATCTC-TAACTTATTAATTTTTAGAATATTAATAA-ATTAGTATTATTTTAATTC
* * * ** * * *
6649104 GAATAAGCTTATATGATCCGAAATGATTTTTTTATCATAAAAC
317 GAATAAGCTTGTATGAACAGAAACAATTGTTTTATGACAAAAC
* ** * * * * *
6649147 AAATGACCATAATGATTTGACATAGATAATTATTGAAATAGTCA-AGACTATTTGATCTAGTTCA
1 AAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATA-ACTATTTGAACTTGTT-G
** * * * * * * *
6649211 ATAAGCATATTTATGTTTTAAATTTTTTACTTATTAATTGTTGAAATATTAATAAATTGGTATCA
64 ATAAATAGATTTATTTTTTAAA-TCTTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTA
* * * * * * *
6649276 TTTTAATT-TGAATAAGCTTGTA--AAGCAGAAACTATTGTCTTATAACAAAACAAAAAGTCATA
128 TTTT-ATTCTAAATAAGCTTGTATGAA-TAGAAACAATTATTTTATGACAAAACAAAAGGTCATA
** * **
6649338 ACAATTTGAAATAAATAATTGCTCAAATAGTCATAA
191 ATGATTTGAAATAGATAATTATTC-AATAGTCATAA
6649374 CAATTTATTA
Statistics
Matches: 1640, Mismatches: 308, Indels: 155
0.78 0.15 0.07
Matches are distributed among these distances:
351 10 0.01
352 121 0.07
353 10 0.01
354 2 0.00
355 4 0.00
356 125 0.08
357 88 0.05
358 70 0.04
359 74 0.05
360 25 0.02
361 478 0.29
362 279 0.17
363 336 0.20
364 18 0.01
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (359 bp):
AAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTGAT
AAATAGATTTATTTTTTAAATCTTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTT
TATTCTAAATAAGCTTGTATGAATAGAAACAATTATTTTATGACAAAACAAAAGGTCATAATGAT
TTGAAATAGATAATTATTCAATAGTCATAATTATTTGAACTTGTTCAGTAAACATATTTATTTTT
TAAATCTCTAACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTAATTCGAATAAGCT
TGTATGAACAGAAACAATTGTTTTATGACAAAAC
Found at i:6648282 original size:16 final size:17
Alignment explanation
Indices: 6648261--6648293 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
6648251 TAACAATTTT
6648261 AAATAG-ATAATTATTC
1 AAATAGCATAATTATTC
6648277 AAATAGTCATAATTATT
1 AAATAG-CATAATTATT
6648294 TGAACGTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (17 bp):
AAATAGCATAATTATTC
Found at i:6649827 original size:16 final size:17
Alignment explanation
Indices: 6649795--6649827 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
6649785 AATAAGTTCA
6649795 AATAGTTATGACTATTTG
1 AATAGTTAT-ACTATTTG
6649813 AATAGTTAT-CTATTT
1 AATAGTTATACTATTT
6649828 CAAATTGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.33, C:0.06, G:0.12, T:0.48
Consensus pattern (17 bp):
AATAGTTATACTATTTG
Found at i:6650427 original size:181 final size:181
Alignment explanation
Indices: 6649699--6651139 Score: 735
Period size: 181 Copynumber: 8.1 Consensus size: 181
6649689 ACAAACGGAT
* * * *
6649699 TTACAAGTTTATTTGAAATAAAATAATACTAATTT-ATCAATATTTCAAGAATTAGT-AC--A-A
1 TTACAAGCTTATTTGAAATAAAATAATACTAATTTAAT-AATATTTTAAAAATTATTAACTAAGA
* * * ** * * * *
6649759 GATTCAAAAAATAAATCTATTTA-TCAAATAAGTTCAAATAGTTATGACTATTTGAATAGTTATC
65 GATTTAAAAAATAAATTTA-TTAGCCAAACCAGTTCAAATAGTTAAGACTATATGAACAATTATC
* * * * * * *
6649823 TATTTCAAATTGTTATAACCTTTTGTTCTACCATAAAACT-ATTATTTCTA--T-
129 TATTTCAAATAGTTATGACATTTTATTTTATCATAAAA-TAATTTTTTC-AGCTC
* ** * *
6649874 TTATATAATTTATTTGAAATAAAATAATACTAAATTAATAATATTCTAAAAATTCA-TAACTAAG
1 TTACA-AGCTTATTTGAAATAAAATAATACTAATTTAATAATATTTTAAAAATT-ATTAACTAAG
* * * * *
6649938 AGATTTAAAAAATAAATTTATTAGTCGAACCAATTCAAATAGTTAAGACTGTATGAATAATTATC
64 AGATTTAAAAAATAAATTTATTAGCCAAACCAGTTCAAATAGTTAAGACTATATGAACAATTATC
* * * *
6650003 TATTTTAAATTA-TTATGATATTTTATTTTGTTATAAAATAATTATTTT-AGCTC
129 TATTTCAAA-TAGTTATGACATTTTATTTTATCATAAAATAATT-TTTTCAGCTC
* * * * * * * *
6650056 ATCCAAGTTTATTTGTAATAAAATAAAACTAATTTATTAATA-TTTCAAAATT-TT-A-TAAAAG
1 TTACAAGCTTATTTGAAATAAAATAATACTAATTTAATAATATTTTAAAAATTATTAACTAAGAG
* * * * * * *
6650117 ATTTAAAAAATAATTTTATTTA-TCAAACTAGTTTAAATAATTATA-ACTATTTGAACAATTATA
66 ATTTAAAAAATAAATTTA-TTAGCCAAACCAGTTCAAATAGTTA-AGACTATATGAACAATTATC
* * * * * * * *
6650180 TATTTCACATTGTTATAACCTTTTGTTTTACCATAAAATAATTATTTCTA--TT
129 TATTTCAAATAGTTATGACATTTTATTTTATCATAAAATAATTTTTTC-AGCTC
* * *
6650232 TATACAAGCTTATTT-AGAATAAAATAATACTAATCTAATAATATTTTGACAATTATTAACTAAG
1 T-TACAAGCTTATTTGA-AATAAAATAATACTAATTTAATAATATTTTAAAAATTATTAACTAAG
* * * * * *
6650296 ATATTTAAAAAATAAATTTGTTTGCCAAACTACTTCAAATAGTTAAGGCTATATGAACAATTATC
64 AGATTTAAAAAATAAATTTATTAGCCAAACCAGTTCAAATAGTTAAGACTATATGAACAATTATC
* * *
6650361 TATATCAAATAGTTATGACATTTTATTTTATCGTAAAACAATTTTTTCAGCTC
129 TATTTCAAATAGTTATGACATTTTATTTTATCATAAAATAATTTTTTCAGCTC
* * * * * *
6650414 TTACTAA-CTTATTTGGAATAAAATAA-ATTTAATTTATTAATATTTCAAAAATTAATAAGTAAG
1 TTAC-AAGCTTATTTGAAATAAAATAATA-CTAATTTAATAATATTTTAAAAATTATTAACTAAG
* * * * * * * *
6650477 AGATTTAAAAAATAATTTTGTTAGCCAAACCAGTTCAAATAATTATGAATGTTTGAACAATAATC
64 AGATTTAAAAAATAAATTTATTAGCCAAACCAGTTCAAATAGTTAAGACTATATGAACAATTATC
* * * * * * * *
6650542 TATTTTAAATTGTTATTACCTTTTGTTTTGTCATAAAATAAATGTCTTT--GTTC
129 TATTTCAAATAGTTATGACATTTTATTTTATCATAAAAT-AAT-TTTTTCAGCTC
* * * * * * * * * * *
6650595 CTATAA-ATT-TGTTCAAA-AAAATAATATTAATTTATTAATATCTTGAAAATTAATAAGTAATA
1 TTACAAGCTTAT-TTGAAATAAAATAATACTAATTTAATAATATTTTAAAAATTATTAACTAAGA
* * * * * * * * *
6650657 GATCTAAAAAATAAATATGTTTGCTAAACTAGTTCAATTAGTTATA-ACTATTTGAATAATTA-C
65 GATTTAAAAAATAAATTTATTAGCCAAACCAGTTCAAATAGTTA-AGACTATATGAACAATTATC
* * * * *
6650720 TTATTTCAAATTGTTATGACCA-TTTGTTTTATCATAAAACAATTATTTT-TGTTC
129 -TATTTCAAATAGTTATGA-CATTTTATTTTATCATAAAATAATT-TTTTCAGCTC
* * * ** * * *
6650774 ATAC-AGTCTTATTCGGAATAACGTAATGCTAATTT-A-AA-A--TT----A--A-TAAGTAATA
1 TTACAAG-CTTATTTGAAATAAAATAATACTAATTTAATAATATTTTAAAAATTATTAACTAAGA
* * * * * ** * * * * * *
6650826 GATTTAGAAAATATATATGTTGGCCTGATCAGTGCTAATAGTTATGACTGTTTGAACAATTATCT
65 GATTTAAAAAATAAATTTATTAGCCAAACCAGTTCAAATAGTTAAGACTATATGAACAATTATCT
* * * * * * * *
6650891 A-TTCAAAATCGTTATGACATTTTGTTTTGTCACAAAACAATTGTTTCTG-TT
130 ATTTC-AAATAGTTATGACATTTTATTTTATCATAAAATAATTTTTTCAGCTC
* * * * **
6650942 TATACCAA-CTTATTTGGAATAACATAATTCTAATTTATTAATA-TTCCAAAA--ATTAAC-AAG
1 T-TA-CAAGCTTATTTGAAATAAAATAATACTAATTTAATAATATTTTAAAAATTATTAACTAAG
* *** * * * *
6651002 AGATTTAAAAAATGAATTTATTTA-TTGAACAAGTTCAAATAGTTATGGCTATTTGAACAATTAT
64 AGATTTAAAAAATAAATTTA-TTAGCCAAACCAGTTCAAATAGTTAAGACTATATGAACAATTAT
* * * * *
6651066 CTATTTCAAATTGTTATAACCTTTTGGTTTT-TCATAAAATAATTTTTTCTA-TTC
128 CTATTTCAAATAGTTATGACATTTT-ATTTTATCATAAAATAATTTTTTC-AGCTC
* *
6651120 ATACAAGCTTATTTCAAATA
1 TTACAAGCTTATTTGAAATA
6651140 TGTTCACCAA
Statistics
Matches: 979, Mismatches: 218, Indels: 136
0.73 0.16 0.10
Matches are distributed among these distances:
168 9 0.01
169 117 0.12
170 3 0.00
171 3 0.00
172 2 0.00
173 1 0.00
175 4 0.00
176 51 0.05
177 218 0.22
178 37 0.04
179 137 0.14
180 109 0.11
181 275 0.28
182 9 0.01
183 4 0.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.42
Consensus pattern (181 bp):
TTACAAGCTTATTTGAAATAAAATAATACTAATTTAATAATATTTTAAAAATTATTAACTAAGAG
ATTTAAAAAATAAATTTATTAGCCAAACCAGTTCAAATAGTTAAGACTATATGAACAATTATCTA
TTTCAAATAGTTATGACATTTTATTTTATCATAAAATAATTTTTTCAGCTC
Found at i:6650438 original size:358 final size:355
Alignment explanation
Indices: 6649702--6650768 Score: 1124
Period size: 358 Copynumber: 3.0 Consensus size: 355
6649692 AACGGATTTA
* * * * *
6649702 CAAGTTTATTTGAAATAAAATAATACTAATTTATCAATATTTCAAGAA--TTAGTACAAGATTCA
1 CAAGCTTATTTGAAATAAAATAAAACTAATTTATTAATATTTCAA-AATTTTAGTAAAAGATTTA
* * * * * *
6649765 AAAAATAAATCTATTTATCAAA-TAAGTTCAAATAGTTATGACTATTTGAATAGTTATCTATTTC
65 AAAAATAATTTTATTTATCAAACT-AGTTCAAATAATTATAACTATTTGAACAATTATCTATTTC
*
6649829 AAATTGTTATAACCTTTTGTTCTACCATAAAACT-ATTATTTCTATTTATATAATTTATTT-GAA
129 AAATTGTTATAACCTTTTGTTTTACCATAAAA-TAATTATTTCTATTTATA-AATTTATTTAG-A
* *
6649892 ATAAAATAATACTAAATTAATAATATTCTAAAAATTCATAACTAAGAGATTTAAAAAATAAATTT
191 ATAAAATAATACT-AATTAATAATATTTTGAAAATT-ATAACTAAGAGATTTAAAAAATAAATTT
* * * * * * *
6649957 ATTAGTCGAACCAATTCAAATAGTTAAGACTGTATGAATAATTATCTATTTTAAATTA-TTATGA
254 GTTTGCCAAACTAATTCAAATAGTTAAGACTATATGAATAATTATCTATTTCAAA-TAGTTATGA
* * * *
6650021 TATTTTATTTTGTTATAAAATAATTATTTTAGCTCATC
318 CATTTTATTTTATCATAAAACAATTATTTTAGCTCATC
* *
6650059 CAAGTTTATTTGTAATAAAATAAAACTAATTTATTAATATTTCAAAATTTTA-TAAAAGATTTAA
1 CAAGCTTATTTGAAATAAAATAAAACTAATTTATTAATATTTCAAAATTTTAGTAAAAGATTTAA
* * *
6650123 AAAATAATTTTATTTATCAAACTAGTTTAAATAATTATAACTATTTGAACAATTATATATTTCAC
66 AAAATAATTTTATTTATCAAACTAGTTCAAATAATTATAACTATTTGAACAATTATCTATTTCAA
*
6650188 ATTGTTATAACCTTTTGTTTTACCATAAAATAATTATTTCTATTTATACAAGCTTATTTAGAATA
131 ATTGTTATAACCTTTTGTTTTACCATAAAATAATTATTTCTATTTATA-AA-TTTATTTAGAATA
* *
6650253 AAATAATACTAATCTAATAATATTTTGACAATTATTAACTAAGATATTTAAAAAATAAATTTGTT
194 AAATAATACTAAT-TAATAATATTTTGAAAATTA-TAACTAAGAGATTTAAAAAATAAATTTGTT
* * * *
6650318 TGCCAAACTACTTCAAATAGTTAAGGCTATATGAACAATTATCTATATCAAATAGTTATGACATT
257 TGCCAAACTAATTCAAATAGTTAAGACTATATGAATAATTATCTATTTCAAATAGTTATGACATT
* *
6650383 TTATTTTATCGTAAAACAATT-TTTTCAGCTCTTAC
322 TTATTTTATCATAAAACAATTATTTT-AGCTCAT-C
* * ** * *
6650418 TAA-CTTATTTGGAATAAAATAAATTTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATT
1 CAAGCTTATTTGAAATAAAATAAAACTAATTTATTAATATTTC-AAAATT--TTAGTAAAAGATT
* * * * *
6650482 TAAAAAATAATTTT-GTTAGCCAAACCAGTTCAAATAATTATGAA-TGTTTGAACAATAATCTAT
63 TAAAAAATAATTTTATTTA-TCAAACTAGTTCAAATAATTAT-AACTATTTGAACAATTATCTAT
* * ** * * * * *
6650545 TTTAAATTGTTATTACCTTTTGTTTTGTCATAAAATAAATGTCTTTGT-TCCTATAAATTTGTTC
126 TTCAAATTGTTATAACCTTTTGTTTTACCATAAAAT-AAT-TATTTCTAT-TTATAAATTTATTT
* * * * * *
6650609 A-AA-AAAATAATATTAATTTATTAATATCTTGAAAATTAATAAGTAATAGATCTAAAAAATAAA
188 AGAATAAAATAATACTAA-TTAATAATATTTTGAAAATT-ATAACTAAGAGATTTAAAAAATAAA
* * * * * *
6650672 TATGTTTGCTAAACTAGTTCAATTAGTTATA-ACTATTTGAATAATTA-CTTATTTCAAATTGTT
251 TTTGTTTGCCAAACTAATTCAAATAGTTA-AGACTATATGAATAATTATC-TATTTCAAATAGTT
*
6650735 ATGACCA-TTTGTTTTATCATAAAACAATTATTTT
314 ATGA-CATTTTATTTTATCATAAAACAATTATTTT
6650769 TGTTCATACA
Statistics
Matches: 602, Mismatches: 82, Indels: 48
0.82 0.11 0.07
Matches are distributed among these distances:
356 3 0.00
357 163 0.27
358 177 0.29
359 11 0.02
360 122 0.20
361 16 0.03
362 93 0.15
363 8 0.01
364 9 0.01
ACGTcount: A:0.42, C:0.09, G:0.07, T:0.42
Consensus pattern (355 bp):
CAAGCTTATTTGAAATAAAATAAAACTAATTTATTAATATTTCAAAATTTTAGTAAAAGATTTAA
AAAATAATTTTATTTATCAAACTAGTTCAAATAATTATAACTATTTGAACAATTATCTATTTCAA
ATTGTTATAACCTTTTGTTTTACCATAAAATAATTATTTCTATTTATAAATTTATTTAGAATAAA
ATAATACTAATTAATAATATTTTGAAAATTATAACTAAGAGATTTAAAAAATAAATTTGTTTGCC
AAACTAATTCAAATAGTTAAGACTATATGAATAATTATCTATTTCAAATAGTTATGACATTTTAT
TTTATCATAAAACAATTATTTTAGCTCATC
Found at i:6650930 original size:169 final size:169
Alignment explanation
Indices: 6650640--6650978 Score: 402
Period size: 169 Copynumber: 2.0 Consensus size: 169
6650630 TAATATCTTG
* *
6650640 AAAATTAATAAGTAATAGATCTAAAAAATAAATATGTTTGCTAAACTAGTTCAATTAGTTATAAC
1 AAAATTAATAAGTAATAGATCTAAAAAATAAATATGTTGGCTAAACTAGTGCAATTAGTTATAAC
* * * *
6650705 TATTTGAATAATTACTTATTTCAAATTGTTATGACCATTTGTTTTATCATAAAACAATTATTTTT
66 TATTTGAACAATTACTTATTTCAAATCGTTATGACCATTTGTTTTATCACAAAACAATTATTTCT
* *
6650770 GTTCATA-CAGTCTTATTCGGAATAACGTAATGCTAATTT
131 GTTCATACCA-ACTTATTCGGAATAACATAATGCTAATTT
* * * * * *
6650809 AAAATTAATAAGTAATAGATTTAGAAAATATATATGTTGGCCTGATC-AGTGCTAA-TAGTTATG
1 AAAATTAATAAGTAATAGATCTAAAAAATAAATATGTTGG-CTAAACTAGTGC-AATTAGTTATA
* * *
6650872 ACTGTTTGAACAATTA-TCTA-TTCAAAATCGTTATGA-CATTTTGTTTTGTCACAAAACAATTG
64 ACTATTTGAACAATTACT-TATTTC-AAATCGTTATGACCA-TTTGTTTTATCACAAAACAATTA
* * *
6650934 TTTCTGTTTATACCAACTTATTTGGAATAACATAATTCTAATTT
126 TTTCTGTTCATACCAACTTATTCGGAATAACATAATGCTAATTT
6650978 A
1 A
6650979 TTAATATTCC
Statistics
Matches: 144, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
168 6 0.04
169 130 0.90
170 8 0.06
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.41
Consensus pattern (169 bp):
AAAATTAATAAGTAATAGATCTAAAAAATAAATATGTTGGCTAAACTAGTGCAATTAGTTATAAC
TATTTGAACAATTACTTATTTCAAATCGTTATGACCATTTGTTTTATCACAAAACAATTATTTCT
GTTCATACCAACTTATTCGGAATAACATAATGCTAATTT
Found at i:6651248 original size:120 final size:120
Alignment explanation
Indices: 6651032--6651253 Score: 340
Period size: 120 Copynumber: 1.9 Consensus size: 120
6651022 TTTATTGAAC
* *
6651032 AAGTTCAAATAGTTATGGCTATTTGAACAATTATCTATTTCAAATTGTTATAACCTTTTGGTTTT
1 AAGTTCAAACAGTTATGACTATTTGAACAATTATCTATTTCAAATTGTTATAACCTTTTGGTTTT
* *
6651097 TCATAAAATAATTTTTTCTATTCATACAAGCTTATTTCAAATATGTTCACCAAAT
66 TCATAAAACAATTTTTTCTATTCATAAAAGCTTATTTCAAATATGTTCACCAAAT
* * *
6651152 AAGTTCAAACAGTTATGACTATTTGAATAATTATTTATTTCAAATTGTTATGACCTTTT-GTTTT
1 AAGTTCAAACAGTTATGACTATTTGAACAATTATCTATTTCAAATTGTTATAACCTTTTGGTTTT
*
6651216 GTCATAAAACAATTATTTT-TGTTCATAAAAGCTTATTT
66 -TCATAAAACAATT-TTTTCTATTCATAAAAGCTTATTT
6651254 GGATTAAAAT
Statistics
Matches: 92, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
119 5 0.05
120 83 0.90
121 4 0.04
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.45
Consensus pattern (120 bp):
AAGTTCAAACAGTTATGACTATTTGAACAATTATCTATTTCAAATTGTTATAACCTTTTGGTTTT
TCATAAAACAATTTTTTCTATTCATAAAAGCTTATTTCAAATATGTTCACCAAAT
Found at i:6651806 original size:360 final size:353
Alignment explanation
Indices: 6651135--6652295 Score: 1183
Period size: 360 Copynumber: 3.2 Consensus size: 353
6651125 AGCTTATTTC
* * * *
6651135 AAATATGTTCACCAAATAAGTTCAAACAGTTATGACTATTTGAATAATTATTTATTTCAAATTGT
1 AAATCTGTTTACCAAATAAGTTCAAACAGTTATGACTATTTGAACAATTATCTATTTCAAATTGT
* * * * * *
6651200 TATGACCTTTTGTTTTGTCATAAAACAATTATTTTTGTTCATAAAAGCTTATTTGGATTAAAATA
66 TATGACTTTTTGTTTTGTCATAAAATAATTGTTTATGTTCATACAAGCTTATTT-GAATAAAATA
* * *
6651265 ATATTAATTTATTAATATTTCGACAATTAATAAGTGAAAGATTTAAAATATATATATGTTTAT-T
130 ATA-TAATTTATTAATA-TTCCAAAATTAATAAGT-AAAGATTTAAAA-ATAAATATGTTT-TCT
* * * * *
6651329 GAACAAGTTCAAATAGTAATAACTATTTGAATAATTATTTATTTTAAATCGTTATGATCTTTTGT
190 AAACAAGTTCAAATAGTAATGACCATTTGAATAATTATCTATTTCAAATCGTTATGA-CTTTTGT
* * ** * * * **
6651394 TTTGTCA-AAAAAATTGCATCAACTCATATAGGCTTATT-TGAAATAAAATAATACTAGCTTATT
254 TTTGTCATAAACAATTGCTTTTATTCATAAAGGCTTATTCAG-AATAAAATAATACTAATTTATT
*
6651457 AATATTCCAAAAATTAATGAGTAAAAGATTTAAAAAAT
318 AATATTTCAAAAATTAAT-A-TAAAAGATTTAAAAAAT
* * * **
6651495 AAATCTGTTTACCAAATAAGTTAAAATAGTTATGACTATTTGAACAACTATCTATTTCAAATCAT
1 AAATCTGTTTACCAAATAAGTTCAAACAGTTATGACTATTTGAACAATTATCTATTTCAAATTGT
*
6651560 TATGACTTTTTGTTTTGTCATAAAATAATTGTTTATGTTCATACAAGCTTATTTCAACTAAAATA
66 TATGACTTTTTGTTTTGTCATAAAATAATTGTTTATGTTCATACAAGCTTATTTGAA-TAAAATA
* *
6651625 ATATAAATTTATTAATATTCCAAAGATTAATAAGTAAAAATTTAGAAAATAAATTTGTTTTCTAA
130 ATAT-AATTTATTAATATTCCAAA-ATTAATAAGTAAAGATTTA-AAAATAAATATGTTTTCTAA
* * * * *
6651690 ATACA-TTCAAATAGTTATGACCATTTGAAGAATTATCTATTTCAAATCGTTATGACCTTGGTTT
192 ACA-AGTTCAAATAGTAATGACCATTTGAATAATTATCTATTTCAAATCGTTATGACTTTTGTTT
*
6651754 TGTCATAAACTAATTGCTTTTGTTCATAAAGGCTTATTCAGAATAAAATAATACTAATTTATTAA
256 TGTCATAAAC-AATTGCTTTTATTCATAAAGGCTTATTCAGAATAAAATAATACTAATTTATTAA
*
6651819 AATTTCAAAAATTAATAACTAAAAGATTTAAAAAAT
320 TATTTCAAAAATTAAT-A-TAAAAGATTTAAAAAAT
* * ** * * * *
6651855 AAATTTGTTTATCAAACGAGTTCAAACAGTTATGACTATCTAAATAATTATTTATTTCAAATTGT
1 AAATCTGTTTACCAAATAAGTTCAAACAGTTATGACTATTTGAACAATTATCTATTTCAAATTGT
* * * * * * *
6651920 TAT-AATATTTTGTTTTATCATAAAATAATAGTTTCTATTCATACAAGTTTATTTGGAATAAGAT
66 TATGACT-TTTTGTTTTGTCATAAAATAATTGTTTATGTTCATACAAGCTTATTT-GAATAAAAT
* * ** * *
6651984 AATACTAATCTATTAATATTCTAAAAATTAATAAGTTGGAGATTTAAAAAATAAATATGTTTACC
129 AATA-TAATTTATTAATATTC-CAAAATTAATAAG-TAAAGATTT-AAAAATAAATATGTTTTCT
* * * * *
6652049 AAACAAGTTCAAATAGTCATGTCCATTTGAATTATTATCGATTTCAAATCGTTATGACATTTTAT
190 AAACAAGTTCAAATAGTAATGACCATTTGAATAATTATCTATTTCAAATCGTTATGAC-TTTTGT
* ** * *
6652114 TTTGACATAAGACAATTG-TTTCTATTCATATAA-AATTATTCAGAATAAAATAATGCTATTTTA
254 TTTGTCATAA-ACAATTGCTTT-TATTCATA-AAGGCTTATTCAGAATAAAATAATACTAATTTA
** * * *
6652177 TTAATATTTTGAAAATT-A-ATAAGAGATTCAAAAATT
316 TTAATATTTCAAAAATTAATATAAAAGATTTAAAAAAT
**** ** *
6652213 AAATCTGTTTATTGGATCAA-TTCAAATGGTTATAACTATTTGAACAATTATCTATTTCAAATTG
1 AAATCTGTTTACCAAAT-AAGTTCAAACAGTTATGACTATTTGAACAATTATCTATTTCAAATTG
* * *
6652277 GTATGA-TCTTTGGTTTGTC
65 TTATGACTTTTTGTTTTGTC
6652296 GCTTGTATCT
Statistics
Matches: 667, Mismatches: 112, Indels: 47
0.81 0.14 0.06
Matches are distributed among these distances:
357 9 0.01
358 80 0.12
359 81 0.12
360 346 0.52
361 82 0.12
362 65 0.10
363 4 0.01
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.41
Consensus pattern (353 bp):
AAATCTGTTTACCAAATAAGTTCAAACAGTTATGACTATTTGAACAATTATCTATTTCAAATTGT
TATGACTTTTTGTTTTGTCATAAAATAATTGTTTATGTTCATACAAGCTTATTTGAATAAAATAA
TATAATTTATTAATATTCCAAAATTAATAAGTAAAGATTTAAAAATAAATATGTTTTCTAAACAA
GTTCAAATAGTAATGACCATTTGAATAATTATCTATTTCAAATCGTTATGACTTTTGTTTTGTCA
TAAACAATTGCTTTTATTCATAAAGGCTTATTCAGAATAAAATAATACTAATTTATTAATATTTC
AAAAATTAATATAAAAGATTTAAAAAAT
Found at i:6652029 original size:181 final size:181
Alignment explanation
Indices: 6651135--6652292 Score: 1085
Period size: 181 Copynumber: 6.4 Consensus size: 181
6651125 AGCTTATTTC
* * * * * *
6651135 AAATATGTTCACCAAATAAGTTCAAACAGTTATGACTATTTGAATAATTATTTATTTCAAATTGT
1 AAATATGTTTATCAAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCGT
* * * * * * *
6651200 TATGACCTTTTGTTTTGTCATAAAACAATTATTTTTGTTCATAAAAGCTTATTTGGATTAAAATA
66 TATGATCTTTTGTTTTGTCATAAAATAATTGTTTCTATTCATACAAGCTTATTTGGAATAAAATA
* * * * *
6651265 ATATTAATTTATTAATATT-TCGACAATTAATAAGTGAAAGATTTAAAATAT
131 ATACTAATTTATTAATATTCT-AAAAATTAATAAGTTAAAGATTTAAAAAAT
* ** * * * *
6651316 ATATATGTTTATTGAACAAGTTCAAATAGTAATAACTATTTGAATAATTATTTATTTTAAATCGT
1 AAATATGTTTATCAAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCGT
** * * * * *
6651381 TATGATCTTTTGTTTTGTCA-AAAA-AATTGCATCAACTCATATAGGCTTATTTGAAATAAAATA
66 TATGATCTTTTGTTTTGTCATAAAATAATTGTTTCTATTCATACAAGCTTATTTGGAATAAAATA
** * * *
6651444 ATACTAGCTTATTAATATTCCAAAAATTAATGAGTAAAAGATTTAAAAAAT
131 ATACTAATTTATTAATATTCTAAAAATTAATAAGTTAAAGATTTAAAAAAT
* * * * * * *
6651495 AAATCTGTTTACCAAATAAGTTAAAATAGTTATGACTATTTGAACAACTATCTATTTCAAATCAT
1 AAATATGTTTATCAAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCGT
* * *
6651560 TATGA-CTTTTTGTTTTGTCATAAAATAATTGTTTATGTTCATACAAGCTTATTT-CAACTAAAA
66 TATGATC-TTTTGTTTTGTCATAAAATAATTGTTTCTATTCATACAAGCTTATTTGGAA-TAAAA
* * * *
6651623 TAATA-TAAATTTATTAATATTCCAAAGATTAATAAG-TAAAAATTTAGAAAAT
129 TAATACT-AATTTATTAATATTCTAAAAATTAATAAGTTAAAGATTTAAAAAAT
* * * *
6651675 AAATTTGTTT-TCTAAATACA-TTCAAATAGTTATGACCATTTGAAGAATTATCTATTTCAAATC
1 AAATATGTTTATC-AAACA-AGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATC
* * * * **
6651738 GTTATGA-CCTTGGTTTTGTCATAAACTAATTGCTTT-TGTTCATA-AAGGCTTATTCAGAATAA
64 GTTATGATCTTTTGTTTTGTCATAAAATAATTG-TTTCTATTCATACAA-GCTTATTTGGAATAA
* * *
6651800 AATAATACTAATTTATTAAAATT-TCAAAAATTAATAACTAAAAGATTTAAAAAAT
127 AATAATACTAATTTATTAATATTCT-AAAAATTAATAAGTTAAAGATTTAAAAAAT
* * * * * * *
6651855 AAATTTGTTTATCAAACGAGTTCAAACAGTTATGACTATCTAAATAATTATTTATTTCAAATTGT
1 AAATATGTTTATCAAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCGT
* * * * * *
6651920 TATAATATTTTGTTTTATCATAAAATAATAGTTTCTATTCATACAAGTTTATTTGGAATAAGATA
66 TATGATCTTTTGTTTTGTCATAAAATAATTGTTTCTATTCATACAAGCTTATTTGGAATAAAATA
* **
6651985 ATACTAATCTATTAATATTCTAAAAATTAATAAGTTGGAGATTTAAAAAAT
131 ATACTAATTTATTAATATTCTAAAAATTAATAAGTTAAAGATTTAAAAAAT
* * * * * *
6652036 AAATATGTTTACCAAACAAGTTCAAATAGTCATGTCCATTTGAATTATTATCGATTTCAAATCGT
1 AAATATGTTTATCAAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCGT
* * * * * ** **
6652101 TATGA-CATTTTATTTTGACATAAGACAATTGTTTCTATTCATATAAAATTATTCAGAATAAAAT
66 TATGATC-TTTTGTTTTGTCATAAAATAATTGTTTCTATTCATACAAGCTTATTTGGAATAAAAT
* * * * * *
6652165 AATGCTATTTTATTAATATTTTGAAAATTAATAAG----AGATTCAAAAATT
130 AATACTAATTTATTAATATTCTAAAAATTAATAAGTTAAAGATTTAAAAAAT
* ** * * * * *
6652213 AAATCTGTTTATTGGATCAA-TTCAAATGGTTATAACTATTTGAACAATTATCTATTTCAAATTG
1 AAATATGTTTA-TCAAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCG
* *
6652277 GTATGATCTTTGGTTT
65 TTATGATCTTTTGTTT
6652293 GTCGCTTGTA
Statistics
Matches: 795, Mismatches: 159, Indels: 50
0.79 0.16 0.05
Matches are distributed among these distances:
177 67 0.08
178 8 0.01
179 210 0.26
180 161 0.20
181 346 0.44
182 3 0.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (181 bp):
AAATATGTTTATCAAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCGT
TATGATCTTTTGTTTTGTCATAAAATAATTGTTTCTATTCATACAAGCTTATTTGGAATAAAATA
ATACTAATTTATTAATATTCTAAAAATTAATAAGTTAAAGATTTAAAAAAT
Found at i:6661344 original size:11 final size:11
Alignment explanation
Indices: 6661328--6661363 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
6661318 AGATAAAAAA
*
6661328 TTTTTTCTTAT
1 TTTTTTATTAT
6661339 TTTTTTATTAT
1 TTTTTTATTAT
*
6661350 TTTTGTATTAT
1 TTTTTTATTAT
6661361 TTT
1 TTT
6661364 ATAAGATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.14, C:0.03, G:0.03, T:0.81
Consensus pattern (11 bp):
TTTTTTATTAT
Found at i:6663041 original size:15 final size:16
Alignment explanation
Indices: 6662985--6663044 Score: 77
Period size: 16 Copynumber: 3.8 Consensus size: 16
6662975 GCTGGTTTGC
*
6662985 AGGGTATGGGTGATCAG
1 AGGG-ATGGGTGGTCAG
*
6663002 AGGGATGGGTGGTCAA
1 AGGGATGGGTGGTCAG
6663018 AGGGATGGGTGGTC-G
1 AGGGATGGGTGGTCAG
*
6663033 AGGGGTGGGTGG
1 AGGGATGGGTGG
6663045 CCAATGGTGC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
15 11 0.28
16 24 0.62
17 4 0.10
ACGTcount: A:0.18, C:0.05, G:0.57, T:0.20
Consensus pattern (16 bp):
AGGGATGGGTGGTCAG
Found at i:6663113 original size:8 final size:8
Alignment explanation
Indices: 6663102--6663161 Score: 54
Period size: 8 Copynumber: 7.9 Consensus size: 8
6663092 TTTTGTCTAT
6663102 TTTTTGTA
1 TTTTTGTA
6663110 TTTTT-TA
1 TTTTTGTA
6663117 -TTTTGTA
1 TTTTTGTA
**
6663124 -TTTTACA
1 TTTTTGTA
*
6663131 TTTTTGCA
1 TTTTTGTA
*
6663139 TTTTTGCA
1 TTTTTGTA
*
6663147 TTTTTATA
1 TTTTTGTA
6663155 TTTTTGT
1 TTTTTGT
6663162 TTAATTTAAT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
6 4 0.09
7 9 0.20
8 31 0.70
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (8 bp):
TTTTTGTA
Found at i:6663924 original size:2 final size:2
Alignment explanation
Indices: 6663917--6663951 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
6663907 TTTTGTCTTA
6663917 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6663952 AAAGATCAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6665372 original size:27 final size:27
Alignment explanation
Indices: 6665332--6665383 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
6665322 TAAAACCTCG
*
6665332 TATGATATACCTTTTTTTAGCTTCTAA
1 TATGATATACCTTTTTTTAGATTCTAA
* *
6665359 TATGATTTAGCTTTTTTTAGATTCT
1 TATGATATACCTTTTTTTAGATTCT
6665384 GGTATCATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.23, C:0.12, G:0.10, T:0.56
Consensus pattern (27 bp):
TATGATATACCTTTTTTTAGATTCTAA
Found at i:6665393 original size:27 final size:27
Alignment explanation
Indices: 6665342--6665394 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
6665332 TATGATATAC
* *
6665342 CTTTTTTTAGCTTCTAATATGATTTAG
1 CTTTTTTTAGATTCTAATATCATTTAG
**
6665369 CTTTTTTTAGATTCTGGTATCATTTA
1 CTTTTTTTAGATTCTAATATCATTTA
6665395 TAAGAAAATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.21, C:0.11, G:0.11, T:0.57
Consensus pattern (27 bp):
CTTTTTTTAGATTCTAATATCATTTAG
Found at i:6670344 original size:21 final size:22
Alignment explanation
Indices: 6670304--6670349 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
6670294 AATTTTTATT
*
6670304 TTTTATAAATTATTTTAATATAA
1 TTTTATAAATTATTTAAATA-AA
6670327 TTTT-TAAA-TATTTAAATAAA
1 TTTTATAAATTATTTAAATAAA
6670347 TTT
1 TTT
6670350 AGATATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 4 0.18
23 4 0.18
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TTTTATAAATTATTTAAATAAA
Found at i:6671779 original size:19 final size:18
Alignment explanation
Indices: 6671755--6671797 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
6671745 ACCTTTGTAT
6671755 AAAAAATGAAT-TCATATTA
1 AAAAAATGAATGT-A-ATTA
*
6671774 AAAAAATTAATGTAATTA
1 AAAAAATGAATGTAATTA
6671792 AAAAAA
1 AAAAAA
6671798 ATACATACGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 10 0.45
19 11 0.50
20 1 0.05
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (18 bp):
AAAAAATGAATGTAATTA
Found at i:6672040 original size:20 final size:19
Alignment explanation
Indices: 6672007--6672046 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
6671997 TTTAACTATA
6672007 ATTAAATAAAAATATTTTT
1 ATTAAATAAAAATATTTTT
*
6672026 ATTAATATAATAATATTTTT
1 ATTAA-ATAAAAATATTTTT
6672046 A
1 A
6672047 AATCAGAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
ATTAAATAAAAATATTTTT
Found at i:6672770 original size:23 final size:24
Alignment explanation
Indices: 6672734--6672779 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
6672724 TTTTAATAAA
6672734 TTATTTATAAATATAT-TTTATTT
1 TTATTTATAAATATATGTTTATTT
** *
6672757 TTATTTATTTATATTTGTTTATT
1 TTATTTATAAATATATGTTTATT
6672780 AAGATTAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (24 bp):
TTATTTATAAATATATGTTTATTT
Found at i:6672888 original size:11 final size:11
Alignment explanation
Indices: 6672874--6672903 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
6672864 TTTGTTTAAA
*
6672874 ATTTATTTTTT
1 ATTTATTTGTT
6672885 ATTTATTTGTT
1 ATTTATTTGTT
6672896 ATTTATTT
1 ATTTATTT
6672904 ACTGTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (11 bp):
ATTTATTTGTT
Found at i:6672969 original size:20 final size:20
Alignment explanation
Indices: 6672925--6672980 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
6672915 ATAATATTAA
*
6672925 TAAATTTATATT-T-TTATTT
1 TAAATTTAT-TTATATTAATT
6672944 TAAAATTTATTTATATTAATT
1 T-AAATTTATTTATATTAATT
6672965 TAAATTTATTTA-ATTA
1 TAAATTTATTTATATTA
6672981 TAATTTATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
19 7 0.21
20 20 0.61
21 6 0.18
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
TAAATTTATTTATATTAATT
Found at i:6672979 original size:15 final size:15
Alignment explanation
Indices: 6672952--6672995 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
6672942 TTTAAAATTT
6672952 ATTTATATTAATT-TAA
1 ATTTAT-TTAATTAT-A
6672968 ATTTATTTAATTATA
1 ATTTATTTAATTATA
6672983 ATTTATTT-ATTAT
1 ATTTATTTAATTAT
6672996 TCATAAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 5 0.19
15 15 0.56
16 7 0.26
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
ATTTATTTAATTATA
Found at i:6674705 original size:2 final size:2
Alignment explanation
Indices: 6674698--6674733 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
6674688 GACCCTCCCT
6674698 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
6674734 ACATTGAACA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:6675470 original size:15 final size:15
Alignment explanation
Indices: 6675447--6675491 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
6675437 ACTTATAAAT
*
6675447 AATATTATATTAATA
1 AATAATATATTAATA
* *
6675462 AATAATATACTATTA
1 AATAATATATTAATA
6675477 AATAATATATTAATA
1 AATAATATATTAATA
6675492 TATTTGTCAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (15 bp):
AATAATATATTAATA
Found at i:6676246 original size:17 final size:15
Alignment explanation
Indices: 6676209--6676267 Score: 52
Period size: 14 Copynumber: 3.9 Consensus size: 15
6676199 ATTGTGATTA
6676209 TTTTTATTATTT--T
1 TTTTTATTATTTACT
*
6676222 GTTGTTATTATTTACT
1 -TTTTTATTATTTACT
6676238 GTTTATTATTATTT-CT
1 -TTT-TTATTATTTACT
6676254 TTTTTAATTATTTA
1 TTTTT-ATTATTTA
6676268 AAAAATTCTA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 13 0.34
15 10 0.26
16 6 0.16
17 9 0.24
ACGTcount: A:0.20, C:0.03, G:0.05, T:0.71
Consensus pattern (15 bp):
TTTTTATTATTTACT
Found at i:6676375 original size:18 final size:18
Alignment explanation
Indices: 6676352--6676386 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
6676342 AACTTTTTCA
6676352 ATTTTTTTAAAAAAATTC
1 ATTTTTTTAAAAAAATTC
*
6676370 ATTTTTTTATAAAAATT
1 ATTTTTTTAAAAAAATT
6676387 TATTCAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (18 bp):
ATTTTTTTAAAAAAATTC
Found at i:6676420 original size:13 final size:14
Alignment explanation
Indices: 6676402--6676431 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
6676392 AAAATATCAA
6676402 TTATTATTATT-TT
1 TTATTATTATTGTT
6676415 TTATTATTATTGTT
1 TTATTATTATTGTT
6676429 TTA
1 TTA
6676432 CATTGTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.73
Consensus pattern (14 bp):
TTATTATTATTGTT
Found at i:6676899 original size:20 final size:20
Alignment explanation
Indices: 6676868--6676917 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
6676858 CATAAAAACT
*
6676868 AATAAAAAAATCAATA-CAA
1 AATAAAAAAATCAAAATCAA
6676887 AATAAATAAAATCAAAATCAA
1 AATAAA-AAAATCAAAATCAA
6676908 AATAAAAAAA
1 AATAAAAAAA
6676918 AAAAGAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 6 0.21
20 13 0.46
21 9 0.32
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (20 bp):
AATAAAAAAATCAAAATCAA
Found at i:6676914 original size:26 final size:24
Alignment explanation
Indices: 6676874--6676921 Score: 60
Period size: 26 Copynumber: 1.9 Consensus size: 24
6676864 AACTAATAAA
*
6676874 AAAATCAATACAAAATAAATAAAATC
1 AAAATCAAAACAAAA-AAA-AAAATC
*
6676900 AAAATCAAAATAAAAAAAAAAA
1 AAAATCAAAACAAAAAAAAAAA
6676922 GAAAAACCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 4 0.20
25 3 0.15
26 13 0.65
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (24 bp):
AAAATCAAAACAAAAAAAAAAATC
Found at i:6676918 original size:21 final size:20
Alignment explanation
Indices: 6676871--6676918 Score: 69
Period size: 21 Copynumber: 2.4 Consensus size: 20
6676861 AAAAACTAAT
*
6676871 AAAAAAATCAATACAAAATA
1 AAAAAAATCAAAACAAAATA
*
6676891 AATAAAATCAAAATCAAAATA
1 AAAAAAATCAAAA-CAAAATA
6676912 AAAAAAA
1 AAAAAAA
6676919 AAAGAAAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 11 0.46
21 13 0.54
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (20 bp):
AAAAAAATCAAAACAAAATA
Found at i:6678196 original size:81 final size:79
Alignment explanation
Indices: 6678057--6678710 Score: 453
Period size: 81 Copynumber: 8.1 Consensus size: 79
6678047 ATAAGTTATG
* ** * * * *
6678057 AAACTTTAAATTCAAAAAGCTTATCTAACTAGAGGTAATGAAACTTTAAATTTAAAAAGCTCTTT
1 AAACTTTAAATTTAAAAAGCTCCTCTAACCAGAGGCAACGAAACTTTAAATTTAAAAGGCTCTTT
* * *
6678122 TAACTAGAGGTAAC
66 TAACCAAAGGCAAC
* * * * * *
6678136 AAAACTTTAAATGTTAAAAAACTCCTCTGACCAAACGCAATGAAACTTTAAATGTTAAAAGACT-
1 -AAACTTTAAAT-TTAAAAAGCTCCTCTAACCAGAGGCAACGAAACTTTAAAT-TTAAAAGGCTC
* *
6678200 TCTCTAACTAAAGGCAAC
63 T-TTTAACCAAAGGCAAC
* * * ** * * * * *
6678218 TAACTTTAAA-TTCAAAGGCTCCTCTGTCTAGAGACAACG-AACTTTAAATTCAAAAGGCCCATT
1 AAACTTTAAATTTAAAAAGCTCCTCTAACCAGAGGCAACGAAACTTTAAATTTAAAAGGCTCTTT
6678281 TAACCAAAGGCAAC
66 TAACCAAAGGCAAC
* * *
6678295 GAAACTTTAAATTTAAAAAGCTTCTTTGACCAGAGGCAACG-AACTTTAAATTTAAAAGGCT-TT
1 -AAACTTTAAATTTAAAAAGCTCCTCTAACCAGAGGCAACGAAACTTTAAATTTAAAAGGCTCTT
*
6678358 TCTAACCAAAGGCAATA
65 T-TAACCAAAGGCAA-C
* * * * *
6678375 AAATTTTAAATTCAAAAAAGGCT-TTACTAACCAGAGGTAACG-AACTTTAAATTCAAAAGGCTC
1 AAACTTTAAATT-TAAAAA-GCTCCT-CTAACCAGAGGCAACGAAACTTTAAATTTAAAAGGCTC
* * * * *
6678438 CTCTAGCCAAAAGCAATG
63 TTTTAACCAAAGGCAA-C
* * * *
6678456 AAATTTTAAATGTTAAAAAGCTCCTCTATCTAGAGGCAAACAAAACTTTAAATCTTAAAAGGCT-
1 AAACTTTAAAT-TTAAAAAGCTCCTCTAACCAGAGGC-AACGAAACTTTAAAT-TTAAAAGGCTC
* * * *
6678520 TTTCTGACTAGAGGTAAC
63 TTT-TAACCAAAGGCAAC
* * * * *
6678538 AAA-TTTTAATTTAAAAAGCTCCTTATAACCAGAGACAATGAAACTTTAAATGTTAAAAGGCTCA
1 AAACTTTAAATTTAAAAAGCTCC-TCTAACCAGAGGCAACGAAACTTTAAAT-TTAAAAGGCTCT
* ** *
6678602 TTTGATTAGAGGCAAC
64 TTTAACCAAAGGCAAC
* * * * * *
6678618 GAACTTTAAATGTTAAAAAGCTCCTTTAACTAGAGGCAACGAAATTTTAAATGTTAAAAGACTCC
1 AAACTTTAAAT-TTAAAAAGCTCCTCTAACCAGAGGCAACGAAACTTTAAAT-TTAAAAGGCTCT
* * *
6678683 TCTAACCAGAGGCAATG
64 TTTAACCAAAGGCAA-C
6678700 AAACTTTAAAT
1 AAACTTTAAAT
6678711 GGCTCCTCTG
Statistics
Matches: 455, Mismatches: 96, Indels: 44
0.76 0.16 0.07
Matches are distributed among these distances:
77 21 0.05
78 21 0.05
79 84 0.18
80 78 0.17
81 176 0.39
82 59 0.13
83 16 0.04
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.28
Consensus pattern (79 bp):
AAACTTTAAATTTAAAAAGCTCCTCTAACCAGAGGCAACGAAACTTTAAATTTAAAAGGCTCTTT
TAACCAAAGGCAAC
Found at i:6678295 original size:39 final size:38
Alignment explanation
Indices: 6678204--6678453 Score: 162
Period size: 39 Copynumber: 6.3 Consensus size: 38
6678194 AAGACTTCTC
* * *
6678204 TAACTAAAGGCAACTAACTTTAAATTC-AAAGGCTCCTC
1 TAACCAAAGGCAACGAACTTTAAATTCAAAAGGC-CCTT
** * * *
6678242 TGTCTAGAGACAACGAACTTTAAATTCAAAAGGCCCATT
1 TAACCAAAGGCAACGAACTTTAAATTCAAAAGGCCC-TT
* * *
6678281 TAACCAAAGGCAACGAAACTTTAAATTTAAAAAGCTTCTT
1 TAACCAAAGGCAACG-AACTTTAAATTCAAAAGGC-CCTT
* * * **
6678321 TGACCAGAGGCAACGAACTTTAAATTTAAAAGGCTTTT
1 TAACCAAAGGCAACGAACTTTAAATTCAAAAGGCCCTT
** * *
6678359 CTAACCAAAGGCAATAAAATTTTAAATTCAAAAAAGG-CTTT
1 -TAACCAAAGGCAA-CGAACTTTAAATTC--AAAAGGCCCTT
* * *
6678400 ACTAACCAGAGGTAACGAACTTTAAATTCAAAAGGCTCCTC
1 --TAACCAAAGGCAACGAACTTTAAATTCAAAAGGC-CCTT
* *
6678441 TAGCCAAAAGCAA
1 TAACCAAAGGCAA
6678454 TGAAATTTTA
Statistics
Matches: 165, Mismatches: 36, Indels: 21
0.74 0.16 0.09
Matches are distributed among these distances:
38 27 0.16
39 61 0.37
40 42 0.25
41 17 0.10
42 18 0.11
ACGTcount: A:0.42, C:0.20, G:0.13, T:0.25
Consensus pattern (38 bp):
TAACCAAAGGCAACGAACTTTAAATTCAAAAGGCCCTT
Found at i:6678436 original size:199 final size:199
Alignment explanation
Indices: 6678058--6678710 Score: 454
Period size: 203 Copynumber: 3.3 Consensus size: 199
6678048 TAAGTTATGA
** * * * *
6678058 AACTTTAAATTCAAAAAGCTTATCTAACTAGAGGTAATGAAACTTTAAATTTAAAAAGCTCTTTT
1 AACTTTAAATTCAAAAAGCCCATCTAACCAAAGGCAACGAAACTTTAAATTTAAAAAGCTCTTTT
* * * *
6678123 AACTAGAGGTAACAAAACTTTAAATGTTAAAAAACTCCTCTGACCAAACGCAATGAAACTTTAAA
66 AACCAGAGGCAACAAAACTTTAAATGTTAAAAAACTCCTCTAACCAAACGCAATAAAACTTTAAA
* * *
6678188 TGTTAAAAGACTTCTCTAACTAAAGGCAACTAACTTTAAATTCAAAGGCTCCTCTGTCTAGAGAC
131 TGTAAAAAGACTTCTCTAACCAAAGGCAACGAACTTTAAATTCAAAGGCTCCTCTGTCTAGAGAC
6678253 AACG
196 AACG
* *
6678257 AACTTTAAATTCAAAAGGCCCATTTAACCAAAGGCAACGAAACTTTAAATTTAAAAAGCT-TCTT
1 AACTTTAAATTCAAAAAGCCCATCTAACCAAAGGCAACGAAACTTTAAATTTAAAAAGCTCT-TT
* * ** ** * *
6678321 TGACCAGAGGCAAC-GAACTTTAAAT-TTAAAAGGCTTTTCTAACCAAAGGCAATAAAATTTTAA
65 TAACCAGAGGCAACAAAACTTTAAATGTTAAAAAACTCCTCTAACCAAACGCAATAAAACTTTAA
* * * * *
6678384 AT-TCAAAAAAGGCTT-TACTAACCAGAGGTAACGAACTTTAAATTCAAAAGGCTCCTCTAGCCA
130 ATGT--AAAAAGACTTCT-CTAACCAAAGGCAACGAACTTTAAATTC-AAAGGCTCCTCT-GTCT
* *
6678447 AAAG-CAATG
190 AGAGACAACG
* * * * * * *
6678456 AAATTTTAAATGTTAAAAAGCTCC-TCTATCTAGAGGCAAACAAAACTTTAAATCTTAAAAGGCT
1 -AACTTTAAAT-TCAAAAAGC-CCATCTAACCAAAGGC-AACGAAACTTTAAAT-TTAAAAAGCT
* * * * * * * *
6678520 -TTTCTGACTAGAGGTAAC-AAA-TTTTAAT-TTAAAAAGCTCCTTATAACCAGA-GACAATGAA
61 CTTT-TAACCAGAGGCAACAAAACTTTAAATGTTAAAAAACTCC-TCTAACCAAACG-CAATAAA
* * * * ** * * * *
6678580 ACTTTAAATGTTAAAAGGC-TCATTTGATTAGAGGCAACGAACTTTAAATGTTAAAAAGCTCCTT
123 ACTTTAAATGTAAAAAGACTTC-TCTAACCAAAGGCAACGAACTTTAAA--TTCAAAGGCTCCTC
** *
6678644 TAACTAGAGGCAACG
185 TGTCTAGAGACAACG
* * * *
6678659 AAATTTTAAATGT-TAAAAGACTCC-TCTAACCAGAGGCAATGAAACTTTAAAT
1 -AACTTTAAAT-TCAAAAAG-C-CCATCTAACCAAAGGCAACGAAACTTTAAAT
6678711 GGCTCCTCTG
Statistics
Matches: 364, Mismatches: 69, Indels: 39
0.77 0.15 0.08
Matches are distributed among these distances:
196 1 0.00
197 33 0.09
198 43 0.12
199 81 0.22
200 14 0.04
201 17 0.05
202 83 0.23
203 89 0.24
204 3 0.01
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.28
Consensus pattern (199 bp):
AACTTTAAATTCAAAAAGCCCATCTAACCAAAGGCAACGAAACTTTAAATTTAAAAAGCTCTTTT
AACCAGAGGCAACAAAACTTTAAATGTTAAAAAACTCCTCTAACCAAACGCAATAAAACTTTAAA
TGTAAAAAGACTTCTCTAACCAAAGGCAACGAACTTTAAATTCAAAGGCTCCTCTGTCTAGAGAC
AACG
Found at i:6678516 original size:41 final size:41
Alignment explanation
Indices: 6678056--6678711 Score: 347
Period size: 40 Copynumber: 16.3 Consensus size: 41
6678046 CATAAGTTAT
* ** * * *
6678056 GAAACTTTAAAT-TCAAAAAGCTTATCTAACTAGAGGTAAT
1 GAAACTTTAAATGTTAAAAAGCTCCTCTATCTAGAGGCAAC
* * * *
6678096 GAAACTTTAAAT-TTAAAAAGCTCTTTTAACTAGAGGTAAC
1 GAAACTTTAAATGTTAAAAAGCTCCTCTATCTAGAGGCAAC
* * * * * *
6678136 AAAACTTTAAATGTTAAAAAACTCCTCTGA-CCAAACGCAAT
1 GAAACTTTAAATGTTAAAAAGCTCCTCT-ATCTAGAGGCAAC
* * *
6678177 GAAACTTTAAATGTT-AAAAGACTTCTCTAACTAAAGGCAAC
1 GAAACTTTAAATGTTAAAAAG-CTCCTCTATCTAGAGGCAAC
* * * * *
6678218 -TAACTTTAAA--TTCAAAGGCTCCTCTGTCTAGAGACAAC
1 GAAACTTTAAATGTTAAAAAGCTCCTCTATCTAGAGGCAAC
* * * * * *
6678256 G-AACTTTAAAT-TCAAAAGGC-CCATTTAACCAAAGGCAAC
1 GAAACTTTAAATGTTAAAAAGCTCC-TCTATCTAGAGGCAAC
* * *
6678295 GAAACTTTAAAT-TTAAAAAGCTTCTTTGA-CCAGAGGCAAC
1 GAAACTTTAAATGTTAAAAAGCTCCTCT-ATCTAGAGGCAAC
* ** * * * *
6678335 G-AACTTTAAAT-TTAAAAGGCTTTTCTAACCAAAGGCAAT
1 GAAACTTTAAATGTTAAAAAGCTCCTCTATCTAGAGGCAAC
* * * * * * *
6678374 AAAATTTTAAAT-TCAAAAAAGGCT-TTACTAACCAGAGGTAAC
1 GAAACTTTAAATGT-TAAAAA-GCTCCT-CTATCTAGAGGCAAC
* * * * * * *
6678416 G-AACTTTAAAT-TCAAAAGGCTCCTCTAGCCAAAAGCAAT
1 GAAACTTTAAATGTTAAAAAGCTCCTCTATCTAGAGGCAAC
*
6678455 GAAATTTTAAATGTTAAAAAGCTCCTCTATCTAGAGGCAAAC
1 GAAACTTTAAATGTTAAAAAGCTCCTCTATCTAGAGGC-AAC
* * * ** *
6678497 AAAACTTTAAATCTTAAAAGGCTTTTCTGA-CTAGAGGTAAC
1 GAAACTTTAAATGTTAAAAAGCTCCTCT-ATCTAGAGGCAAC
* * * *
6678538 -AAA-TTTTAAT-TTAAAAAGCTCCT-TATAACCAGAGACAAT
1 GAAACTTTAAATGTTAAAAAGCTCCTCTAT--CTAGAGGCAAC
* * *
6678577 GAAACTTTAAATGTTAAAAGGCTCATTTGAT-TAGAGGCAAC
1 GAAACTTTAAATGTTAAAAAGCTCCTCT-ATCTAGAGGCAAC
* *
6678618 G-AACTTTAAATGTTAAAAAGCTCCTTTAACTAGAGGCAAC
1 GAAACTTTAAATGTTAAAAAGCTCCTCTATCTAGAGGCAAC
* * * *
6678658 GAAATTTTAAATGTT-AAAAGACTCCTCTAACCAGAGGCAAT
1 GAAACTTTAAATGTTAAAAAG-CTCCTCTATCTAGAGGCAAC
6678699 GAAACTTTAAATG
1 GAAACTTTAAATG
6678712 GCTCCTCTGA
Statistics
Matches: 486, Mismatches: 98, Indels: 63
0.75 0.15 0.10
Matches are distributed among these distances:
36 1 0.00
37 1 0.00
38 39 0.08
39 81 0.17
40 161 0.33
41 141 0.29
42 58 0.12
43 2 0.00
44 2 0.00
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.28
Consensus pattern (41 bp):
GAAACTTTAAATGTTAAAAAGCTCCTCTATCTAGAGGCAAC
Found at i:6678518 original size:122 final size:119
Alignment explanation
Indices: 6678093--6678711 Score: 339
Period size: 122 Copynumber: 5.1 Consensus size: 119
6678083 AACTAGAGGT
* * * * * * **
6678093 AATGAAACTTTAAAT-TTAAAAAGCTCTTTTAACTAGAGGTAACAAAACTTTAAATGTTAAAAAA
1 AATGAAACTTTAAATGTTAAAAAGCTCATCTGATTAGAGGCAAC-AAACTTTAAATCTTAAAAGG
* * * * * * * * * * *
6678157 CTCCTCTGACCAAACGCAATGAAACTTTAAATGTTAAAAGACTTCTCTAACTAAAGGC
65 CT-TTCTAACTAGAGGTAACGAAA-TTTAAAT-TTAAAAGGCTCCTCTAACCAAAAGC
* * * * * *
6678215 AACT--AACTTTAAA--TTCAAAGGCTCCTCTG-TCTAGAGACAACGAACTTTAAAT-TCAAAAG
1 AA-TGAAACTTTAAATGTTAAAAAGCTCATCTGAT-TAGAGGCAACAAACTTTAAATCTTAAAAG
* * * * * * * * * *
6678274 GCCCATT-TAACCAAAGGCAACGAAACTTTAAATTTAAAAAGCTTCTTTGACCAGAGGC
64 G--CTTTCTAACTAGAGGTAACGAAA-TTTAAATTTAAAAGGCTCCTCTAACCAAAAGC
* * ** * ** * * * **
6678332 AACG-AACTTTAAAT-TTAAAAGGCTTTTCTAACCAAAGGCAATAAAATTTTAAATTCAAAAAAG
1 AATGAAACTTTAAATGTTAAAAAGCTCATCTGATTAGAGGCAA-CAAACTTTAAA-TCTTAAAAG
* * * *
6678395 GCTTTACTAACCAGAGGTAACGAACTTTAAATTCAAAAGGCTCCTCTAGCCAAAAGC
64 GCTTT-CTAACTAGAGGTAACGAAATTTAAATTTAAAAGGCTCCTCTAACCAAAAGC
* *
6678452 AATGAAATTTTAAATGTTAAAAAGCTCCTCT-ATCTAGAGGCAAACAAAACTTTAAATCTTAAAA
1 AATGAAACTTTAAATGTTAAAAAGCTCATCTGAT-TAGAGGC-AAC-AAACTTTAAATCTTAAAA
* * * * *
6678516 GGCTTTTCTGACTAGAGGTAAC-AAATTTTAATTTAAAAAGCTCCTTATAACC-AGAGAC
63 GGC-TTTCTAACTAGAGGTAACGAAATTTAAATTTAAAAGGCTCC-TCTAACCAAAAG-C
* * * * *
6678574 AATGAAACTTTAAATGTTAAAAGGCTCATTTGATTAGAGGCAACGAACTTTAAATGTTAAAAAGC
1 AATGAAACTTTAAATGTTAAAAAGCTCATCTGATTAGAGGCAACAAACTTTAAATCTTAAAAGGC
* * * *
6678639 TCCTT-TAACTAGAGGCAACGAAATTTTAAATGTTAAAAGACTCCTCTAACCAGAGGC
66 T--TTCTAACTAGAGGTAACGAAA-TTTAAAT-TTAAAAGGCTCCTCTAACCAAAAGC
6678696 AATGAAACTTTAAATG
1 AATGAAACTTTAAATG
6678712 GCTCCTCTGA
Statistics
Matches: 384, Mismatches: 86, Indels: 54
0.73 0.16 0.10
Matches are distributed among these distances:
117 30 0.08
118 46 0.12
119 23 0.06
120 78 0.20
121 69 0.18
122 110 0.29
123 28 0.07
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.28
Consensus pattern (119 bp):
AATGAAACTTTAAATGTTAAAAAGCTCATCTGATTAGAGGCAACAAACTTTAAATCTTAAAAGGC
TTTCTAACTAGAGGTAACGAAATTTAAATTTAAAAGGCTCCTCTAACCAAAAGC
Found at i:6690947 original size:14 final size:12
Alignment explanation
Indices: 6690895--6690964 Score: 54
Period size: 14 Copynumber: 5.4 Consensus size: 12
6690885 GATTTAATTA
6690895 ATTTATTTTATT
1 ATTTATTTTATT
6690907 -TGATTATTTTTATT
1 AT--TTA-TTTTATT
*
6690921 ATTTTGTTGTTATT
1 A-TTTATT-TTATT
6690935 ATTTACTGTTTATT
1 ATTTA-T-TTTATT
6690949 ATTT-TTTTATT
1 ATTTATTTTATT
6690960 ATTTA
1 ATTTA
6690965 AAAATTTTTA
Statistics
Matches: 47, Mismatches: 2, Indels: 18
0.70 0.03 0.27
Matches are distributed among these distances:
11 11 0.23
12 1 0.02
13 8 0.17
14 25 0.53
15 1 0.02
16 1 0.02
ACGTcount: A:0.21, C:0.01, G:0.06, T:0.71
Consensus pattern (12 bp):
ATTTATTTTATT
Found at i:6691333 original size:18 final size:18
Alignment explanation
Indices: 6691293--6691333 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
6691283 TCATTTAAAT
*
6691293 AATTTATCATTTTTATTT
1 AATTTATCATTTTTATTA
*
6691311 TATTTATCATTTTTATTA
1 AATTTATCATTTTTATTA
6691329 AATTT
1 AATTT
6691334 TATTTTTTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (18 bp):
AATTTATCATTTTTATTA
Found at i:6691486 original size:5 final size:5
Alignment explanation
Indices: 6691476--6691514 Score: 55
Period size: 5 Copynumber: 8.0 Consensus size: 5
6691466 TTTAGGTCAA
6691476 TATTT TATTT TATTT TAGTTT TATTT TA-TT TA-TT TATTT
1 TATTT TATTT TATTT TA-TTT TATTT TATTT TATTT TATTT
6691515 ATGAAAGAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 8 0.25
5 19 0.59
6 5 0.16
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.77
Consensus pattern (5 bp):
TATTT
Found at i:6691499 original size:11 final size:10
Alignment explanation
Indices: 6691476--6691514 Score: 55
Period size: 11 Copynumber: 4.0 Consensus size: 10
6691466 TTTAGGTCAA
6691476 TATTTTATTT
1 TATTTTATTT
6691486 TATTTTAGTTT
1 TATTTTA-TTT
6691497 TATTTTA-TT
1 TATTTTATTT
6691506 TA-TTTATTT
1 TATTTTATTT
6691515 ATGAAAGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
8 4 0.15
9 6 0.22
10 7 0.26
11 10 0.37
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.77
Consensus pattern (10 bp):
TATTTTATTT
Found at i:6692132 original size:23 final size:27
Alignment explanation
Indices: 6692104--6692159 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 27
6692094 TTAAAGGGTC
6692104 TTTTTTGTTT-T-TGAGTTT-TT-TTT
1 TTTTTTGTTTATGTGAGTTTCTTGTTT
*
6692127 TTTTTTGTTTATGTGTGTTTCTTGTTT
1 TTTTTTGTTTATGTGAGTTTCTTGTTT
6692154 TTTTTT
1 TTTTTT
6692160 TTCTTTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
23 10 0.36
24 1 0.04
25 6 0.21
26 2 0.07
27 9 0.32
ACGTcount: A:0.04, C:0.02, G:0.14, T:0.80
Consensus pattern (27 bp):
TTTTTTGTTTATGTGAGTTTCTTGTTT
Found at i:6694322 original size:22 final size:23
Alignment explanation
Indices: 6694276--6694330 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 23
6694266 ATGATAAAAA
6694276 TTTATATAAAAATTAATTATGAAT
1 TTTATATAAAAATTAATTA-GAAT
6694300 TTTATATAAAATATTAA-TA-AAT
1 TTTATATAAAA-ATTAATTAGAAT
6694322 TTTATATAA
1 TTTATATAA
6694331 TTTTAAATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
22 12 0.40
24 13 0.43
25 5 0.17
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (23 bp):
TTTATATAAAAATTAATTAGAAT
Found at i:6694336 original size:20 final size:21
Alignment explanation
Indices: 6694276--6694330 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 21
6694266 ATGATAAAAA
*
6694276 TTTATATAAAAATTAATTATGAAT
1 TTTATATAAATATTAA-TA--AAT
6694300 TTTATATAAAATATTAATAAAT
1 TTTATAT-AAATATTAATAAAT
6694322 TTTATATAA
1 TTTATATAA
6694331 TTTTAAATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 2 0.07
22 10 0.34
24 9 0.31
25 8 0.28
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (21 bp):
TTTATATAAATATTAATAAAT
Found at i:6694785 original size:8 final size:8
Alignment explanation
Indices: 6694765--6694809 Score: 56
Period size: 8 Copynumber: 5.8 Consensus size: 8
6694755 TATTATTTTT
6694765 TAAA-ATA
1 TAAATATA
*
6694772 TAAATATT
1 TAAATATA
6694780 TAAATATA
1 TAAATATA
*
6694788 TAATTATA
1 TAAATATA
*
6694796 AAAATATA
1 TAAATATA
6694804 TAAATA
1 TAAATA
6694810 AAAAATTAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
7 4 0.13
8 27 0.87
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
TAAATATA
Found at i:6694810 original size:14 final size:15
Alignment explanation
Indices: 6694766--6694825 Score: 56
Period size: 14 Copynumber: 4.2 Consensus size: 15
6694756 ATTATTTTTT
*
6694766 AAAATATA-AATATT
1 AAAATATATAATATA
*
6694780 TAAATATATAATTATA
1 AAAATATATAA-TATA
6694796 AAAATATATAA-ATA
1 AAAATATATAATATA
*
6694810 AAAA-AT-TAATTTA
1 AAAATATATAATATA
6694823 AAA
1 AAA
6694826 TTTTATTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
12 3 0.08
13 7 0.18
14 14 0.36
15 2 0.05
16 13 0.33
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
AAAATATATAATATA
Found at i:6694814 original size:16 final size:16
Alignment explanation
Indices: 6694781--6694814 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
6694771 ATAAATATTT
* *
6694781 AAATATATAATTATAA
1 AAATATATAAATAAAA
6694797 AAATATATAAATAAAA
1 AAATATATAAATAAAA
6694813 AA
1 AA
6694815 TTAATTTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AAATATATAAATAAAA
Found at i:6697508 original size:15 final size:15
Alignment explanation
Indices: 6697490--6697524 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
6697480 CTTTTACAAT
6697490 TTTTACTTTTAGTTA
1 TTTTACTTTTAGTTA
*
6697505 TTTTACTTTTATTTA
1 TTTTACTTTTAGTTA
6697520 TTTTA
1 TTTTA
6697525 TCTCATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.20, C:0.06, G:0.03, T:0.71
Consensus pattern (15 bp):
TTTTACTTTTAGTTA
Found at i:6698373 original size:21 final size:19
Alignment explanation
Indices: 6698347--6698390 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
6698337 TTAAAGAAAT
*
6698347 AAAAAACCTAGAAAATTAAA
1 AAAAAAACTA-AAAATTAAA
*
6698367 GAAAAAAATTAAAAATTAAA
1 -AAAAAAACTAAAAATTAAA
6698387 AAAA
1 AAAA
6698391 TTTTAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 4 0.19
20 9 0.43
21 8 0.38
ACGTcount: A:0.75, C:0.05, G:0.05, T:0.16
Consensus pattern (19 bp):
AAAAAAACTAAAAATTAAA
Found at i:6698895 original size:21 final size:22
Alignment explanation
Indices: 6698871--6698926 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 22
6698861 AAATAATTAT
6698871 TATATATATAATC-TATTTAAA
1 TATATATATAATCTTATTTAAA
*
6698892 TATATATATTAAAATCTTGTTTAAA
1 TATATATA-T--AATCTTATTTAAA
6698917 TA-ATATATAA
1 TATATATATAA
6698927 AAAAATAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
21 10 0.33
22 1 0.03
23 1 0.03
24 9 0.30
25 9 0.30
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (22 bp):
TATATATATAATCTTATTTAAA
Found at i:6702359 original size:7 final size:7
Alignment explanation
Indices: 6702324--6702414 Score: 61
Period size: 7 Copynumber: 13.6 Consensus size: 7
6702314 AGGTTAGTTT
6702324 TTTAGG-
1 TTTAGGA
6702330 TTTA-GA
1 TTTAGGA
* *
6702336 TTTAAGC
1 TTTAGGA
*
6702343 TTTGGGA
1 TTTAGGA
6702350 TTTAGGA
1 TTTAGGA
6702357 TTT-GGA
1 TTTAGGA
*
6702363 TTTAGGG
1 TTTAGGA
6702370 TTTAAGG-
1 TTT-AGGA
*
6702377 TTTAGGG
1 TTTAGGA
6702384 TTTA-GA
1 TTTAGGA
6702390 TTTAGGGA
1 TTTA-GGA
6702398 TTTGAGG-
1 TTT-AGGA
6702405 TTT-GGA
1 TTTAGGA
6702411 TTTA
1 TTTA
6702415 TGGTTTGATA
Statistics
Matches: 68, Mismatches: 7, Indels: 19
0.72 0.07 0.20
Matches are distributed among these distances:
5 3 0.04
6 25 0.37
7 29 0.43
8 10 0.15
9 1 0.01
ACGTcount: A:0.22, C:0.01, G:0.31, T:0.46
Consensus pattern (7 bp):
TTTAGGA
Found at i:6702380 original size:27 final size:28
Alignment explanation
Indices: 6702350--6702414 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 28
6702340 AGCTTTGGGA
*
6702350 TTTAGGATTTGGATTTAGGG-TTTAAGG
1 TTTAGGATTTAGATTTAGGGATTTAAGG
* *
6702377 TTTAGGGTTTAGATTTAGGGATTTGAGG
1 TTTAGGATTTAGATTTAGGGATTTAAGG
6702405 TTT-GGATTTA
1 TTTAGGATTTA
6702415 TGGTTTGATA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 24 0.73
28 9 0.27
ACGTcount: A:0.22, C:0.00, G:0.32, T:0.46
Consensus pattern (28 bp):
TTTAGGATTTAGATTTAGGGATTTAAGG
Found at i:6702406 original size:21 final size:20
Alignment explanation
Indices: 6702382--6702422 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
6702372 TAAGGTTTAG
6702382 GGTTTAGATTTAGGGATTTGA
1 GGTTTAGATTTAGGG-TTTGA
* *
6702403 GGTTTGGATTTATGGTTTGA
1 GGTTTAGATTTAGGGTTTGA
6702423 TAGGAGATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.00, G:0.34, T:0.46
Consensus pattern (20 bp):
GGTTTAGATTTAGGGTTTGA
Found at i:6704162 original size:18 final size:18
Alignment explanation
Indices: 6704144--6704177 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
6704134 AAGATTTTCA
6704144 AAAT-TTTTAAAATCATC
1 AAATATTTTAAAATCATC
6704161 AAATATTTTAAAATCAT
1 AAATATTTTAAAATCAT
6704178 GAACTGGAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (18 bp):
AAATATTTTAAAATCATC
Found at i:6706012 original size:21 final size:23
Alignment explanation
Indices: 6705962--6706010 Score: 68
Period size: 22 Copynumber: 2.2 Consensus size: 23
6705952 AAAATATATT
6705962 AATTTTA-ATTAATTTAAAATAA
1 AATTTTATATTAATTTAAAATAA
6705984 AATTTTATATT-ATTTAATAA-AA
1 AATTTTATATTAATTTAA-AATAA
6706006 AATTT
1 AATTT
6706011 ATTTACTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 20 0.80
23 5 0.20
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
AATTTTATATTAATTTAAAATAA
Found at i:6725179 original size:19 final size:19
Alignment explanation
Indices: 6725151--6725187 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
6725141 TTCTTTTCTT
* *
6725151 AAAATGGAAATAAAAATAA
1 AAAATAGAAACAAAAATAA
6725170 AAAATAGAAACAAAAATA
1 AAAATAGAAACAAAAATA
6725188 TTTTCTTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.76, C:0.03, G:0.08, T:0.14
Consensus pattern (19 bp):
AAAATAGAAACAAAAATAA
Found at i:6728385 original size:3 final size:3
Alignment explanation
Indices: 6728377--6728584 Score: 205
Period size: 3 Copynumber: 70.3 Consensus size: 3
6728367 TTTTTATGTA
* * * * * *
6728377 TAT TAT TAT TAT TAC TAT TAC TAT TAT TTT TGT TAT TAG TAT TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
6728425 TAT TAT TAT TATT TAT TAT TAT TAT TAT TAT TAT TAT TAT TGT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
6728471 TAT TAT TAC TAG TAT TA- TAT TAC TA- TAT TAT AAT ATAT TA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT
*
6728514 TA- TAT TAAT TA- TAT TA- TGT TA- TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
6728556 TAT TAT TAT TAT CAAT TAT TAT TTT TAT T
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT T
6728585 TTTCTTTCCT
Statistics
Matches: 169, Mismatches: 25, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
2 13 0.08
3 146 0.86
4 10 0.06
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:6729368 original size:5 final size:5
Alignment explanation
Indices: 6729349--6729438 Score: 69
Period size: 5 Copynumber: 17.6 Consensus size: 5
6729339 TCGATCGTAA
* * *
6729349 ATTTT TTTTT CATTTT ATTTT -TATTT -TTTG ATTTT ATTTT ATTTT AAGTTT
1 ATTTT ATTTT -ATTTT ATTTT AT-TTT ATTTT ATTTT ATTTT ATTTT -ATTTT
* *
6729400 -TTTT AGTTT ATTTT ATTTT CATTTTT ATTTT ATGTT ATT
1 ATTTT ATTTT ATTTT ATTTT -A-TTTT ATTTT ATTTT ATT
6729439 GATTTTTTTC
Statistics
Matches: 68, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
4 6 0.09
5 48 0.71
6 10 0.15
7 4 0.06
ACGTcount: A:0.18, C:0.02, G:0.04, T:0.76
Consensus pattern (5 bp):
ATTTT
Found at i:6729377 original size:19 final size:18
Alignment explanation
Indices: 6729353--6729393 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
6729343 TCGTAAATTT
6729353 TTTTTTCATTTTATTTTTA
1 TTTTTTCATTTTA-TTTTA
*
6729372 TTTTTTGATTTTATTTTA
1 TTTTTTCATTTTATTTTA
6729390 TTTT
1 TTTT
6729394 AAGTTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.80
Consensus pattern (18 bp):
TTTTTTCATTTTATTTTA
Found at i:6729400 original size:25 final size:23
Alignment explanation
Indices: 6729348--6729438 Score: 96
Period size: 22 Copynumber: 3.9 Consensus size: 23
6729338 CTCGATCGTA
*
6729348 AATTTTTT-TTTCATTTTATTTT
1 AATTTTTTATTTTATTTTATTTT
*
6729370 TATTTTTTGATTTTATTTTATTTT
1 AATTTTTT-ATTTTATTTTATTTT
*
6729394 AAGTTTTTTTAGTTTATTTTATTTT
1 AA--TTTTTTATTTTATTTTATTTT
* *
6729419 CA-TTTTTATTTTATGTTATT
1 AATTTTTTATTTTATTTTATT
6729439 GATTTTTTTC
Statistics
Matches: 58, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
22 23 0.40
24 14 0.24
25 15 0.26
26 6 0.10
ACGTcount: A:0.19, C:0.02, G:0.04, T:0.75
Consensus pattern (23 bp):
AATTTTTTATTTTATTTTATTTT
Found at i:6741539 original size:3 final size:3
Alignment explanation
Indices: 6741531--6741717 Score: 118
Period size: 3 Copynumber: 67.7 Consensus size: 3
6741521 TTTTTATGTA
* * *
6741531 TAT TAT TAT TAT TAC TAT TAC TAT TAT TAT TAT T-T T-T TGT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
6741577 TAT TAC TAT TAT T-T T-T TAT CAT TAT TAT TAT TAT TGT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
** * * * * *
6741623 TGC TAG TAT TA- TAT TAC TA- TAG TA- TAG TA- TAG TA- TAT TA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
6741665 T-G TAT TA- TAT TA- TGT TA- TAT TA- TAT TA- TAT CAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
6741707 TAT TAT TAT TA
1 TAT TAT TAT TA
6741718 CCACCTTTAT
Statistics
Matches: 147, Mismatches: 23, Indels: 28
0.74 0.12 0.14
Matches are distributed among these distances:
2 30 0.20
3 117 0.80
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:6741580 original size:25 final size:25
Alignment explanation
Indices: 6741531--6741611 Score: 101
Period size: 25 Copynumber: 3.3 Consensus size: 25
6741521 TTTTTATGTA
* * *
6741531 TATTATTA-TTATTACTATTACTAT
1 TATTATTATTTTTTATTATTATTAT
*
6741555 TATTATTATTTTTTGTTATTATTAT
1 TATTATTATTTTTTATTATTATTAT
* *
6741580 TACTATTATTTTTTATCATTATTAT
1 TATTATTATTTTTTATTATTATTAT
6741605 TATTATT
1 TATTATT
6741612 GTTATTATTA
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
24 8 0.17
25 40 0.83
ACGTcount: A:0.28, C:0.05, G:0.01, T:0.65
Consensus pattern (25 bp):
TATTATTATTTTTTATTATTATTAT
Found at i:6741581 original size:31 final size:31
Alignment explanation
Indices: 6741524--6741623 Score: 98
Period size: 31 Copynumber: 3.3 Consensus size: 31
6741514 TGTCGATTTT
* *
6741524 TTATGTATATTATTATTATTACTATTACTATTA
1 TTAT-TAT-TTATCATTATTATTATTACTATTA
* **
6741557 TTATTATTTTTTGTTATTATTATTACTATTA
1 TTATTATTTATCATTATTATTATTACTATTA
* *
6741588 -T-TT-TTTATCATTATTATTATTATTGTTA
1 TTATTATTTATCATTATTATTATTACTATTA
6741616 TTATTATT
1 TTATTATT
6741624 GCTAGTATTA
Statistics
Matches: 56, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
28 20 0.36
29 3 0.05
30 3 0.05
31 23 0.41
32 3 0.05
33 4 0.07
ACGTcount: A:0.28, C:0.04, G:0.03, T:0.65
Consensus pattern (31 bp):
TTATTATTTATCATTATTATTATTACTATTA
Found at i:6741664 original size:5 final size:5
Alignment explanation
Indices: 6741629--6741715 Score: 75
Period size: 5 Copynumber: 16.2 Consensus size: 5
6741619 TTATTGCTAG
* * *
6741629 TATTA TATTA CTATAGTA TAGTA TAGTA TATTA TATTG TATTA TATTA
1 TATTA TATTA -TAT--TA TATTA TATTA TATTA TATTA TATTA TATTA
* *
6741677 TGTTA TATTA TATTA TATCA TTATTA TTATTA TTATTA T
1 TATTA TATTA TATTA TATTA -TATTA -TATTA -TATTA T
6741716 TACCACCTTT
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
5 47 0.67
6 19 0.27
7 2 0.03
8 2 0.03
ACGTcount: A:0.36, C:0.02, G:0.06, T:0.56
Consensus pattern (5 bp):
TATTA
Found at i:6742523 original size:5 final size:5
Alignment explanation
Indices: 6742515--6742561 Score: 53
Period size: 5 Copynumber: 9.8 Consensus size: 5
6742505 AAATGGGTTA
* * *
6742515 AAAAT AAAAT AAAAT CAAAT -CAA- AAAAT AAAAT AAAAT AAAAG AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
6742562 AACCTACGAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
4 4 0.11
5 32 0.89
ACGTcount: A:0.79, C:0.04, G:0.02, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:6742541 original size:18 final size:17
Alignment explanation
Indices: 6742520--6742556 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
6742510 GGTTAAAAAT
*
6742520 AAAATAAAATCAAATCAA
1 AAAATAAAATAAAAT-AA
6742538 AAAATAAAATAAAATAA
1 AAAATAAAATAAAATAA
6742555 AA
1 AA
6742557 GAAAAAACCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.16
Consensus pattern (17 bp):
AAAATAAAATAAAATAA
Found at i:6742562 original size:23 final size:23
Alignment explanation
Indices: 6742514--6742563 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
6742504 AAAATGGGTT
* **
6742514 AAAAATAAAATAAAATCAAATCA
1 AAAAATAAAATAAAATAAAAGAA
6742537 AAAAATAAAATAAAATAAAAGAA
1 AAAAATAAAATAAAATAAAAGAA
6742560 AAAA
1 AAAA
6742564 CCTACGATCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.80, C:0.04, G:0.02, T:0.14
Consensus pattern (23 bp):
AAAAATAAAATAAAATAAAAGAA
Found at i:6743397 original size:3 final size:3
Alignment explanation
Indices: 6743391--6743482 Score: 130
Period size: 3 Copynumber: 30.7 Consensus size: 3
6743381 GATAAAAATA
*
6743391 AAT AAT AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
6743439 AAT AGT AAT AAC AAT AAT GAT AAA AAT AAT AAT GAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
6743483 ACAAGTTAAC
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 77 1.00
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:6743806 original size:26 final size:25
Alignment explanation
Indices: 6743732--6743798 Score: 80
Period size: 26 Copynumber: 2.6 Consensus size: 25
6743722 TTATAATTGG
* *
6743732 TGGGCCCAATTAGGCCTAAACCTCAA
1 TGGGCCTAATTAGGCC-GAACCTCAA
* *
6743758 TGGGCCTAATCGAGCCCGAACCTCAA
1 TGGGCCTAAT-TAGGCCGAACCTCAA
6743784 TGGGCCTAATTAGGC
1 TGGGCCTAATTAGGC
6743799 TCATACCTGA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
25 3 0.09
26 27 0.79
27 4 0.12
ACGTcount: A:0.27, C:0.30, G:0.24, T:0.19
Consensus pattern (25 bp):
TGGGCCTAATTAGGCCGAACCTCAA
Found at i:6744377 original size:114 final size:110
Alignment explanation
Indices: 6744132--6744601 Score: 378
Period size: 110 Copynumber: 4.2 Consensus size: 110
6744122 TTCGATGAAA
* * * * * * * * * *
6744132 ATCTGACATGAGTCGATATCAAATGATTAGGAAGATGCCATAAGTCAAAAGGTGACCAAGATCAA
1 ATCTAACATGAGTCAAGATCAAATGACTGGGATGATGCCACAAGTCGAAAGGTGAACAAGATCGA
* * * * ** *
6744197 TTCAAGGTAGAAAAT-A-ATCGGATTGATGTCGTAGGTCTGAAGATG
66 GTCAAGGTAAAAAATGACAT--AACTGATGTCGCGGGTCTAAAGATG
* * * **
6744242 ATATAACATGAGTTAAGATCAAATGACTGGGATGATGTCGTAAGTCGAAAGGTGAACAAGA-CTG
1 ATCTAACATGAGTCAAGATCAAATGACTGGGATGATGCCACAAGTCGAAAGGTGAACAAGATC-G
* * *
6744306 AGTCAAGGTCAAAAATAAATGATCA-GACTTATGTCGCGGGTCTAAAGATA
65 AGTCAAGGT---AAA-AAATGA-CATAACTGATGTCGCGGGTCTAAAGATG
* * *
6744356 ATCTAACATGAGTCAAGATCAAATAACTGGGATGATGCCACAAGTTGAAAGGTGACCAAGATCGA
1 ATCTAACATGAGTCAAGATCAAATGACTGGGATGATGCCACAAGTCGAAAGGTGAACAAGATCGA
* * *
6744421 GTCGAGGTAAAAAATGACATAACTGATGTCGTGGGTTTAAAGATG
66 GTCAAGGTAAAAAATGACATAACTGATGTCGCGGGTCTAAAGATG
* * * * * * ** *
6744466 ATCTGACATAAATCGAGATCAAATGACTAGGACGATGCCACAAGTTAAAAGATG-ACGAAGATCG
1 ATCTAACATGAGTCAAGATCAAATGACTGGGATGATGCCACAAGTCGAAAGGTGAAC-AAGATCG
* * * * *
6744530 AGTCGAGGTCAAAAATGATC-GAACGGATGTCACGGGTC-AAAGGATG
65 AGTCAAGGTAAAAAATGA-CATAACTGATGTCGCGGGTCTAAA-GATG
*
6744576 ATCTAACATGAGTCGAGATCAAATGA
1 ATCTAACATGAGTCAAGATCAAATGA
6744602 GTGGATAGTT
Statistics
Matches: 293, Mismatches: 54, Indels: 26
0.79 0.14 0.07
Matches are distributed among these distances:
109 7 0.02
110 192 0.66
111 4 0.01
113 2 0.01
114 85 0.29
115 2 0.01
117 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.22
Consensus pattern (110 bp):
ATCTAACATGAGTCAAGATCAAATGACTGGGATGATGCCACAAGTCGAAAGGTGAACAAGATCGA
GTCAAGGTAAAAAATGACATAACTGATGTCGCGGGTCTAAAGATG
Found at i:6751481 original size:9 final size:8
Alignment explanation
Indices: 6751456--6751480 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
6751446 ATGCAAATGC
6751456 ATAAAAAA
1 ATAAAAAA
6751464 ATAAAAAA
1 ATAAAAAA
6751472 ATAAAAAA
1 ATAAAAAA
6751480 A
1 A
6751481 AAGAGTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
ATAAAAAA
Found at i:6754721 original size:23 final size:22
Alignment explanation
Indices: 6754672--6754722 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 22
6754662 AAAATGGGTT
*
6754672 AAAAATAAAATCAAATAAAAGCA
1 AAAAATAAAATAAAATAAAAG-A
6754695 AAAAATAAAATAAAATGAAAAAGA
1 AAAAATAAAATAAAAT--AAAAGA
6754719 AAAA
1 AAAA
6754723 GCTTGTAATC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 15 0.60
24 5 0.20
25 5 0.20
ACGTcount: A:0.78, C:0.04, G:0.06, T:0.12
Consensus pattern (22 bp):
AAAAATAAAATAAAATAAAAGA
Found at i:6756276 original size:101 final size:101
Alignment explanation
Indices: 6756101--6756303 Score: 397
Period size: 101 Copynumber: 2.0 Consensus size: 101
6756091 AAAGAGAAGA
6756101 CTGGGAGCTTTTGAAGAAAAACGGAGGAATTTAGCTTTTATAGCGTCCCAACACAATGCCATTTC
1 CTGGGAGCTTTTGAAGAAAAACGGAGGAATTTAGCTTTTATAGCGTCCCAACACAATGCCATTTC
6756166 TAAGTGCCCAGGATCCGCGTGAACTCGAGTAGGATC
66 TAAGTGCCCAGGATCCGCGTGAACTCGAGTAGGATC
*
6756202 CTGGGAGCTTTTGAAGAAAAACGGAGGAATTTAGCTTTTATAGCGTCCCAACACGATGCCATTTC
1 CTGGGAGCTTTTGAAGAAAAACGGAGGAATTTAGCTTTTATAGCGTCCCAACACAATGCCATTTC
6756267 TAAGTGCCCAGGATCCGCGTGAACTCGAGTAGGATC
66 TAAGTGCCCAGGATCCGCGTGAACTCGAGTAGGATC
6756303 C
1 C
6756304 GTTCATCGCC
Statistics
Matches: 101, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
101 101 1.00
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (101 bp):
CTGGGAGCTTTTGAAGAAAAACGGAGGAATTTAGCTTTTATAGCGTCCCAACACAATGCCATTTC
TAAGTGCCCAGGATCCGCGTGAACTCGAGTAGGATC
Found at i:6756406 original size:24 final size:22
Alignment explanation
Indices: 6756349--6756413 Score: 58
Period size: 25 Copynumber: 2.8 Consensus size: 22
6756339 GGTTTTTCTT
6756349 TTTTCATTTTATTTTTTAATTTA
1 TTTTCATTTT-TTTTTTAATTTA
* * *
6756372 ATTTAAGTTTTTTTACTTTATTTTA
1 TTTTCA-TTTTTTT--TTTAATTTA
*
6756397 TTTTCATTTTTATTTTA
1 TTTTCATTTTTTTTTTA
6756414 TGTTACTTAT
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
22 4 0.12
23 7 0.21
24 10 0.30
25 12 0.36
ACGTcount: A:0.22, C:0.05, G:0.02, T:0.72
Consensus pattern (22 bp):
TTTTCATTTTTTTTTTAATTTA
Found at i:6761110 original size:27 final size:26
Alignment explanation
Indices: 6761051--6761102 Score: 86
Period size: 27 Copynumber: 2.0 Consensus size: 26
6761041 TGTGCAATAA
*
6761051 ACACTGGTATGTTTTGAATTAATTTC
1 ACACTGGTATGTTTTGAATTAATGTC
6761077 ACAACTGGTATGTTTTGAATTAATGT
1 AC-ACTGGTATGTTTTGAATTAATGT
6761103 GATCACTGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 2 0.08
27 22 0.92
ACGTcount: A:0.29, C:0.10, G:0.17, T:0.44
Consensus pattern (26 bp):
ACACTGGTATGTTTTGAATTAATGTC
Found at i:6763055 original size:30 final size:30
Alignment explanation
Indices: 6763019--6763078 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
6763009 AAATCGGAAT
6763019 TTTCCAAACT-AAGATTTGAATATTTGGTGG
1 TTTCCAAACTAAAG-TTTGAATATTTGGTGG
*
6763049 TTTCCAAACTAAAGTTTGAATTTTTGGTGG
1 TTTCCAAACTAAAGTTTGAATATTTGGTGG
6763079 CTCTGCTGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 25 0.89
31 3 0.11
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.42
Consensus pattern (30 bp):
TTTCCAAACTAAAGTTTGAATATTTGGTGG
Found at i:6763590 original size:13 final size:13
Alignment explanation
Indices: 6763574--6763607 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
6763564 TTTTAAAATC
*
6763574 AATTTTAAATTTG
1 AATTTTAAATTTA
6763587 AATTTTAAATTTA
1 AATTTTAAATTTA
6763600 AATTTTAA
1 AATTTTAA
6763608 CTTAATAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (13 bp):
AATTTTAAATTTA
Found at i:6763795 original size:28 final size:28
Alignment explanation
Indices: 6763763--6763821 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
6763753 AGCTTCTTTG
6763763 CTAGTTTCAAACCAAAGAAAAAGAGGTT
1 CTAGTTTCAAACCAAAGAAAAAGAGGTT
*
6763791 CTAGTTTCAAACCGAAGAAAAAGAGGTT
1 CTAGTTTCAAACCAAAGAAAAAGAGGTT
6763819 CTA
1 CTA
6763822 TATCTTTCTC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.44, C:0.15, G:0.19, T:0.22
Consensus pattern (28 bp):
CTAGTTTCAAACCAAAGAAAAAGAGGTT
Found at i:6764230 original size:12 final size:11
Alignment explanation
Indices: 6764215--6764265 Score: 57
Period size: 12 Copynumber: 4.3 Consensus size: 11
6764205 TTTGATTTTA
6764215 TAATAAAATAAT
1 TAATAAAA-AAT
6764227 TAATAAAAATAT
1 TAATAAAAA-AT
*
6764239 TTATAAGTAAAAT
1 TAATAA--AAAAT
6764252 TAATAAAAAAT
1 TAATAAAAAAT
6764263 TAA
1 TAA
6764266 AATTATATCT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
11 9 0.26
12 15 0.44
13 7 0.21
14 3 0.09
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (11 bp):
TAATAAAAAAT
Found at i:6767941 original size:163 final size:162
Alignment explanation
Indices: 6767667--6767974 Score: 490
Period size: 163 Copynumber: 1.9 Consensus size: 162
6767657 AATAAAACAT
6767667 AAGTAATATAATCAGAAGCAACCAGTCTGATTTGATCCTTTCATCTCATTATACTGTAACAAGCA
1 AAGTAATATAATCAGAAGCAACCAGTCTGATTTGATCCTTTCATCTCATTATACTGTAACAAGCA
* * * *
6767732 ACCACCTTGAATTGATAGTTTCTGGTCTACCGCCACAGATCCTTTTTCTCTCTCATGCTACTAGT
66 ACCACCATGAATTGAGACTTTCTGGTCTACCGCCACAGAACCTTTTTCTCTCTCATGCTACTAGT
*
6767797 TCCTTAATGGTTGAAAGTGTTTATAGAATGAC
131 TCCTTAATGGATGAAAGTGTTTATAGAATGAC
* * * * *
6767829 AAGTAATATAATCAGAATCAACCAGTCTGATTTGATCCTTTCATTCTCATTGTCCTGTAAGAATC
1 AAGTAATATAATCAGAAGCAACCAGTCTGATTTGATCCTTTCA-TCTCATTATACTGTAACAAGC
* * *
6767894 AACCACCATGAATTGAGACTTTCTGGTCTACCGCCACAGAACCTTTTTGTCTCTCATTCTATTAG
65 AACCACCATGAATTGAGACTTTCTGGTCTACCGCCACAGAACCTTTTTCTCTCTCATGCTACTAG
6767959 TTCCTTAATGGATGAA
130 TTCCTTAATGGATGAA
6767975 GGTTTTAACA
Statistics
Matches: 132, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
162 42 0.32
163 90 0.68
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (162 bp):
AAGTAATATAATCAGAAGCAACCAGTCTGATTTGATCCTTTCATCTCATTATACTGTAACAAGCA
ACCACCATGAATTGAGACTTTCTGGTCTACCGCCACAGAACCTTTTTCTCTCTCATGCTACTAGT
TCCTTAATGGATGAAAGTGTTTATAGAATGAC
Found at i:6780952 original size:2 final size:2
Alignment explanation
Indices: 6780945--6780976 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
6780935 TTAGGGTTGA
6780945 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6780977 TAATTTGCTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6781792 original size:23 final size:23
Alignment explanation
Indices: 6781766--6781821 Score: 96
Period size: 23 Copynumber: 2.4 Consensus size: 23
6781756 AAAGTTATTT
6781766 GATTATAATTATAATTTTTAATG
1 GATTATAATTATAATTTTTAATG
6781789 GATTATAATTATAATTTTTAATG
1 GATTATAATTATAATTTTTAATG
6781812 G-TATATAATT
1 GAT-TATAATT
6781822 TTATAAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
22 1 0.03
23 31 0.97
ACGTcount: A:0.39, C:0.00, G:0.09, T:0.52
Consensus pattern (23 bp):
GATTATAATTATAATTTTTAATG
Found at i:6784514 original size:16 final size:16
Alignment explanation
Indices: 6784493--6784523 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
6784483 TTTGAGTAAT
6784493 TGATATATTTCATGAG
1 TGATATATTTCATGAG
6784509 TGATATATTTCATGA
1 TGATATATTTCATGA
6784524 TGTATTTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.06, G:0.16, T:0.45
Consensus pattern (16 bp):
TGATATATTTCATGAG
Found at i:6785035 original size:15 final size:15
Alignment explanation
Indices: 6785015--6785044 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
6785005 AGCACACGAA
*
6785015 AAAACAAGTAAAAAG
1 AAAACAAGAAAAAAG
6785030 AAAACAAGAAAAAAG
1 AAAACAAGAAAAAAG
6785045 TAAATGAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.07, G:0.13, T:0.03
Consensus pattern (15 bp):
AAAACAAGAAAAAAG
Found at i:6787349 original size:14 final size:14
Alignment explanation
Indices: 6787321--6787379 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
6787311 AAAGATTATT
6787321 AAAATATAAAT-AAA
1 AAAATA-AAATAAAA
*
6787335 AAAAGAAAATAAAA
1 AAAATAAAATAAAA
* * *
6787349 ATATTAAAGTAAAA
1 AAAATAAAATAAAA
*
6787363 GAAATAAAATAAAA
1 AAAATAAAATAAAA
6787377 AAA
1 AAA
6787380 GTGCTAAAAA
Statistics
Matches: 34, Mismatches: 10, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
13 4 0.12
14 30 0.88
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (14 bp):
AAAATAAAATAAAA
Found at i:6787703 original size:14 final size:15
Alignment explanation
Indices: 6787684--6787726 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
6787674 CAAGAACAGC
6787684 AAGAAAAAATAAA-A
1 AAGAAAAAATAAATA
6787698 AAGAAAAAA-AAATA
1 AAGAAAAAATAAATA
6787712 AAGATAAAAAGTAAA
1 AAGA-AAAAA-TAAA
6787727 GAGAGTATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 3 0.12
14 14 0.56
15 5 0.20
17 3 0.12
ACGTcount: A:0.81, C:0.00, G:0.09, T:0.09
Consensus pattern (15 bp):
AAGAAAAAATAAATA
Found at i:6788254 original size:17 final size:16
Alignment explanation
Indices: 6788229--6788268 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
6788219 ATAAAAAAGT
* *
6788229 AAAAAAAATTACAACA
1 AAAAAAAATAAAAACA
6788245 AAATAAAAATAAAAACA
1 AAA-AAAAATAAAAACA
6788262 AAAAAAA
1 AAAAAAA
6788269 GTGCAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.82, C:0.07, G:0.00, T:0.10
Consensus pattern (16 bp):
AAAAAAAATAAAAACA
Found at i:6788267 original size:20 final size:20
Alignment explanation
Indices: 6788206--6788267 Score: 54
Period size: 20 Copynumber: 3.0 Consensus size: 20
6788196 AAAAAATGGT
* *
6788206 ATAAAAATCAAAGATAAAAAA
1 ATAAAAAT-AAAAACAAAAAA
* * *
6788227 GTAAAAA-AAATTACAACAAA
1 ATAAAAATAAA-AACAAAAAA
6788247 ATAAAAATAAAAACAAAAAA
1 ATAAAAATAAAAACAAAAAA
6788267 A
1 A
6788268 AGTGCAAAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
19 3 0.09
20 20 0.62
21 9 0.28
ACGTcount: A:0.77, C:0.06, G:0.03, T:0.13
Consensus pattern (20 bp):
ATAAAAATAAAAACAAAAAA
Found at i:6788627 original size:33 final size:33
Alignment explanation
Indices: 6788590--6788660 Score: 92
Period size: 33 Copynumber: 2.2 Consensus size: 33
6788580 CCAAATTATT
*
6788590 ATAAAAATTATTAAAATATAAAG-AA-AAAAGAAA
1 ATAAAAA-TATTAAAATA-AAAGAAATAAAACAAA
*
6788623 ATAAAAATATTAAAGTAAAAGAAATAAAACAAA
1 ATAAAAATATTAAAATAAAAGAAATAAAACAAA
6788656 ATAAA
1 ATAAA
6788661 GTGCTAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
31 4 0.12
32 11 0.32
33 19 0.56
ACGTcount: A:0.73, C:0.01, G:0.06, T:0.20
Consensus pattern (33 bp):
ATAAAAATATTAAAATAAAAGAAATAAAACAAA
Found at i:6788642 original size:24 final size:23
Alignment explanation
Indices: 6788602--6788651 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 23
6788592 AAAAATTATT
6788602 AAAATATAAAGAAAAAAGAAAATA
1 AAAATATAAAGAAAAAAG-AAATA
*
6788626 AAAATATTAAAG-TAAAAGAAATA
1 AAAATA-TAAAGAAAAAAGAAATA
6788649 AAA
1 AAA
6788652 CAAAATAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 8 0.33
24 11 0.46
25 5 0.21
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (23 bp):
AAAATATAAAGAAAAAAGAAATA
Found at i:6788660 original size:24 final size:24
Alignment explanation
Indices: 6788615--6788662 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
6788605 ATATAAAGAA
* *
6788615 AAAAGAAAATAAAAATATTAAAGT
1 AAAAGAAAATAAAAAAAATAAAGT
6788639 AAAAG-AAATAAAACAAAATAAAGT
1 AAAAGAAAATAAAA-AAAATAAAGT
6788663 GCTAAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 8 0.38
24 13 0.62
ACGTcount: A:0.73, C:0.02, G:0.08, T:0.17
Consensus pattern (24 bp):
AAAAGAAAATAAAAAAAATAAAGT
Found at i:6788923 original size:663 final size:662
Alignment explanation
Indices: 6787258--6794804 Score: 10363
Period size: 664 Copynumber: 11.5 Consensus size: 662
6787248 AAAAGTTAAA
* * * * *
6787258 AAAAAAATGAGAACACAAAAAAATCCAAAAATAAAAAAATTCCAAATTATTATAAAGATTATTAA
1 AAAAAAATGAGAATATAAAAAAAACCAAAAATAAGAAAATTCCAAATTATTATAAAAATTATTAA
6787323 AATATAAATAAAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAA-AAAGTGCTAA
66 AATAT-AA-AAAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTAA
*
6787387 AAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGCAAAAGT
129 AAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAGT
* * * *
6787452 AACGTTTCAAAAG-AAAAAAA-AAAGACA-A-ATGAATAAAATTTTCAAAAATGAAAAAGAATGA
194 AACGTTTCAAAAGAAAAAAAATAAAAAAAGACAGGAATAAAAATTTCAAAAATGAAAAAGAATGA
** *
6787513 CAAAATAGAAAAAAAATTAGTTTAGGTAAACAAAAATGAAAAAATATAACCAATAAGATGAAAAA
259 CAAAATAGAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAGAAAAA
*
6787578 AAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATGAAAACAAA
324 AAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATAAAAACAAA
*
6787643 AAGAAGTG---------C-------------AAAATGTGTGCAAAAACAAATACAAGAACAGCAA
389 AAGAAGTGCAAAAAAACCAAGTGTGAGATTAAAAATGTGTGCAAAAACAAATACAAGAAAAGCAA
* *
6787686 GAAAAAATAAAAAAGAAAAAAAAATAAAGATAAAAAGTAAAGAGAGTATGAAAAGAAAGAAAATA
454 GAAAAAATAAAAAAG-GAAAAAAATAAAGATAAAAAGTAAAGAGAGTACGAAAAGAAAGAAAATA
* *
6787751 AAATATATGACAAATCAGATTGAAG--T--AAAAAAA--AAAGTAAAAAGCAAAATAATTTAGTC
518 AAATATATGACAAATCAGATTGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAATTTAGTA
* * *
6787810 AGAGGAATAGAATGAAAAAAATGGAAGCAAAAGTAATT-AGTGAAAAAAAAAGAATGAACATAAG
583 AGAGGAATAGAATGAAAAAAATGGAAGGAAAAGT-ATTCAGTAAAAAAAAAAGAATGAAAATAAG
*
6787874 AGAAAAGTTAAAAAAG
647 AAAAAAGTTAAAAAAG
* * *
6787890 AAAAAAAATGAGAATATAAAAAAATA-TAAAAATAAAAAAATTCCAAACTATTATAAAAATTATT
1 -AAAAAAATGAGAATATAAAAAAA-ACCAAAAATAAGAAAATTCCAAATTATTATAAAAATTATT
* *
6787954 AAAATAT-----------AAATAAAAATATTAAAGTAAAAGAAATAAAACAAAATAAAATGCTAA
64 AAAATATAAAAAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTAA
* *
6788008 AAAAAGAAAATGAAATTAAAAGTCATCAAAAACAAAAAATAAAATAGGTAAAAAAATGAAAAAGT
129 AAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAGT
* * *
6788073 AACGTTTCAAAAG-AAAAAAA-AAACACA-A-AGGAATAAAATTTTCAAAAATGAAAAAGAATGA
194 AACGTTTCAAAAGAAAAAAAATAAAAAAAGACAGGAATAAAAATTTCAAAAATGAAAAAGAATGA
6788134 CAAAATAGAAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAGAAAA
259 CAAAATAG-AAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAGAAAA
* * * *
6788199 AAATGGTAT-AAAAATCAAAGATAAAAAAGTAAAAAAAATTACAACAAAATAAAAATAAAAACAA
323 AAAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATAAAAACAA
* *
6788263 AAAAAAGTGCAAAAAAATCAAGTGTGAGATTAAAAATGTGTGCAAAAACAAATACAAGAAAAGCA
388 AAAGAAGTGCAAAAAAACCAAGTGTGAGATTAAAAATGTGTGCAAAAACAAATACAAGAAAAGCA
* *
6788328 AGAAAAAATAAAAAAGGAAAAAAATAAAGATAAAAAGTAAAGAGAATACGAAAAGAAAGAAAAGA
453 AGAAAAAATAAAAAAGGAAAAAAATAAAGATAAAAAGTAAAGAGAGTACGAAAAGAAAGAAAATA
** * * *
6788393 AAATATATGTGAAACCAGAATGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAATATAGTA
518 AAATATATGACAAATCAGATTGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAATTTAGTA
* *
6788458 AAAGGAATAGAATGAAAAAAAATGGAAGTAAAAGTATTCAGTAAAAAAAAAAGAATGAAAATAAG
583 AGAGGAATAGAATG-AAAAAAATGGAAGGAAAAGTATTCAGTAAAAAAAAAAGAATGAAAATAAG
6788523 AAAAAAGTTAAAAAAG
647 AAAAAAGTTAAAAAAG
6788539 AAAAAAAATGAGAATATAAAAAAAA-CAAAAATAAGAAAATTCCAAATTATTATAAAAATTATTA
1 -AAAAAAATGAGAATATAAAAAAAACCAAAAATAAGAAAATTCCAAATTATTATAAAAATTATTA
*
6788603 AAATATAAAGAAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAACAAAATAAAGTGCTAA
65 AAATATAAA-AAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTAA
*
6788668 AAAAAGAAAA-GAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAAT
129 AAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAGT
* *
6788732 AATGTTTCAAAAGAAAAAAAATAAAAAAAGACAGGAATAAAAATTTCAAAAATGAAAAAGATTGA
194 AACGTTTCAAAAGAAAAAAAATAAAAAAAGACAGGAATAAAAATTTCAAAAATGAAAAAGAATGA
* ** * *
6788797 CAAAAGA-AAAAAAAATTAGTTTAGATTAACAAAAATAAAAAAAATAGAACCAATAAGAAGAAAA
259 CAAAATAGAAAAAAAATTAGTTTAGACAAACAAAAAT-GAAAAAATATAACCAATAAGAAGAAAA
* * *
6788861 AAAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAATTGCTACAAAATAAAAATAAAAACGA
323 AAAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATAAAAACAA
* *
6788926 AAGGAAGTGCAAAAAAAACCAAGTGTGAGATTAAAAATATGTGCAAAAACAAATACAAGAAAAGC
388 AAAGAAGTGC-AAAAAAACCAAGTGTGAGATTAAAAATGTGTGCAAAAACAAATACAAGAAAAGC
* *
6788991 AAGAAAAAATAGAAAAGGAAAAAAATAAAGATAAAAAGTAAAGAGAGTACAAAAAGAAAGAAAAT
452 AAGAAAAAATAAAAAAGGAAAAAAATAAAGATAAAAAGTAAAGAGAGTACGAAAAGAAAGAAAAT
* * *
6789056 AAAATATATGACAAATCAAATTGTAGTATAAAAAAAAATCAAAGTAAAAAGGAAAACAATTTAGT
517 AAAATATATGACAAATCAGATTGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAATTTAGT
* * * * *
6789121 AAAAGAAATAGAATGAAAAAAAAGGAAGGAAAAGTATTCAGT-AAAAAAAAA-AATTAACATAAG
582 AAGAGGAATAGAATGAAAAAAATGGAAGGAAAAGTATTCAGTAAAAAAAAAAGAATGAAAATAAG
6789184 AAAAAAGTT-------
647 AAAAAAGTTAAAAAAG
6789193 AAAAAAATGAGAATATAAAAAAAATCCAAAAATAAGAAAATTCCAAATTATTATAAAAATTATTA
1 AAAAAAATGAGAATATAAAAAAAA-CCAAAAATAAGAAAATTCCAAATTATTATAAAAATTATTA
*
6789258 AAATATAAACAAAAAA-AAAATAAAAATATTAAAGTAAATGAAATAAAATAAAATAAAGTGCT-A
65 AAATATAAA-AAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTAA
* *
6789321 AAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATGAAATAGGTAATAAAATGAAAAAGT
129 AAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAGT
* * *
6789386 AACTTTTCAAAAGAAAAAAAATAAAAAAAGACAAAGCAAT-AAAATTTCCAAAAATGAAAAAGAG
194 AACGTTTCAAAAGAAAAAAAATAAAAAAAGAC--AGGAATAAAAATTT-CAAAAATGAAAAAGAA
*
6789450 TGATAAAATA-AAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAGAA
256 TGACAAAATAGAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAGAA
* * * *
6789514 AAAATAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAATTCCAACAAAATAAAAATAAAAAC
321 AAAAAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATAAAAAC
* * * * *
6789579 AAAAGGAACTGCAAAAAAACAAAGTGCGAGATTAAAAATGTGTGCAAAAACAAATACAAGAAAGG
386 AAAAAGAAGTGCAAAAAAACCAAGTGTGAGATTAAAAATGTGTGCAAAAACAAATACAAGAAAAG
* * * *
6789644 TAAGAAAAAATAGAAAAGGAAAGAAATAAAGATAAAAAGTAAAGAGAGTACGAAAAAAAAGAAAA
451 CAAGAAAAAATAAAAAAGGAAAAAAATAAAGATAAAAAGTAAAGAGAGTACGAAAAGAAAGAAAA
6789709 TAAAATATATGACAAATCAGATTGAAGTAT-AAAAAAAATCAAAGTAAAAAGGAAAATAATTTAG
516 TAAAATATATGACAAATCAGATTGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAATTTAG
** * * *
6789773 TAAGACAAATAGAATGAAAAAAAATGGAAGGAAAAGTGTTTAGTTAAAAAAAAAGAAAAATATGA
581 TAAGAGGAATAGAATG-AAAAAAATGGAAGGAAAAGTATTCAG-T--AAAAAAA-AAAGA-ATGA
6789838 GAATATAAAAAAGTTAAAATATGAGAATATAAAAAAGTTAAAAG
640 -AA-AT----AAG--AAAA-A--AG--T-T----AA---AAAAG
*
6789882 AGAAAAATATGAGAATATAAAAAAAATCCAAAAATAAG-AAATTTCAAATTATTATAAAAATTAT
1 A-AAAAA-ATGAGAATATAAAAAAAA-CCAAAAATAAGAAAATTCCAAATTATTATAAAAATTAT
*
6789946 TAAAATAT-AAATAAAAG-AAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTA
63 TAAAATATAAAAAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTA
6790009 AAAAAAGAAAATGAAATTAAAAGT-AA-AAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAG
128 AAAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAG
* *
6790072 TAATGTTTCAAAAGAAAAAAAA-AAAAGACA-A-AGGAAT-AAAATTTCCAAAAATGAAAACA-A
193 TAACGTTTCAAAAGAAAAAAAATAAAA-AAAGACAGGAATAAAAATTT-CAAAAATGAAAA-AGA
*
6790132 ATGACAAAATAGAAAGAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAGA
255 ATGACAAAATAGAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAGA
* ** * *
6790197 AAAAAAAAGTACAAAAAATCAAAGATAAAAAATTAAAAAAAGTTGCTACAAAATAAAATTAAAAA
320 AAAAAAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATAAAAA
* * *
6790262 CAAAAGGAAGTGCAAAAAAACCAAGTGTGAGATTAAAAATATGTGCAAAAACAAATACAATAAAA
385 CAAAAAGAAGTGCAAAAAAACCAAGTGTGAGATTAAAAATGTGTGCAAAAACAAATACAAGAAAA
* *
6790327 GCAAGAAAAAAT--------------A-AAA-ATAAAAAGTAAAGAGTGTACGAAACGAAAGAAA
450 GCAAGAAAAAATAAAAAAGGAAAAAAATAAAGATAAAAAGTAAAGAGAGTACGAAAAGAAAGAAA
* *
6790376 ATAAAATATATGACAAATTAGATTGAAGTATAAAAAGAAATCAAAGTAAAAAGGAAAATAATTTA
515 ATAAAATATATGACAAATCAGATTGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAATTTA
* * * *
6790441 GTAAGAGGAATAGAATGAAAAAAAAGGAAGGAAAAGTATTTAGTAAAAAAAAAGGAATGAATATA
580 GTAAGAGGAATAGAATGAAAAAAATGGAAGGAAAAGTATTCAGTAAAAAAAAAAGAATGAAAATA
6790506 AGAAAAAAGTTAAAAAAG
645 AGAAAAAAGTTAAAAAAG
* *
6790524 AAAAAAAATGAGAATATAAAAAAATA-TAAAAATAAGAAAATTCTAAATTATTATAAAAATTATT
1 -AAAAAAATGAGAATATAAAAAAA-ACCAAAAATAAGAAAATTCCAAATTATTATAAAAATTATT
*
6790588 AAAATAT--AAATAAA-AAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTAA
64 AAAATATAAAAAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTAA
6790650 AAAAAGAAAATGAAATTAAAAGTCAAC--AAA-AAAAAATAAAATAGGTAAGAAAATGAAAAAGT
129 AAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAGT
* * *
6790712 AACGTTTCAAAAGAAAAAAAA-AAAAGACA-A-AGGAATAAAATTTTCAAAAATTAAAAAGAATG
194 AACGTTTCAAAAGAAAAAAAATAAAA-AAAGACAGGAATAAAAATTTCAAAAATGAAAAAGAATG
6790774 ACAAAATAGAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAG-AAA
258 ACAAAATAGAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAGAAAA
* *
6790838 AAAAGTTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTATAAAATAAAAATAAAAACAA
323 AAAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATAAAAACAA
* *
6790903 AAAGAAGTGCAAAAAAACCAAGTGTCAGATTAAAAATGTGTGCAAAAACAAATACAAGAAATGCA
388 AAAGAAGTGCAAAAAAACCAAGTGTGAGATTAAAAATGTGTGCAAAAACAAATACAAGAAAAGCA
** * * *
6790968 AGAAAAAAT-AAAAAGGAAAAAAATGTATATAAAAAATAAAGAGAGCACG-AAA-AAA-AAAAT-
453 AGAAAAAATAAAAAAGGAAAAAAATAAAGATAAAAAGTAAAGAGAGTACGAAAAGAAAGAAAATA
*
6791028 --ATATATGACAAATCATATTGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAATTTAGTA
518 AAATATATGACAAATCAGATTGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAATTTAGTA
6791091 AGAGGAATAGAATGAAAAAAATGGAAGGAAAAGTATTCAGTAAAAAAAAAAGAATGAAAATAAGA
583 AGAGGAATAGAATGAAAAAAATGGAAGGAAAAGTATTCAGTAAAAAAAAAAGAATGAAAATAAGA
*
6791156 AAAAAGTTTAAAAAG
648 AAAAAGTTAAAAAAG
*
6791171 AAAAAAATGAG--TAT-------A-TAAAAAT------A-TCCAAA--A--ATAAGAAA--A-T-
1 AAAAAAATGAGAATATAAAAAAAACCAAAAATAAGAAAATTCCAAATTATTATAA-AAATTATTA
* * * *
6791211 AAA-A-ACAAAAAAGGAAAATAAAAATATTAAGGTAAAAGAAATAAAATAAAATAAAGTG-TTAA
65 AAATATAAAAAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTAAA
* *
6791273 AAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATATGTGAGAAAATGAAAAAGTA
130 AAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAGTA
* *
6791338 ACATTTCAAAAGAAAAAAAATAAAAAAAGACAAAAGAATAAAAATTTCAAAAATGAAAAAGAATG
195 ACGTTTCAAAAGAAAAAAAATAAAAAAAGAC--AGGAATAAAAATTTCAAAAATGAAAAAGAATG
* * * * *
6791403 ACAAAATAGAAAGAAAATTAGTTTAGAGAAACAAAAATGAAAAAATTTAACCAACAAAAAGAAAA
258 ACAAAATAGAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAG--AA
6791468 AAAAAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATAAAAAC
321 AAAAAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATAAAAAC
* * * *
6791533 AAAATGAAGTGCCAAATAACCAAGTGTGAGATTAAAAATGTGTGCAAAAACAAATACAAGAAAAA
386 AAAAAGAAGTGCAAAAAAACCAAGTGTGAGATTAAAAATGTGTGCAAAAACAAATACAAGAAAAG
* *
6791598 CAAGAAAAATTAAAAAA-GATAAAAAATAAAGATAAAAAGTAAAAAGAGTACGAAAAGAAAGAAA
451 CAAGAAAAAATAAAAAAGGA-AAAAAATAAAGATAAAAAGTAAAGAGAGTACGAAAAGAAAGAAA
* * * *
6791662 ATAAAATATATGACCAATCAAATTGAAGTATAAAAAAAAATCAAAGGAAAAATGAAAATAATTT-
515 ATAAAATATATGACAAATCAGATTGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAATTTA
* * *
6791726 GATAAGAGTAATAGGATGAAAAAAATGGAAGGAAAAGTATTCAGTAGAAAAAAAAGAATGAAAAT
580 G-TAAGAGGAATAGAATGAAAAAAATGGAAGGAAAAGTATTCAGTAAAAAAAAAAGAATGAAAAT
**
6791791 AAGAAAAAAGAAAAAAAAG
644 AAGAAAAAAGTTAAAAAAG
* *
6791810 AAAAAAATGAGAATATAAAAAAAACCAAAAAATAAGAAAATTCTAAATTATTATGAAAATTATTA
1 AAAAAAATGAGAATATAAAAAAAACC-AAAAATAAGAAAATTCCAAATTATTATAAAAATTATTA
* * * * *
6791875 AAATAT-AAATAAAA-ATATTAAAAATATTAAAGTAAAAAAAATAAAACAAAATAAAGTGCTAAA
65 AAATATAAAAAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTAAA
* **
6791938 AAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAAAGAAAAAAAA
130 AAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATG-AAAAAGT
*
6792003 AACGTTTCAAAAGAAAAAAAATAAAAAAAAAGACAAAGGAATAAAATTTTCAAAAATGAAAAAGA
194 AACGTTTCAAAAGAAAAAAAAT--AAAAAAAGAC--AGGAATAAAAATTTCAAAAATGAAAAAGA
* * * * *
6792068 ATGACAAAAT-GAAAAAAAAATTAGTTTAGAGAAACACATATGAAAAAATATAAGCAATAAAAAG
255 ATGACAAAATAG-AAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAG
* *
6792132 AAAAAATAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACAACAAAATAAAAATAAAA
319 AAAAAAAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATAAAA
* * * *
6792197 ACAATAGGAAGTGAAAAAAAAAACCAAGTGTGAGATTAAAAATGTGTGCAAAAAACAAATATAAG
384 ACAAAAAGAAGTG--CAAAAAAACCAAGTGTGAGATTAAAAATGTGTGC-AAAAACAAATACAAG
* * * *
6792262 AAAAGC-AG---GAA-AAAAAAGGAAAAAAATAAAGATAAAAAGTAAAAAGAATACGAAAAAAAA
446 AAAAGCAAGAAAAAATAAAAAAGGAAAAAAATAAAGATAAAAAGTAAAGAGAGTACGAAAAGAAA
* *
6792322 GAAAAGAAAATATATGACAAATCAGATTGAAGTAT-AAAAAAAATCAAAGTAAAAATGAAAATAA
511 GAAAATAAAATATATGACAAATCAGATTGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAA
6792386 TTTAGTAAGAGGAATAGAATGAAAAAAATGGAAGGAAAAGTATTCAGTAAAAAAAAAAAGAATG-
576 TTTAGTAAGAGGAATAGAATGAAAAAAATGGAAGGAAAAGTATTCAGT-AAAAAAAAAAGAATGA
*
6792450 AAATAAGAAAAAAG-TGAAAAAG
640 AAATAAGAAAAAAGTTAAAAAAG
* * * *
6792472 --AAAAA--A-AATATAAATAAAATCCAAAAATAATAAAATTCCAAATTGTTATGAAAATTATTA
1 AAAAAAATGAGAATATAAA-AAAAACCAAAAATAAGAAAATTCCAAATTATTATAAAAATTATTA
6792532 AAATATAAATAAAAAAGGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTA
65 AAATATAAA-AAAAAA-GAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTA
* *
6792597 AAAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATGAAATAGTTAAGAAAATGAAAAAG
128 AAAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAG
* * * * *
6792662 TAACATTTGAAAAGAAAAAAAATAAAAAAAGACAAATGAAT-AAAATTGTCAAAACTAAAAAAGA
193 TAACGTTTCAAAAGAAAAAAAATAAAAAAAGAC--AGGAATAAAAATT-TCAAAAATGAAAAAGA
* * * *
6792726 ATGAAAAAATAG-AAAAAAATTATTTTAGATAAACAAAAGTGAAAAAATATAACCAATAAGAAGA
255 ATGACAAAATAGAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAGA
* *
6792790 AAAAAAGGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAATTACTACAAAATAAAAATAAAAA
320 AAAAAAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATAAAAA
*
6792855 CAAAAAGAAGTGCAAAAAAAACCAAGTGTGAGATTAAAAATGTGTGCAAAAAACAAATATAAGAA
385 CAAAAAGAAGTGC-AAAAAAACCAAGTGTGAGATTAAAAATGTGTGC-AAAAACAAATACAAGAA
6792920 AAGCAAGAAAAAATAAAAAA-GAAAAAAATAAAGGA-AAAAAGTAGAAG-GAGTACGAAAAGAAA
448 AAGCAAGAAAAAATAAAAAAGGAAAAAAATAAA-GATAAAAAGTA-AAGAGAGTACGAAAAGAAA
* * * *
6792982 AAAAATAAAATATATGACAAATCATATTGAAGTAT-AAAAAAAATCAAAGGAAAAAAGAAAATAA
511 GAAAATAAAATATATGACAAATCAGATTGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAA
** * * *
6793046 TTTAGTAAGACAAATAGAATGAAAAAAATGAAAGGAAAAATATTCAGT--AAAAAAAA-TATGAA
576 TTTAGTAAGAGGAATAGAATGAAAAAAATGGAAGGAAAAGTATTCAGTAAAAAAAAAAGAATGAA
*
6793108 CATAAGAAAAAAGTTAAAAAAG
641 AATAAGAAAAAAGTTAAAAAAG
6793130 -AAAAAATGAGAATATAAAAAAAATCCAAAAATAAGAAAATTCCAAATTATTATAAAAATTATTA
1 AAAAAAATGAGAATATAAAAAAAA-CCAAAAATAAGAAAATTCCAAATTATTATAAAAATTATTA
* * *
6793194 AAATAGAAATAAAAAAAGAAAATATAAATATTAAAGTAAAAGAAATAAAATAAACTAAAGTGCTA
65 AAATA-TAA-AAAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTA
6793259 AAAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAG
128 AAAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAG
* * *
6793324 TAACTTTTCAAAAGAAGAAAAATAAAAAAAAAACAAAGGAAT-AAAATTTCCAAAAATGAAAAAG
193 TAACGTTTCAAAAGAAAAAAAAT-AAAAAAAGAC--AGGAATAAAAATTT-CAAAAATGAAAAAG
6793388 AATGACAAAATAGAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAG
254 AATGACAAAATAGAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAG
* *
6793453 AAACAAAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTGCTACAAAA-AAAAA-AAAA
319 AAAAAAAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATAAAA
* * *
6793516 CCAAAAAGAAGTGCAAAAAAACCAAATGTGAGATTAAAAATATGTGCAAAAACAAATACAAGAAA
384 ACAAAAAGAAGTGCAAAAAAACCAAGTGTGAGATTAAAAATGTGTGCAAAAACAAATACAAGAAA
***
6793581 AGCAAGAAAAAATAAAAAAATTAAAAAATAAAGATAAAAAGTAAAGAGAGTACGAAAAGAAAGAA
449 AGCAAGAAAAAATAAAAAAGGAAAAAAATAAAGATAAAAAGTAAAGAGAGTACGAAAAGAAAGAA
* * **
6793646 AATAAAATATATGACAAATTAGATTGAAATATAAAAAAAAATCGGAGTAAAAA--AAAATAATTT
514 AATAAAATATATGACAAATCAGATTGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAATTT
6793709 AGTAAGAGGAATAGAATGAAAAAAATGGAAGGAAAAGTATTCAGTAAAGAAAAAAA-AATGAAAA
579 AGTAAGAGGAATAGAATGAAAAAAATGGAAGGAAAAGTATTCAGTAAA-AAAAAAAGAATGAAAA
6793773 TAAGAAAAAAGTTAAAAAAG
643 TAAGAAAAAAGTTAAAAAAG
* * *
6793793 AAAAAAATAAGAATATAAAAAAAATCCAAAAATAAAAAAATTCCAAATTGTTATAAAAATTATTG
1 AAAAAAATGAGAATATAAAAAAAA-CCAAAAATAAGAAAATTCCAAATTATTATAAAAATTATT-
**
6793858 AACCTATAAATAAAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCT
64 AAAATAT-AA-AAAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCT
*
6793923 AAAAAAAGAAAATGAAATTAAAAGTCAATAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAA
127 AAAAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAA
* * *
6793988 GTAACGTTTCAAAGGAAAAAAAA-AAAGAAAA-AC--GAATAAAATTTTCAAAATTGAAAAAGAA
192 GTAACGTTTCAAAAGAAAAAAAATAAA-AAAAGACAGGAATAAAAATTTCAAAAATGAAAAAGAA
*
6794049 TGACAAAATAGAAAAAAAATTAGTTTAGACAAAC-AAAATGAAAAAATATAACAAATAAGAAGAA
256 TGACAAAATAGAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAGAA
* *
6794113 AGAAAAGGTATGAAAAATCAAAGATAAAAAATTTAAAAAAGTTACTACAAAATAAAAATAAAAAC
321 AAAAAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATAAAAAC
* * * *
6794178 AAAAAGAAGCGTAGAAAAACCAAGTGTGATATTAAAAATGTGTGCAAAAACAAATACAA-AAAAT
386 AAAAAGAAGTGCAAAAAAACCAAGTGTGAGATTAAAAATGTGTGCAAAAACAAATACAAGAAAA-
* * * * * *
6794242 GCAAGAAAAAATAAAAAAAGATAAAAATAAAGATAAAAAGCAAAGAGAGCAGGAAAAAAAAGAAA
450 GCAAGAAAAAATAAAAAAGGAAAAAAATAAAGATAAAAAGTAAAGAGAGTACGAAAAGAAAGAAA
* * * *
6794307 ATAAAATGTATGACAAATCATATTGAAGTAT-AAAAAAAATTAAAGTAAAAAGGAAAGTAATTTA
515 ATAAAATATATGACAAATCAGATTGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAATTTA
* *
6794371 GTAAAAGGAATAGAATGAAAAAATTGGAAGGAAAAGTATTCAGTAAAAAAAAAAAGAATGAAAAT
580 GTAAGAGGAATAGAATGAAAAAAATGGAAGGAAAAGTATTCAGT-AAAAAAAAAAGAATGAAAAT
6794436 AAGAAAAAAAGTTAAAAAAG
644 AAG-AAAAAAGTTAAAAAAG
* * *
6794456 AAAAAAATGAGAATAGAAAAAAAATCAAAAAATAAGAAAATTCCAAATTATTATAAAAATTATAA
1 AAAAAAATGAGAATATAAAAAAAA-CCAAAAATAAGAAAATTCCAAATTATTATAAAAATTATTA
*
6794521 AAATATAAATAAAAAAGGAAAATACAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCT-
65 AAATATAAA-AAAAAA-GAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTA
* * *
6794585 --AAAA-AAATTGATATTAAAAGTTAACAAAAACAAAAAA-AAAATAGGTAAGAAAATGAAAAAG
128 AAAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAG
* * *
6794646 TAACGTTTCAAAAGAAAAAAAATAAAAAAAAAGACGGGAATAAAATTTTCAAAAATGACAAAGAA
193 TAACGTTTCAAAAGAAAAAAAAT--AAAAAAAGACAGGAATAAAAATTTCAAAAATGAAAAAGAA
6794711 TGACAAAATAGAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAGAA
256 TGACAAAATAGAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAGAA
* *
6794776 AAAAATGGTATGAAAAATCAAAGTTAAAA
321 AAAAAAGGTATGAAAAATCAAAGATAAAA
6794805 GAAAATTAAT
Statistics
Matches: 6229, Mismatches: 441, Indels: 458
0.87 0.06 0.06
Matches are distributed among these distances:
620 35 0.01
621 198 0.03
622 98 0.02
623 44 0.01
624 4 0.00
625 56 0.01
626 8 0.00
627 1 0.00
629 90 0.01
630 2 0.00
632 135 0.02
633 94 0.02
634 3 0.00
635 3 0.00
636 13 0.00
638 132 0.02
639 284 0.05
640 93 0.01
641 54 0.01
642 77 0.01
643 49 0.01
644 4 0.00
645 2 0.00
646 18 0.00
647 135 0.02
648 83 0.01
649 83 0.01
650 12 0.00
651 4 0.00
652 5 0.00
653 100 0.02
654 287 0.05
655 161 0.03
656 114 0.02
657 246 0.04
658 169 0.03
659 165 0.03
660 482 0.08
661 335 0.05
662 393 0.06
663 440 0.07
664 483 0.08
665 216 0.03
666 100 0.02
667 5 0.00
668 212 0.03
669 73 0.01
670 2 0.00
672 2 0.00
674 1 0.00
675 1 0.00
683 35 0.01
684 180 0.03
686 5 0.00
687 57 0.01
688 51 0.01
689 27 0.00
690 38 0.01
691 30 0.00
ACGTcount: A:0.66, C:0.05, G:0.12, T:0.17
Consensus pattern (662 bp):
AAAAAAATGAGAATATAAAAAAAACCAAAAATAAGAAAATTCCAAATTATTATAAAAATTATTAA
AATATAAAAAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTAAAA
AAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAGTAA
CGTTTCAAAAGAAAAAAAATAAAAAAAGACAGGAATAAAAATTTCAAAAATGAAAAAGAATGACA
AAATAGAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAGAAAAAAA
AGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATAAAAACAAAAA
GAAGTGCAAAAAAACCAAGTGTGAGATTAAAAATGTGTGCAAAAACAAATACAAGAAAAGCAAGA
AAAAATAAAAAAGGAAAAAAATAAAGATAAAAAGTAAAGAGAGTACGAAAAGAAAGAAAATAAAA
TATATGACAAATCAGATTGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAATTTAGTAAGA
GGAATAGAATGAAAAAAATGGAAGGAAAAGTATTCAGTAAAAAAAAAAGAATGAAAATAAGAAAA
AAGTTAAAAAAG
Found at i:6789048 original size:664 final size:661
Alignment explanation
Indices: 6787258--6794804 Score: 10346
Period size: 660 Copynumber: 11.5 Consensus size: 661
6787248 AAAAGTTAAA
* * * * *
6787258 AAAAAAATGAGAACACAAAAAAATCCAAAAATAAAAAAATTCCAAATTATTATAAAGATTATTAA
1 AAAAAAATGAGAATATAAAAAAAACCAAAAATAAGAAAATTCCAAATTATTATAAAAATTATTAA
6787323 AATATAAATAAAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAA-AAAGTGCTAA
66 AATAT-AA-AAAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTAA
*
6787387 AAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGCAAAAGT
129 AAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAGT
* * * *
6787452 AACGTTTCAAAAG-AAAAAAA-AAAGACA-A-ATGAATAAAATTTTCAAAAATGAAAAAGAATGA
194 AACGTTTCAAAAGAAAAAAAATAAAAAAAGACAGGAATAAAAATTTCAAAAATGAAAAAGAATGA
** *
6787513 CAAAATAGAAAAAAAATTAGTTTAGGTAAACAAAAATGAAAAAATATAACCAATAAGATGAAAAA
259 CAAAATAGAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAGAAAAA
*
6787578 AAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATGAAAACAAA
324 AAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATAAAAACAAA
*
6787643 AAGAAGTG---------C-------------AAAATGTGTGCAAAAACAAATACAAGAACAGCAA
389 AAGAAGTGCAAAAAAACCAAGTGTGAGATTAAAAATGTGTGCAAAAACAAATACAAGAAAAGCAA
* *
6787686 GAAAAAATAAAAAAGAAAAAAAAATAAAGATAAAAAGTAAAGAGAGTATGAAAAGAAAGAAAATA
454 GAAAAAAT-AAAAAG-GAAAAAAATAAAGATAAAAAGTAAAGAGAGTACGAAAAGAAAGAAAATA
* *
6787751 AAATATATGACAAATCAGATTGAAG--T--AAAAAAA--AAAGTAAAAAGCAAAATAATTTAGTC
517 AAATATATGACAAATCAGATTGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAATTTAGTA
* * *
6787810 AGAGGAATAGAATGAAAAAAATGGAAGCAAAAGTAATT-AGTGAAAAAAAAAGAATGAACATAAG
582 AGAGGAATAGAATGAAAAAAATGGAAGGAAAAGT-ATTCAGTAAAAAAAAAAGAATGAAAATAAG
*
6787874 AGAAAAGTTAAAAAAG
646 AAAAAAGTTAAAAAAG
* * *
6787890 AAAAAAAATGAGAATATAAAAAAATA-TAAAAATAAAAAAATTCCAAACTATTATAAAAATTATT
1 -AAAAAAATGAGAATATAAAAAAA-ACCAAAAATAAGAAAATTCCAAATTATTATAAAAATTATT
* *
6787954 AAAATAT-----------AAATAAAAATATTAAAGTAAAAGAAATAAAACAAAATAAAATGCTAA
64 AAAATATAAAAAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTAA
* *
6788008 AAAAAGAAAATGAAATTAAAAGTCATCAAAAACAAAAAATAAAATAGGTAAAAAAATGAAAAAGT
129 AAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAGT
* * *
6788073 AACGTTTCAAAAG-AAAAAAA-AAACACA-A-AGGAATAAAATTTTCAAAAATGAAAAAGAATGA
194 AACGTTTCAAAAGAAAAAAAATAAAAAAAGACAGGAATAAAAATTTCAAAAATGAAAAAGAATGA
6788134 CAAAATAGAAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAGAAAA
259 CAAAATAG-AAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAGAAAA
* * * *
6788199 AAATGGTAT-AAAAATCAAAGATAAAAAAGTAAAAAAAATTACAACAAAATAAAAATAAAAACAA
323 AAAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATAAAAACAA
* *
6788263 AAAAAAGTGCAAAAAAATCAAGTGTGAGATTAAAAATGTGTGCAAAAACAAATACAAGAAAAGCA
388 AAAGAAGTGCAAAAAAACCAAGTGTGAGATTAAAAATGTGTGCAAAAACAAATACAAGAAAAGCA
* *
6788328 AGAAAAAATAAAAAAGGAAAAAAATAAAGATAAAAAGTAAAGAGAATACGAAAAGAAAGAAAAGA
453 AGAAAAAAT-AAAAAGGAAAAAAATAAAGATAAAAAGTAAAGAGAGTACGAAAAGAAAGAAAATA
** * * *
6788393 AAATATATGTGAAACCAGAATGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAATATAGTA
517 AAATATATGACAAATCAGATTGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAATTTAGTA
* *
6788458 AAAGGAATAGAATGAAAAAAAATGGAAGTAAAAGTATTCAGTAAAAAAAAAAGAATGAAAATAAG
582 AGAGGAATAGAATG-AAAAAAATGGAAGGAAAAGTATTCAGTAAAAAAAAAAGAATGAAAATAAG
6788523 AAAAAAGTTAAAAAAG
646 AAAAAAGTTAAAAAAG
6788539 AAAAAAAATGAGAATATAAAAAAAA-CAAAAATAAGAAAATTCCAAATTATTATAAAAATTATTA
1 -AAAAAAATGAGAATATAAAAAAAACCAAAAATAAGAAAATTCCAAATTATTATAAAAATTATTA
*
6788603 AAATATAAAGAAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAACAAAATAAAGTGCTAA
65 AAATATAAA-AAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTAA
*
6788668 AAAAAGAAAA-GAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAAT
129 AAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAGT
* *
6788732 AATGTTTCAAAAGAAAAAAAATAAAAAAAGACAGGAATAAAAATTTCAAAAATGAAAAAGATTGA
194 AACGTTTCAAAAGAAAAAAAATAAAAAAAGACAGGAATAAAAATTTCAAAAATGAAAAAGAATGA
* ** * *
6788797 CAAAAGA-AAAAAAAATTAGTTTAGATTAACAAAAATAAAAAAAATAGAACCAATAAGAAGAAAA
259 CAAAATAGAAAAAAAATTAGTTTAGACAAACAAAAAT-GAAAAAATATAACCAATAAGAAGAAAA
* * *
6788861 AAAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAATTGCTACAAAATAAAAATAAAAACGA
323 AAAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATAAAAACAA
* *
6788926 AAGGAAGTGCAAAAAAAACCAAGTGTGAGATTAAAAATATGTGCAAAAACAAATACAAGAAAAGC
388 AAAGAAGTGC-AAAAAAACCAAGTGTGAGATTAAAAATGTGTGCAAAAACAAATACAAGAAAAGC
*
6788991 AAGAAAAAATAGAAAAGGAAAAAAATAAAGATAAAAAGTAAAGAGAGTACAAAAAGAAAGAAAAT
452 AAGAAAAAATA-AAAAGGAAAAAAATAAAGATAAAAAGTAAAGAGAGTACGAAAAGAAAGAAAAT
* * *
6789056 AAAATATATGACAAATCAAATTGTAGTATAAAAAAAAATCAAAGTAAAAAGGAAAACAATTTAGT
516 AAAATATATGACAAATCAGATTGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAATTTAGT
* * * * *
6789121 AAAAGAAATAGAATGAAAAAAAAGGAAGGAAAAGTATTCAGT-AAAAAAAAA-AATTAACATAAG
581 AAGAGGAATAGAATGAAAAAAATGGAAGGAAAAGTATTCAGTAAAAAAAAAAGAATGAAAATAAG
6789184 AAAAAAGTT-------
646 AAAAAAGTTAAAAAAG
6789193 AAAAAAATGAGAATATAAAAAAAATCCAAAAATAAGAAAATTCCAAATTATTATAAAAATTATTA
1 AAAAAAATGAGAATATAAAAAAAA-CCAAAAATAAGAAAATTCCAAATTATTATAAAAATTATTA
*
6789258 AAATATAAACAAAAAA-AAAATAAAAATATTAAAGTAAATGAAATAAAATAAAATAAAGTGCT-A
65 AAATATAAA-AAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTAA
* *
6789321 AAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATGAAATAGGTAATAAAATGAAAAAGT
129 AAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAGT
* * *
6789386 AACTTTTCAAAAGAAAAAAAATAAAAAAAGACAAAGCAAT-AAAATTTCCAAAAATGAAAAAGAG
194 AACGTTTCAAAAGAAAAAAAATAAAAAAAGAC--AGGAATAAAAATTT-CAAAAATGAAAAAGAA
*
6789450 TGATAAAATA-AAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAGAA
256 TGACAAAATAGAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAGAA
* * * *
6789514 AAAATAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAATTCCAACAAAATAAAAATAAAAAC
321 AAAAAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATAAAAAC
* * * * *
6789579 AAAAGGAACTGCAAAAAAACAAAGTGCGAGATTAAAAATGTGTGCAAAAACAAATACAAGAAAGG
386 AAAAAGAAGTGCAAAAAAACCAAGTGTGAGATTAAAAATGTGTGCAAAAACAAATACAAGAAAAG
* * *
6789644 TAAGAAAAAATAGAAAAGGAAAGAAATAAAGATAAAAAGTAAAGAGAGTACGAAAAAAAAGAAAA
451 CAAGAAAAAATA-AAAAGGAAAAAAATAAAGATAAAAAGTAAAGAGAGTACGAAAAGAAAGAAAA
6789709 TAAAATATATGACAAATCAGATTGAAGTAT-AAAAAAAATCAAAGTAAAAAGGAAAATAATTTAG
515 TAAAATATATGACAAATCAGATTGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAATTTAG
** * * *
6789773 TAAGACAAATAGAATGAAAAAAAATGGAAGGAAAAGTGTTTAGTTAAAAAAAAAGAAAAATATGA
580 TAAGAGGAATAGAATG-AAAAAAATGGAAGGAAAAGTATTCAG-T--AAAAAAA-AAAGA-ATGA
6789838 GAATATAAAAAAGTTAAAATATGAGAATATAAAAAAGTTAAAAG
639 -AA-AT----AAG--AAAA-A--AG--T-T----AA---AAAAG
*
6789882 AGAAAAATATGAGAATATAAAAAAAATCCAAAAATAAG-AAATTTCAAATTATTATAAAAATTAT
1 A-AAAAA-ATGAGAATATAAAAAAAA-CCAAAAATAAGAAAATTCCAAATTATTATAAAAATTAT
*
6789946 TAAAATAT-AAATAAAAG-AAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTA
63 TAAAATATAAAAAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTA
6790009 AAAAAAGAAAATGAAATTAAAAGT-AA-AAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAG
128 AAAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAG
* *
6790072 TAATGTTTCAAAAGAAAAAAAA-AAAAGACA-A-AGGAAT-AAAATTTCCAAAAATGAAAACA-A
193 TAACGTTTCAAAAGAAAAAAAATAAAA-AAAGACAGGAATAAAAATTT-CAAAAATGAAAA-AGA
*
6790132 ATGACAAAATAGAAAGAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAGA
255 ATGACAAAATAGAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAGA
* ** * *
6790197 AAAAAAAAGTACAAAAAATCAAAGATAAAAAATTAAAAAAAGTTGCTACAAAATAAAATTAAAAA
320 AAAAAAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATAAAAA
* * *
6790262 CAAAAGGAAGTGCAAAAAAACCAAGTGTGAGATTAAAAATATGTGCAAAAACAAATACAATAAAA
385 CAAAAAGAAGTGCAAAAAAACCAAGTGTGAGATTAAAAATGTGTGCAAAAACAAATACAAGAAAA
* *
6790327 GCAAGAAAAAAT-------------A-AAA-ATAAAAAGTAAAGAGTGTACGAAACGAAAGAAAA
450 GCAAGAAAAAATAAAAAGGAAAAAAATAAAGATAAAAAGTAAAGAGAGTACGAAAAGAAAGAAAA
* *
6790377 TAAAATATATGACAAATTAGATTGAAGTATAAAAAGAAATCAAAGTAAAAAGGAAAATAATTTAG
515 TAAAATATATGACAAATCAGATTGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAATTTAG
* * * *
6790442 TAAGAGGAATAGAATGAAAAAAAAGGAAGGAAAAGTATTTAGTAAAAAAAAAGGAATGAATATAA
580 TAAGAGGAATAGAATGAAAAAAATGGAAGGAAAAGTATTCAGTAAAAAAAAAAGAATGAAAATAA
6790507 GAAAAAAGTTAAAAAAG
645 GAAAAAAGTTAAAAAAG
* *
6790524 AAAAAAAATGAGAATATAAAAAAATA-TAAAAATAAGAAAATTCTAAATTATTATAAAAATTATT
1 -AAAAAAATGAGAATATAAAAAAA-ACCAAAAATAAGAAAATTCCAAATTATTATAAAAATTATT
*
6790588 AAAATAT--AAATAAA-AAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTAA
64 AAAATATAAAAAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTAA
6790650 AAAAAGAAAATGAAATTAAAAGTCAAC--AAA-AAAAAATAAAATAGGTAAGAAAATGAAAAAGT
129 AAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAGT
* * *
6790712 AACGTTTCAAAAGAAAAAAAA-AAAAGACA-A-AGGAATAAAATTTTCAAAAATTAAAAAGAATG
194 AACGTTTCAAAAGAAAAAAAATAAAA-AAAGACAGGAATAAAAATTTCAAAAATGAAAAAGAATG
6790774 ACAAAATAGAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAG-AAA
258 ACAAAATAGAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAGAAAA
* *
6790838 AAAAGTTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTATAAAATAAAAATAAAAACAA
323 AAAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATAAAAACAA
* *
6790903 AAAGAAGTGCAAAAAAACCAAGTGTCAGATTAAAAATGTGTGCAAAAACAAATACAAGAAATGCA
388 AAAGAAGTGCAAAAAAACCAAGTGTGAGATTAAAAATGTGTGCAAAAACAAATACAAGAAAAGCA
** * * *
6790968 AGAAAAAATAAAAAGGAAAAAAATGTATATAAAAAATAAAGAGAGCACG-AAA-AAA-AAAAT--
453 AGAAAAAATAAAAAGGAAAAAAATAAAGATAAAAAGTAAAGAGAGTACGAAAAGAAAGAAAATAA
*
6791028 -ATATATGACAAATCATATTGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAATTTAGTAA
518 AATATATGACAAATCAGATTGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAATTTAGTAA
6791092 GAGGAATAGAATGAAAAAAATGGAAGGAAAAGTATTCAGTAAAAAAAAAAGAATGAAAATAAGAA
583 GAGGAATAGAATGAAAAAAATGGAAGGAAAAGTATTCAGTAAAAAAAAAAGAATGAAAATAAGAA
*
6791157 AAAAGTTTAAAAAG
648 AAAAGTTAAAAAAG
*
6791171 AAAAAAATGAG--TAT-------A-TAAAAAT------A-TCCAAA--A--ATAAGAAA--A-T-
1 AAAAAAATGAGAATATAAAAAAAACCAAAAATAAGAAAATTCCAAATTATTATAA-AAATTATTA
* * * *
6791211 AAA-A-ACAAAAAAGGAAAATAAAAATATTAAGGTAAAAGAAATAAAATAAAATAAAGTG-TTAA
65 AAATATAAAAAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTAAA
* *
6791273 AAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATATGTGAGAAAATGAAAAAGTA
130 AAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAGTA
* *
6791338 ACATTTCAAAAGAAAAAAAATAAAAAAAGACAAAAGAATAAAAATTTCAAAAATGAAAAAGAATG
195 ACGTTTCAAAAGAAAAAAAATAAAAAAAGAC--AGGAATAAAAATTTCAAAAATGAAAAAGAATG
* * * * *
6791403 ACAAAATAGAAAGAAAATTAGTTTAGAGAAACAAAAATGAAAAAATTTAACCAACAAAAAGAAAA
258 ACAAAATAGAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAG--AA
6791468 AAAAAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATAAAAAC
321 AAAAAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATAAAAAC
* * * *
6791533 AAAATGAAGTGCCAAATAACCAAGTGTGAGATTAAAAATGTGTGCAAAAACAAATACAAGAAAAA
386 AAAAAGAAGTGCAAAAAAACCAAGTGTGAGATTAAAAATGTGTGCAAAAACAAATACAAGAAAAG
* * *
6791598 CAAGAAAAATTAAAAAAGATAAAAAATAAAGATAAAAAGTAAAAAGAGTACGAAAAGAAAGAAAA
451 CAAGAAAAAATAAAAAGGA-AAAAAATAAAGATAAAAAGTAAAGAGAGTACGAAAAGAAAGAAAA
* * * *
6791663 TAAAATATATGACCAATCAAATTGAAGTATAAAAAAAAATCAAAGGAAAAATGAAAATAATTT-G
515 TAAAATATATGACAAATCAGATTGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAATTTAG
* * *
6791727 ATAAGAGTAATAGGATGAAAAAAATGGAAGGAAAAGTATTCAGTAGAAAAAAAAGAATGAAAATA
580 -TAAGAGGAATAGAATGAAAAAAATGGAAGGAAAAGTATTCAGTAAAAAAAAAAGAATGAAAATA
**
6791792 AGAAAAAAGAAAAAAAAG
644 AGAAAAAAGTTAAAAAAG
* *
6791810 AAAAAAATGAGAATATAAAAAAAACCAAAAAATAAGAAAATTCTAAATTATTATGAAAATTATTA
1 AAAAAAATGAGAATATAAAAAAAACC-AAAAATAAGAAAATTCCAAATTATTATAAAAATTATTA
* * * * *
6791875 AAATAT-AAATAAAA-ATATTAAAAATATTAAAGTAAAAAAAATAAAACAAAATAAAGTGCTAAA
65 AAATATAAAAAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTAAA
* **
6791938 AAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAAAGAAAAAAAA
130 AAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATG-AAAAAGT
*
6792003 AACGTTTCAAAAGAAAAAAAATAAAAAAAAAGACAAAGGAATAAAATTTTCAAAAATGAAAAAGA
194 AACGTTTCAAAAGAAAAAAAAT--AAAAAAAGAC--AGGAATAAAAATTTCAAAAATGAAAAAGA
* * * * *
6792068 ATGACAAAAT-GAAAAAAAAATTAGTTTAGAGAAACACATATGAAAAAATATAAGCAATAAAAAG
255 ATGACAAAATAG-AAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAG
* *
6792132 AAAAAATAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACAACAAAATAAAAATAAAA
319 AAAAAAAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATAAAA
* * * *
6792197 ACAATAGGAAGTGAAAAAAAAAACCAAGTGTGAGATTAAAAATGTGTGCAAAAAACAAATATAAG
384 ACAAAAAGAAGTG--CAAAAAAACCAAGTGTGAGATTAAAAATGTGTGC-AAAAACAAATACAAG
* * * *
6792262 AAAAGC-AG--GAAA-AAAAAGGAAAAAAATAAAGATAAAAAGTAAAAAGAATACGAAAAAAAAG
446 AAAAGCAAGAAAAAATAAAAAGGAAAAAAATAAAGATAAAAAGTAAAGAGAGTACGAAAAGAAAG
* *
6792323 AAAAGAAAATATATGACAAATCAGATTGAAGTAT-AAAAAAAATCAAAGTAAAAATGAAAATAAT
511 AAAATAAAATATATGACAAATCAGATTGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAAT
6792387 TTAGTAAGAGGAATAGAATGAAAAAAATGGAAGGAAAAGTATTCAGTAAAAAAAAAAAGAATG-A
576 TTAGTAAGAGGAATAGAATGAAAAAAATGGAAGGAAAAGTATTCAGT-AAAAAAAAAAGAATGAA
*
6792451 AATAAGAAAAAAG-TGAAAAAG
640 AATAAGAAAAAAGTTAAAAAAG
* * * *
6792472 --AAAAA--A-AATATAAATAAAATCCAAAAATAATAAAATTCCAAATTGTTATGAAAATTATTA
1 AAAAAAATGAGAATATAAA-AAAAACCAAAAATAAGAAAATTCCAAATTATTATAAAAATTATTA
6792532 AAATATAAATAAAAAAGGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTA
65 AAATATAAA-AAAAAA-GAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTA
* *
6792597 AAAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATGAAATAGTTAAGAAAATGAAAAAG
128 AAAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAG
* * * * *
6792662 TAACATTTGAAAAGAAAAAAAATAAAAAAAGACAAATGAAT-AAAATTGTCAAAACTAAAAAAGA
193 TAACGTTTCAAAAGAAAAAAAATAAAAAAAGAC--AGGAATAAAAATT-TCAAAAATGAAAAAGA
* * * *
6792726 ATGAAAAAATAG-AAAAAAATTATTTTAGATAAACAAAAGTGAAAAAATATAACCAATAAGAAGA
255 ATGACAAAATAGAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAGA
* *
6792790 AAAAAAGGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAATTACTACAAAATAAAAATAAAAA
320 AAAAAAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATAAAAA
*
6792855 CAAAAAGAAGTGCAAAAAAAACCAAGTGTGAGATTAAAAATGTGTGCAAAAAACAAATATAAGAA
385 CAAAAAGAAGTGC-AAAAAAACCAAGTGTGAGATTAAAAATGTGTGC-AAAAACAAATACAAGAA
* *
6792920 AAGCAAGAAAAAATAAAAAAGAAAAAAATAAAGGA-AAAAAGTAGAAG-GAGTACGAAAAGAAAA
448 AAGCAAGAAAAAATAAAAAGGAAAAAAATAAA-GATAAAAAGTA-AAGAGAGTACGAAAAGAAAG
* * *
6792983 AAAATAAAATATATGACAAATCATATTGAAGTAT-AAAAAAAATCAAAGGAAAAAAGAAAATAAT
511 AAAATAAAATATATGACAAATCAGATTGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAAT
** * * * *
6793047 TTAGTAAGACAAATAGAATGAAAAAAATGAAAGGAAAAATATTCAGT--AAAAAAAA-TATGAAC
576 TTAGTAAGAGGAATAGAATGAAAAAAATGGAAGGAAAAGTATTCAGTAAAAAAAAAAGAATGAAA
6793109 ATAAGAAAAAAGTTAAAAAAG
641 ATAAGAAAAAAGTTAAAAAAG
6793130 -AAAAAATGAGAATATAAAAAAAATCCAAAAATAAGAAAATTCCAAATTATTATAAAAATTATTA
1 AAAAAAATGAGAATATAAAAAAAA-CCAAAAATAAGAAAATTCCAAATTATTATAAAAATTATTA
* * *
6793194 AAATAGAAATAAAAAAAGAAAATATAAATATTAAAGTAAAAGAAATAAAATAAACTAAAGTGCTA
65 AAATA-TAA-AAAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTA
6793259 AAAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAG
128 AAAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAG
* * *
6793324 TAACTTTTCAAAAGAAGAAAAATAAAAAAAAAACAAAGGAAT-AAAATTTCCAAAAATGAAAAAG
193 TAACGTTTCAAAAGAAAAAAAAT-AAAAAAAGAC--AGGAATAAAAATTT-CAAAAATGAAAAAG
6793388 AATGACAAAATAGAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAG
254 AATGACAAAATAGAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAG
* *
6793453 AAACAAAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTGCTACAAAA-AAAAA-AAAA
319 AAAAAAAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATAAAA
* * *
6793516 CCAAAAAGAAGTGCAAAAAAACCAAATGTGAGATTAAAAATATGTGCAAAAACAAATACAAGAAA
384 ACAAAAAGAAGTGCAAAAAAACCAAGTGTGAGATTAAAAATGTGTGCAAAAACAAATACAAGAAA
*
6793581 AGCAAGAAAAAATAAAAA-AATTAAAAAATAAAGATAAAAAGTAAAGAGAGTACGAAAAGAAAGA
449 AGCAAGAAAAAATAAAAAGGA--AAAAAATAAAGATAAAAAGTAAAGAGAGTACGAAAAGAAAGA
* * **
6793645 AAATAAAATATATGACAAATTAGATTGAAATATAAAAAAAAATCGGAGTAAAAA--AAAATAATT
512 AAATAAAATATATGACAAATCAGATTGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAATT
6793708 TAGTAAGAGGAATAGAATGAAAAAAATGGAAGGAAAAGTATTCAGTAAAGAAAAAAA-AATGAAA
577 TAGTAAGAGGAATAGAATGAAAAAAATGGAAGGAAAAGTATTCAGTAAA-AAAAAAAGAATGAAA
6793772 ATAAGAAAAAAGTTAAAAAAG
641 ATAAGAAAAAAGTTAAAAAAG
* * *
6793793 AAAAAAATAAGAATATAAAAAAAATCCAAAAATAAAAAAATTCCAAATTGTTATAAAAATTATTG
1 AAAAAAATGAGAATATAAAAAAAA-CCAAAAATAAGAAAATTCCAAATTATTATAAAAATTATT-
**
6793858 AACCTATAAATAAAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCT
64 AAAATAT-AA-AAAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCT
*
6793923 AAAAAAAGAAAATGAAATTAAAAGTCAATAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAA
127 AAAAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAA
* * *
6793988 GTAACGTTTCAAAGGAAAAAAAA-AAAGAAAA-AC--GAATAAAATTTTCAAAATTGAAAAAGAA
192 GTAACGTTTCAAAAGAAAAAAAATAAA-AAAAGACAGGAATAAAAATTTCAAAAATGAAAAAGAA
*
6794049 TGACAAAATAGAAAAAAAATTAGTTTAGACAAAC-AAAATGAAAAAATATAACAAATAAGAAGAA
256 TGACAAAATAGAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAGAA
* *
6794113 AGAAAAGGTATGAAAAATCAAAGATAAAAAATTTAAAAAAGTTACTACAAAATAAAAATAAAAAC
321 AAAAAAGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATAAAAAC
* * * *
6794178 AAAAAGAAGCGTAGAAAAACCAAGTGTGATATTAAAAATGTGTGCAAAAACAAATACAA-AAAAT
386 AAAAAGAAGTGCAAAAAAACCAAGTGTGAGATTAAAAATGTGTGCAAAAACAAATACAAGAAAA-
* * * * * *
6794242 GCAAGAAAAAATAAAAAAAGATAAAAATAAAGATAAAAAGCAAAGAGAGCAGGAAAAAAAAGAAA
450 GCAAGAAAAAAT-AAAAAGGAAAAAAATAAAGATAAAAAGTAAAGAGAGTACGAAAAGAAAGAAA
* * * *
6794307 ATAAAATGTATGACAAATCATATTGAAGTAT-AAAAAAAATTAAAGTAAAAAGGAAAGTAATTTA
514 ATAAAATATATGACAAATCAGATTGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAATTTA
* *
6794371 GTAAAAGGAATAGAATGAAAAAATTGGAAGGAAAAGTATTCAGTAAAAAAAAAAAGAATGAAAAT
579 GTAAGAGGAATAGAATGAAAAAAATGGAAGGAAAAGTATTCAGT-AAAAAAAAAAGAATGAAAAT
6794436 AAGAAAAAAAGTTAAAAAAG
643 AAG-AAAAAAGTTAAAAAAG
* * *
6794456 AAAAAAATGAGAATAGAAAAAAAATCAAAAAATAAGAAAATTCCAAATTATTATAAAAATTATAA
1 AAAAAAATGAGAATATAAAAAAAA-CCAAAAATAAGAAAATTCCAAATTATTATAAAAATTATTA
*
6794521 AAATATAAATAAAAAAGGAAAATACAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCT-
65 AAATATAAA-AAAAAA-GAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTA
* * *
6794585 --AAAA-AAATTGATATTAAAAGTTAACAAAAACAAAAAA-AAAATAGGTAAGAAAATGAAAAAG
128 AAAAAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAG
* * *
6794646 TAACGTTTCAAAAGAAAAAAAATAAAAAAAAAGACGGGAATAAAATTTTCAAAAATGACAAAGAA
193 TAACGTTTCAAAAGAAAAAAAAT--AAAAAAAGACAGGAATAAAAATTTCAAAAATGAAAAAGAA
6794711 TGACAAAATAGAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAGAA
256 TGACAAAATAGAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAGAA
* *
6794776 AAAAATGGTATGAAAAATCAAAGTTAAAA
321 AAAAAAGGTATGAAAAATCAAAGATAAAA
6794805 GAAAATTAAT
Statistics
Matches: 6228, Mismatches: 441, Indels: 460
0.87 0.06 0.06
Matches are distributed among these distances:
620 35 0.01
621 198 0.03
622 98 0.02
623 44 0.01
624 4 0.00
625 56 0.01
626 8 0.00
627 1 0.00
629 90 0.01
630 2 0.00
632 140 0.02
633 89 0.01
634 3 0.00
635 3 0.00
636 13 0.00
638 132 0.02
639 284 0.05
640 93 0.01
641 54 0.01
642 77 0.01
643 49 0.01
644 4 0.00
645 2 0.00
646 18 0.00
647 135 0.02
648 83 0.01
649 83 0.01
650 12 0.00
651 4 0.00
652 5 0.00
653 100 0.02
654 287 0.05
655 161 0.03
656 114 0.02
657 246 0.04
658 169 0.03
659 169 0.03
660 477 0.08
661 334 0.05
662 394 0.06
663 441 0.07
664 476 0.08
665 220 0.04
666 102 0.02
667 5 0.00
668 212 0.03
669 73 0.01
670 2 0.00
672 2 0.00
674 1 0.00
675 1 0.00
683 35 0.01
684 180 0.03
686 5 0.00
687 57 0.01
688 51 0.01
689 27 0.00
690 38 0.01
691 30 0.00
ACGTcount: A:0.66, C:0.05, G:0.12, T:0.17
Consensus pattern (661 bp):
AAAAAAATGAGAATATAAAAAAAACCAAAAATAAGAAAATTCCAAATTATTATAAAAATTATTAA
AATATAAAAAAAAAGAAAATAAAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCTAAAA
AAAGAAAATGAAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAGTAA
CGTTTCAAAAGAAAAAAAATAAAAAAAGACAGGAATAAAAATTTCAAAAATGAAAAAGAATGACA
AAATAGAAAAAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAGAAAAAAA
AGGTATGAAAAATCAAAGATAAAAAATTAAAAAAAGTTACTACAAAATAAAAATAAAAACAAAAA
GAAGTGCAAAAAAACCAAGTGTGAGATTAAAAATGTGTGCAAAAACAAATACAAGAAAAGCAAGA
AAAAATAAAAAGGAAAAAAATAAAGATAAAAAGTAAAGAGAGTACGAAAAGAAAGAAAATAAAAT
ATATGACAAATCAGATTGAAGTATAAAAAAAAATCAAAGTAAAAAGGAAAATAATTTAGTAAGAG
GAATAGAATGAAAAAAATGGAAGGAAAAGTATTCAGTAAAAAAAAAAGAATGAAAATAAGAAAAA
AGTTAAAAAAG
Found at i:6789874 original size:24 final size:24
Alignment explanation
Indices: 6789821--6789880 Score: 104
Period size: 24 Copynumber: 2.5 Consensus size: 24
6789811 TTTAGTTAAA
*
6789821 AAAAAAG-AAAAATATGAGAATAT
1 AAAAAAGTTAAAATATGAGAATAT
6789844 AAAAAAGTTAAAATATGAGAATAT
1 AAAAAAGTTAAAATATGAGAATAT
6789868 AAAAAAGTTAAAA
1 AAAAAAGTTAAAA
6789881 GAGAAAAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
23 7 0.20
24 28 0.80
ACGTcount: A:0.68, C:0.00, G:0.12, T:0.20
Consensus pattern (24 bp):
AAAAAAGTTAAAATATGAGAATAT
Found at i:6789891 original size:24 final size:24
Alignment explanation
Indices: 6789821--6789887 Score: 75
Period size: 24 Copynumber: 2.9 Consensus size: 24
6789811 TTTAGTTAAA
* * *
6789821 AAAAAAG-AAAAATATGAGAATAT
1 AAAAAAGTTAAAAGATGAAAATAT
* *
6789844 AAAAAAGTTAAAATATGAGAATAT
1 AAAAAAGTTAAAAGATGAAAATAT
6789868 AAAAAAGTTAAAAGA-GAAAA
1 AAAAAAGTTAAAAGATGAAAA
6789888 ATATGAGAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
23 11 0.28
24 29 0.73
ACGTcount: A:0.69, C:0.00, G:0.13, T:0.18
Consensus pattern (24 bp):
AAAAAAGTTAAAAGATGAAAATAT
Found at i:6789986 original size:23 final size:21
Alignment explanation
Indices: 6789947--6790002 Score: 80
Period size: 22 Copynumber: 2.7 Consensus size: 21
6789937 AAAAATTATT
6789947 AAAATATAAATAAAAGAAATA
1 AAAATATAAATAAAAGAAATA
6789968 AAAATATTAAAGTAAAAGAAAT-
1 AAAATA-TAAA-TAAAAGAAATA
6789990 AAAATA-AAATAAA
1 AAAATATAAATAAA
6790003 GTGCTAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.12
20 3 0.09
21 6 0.18
22 10 0.30
23 10 0.30
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.20
Consensus pattern (21 bp):
AAAATATAAATAAAAGAAATA
Found at i:6790010 original size:27 final size:24
Alignment explanation
Indices: 6789946--6790053 Score: 76
Period size: 23 Copynumber: 4.3 Consensus size: 24
6789936 TAAAAATTAT
*
6789946 TAAAATATAAATAAAAGAAATAAAA
1 TAAAATA-AAGTAAAAGAAATAAAA
* *
6789971 -ATATTAAAGTAAAAGAAATAAAA
1 TAAAATAAAGTAAAAGAAATAAAA
*
6789994 TAAAATAAAGTGCTAAAA-AAAGAAAA
1 TAAAATAAA--G-TAAAAGAAATAAAA
* * *
6790020 TGAAATTAAAAGTAAAAAAACAAAAAA
1 T-AAAAT-AAAGTAAAAGAA-ATAAAA
6790047 TAAAATA
1 TAAAATA
6790054 GGTAAGAAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 16
0.73 0.10 0.18
Matches are distributed among these distances:
23 16 0.24
24 10 0.15
25 6 0.09
26 16 0.24
27 15 0.23
28 3 0.05
ACGTcount: A:0.72, C:0.02, G:0.07, T:0.19
Consensus pattern (24 bp):
TAAAATAAAGTAAAAGAAATAAAA
Found at i:6790602 original size:20 final size:20
Alignment explanation
Indices: 6790585--6790642 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
6790575 TATAAAAATT
6790585 ATTAAAATATAAATAAAAAA
1 ATTAAAATATAAATAAAAAA
*
6790605 ATAAAAATATTAAAGTAAAAGAA
1 ATTAAAATA-TAAA-TAAAA-AA
6790628 A-TAAAATA-AAATAAA
1 ATTAAAATATAAATAAA
6790643 GTGCTAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
19 4 0.12
20 11 0.33
21 4 0.12
22 11 0.33
23 3 0.09
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.22
Consensus pattern (20 bp):
ATTAAAATATAAATAAAAAA
Found at i:6790610 original size:28 final size:28
Alignment explanation
Indices: 6790579--6790639 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
6790569 AATTATTATA
*
6790579 AAAATTATTAAAATATAAATAAA-AAAAT
1 AAAATTATTAAAATA-AAAGAAATAAAAT
* *
6790607 AAAAATATTAAAGTAAAAGAAATAAAAT
1 AAAATTATTAAAATAAAAGAAATAAAAT
6790635 AAAAT
1 AAAAT
6790640 AAAGTGCTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 6 0.21
28 22 0.79
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (28 bp):
AAAATTATTAAAATAAAAGAAATAAAAT
Done.