Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14313602
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 50000 characters in sequence are not A, C, G, or T
File 31 of 74
Found at i:6790623 original size:14 final size:14
Alignment explanation
Indices: 6790576--6790638 Score: 56
Period size: 14 Copynumber: 4.4 Consensus size: 14
6790566 CTAAATTATT
6790576 ATAAAAATTATTAAA
1 ATAAAAA-TATTAAA
* **
6790591 ATATAAATAAAAAA
1 ATAAAAATATTAAA
6790605 ATAAAAATATTAAA
1 ATAAAAATATTAAA
* *
6790619 GTAAAAGA-AATAAA
1 ATAAAA-ATATTAAA
6790633 ATAAAA
1 ATAAAA
6790639 TAAAGTGCTA
Statistics
Matches: 38, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
14 31 0.82
15 7 0.18
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (14 bp):
ATAAAAATATTAAA
Found at i:6790634 original size:22 final size:19
Alignment explanation
Indices: 6790587--6790642 Score: 69
Period size: 22 Copynumber: 2.8 Consensus size: 19
6790577 TAAAAATTAT
6790587 TAAAATATAAATAAAAAAA
1 TAAAATATAAATAAAAAAA
6790606 TAAAAATATTAAAGTAAAAGAAA
1 T-AAAATA-TAAA-TAAAA-AAA
6790629 TAAAATA-AAATAAA
1 TAAAATATAAATAAA
6790643 GTGCTAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
19 5 0.15
20 9 0.27
21 4 0.12
22 11 0.33
23 4 0.12
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.21
Consensus pattern (19 bp):
TAAAATATAAATAAAAAAA
Found at i:6790897 original size:34 final size:34
Alignment explanation
Indices: 6790835--6790899 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
6790825 CAATAAGAAG
*
6790835 AAAAAAAGTTATGAAAAATCAAAGATAAAAAATT
1 AAAAAAAGTTATGAAAAATCAAAAATAAAAAATT
6790869 AAAAAAAGTTACT-ATAAAAT-AAAAATAAAAA
1 AAAAAAAGTTA-TGA-AAAATCAAAAATAAAAA
6790900 CAAAAAGAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
34 22 0.79
35 6 0.21
ACGTcount: A:0.71, C:0.03, G:0.06, T:0.20
Consensus pattern (34 bp):
AAAAAAAGTTATGAAAAATCAAAAATAAAAAATT
Found at i:6791367 original size:17 final size:18
Alignment explanation
Indices: 6791345--6791381 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
6791335 GTAACATTTC
6791345 AAAAGA-AAAAAAATAAA
1 AAAAGACAAAAAAATAAA
*
6791362 AAAAGACAAAAGAATAAA
1 AAAAGACAAAAAAATAAA
6791380 AA
1 AA
6791382 TTTCAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.84, C:0.03, G:0.08, T:0.05
Consensus pattern (18 bp):
AAAAGACAAAAAAATAAA
Found at i:6791389 original size:25 final size:26
Alignment explanation
Indices: 6791344--6791410 Score: 68
Period size: 25 Copynumber: 2.7 Consensus size: 26
6791334 AGTAACATTT
6791344 CAAAAGAA-AAAAAATAAAAAAA-GA
1 CAAAAGAATAAAAAATAAAAAAATGA
* **
6791368 CAAAAGAATAAAAATTTCAAAAATGA
1 CAAAAGAATAAAAAATAAAAAAATGA
*
6791394 -AAAAGAATGACAAAATA
1 CAAAAGAAT-AAAAAATA
6791411 GAAAGAAAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
24 8 0.24
25 19 0.56
26 7 0.21
ACGTcount: A:0.73, C:0.06, G:0.09, T:0.12
Consensus pattern (26 bp):
CAAAAGAATAAAAAATAAAAAAATGA
Found at i:6791797 original size:19 final size:16
Alignment explanation
Indices: 6791775--6791815 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 16
6791765 TTCAGTAGAA
6791775 AAAAAAGAATGAAAATAAG
1 AAAAAAGAA--AAAA-AAG
6791794 AAAAAAGAAAAAAAAG
1 AAAAAAGAAAAAAAAG
6791810 AAAAAA
1 AAAAAA
6791816 ATGAGAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 9 0.41
17 4 0.18
19 9 0.41
ACGTcount: A:0.83, C:0.00, G:0.12, T:0.05
Consensus pattern (16 bp):
AAAAAAGAAAAAAAAG
Found at i:6791810 original size:16 final size:18
Alignment explanation
Indices: 6791775--6791849 Score: 61
Period size: 18 Copynumber: 4.2 Consensus size: 18
6791765 TTCAGTAGAA
6791775 AAAAAAGAATGAAAATAAG
1 AAAAAAGAA-GAAAATAAG
6791794 AAAAAAGAA-AAAA-AAG
1 AAAAAAGAAGAAAATAAG
*
6791810 AAAAAA-ATGAGAATATAA-
1 AAAAAAGA--AGAAAATAAG
*
6791828 AAAAAACCAA-AAAATAAG
1 AAAAAA-GAAGAAAATAAG
6791846 AAAA
1 AAAA
6791850 TTCTAAATTA
Statistics
Matches: 47, Mismatches: 2, Indels: 15
0.73 0.03 0.23
Matches are distributed among these distances:
15 1 0.02
16 9 0.19
17 11 0.23
18 14 0.30
19 11 0.23
20 1 0.02
ACGTcount: A:0.79, C:0.03, G:0.11, T:0.08
Consensus pattern (18 bp):
AAAAAAGAAGAAAATAAG
Found at i:6791822 original size:11 final size:9
Alignment explanation
Indices: 6791771--6791816 Score: 56
Period size: 9 Copynumber: 5.0 Consensus size: 9
6791761 AGTATTCAGT
6791771 AGAAAAAAA
1 AGAAAAAAA
**
6791780 AGAATGAAA
1 AGAAAAAAA
*
6791789 ATAAGAAAAA
1 AGAA-AAAAA
6791799 AGAAAAAAA
1 AGAAAAAAA
6791808 AGAAAAAAA
1 AGAAAAAAA
6791817 TGAGAATATA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
9 24 0.80
10 6 0.20
ACGTcount: A:0.83, C:0.00, G:0.13, T:0.04
Consensus pattern (9 bp):
AGAAAAAAA
Found at i:6791889 original size:21 final size:23
Alignment explanation
Indices: 6791865--6791912 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 23
6791855 AATTATTATG
*
6791865 AAAATTATT-AAAATA-TAAA-T
1 AAAAATATTAAAAATATTAAAGT
6791885 AAAAATATTAAAAATATTAAAGT
1 AAAAATATTAAAAATATTAAAGT
6791908 AAAAA
1 AAAAA
6791913 AAATAAAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 8 0.33
21 6 0.25
22 4 0.17
23 6 0.25
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (23 bp):
AAAAATATTAAAAATATTAAAGT
Found at i:6791919 original size:23 final size:21
Alignment explanation
Indices: 6791874--6791920 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 21
6791864 GAAAATTATT
* *
6791874 AAAATATAAATAAAAATATTA
1 AAAATATAAATAAAAAAAATA
6791895 AAAATATTAAAGTAAAAAAAATA
1 AAAATA-TAAA-TAAAAAAAATA
6791918 AAA
1 AAA
6791921 CAAAATAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 6 0.27
22 4 0.18
23 12 0.55
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (21 bp):
AAAATATAAATAAAAAAAATA
Found at i:6792298 original size:22 final size:22
Alignment explanation
Indices: 6792270--6792333 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
6792260 AGAAAAGCAG
*
6792270 GAAAAAAAAGGAAAAAAATAAA
1 GAAAAAAAAGAAAAAAAATAAA
* * *
6792292 G-ATAAAAAGTAAAAAGAAT-AC
1 GAAAAAAAAG-AAAAAAAATAAA
6792313 GAAAAAAAAGAAAAGAAAATA
1 GAAAAAAAAGAAAA-AAAATA
6792334 TATGACAAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 7
0.71 0.13 0.16
Matches are distributed among these distances:
21 13 0.41
22 19 0.59
ACGTcount: A:0.77, C:0.02, G:0.14, T:0.08
Consensus pattern (22 bp):
GAAAAAAAAGAAAAAAAATAAA
Found at i:6792319 original size:21 final size:21
Alignment explanation
Indices: 6792272--6792326 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
6792262 AAAAGCAGGA
6792272 AAAAAAAGGAAAAAAATAAAG
1 AAAAAAAGGAAAAAAATAAAG
* * *
6792293 ATAAAAAGTAAAAAGAAT-ACG
1 AAAAAAAGGAAAAA-AATAAAG
*
6792314 AAAAAAAAGAAAA
1 AAAAAAAGGAAAA
6792327 GAAAATATAT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
21 24 0.89
22 3 0.11
ACGTcount: A:0.78, C:0.02, G:0.13, T:0.07
Consensus pattern (21 bp):
AAAAAAAGGAAAAAAATAAAG
Found at i:6792474 original size:15 final size:16
Alignment explanation
Indices: 6792434--6792477 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
6792424 AGTATTCAGT
6792434 AAAAA-AAAAAAGAATG
1 AAAAAGAAAAAAG-ATG
6792450 AAATAAGAAAAAAG-TG
1 AAA-AAGAAAAAAGATG
6792466 AAAAAGAAAAAA
1 AAAAAGAAAAAA
6792478 AATATAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
15 9 0.35
16 8 0.31
17 2 0.08
18 7 0.27
ACGTcount: A:0.80, C:0.00, G:0.14, T:0.07
Consensus pattern (16 bp):
AAAAAGAAAAAAGATG
Found at i:6792478 original size:16 final size:16
Alignment explanation
Indices: 6792434--6792480 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
6792424 AGTATTCAGT
6792434 AAAAA-AAAAAAGAATG
1 AAAAAGAAAAAA-AATG
*
6792450 AAATAAG-AAAAAAGTG
1 AAA-AAGAAAAAAAATG
6792466 AAAAAGAAAAAAAAT
1 AAAAAGAAAAAAAAT
6792481 ATAAATAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
15 3 0.12
16 16 0.62
17 7 0.27
ACGTcount: A:0.79, C:0.00, G:0.13, T:0.09
Consensus pattern (16 bp):
AAAAAGAAAAAAAATG
Found at i:6792572 original size:19 final size:19
Alignment explanation
Indices: 6792530--6792572 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
6792520 TGAAAATTAT
*
6792530 TAAAATATAAATAAAAAAG
1 TAAAATAAAAATAAAAAAG
* **
6792549 GAAAATAAAAATATTAAAG
1 TAAAATAAAAATAAAAAAG
6792568 TAAAA
1 TAAAA
6792573 GAAATAAAAT
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.21
Consensus pattern (19 bp):
TAAAATAAAAATAAAAAAG
Found at i:6793780 original size:17 final size:16
Alignment explanation
Indices: 6793760--6793817 Score: 57
Period size: 17 Copynumber: 3.5 Consensus size: 16
6793750 CAGTAAAGAA
6793760 AAAAAAATGAAAATAAG
1 AAAAAAAT-AAAATAAG
*
6793777 AAAAAAGTTAAAA-AAG
1 AAAAAA-ATAAAATAAG
6793793 AAAAAAATAAGAATATA-
1 AAAAAAATAA-AATA-AG
6793810 AAAAAAAT
1 AAAAAAAT
6793818 CCAAAAATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
15 3 0.09
16 11 0.31
17 19 0.54
18 2 0.06
ACGTcount: A:0.78, C:0.00, G:0.09, T:0.14
Consensus pattern (16 bp):
AAAAAAATAAAATAAG
Found at i:6793827 original size:17 final size:17
Alignment explanation
Indices: 6793807--6793839 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
6793797 AAATAAGAAT
6793807 ATAAAAAAAATCCAAAA
1 ATAAAAAAAATCCAAAA
*
6793824 ATAAAAAAATTCCAAA
1 ATAAAAAAAATCCAAA
6793840 TTGTTATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.73, C:0.12, G:0.00, T:0.15
Consensus pattern (17 bp):
ATAAAAAAAATCCAAAA
Found at i:6794245 original size:21 final size:20
Alignment explanation
Indices: 6794220--6794260 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
6794210 TAAAAATGTG
6794220 TGCAA-AAACAAATACAAAAAA
1 TGCAAGAAA-AAATA-AAAAAA
6794241 TGCAAGAAAAAATAAAAAAA
1 TGCAAGAAAAAATAAAAAAA
6794261 GATAAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.32
21 10 0.53
22 3 0.16
ACGTcount: A:0.73, C:0.10, G:0.07, T:0.10
Consensus pattern (20 bp):
TGCAAGAAAAAATAAAAAAA
Found at i:6794442 original size:20 final size:17
Alignment explanation
Indices: 6794415--6794478 Score: 62
Period size: 16 Copynumber: 3.8 Consensus size: 17
6794405 AGTATTCAGT
6794415 AAAAAA-AAAAAGAA-TG
1 AAAAAAGAAAAA-AAGTG
*
6794431 AAAATAAGAAAAAAAGTT
1 AAAA-AAGAAAAAAAGTG
6794449 AAAAAAGAAAAAAA-TG
1 AAAAAAGAAAAAAAGTG
* *
6794465 AGAATAGAAAAAAA
1 AAAAAAGAAAAAAA
6794479 ATCAAAAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
16 17 0.41
17 14 0.34
18 10 0.24
ACGTcount: A:0.78, C:0.00, G:0.12, T:0.09
Consensus pattern (17 bp):
AAAAAAGAAAAAAAGTG
Found at i:6794453 original size:33 final size:33
Alignment explanation
Indices: 6794415--6794496 Score: 94
Period size: 33 Copynumber: 2.5 Consensus size: 33
6794405 AGTATTCAGT
* *
6794415 AAAAAA-AAAAAGAATGAAAATAAGAAAAAAAGTT
1 AAAAAAGAAAAA-AATGAAAAT-AGAAAAAAAATC
*
6794449 AAAAAAGAAAAAAATGAGAATAGAAAAAAAATC
1 AAAAAAGAAAAAAATGAAAATAGAAAAAAAATC
* *
6794482 AAAAAATAAGAAAAT
1 AAAAAAGAAAAAAAT
6794497 TCCAAATTAT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
33 23 0.55
34 14 0.33
35 5 0.12
ACGTcount: A:0.77, C:0.01, G:0.11, T:0.11
Consensus pattern (33 bp):
AAAAAAGAAAAAAATGAAAATAGAAAAAAAATC
Found at i:6794456 original size:17 final size:16
Alignment explanation
Indices: 6794414--6794497 Score: 62
Period size: 17 Copynumber: 5.1 Consensus size: 16
6794404 AAGTATTCAG
6794414 TAAAAAA-AAAAAGAAT
1 TAAAAAAGAAAAA-AAT
*
6794430 GAAAATAAGAAAAAAAGT
1 TAAAA-AAGAAAAAAA-T
6794448 TAAAAAAGAAAAAAAT
1 TAAAAAAGAAAAAAAT
* * *
6794464 GAGAATAGAAAAAAAAT
1 TAAAAAAG-AAAAAAAT
* * *
6794481 CAAAAAATAAGAAAAT
1 TAAAAAAGAAAAAAAT
6794497 T
1 T
6794498 CCAAATTATT
Statistics
Matches: 53, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
16 17 0.32
17 26 0.49
18 10 0.19
ACGTcount: A:0.75, C:0.01, G:0.11, T:0.13
Consensus pattern (16 bp):
TAAAAAAGAAAAAAAT
Found at i:6794888 original size:19 final size:19
Alignment explanation
Indices: 6794866--6794941 Score: 63
Period size: 19 Copynumber: 4.2 Consensus size: 19
6794856 TTTAGTAAAA
6794866 AAAAAAGAATGAAAATAAG
1 AAAAAAGAATGAAAATAAG
*
6794885 AAAAAAG--TTAAAA-AAG
1 AAAAAAGAATGAAAATAAG
*
6794901 AAAAAA-AATGAGAATATA-
1 AAAAAAGAATGAAAATA-AG
* **
6794919 AAAAAAGTACAAAAATAAG
1 AAAAAAGAATGAAAATAAG
6794938 AAAA
1 AAAA
6794942 TTTCAAATTA
Statistics
Matches: 44, Mismatches: 7, Indels: 12
0.70 0.11 0.19
Matches are distributed among these distances:
16 9 0.20
17 9 0.20
18 8 0.18
19 18 0.41
ACGTcount: A:0.75, C:0.01, G:0.12, T:0.12
Consensus pattern (19 bp):
AAAAAAGAATGAAAATAAG
Found at i:6794933 original size:34 final size:33
Alignment explanation
Indices: 6794862--6794926 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 33
6794852 AGTATTTAGT
*
6794862 AAAAAAAAAAGAATGAAAATAAGAAAAAAGTTA
1 AAAAAAAAAAAAATGAAAATAAGAAAAAAGTTA
*
6794895 AAAAAGAAAAAAAATGAGAATATA-AAAAAAGT
1 AAAAA-AAAAAAAATGAAAATA-AGAAAAAAGT
6794927 ACAAAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 5 0.18
34 22 0.79
35 1 0.04
ACGTcount: A:0.75, C:0.00, G:0.12, T:0.12
Consensus pattern (33 bp):
AAAAAAAAAAAAATGAAAATAAGAAAAAAGTTA
Found at i:6794951 original size:446 final size:449
Alignment explanation
Indices: 6794341--6795254 Score: 1477
Period size: 446 Copynumber: 2.0 Consensus size: 449
6794331 GAAGTATAAA
* * * * * *
6794341 AAAAATTAAAGTAAAAAGGAAAGTAATTTAGTAAAAGGAATAGAATGAAAAAATTGGAAGGAAAA
1 AAAAATCAAAGTTAAAAGAAAAGTAATATAGTAAAAGGAATAAAATGAAAAAAATGGAAGGAAAA
6794406 GTATTCAGTAAAAAAAAAAAGAATGAAAATAAGAAAAAAAGTTAAAAAAGAAAAAAATGAGAATA
66 GTATTCAGTAAAAAAAAAAAGAATGAAAATAAGAAAAAAAGTTAAAAAAGAAAAAAATGAGAATA
6794471 GAAAAAAAATCAAAAAATAAGAAAATTCCAAATTATTATAAAAATTATAAAAATATAAATAAAAA
131 GAAAAAAAATCAAAAAATAAGAAAATTCCAAATTATTATAAAAATTATAAAAATATAAATAAAAA
* * * *
6794536 AGGAAAATACAAATATTAAAGTAAAAGAAATAAAATAAAATAAAGTGCT-AAAA-AAATTGATAT
196 AAGAAAATACAAATATTAAAGTAAAAGAAATAAAACAAAATAAAGTGCTAAAAAGAAAATGAAAT
*
6794599 TAAAAGTTAACAAAAACAAAAAA-AAAATAGGTAAGAAAATGAAAAAGTAACGTTTCAAAAGA-A
261 TAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAGTAACGTTTCAAAAGATA
*
6794662 AAAAA-ATAAAAAAAAAGACGGGAATAAAATTTTCAAAAATGACAAAGAATGACAAAATAG-AAA
326 AAAAATATAAAAAAAAA-AC--GAATAAAATTTTCAAAAATGAAAAAGAATGACAAAATAGAAAA
* *
6794725 AAAAATTAGTTTAGACAAACAAAAATGAAAAAATATAACCAATAAGAAGAAAAAAATGGTATG
388 AAAAATT-GTTTAGACAAACAAAAATGAAAAAATATAACAAATAAGAAGAAAAAAAAGGTATG
*
6794788 AAAAATCAAAGTTAAAAGAAAATTAATATAGTAAAAGGAATAAAATGAAAAAAATGGAAGGAAAA
1 AAAAATCAAAGTTAAAAGAAAAGTAATATAGTAAAAGGAATAAAATGAAAAAAATGGAAGGAAAA
*
6794853 GTATTTAGT-AAAAAAAAAAGAATGAAAATAAG-AAAAAAGTTAAAAAAGAAAAAAAATGAGAAT
66 GTATTCAGTAAAAAAAAAAAGAATGAAAATAAGAAAAAAAGTTAAAAAAG-AAAAAAATGAGAAT
* * * *
6794916 ATAAAAAAAGT-ACAAAAATAAGAAAATTTCAAATTATTATAAAAATTATTAAAATATAAATAAA
130 AGAAAAAAAATCA-AAAAATAAGAAAATTCCAAATTATTATAAAAATTATAAAAATATAAATAAA
*
6794980 AAAAGAAAATATAAATATTAAAGTAAAAGAAATAAAACAAAATAAAGTGCTAAAAAAAGAAAATG
194 AAAAGAAAATACAAATATTAAAGTAAAAGAAATAAAACAAAATAAAGTGCT--AAAAAGAAAATG
*
6795045 AAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAGTAACGTTTCAGAA
257 AAATTAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAGTAACGTTTCAAAA
6795110 GATAAAAAATATAAAAAAAAAACGAATAAAATTTTCAAAAATGAAAAAGAATGACAAAATAGAAA
322 GATAAAAAATATAAAAAAAAAACGAATAAAATTTTCAAAAATGAAAAAGAATGACAAAATAGAAA
*
6795175 AAAAAATTGTTTAGATAAACAAAAATGAAAAAATATAACAAATAAGAAGAAAAAAAAGGTATG
387 AAAAAATTGTTTAGACAAACAAAAATGAAAAAATATAACAAATAAGAAGAAAAAAAAGGTATG
*
6795238 AAAAATCAAAGATAAAA
1 AAAAATCAAAGTTAAAA
6795255 AATTAAAAAA
Statistics
Matches: 433, Mismatches: 24, Indels: 17
0.91 0.05 0.04
Matches are distributed among these distances:
445 17 0.04
446 143 0.33
447 66 0.15
449 4 0.01
450 136 0.31
451 48 0.11
452 8 0.02
453 11 0.03
ACGTcount: A:0.66, C:0.04, G:0.12, T:0.18
Consensus pattern (449 bp):
AAAAATCAAAGTTAAAAGAAAAGTAATATAGTAAAAGGAATAAAATGAAAAAAATGGAAGGAAAA
GTATTCAGTAAAAAAAAAAAGAATGAAAATAAGAAAAAAAGTTAAAAAAGAAAAAAATGAGAATA
GAAAAAAAATCAAAAAATAAGAAAATTCCAAATTATTATAAAAATTATAAAAATATAAATAAAAA
AAGAAAATACAAATATTAAAGTAAAAGAAATAAAACAAAATAAAGTGCTAAAAAGAAAATGAAAT
TAAAAGTCAACAAAAACAAAAAATAAAATAGGTAAGAAAATGAAAAAGTAACGTTTCAAAAGATA
AAAAATATAAAAAAAAAACGAATAAAATTTTCAAAAATGAAAAAGAATGACAAAATAGAAAAAAA
AATTGTTTAGACAAACAAAAATGAAAAAATATAACAAATAAGAAGAAAAAAAAGGTATG
Found at i:6795627 original size:18 final size:17
Alignment explanation
Indices: 6795606--6795639 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
6795596 AGAAAATGCA
6795606 TAAAAAATAAAAAAAAGC
1 TAAAAAA-AAAAAAAAGC
*
6795624 TAAAAAAAAAGAAAAG
1 TAAAAAAAAAAAAAAG
6795640 GGAAATAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.79, C:0.03, G:0.09, T:0.09
Consensus pattern (17 bp):
TAAAAAAAAAAAAAAGC
Found at i:6799118 original size:152 final size:152
Alignment explanation
Indices: 6798842--6799122 Score: 472
Period size: 152 Copynumber: 1.8 Consensus size: 152
6798832 TTCAAAGAAT
6798842 CAGCAAAAGGAAATAATCTTCCTTTTTAAGCATTCAACCACAATGCATGTCAAAATTAAGTTGCA
1 CAGCAAAAGGAAATAATCTTCCTTTTTAAGCATTCAACCACAATGCATGTCAAAATTAAGTTGCA
6798907 GAAATAGAACATAACAAACCAATCTGTCTTGTAACAAACAGAGTGAAACCAACAAAACAAAAAAA
66 GAAATAGAACATAACAAACCAATCTGTCTTGTAACAAACAGAGTGAAACCAACAAAACAAAAAAA
6798972 CAGAGTAAAAATTTAAAAAATC
131 CAGAGTAAAAATTTAAAAAATC
* ** **
6798994 CAGCAAAAGGAAATAATCTTCGTTTTTAAGCATTTGACCACAATGCATGTCAAAATTAAGTTTTA
1 CAGCAAAAGGAAATAATCTTCCTTTTTAAGCATTCAACCACAATGCATGTCAAAATTAAGTTGCA
* * * * *
6799059 GAAATGGAACCTAGCAAACCAATCTGTCTTGTAACAAATAGAGTGAAAGCAACAAAACAAAAAA
66 GAAATAGAACATAACAAACCAATCTGTCTTGTAACAAACAGAGTGAAACCAACAAAACAAAAAA
6799123 CTCTCAAATA
Statistics
Matches: 119, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
152 119 1.00
ACGTcount: A:0.48, C:0.17, G:0.13, T:0.22
Consensus pattern (152 bp):
CAGCAAAAGGAAATAATCTTCCTTTTTAAGCATTCAACCACAATGCATGTCAAAATTAAGTTGCA
GAAATAGAACATAACAAACCAATCTGTCTTGTAACAAACAGAGTGAAACCAACAAAACAAAAAAA
CAGAGTAAAAATTTAAAAAATC
Found at i:6802843 original size:81 final size:81
Alignment explanation
Indices: 6802750--6802916 Score: 289
Period size: 81 Copynumber: 2.1 Consensus size: 81
6802740 GGGCTCCAAC
* * *
6802750 ATAAATAAAAAATAAAGGATATTAAATTGCAATGATCACTTCATAAAAAGACGAGCCATTGTTCA
1 ATAAATAAAAAATAAAGGATATTAAATTACAACGATCACTTCATAAAAAGACAAGCCATTGTTCA
6802815 CCAAAAACATAGACCA
66 CCAAAAACATAGACCA
*
6802831 ATAAATAAAAAATAAAGGATATTAAATTACGACGATCACTTCATAAAAAGACAAGCCATTGTTCA
1 ATAAATAAAAAATAAAGGATATTAAATTACAACGATCACTTCATAAAAAGACAAGCCATTGTTCA
*
6802896 CCAAAAACATAGACTA
66 CCAAAAACATAGACCA
6802912 ATAAA
1 ATAAA
6802917 ACCAGTAGAT
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.52, C:0.16, G:0.10, T:0.22
Consensus pattern (81 bp):
ATAAATAAAAAATAAAGGATATTAAATTACAACGATCACTTCATAAAAAGACAAGCCATTGTTCA
CCAAAAACATAGACCA
Found at i:6806562 original size:106 final size:106
Alignment explanation
Indices: 6806377--6806588 Score: 354
Period size: 106 Copynumber: 2.0 Consensus size: 106
6806367 AGTTTCTTTA
* *
6806377 CTTCAAGAACATATCCGCAGGCAACAAGTGAAAAAAGAGAGGAGAAAACAAGAGAAGGGGCTTCC
1 CTTCAAGAACATATCCACAGGCAACAAGTCAAAAAAGAGAGGAGAAAACAAGAGAAGGGGCTTCC
6806442 TCACAAACCACTAGCTGACAATTAAATATTAGC-TCTAGTTG
66 TCACAAACCACTAGCTGACAATTAAATATTA-CTTCTAGTTG
* * *
6806483 CTTCAAGAACATATCCACAGGCAGCAAGTCAAAAAAGAGAGGAGAAAATAAGAGATGGGGCTTCC
1 CTTCAAGAACATATCCACAGGCAACAAGTCAAAAAAGAGAGGAGAAAACAAGAGAAGGGGCTTCC
*
6806548 TCACAAACCACTAGCTGACAATTAAATGTTACTTCTAGTTG
66 TCACAAACCACTAGCTGACAATTAAATATTACTTCTAGTTG
6806589 GCAAACCACA
Statistics
Matches: 99, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
105 1 0.01
106 98 0.99
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.19
Consensus pattern (106 bp):
CTTCAAGAACATATCCACAGGCAACAAGTCAAAAAAGAGAGGAGAAAACAAGAGAAGGGGCTTCC
TCACAAACCACTAGCTGACAATTAAATATTACTTCTAGTTG
Found at i:6811295 original size:232 final size:232
Alignment explanation
Indices: 6810889--6811349 Score: 922
Period size: 232 Copynumber: 2.0 Consensus size: 232
6810879 TTTAAGAAAA
6810889 TTCCAAGAACTTCTCCAAAAGATAGTAAAAAGGTTCATCAAGAAACAATAGCCATGTACCAAAAA
1 TTCCAAGAACTTCTCCAAAAGATAGTAAAAAGGTTCATCAAGAAACAATAGCCATGTACCAAAAA
6810954 CCCTAAAACCTAAGAAAGGAGGTCATATGCCAGCCCAATGCCCATCAAGACTTAAGGTCCACAAA
66 CCCTAAAACCTAAGAAAGGAGGTCATATGCCAGCCCAATGCCCATCAAGACTTAAGGTCCACAAA
6811019 GAAAAACTAGTATGCATTTTAAATGAATGTCTATCAACTTTGCTCAGTTTAGTGCAAAACAATAT
131 GAAAAACTAGTATGCATTTTAAATGAATGTCTATCAACTTTGCTCAGTTTAGTGCAAAACAATAT
6811084 ATTCAATCAAGCTCAGTATCATAGAAAGTGATAACTC
196 ATTCAATCAAGCTCAGTATCATAGAAAGTGATAACTC
6811121 TTCCAAGAACTTCTCCAAAAGATAGTAAAAAGGTTCATCAAGAAACAATAGCCATGTACCAAAAA
1 TTCCAAGAACTTCTCCAAAAGATAGTAAAAAGGTTCATCAAGAAACAATAGCCATGTACCAAAAA
6811186 CCCTAAAACCTAAGAAAGGAGGTCATATGCCAGCCCAATGCCCATCAAGACTTAAGGTCCACAAA
66 CCCTAAAACCTAAGAAAGGAGGTCATATGCCAGCCCAATGCCCATCAAGACTTAAGGTCCACAAA
6811251 GAAAAACTAGTATGCATTTTAAATGAATGTCTATCAACTTTGCTCAGTTTAGTGCAAAACAATAT
131 GAAAAACTAGTATGCATTTTAAATGAATGTCTATCAACTTTGCTCAGTTTAGTGCAAAACAATAT
6811316 ATTCAATCAAGCTCAGTATCATAGAAAGTGATAA
196 ATTCAATCAAGCTCAGTATCATAGAAAGTGATAA
6811350 GTCTCTTACA
Statistics
Matches: 229, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
232 229 1.00
ACGTcount: A:0.42, C:0.20, G:0.14, T:0.24
Consensus pattern (232 bp):
TTCCAAGAACTTCTCCAAAAGATAGTAAAAAGGTTCATCAAGAAACAATAGCCATGTACCAAAAA
CCCTAAAACCTAAGAAAGGAGGTCATATGCCAGCCCAATGCCCATCAAGACTTAAGGTCCACAAA
GAAAAACTAGTATGCATTTTAAATGAATGTCTATCAACTTTGCTCAGTTTAGTGCAAAACAATAT
ATTCAATCAAGCTCAGTATCATAGAAAGTGATAACTC
Found at i:6824101 original size:23 final size:23
Alignment explanation
Indices: 6824057--6824117 Score: 63
Period size: 23 Copynumber: 2.7 Consensus size: 23
6824047 AAATAGTTGT
6824057 GAAAGAATGCAAAAAAAAAAAAGA
1 GAAA-AATGCAAAAAAAAAAAAGA
*
6824081 GAAAAATG-AAAAGAAATAAAAGA
1 GAAAAATGCAAAA-AAAAAAAAGA
* *
6824104 -AAAAGTGGAAAAAA
1 GAAAAATGCAAAAAA
6824118 TCTTTGATTG
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
22 12 0.36
23 17 0.52
24 4 0.12
ACGTcount: A:0.74, C:0.02, G:0.18, T:0.07
Consensus pattern (23 bp):
GAAAAATGCAAAAAAAAAAAAGA
Found at i:6824118 original size:21 final size:22
Alignment explanation
Indices: 6824057--6824118 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 22
6824047 AAATAGTTGT
*
6824057 GAAAGAATGCAAAAAAAAAAAAGA
1 GAAA-AATG-AAAAAAATAAAAGA
6824081 GAAAAATGAAAAGAAATAAAAGA
1 GAAAAATGAAAA-AAATAAAAGA
* *
6824104 -AAAAGTGGAAAAAAT
1 GAAAAATGAAAAAAAT
6824119 CTTTGATTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
21 4 0.12
22 13 0.38
23 13 0.38
24 4 0.12
ACGTcount: A:0.73, C:0.02, G:0.18, T:0.08
Consensus pattern (22 bp):
GAAAAATGAAAAAAATAAAAGA
Found at i:6824691 original size:29 final size:29
Alignment explanation
Indices: 6824611--6824736 Score: 74
Period size: 29 Copynumber: 4.6 Consensus size: 29
6824601 AAGAAAGAGG
* *
6824611 AAAAGG-AAAAAATGGAAAAGAAT-AAGA
1 AAAAGGAAAAAAATGAAAAAAAATGAAGA
* * *
6824638 ATAAA--TAAAAAAT--AAATAAAGGAAGA
1 A-AAAGGAAAAAAATGAAAAAAAATGAAGA
6824664 AAAAGGAAAAAAATGAAAAAAAATGAAGA
1 AAAAGGAAAAAAATGAAAAAAAATGAAGA
* * *
6824693 GAAA-TAACAAAA-GAAAAGAAAAATG-A-A
1 AAAAGGAAAAAAATG-AAA-AAAAATGAAGA
*
6824720 AAAGGGAAAAAAATGAA
1 AAAAGGAAAAAAATGAA
6824737 TGATTGAGCG
Statistics
Matches: 75, Mismatches: 13, Indels: 21
0.69 0.12 0.19
Matches are distributed among these distances:
25 8 0.11
26 5 0.07
27 19 0.25
28 21 0.28
29 22 0.29
ACGTcount: A:0.73, C:0.01, G:0.17, T:0.09
Consensus pattern (29 bp):
AAAAGGAAAAAAATGAAAAAAAATGAAGA
Found at i:6825771 original size:18 final size:18
Alignment explanation
Indices: 6825732--6825772 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
6825722 ATTCAAGAAA
*
6825732 GAAAAGATAATTTTCATT
1 GAAAAGATAATGTTCATT
6825750 -AAAAGATTAATGTT-ATT
1 GAAAAGA-TAATGTTCATT
6825767 GAAAAG
1 GAAAAG
6825773 GAAAGAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.49, C:0.02, G:0.15, T:0.34
Consensus pattern (18 bp):
GAAAAGATAATGTTCATT
Found at i:6826525 original size:21 final size:22
Alignment explanation
Indices: 6826481--6826527 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
6826471 AGATAAGATG
*
6826481 TTTTGAAACAAAGAATGAAAAA
1 TTTTAAAACAAAGAATGAAAAA
6826503 TTTTAAAACAAA-AAGTG-AAAA
1 TTTTAAAACAAAGAA-TGAAAAA
6826524 TTTT
1 TTTT
6826528 GAAATGAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.55, C:0.04, G:0.11, T:0.30
Consensus pattern (22 bp):
TTTTAAAACAAAGAATGAAAAA
Found at i:6826956 original size:41 final size:40
Alignment explanation
Indices: 6826723--6826966 Score: 176
Period size: 40 Copynumber: 6.0 Consensus size: 40
6826713 AATTTCTAAA
* * * *
6826723 TTTTAAATGATTTTCAAAAACCTCCAAACAAAA-TCTCAAAT
1 TTTTAAATGATTTTC-AAGACCTTCGAGCAAAACT-TCAAAT
* * * *
6826764 TTCTAATTGATTTTCAAGATCTTCGGGCAAAATCTT-AAAT
1 TTTTAAATGATTTTCAAGACCTTCGAGCAAAA-CTTCAAAT
* * * *
6826804 CTTTAAATGATCTCCAAGACC-TCTGAGCAAAACTTTAAAT
1 TTTTAAATGATTTTCAAGACCTTC-GAGCAAAACTTCAAAT
* * * * *
6826844 TATTAAATGATTTTCAAAGACCTTCAAGTAAAATTTTAAAAT
1 TTTTAAATGATTTTC-AAGACCTTCGAGCAAAA-CTTCAAAT
* * *
6826886 TTTGAAA-GATTTTCAAG-GCTTACGGGCAAAACTTCAAAT
1 TTTTAAATGATTTTCAAGACCTT-CGAGCAAAACTTCAAAT
*
6826925 TTTTAAATGACTTCTCAAGACCTTCGAGCAAAGA-TTCAAAT
1 TTTTAAATGA-TTTTCAAGACCTTCGAGCAAA-ACTTCAAAT
6826966 T
1 T
6826967 ATTCATAAGT
Statistics
Matches: 156, Mismatches: 35, Indels: 24
0.73 0.16 0.11
Matches are distributed among these distances:
39 20 0.13
40 63 0.40
41 55 0.35
42 18 0.12
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (40 bp):
TTTTAAATGATTTTCAAGACCTTCGAGCAAAACTTCAAAT
Found at i:6827428 original size:16 final size:17
Alignment explanation
Indices: 6827394--6827459 Score: 53
Period size: 17 Copynumber: 3.8 Consensus size: 17
6827384 CAAGTTCATT
6827394 AATTAAAAAAAACCAAA
1 AATTAAAAAAAACCAAA
* *
6827411 AATTAAGAAAATCC-AA
1 AATTAAAAAAAACCAAA
*
6827427 AATAAAAAACAAAACACAAA
1 AAT-TAAAA-AAAAC-CAAA
* *
6827447 AAATACAAAAAAC
1 AATTAAAAAAAAC
6827460 AACATAAAAA
Statistics
Matches: 37, Mismatches: 8, Indels: 7
0.71 0.15 0.13
Matches are distributed among these distances:
16 5 0.14
17 15 0.41
18 9 0.24
19 4 0.11
20 4 0.11
ACGTcount: A:0.74, C:0.14, G:0.02, T:0.11
Consensus pattern (17 bp):
AATTAAAAAAAACCAAA
Found at i:6827449 original size:21 final size:21
Alignment explanation
Indices: 6827425--6827470 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
6827415 AAGAAAATCC
6827425 AAAATA-AAAAACAAAACACAA
1 AAAATACAAAAA-AAAACACAA
* *
6827446 AAAATACAAAAAACAACATAA
1 AAAATACAAAAAAAAACACAA
6827467 AAAA
1 AAAA
6827471 CTTTTGAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.80, C:0.13, G:0.00, T:0.07
Consensus pattern (21 bp):
AAAATACAAAAAAAAACACAA
Found at i:6833126 original size:15 final size:15
Alignment explanation
Indices: 6833095--6833128 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
6833085 ACACTTCTTA
6833095 ATTTTTTAAATTCAT
1 ATTTTTTAAATTCAT
6833110 ATTTTGTTAAATT-AT
1 ATTTT-TTAAATTCAT
6833125 ATTT
1 ATTT
6833129 AAGGAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (15 bp):
ATTTTTTAAATTCAT
Found at i:6836956 original size:27 final size:29
Alignment explanation
Indices: 6836926--6837001 Score: 79
Period size: 27 Copynumber: 2.7 Consensus size: 29
6836916 GTGATGAATA
* *
6836926 AATAATTTTTTAAATTT-TATATTA-ATT
1 AATAAATTTTTAAATTTAAATATTATATT
*
6836953 AATAAATTTAT-AATTTAAATATTATATT
1 AATAAATTTTTAAATTTAAATATTATATT
*
6836981 AA-AAACTTTTAAAATTTAAAT
1 AATAAA-TTTTTAAATTTAAAT
6837002 TTAGTGTCAT
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
26 5 0.12
27 18 0.45
28 8 0.20
29 9 0.22
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (29 bp):
AATAAATTTTTAAATTTAAATATTATATT
Found at i:6837001 original size:29 final size:27
Alignment explanation
Indices: 6836944--6837001 Score: 73
Period size: 29 Copynumber: 2.1 Consensus size: 27
6836934 TTTAAATTTT
*
6836944 ATATTAATTAATAAATTTATAATTTAA
1 ATATTAATTAATAAATTTAAAATTTAA
6836971 ATATTATATTAA-AAACTTTTAAAATTTAA
1 ATATTA-ATTAATAAA--TTTAAAATTTAA
6837000 AT
1 AT
6837002 TTAGTGTCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
27 9 0.33
28 5 0.19
29 13 0.48
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (27 bp):
ATATTAATTAATAAATTTAAAATTTAA
Found at i:6837376 original size:7 final size:7
Alignment explanation
Indices: 6837362--6837420 Score: 60
Period size: 7 Copynumber: 9.3 Consensus size: 7
6837352 TATGAAATAC
6837362 ATAT-AA
1 ATATAAA
6837368 ATATAAA
1 ATATAAA
6837375 ATATAAA
1 ATATAAA
6837382 ATATAATA
1 ATATAA-A
6837390 A-A-AAA
1 ATATAAA
6837395 AT-TAAA
1 ATATAAA
6837401 A-AT--A
1 ATATAAA
6837405 ATATAAA
1 ATATAAA
6837412 ATATAAA
1 ATATAAA
6837419 AT
1 AT
6837421 GAAATACAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 15
0.75 0.00 0.25
Matches are distributed among these distances:
4 2 0.04
5 4 0.09
6 11 0.24
7 26 0.58
8 2 0.04
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
ATATAAA
Found at i:6837405 original size:18 final size:21
Alignment explanation
Indices: 6837362--6837440 Score: 73
Period size: 20 Copynumber: 4.0 Consensus size: 21
6837352 TATGAAATAC
*
6837362 ATATAA-ATATAAAATATAAA
1 ATATAATATAAAAAATATAAA
6837382 ATATAATA-AAAAAAT-TAAA
1 ATATAATATAAAAAATATAAA
6837401 A-ATAATAT--AAAATATAAA
1 ATATAATATAAAAAATATAAA
* *
6837419 ATGA-AATACAAAAAATAAAAA
1 AT-ATAATATAAAAAATATAAA
6837440 A
1 A
6837441 AAATTGAATA
Statistics
Matches: 49, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
17 5 0.10
18 11 0.22
19 9 0.18
20 13 0.27
21 11 0.22
ACGTcount: A:0.73, C:0.01, G:0.01, T:0.24
Consensus pattern (21 bp):
ATATAATATAAAAAATATAAA
Found at i:6837413 original size:37 final size:38
Alignment explanation
Indices: 6837367--6837440 Score: 116
Period size: 37 Copynumber: 2.0 Consensus size: 38
6837357 AATACATATA
*
6837367 AATATAAAATATAAAAT-ATAATA-AAAAAATTAAAAAT
1 AATATAAAATATAAAATGA-AATACAAAAAATAAAAAAT
6837404 AATATAAAATATAAAATGAAATACAAAAAATAAAAAA
1 AATATAAAATATAAAATGAAATACAAAAAATAAAAAA
6837441 AAATTGAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
37 21 0.62
38 13 0.38
ACGTcount: A:0.74, C:0.01, G:0.01, T:0.23
Consensus pattern (38 bp):
AATATAAAATATAAAATGAAATACAAAAAATAAAAAAT
Found at i:6837414 original size:25 final size:27
Alignment explanation
Indices: 6837366--6837419 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 27
6837356 AAATACATAT
*
6837366 AAATATAAAATATAAAATATAATAAAA
1 AAATATAAAATATAAAATAAAATAAAA
* *
6837393 AAAT-TAAAA-ATAATATAAAATATAA
1 AAATATAAAATATAAAATAAAATAAAA
6837418 AA
1 AA
6837420 TGAAATACAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 15 0.62
26 5 0.21
27 4 0.17
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (27 bp):
AAATATAAAATATAAAATAAAATAAAA
Found at i:6837444 original size:19 final size:19
Alignment explanation
Indices: 6837366--6837462 Score: 72
Period size: 19 Copynumber: 5.1 Consensus size: 19
6837356 AAATACATAT
* *
6837366 AAATATAAAATATAAAATA
1 AAATATAAAAAATAAAAAA
* *
6837385 TAATA-AAAAAATTAAAAA
1 AAATATAAAAAATAAAAAA
* * **
6837403 TAATATAAAATATAAAATG
1 AAATATAAAAAATAAAAAA
*
6837422 AAATACAAAAAATAAAAAA
1 AAATATAAAAAATAAAAAA
*
6837441 AAAT-TGAATAAAACAAAAAA
1 AAATAT-AA-AAAATAAAAAA
6837461 AA
1 AA
6837463 TCGAGGATGG
Statistics
Matches: 60, Mismatches: 15, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
18 15 0.25
19 33 0.55
20 12 0.20
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.21
Consensus pattern (19 bp):
AAATATAAAAAATAAAAAA
Found at i:6838409 original size:13 final size:13
Alignment explanation
Indices: 6838391--6838425 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
6838381 CCAAACTAAG
*
6838391 TCGAACCGTCGGA
1 TCGAACCGTCGAA
6838404 TCGAACCGTCGAA
1 TCGAACCGTCGAA
*
6838417 CCGAACCGT
1 TCGAACCGT
6838426 GTGTTGACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.26, C:0.34, G:0.26, T:0.14
Consensus pattern (13 bp):
TCGAACCGTCGAA
Found at i:6838616 original size:5 final size:5
Alignment explanation
Indices: 6838608--6838650 Score: 52
Period size: 5 Copynumber: 8.6 Consensus size: 5
6838598 AATAAACTTA
* *
6838608 AAAAT AAAAT AAAAC AACAA- AAAAT AAAAT AATAT AAAAT AAA
1 AAAAT AAAAT AAAAT AA-AAT AAAAT AAAAT AAAAT AAAAT AAA
6838651 TTTAATAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
4 2 0.06
5 29 0.88
6 2 0.06
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:6838656 original size:16 final size:15
Alignment explanation
Indices: 6838611--6838680 Score: 59
Period size: 15 Copynumber: 4.5 Consensus size: 15
6838601 AAACTTAAAA
* *
6838611 ATAAAATAAAACAAC
1 ATAAAATAAAATAAT
*
6838626 AAAAAATAAAATAAT
1 ATAAAATAAAATAAT
*
6838641 ATAAAATAAATTTAAT
1 ATAAAATAAA-ATAAT
*
6838657 AATAATACTAAAATAAT
1 -ATAA-AATAAAATAAT
*
6838674 AAAAAAT
1 ATAAAAT
6838681 GAGAGAAAAC
Statistics
Matches: 43, Mismatches: 9, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
15 23 0.53
16 7 0.16
17 8 0.19
18 5 0.12
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.24
Consensus pattern (15 bp):
ATAAAATAAAATAAT
Found at i:6838673 original size:11 final size:10
Alignment explanation
Indices: 6838631--6838680 Score: 55
Period size: 11 Copynumber: 4.7 Consensus size: 10
6838621 ACAACAAAAA
6838631 ATAAAATAAT
1 ATAAAATAAT
6838641 ATAAAATAAAT
1 ATAAAAT-AAT
*
6838652 TTAATAATAAT
1 ATAA-AATAAT
6838663 ACTAAAATAAT
1 A-TAAAATAAT
*
6838674 AAAAAAT
1 ATAAAAT
6838681 GAGAGAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
10 12 0.35
11 16 0.47
12 6 0.18
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (10 bp):
ATAAAATAAT
Found at i:6850025 original size:8 final size:8
Alignment explanation
Indices: 6850012--6850044 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
6850002 TTTGCTTGAA
6850012 AAAAAAAT
1 AAAAAAAT
6850020 AAAAAAAT
1 AAAAAAAT
6850028 -AAAAAAT
1 AAAAAAAT
6850035 AAAAAAAT
1 AAAAAAAT
6850043 AA
1 AA
6850045 TGACTCATCT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 7 0.29
8 17 0.71
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAAAAT
Found at i:6850031 original size:15 final size:15
Alignment explanation
Indices: 6850013--6850044 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
6850003 TTGCTTGAAA
6850013 AAAAAATAAAAAAAT
1 AAAAAATAAAAAAAT
6850028 AAAAAATAAAAAAAT
1 AAAAAATAAAAAAAT
6850043 AA
1 AA
6850045 TGACTCATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (15 bp):
AAAAAATAAAAAAAT
Found at i:6850892 original size:49 final size:48
Alignment explanation
Indices: 6850835--6851397 Score: 522
Period size: 49 Copynumber: 11.5 Consensus size: 48
6850825 CAAGGATAAG
* *
6850835 GCCTCTGCTGAGATGAGCCATTTCAAAGATGAGATTTTAAAGTTGTTAA
1 GCCTCTGCTGAGATGAGCCTTTTCAAA-ATGAGATTTTAAAGTTGTTGA
* * *
6850884 GCCTCTGCTAAGAGGAGCCATTTCAAAGATGAGATTTTAAAGTTGTTGA
1 GCCTCTGCTGAGATGAGCCTTTTCAAA-ATGAGATTTTAAAGTTGTTGA
* * *
6850933 GCTTCTGCTGAGAGGAGCCCTTTTCTAAATGAGATTTTAAAGTTGTTGA
1 GCCTCTGCTGAGATGAG-CCTTTTCAAAATGAGATTTTAAAGTTGTTGA
* * *
6850982 GCTTCTGCTGAGAGGAGTCTTTTTTCAAAATGAGATTTTAAAGTTGTTGA
1 GCCTCTGCTGAGATGAG-C-CTTTTCAAAATGAGATTTTAAAGTTGTTGA
* * * **
6851032 GCCTCTACTGAGATGAGCCATTTCCAAGATGAGATTTTAAAGTCATTGA
1 GCCTCTGCTGAGATGAGCC-TTTTCAAAATGAGATTTTAAAGTTGTTGA
* * * * * *
6851081 GCCTCTACTAAAATGAGCTTTTTTC-AAATGAGATTTTTAAAATTGTTAA
1 GCCTCTGCTGAGATGAGC-CTTTTCAAAATGAGA-TTTTAAAGTTGTTGA
* * **
6851130 GCCTCTACTGAGAGGAGTTTTTTCCAAAATGAGATTTTTAAAGTTGTTGA
1 GCCTCTGCTGAGATGAGCCTTTT-CAAAATGAGA-TTTTAAAGTTGTTGA
* * * * * *
6851180 GCCTATGCTAAGAGGAGCTTTTTTC-ATATGAGATTTTTAAAGTTGTTAA
1 GCCTCTGCTGAGATGAGC-CTTTTCAAAATGAGA-TTTTAAAGTTGTTGA
* * * * * *
6851229 GCTTCTGCCTGAGATGAGCCATTTCTAAGATGAAATTTTAAAGTCGTTAA
1 GCCTCTG-CTGAGATGAGCCTTTTC-AAAATGAGATTTTAAAGTTGTTGA
* * * *
6851279 ACCTCTGTTGAGATAAG-CTTTTCCAAATGAGATTTTTAAAGTTGTTGA
1 GCCTCTGCTGAGATGAGCCTTTTCAAAATGAGA-TTTTAAAGTTGTTGA
* * *
6851327 GCCTCTGTTGAGATGAG-CTTTTTAAAATGAAATTTTTAAAGTTGTTGA
1 GCCTCTGCTGAGATGAGCCTTTTCAAAATGAGA-TTTTAAAGTTGTTGA
** *
6851375 GCCTCTATTGAGATGAGTCTTTT
1 GCCTCTGCTGAGATGAGCCTTTT
6851398 TCAGATTTTA
Statistics
Matches: 437, Mismatches: 64, Indels: 26
0.83 0.12 0.05
Matches are distributed among these distances:
47 6 0.01
48 89 0.20
49 216 0.49
50 115 0.26
51 11 0.03
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.37
Consensus pattern (48 bp):
GCCTCTGCTGAGATGAGCCTTTTCAAAATGAGATTTTAAAGTTGTTGA
Found at i:6851203 original size:197 final size:196
Alignment explanation
Indices: 6850835--6851378 Score: 684
Period size: 197 Copynumber: 2.8 Consensus size: 196
6850825 CAAGGATAAG
* * *
6850835 GCCTCTGCTGAGATGAGCCATTTCAAAGATGAGATTTTAAAGTTGTTAAGCCTCTGCTAAGAGGA
1 GCCTCTACTGAGATGAGCCATTTCAAAGATGAGATTTTAAAGTCGTTAAGCCTCTGCTAAGATGA
** * * *
6850900 GCCATTTCAAAGATGAGA-TTTTAAAGTTGTTGAGCTTCTGCTGAGAGGAGCCCTTTTCTAAATG
66 GCTTTTTC-AA-ATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTTCAAAATG
* * *
6850964 AGA-TTTTAAAGTTGTTGAGCTTCTGCTGAGAGGAGTCTTTTTTCAAAATGAGA-TTTTAAAGTT
128 AGATTTTTAAAGTTGTTGAGCCTATGCTAAGAGGAGTCTTTTTTC-AAATGAGATTTTTAAAGTT
*
6851027 GTTGA
192 GTTAA
* * * * *
6851032 GCCTCTACTGAGATGAGCCATTTCCAAGATGAGATTTTAAAGTCATTGAGCCTCTACTAAAATGA
1 GCCTCTACTGAGATGAGCCATTTCAAAGATGAGATTTTAAAGTCGTTAAGCCTCTGCTAAGATGA
* * * *
6851097 GCTTTTTTCAAATGAGATTTTTAAAATTGTTAAGCCTCTACTGAGAGGAGTTTTTTCCAAAATGA
66 GC-TTTTTCAAATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTT-CAAAATGA
*
6851162 GATTTTTAAAGTTGTTGAGCCTATGCTAAGAGGAG-CTTTTTTCATATGAGATTTTTAAAGTTGT
129 GATTTTTAAAGTTGTTGAGCCTATGCTAAGAGGAGTCTTTTTTCAAATGAGATTTTTAAAGTTGT
6851226 TAA
194 TAA
* * * * * * * *
6851229 GCTTCTGCCTGAGATGAGCCATTTCTAAGATGAAATTTTAAAGTCGTTAAACCTCTGTTGAGATA
1 GCCTCT-ACTGAGATGAGCCATTTCAAAGATGAGATTTTAAAGTCGTTAAGCCTCTGCTAAGATG
* * * *
6851294 AGCTTTTCCAAATGAGATTTTTAAAGTTGTTGAGCCTCTGTTGAGATGAGCTTTTT-AAAATGAA
65 AGCTTTTTCAAATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAAATGAG
6851358 ATTTTTAAAGTTGTTGAGCCT
130 ATTTTTAAAGTTGTTGAGCCT
6851379 CTATTGAGAT
Statistics
Matches: 299, Mismatches: 42, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
195 28 0.09
196 17 0.06
197 171 0.57
198 83 0.28
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.37
Consensus pattern (196 bp):
GCCTCTACTGAGATGAGCCATTTCAAAGATGAGATTTTAAAGTCGTTAAGCCTCTGCTAAGATGA
GCTTTTTCAAATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAAATGAGA
TTTTTAAAGTTGTTGAGCCTATGCTAAGAGGAGTCTTTTTTCAAATGAGATTTTTAAAGTTGTTA
A
Found at i:6851218 original size:148 final size:145
Alignment explanation
Indices: 6850835--6851397 Score: 553
Period size: 148 Copynumber: 3.8 Consensus size: 145
6850825 CAAGGATAAG
* *** *
6850835 GCCTCTGCTGAGATGAGCCATTT-CAAAGATGAGATTTTAAAGTTGTTAAGCCTCTGCTAAGAGG
1 GCCTCTGCTGAGAGGAGTTTTTTCCAAA-ATGAGATTTTAAAGTTGTTGAGCCTCTGCTAAGAGG
** * * *
6850899 AGCCATTTCAAAGATGAGATTTTAAAGTTGTTGAGCTTCTGCTGAGAGGAGCCCTTTTCTAAATG
65 AGCTTTTTC-AAGATGAGATTTTAAAGTTGTTGAGCCTCTACTGAGATGAG-CCTTTTCTAAATG
*
6850964 AGATTTTAAAGTTGTTGA
128 AGATTTTAAAGTTGTTAA
* * * * *
6850982 GCTTCTGCTGAGAGGAGTCTTTTTTCAAAATGAGATTTTAAAGTTGTTGAGCCTCTACTGAGATG
1 GCCTCTGCTGAGAGGAGT-TTTTTCCAAAATGAGATTTTAAAGTTGTTGAGCCTCTGCTAAGAGG
* * ** * * *
6851047 AGCCATTTCCAAGATGAGATTTTAAAGTCATTGAGCCTCTACTAAAATGAG-CTTTTTTCAAATG
65 AG-CTTTTTCAAGATGAGATTTTAAAGTTGTTGAGCCTCTACTGAGATGAGCCTTTTCT-AAATG
*
6851111 AGATTTTTAAAATTGTTAA
128 AGA-TTTTAAAGTTGTTAA
* *
6851130 GCCTCTACTGAGAGGAGTTTTTTCCAAAATGAGATTTTTAAAGTTGTTGAGCCTATGCTAAGAGG
1 GCCTCTGCTGAGAGGAGTTTTTTCCAAAATGAGA-TTTTAAAGTTGTTGAGCCTCTGCTAAGAGG
* * * * *
6851195 AGCTTTTTTC-ATATGAGATTTTTAAAGTTGTTAAGCTTCTGCCTGAGATGAGCCATTTCTAAGA
65 AGC-TTTTTCAAGATGAGA-TTTTAAAGTTGTTGAGCCTCT-ACTGAGATGAGCCTTTTCTAA-A
* *
6851259 TGAAATTTTAAAGTCGTTAA
126 TGAGATTTTAAAGTTGTTAA
* * ** * * * *
6851279 ACCTCTGTTGAGATAAG-CTTTTCC-AAATGAGATTTTTAAAGTTGTTGAGCCTCTGTTGAGATG
1 GCCTCTGCTGAGAGGAGTTTTTTCCAAAATGAGA-TTTTAAAGTTGTTGAGCCTCTGCTAAGAGG
* * * *
6851342 AGCTTTTT-AAAATGAAATTTTTAAAGTTGTTGAGCCTCTATTGAGATGAGTCTTTT
65 AGCTTTTTCAAGATGAGA-TTTTAAAGTTGTTGAGCCTCTACTGAGATGAGCCTTTT
6851398 TCAGATTTTA
Statistics
Matches: 342, Mismatches: 62, Indels: 26
0.80 0.14 0.06
Matches are distributed among these distances:
145 13 0.04
146 37 0.11
147 84 0.25
148 155 0.45
149 43 0.13
150 10 0.03
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.37
Consensus pattern (145 bp):
GCCTCTGCTGAGAGGAGTTTTTTCCAAAATGAGATTTTAAAGTTGTTGAGCCTCTGCTAAGAGGA
GCTTTTTCAAGATGAGATTTTAAAGTTGTTGAGCCTCTACTGAGATGAGCCTTTTCTAAATGAGA
TTTTAAAGTTGTTAA
Found at i:6872047 original size:13 final size:13
Alignment explanation
Indices: 6872029--6872053 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6872019 ATATGTTTTT
6872029 ATTTTTTTAATTA
1 ATTTTTTTAATTA
6872042 ATTTTTTTAATT
1 ATTTTTTTAATT
6872054 TTTAAATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
ATTTTTTTAATTA
Found at i:6872066 original size:21 final size:21
Alignment explanation
Indices: 6872018--6872067 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
6872008 AAAATATTGC
* * *
6872018 TATATGTTTTTATTTTTTTAA
1 TATATTTTTTTAATTTTTAAA
6872039 T-TAATTTTTTTAATTTTTAAA
1 TAT-ATTTTTTTAATTTTTAAA
6872060 TATATTTT
1 TATATTTT
6872068 AAAAAATATA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
20 1 0.04
21 22 0.92
22 1 0.04
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (21 bp):
TATATTTTTTTAATTTTTAAA
Found at i:6874350 original size:15 final size:15
Alignment explanation
Indices: 6874322--6874355 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
6874312 AGATTATCCA
* *
6874322 TTTCCTTTTGTTTCC
1 TTTCCATTTCTTTCC
6874337 TTTCCATTTCTTTCC
1 TTTCCATTTCTTTCC
6874352 TTTC
1 TTTC
6874356 TCTCCCCTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.03, C:0.29, G:0.03, T:0.65
Consensus pattern (15 bp):
TTTCCATTTCTTTCC
Found at i:6876425 original size:20 final size:20
Alignment explanation
Indices: 6876400--6876437 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
6876390 AAAAATAAAG
6876400 ATTTATAATCAATAAAAAAA
1 ATTTATAATCAATAAAAAAA
*
6876420 ATTTATAATTAATAAAAA
1 ATTTATAATCAATAAAAA
6876438 TTTTTGTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (20 bp):
ATTTATAATCAATAAAAAAA
Found at i:6876438 original size:17 final size:18
Alignment explanation
Indices: 6876393--6876440 Score: 53
Period size: 20 Copynumber: 2.6 Consensus size: 18
6876383 TCAATATAAA
*
6876393 AATAAAGATTTATAATCAAT
1 AATAAAAATTTATAAT--AT
*
6876413 AAAAAAAATTTATAAT-T
1 AATAAAAATTTATAATAT
6876430 AATAAAAATTT
1 AATAAAAATTT
6876441 TTGTACTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
17 11 0.44
20 14 0.56
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (18 bp):
AATAAAAATTTATAATAT
Found at i:6877064 original size:24 final size:23
Alignment explanation
Indices: 6877037--6877091 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 23
6877027 ACTTAGCCAA
6877037 AAATTTTACTTTTAATCAAAAAAT
1 AAATTTTA-TTTTAATCAAAAAAT
* * **
6877061 AAATTGATATTTTTATCAAAATTT
1 AAATT-TTATTTTAATCAAAAAAT
6877085 AAATTTT
1 AAATTTT
6877092 GTAGGATATA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
23 1 0.04
24 22 0.88
25 2 0.08
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.47
Consensus pattern (23 bp):
AAATTTTATTTTAATCAAAAAAT
Found at i:6882566 original size:15 final size:15
Alignment explanation
Indices: 6882546--6882580 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
6882536 AAGTATTTGA
6882546 TAGTGAAAATTTTTT
1 TAGTGAAAATTTTTT
6882561 TAGTGAAAATTTTTT
1 TAGTGAAAATTTTTT
6882576 TAGTG
1 TAGTG
6882581 GTCCATAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.17, T:0.51
Consensus pattern (15 bp):
TAGTGAAAATTTTTT
Found at i:6888590 original size:26 final size:25
Alignment explanation
Indices: 6888535--6888590 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 25
6888525 GGATTTTTAA
*
6888535 AATTT-TTGTTTTTGCTTTTTGTAG
1 AATTTCTTGTTTTTGATTTTTGTAG
* * *
6888559 ATTTTCTTGATTTTTGATTTTTTTGG
1 AATTTCTTG-TTTTTGATTTTTGTAG
6888585 AATTTC
1 AATTTC
6888591 GTTTTCACCA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
24 4 0.16
25 3 0.12
26 18 0.72
ACGTcount: A:0.14, C:0.05, G:0.14, T:0.66
Consensus pattern (25 bp):
AATTTCTTGTTTTTGATTTTTGTAG
Found at i:6888935 original size:41 final size:40
Alignment explanation
Indices: 6888890--6889442 Score: 203
Period size: 41 Copynumber: 13.7 Consensus size: 40
6888880 CTTTCAAAAC
* *
6888890 TTTGCCTAGAGCTCTTGGGAAATCATTTAAAAATTTGAAGT
1 TTTGCCTAGAGGTCTTGGAAAATCATTTAAAAATTT-AAGT
* * * * *
6888931 TTTGCCTGGAGGTCTTGAAAAATCATTCAAAAATCTAAAAT
1 TTTGCCTAGAGGTCTTGGAAAATCATTTAAAAAT-TTAAGT
* *
6888972 TTTGCC-CGAAGGTCTTTGAAAATCATTTAAAAATTTAAGAT
1 TTTGCCTAG-AGGTCTTGGAAAATCATTTAAAAATTTAAG-T
* * ** * *
6889013 TTTGCAT-GAAGATCTTTAAAAATCATTTAAAATTTTGAAAT
1 TTTGCCTAG-AGGTCTTGGAAAATCATTTAAAAATTT-AAGT
* * * * *
6889054 TTT-ACTCGAAGGTCTT--ATAAATCCTTTAAAGATTTAGGAT
1 TTTGCCTAG-AGGTCTTGGA-AAATCATTTAAAAATTTAAG-T
* * * *
6889094 TTTG-CTCGGAGGTATTTGG-AAATCGTTTAAAAATTTGAA-A
1 TTTGCCT-AGAGGT-CTTGGAAAATCATTTAAAAATTT-AAGT
* * * *
6889134 TTT-CACTCGGAGGTCTTTGAAAATC-TTTCAAAATTTTAAAAT
1 TTTGC-CT-AGAGGTCTTGGAAAATCATTT-AAAAATTT-AAGT
* * * * * * *
6889176 TTTGCCTAAAAGTATT-GAAGATCATTCAAAGATTTAATAT
1 TTTGCCTAGAGGTCTTGGAAAATCATTTAAAAATTTAA-GT
* * *
6889216 TTTGCCT-GAGGCCTTTTG-AAATCATTTAAAAATCTAAGGT
1 TTTGCCTAGAGGTC-TTGGAAAATCATTTAAAAATTTAA-GT
* *
6889256 TTTGCCT-GAAAGTCTTTGAAAATCATTTAAAAATTTGATA-T
1 TTTGCCTAG-AGGTCTTGGAAAATCATTTAAAAATTT-A-AGT
* * * * *
6889297 TTTGCCTGGAGGTCTT-GAAAATCCTTTGAAAATCTAAAAT
1 TTTGCCTAGAGGTCTTGGAAAATCATTTAAAAAT-TTAAGT
* * * *
6889337 TTTGCC-CGAAGGTACTTGG-ATATCATTCAAAAATCTAAGAT
1 TTTGCCTAG-AGGT-CTTGGAAAATCATTTAAAAATTTAAG-T
* * * * * *
6889378 TTTGCTTAAAAGTCTTGG-AAATTATTCAAAAATCTAAGAT
1 TTTGCCTAGAGGTCTTGGAAAATCATTTAAAAATTTAAG-T
*
6889418 TTTG-CTCAAAGGTCTT-GAAAATCAT
1 TTTGCCT-AGAGGTCTTGGAAAATCAT
6889443 ATACTAATTC
Statistics
Matches: 395, Mismatches: 79, Indels: 77
0.72 0.14 0.14
Matches are distributed among these distances:
39 10 0.03
40 161 0.41
41 210 0.53
42 12 0.03
43 2 0.01
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.37
Consensus pattern (40 bp):
TTTGCCTAGAGGTCTTGGAAAATCATTTAAAAATTTAAGT
Found at i:6889240 original size:40 final size:40
Alignment explanation
Indices: 6889148--6889422 Score: 137
Period size: 40 Copynumber: 6.8 Consensus size: 40
6889138 ACTCGGAGGT
* * *
6889148 CTTTGAAAATC-TTTCAAAATTTTAAAATTTTGCCTAAAAG-
1 CTTTG-AAATCATTT-AAAAATTTAATATTTTGCCTGAAAGC
* * *
6889188 -TATTGAAGATCATTCAAAGATTTAATATTTTGCCTG-AGGC
1 CT-TTGAA-ATCATTTAAAAATTTAATATTTTGCCTGAAAGC
* ** *
6889228 CTTTTGAAATCATTTAAAAATCTAAGGTTTTGCCTGAAAGT
1 C-TTTGAAATCATTTAAAAATTTAATATTTTGCCTGAAAGC
* * * *
6889269 CTTTGAAAATCATTTAAAAATTTGATATTTTGCCTGGAGGT
1 CTTTG-AAATCATTTAAAAATTTAATATTTTGCCTGAAAGC
* * * * * * *
6889310 C-TTGAAAATCCTTTGAAAATCTAAAATTTTGCCCGAAGGTA
1 CTTTG-AAATCATTTAAAAATTTAATATTTTGCCTGAAAG-C
* * * * * * * *
6889351 CTTGGATATCATTCAAAAATCTAAGATTTTGCTTAAAAGT
1 CTTTGAAATCATTTAAAAATTTAATATTTTGCCTGAAAGC
* * * * *
6889391 CTTGGAAATTATTCAAAAATCTAAGATTTTGC
1 CTTTGAAATCATTTAAAAATTTAATATTTTGC
6889423 TCAAAGGTCT
Statistics
Matches: 185, Mismatches: 40, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
39 5 0.03
40 111 0.60
41 66 0.36
42 3 0.02
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.38
Consensus pattern (40 bp):
CTTTGAAATCATTTAAAAATTTAATATTTTGCCTGAAAGC
Found at i:6889380 original size:81 final size:81
Alignment explanation
Indices: 6888890--6889442 Score: 285
Period size: 81 Copynumber: 6.8 Consensus size: 81
6888880 CTTTCAAAAC
* * * * * * * * *
6888890 TTTGCCTAGAGCTCTTGGGAAATCATTTAAAAATTTGAAGTTTTGCCTGGAGGT-CTTGAAAAAT
1 TTTGCCTGGAGGTCTT-GAAAATCCTTTAAAAATCTAAAATTTTGCCTGAAAGTACTTG-AAAAT
* *
6888954 CATTCAAAAATCTAAAAT
64 CATTCAAAAATTTAATAT
* * * * * * *
6888972 TTTGCCCGAAGGTCTTTGAAAATCATTTAAAAATTTAAGATTTTGCATG-AAG-ATCTTTAAAAA
1 TTTGCCTGGAGGTC-TTGAAAATCCTTTAAAAATCTAAAATTTTGCCTGAAAGTA-C-TTGAAAA
* *
6889035 TCATTTAAAATTTTGAA-AT
63 TCATTCAAAAATTT-AATAT
* * * * ** * * * *
6889054 TTT-ACTCGAAGGTCTT-ATAAATCCTTTAAAGATTTAGGATTTTG-CTCGGAGGTATTTGGAAA
1 TTTGCCT-GGAGGTCTTGA-AAATCCTTTAAAAATCTAAAATTTTGCCT-GAAAGTACTTGAAAA
* *
6889116 TCGTTTAAAAATTTGAA-A-
63 TCATTCAAAAATTT-AATAT
* * * *
6889134 TTT-CACTCGGAGGTCTTTGAAAAT-CTTTCAAAATTTTAAAATTTTGCCTAAAAGTA-TTGAAG
1 TTTGC-CT-GGAGGTC-TTGAAAATCCTTT-AAAAATCTAAAATTTTGCCTGAAAGTACTTGAAA
*
6889196 ATCATTCAAAGATTTAATAT
62 ATCATTCAAAAATTTAATAT
* * **
6889216 TTTGCCT-GAGGCCTTTTG-AAATCATTTAAAAATCTAAGGTTTTGCCTGAAAGT-CTTTGAAAA
1 TTTGCCTGGAGG--TCTTGAAAATCCTTTAAAAATCTAAAATTTTGCCTGAAAGTAC-TTGAAAA
* *
6889278 TCATTTAAAAATTTGATAT
63 TCATTCAAAAATTTAATAT
* * * * *
6889297 TTTGCCTGGAGGTCTTGAAAATCCTTTGAAAATCTAAAATTTTGCCCGAAGGTACTTGGATATCA
1 TTTGCCTGGAGGTCTTGAAAATCCTTTAAAAATCTAAAATTTTGCCTGAAAGTACTTGAAAATCA
* *
6889362 TTCAAAAATCTAAGAT
66 TTCAAAAATTTAATAT
* ** * * ** * * *
6889378 TTTGCTTAAAAGTCTTGGAAATTATTCAAAAATCTAAGATTTTG-CTCAAAGGT-CTTGAAAATC
1 TTTGCCTGGAGGTCTTGAAAATCCTTTAAAAATCTAAAATTTTGCCTGAAA-GTACTTGAAAATC
6889441 AT
65 AT
6889443 ATACTAATTC
Statistics
Matches: 365, Mismatches: 79, Indels: 56
0.73 0.16 0.11
Matches are distributed among these distances:
80 53 0.15
81 200 0.55
82 101 0.28
83 11 0.03
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.37
Consensus pattern (81 bp):
TTTGCCTGGAGGTCTTGAAAATCCTTTAAAAATCTAAAATTTTGCCTGAAAGTACTTGAAAATCA
TTCAAAAATTTAATAT
Found at i:6889390 original size:122 final size:123
Alignment explanation
Indices: 6888909--6889440 Score: 453
Period size: 122 Copynumber: 4.4 Consensus size: 123
6888899 AGCTCTTGGG
* * * * *
6888909 AAATCATTTAAAAATTTGAAGTTTTGCCTGGAGGTCTTGAAAAATCATTCAAAAATCTAAAATTT
1 AAATCATTTAAAAATTTGAAATTTTGCCTGAAGGTCTTG-AAAATCCTTTAAAGATCTAAAATTT
* * * *
6888974 TGCCCGAAGGT-CTTTGAAAATCATTTAAAAATTTAAGATTTTGCATG-AAGATCTTTAA
65 TGCCCGAAGGTACTTTGGAAATCATTTAAAAATCTAAGATTTTGCTTGAAAG-TCTTTGA
* * * **
6889032 AAATCATTTAAAATTTTGAAATTTT-ACTCGAAGGTCTT-ATAAATCCTTTAAAGATTTAGGATT
1 AAATCATTTAAAAATTTGAAATTTTGCCT-GAAGGTCTTGA-AAATCCTTTAAAGATCTAAAATT
* * * * ** * * *
6889095 TTGCTCGGAGGTA-TTTGGAAATCGTTTAAAAATTTGAA-ATTTCACTCGGAGGTCTTTGA
64 TTGCCCGAAGGTACTTTGGAAATCATTTAAAAATCT-AAGATTTTGCTTGAAAGTCTTTGA
* * * * * * * * * *
6889154 AAATC-TTTCAAAATTTTAAAATTTTGCCTAAAAGTATTGAAGATCATTCAAAGATTTAATATTT
1 AAATCATTT-AAAAATTTGAAATTTTGCCTGAAGGTCTTGAAAATCCTTTAAAGATCTAAAATTT
* * * * *
6889218 TGCCTG-AGG-CCTTTTGAAATCATTTAAAAATCTAAGGTTTTGCCTGAAAGTCTTTGA
65 TGCCCGAAGGTACTTTGGAAATCATTTAAAAATCTAAGATTTTGCTTGAAAGTCTTTGA
* *
6889275 AAATCATTTAAAAATTTGATATTTTGCCTGGAGGTCTTGAAAATCCTTTGAAA-ATCTAAAATTT
1 AAATCATTTAAAAATTTGAAATTTTGCCTGAAGGTCTTGAAAATCCTTT-AAAGATCTAAAATTT
* * * *
6889339 TGCCCGAAGGTAC-TTGGATATCATTCAAAAATCTAAGATTTTGCTTAAAAGTC-TTGG
65 TGCCCGAAGGTACTTTGGAAATCATTTAAAAATCTAAGATTTTGCTTGAAAGTCTTTGA
* * * *
6889396 AAATTATTCAAAAATCT-AAGATTTTG-CTCAAAGGTCTTGAAAATC
1 AAATCATTTAAAAATTTGAA-ATTTTGCCT-GAAGGTCTTGAAAATC
6889441 ATATACTAAT
Statistics
Matches: 323, Mismatches: 70, Indels: 34
0.76 0.16 0.08
Matches are distributed among these distances:
120 5 0.02
121 126 0.39
122 153 0.47
123 39 0.12
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (123 bp):
AAATCATTTAAAAATTTGAAATTTTGCCTGAAGGTCTTGAAAATCCTTTAAAGATCTAAAATTTT
GCCCGAAGGTACTTTGGAAATCATTTAAAAATCTAAGATTTTGCTTGAAAGTCTTTGA
Found at i:6889423 original size:40 final size:40
Alignment explanation
Indices: 6889233--6889442 Score: 154
Period size: 40 Copynumber: 5.2 Consensus size: 40
6889223 GAGGCCTTTT
* * *
6889233 GAAATCATTTAAAAATCTAAGGTTTTGC-CTGAAAGTCTTTG
1 GAAATCATTCAAAAATCTAAGATTTTGCTC-AAAAGTC-TTG
* * * * * ** *
6889274 AAAATCATTTAAAAATTTGATATTTTGC-CTGGAGGTCTTG
1 GAAATCATTCAAAAATCTAAGATTTTGCTC-AAAAGTCTTG
* * ** * * * *
6889314 AAAATCCTTTGAAAATCTAAAATTTTGCCCGAAGGTACTTG
1 GAAATCATTCAAAAATCTAAGATTTTGCTCAAAAGT-CTTG
* *
6889355 GATATCATTCAAAAATCTAAGATTTTGCTTAAAAGTCTTG
1 GAAATCATTCAAAAATCTAAGATTTTGCTCAAAAGTCTTG
* *
6889395 GAAATTATTCAAAAATCTAAGATTTTGCTCAAAGGTCTTG
1 GAAATCATTCAAAAATCTAAGATTTTGCTCAAAAGTCTTG
*
6889435 AAAATCAT
1 GAAATCAT
6889443 ATACTAATTC
Statistics
Matches: 138, Mismatches: 29, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
40 77 0.56
41 61 0.44
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.36
Consensus pattern (40 bp):
GAAATCATTCAAAAATCTAAGATTTTGCTCAAAAGTCTTG
Found at i:6889426 original size:20 final size:20
Alignment explanation
Indices: 6889363--6889427 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
6889353 TGGATATCAT
6889363 TCAAAAATCTAAGATTTTGC
1 TCAAAAATCTAAGATTTTGC
* * ** ** **
6889383 TTAAAAGTCTTGGAAATTAT
1 TCAAAAATCTAAGATTTTGC
6889403 TCAAAAATCTAAGATTTTGC
1 TCAAAAATCTAAGATTTTGC
6889423 TCAAA
1 TCAAA
6889428 GGTCTTGAAA
Statistics
Matches: 29, Mismatches: 16, Indels: 0
0.64 0.36 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.42, C:0.12, G:0.11, T:0.35
Consensus pattern (20 bp):
TCAAAAATCTAAGATTTTGC
Found at i:6889531 original size:22 final size:22
Alignment explanation
Indices: 6889493--6889544 Score: 70
Period size: 23 Copynumber: 2.4 Consensus size: 22
6889483 ATATTTTTAC
*
6889493 TTCAAAATTTTTAC-TTTTTGT
1 TTCAAAATTTATACTTTTTTGT
*
6889514 TTCAAAAGTTTATCCTTTTTTGT
1 TTCAAAA-TTTATACTTTTTTGT
6889537 TTCAAAAT
1 TTCAAAAT
6889545 ATCTTATCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 7 0.26
22 6 0.22
23 14 0.52
ACGTcount: A:0.27, C:0.12, G:0.06, T:0.56
Consensus pattern (22 bp):
TTCAAAATTTATACTTTTTTGT
Found at i:6889556 original size:23 final size:21
Alignment explanation
Indices: 6889493--6889556 Score: 67
Period size: 23 Copynumber: 2.9 Consensus size: 21
6889483 ATATTTTTAC
6889493 TTCAAAATTTT-TACTTTTTGT
1 TTCAAAATTTTAT-CTTTTTGT
*
6889514 TTCAAAAGTTTATCCTTTTTTGT
1 TTCAAAATTTTAT-C-TTTTTGT
6889537 TTCAAAATATCTTATCTTTT
1 TTCAAAAT-T-TTATCTTTT
6889557 AGATTTGAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
21 10 0.28
22 2 0.06
23 18 0.50
24 2 0.06
25 4 0.11
ACGTcount: A:0.25, C:0.12, G:0.05, T:0.58
Consensus pattern (21 bp):
TTCAAAATTTTATCTTTTTGT
Found at i:6890869 original size:14 final size:14
Alignment explanation
Indices: 6890852--6890878 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
6890842 TTTTTTCATC
6890852 TTTTATTTTTTTTG
1 TTTTATTTTTTTTG
6890866 TTTTATTTTTTTT
1 TTTTATTTTTTTT
6890879 TTTATTATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.00, G:0.04, T:0.89
Consensus pattern (14 bp):
TTTTATTTTTTTTG
Found at i:6891256 original size:36 final size:34
Alignment explanation
Indices: 6891216--6891284 Score: 86
Period size: 35 Copynumber: 1.9 Consensus size: 34
6891206 ACTCAATCAT
6891216 TCATTTCTTTT-TCTTTCCCCTTTTCCTTTTTCTTCC
1 TCATTT-TTTTATCTTTCCCC-TTT-CTTTTTCTTCC
*
6891252 TCATTTTTTTCATTTTTCCCCTTTCTTTTTCTT
1 TCATTTTTTT-ATCTTTCCCCTTTCTTTTTCTT
6891285 TTTTTTCCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
35 13 0.43
36 9 0.30
37 8 0.27
ACGTcount: A:0.04, C:0.29, G:0.00, T:0.67
Consensus pattern (34 bp):
TCATTTTTTTATCTTTCCCCTTTCTTTTTCTTCC
Found at i:6891269 original size:29 final size:28
Alignment explanation
Indices: 6891236--6891357 Score: 76
Period size: 29 Copynumber: 4.4 Consensus size: 28
6891226 TTCTTTCCCC
6891236 TTTTCCTTTTTCTTCCTCATTTTTTTCAT
1 TTTTCCTTTTTCTTCCTC-TTTTTTTCAT
** ** *
6891265 TTTTCCCCTTTCTTTTTCTTTTTTTTCCT
1 TTTTCCTTTTTCTTCCTC-TTTTTTTCAT
*
6891294 TTATTTCTTTATTC-TCCT-TTTTTTTCA-
1 TT-TTCCTTT-TTCTTCCTCTTTTTTTCAT
* *
6891321 TTTTCTCTTTTTATT--TCTTTTTTT-TT
1 TTTTC-CTTTTTCTTCCTCTTTTTTTCAT
*
6891347 TTTTACTTTTT
1 TTTTCCTTTTT
6891358 TTTGTTCTCC
Statistics
Matches: 71, Mismatches: 16, Indels: 16
0.69 0.16 0.16
Matches are distributed among these distances:
25 7 0.10
26 15 0.21
27 7 0.10
28 8 0.11
29 25 0.35
30 6 0.08
31 3 0.04
ACGTcount: A:0.06, C:0.20, G:0.00, T:0.75
Consensus pattern (28 bp):
TTTTCCTTTTTCTTCCTCTTTTTTTCAT
Found at i:6891303 original size:28 final size:26
Alignment explanation
Indices: 6891255--6891431 Score: 88
Period size: 28 Copynumber: 6.2 Consensus size: 26
6891245 TTCTTCCTCA
*
6891255 TTTTTTTCATTTTTCCCCTTTCTTTTTCT
1 TTTTTTTCA-TTTT-CTCTTT-TTTTTCT
* * * *
6891284 TTTTTTTCCTTTATTTCTTTATTCTCCT
1 TTTTTTTCATTT-TCTCTTT-TTTTTCT
6891312 TTTTTTTCATTTTCTCTTTTTATTTCT
1 TTTTTTTCATTTTCTCTTTTT-TTTCT
* *
6891339 TTTTTTT-TTTTTACTTTTTTTTGTTCTCCT
1 TTTTTTTCATTTT-C-TCTTTTT-TT-T-CT
* *
6891369 TATTCTTTTCATTTTTCTCCTTTTATTCT
1 T-TT-TTTTCA-TTTTCTCTTTTTTTTCT
*
6891398 TATGGTTTTCATTTTCT-TTCTTTTTTCT
1 T-T-TTTTTCATTTTCTCTT-TTTTTTCT
*
6891426 TATTTT
1 TTTTTT
6891432 CTCTTTTTTT
Statistics
Matches: 114, Mismatches: 22, Indels: 27
0.70 0.13 0.17
Matches are distributed among these distances:
26 9 0.08
27 18 0.16
28 45 0.39
29 21 0.18
30 4 0.04
31 3 0.03
32 9 0.08
33 1 0.01
34 4 0.04
ACGTcount: A:0.07, C:0.18, G:0.02, T:0.74
Consensus pattern (26 bp):
TTTTTTTCATTTTCTCTTTTTTTTCT
Found at i:6891349 original size:18 final size:18
Alignment explanation
Indices: 6891279--6891365 Score: 63
Period size: 18 Copynumber: 4.7 Consensus size: 18
6891269 CCCCTTTCTT
*
6891279 TTTCTTTTTTT-TCCTTTA
1 TTTCTTTTTTTCT-TTTTA
*
6891297 TTTCTTTATTCTCCTTTTT-
1 TTTCTTT-TT-TTCTTTTTA
* *
6891316 TTTCATTTTCTCTTTTTA
1 TTTCTTTTTTTCTTTTTA
*
6891334 TTTCTTTTTTTTTTTTTA
1 TTTCTTTTTTTCTTTTTA
6891352 CTTT-TTTTTGTTCT
1 -TTTCTTTTT-TTCT
6891366 CCTTATTCTT
Statistics
Matches: 54, Mismatches: 9, Indels: 11
0.73 0.12 0.15
Matches are distributed among these distances:
17 6 0.11
18 29 0.54
19 14 0.26
20 4 0.07
21 1 0.02
ACGTcount: A:0.06, C:0.15, G:0.01, T:0.78
Consensus pattern (18 bp):
TTTCTTTTTTTCTTTTTA
Found at i:6891400 original size:29 final size:28
Alignment explanation
Indices: 6891367--6891429 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 28
6891357 TTTTGTTCTC
6891367 CTTATTCTTTTCATTTT-TCTCCTTTTATT
1 CTTATTCTTTTCATTTTCT-TCCTTTT-TT
** *
6891396 CTTATGGTTTTCATTTTCTTTCTTTTTT
1 CTTATTCTTTTCATTTTCTTCCTTTTTT
6891424 CTTATT
1 CTTATT
6891430 TTCTCTTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
28 7 0.24
29 21 0.72
30 1 0.03
ACGTcount: A:0.10, C:0.17, G:0.03, T:0.70
Consensus pattern (28 bp):
CTTATTCTTTTCATTTTCTTCCTTTTTT
Found at i:6891423 original size:66 final size:60
Alignment explanation
Indices: 6891273--6891444 Score: 158
Period size: 60 Copynumber: 2.8 Consensus size: 60
6891263 ATTTTTCCCC
* *
6891273 TTTCTTTTTCTT-TTTTTTCCTTTATTTCTTTATTCTCCTTTTTTTTCATTTTCTCTTTTTA
1 TTTCTTTTT-TTCTTTTTTTCTTT-TTTCTTTATTCTCCTTTTTTTTCATTTTCTCCTTTTA
* *
6891334 TTTCTTTTTTT-TTTTTTAC-TTTTT-TTTGTTCTCCTTATTCTTTTCATTTTTCTCCTTTTA
1 TTTCTTTTTTTCTTTTTTTCTTTTTTCTTTATTCTCCTT-TT-TTTTCA-TTTTCTCCTTTTA
*
6891394 -TTCTTATGGTTTTCATTTTCTTTCTTTTTTC-TTATTTTCTCTTTTTTTTCA
1 TTTCTT-T--TTTTC-TTTT-TTTCTTTTTTCTTTATTCTC-CTTTTTTTTCA
6891445 CATTTCTTTT
Statistics
Matches: 93, Mismatches: 6, Indels: 20
0.78 0.05 0.17
Matches are distributed among these distances:
57 11 0.12
58 5 0.05
59 13 0.14
60 22 0.24
61 9 0.10
62 4 0.04
64 4 0.04
65 9 0.10
66 13 0.14
67 3 0.03
ACGTcount: A:0.07, C:0.17, G:0.02, T:0.74
Consensus pattern (60 bp):
TTTCTTTTTTTCTTTTTTTCTTTTTTCTTTATTCTCCTTTTTTTTCATTTTCTCCTTTTA
Found at i:6891432 original size:19 final size:18
Alignment explanation
Indices: 6891408--6891459 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 18
6891398 TATGGTTTTC
6891408 ATTTTCTTTCTTTTTTCTT
1 ATTTTCTTT-TTTTTTCTT
**
6891427 ATTTTCTCTTTTTTTTCAC
1 ATTTTCT-TTTTTTTTCTT
6891446 A-TTTCTTTTTTTTT
1 ATTTTCTTTTTTTTT
6891460 TCTTTCGAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 8 0.27
18 5 0.17
19 15 0.50
20 2 0.07
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (18 bp):
ATTTTCTTTTTTTTTCTT
Found at i:6891529 original size:22 final size:23
Alignment explanation
Indices: 6891477--6891523 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
6891467 AGTGGATTCA
*
6891477 AAACTTTGAAAACTTTTTATTGG
1 AAACTTTGAAAACTTTTTATCGG
6891500 AAACTTTGAAAACTTTTTATCGG
1 AAACTTTGAAAACTTTTTATCGG
6891523 A
1 A
6891524 TATTTGCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.40
Consensus pattern (23 bp):
AAACTTTGAAAACTTTTTATCGG
Found at i:6900552 original size:15 final size:15
Alignment explanation
Indices: 6900532--6900570 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
6900522 TAAAATTGGG
6900532 CCTTAAAATGTTAAA
1 CCTTAAAATGTTAAA
6900547 CCTTAAAATGTTAAA
1 CCTTAAAATGTTAAA
*
6900562 CTTTAAAAT
1 CCTTAAAAT
6900571 TCAGGACTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.46, C:0.13, G:0.05, T:0.36
Consensus pattern (15 bp):
CCTTAAAATGTTAAA
Found at i:6900755 original size:24 final size:24
Alignment explanation
Indices: 6900702--6900756 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
6900692 TGACCTATCC
*
6900702 AATT-AAAGTTCTCAAACAAACCCA
1 AATTCAAAGTGCTCAAACAAA-CCA
6900726 AA-TCAAAGTGCTCAAATCAAA-CA
1 AATTCAAAGTGCTCAAA-CAAACCA
6900749 AATTCAAA
1 AATTCAAA
6900757 TCAATTTTCG
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
23 5 0.19
24 18 0.67
25 4 0.15
ACGTcount: A:0.53, C:0.22, G:0.05, T:0.20
Consensus pattern (24 bp):
AATTCAAAGTGCTCAAACAAACCA
Found at i:6902553 original size:3 final size:3
Alignment explanation
Indices: 6902545--6902569 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
6902535 CTCCATACTA
6902545 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
6902570 TTTAATATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:6907316 original size:2 final size:2
Alignment explanation
Indices: 6907311--6907340 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
6907301 TCGGTTTGTG
6907311 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6907341 TGATATAGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6908189 original size:63 final size:63
Alignment explanation
Indices: 6908068--6908189 Score: 147
Period size: 63 Copynumber: 1.9 Consensus size: 63
6908058 GAATTCTTTT
* * * * * *
6908068 TATATATATATATATATATTATATTTTATTTCTTATTTTATCCTTTTATTTTACTTATCTATA
1 TATATATATATATATATATTAAATCTTATTTATTATTTTATCATTTAATTTGACTTATCTATA
* * *
6908131 TATATATATATATATATTTTAAATCTTATTTATTCTTTTATTATTTAATGTTGA-TTATC
1 TATATATATATATATATATTAAATCTTATTTATTATTTTATCATTTAAT-TTGACTTATC
6908190 CTCAATTATC
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
63 46 0.94
64 3 0.06
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.61
Consensus pattern (63 bp):
TATATATATATATATATATTAAATCTTATTTATTATTTTATCATTTAATTTGACTTATCTATA
Found at i:6909277 original size:3 final size:3
Alignment explanation
Indices: 6909269--6909321 Score: 81
Period size: 3 Copynumber: 17.7 Consensus size: 3
6909259 AGATAATCAC
*
6909269 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT- ATA ATC ATAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A
6909317 ATA AT
1 ATA AT
6909322 TTATATTACT
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
2 2 0.04
3 42 0.91
4 2 0.04
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:6918220 original size:3 final size:3
Alignment explanation
Indices: 6918212--6918247 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
6918202 TATCTTTGCA
6918212 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
6918248 GGCTAGTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:6918724 original size:14 final size:15
Alignment explanation
Indices: 6918695--6918728 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
6918685 ATGGTAGCTG
*
6918695 ATCATTCGCATTTGC
1 ATCATTCGCATCTGC
6918710 ATCATT-GCATCTGC
1 ATCATTCGCATCTGC
6918724 ATCAT
1 ATCAT
6918729 AATAAAGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.24, C:0.26, G:0.12, T:0.38
Consensus pattern (15 bp):
ATCATTCGCATCTGC
Found at i:6919878 original size:77 final size:76
Alignment explanation
Indices: 6919690--6919883 Score: 190
Period size: 77 Copynumber: 2.5 Consensus size: 76
6919680 CTAGAGAATC
* * * * * * *
6919690 TTTCAATGGAAATTTCAAACCTTCGATGGGAATTTTGAATACTTTTGATGCAACTCTCGATGCAA
1 TTTCAGTGTAAATTTCAAACCTTCGATGCGAATCTTGAA-ACTTTTCATGCAACCCTCAATGCAA
* ** *
6919755 ATCTTTAGAACT
65 ATATCGAAAACT
* * * * **
6919767 TTTCAGTGTGAATCTCAAATCTTCGATGTGAATCTTGAAAGCTTTTCATGCAACCCTCAATGTGA
1 TTTCAGTGTAAATTTCAAACCTTCGATGCGAATCTTGAAA-CTTTTCATGCAACCCTCAATGCAA
6919832 ATATCGAAAACT
65 ATATCGAAAACT
* * *
6919844 TTTTAGTGTAAATTTCAAACCTTCGATGCAAATCTCGAAA
1 TTTCAGTGTAAATTTCAAACCTTCGATGCGAATCTTGAAA
6919884 ACCTATAGTG
Statistics
Matches: 93, Mismatches: 23, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
76 1 0.01
77 92 0.99
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (76 bp):
TTTCAGTGTAAATTTCAAACCTTCGATGCGAATCTTGAAACTTTTCATGCAACCCTCAATGCAAA
TATCGAAAACT
Found at i:6920239 original size:241 final size:244
Alignment explanation
Indices: 6919793--6920277 Score: 636
Period size: 241 Copynumber: 2.0 Consensus size: 244
6919783 AAATCTTCGA
** * * * *
6919793 TGTGAATCTTGAAAGCTTTTCATGCAACCCTCAATGTGAATATCGAAAACTTTTTAGTGTAAATT
1 TGTGAATCTTGAAAGCTTTTCATGCAACCCTCAATGTGAATATAAAAAAATTTTCAATGTAAATC
** *
6919858 TCAAACCTTCGATGCAAATCTCGAAAACCTATAGTGTGAATGTGTGAATTTGAACCTTCAATGCA
66 TCAAACCTTCGATGCAAATCTAAAAAACCTATAGAGTGAATGTGTGAA--TG-ACCTTCAATGCA
* * * * * **
6919923 TATCTCGAAAGATTTTTGAAACAACCTTTAATGGGATTTCAAGGACTTTTCGATGTGAATACTGA
128 TATCTCAAAAGACTTTTGAAACAACCCTTAATGGGATCTCAAGGACTTTTCAATGTGAATACCAA
* * *
6919988 ACCTTCAATGCAAATCTCTAAGACTTTCGATGCAAATCTCAAGAATCTTTCAG
193 ACCCTCAATGCAAATCTCAAAGACTTTCGATACAAATCTCAAGAA-CTTTCAG
*
6920041 TGTGAATCTTGAAAGCTTTTGATGCAACCCTCAATGTGAATATAAAAAAATTTTCAATGTAAATC
1 TGTGAATCTTGAAAGCTTTTCATGCAACCCTCAATGTGAATATAAAAAAATTTTCAATGTAAATC
* * * * * *
6920106 TCAAACTTTTGATGCAAATCTAAAAAACGTTTAGAGTGAAT-T-TTAA-G-CCTTTAATGCATAT
66 TCAAACCTTCGATGCAAATCTAAAAAACCTATAGAGTGAATGTGTGAATGACCTTCAATGCATAT
6920167 CTCAAAAGACTTTTGAAACAACCCTTAATGGGATCTCAAGGACTTTTCAATGTGAATACCAAACC
131 CTCAAAAGACTTTTGAAACAACCCTTAATGGGATCTCAAGGACTTTTCAATGTGAATACCAAACC
** **
6920232 CTCAATGCAAATCTCAAAGTTTTTTTATACAAATCTCAAGAACTTT
196 CTCAATGCAAATCTCAAAGACTTTCGATACAAATCTCAAGAACTTT
6920278 TTAATGTGAA
Statistics
Matches: 207, Mismatches: 30, Indels: 8
0.84 0.12 0.03
Matches are distributed among these distances:
240 4 0.02
241 106 0.51
243 1 0.00
246 3 0.01
247 1 0.00
248 92 0.44
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (244 bp):
TGTGAATCTTGAAAGCTTTTCATGCAACCCTCAATGTGAATATAAAAAAATTTTCAATGTAAATC
TCAAACCTTCGATGCAAATCTAAAAAACCTATAGAGTGAATGTGTGAATGACCTTCAATGCATAT
CTCAAAAGACTTTTGAAACAACCCTTAATGGGATCTCAAGGACTTTTCAATGTGAATACCAAACC
CTCAATGCAAATCTCAAAGACTTTCGATACAAATCTCAAGAACTTTCAG
Found at i:6920814 original size:33 final size:32
Alignment explanation
Indices: 6920777--6920880 Score: 100
Period size: 33 Copynumber: 3.2 Consensus size: 32
6920767 TAGAGCAATT
**
6920777 TTCAAATTCCATTACCTTTAGTTAGGGGAATCC
1 TTCAAATT-CATTACCTTTAGTTAAAGGAATCC
* * * *
6920810 TTCAAATTTCATTGCCTCTGGTTAAAGGAATCT
1 TTCAAA-TTCATTACCTTTAGTTAAAGGAATCC
* * *
6920843 TTCAAATATCATTACCTTTGGATAAAAGAATCC
1 TTCAAAT-TCATTACCTTTAGTTAAAGGAATCC
6920876 TTCAA
1 TTCAA
6920881 GTATCATAGC
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
32 1 0.02
33 55 0.95
34 2 0.03
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (32 bp):
TTCAAATTCATTACCTTTAGTTAAAGGAATCC
Found at i:6920886 original size:33 final size:33
Alignment explanation
Indices: 6920804--6920896 Score: 107
Period size: 33 Copynumber: 2.8 Consensus size: 33
6920794 TTAGTTAGGG
* * * *
6920804 GAATCCTTCAAATTTCATTGCCTCTGGTTAAAG
1 GAATCCTTCAAATATCATTACCTCTGGATAAAA
* *
6920837 GAATCTTTCAAATATCATTACCTTTGGATAAAA
1 GAATCCTTCAAATATCATTACCTCTGGATAAAA
*
6920870 GAATCCTTCAAGTATCA-TAGCCTCTGG
1 GAATCCTTCAAATATCATTA-CCTCTGG
6920897 TTAGATGAGT
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
32 2 0.04
33 48 0.96
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.34
Consensus pattern (33 bp):
GAATCCTTCAAATATCATTACCTCTGGATAAAA
Found at i:6922573 original size:5 final size:5
Alignment explanation
Indices: 6922565--6922592 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
6922555 CTTTTTCTTT
6922565 TTTGA TTTGA TTTGA TTTGA TTTGA TTT
1 TTTGA TTTGA TTTGA TTTGA TTTGA TTT
6922593 TTTAAGGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.18, T:0.64
Consensus pattern (5 bp):
TTTGA
Found at i:6926389 original size:22 final size:22
Alignment explanation
Indices: 6926364--6926408 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
6926354 TCAAGAAAAC
*
6926364 AAAAAAGAAAGGAAAAATTTTG
1 AAAAAAAAAAGGAAAAATTTTG
*
6926386 AAAAAAAAAAGGATAAATTTTG
1 AAAAAAAAAAGGAAAAATTTTG
6926408 A
1 A
6926409 GAAGCTTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.64, C:0.00, G:0.16, T:0.20
Consensus pattern (22 bp):
AAAAAAAAAAGGAAAAATTTTG
Found at i:6929085 original size:83 final size:83
Alignment explanation
Indices: 6928998--6929221 Score: 236
Period size: 83 Copynumber: 2.7 Consensus size: 83
6928988 TTCTTTAAGC
** * * *
6928998 AAGATTTGTAAGACTTCTAACCTGAATCTGTTTTAGTGTCGAGATTTGTAAGACCTTC-GATGTA
1 AAGATTTGTAAG-CTTCTAAGTTGAATCTGTTTTAGTGTTGAGATTTATAAGATCTTCGGATGTA
* *
6929062 ATCTCTAGGTCATTC-AGGT
65 ACCTCTAAGT-ATTCTAGGT
* * * * * ** * *
6929081 AAGATTCGTAAGTTTTTAAGTTAAATCTATTTTAGCATTGAGATTTATAAGATCTCCGGATGTAG
1 AAGATTTGTAAGCTTCTAAGTTGAATCTGTTTTAGTGTTGAGATTTATAAGATCTTCGGATGTAA
*
6929146 CCTCTAAGTTTTCTAGGT
66 CCTCTAAGTATTCTAGGT
* *
6929164 AAAATTTGTAAGTCTTCTGAGTTGAATCTGTTTTAGTGTTGAGATTTATAAGATCTTC
1 AAGATTTGTAAG-CTTCTAAGTTGAATCTGTTTTAGTGTTGAGATTTATAAGATCTTC
6929222 AAGCTTAATC
Statistics
Matches: 111, Mismatches: 27, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
82 36 0.32
83 38 0.34
84 37 0.33
ACGTcount: A:0.28, C:0.12, G:0.19, T:0.41
Consensus pattern (83 bp):
AAGATTTGTAAGCTTCTAAGTTGAATCTGTTTTAGTGTTGAGATTTATAAGATCTTCGGATGTAA
CCTCTAAGTATTCTAGGT
Found at i:6929213 original size:84 final size:83
Alignment explanation
Indices: 6929001--6929219 Score: 235
Period size: 82 Copynumber: 2.6 Consensus size: 83
6928991 TTTAAGCAAG
* ** * * * * *
6929001 ATTTGTAAGACTTCTAACCTGAATCTGTTTTAGTGTCGAGATTTGTAAGACCTTCGATGTAATCT
1 ATTTGTAAGTCTTCTAAGTTGAATCTGTTTTAGTGTTGAGATTTATAAGATCTCCGATGTAACCT
* *
6929066 CTAGGTCATTCAGGTAAG
66 CTAAGTCATTCAGGTAAA
* * * * ** *
6929084 ATTCGTAAGT-TTTTAAGTTAAATCTATTTTAGCATTGAGATTTATAAGATCTCCGGATGTAGCC
1 ATTTGTAAGTCTTCTAAGTTGAATCTGTTTTAGTGTTGAGATTTATAAGATCTCC-GATGTAACC
*
6929148 TCTAAGT-TTTCTAGGTAAA
65 TCTAAGTCATTC-AGGTAAA
*
6929167 ATTTGTAAGTCTTCTGAGTTGAATCTGTTTTAGTGTTGAGATTTATAAGATCT
1 ATTTGTAAGTCTTCTAAGTTGAATCTGTTTTAGTGTTGAGATTTATAAGATCT
6929220 TCAAGCTTAA
Statistics
Matches: 108, Mismatches: 25, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
82 36 0.33
83 36 0.33
84 36 0.33
ACGTcount: A:0.27, C:0.12, G:0.19, T:0.41
Consensus pattern (83 bp):
ATTTGTAAGTCTTCTAAGTTGAATCTGTTTTAGTGTTGAGATTTATAAGATCTCCGATGTAACCT
CTAAGTCATTCAGGTAAA
Found at i:6929255 original size:84 final size:84
Alignment explanation
Indices: 6928949--6929263 Score: 273
Period size: 84 Copynumber: 3.8 Consensus size: 84
6928939 GCATTCATAG
* * * * *
6928949 GTGTTGAGATTTATAAAACCTTTAGG-CGTAATCTCTAAGTTCTTTAAGCAAGATTTGTAAGACT
1 GTGTTGAGATTTATAAGACCTTCAGGATGTAATCTCTAAG-TCTTCAAGCAAGATTTGTAAGTCT
**
6929013 TCTAACCTGAATCTGTTTTA
65 TCTAAGTTGAATCTGTTTTA
* * * * * *
6929033 GTGTCGAGATTTGTAAGACCTTC--GATGTAATCTCTAGGTCATTCAGGTAAGATTCGTAAGT-T
1 GTGTTGAGATTTATAAGACCTTCAGGATGTAATCTCTAAGTC-TTCAAGCAAGATTTGTAAGTCT
* * *
6929095 TTTAAGTTAAATCTATTTTA
65 TCTAAGTTGAATCTGTTTTA
** * * ** * * * *
6929115 GCATTGAGATTTATAAGATC-TCCGGATGTAGCCTCTAAGTTTTCTAGGTAAAATTTGTAAGTCT
1 GTGTTGAGATTTATAAGACCTTCAGGATGTAATCTCTAAGTCTTC-AAGCAAGATTTGTAAGTCT
*
6929179 TCTGAGTTGAATCTGTTTTA
65 TCTAAGTTGAATCTGTTTTA
* * * *
6929199 GTGTTGAGATTTATAAGATCTTCAAGCT-TAATCTCTCAGTCTTCCAAGCAAGATTTGTAAGTCT
1 GTGTTGAGATTTATAAGACCTTCAGGATGTAATCTCTAAGTCTT-CAAGCAAGATTTGTAAGTCT
6929263 T
65 T
6929264 TCGAGCATAA
Statistics
Matches: 180, Mismatches: 43, Indels: 16
0.75 0.18 0.07
Matches are distributed among these distances:
81 2 0.01
82 37 0.21
83 54 0.30
84 82 0.46
85 5 0.03
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (84 bp):
GTGTTGAGATTTATAAGACCTTCAGGATGTAATCTCTAAGTCTTCAAGCAAGATTTGTAAGTCTT
CTAAGTTGAATCTGTTTTA
Found at i:6929928 original size:91 final size:92
Alignment explanation
Indices: 6929772--6929938 Score: 223
Period size: 91 Copynumber: 1.8 Consensus size: 92
6929762 GTAAGGCCCT
* ** * * *
6929772 GAGCATTTAAATTTATTTTGAAAAGTTGTGAAATTTTTAATGAAATTAATTTTTAAATTTATTTT
1 GAGCATTTAAATTTATTTTGAAAAATTGTGAAACCTCTAATGAAATTAACTTCTAAATTTATTTT
6929837 CAAAAGTTATGGTGCCTTTAATGATAG
66 CAAAAGTTATGGTGCCTTTAATGATAG
*
6929864 GAGCATTTAGATTTATTTT-AAAAATTGTGAAACCTCTAAT-AAGA-TAAGCTTCTAAATTTATT
1 GAGCATTTAAATTTATTTTGAAAAATTGTGAAACCTCTAATGAA-ATTAA-CTTCTAAATTTATT
*
6929926 TTCAAAATTTATG
64 TTCAAAAGTTATG
6929939 AATCTTTAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
90 5 0.08
91 42 0.65
92 18 0.28
ACGTcount: A:0.37, C:0.07, G:0.13, T:0.44
Consensus pattern (92 bp):
GAGCATTTAAATTTATTTTGAAAAATTGTGAAACCTCTAATGAAATTAACTTCTAAATTTATTTT
CAAAAGTTATGGTGCCTTTAATGATAG
Found at i:6930003 original size:18 final size:18
Alignment explanation
Indices: 6929980--6930022 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
6929970 AAACAAAAAA
*
6929980 CAAAAAAC-AAAACAATTC
1 CAAAAAACTAAAA-AAATC
*
6929998 CAAAAATCTAAAAAAATC
1 CAAAAAACTAAAAAAATC
6930016 CAAAAAA
1 CAAAAAA
6930023 TTTTAAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.70, C:0.19, G:0.00, T:0.12
Consensus pattern (18 bp):
CAAAAAACTAAAAAAATC
Found at i:6930461 original size:19 final size:19
Alignment explanation
Indices: 6930423--6930480 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 19
6930413 AAAATCAATG
*
6930423 AAACCCAAATTTCAAT-TTT
1 AAACCCAAATTT-TATGTTT
*
6930442 AGACCCAAATTTTATGTTT
1 AAACCCAAATTTTATGTTT
*
6930461 AAATCCC-AATTTTACGTTT
1 AAA-CCCAAATTTTATGTTT
6930480 A
1 A
6930481 TTTTTTATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
18 2 0.06
19 28 0.85
20 3 0.09
ACGTcount: A:0.36, C:0.19, G:0.05, T:0.40
Consensus pattern (19 bp):
AAACCCAAATTTTATGTTT
Found at i:6932133 original size:3 final size:3
Alignment explanation
Indices: 6932125--6932153 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
6932115 AATGGAATAG
6932125 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
6932154 GTTTGAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:6932871 original size:18 final size:18
Alignment explanation
Indices: 6932836--6932869 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
6932826 TTTTAGTACT
*
6932836 AAATAAATAATATGTTTG
1 AAATAAATAAAATGTTTG
6932854 AAATAAA-AAAATGTTT
1 AAATAAATAAAATGTTT
6932870 TGGAAAATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (18 bp):
AAATAAATAAAATGTTTG
Found at i:6933175 original size:20 final size:21
Alignment explanation
Indices: 6933139--6933184 Score: 76
Period size: 20 Copynumber: 2.2 Consensus size: 21
6933129 AAAGGATAAG
*
6933139 TTGATCCCTTAGAAAAATTGA
1 TTGATCCCCTAGAAAAATTGA
6933160 TTGATCCCCT-GAAAAATTGA
1 TTGATCCCCTAGAAAAATTGA
6933180 TTGAT
1 TTGAT
6933185 TGATTTTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 15 0.62
21 9 0.38
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (21 bp):
TTGATCCCCTAGAAAAATTGA
Found at i:6934731 original size:21 final size:21
Alignment explanation
Indices: 6934690--6934742 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
6934680 TGCAAAATTG
* * *
6934690 GGAAAAAAGGATCGATCCCTT
1 GGAAAAATGGATCAATACCTT
6934711 GGAAAAATGGATCAATACCTT
1 GGAAAAATGGATCAATACCTT
*
6934732 -AAAAAATGGAT
1 GGAAAAATGGAT
6934743 TAATTGATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 10 0.36
21 18 0.64
ACGTcount: A:0.45, C:0.13, G:0.21, T:0.21
Consensus pattern (21 bp):
GGAAAAATGGATCAATACCTT
Found at i:6934978 original size:21 final size:21
Alignment explanation
Indices: 6934910--6934978 Score: 63
Period size: 21 Copynumber: 3.3 Consensus size: 21
6934900 TTCAAGACAA
* *
6934910 CCAAAATGGATTGATC-CCTTG
1 CCAAAATGGATCGATCACC-AG
*
6934931 CCAAAATGGATCGATCA--GG
1 CCAAAATGGATCGATCACCAG
6934950 TCCAAAAATGGATCGATCACCAG
1 -CC-AAAATGGATCGATCACCAG
6934973 CCAAAA
1 CCAAAA
6934979 CAGATCAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
19 1 0.03
20 2 0.05
21 34 0.85
22 2 0.05
23 1 0.03
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.19
Consensus pattern (21 bp):
CCAAAATGGATCGATCACCAG
Found at i:6938461 original size:18 final size:19
Alignment explanation
Indices: 6938437--6938489 Score: 74
Period size: 17 Copynumber: 2.9 Consensus size: 19
6938427 GTTGAATTTA
6938437 AAAAGAAATAAAAAAAATT
1 AAAAGAAATAAAAAAAATT
**
6938456 -AAAG-AATAAAAAAGGTT
1 AAAAGAAATAAAAAAAATT
6938473 AAAAGAAATAAAAAAAA
1 AAAAGAAATAAAAAAAA
6938490 AAAGAAAACT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 11 0.39
18 8 0.29
19 9 0.32
ACGTcount: A:0.77, C:0.00, G:0.09, T:0.13
Consensus pattern (19 bp):
AAAAGAAATAAAAAAAATT
Found at i:6938475 original size:27 final size:24
Alignment explanation
Indices: 6938445--6938493 Score: 62
Period size: 27 Copynumber: 1.9 Consensus size: 24
6938435 TAAAAAGAAA
6938445 TAAAAAAAATTAAAGAATAAAAAAGGT
1 TAAAAAAAA-TAAA-AA-AAAAAAGGT
*
6938472 TAAAAGAAATAAAAAAAAAAAG
1 TAAAAAAAATAAAAAAAAAAAG
6938494 AAAACTAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 7 0.33
25 2 0.10
26 4 0.19
27 8 0.38
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.14
Consensus pattern (24 bp):
TAAAAAAAATAAAAAAAAAAAGGT
Found at i:6941285 original size:23 final size:23
Alignment explanation
Indices: 6941253--6941301 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
6941243 TTTGGTTGCA
*
6941253 TTATAATTATCTAGGTTTACAAG
1 TTATAATTATATAGGTTTACAAG
* *
6941276 TTATACTTATATGGGTTTACAAG
1 TTATAATTATATAGGTTTACAAG
6941299 TTA
1 TTA
6941302 CATTGTAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.33, C:0.08, G:0.14, T:0.45
Consensus pattern (23 bp):
TTATAATTATATAGGTTTACAAG
Found at i:6943500 original size:17 final size:17
Alignment explanation
Indices: 6943478--6943510 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
6943468 CTTACTCCAA
6943478 AAAAAAAAAAAGGAAAG
1 AAAAAAAAAAAGGAAAG
*
6943495 AAAAAAAAAAGGGAAA
1 AAAAAAAAAAAGGAAA
6943511 ATAGCCCATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAAGGAAAG
Found at i:6943893 original size:2 final size:2
Alignment explanation
Indices: 6943886--6943911 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6943876 AATGGTGTGA
6943886 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
6943912 TTCTAGCTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6947572 original size:21 final size:20
Alignment explanation
Indices: 6947547--6947589 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
6947537 TAAATTTTTA
6947547 GAAAAAGAAAATTT-TGATTT
1 GAAAAAG-AAATTTATGATTT
6947567 GAAAAAGAAATTTGATGATTT
1 GAAAAAGAAATTT-ATGATTT
6947588 GA
1 GA
6947590 TGAATGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.29
20 7 0.33
21 8 0.38
ACGTcount: A:0.49, C:0.00, G:0.19, T:0.33
Consensus pattern (20 bp):
GAAAAAGAAATTTATGATTT
Found at i:6951122 original size:38 final size:37
Alignment explanation
Indices: 6951076--6951153 Score: 120
Period size: 38 Copynumber: 2.1 Consensus size: 37
6951066 GTTTGTTGAG
*
6951076 TTGTATTGGATTAGGATGCATAAATTGAGGGGGAGTT
1 TTGTATTGGATTAGGATGCACAAATTGAGGGGGAGTT
* *
6951113 TTGTCATTGGATTATGATGCACAAATTGATGGGGAGTT
1 TTGT-ATTGGATTAGGATGCACAAATTGAGGGGGAGTT
6951151 TTG
1 TTG
6951154 CCATGCATTG
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
37 4 0.11
38 33 0.89
ACGTcount: A:0.26, C:0.05, G:0.32, T:0.37
Consensus pattern (37 bp):
TTGTATTGGATTAGGATGCACAAATTGAGGGGGAGTT
Found at i:6952007 original size:20 final size:20
Alignment explanation
Indices: 6951984--6952030 Score: 87
Period size: 19 Copynumber: 2.4 Consensus size: 20
6951974 GCATAGACAA
6951984 GATCGATCCCCTCTAGAAGG
1 GATCGATCCCCTCTAGAAGG
6952004 GATCGAT-CCCTCTAGAAGG
1 GATCGATCCCCTCTAGAAGG
6952023 GATCGATC
1 GATCGATC
6952031 ACCTTTTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 19 0.73
20 7 0.27
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.21
Consensus pattern (20 bp):
GATCGATCCCCTCTAGAAGG
Found at i:6957785 original size:2 final size:2
Alignment explanation
Indices: 6957778--6957810 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
6957768 TGAATTTAAA
*
6957778 AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6957811 ATGAATGATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6960381 original size:29 final size:27
Alignment explanation
Indices: 6960327--6960381 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
6960317 TAATTGATTA
* * *
6960327 TATGTTAAAAAGAGTTAATATTTACTT
1 TATGTTAAAAAGAGATAAAAATTACTT
6960354 TATGTTAAAATAGATGATAAAAATTACT
1 TATGTTAAAA-AGA-GATAAAAATTACT
6960382 ACAATTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 10 0.43
28 3 0.13
29 10 0.43
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.40
Consensus pattern (27 bp):
TATGTTAAAAAGAGATAAAAATTACTT
Found at i:6967446 original size:356 final size:352
Alignment explanation
Indices: 6966788--6967685 Score: 1093
Period size: 356 Copynumber: 2.5 Consensus size: 352
6966778 CCCCTTAAAC
* * * * * *
6966788 ATATCGCCACACAAATTCTAACACTGTTATTAAAGGCGTATATCTAAAAAAGATGCCTTTAATAA
1 ATAT-GCCACACAAATTGTAACACTATTATTGAAGGCGTATATTTAAGATAGATGCCTTTAATAA
* * * *
6966853 TTCTTATTACAGTTTATAGT-TAATTACTGAAGGCGGTTGCAGAAAACAACGCCTTTAATAATTT
65 TTTTTATCACAGTTTGTA-TATAATTACTGAAGGCGGTTACAGAAAACAACGCCTTTAATAA-TT
* * * * ** *
6966917 TTCAAAAAAAAAATTTTAGATTATTAAAGGCA-TCTTTTATTATGACACACTTTCAATATACCAC
128 TTC--CAAAAAATTTTTAGATTATTAAAGG-AGTCTTTTATTATAAAATGCCTTCAATATACCAC
* *
6966981 GATGGTAATGGAAGGCATTTATTAGTAAAGGCACATTCAATATACTTTTAAACTTATAAATCCAT
190 GATGGTAATGGAAGGCATTTATTAGAAAAGGCACATTCAATATACCTTTAAACTTATAAATCCAT
* * * *
6967046 TACTGAAGCCGTTTGTTAATAACATACGCTTTCAAAATTTTTTCACTTAATATTTTGAAAATTAT
255 TACTGAAGCCGTTTATTAATAACAGACGCCTTCAAAATTTTTTCACTAAATATTTTGAAAATTAT
*
6967111 TAAAGGCATCTTTTACTATAAAATACC-TCATAT
320 TAAAGGCATCTTCTACTATAAAATACCTTC-TAT
*
6967144 ATATAGCCACACAAATTGTAACACTATTATTGAAGGCGTATATTTAAGATAGATGACTTTAATAA
1 ATAT-GCCACACAAATTGTAACACTATTATTGAAGGCGTATATTTAAGATAGATGCCTTTAATAA
* * * * *
6967209 TTTTTATCACAGTTTGTATATAATTACTGAAGGTGATTTCAAAAAACAACGCCTTCAATAATTTT
65 TTTTTATCACAGTTTGTATATAATTACTGAAGGCGGTTACAGAAAACAACGCCTTTAATAATTTT
* * *
6967274 CCTAAAAACTTTTCTCGGATTATTAAAGGAGTCTTTTATTATAAAATGCCTTCAATATACCATGA
130 CC-AAAAAATTTT-T-AGATTATTAAAGGAGTCTTTTATTATAAAATGCCTTCAATATACCACGA
* * * *
6967339 TGGTAATGGAAGGCCTTTATTAGAAAATGCGCCTTCAATATACCTTTAAACTTAGT-AATCCATT
192 TGGTAATGGAAGGCATTTATTAGAAAAGGCACATTCAATATACCTTTAAACTTA-TAAATCCATT
** *
6967403 ACTGAAGGTGTTTATTAATAACAGACGCCTTCAAAATTTTTTCACTAAATATTTTGAGAATTATT
256 ACTGAAGCCGTTTATTAATAACAGACGCCTTCAAAATTTTTTCACTAAATATTTTGAAAATTATT
* *
6967468 AAAGGCATCTTCTACTGTAAAATGCCTTCTAT
321 AAAGGCATCTTCTACTATAAAATACCTTCTAT
* * * * * * *
6967500 ATACTGTCATACAAATTGTAACACTATTATTGAATGTGTGTATTTAAGATAGACGCCTTTAACAA
1 ATA-TGCCACACAAATTGTAACACTATTATTGAAGGCGTATATTTAAGATAGATGCCTTTAATAA
* * * * * *
6967565 TTTCTATCACAATTTGTATATAATTACTGAAGACGGTTACAGATAACAATGCCTTTAATTATTTT
65 TTTTTATCACAGTTTGTATATAATTACTGAAGGCGGTTACAGAAAACAACGCCTTTAATAATTTT
* * * * *
6967630 CCAAAAATTTTTTTTTGATTATTAAAGGTGTCTTTAATTATAAAATGCCTTTAATA
130 CCAAAAA--ATTTTTAGATTATTAAAGGAGTCTTTTATTATAAAATGCCTTCAATA
6967686 ATTTGTTATA
Statistics
Matches: 466, Mismatches: 66, Indels: 21
0.84 0.12 0.04
Matches are distributed among these distances:
354 8 0.02
355 50 0.11
356 400 0.86
357 8 0.02
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.37
Consensus pattern (352 bp):
ATATGCCACACAAATTGTAACACTATTATTGAAGGCGTATATTTAAGATAGATGCCTTTAATAAT
TTTTATCACAGTTTGTATATAATTACTGAAGGCGGTTACAGAAAACAACGCCTTTAATAATTTTC
CAAAAAATTTTTAGATTATTAAAGGAGTCTTTTATTATAAAATGCCTTCAATATACCACGATGGT
AATGGAAGGCATTTATTAGAAAAGGCACATTCAATATACCTTTAAACTTATAAATCCATTACTGA
AGCCGTTTATTAATAACAGACGCCTTCAAAATTTTTTCACTAAATATTTTGAAAATTATTAAAGG
CATCTTCTACTATAAAATACCTTCTAT
Found at i:6974498 original size:2 final size:2
Alignment explanation
Indices: 6974472--6974514 Score: 56
Period size: 2 Copynumber: 22.5 Consensus size: 2
6974462 CTATGTATGT
6974472 TA TA -A TA TA -A TA T- TA TA TA TGA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA
6974512 TA T
1 TA T
6974515 TGATCTTATT
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
1 3 0.08
2 32 0.86
3 2 0.05
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:6999134 original size:2 final size:2
Alignment explanation
Indices: 6999127--6999189 Score: 69
Period size: 2 Copynumber: 33.0 Consensus size: 2
6999117 GGCAGAGGCG
* * * *
6999127 GA GA GA GA GA GA GA GA GA GA G- GA GA -A GG GG GA GC GG GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
6999167 G- GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA
6999190 CAAGAAGAAG
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
1 3 0.06
2 50 0.94
ACGTcount: A:0.43, C:0.02, G:0.56, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7001942 original size:3 final size:3
Alignment explanation
Indices: 7001934--7001970 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
7001924 TCCTTTTAGA
*
7001934 AAT AAT AAT AAT AAT AAC AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
7001971 GTTTCTCACC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:7011084 original size:24 final size:24
Alignment explanation
Indices: 7011057--7011105 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
7011047 TTGAAAAGAT
7011057 AAAATTCAAATGAATGGGAAACTG
1 AAAATTCAAATGAATGGGAAACTG
7011081 AAAATTCAAATGAATGGGAAACTG
1 AAAATTCAAATGAATGGGAAACTG
7011105 A
1 A
7011106 GTAAAGGGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.51, C:0.08, G:0.20, T:0.20
Consensus pattern (24 bp):
AAAATTCAAATGAATGGGAAACTG
Found at i:7011793 original size:2 final size:2
Alignment explanation
Indices: 7011788--7011819 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7011778 GTAATGTAAT
7011788 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
7011820 CCCTTCTCTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Done.