Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14313602
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 50000 characters in sequence are not A, C, G, or T
File 33 of 74
Found at i:7184152 original size:21 final size:19
Alignment explanation
Indices: 7184110--7184152 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 19
7184100 TGAATTTTTA
*
7184110 GAAAAAGAAAATTTTGATTT
1 GAAAAAG-AAATTTTGAATT
7184130 GAAAAAGAAATTTGATGAATT
1 GAAAAAGAAATTT--TGAATT
7184151 GA
1 GA
7184153 TGAAAGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 6 0.30
20 7 0.35
21 7 0.35
ACGTcount: A:0.51, C:0.00, G:0.19, T:0.30
Consensus pattern (19 bp):
GAAAAAGAAATTTTGAATT
Found at i:7186973 original size:26 final size:27
Alignment explanation
Indices: 7186924--7186980 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
7186914 TTGGCATCGC
*
7186924 GGCCCAATTAAGGCCCATTGATGTCCG
1 GGCCCAACTAAGGCCCATTGATGTCCG
* *
7186951 GGCCCAACT-AGGCCCATTTATGTTCG
1 GGCCCAACTAAGGCCCATTGATGTCCG
7186977 GGCC
1 GGCC
7186981 TAATTGGGCG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 19 0.70
27 8 0.30
ACGTcount: A:0.19, C:0.32, G:0.26, T:0.23
Consensus pattern (27 bp):
GGCCCAACTAAGGCCCATTGATGTCCG
Found at i:7187089 original size:3 final size:3
Alignment explanation
Indices: 7187081--7187137 Score: 107
Period size: 3 Copynumber: 19.3 Consensus size: 3
7187071 TATATTCTTA
7187081 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7187129 T-T TAT TAT T
1 TAT TAT TAT T
7187138 TTTTTTCTTT
Statistics
Matches: 53, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 51 0.96
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:7198524 original size:45 final size:46
Alignment explanation
Indices: 7198469--7198574 Score: 126
Period size: 45 Copynumber: 2.3 Consensus size: 46
7198459 AAGGAAAATT
* **
7198469 TTCATGTTGAAAACCCAAAAGGGTGACTTG-ACCCAAAAAAAAAGG-
1 TTCAAGTTGAAAACCCAAAAGGGCAACTTGAACCC-AAAAAAAAGGA
* **
7198514 TTCAAGTTGAAAACCCGAAAGGGCAACTTGAACCCAAAGGAAAGGA
1 TTCAAGTTGAAAACCCAAAAGGGCAACTTGAACCCAAAAAAAAGGA
*
7198560 TTCAAATTGAAAACC
1 TTCAAGTTGAAAACC
7198575 TTAAAAGGTA
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
45 34 0.65
46 18 0.35
ACGTcount: A:0.44, C:0.19, G:0.20, T:0.17
Consensus pattern (46 bp):
TTCAAGTTGAAAACCCAAAAGGGCAACTTGAACCCAAAAAAAAGGA
Found at i:7199589 original size:119 final size:119
Alignment explanation
Indices: 7199226--7199890 Score: 533
Period size: 119 Copynumber: 5.6 Consensus size: 119
7199216 CACTTATCTG
* * * * * * ** * *
7199226 ATCTAGGCTTAGTTCAGATCATTTCTTGTGAATCATAATTTCATCCTGATCATTTATTTTTGACT
1 ATCTTGGCCTAGTCCAGATCATTTCTTATGATTCGTGGTTTCATCCCGATCATTTATTTTTGACC
* * ** * * * * * *
7199291 TCGACTAGGTATTGGTCGCTTTATTTTGACTCGTGGTTTCATCCCGATCACTTA
66 TCGACTCGATCCTGGTAGTTTTATTTTGACTCATGGTTTTATCCTGGTCACTTA
* * * * *
7199345 ATCTTGG-CTCAGTCTAGATCATTTCTTATGATTCATAGTTTTATCCCGATCATTTA-TTTCGAC
1 ATCTTGGCCT-AGTCCAGATCATTTCTTATGATTCGTGGTTTCATCCCGATCATTTATTTTTGAC
** * * * ** ** *
7199408 CTTAACTTGGTCGTAATCA-TTTTATTTTGACTCATGGTTTTATTTTGGTCACTCA
65 CTCGACTCGATCCTGGT-AGTTTTATTTTGACTCATGGTTTTATCCTGGTCACTTA
* * * * *
7199463 ATCTTGGCCTAATCCAAATCATTTTTTATGATTCATGGTTTCATCCCGATCATTTATTTTTTACC
1 ATCTTGGCCTAGTCCAGATCATTTCTTATGATTCGTGGTTTCATCCCGATCATTTATTTTTGACC
* * * *
7199528 TCGACTCGATCCTGGTAGCTTTATTTTGACTCATGGTTTTGTCCTGGTCAATTG
66 TCGACTCGATCCTGGTAGTTTTATTTTGACTCATGGTTTTATCCTGGTCACTTA
* * * * *
7199582 ATCTTGGCCCAGTCCAGATCATTTCTTATGAATCGTGGTTTTATCCTGATCATTTATTTTCGACC
1 ATCTTGGCCTAGTCCAGATCATTTCTTATGATTCGTGGTTTCATCCCGATCATTTATTTTTGACC
* * ** *
7199647 TCGACT-TAGTCCTAGTCA-TTTTATTTTGACTCATGGTTTCGT-CTCGATCACTTA
66 TCGACTCGA-TCCTGGT-AGTTTTATTTTGACTCATGGTTTTATCCT-GGTCACTTA
* * * * * *
7199701 ATCTT-GACTCAATCTAGATCATTTTTTACGATTCGTGGTTTCATCCCGATCATTTATTTTTTAC
1 ATCTTGGCCT-AGTCCAGATCATTTCTTATGATTCGTGGTTTCATCCCGATCATTTATTTTTGAC
* * * *
7199765 CTCGACTC-AGTCCTGGTTGTTTTATTTTGACTCATGGTTTCATTCC-AGTCATTTA
65 CTCGACTCGA-TCCTGGTAGTTTTATTTTGACTCATGGTTTTA-TCCTGGTCACTTA
* ** * * *
7199820 AT-ATGGTTTAGTCCAGATCATTTCTTACGATTTGTGGTTTCATCCC-AGTCATTTATTTTTTAC
1 ATCTTGGCCTAGTCCAGATCATTTCTTATGATTCGTGGTTTCATCCCGA-TCATTTATTTTTGAC
*
7199883 CTCAACTC
65 CTCGACTC
7199891 AGTCCTAGTC
Statistics
Matches: 440, Mismatches: 91, Indels: 31
0.78 0.16 0.06
Matches are distributed among these distances:
117 1 0.00
118 153 0.35
119 283 0.64
120 2 0.00
121 1 0.00
ACGTcount: A:0.20, C:0.21, G:0.14, T:0.45
Consensus pattern (119 bp):
ATCTTGGCCTAGTCCAGATCATTTCTTATGATTCGTGGTTTCATCCCGATCATTTATTTTTGACC
TCGACTCGATCCTGGTAGTTTTATTTTGACTCATGGTTTTATCCTGGTCACTTA
Found at i:7199915 original size:356 final size:355
Alignment explanation
Indices: 7199240--7199915 Score: 795
Period size: 356 Copynumber: 1.9 Consensus size: 355
7199230 AGGCTTAGTT
* * * * *
7199240 CAGATCATTTCTTGTGAATCATAATTTCATCCTGATCATTTATTTTTGACTTCGACTAGGTATTG
1 CAGATCATTTCTTATGAATCATAATTTCATCCTGATCATTTATTTTCGACCTCGACTAGGTACTA
* * * *
7199305 GTCGCTTTATTTTGACTCGTGGTTTCATCCCGATCACTTAATCTTGGCTCAGTCTAGATCATTTC
66 GTCACTTTATTTTGACTCATGGTTTCATCCCGATCACTTAATCTTGACTCAATCTAGATCATTTC
* * * ** *
7199370 TTATGATTCATAGTTTTATCCCGATCATTTATTTCGACCTTAACTTGGTCGTAATCATTTTATTT
131 TTACGATTCATAGTTTCATCCCGATCATTTATTTCGACCTCAACTCAGTCCTAATCATTTTATTT
* *** * * *
7199435 TGACTCATGGTTTTATTTTGGTCACTCAATCTTGGCCTAATCCAAATCATTTTTTATGATTCATG
196 TGACTCATGGTTTCATTCCAGTCACTCAATCATGGCCTAATCCAAATCATTTCTTACGATTCATG
* * *
7199500 GTTTCATCCCGATCATTTATTTTTTACCTCGACTCGATCCTGGTAGCTTTATTTTGACTCATGGT
261 GTTTCATCCCGATCATTTATTTTTTACCTCAACTCGATCCTAGTA-CTTTATCTTGACTCATGGT
7199565 TTTGTCCTGGTCAATTGATCTTGGCCCAGTC
325 TTTGTCCTGGTCAATTGATCTTGGCCCAGTC
* ** * *
7199596 CAGATCATTTCTTATGAATCGTGGTTTTATCCTGATCATTTATTTTCGACCTCGACTTA-GTCCT
1 CAGATCATTTCTTATGAATCATAATTTCATCCTGATCATTTATTTTCGACCTCGAC-TAGGTACT
* * *
7199660 AGTCATTTTATTTTGACTCATGGTTTCGTCTCGATCACTTAATCTTGACTCAATCTAGATCATTT
65 AGTCACTTTATTTTGACTCATGGTTTCATCCCGATCACTTAATCTTGACTCAATCTAGATCATTT
* * * ** * ** **
7199725 TTTACGATTCGTGGTTTCATCCCGATCATTTATTTTTTACCTCGACTCAGTCCTGGTTGTTTTAT
130 CTTACGATTCATAGTTTCATCCCGATCATTTA-TTTCGACCTCAACTCAGTCCTAATCATTTTAT
* * ** * * **
7199790 TTTGACTCATGGTTTCATTCCAGTCATTTAAT-ATGGTTTAGTCCAGATCATTTCTTACGATTTG
194 TTTGACTCATGGTTTCATTCCAGTCACTCAATCATGGCCTAATCCAAATCATTTCTTACGATTCA
7199854 TGGTTTCATCCC-AGTCATTTATTTTTTACCTCAACTC-AGTCCTAGT-CATTTCATCTTGACTC
259 TGGTTTCATCCCGA-TCATTTATTTTTTACCTCAACTCGA-TCCTAGTAC-TTT-ATCTTGACTC
7199916 GTAGTTTAGC
Statistics
Matches: 263, Mismatches: 51, Indels: 12
0.81 0.16 0.04
Matches are distributed among these distances:
354 1 0.00
355 5 0.02
356 208 0.79
357 49 0.19
ACGTcount: A:0.20, C:0.21, G:0.14, T:0.45
Consensus pattern (355 bp):
CAGATCATTTCTTATGAATCATAATTTCATCCTGATCATTTATTTTCGACCTCGACTAGGTACTA
GTCACTTTATTTTGACTCATGGTTTCATCCCGATCACTTAATCTTGACTCAATCTAGATCATTTC
TTACGATTCATAGTTTCATCCCGATCATTTATTTCGACCTCAACTCAGTCCTAATCATTTTATTT
TGACTCATGGTTTCATTCCAGTCACTCAATCATGGCCTAATCCAAATCATTTCTTACGATTCATG
GTTTCATCCCGATCATTTATTTTTTACCTCAACTCGATCCTAGTACTTTATCTTGACTCATGGTT
TTGTCCTGGTCAATTGATCTTGGCCCAGTC
Found at i:7200111 original size:26 final size:26
Alignment explanation
Indices: 7200074--7200172 Score: 94
Period size: 26 Copynumber: 3.8 Consensus size: 26
7200064 ACACCTATTT
*
7200074 ATGTTC-AGGCCTAATTAGGCCCATTG
1 ATGTTCGA-GCCTAATTAGGCCCATTA
* *
7200100 GTGTTCGAGCCTAATTACGCCCATTA
1 ATGTTCGAGCCTAATTAGGCCCATTA
* * *
7200126 ATGTTCGAGCCCAACTAGGCCCATTT
1 ATGTTCGAGCCTAATTAGGCCCATTA
* *
7200152 ATG-TCTGGGCCTAATTGGGCC
1 ATGTTC-GAGCCTAATTAGGCC
7200173 AACTCTTTTT
Statistics
Matches: 59, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
25 2 0.03
26 56 0.95
27 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.23, T:0.29
Consensus pattern (26 bp):
ATGTTCGAGCCTAATTAGGCCCATTA
Found at i:7200211 original size:3 final size:3
Alignment explanation
Indices: 7200205--7200347 Score: 118
Period size: 3 Copynumber: 48.3 Consensus size: 3
7200195 ATTATTTGAC
* * **
7200205 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-T TCT T-T TTT TGG
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
7200251 TAT T-T CTAT GTAT ATACT TA- TAT TCT TAT TAT TAT TA- TAT TAT TAT
1 TAT TAT -TAT -TAT -TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
7200297 TAT TAC TAT TAT TAT TAT TAC TAC TAT TAT TAT CAT TAT T-T TAT TTT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7200344 TAT T
1 TAT T
7200348 TTTTCTTTCC
Statistics
Matches: 116, Mismatches: 16, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
2 11 0.09
3 96 0.83
4 8 0.07
5 1 0.01
ACGTcount: A:0.28, C:0.06, G:0.02, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:7200376 original size:27 final size:27
Alignment explanation
Indices: 7200341--7200395 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
7200331 ATTATTTTAT
*
7200341 TTTTATTTTTTCTTTCCTTTTCTTTTC
1 TTTTATTTTTTCTTTCCTTTTCTGTTC
* * *
7200368 TTTTGTTTTTTTTTTCTTTTTCTGTTC
1 TTTTATTTTTTCTTTCCTTTTCTGTTC
7200395 T
1 T
7200396 AATTTGTACG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.02, C:0.15, G:0.04, T:0.80
Consensus pattern (27 bp):
TTTTATTTTTTCTTTCCTTTTCTGTTC
Found at i:7206968 original size:148 final size:148
Alignment explanation
Indices: 7206675--7206966 Score: 484
Period size: 148 Copynumber: 2.0 Consensus size: 148
7206665 GAAAGAGTCA
*
7206675 AAACTGTGTTAGGTAACTTTTTGAGGAATCATGTCAAAAAATACACCATCTTTTTTAGCTTTTTG
1 AAACTGTGTTAGGTAACTTTTTGAGGAATCATGTCAAAAAATACACCATCTTTGTTAGCTTTTTG
*
7206740 TAAAGTCTGTAAAAATATTGTCTTTTCCCAAGATTGCTACTCTATCTATCCCTTTCAAGTATATT
66 TAAAGTCTGTAAAAACATTGTCTTTTCCCAAGATTGCTACTCTATCTATCCCTTTCAAGTATATT
7206805 TTGTAGGTTTTTATTATC
131 TTGTAGGTTTTTATTATC
* *
7206823 AAACTGTGTTAGGTAACTTTTTGAGGAATCATGTCAAAAACTGCACCATCTTTGTTAGCTTTTTG
1 AAACTGTGTTAGGTAACTTTTTGAGGAATCATGTCAAAAAATACACCATCTTTGTTAGCTTTTTG
* *
7206888 TGAAGT-T-T-GAAACATTGTCTATTT-CCAAGATTGCTACTCTATCTATCCCTTTCAAGTATAT
66 TAAAGTCTGTAAAAACATTGTCT-TTTCCCAAGATTGCTACTCTATCTATCCCTTTCAAGTATAT
*
7206949 TTTGTAGGTCTTTATTAT
130 TTTGTAGGTTTTTATTAT
7206967 TAATGCTCTT
Statistics
Matches: 136, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
145 64 0.47
146 4 0.03
147 1 0.01
148 67 0.49
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (148 bp):
AAACTGTGTTAGGTAACTTTTTGAGGAATCATGTCAAAAAATACACCATCTTTGTTAGCTTTTTG
TAAAGTCTGTAAAAACATTGTCTTTTCCCAAGATTGCTACTCTATCTATCCCTTTCAAGTATATT
TTGTAGGTTTTTATTATC
Found at i:7213349 original size:45 final size:45
Alignment explanation
Indices: 7213292--7213383 Score: 175
Period size: 45 Copynumber: 2.0 Consensus size: 45
7213282 AATAATATAT
*
7213292 TATATATGGATGTATTGCTTGATTATGTTATTATAACTTCTCTTA
1 TATATATGGATGTATTGCTTGATTATGTTATGATAACTTCTCTTA
7213337 TATATATGGATGTATTGCTTGATTATGTTATGATAACTTCTCTTA
1 TATATATGGATGTATTGCTTGATTATGTTATGATAACTTCTCTTA
7213382 TA
1 TA
7213384 GTTATAATTT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.27, C:0.09, G:0.14, T:0.50
Consensus pattern (45 bp):
TATATATGGATGTATTGCTTGATTATGTTATGATAACTTCTCTTA
Found at i:7220919 original size:2 final size:2
Alignment explanation
Indices: 7220914--7220942 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7220904 TCATTGAGCT
7220914 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7220943 TTCAATATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7230203 original size:20 final size:20
Alignment explanation
Indices: 7230178--7230218 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
7230168 TTAATTTTAG
7230178 AACTAAAGAATTGTTATTAT
1 AACTAAAGAATTGTTATTAT
*
7230198 AACTAAAGGATTGTTATTAT
1 AACTAAAGAATTGTTATTAT
7230218 A
1 A
7230219 TTCCTATCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.44, C:0.05, G:0.12, T:0.39
Consensus pattern (20 bp):
AACTAAAGAATTGTTATTAT
Found at i:7241306 original size:33 final size:32
Alignment explanation
Indices: 7241260--7241329 Score: 79
Period size: 33 Copynumber: 2.2 Consensus size: 32
7241250 ATCCAAATTC
* *
7241260 AAATTGATTTAAAC-TCAATTTAATTCGAAATCA
1 AAATTAATCTAAACTTCAA-TTAATTC-AAATCA
* *
7241293 AAATTAATCTAAACTTGAATTGATTCAAATCA
1 AAATTAATCTAAACTTCAATTAATTCAAATCA
7241325 AAATT
1 AAATT
7241330 TATTTGAATC
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
32 11 0.34
33 18 0.56
34 3 0.09
ACGTcount: A:0.47, C:0.11, G:0.06, T:0.36
Consensus pattern (32 bp):
AAATTAATCTAAACTTCAATTAATTCAAATCA
Found at i:7246348 original size:30 final size:31
Alignment explanation
Indices: 7246297--7246354 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 31
7246287 TTAATTCATT
*
7246297 ATTATTTATTAATAATTAATAAA-TATACAA
1 ATTAATTATTAATAATTAATAAACTATACAA
*
7246327 ATTAATTATTAAT-TTTAAATAAACTATA
1 ATTAATTATTAATAATT-AATAAACTATA
7246355 ATTTAGAGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 2 0.08
30 18 0.75
31 4 0.17
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (31 bp):
ATTAATTATTAATAATTAATAAACTATACAA
Found at i:7248861 original size:24 final size:23
Alignment explanation
Indices: 7248808--7248858 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 23
7248798 AATATATTTT
7248808 TATTTAATTTTAATTATAAAATA
1 TATTTAATTTTAATTATAAAATA
7248831 TATTTAATATATTAA-TATAAAA-A
1 TATTTAAT-T-TTAATTATAAAATA
7248854 TATTT
1 TATTT
7248859 TAACGATTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
23 14 0.54
24 8 0.31
25 4 0.15
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
TATTTAATTTTAATTATAAAATA
Found at i:7255560 original size:27 final size:26
Alignment explanation
Indices: 7255513--7255565 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
7255503 ATTTATAATT
* *
7255513 AAAATTTAATAACTTTAAATTAAATA
1 AAAAATTAATAAATTTAAATTAAATA
*
7255539 AAAAATTAATTAAATTTTAATTAAATA
1 AAAAATTAA-TAAATTTAAATTAAATA
7255566 TTAAATATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 8 0.35
27 15 0.65
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (26 bp):
AAAAATTAATAAATTTAAATTAAATA
Found at i:7256113 original size:48 final size:48
Alignment explanation
Indices: 7256042--7256138 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
7256032 ACTATTTGCC
7256042 TGACCTATCATGAAAATTTATATGAAGTTGGTAGCATATATTGTTCAA
1 TGACCTATCATGAAAATTTATATGAAGTTGGTAGCATATATTGTTCAA
7256090 TGACCTATCATGAAAATTTATATGAAGTTGGTAGCATATATTGTTCAA
1 TGACCTATCATGAAAATTTATATGAAGTTGGTAGCATATATTGTTCAA
7256138 T
1 T
7256139 AAATTGTTAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.38
Consensus pattern (48 bp):
TGACCTATCATGAAAATTTATATGAAGTTGGTAGCATATATTGTTCAA
Found at i:7258039 original size:16 final size:17
Alignment explanation
Indices: 7258020--7258052 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
7258010 TGATTAATTT
*
7258020 TTATATAATT-TAATAA
1 TTATAAAATTATAATAA
7258036 TTATAAAATTATAATAA
1 TTATAAAATTATAATAA
7258053 AAAATTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
TTATAAAATTATAATAA
Found at i:7260156 original size:18 final size:20
Alignment explanation
Indices: 7260133--7260174 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
7260123 TTATTAAGTT
7260133 AAAAATAA-TT-AAATAACA
1 AAAAATAAGTTAAAATAACA
7260151 AAAAATAAGTTAAAAATAACA
1 AAAAATAAGTT-AAAATAACA
7260172 AAA
1 AAA
7260175 TATATTTCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 2 0.10
21 11 0.52
ACGTcount: A:0.74, C:0.05, G:0.02, T:0.19
Consensus pattern (20 bp):
AAAAATAAGTTAAAATAACA
Found at i:7265306 original size:8 final size:8
Alignment explanation
Indices: 7265277--7265309 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
7265267 ATTTTAAAAG
7265277 ATATCA-A
1 ATATCACA
*
7265284 ATATCAAA
1 ATATCACA
7265292 ATATCACA
1 ATATCACA
7265300 ATATCACA
1 ATATCACA
7265308 AT
1 AT
7265310 GTTTTCACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
7 6 0.25
8 18 0.75
ACGTcount: A:0.55, C:0.18, G:0.00, T:0.27
Consensus pattern (8 bp):
ATATCACA
Found at i:7265671 original size:18 final size:19
Alignment explanation
Indices: 7265638--7265674 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
7265628 GGATTGAAGG
*
7265638 ATAAAGATGTTGACATGGA
1 ATAAAGATGCTGACATGGA
7265657 ATAAA-ATGCTGACATGGA
1 ATAAAGATGCTGACATGGA
7265675 TTTTTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.43, C:0.08, G:0.24, T:0.24
Consensus pattern (19 bp):
ATAAAGATGCTGACATGGA
Found at i:7268468 original size:442 final size:443
Alignment explanation
Indices: 7267618--7268822 Score: 1633
Period size: 442 Copynumber: 2.7 Consensus size: 443
7267608 AATTCATTGA
* *
7267618 TAATATATAACATTTATTCATTTATAATGCATTAAATATAATTTTTTTAAATTGGTTTTCGTACT
1 TAATATATAACATTTATTCATTAATAATGCATTAAATATAATTTTTTTAAATTGTTTTTCGTACT
* *
7267683 TGCAAATTTCAAACCATTTGCTACCATTTCAATGAGCATTGAACTC--AATTAAAAATTAAAAAT
66 TGCAAATTTCAAACAATTTGCTACCATTTTAATGAGCATTGAACTCATAATTAAAAATTAAAAA-
* * * * * *
7267746 TAATAAAATTTTAAATTAATTTGAATTTGAATTTGACATGATCAAATTTTAAATTATTCATAATT
130 TAATAAAATTTTAAATTAATTTGAAATTGAATTAGAGATTATCAAAATTTAAATTGTTCATAATT
* * * *
7267811 AAGGCAACAAGATTGTAAAGAGTTTTTTTAATTAATATAAAATTTATTAATTTTCATAAATTTGA
195 AAGGTAACAAGATTGTAAAGAGTTTATTTAATTAATATAAAATTTATTAATTTTCATAAATATAA
* * * *** *
7267876 AATAATCTAAACCTGTAATAATATGTTATTCAAAATT-AAACAATTCAAACTAGCCAACTATCCC
260 AATAATCTAAACCTATAATAATATATTATTCAAAATTAAAACAATTAAAACTAATTAACTATCCA
* * * * * * *
7267940 TTAGATAAATTGGCATGTCATTGGAGTTGGTATTTAGAGATTGTAAGTTTGAGAAAACTTAGACG
325 TTAGATAAATTAGCATATCATTGGAGTTGGCACTTAGAGATTGCAAGTTTAAGAAAACTTAAACG
** * * * * *
7268005 TTTAATGTTCTTTTAAGTCATATATATAATTTGG-T-AGG-AGGTTTAAGAATATAT
390 CATAATATCCTTTTAAGTC--ATATAT-AGTTGGATAAGGAAGATTTAAGAATAAAT
*
7268059 TAATATATAACATTTATTCATTAATAATGTATTAAATATAATTTTTTTAAATTGTTTTTCGTACT
1 TAATATATAACATTTATTCATTAATAATGCATTAAATATAATTTTTTTAAATTGTTTTTCGTACT
* *
7268124 TGCAAATTTCAAACTA-TTGTTACCATTTTAATGAGCATTGAACTCATAATTAAAAATTGAAAAA
66 TGCAAATTTCAAACAATTTGCTACCATTTTAATGAGCATTGAACTCATAATTAAAAATT-AAAAA
7268188 TAATAAAATTTTAAATTAATTTGAAATTGAATTAGAGATTATCAAAATTTAAATTGTTCATAATT
130 TAATAAAATTTTAAATTAATTTGAAATTGAATTAGAGATTATCAAAATTTAAATTGTTCATAATT
* * * *
7268253 AAGGTTAGAAGATTGTAAAGAGTTTATTTAATTAATATTAAATTTATTAATTTTCATAAATACAA
195 AAGGTAACAAGATTGTAAAGAGTTTATTTAATTAATATAAAATTTATTAATTTTCATAAATATAA
* *
7268318 AATAATCCAAACCTATAATAATATATTATTCAAAATTAAAACAATTAAAACTAATTGACTATCCA
260 AATAATCTAAACCTATAATAATATATTATTCAAAATTAAAACAATTAAAACTAATTAACTATCCA
* * * * * * * *
7268383 TTGGGTCAATTAGTATATCA-TGAGAGTTGGCACTTGGAGATTGCAATTTTAAG-AGAGTTAAAC
325 TTAGATAAATTAGCATATCATTG-GAGTTGGCACTTAGAGATTGCAAGTTTAAGAAAACTTAAAC
**
7268446 GCATAATATCCTGTTT-AGTCATATATAGTTGGATAAGGAAGATTTAAGCGTAAAT
389 GCATAATATCCT-TTTAAGTCATATATAGTTGGATAAGGAAGATTTAAGAATAAAT
*
7268501 TAATATATAACATTTATTCATTAATAATGCATTAAATATAA-TTTTTTAAACTGATTTTT-GTAC
1 TAATATATAACATTTATTCATTAATAATGCATTAAATATAATTTTTTTAAATTG-TTTTTCGTAC
* * *
7268564 TAGCAAATTTCAAACAATTTGCTACTATTTTAATGAACATTGAACTCATAATTAAAAATTAAAAA
65 TTGCAAATTTCAAACAATTTGCTACCATTTTAATGAGCATTGAACTCATAATTAAAAATT-AAAA
* *
7268629 ATAATAAAATTTTGAATTAATTTAAAATTGAATTAGAGATTATCAAAATTTAAATTGTTCATAAT
129 ATAATAAAATTTTAAATTAATTTGAAATTGAATTAGAGATTATCAAAATTTAAATTGTTCATAAT
* * *
7268694 TAACGTCACAAGATTGTAAAGAGTTTATTTAATTAATATAAAATTTATTAATTTTTATAAATATA
194 TAAGGTAACAAGATTGTAAAGAGTTTATTTAATTAATATAAAATTTATTAATTTTCATAAATATA
* * * * *
7268759 AAATAATCTAAACCTATAATAATATATTATTTAAAATTAAAATAATTTAAATTAATTAATTATC
259 AAATAATCTAAACCTATAATAATATATTATTCAAAATTAAAACAATTAAAACTAATTAACTATC
7268823 TCTTAAATTA
Statistics
Matches: 677, Mismatches: 76, Indels: 21
0.87 0.10 0.03
Matches are distributed among these distances:
439 5 0.01
440 34 0.05
441 110 0.16
442 461 0.68
443 67 0.10
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.40
Consensus pattern (443 bp):
TAATATATAACATTTATTCATTAATAATGCATTAAATATAATTTTTTTAAATTGTTTTTCGTACT
TGCAAATTTCAAACAATTTGCTACCATTTTAATGAGCATTGAACTCATAATTAAAAATTAAAAAT
AATAAAATTTTAAATTAATTTGAAATTGAATTAGAGATTATCAAAATTTAAATTGTTCATAATTA
AGGTAACAAGATTGTAAAGAGTTTATTTAATTAATATAAAATTTATTAATTTTCATAAATATAAA
ATAATCTAAACCTATAATAATATATTATTCAAAATTAAAACAATTAAAACTAATTAACTATCCAT
TAGATAAATTAGCATATCATTGGAGTTGGCACTTAGAGATTGCAAGTTTAAGAAAACTTAAACGC
ATAATATCCTTTTAAGTCATATATAGTTGGATAAGGAAGATTTAAGAATAAAT
Found at i:7269731 original size:20 final size:20
Alignment explanation
Indices: 7269708--7269745 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7269698 TAAATTTAAA
7269708 TTTTATAATTAT-TTTTTTAT
1 TTTTA-AATTATCTTTTTTAT
*
7269728 TTTTAGATTATCTTTTTT
1 TTTTAAATTATCTTTTTT
7269746 TATGTAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (20 bp):
TTTTAAATTATCTTTTTTAT
Found at i:7270915 original size:11 final size:11
Alignment explanation
Indices: 7270899--7270931 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
7270889 ACAGATTACA
*
7270899 AAATCATAATT
1 AAATCATAATC
7270910 AAATCATAATC
1 AAATCATAATC
7270921 AAATCA-AATC
1 AAATCATAATC
7270931 A
1 A
7270932 CATGCAATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 5 0.24
11 16 0.76
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (11 bp):
AAATCATAATC
Found at i:7271465 original size:5 final size:5
Alignment explanation
Indices: 7271447--7271503 Score: 57
Period size: 5 Copynumber: 11.6 Consensus size: 5
7271437 TCACTCCATT
* *
7271447 TTTTA TTTTGA TTTTA TTTT- TCTTA TTTTA -TTTA TTTTA TTTT- GTTTA
1 TTTTA TTTT-A TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
7271495 TTTTTA TTT
1 -TTTTA TTT
7271504 ACTCTTATTA
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
4 10 0.23
5 24 0.56
6 9 0.21
ACGTcount: A:0.16, C:0.02, G:0.04, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:7271476 original size:14 final size:14
Alignment explanation
Indices: 7271448--7271503 Score: 69
Period size: 14 Copynumber: 3.9 Consensus size: 14
7271438 CACTCCATTT
7271448 TTTATTTTGATTTTA
1 TTTATTTT-ATTTTA
7271463 TTT-TTCTTATTTTA
1 TTTATT-TTATTTTA
*
7271477 TTTATTTTATTTTG
1 TTTATTTTATTTTA
7271491 TTTATTTTTATTT
1 TTTA-TTTTATTT
7271504 ACTCTTATTA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
14 22 0.59
15 15 0.41
ACGTcount: A:0.16, C:0.02, G:0.04, T:0.79
Consensus pattern (14 bp):
TTTATTTTATTTTA
Found at i:7271504 original size:10 final size:9
Alignment explanation
Indices: 7271445--7271503 Score: 55
Period size: 9 Copynumber: 6.1 Consensus size: 9
7271435 TTTCACTCCA
7271445 TTTTTTATT
1 TTTTTTATT
7271454 TTGATTTTATT
1 TT--TTTTATT
*
7271465 TTTCTTATT
1 TTTTTTATT
*
7271474 TTATTTATT
1 TTTTTTATT
*
7271483 TTATTTTGTT
1 TT-TTTTATT
7271493 TATTTTTATT
1 T-TTTTTATT
7271503 T
1 T
7271504 ACTCTTATTA
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
9 17 0.43
10 13 0.32
11 10 0.25
ACGTcount: A:0.15, C:0.02, G:0.03, T:0.80
Consensus pattern (9 bp):
TTTTTTATT
Found at i:7272604 original size:97 final size:98
Alignment explanation
Indices: 7272420--7272616 Score: 360
Period size: 97 Copynumber: 2.0 Consensus size: 98
7272410 ATTATCCAAG
*
7272420 TCTTGTTTAATAAATTTAAGATATTTTTTCTTTCTTTCCTATTTCTTTTCCTTGCTTATATTTTG
1 TCTTGTTTAATAAATTTAAGATATTTTTTCTTTCTTTCCTATTTCTTTTCCTTGCTTACATTTTG
* *
7272485 TGTAGCAATTCGTTTATTTATTTCATGTATCTA
66 TGCAACAATTCGTTTATTTATTTCATGTATCTA
7272518 TCTTGTTTAATAAATTTAAGATATTTTTTCTTTCTTTCCTATTT-TTTTCCTTGCTTACATTTTG
1 TCTTGTTTAATAAATTTAAGATATTTTTTCTTTCTTTCCTATTTCTTTTCCTTGCTTACATTTTG
7272582 TGCAACAATTCGTTTATTTATTTCATGTATCTA
66 TGCAACAATTCGTTTATTTATTTCATGTATCTA
7272615 TC
1 TC
7272617 ATTCATTTAC
Statistics
Matches: 96, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
97 52 0.54
98 44 0.46
ACGTcount: A:0.21, C:0.14, G:0.08, T:0.57
Consensus pattern (98 bp):
TCTTGTTTAATAAATTTAAGATATTTTTTCTTTCTTTCCTATTTCTTTTCCTTGCTTACATTTTG
TGCAACAATTCGTTTATTTATTTCATGTATCTA
Found at i:7275463 original size:9 final size:9
Alignment explanation
Indices: 7275440--7275495 Score: 69
Period size: 9 Copynumber: 6.3 Consensus size: 9
7275430 AATTTTTCTT
7275440 AAAAAAATG
1 AAAAAAATG
* *
7275449 ATAAAAAGG
1 AAAAAAATG
7275458 AAAAAAATG
1 AAAAAAATG
**
7275467 ATGAAAA-G
1 AAAAAAATG
7275475 AAAAAAATG
1 AAAAAAATG
7275484 AAAAAAATG
1 AAAAAAATG
7275493 AAA
1 AAA
7275496 GAGAAATTAA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
8 6 0.16
9 32 0.84
ACGTcount: A:0.75, C:0.00, G:0.14, T:0.11
Consensus pattern (9 bp):
AAAAAAATG
Found at i:7275463 original size:17 final size:17
Alignment explanation
Indices: 7275441--7275495 Score: 65
Period size: 17 Copynumber: 3.2 Consensus size: 17
7275431 ATTTTTCTTA
7275441 AAAAAATGATAAAAAGG
1 AAAAAATGATAAAAAGG
* *
7275458 AAAAAAATGATGAAAAGA
1 -AAAAAATGATAAAAAGG
* *
7275476 AAAAAATGAAAAAAATG
1 AAAAAATGATAAAAAGG
7275493 AAA
1 AAA
7275496 GAGAAATTAA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
17 16 0.52
18 15 0.48
ACGTcount: A:0.75, C:0.00, G:0.15, T:0.11
Consensus pattern (17 bp):
AAAAAATGATAAAAAGG
Found at i:7275463 original size:18 final size:17
Alignment explanation
Indices: 7275440--7275495 Score: 76
Period size: 18 Copynumber: 3.2 Consensus size: 17
7275430 AATTTTTCTT
7275440 AAAAAAATGATAAAAAGG
1 AAAAAAATGATAAAAA-G
*
7275458 AAAAAAATGATGAAAAG
1 AAAAAAATGATAAAAAG
*
7275475 AAAAAAATGAAAAAAATG
1 AAAAAAATGATAAAAA-G
7275493 AAA
1 AAA
7275496 GAGAAATTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
17 15 0.44
18 19 0.56
ACGTcount: A:0.75, C:0.00, G:0.14, T:0.11
Consensus pattern (17 bp):
AAAAAAATGATAAAAAG
Found at i:7276850 original size:66 final size:66
Alignment explanation
Indices: 7276776--7276900 Score: 173
Period size: 66 Copynumber: 1.9 Consensus size: 66
7276766 TGACTTGAGG
** *
7276776 TTTGATCCC-GATCATTCATCTTCAATTTTGACTCGGTCCT-GATCGCTTTATCTTTCTAATTTG
1 TTTGATCCCAG-TCATTCATCTTCAATTTCAACTCGATCCTAG-TCGCTTTATCTTTCTAATTTG
7276839 TAA
64 TAA
* *
7276842 TTTGATCCCAGTCATTCATCTTGAATTTCAACTCGATCCTAGTCGCTTTGTCTTTCTAA
1 TTTGATCCCAGTCATTCATCTTCAATTTCAACTCGATCCTAGTCGCTTTATCTTTCTAA
7276901 CTCGTGGTTC
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
66 50 0.96
67 2 0.04
ACGTcount: A:0.20, C:0.24, G:0.12, T:0.44
Consensus pattern (66 bp):
TTTGATCCCAGTCATTCATCTTCAATTTCAACTCGATCCTAGTCGCTTTATCTTTCTAATTTGTA
A
Found at i:7277260 original size:86 final size:86
Alignment explanation
Indices: 7277108--7277330 Score: 293
Period size: 86 Copynumber: 2.6 Consensus size: 86
7277098 TTTTATTATG
* * * **
7277108 AAACCTTTACGAATCTAGGATCTTTGCGAAACTTGAAATCTTACGAATATTCCATTCTTATGAAT
1 AAACCTTTACGAATCTAGAATCTTTGTGAAACTTGAAATCTTACGAATCTTCCATTCTTACAAAT
7277173 CTAAAAGTCCTTGCAAACCTA
66 CTAAAAGTCCTTGCAAACCTA
** * * *
7277194 AAACCTTTGTGAATTTAGAATCTTTGTAAAACTTGAAATCTTACGAATCTTCCATTCTTGCAAAT
1 AAACCTTTACGAATCTAGAATCTTTGTGAAACTTGAAATCTTACGAATCTTCCATTCTTACAAAT
* * *
7277259 CTGAAAGTCCTTGCGAACTTA
66 CTAAAAGTCCTTGCAAACCTA
* * * *
7277280 AAACCTTTACGAATCTAGAACCGTTGTGAAACTAGAAATCTTGCGAATCTT
1 AAACCTTTACGAATCTAGAATCTTTGTGAAACTTGAAATCTTACGAATCTT
7277331 GAATCTTTGC
Statistics
Matches: 116, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
86 116 1.00
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33
Consensus pattern (86 bp):
AAACCTTTACGAATCTAGAATCTTTGTGAAACTTGAAATCTTACGAATCTTCCATTCTTACAAAT
CTAAAAGTCCTTGCAAACCTA
Found at i:7280588 original size:23 final size:23
Alignment explanation
Indices: 7280558--7280603 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
7280548 CTAAATGGAC
7280558 TTTACACCATTAAGTCAAGAAAA
1 TTTACACCATTAAGTCAAGAAAA
*
7280581 TTTACACCATTCAGTCAAGAAAA
1 TTTACACCATTAAGTCAAGAAAA
7280604 GATCGAAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.46, C:0.20, G:0.09, T:0.26
Consensus pattern (23 bp):
TTTACACCATTAAGTCAAGAAAA
Found at i:7293451 original size:1 final size:1
Alignment explanation
Indices: 7293447--7293476 Score: 51
Period size: 1 Copynumber: 30.0 Consensus size: 1
7293437 TTTTTTTTTT
*
7293447 GGGGGGGGGGGGGGGGGGGGGGAGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
7293477 TTATGCAATG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.03, C:0.00, G:0.97, T:0.00
Consensus pattern (1 bp):
G
Found at i:7302312 original size:54 final size:55
Alignment explanation
Indices: 7302222--7302327 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 55
7302212 GAAAATTAAA
* *
7302222 AAAAATATACAAATAAAGATAAAATCAAATTTATATTACATAAGCCAAAAATTTT
1 AAAAATATACAAAGAAAGATAAAATCAAATTAATATTACATAAGCCAAAAATTTT
* * *
7302277 AAAAA-ATACAAAGAAA-ATAAAAATCATATTAATATTACATAATCCATAAAT
1 AAAAATATACAAAGAAAGAT-AAAATCAAATTAATATTACATAAGCCAAAAAT
7302328 CAACTTAATG
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
53 2 0.04
54 38 0.84
55 5 0.11
ACGTcount: A:0.60, C:0.09, G:0.03, T:0.27
Consensus pattern (55 bp):
AAAAATATACAAAGAAAGATAAAATCAAATTAATATTACATAAGCCAAAAATTTT
Found at i:7302367 original size:15 final size:16
Alignment explanation
Indices: 7302347--7302377 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
7302337 GAAAATACAA
7302347 AAAAAAAAAT-TAAAC
1 AAAAAAAAATCTAAAC
7302362 AAAAAAAAATCTAAAC
1 AAAAAAAAATCTAAAC
7302378 GTACCAACCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.77, C:0.10, G:0.00, T:0.13
Consensus pattern (16 bp):
AAAAAAAAATCTAAAC
Found at i:7304270 original size:106 final size:106
Alignment explanation
Indices: 7304140--7304353 Score: 383
Period size: 106 Copynumber: 2.0 Consensus size: 106
7304130 ACATATCCTA
* *
7304140 TGAAATGGTGTTGAGTAAAACCATGAGGGCCAAAGTAAATTTTGTCCTGATGGACATAACTCATG
1 TGAAATGGTGTTGAGTAAAACCATGAGGGCCAAAGCAAATTTTATCCTGATGGACATAACTCATG
*
7304205 CGTATTGAGATCAGTTATTAATGTGTGCACTTGTTATATGG
66 CGTATTGAGATCAGTTATTAATGTGTGCACTTATTATATGG
*
7304246 TGAAATGTTGTTGAGTAAAACCATGAGGGCCAAAGCAAATTTTATCCTGATGGACATAACTCATG
1 TGAAATGGTGTTGAGTAAAACCATGAGGGCCAAAGCAAATTTTATCCTGATGGACATAACTCATG
*
7304311 CGTATTGAGATCAGTTATTAATGTGTGTACTTATTATATGG
66 CGTATTGAGATCAGTTATTAATGTGTGCACTTATTATATGG
7304352 TG
1 TG
7304354 TAGTTGCCCT
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
106 103 1.00
ACGTcount: A:0.31, C:0.12, G:0.23, T:0.34
Consensus pattern (106 bp):
TGAAATGGTGTTGAGTAAAACCATGAGGGCCAAAGCAAATTTTATCCTGATGGACATAACTCATG
CGTATTGAGATCAGTTATTAATGTGTGCACTTATTATATGG
Found at i:7306741 original size:548 final size:547
Alignment explanation
Indices: 7305365--7307004 Score: 2470
Period size: 548 Copynumber: 3.0 Consensus size: 547
7305355 GTCATGGTAA
* *
7305365 GCTTGGGGATGGTTGGTCTGGCAGGCCTCATATCGCGCCTTCATGTTGAGCCATAGGGTTAGACG
1 GCTTGGGGATGGTTGGTCTGGCAGGCCTCATATCGCGCCTTCATGTTGAGCCATAGGGTTAGGCA
* * * * *
7305430 GTAGCGTTCATTATGTCCCTCGA-TTTTTTCTCATTAAGTCGAAAGGATCATAAGAT-GTGTTTA
66 GTAGCGTTCGTTATGTCCCTCGATTTTTTTTTC-TTGAGCCGAAAGGATCATAAGATGGTGTTTG
* * *
7305493 TGTAAAAAAGACACCATCGAGACTG-AGGAATGAGTGGGCTAGCAAGTAGGCAGGTTGCTAGATC
130 TGTAAGAAGGACACCATCGAGACTGAAGG-ATGAGTGGGCTAGCAAGTAGGCAGGCTGCTAGATC
* * * * * *
7305557 CTTATGGCCAATCAATAGAGGGGTGCTGCAATTGAAGTAGCACACCAAAATCCCTGAGGCGGGAC
194 CTTATGGCCAATCAGTAGAGGGGTGCTACGACTGAGGTAGCACACCAAAGTCCCTGAGGCGGGAC
* * * * *
7305622 AAGCATGATGTTGAGTATCCATCATGCGTGTGGATAGCCTAAAATGAGGTTAAGGGCTAAGGCCT
259 AAGCATGATGTTGAGTGTCCATCATACGTGTGGACAACCTAAAATGAGGCTAAGGGCTAAGGCCT
* *
7305687 TAAGAAATGAGTTTTGTGGAATGAGATGAGCCTAGAGGTTTCGGGCTAACTACTGATCAATGTCT
324 TAAGAAATGAGTTTTGTGGAATGAGATGAGCCTAGAGGCTTCGGGCTAGCTACTGATCAATGTCT
* * *
7305752 CCATTATGCCTGTGGGATCTTGACACGAGAGCTTGCATACAATACGGACGGGCATAATATTGGGT
389 CCATTATGCCTATGGGATCTTGACACGAGAGCTTGCATACAATACGG-CGGGCATAGTGTTGGGT
*
7305817 TCTCACCATGCCAAGAAGTAATAATGTTATGAGAACCAAGGCTGAGTG-CCCTATGAGAATTCAA
453 TTTCACCATGCCAAGAAGTAATAATGTTATGAGAACCAAGGCTGAGTGCCCCTATGAGAATTCAA
* *
7305881 GGGTTGATTGTCGGGCCTTGATGCTTGTGG
518 GGGTCGATTGTCGGCCCTTGATGCTTGTGG
* * *
7305911 GCTTGGGGATGGTTAGTTTAGTG-A-GCCTCATATCGCGCCTTCATGTTGAGCCATAGGGTTAAG
1 GCTTGGGGATGGTTGGTCT-G-GCAGGCCTCATATCGCGCCTTCATGTTGAGCCATAGGGTTAGG
* * * * * *
7305974 TAGTAGCATTCGTTATATCCCTCAATTTTTTTTCCTTGAGCTGAAAGGATCATAAGATGGTGTTT
64 CAGTAGCGTTCGTTATGTCCCTCGATTTTTTTTTCTTGAGCCGAAAGGATCATAAGATGGTGTTT
* * *
7306039 GTGTAAGAAGGACACCATCGAGACTGAGGGATGAATGGGCTAGCAAGTAGGCAGGCTGTTAGATC
129 GTGTAAGAAGGACACCATCGAGACTGAAGGATGAGTGGGCTAGCAAGTAGGCAGGCTGCTAGATC
* * * * * *
7306104 CTTATGACCAATCAGTAAAGGGGTGCTACGACTGAGGTAGCACACCAAAGT-CTTGAGACAGGTC
194 CTTATGGCCAATCAGTAGAGGGGTGCTACGACTGAGGTAGCACACCAAAGTCCCTGAGGCGGGAC
*
7306168 AAACATGATGTTGAGTGTCCATCATACGTGTGGACAACCTAAAATGAGGCTAAGGGCTAAGGCCT
259 AAGCATGATGTTGAGTGTCCATCATACGTGTGGACAACCTAAAATGAGGCTAAGGGCTAAGGCCT
*
7306233 TAAGAAATGAGTTTTGTGGAATGAGATGAGCCTAAAGGCTTCGGGCTAGCTACTGATCAATGTCT
324 TAAGAAATGAGTTTTGTGGAATGAGATGAGCCTAGAGGCTTCGGGCTAGCTACTGATCAATGTCT
*
7306298 CCATTATGCCTATGGGATCTTGATACGAGAGCTTGCATACAATACAGGCGGGCATAGTGTTGGGT
389 CCATTATGCCTATGGGATCTTGACACGAGAGCTTGCATACAATAC-GGCGGGCATAGTGTTGGGT
* *
7306363 TTTCACCATGCCAAGAAGTAATAATGTTATGAGAACCAAGGCTGAATGCCCCTTTGAGAATTCAA
453 TTTCACCATGCCAAGAAGTAATAATGTTATGAGAACCAAGGCTGAGTGCCCCTATGAGAATTCAA
*
7306428 GGGCCGATTGTCGAGCCCTTGATGCTTGTGG
518 GGGTCGATTGTCG-GCCCTTGATGCTTGTGG
* * *
7306459 GCTTGGGGACGGTTGGTCTGGCAGGCCTCATATTGCGCCTTCATGTTGAGCCATAAGGTTAGGCA
1 GCTTGGGGATGGTTGGTCTGGCAGGCCTCATATCGCGCCTTCATGTTGAGCCATAGGGTTAGGCA
* *
7306524 GTAGCGTTCGTTATGTCCCTCGATTTTTTTTTCTTGAGCCAAAAGGATCATAAAATGGTGTTTGT
66 GTAGCGTTCGTTATGTCCCTCGATTTTTTTTTCTTGAGCCGAAAGGATCATAAGATGGTGTTTGT
* *
7306589 GTAAGATGGACACCATCGAGACTGAAGGATGAGTGGGCTAGCAAGTAGGCAGGCTACTAGATCCT
131 GTAAGAAGGACACCATCGAGACTGAAGGATGAGTGGGCTAGCAAGTAGGCAGGCTGCTAGATCCT
*
7306654 TATGGCCAATTAGTAGAGGGGTGCTACGACTGAGGTAGCACACCAAAGTCCCTGAGGCGGGACAA
196 TATGGCCAATCAGTAGAGGGGTGCTACGACTGAGGTAGCACACCAAAGTCCCTGAGGCGGGACAA
*
7306719 GCATGATGTTGAGTGT-CATCATACGTGTGGACAACCTAAAATGAGGCTAAGGGCTAAAGCCTTA
261 GCATGATGTTGAGTGTCCATCATACGTGTGGACAACCTAAAATGAGGCTAAGGGCTAAGGCCTTA
* *
7306783 AGAAATGAGTTTTGTGGGATGAGATGAGCCTAGAGGCTTTGGGCTAGCTACTGATCAATGTCTCC
326 AGAAATGAGTTTTGTGGAATGAGATGAGCCTAGAGGCTTCGGGCTAGCTACTGATCAATGTCTCC
* * * * *
7306848 GTTATGTCTATGGGATCTTGACACAAGAGCTTGCATACAATACGGGTGGGTATAGTGTTGGGTTC
391 ATTATGCCTATGGGATCTTGACACGAGAGCTTGCATACAATAC-GGCGGGCATAGTGTTGGGTT-
* * *
7306913 TT-ACCATGCCAAGAAGTAATAATATTATGAGAACCAAAGCTGAGTGCACCTATGAGAATTCAAG
454 TTCACCATGCCAAGAAGTAATAATGTTATGAGAACCAAGGCTGAGTGCCCCTATGAGAATTCAAG
*
7306977 GGTCTATTGTCGGGCCCTTGATGCTTGT
519 GGTCGATTGTC-GGCCCTTGATGCTTGT
7307005 AGACAGAGAT
Statistics
Matches: 983, Mismatches: 98, Indels: 24
0.89 0.09 0.02
Matches are distributed among these distances:
546 328 0.33
547 143 0.15
548 483 0.49
549 29 0.03
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (547 bp):
GCTTGGGGATGGTTGGTCTGGCAGGCCTCATATCGCGCCTTCATGTTGAGCCATAGGGTTAGGCA
GTAGCGTTCGTTATGTCCCTCGATTTTTTTTTCTTGAGCCGAAAGGATCATAAGATGGTGTTTGT
GTAAGAAGGACACCATCGAGACTGAAGGATGAGTGGGCTAGCAAGTAGGCAGGCTGCTAGATCCT
TATGGCCAATCAGTAGAGGGGTGCTACGACTGAGGTAGCACACCAAAGTCCCTGAGGCGGGACAA
GCATGATGTTGAGTGTCCATCATACGTGTGGACAACCTAAAATGAGGCTAAGGGCTAAGGCCTTA
AGAAATGAGTTTTGTGGAATGAGATGAGCCTAGAGGCTTCGGGCTAGCTACTGATCAATGTCTCC
ATTATGCCTATGGGATCTTGACACGAGAGCTTGCATACAATACGGCGGGCATAGTGTTGGGTTTT
CACCATGCCAAGAAGTAATAATGTTATGAGAACCAAGGCTGAGTGCCCCTATGAGAATTCAAGGG
TCGATTGTCGGCCCTTGATGCTTGTGG
Found at i:7308454 original size:15 final size:15
Alignment explanation
Indices: 7308434--7308463 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7308424 AATTTTTAAT
7308434 AAATAAATAATAAAA
1 AAATAAATAATAAAA
*
7308449 AAATAAATGATAAAA
1 AAATAAATAATAAAA
7308464 GAATTATTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (15 bp):
AAATAAATAATAAAA
Found at i:7310268 original size:9 final size:9
Alignment explanation
Indices: 7310254--7310284 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
7310244 ATATCTCATG
7310254 AAAAATTAT
1 AAAAATTAT
7310263 AAAAATTAT
1 AAAAATTAT
7310272 -AAAATTAT
1 AAAAATTAT
7310280 AAAAA
1 AAAAA
7310285 CAATGAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (9 bp):
AAAAATTAT
Found at i:7312959 original size:13 final size:13
Alignment explanation
Indices: 7312941--7312988 Score: 55
Period size: 13 Copynumber: 3.6 Consensus size: 13
7312931 CAATGACTTA
7312941 GAAAATTATAAAT
1 GAAAATTATAAAT
7312954 GAAAATTAATTGAAA-
1 GAAAATT-A-T-AAAT
7312969 -AAAATTATAAAT
1 GAAAATTATAAAT
7312981 GAAAATTA
1 GAAAATTA
7312989 ATGGAAAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
11 3 0.10
12 1 0.03
13 15 0.50
14 7 0.23
15 1 0.03
16 3 0.10
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.29
Consensus pattern (13 bp):
GAAAATTATAAAT
Found at i:7312976 original size:27 final size:27
Alignment explanation
Indices: 7312942--7313004 Score: 108
Period size: 27 Copynumber: 2.3 Consensus size: 27
7312932 AATGACTTAG
*
7312942 AAAATTATAAATGAAAATTAATTGAAA
1 AAAATTATAAATGAAAATTAATGGAAA
7312969 AAAATTATAAATGAAAATTAATGGAAA
1 AAAATTATAAATGAAAATTAATGGAAA
*
7312996 ATAATTATA
1 AAAATTATA
7313005 TATTTAAGAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.30
Consensus pattern (27 bp):
AAAATTATAAATGAAAATTAATGGAAA
Found at i:7314534 original size:236 final size:231
Alignment explanation
Indices: 7313986--7314577 Score: 549
Period size: 235 Copynumber: 2.5 Consensus size: 231
7313976 ATATCTACAA
* ** *
7313986 ATGTTATAATAATATATTATTATTGTTGTTTTTAAT-TTTCATTACGTTTAAAATTTCATAAT-T
1 ATGTTACAATAATAT-TTATTATAATTGTTTTT-ATCTTTCATTATGTTTAAAATTTCATAATCT
* * ** * *
7314049 TTTTTAGCATATTATGACAATTTATACCAATTTTACGTCAAATAATATTAATTTTACTTTTTTTC
64 TTTTTAGCATGTTATGACAATTTTTACTTATTTTAAGTCAAATAATATTAATTTTAC-ATTTTTC
* * *
7314114 TCACTTGTTTACATTACCAATTATTTTTTAATTTTTAGCTATTTTTCTTATATATTTACAAAAAA
128 CCACTTGTTTACATTACCAATTATTTTTTAATTTTTAGCTATTTATCTTATATATATACAAAAAA
* *
7314179 ATAAATAATTAAAATTTTATATTAGCAACTTAATTAATT
193 ATAAATAATTAAAATTTTAAATTAGCAACATAATTAATT
** * * * * * * *
7314218 ACATTACAATAATTTATTTTTTATGATTGTTCTTACCTTTAATTATGTTTAGAATTATCAT--TT
1 ATGTTACAATAA--TATTTATTATAATTGTTTTTATCTTTCATTATGTTTAAAATT-TCATAATC
* *
7314281 TTCTTCTTGGCATGTTATGACAATTTTTTACTTATTTTAAGTCAAATTATATTAATTTTACATTT
63 TT-TT-TTAGCATGTTATGACAA-TTTTTACTTATTTTAAGTCAAATAATATTAATTTTACATTT
* * * * *
7314346 TTCCCACTTTTTTACTTTATCTATT-TGTTTTTCAATTTTTAGTTATATTAT-TTATATATATA-
125 TTCCCACTTGTTTACATTACCAATTAT-TTTTT-AATTTTTAGCTAT-TTATCTTATATATATAC
* * *
7314408 AAAACTAATAATTAGTTAAAATTTTAAATT-GCCAACATAA-TAATTT
187 AAAA-AAATAAATAATTAAAATTTTAAATTAG-CAACATAATTAA-TT
* * *
7314454 ATGTTACAATAATATGTTCTTATAATTATTTTTATCTTTCATTATATTTAAAATTGTCATAACTC
1 ATGTTACAATAATAT-TTATTATAATTGTTTTTATCTTTCATTATGTTTAAAATT-TCATAA-TC
* * * * *
7314519 TTTTTTAGTATGTTATAACACTTCTTA-TCTATTTTACA-TCAAATAATACTAATTTTACA
63 TTTTTTAGCATGTTATGACAATTTTTACT-TATTTTA-AGTCAAATAATATTAATTTTACA
7314578 CTCACTTGTT
Statistics
Matches: 289, Mismatches: 51, Indels: 37
0.77 0.14 0.10
Matches are distributed among these distances:
232 11 0.04
233 31 0.11
234 14 0.05
235 117 0.40
236 108 0.37
237 5 0.02
238 3 0.01
ACGTcount: A:0.34, C:0.10, G:0.05, T:0.52
Consensus pattern (231 bp):
ATGTTACAATAATATTTATTATAATTGTTTTTATCTTTCATTATGTTTAAAATTTCATAATCTTT
TTTAGCATGTTATGACAATTTTTACTTATTTTAAGTCAAATAATATTAATTTTACATTTTTCCCA
CTTGTTTACATTACCAATTATTTTTTAATTTTTAGCTATTTATCTTATATATATACAAAAAAATA
AATAATTAAAATTTTAAATTAGCAACATAATTAATT
Found at i:7314783 original size:212 final size:210
Alignment explanation
Indices: 7314391--7314787 Score: 505
Period size: 211 Copynumber: 1.9 Consensus size: 210
7314381 TTTTTAGTTA
* * * *
7314391 TATTATTTATATATATAAAAACTAATAATTAGTTAAAATTTTAAATTGCCAACATAATAATTTAT
1 TATTATTTATATACATAAAAAATAATAATTAATTAAAAATTTAAATTGCCAACATAATAATTTAT
* * * *
7314456 GTTACAATAATATGTTCTTATAATTATTTTTATCTTTCATTATATTTAAAATTGTCATAACTCTT
66 ATTACAATAATATATTCTTATAATTATTTTTATCTTTCATTACATTTAAAATTGTCATAACTATT
* *
7314521 TTTTAGTATGTTATAACACTTCTTATCTATTTTACATCAAATAATACTAATTTTACACTCACTTG
131 TTTTAGTATGTTAAAACACTTCTTATCTATTTTACACCAAATAATACTAATTTTACACTCACTTG
7314586 TTTACATTACTATTT
196 TTTACATTACTATTT
* * * *
7314601 TATTTTTTATATACATACAAAAATAATAATTAATTAAAAATTTACATTGCCATCATAATTATTTA
1 TATTATTTATATACATA-AAAAATAATAATTAATTAAAAATTTAAATTGCCAACATAATAATTTA
* * * * *
7314666 TATTATAATAATATATTTTTATGATT-TTTCTTA-CTTTCCATTACATTTAGAATTAGT-ATAGC
65 TATTACAATAATATATTCTTATAATTATTT-TTATCTTT-CATTACATTTAAAATT-GTCATAAC
* * * *
7314728 TATTTTCTTAGTGTTTTAAAACACTTTTTA-CTCATTTTACACCAAATGATACTAATTTTA
127 TATTTT-TTAGTATGTTAAAACACTTCTTATCT-ATTTTACACCAAATAATACTAATTTTA
7314788 TGTTTCTCAC
Statistics
Matches: 158, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
210 22 0.14
211 90 0.57
212 46 0.29
ACGTcount: A:0.37, C:0.11, G:0.04, T:0.48
Consensus pattern (210 bp):
TATTATTTATATACATAAAAAATAATAATTAATTAAAAATTTAAATTGCCAACATAATAATTTAT
ATTACAATAATATATTCTTATAATTATTTTTATCTTTCATTACATTTAAAATTGTCATAACTATT
TTTTAGTATGTTAAAACACTTCTTATCTATTTTACACCAAATAATACTAATTTTACACTCACTTG
TTTACATTACTATTT
Found at i:7324817 original size:30 final size:30
Alignment explanation
Indices: 7324783--7324842 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
7324773 GCTTAAGCAG
7324783 ACAGTTAGGGATCTATCATTGATGTTAAAA
1 ACAGTTAGGGATCTATCATTGATGTTAAAA
7324813 ACAGTTAGGGATCTATCATTGATGTTAAAA
1 ACAGTTAGGGATCTATCATTGATGTTAAAA
7324843 CTTTTAAATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.33
Consensus pattern (30 bp):
ACAGTTAGGGATCTATCATTGATGTTAAAA
Found at i:7325942 original size:3 final size:3
Alignment explanation
Indices: 7325934--7326023 Score: 85
Period size: 3 Copynumber: 30.0 Consensus size: 3
7325924 ACGAAGGAAG
* *
7325934 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGGA -GA GGA TGA TGA AGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA T-GA TGA TGA TGA TGA TGA
* * * * *
7325979 TGA TGGA -GA GGA TGA TGA AGA TGA TGA CGA TGA CGA CGA TGA TGA
1 TGA T-GA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
7326024 GCAGAACCAG
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
2 4 0.05
3 65 0.89
4 4 0.05
ACGTcount: A:0.36, C:0.03, G:0.38, T:0.23
Consensus pattern (3 bp):
TGA
Found at i:7325960 original size:21 final size:21
Alignment explanation
Indices: 7325947--7326004 Score: 98
Period size: 21 Copynumber: 2.8 Consensus size: 21
7325937 TGATGATGAT
7325947 GATGATGATGATGATGGAGAG
1 GATGATGATGATGATGGAGAG
*
7325968 GATGATGAAGATGATGGAGAG
1 GATGATGATGATGATGGAGAG
*
7325989 GATGATGAAGATGATG
1 GATGATGATGATGATG
7326005 ACGATGACGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.36, C:0.00, G:0.41, T:0.22
Consensus pattern (21 bp):
GATGATGATGATGATGGAGAG
Found at i:7327385 original size:66 final size:66
Alignment explanation
Indices: 7327310--7327446 Score: 249
Period size: 66 Copynumber: 2.1 Consensus size: 66
7327300 TGCTTGATAA
7327310 ATATTATCAAATTATGTTTTTAT-TACACATACTATTAACATTTATTTTCAATATAAATTAGAAT
1 ATATTATCAAATTATGTTTTT-TCTACACATACTATTAACATTTATTTTCAATATAAATTAGAAT
7327374 AC
65 AC
*
7327376 ATATTATCAAATTATGTTTTTTCTACACATACTATTAACATTTATTTTCAATATAAATTATAATA
1 ATATTATCAAATTATGTTTTTTCTACACATACTATTAACATTTATTTTCAATATAAATTAGAATA
7327441 C
66 C
7327442 ATATT
1 ATATT
7327447 TTTATTCAAT
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
65 1 0.01
66 68 0.99
ACGTcount: A:0.40, C:0.11, G:0.02, T:0.47
Consensus pattern (66 bp):
ATATTATCAAATTATGTTTTTTCTACACATACTATTAACATTTATTTTCAATATAAATTAGAATA
C
Found at i:7337801 original size:3 final size:3
Alignment explanation
Indices: 7337793--7337857 Score: 130
Period size: 3 Copynumber: 21.7 Consensus size: 3
7337783 ACTTGTGTTT
7337793 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7337841 ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA AT
7337858 GAAAATTATA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:7341201 original size:80 final size:80
Alignment explanation
Indices: 7341108--7341259 Score: 268
Period size: 80 Copynumber: 1.9 Consensus size: 80
7341098 GGTGTAATTT
* * * *
7341108 GGTTTTGGGTTAAGTTTTGAGTAAGGAGTTTTAGGAGACTTTTCTTATTTTAAAAGTCTCACAAT
1 GGTTTTGGGTTAAGTTTTGAGTAAAGAATTTTAGGAGACTTTTCTCATTCTAAAAGTCTCACAAT
7341173 TGTAAAGTTACACTG
66 TGTAAAGTTACACTG
7341188 GGTTTTGGGTTAAGTTTTGAGTAAAGAATTTTAGGAGACTTTTCTCATTCTAAAAGTCTCACAAT
1 GGTTTTGGGTTAAGTTTTGAGTAAAGAATTTTAGGAGACTTTTCTCATTCTAAAAGTCTCACAAT
7341253 TGTAAAG
66 TGTAAAG
7341260 ATTTATTTGT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 68 1.00
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (80 bp):
GGTTTTGGGTTAAGTTTTGAGTAAAGAATTTTAGGAGACTTTTCTCATTCTAAAAGTCTCACAAT
TGTAAAGTTACACTG
Found at i:7345429 original size:106 final size:106
Alignment explanation
Indices: 7345241--7345454 Score: 302
Period size: 106 Copynumber: 2.0 Consensus size: 106
7345231 TATCAGTTAG
* * * *
7345241 AAGTTTTGGCTATCATATAGTCAAAAAAATGGAAAGGTCAGTTTGTTGTTGCTGCTTCCAGGGAA
1 AAGTTTTGGCTATCATATAGCCAAAAAAATGAAAACGTCAGTTTGTTGTTGCTGCTTCCAGGAAA
* *
7345306 GTTAGGGTGCAAAGAGCACCGTACAAAACTACAAAACTTGA
66 GTTAGGGTGCAAAGAGCAACGCACAAAACTACAAAACTTGA
* * ** *
7345347 AAGTTTTGGCTATCATGTAGCCAAAGAAATGAAAACGTTGGTTTGTTGTTGCTGCTTCTAGGAAA
1 AAGTTTTGGCTATCATATAGCCAAAAAAATGAAAACGTCAGTTTGTTGTTGCTGCTTCCAGGAAA
* * *
7345412 GTTAGGGTGCAATGAGCAATGCACAAAACTTCAAAACTTGA
66 GTTAGGGTGCAAAGAGCAACGCACAAAACTACAAAACTTGA
7345453 AA
1 AA
7345455 TGTGACTTAC
Statistics
Matches: 94, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
106 94 1.00
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (106 bp):
AAGTTTTGGCTATCATATAGCCAAAAAAATGAAAACGTCAGTTTGTTGTTGCTGCTTCCAGGAAA
GTTAGGGTGCAAAGAGCAACGCACAAAACTACAAAACTTGA
Found at i:7347667 original size:20 final size:21
Alignment explanation
Indices: 7347642--7347702 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 21
7347632 AGACAAAAAT
*
7347642 TATCATGTAAATAATGTAA-A
1 TATCATGTAAATAATATAATA
*
7347662 TATCAT-TTAATAATATAATA
1 TATCATGTAAATAATATAATA
* *
7347682 TATCATG-CAATAATATGATA
1 TATCATGTAAATAATATAATA
7347702 T
1 T
7347703 CATGCAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
19 10 0.29
20 25 0.71
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.39
Consensus pattern (21 bp):
TATCATGTAAATAATATAATA
Found at i:7347815 original size:14 final size:15
Alignment explanation
Indices: 7347796--7347836 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
7347786 CCCAAAAAAA
7347796 AAAAATAAAACAA-G
1 AAAAATAAAACAATG
*
7347810 AAAAATGAAACAATG
1 AAAAATAAAACAATG
*
7347825 AAAGA-AAAACAA
1 AAAAATAAAACAA
7347837 AAGAATTACA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
14 18 0.78
15 5 0.22
ACGTcount: A:0.76, C:0.07, G:0.10, T:0.07
Consensus pattern (15 bp):
AAAAATAAAACAATG
Found at i:7349053 original size:6 final size:6
Alignment explanation
Indices: 7349042--7349125 Score: 81
Period size: 6 Copynumber: 14.7 Consensus size: 6
7349032 AAATAAATCA
7349042 TAAAAT TAAAAT TAAAA- TAAAA- -AAAAT CT-AAAT CT-AAAT TAAAAT
1 TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT -TAAAAT -TAAAAT TAAAAT
* * *
7349087 CAAAAT TAAAAT TAAAAT TAAAA- TCAAAT TACAAT TAAA
1 TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAA
7349126 GATTTTAGGC
Statistics
Matches: 67, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
4 4 0.06
5 10 0.15
6 53 0.79
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (6 bp):
TAAAAT
Found at i:7349652 original size:18 final size:18
Alignment explanation
Indices: 7349629--7349680 Score: 61
Period size: 17 Copynumber: 2.9 Consensus size: 18
7349619 GATTCATAAA
*
7349629 AAAATTCGTAATGATTTC
1 AAAATTCGTAAAGATTTC
* *
7349647 AAAATTTGCAAAGA-TTC
1 AAAATTCGTAAAGATTTC
*
7349664 AATATTCGTAAAGATTT
1 AAAATTCGTAAAGATTT
7349681 TTAGATTAGC
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
17 14 0.52
18 13 0.48
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.37
Consensus pattern (18 bp):
AAAATTCGTAAAGATTTC
Found at i:7349846 original size:18 final size:18
Alignment explanation
Indices: 7349820--7349890 Score: 71
Period size: 16 Copynumber: 4.2 Consensus size: 18
7349810 TTCATTGAAG
7349820 TTTTAAGATTCGCAAGAA
1 TTTTAAGATTCGCAAGAA
*
7349838 TTTTTAGATTCGCAAGAA
1 TTTTAAGATTCGCAAGAA
7349856 ---TACAGATTCGCAAGAA
1 TTTTA-AGATTCGCAAGAA
* *
7349872 -TTCAA-ATTAGCAAGAA
1 TTTTAAGATTCGCAAGAA
7349888 TTT
1 TTT
7349891 CGGTGTGCAA
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
15 1 0.02
16 23 0.51
17 3 0.07
18 18 0.40
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.32
Consensus pattern (18 bp):
TTTTAAGATTCGCAAGAA
Found at i:7350052 original size:104 final size:102
Alignment explanation
Indices: 7349924--7350153 Score: 252
Period size: 104 Copynumber: 2.2 Consensus size: 102
7349914 GTAAGAACTC
* ** * *
7349924 AGACTTTTAGATTTACAAGAATTC--AAATTTGTAAAAATTTTCAGATTCGC-AAGAATTGCAAT
1 AGACTTTTAGATTTGCAAGAATTCAAAAATTCAT-AAAAGTTTCAGATTC-CTAAGAA-TGAAAT
* * *
7349986 ATTCTCAGCTTTTTCAAATT-TTCAAGAGCTCAAAGTTTCGTA
63 ATTC-AAAC-TTTTCAAATTCTT-AAGAACTCAAAGTTTCGTA
* *
7350028 AGACTTTTAGATTTGCAAGAATTCAAAAATTCATAAGAGTTTCAGATTCCTAAGGATGAAATATT
1 AGACTTTTAGATTTGCAAGAATTCAAAAATTCATAAAAGTTTCAGATTCCTAAGAATGAAATATT
* *
7350093 CAAACTTTTCATATTCTTAAGAACTCAAAGTTTTGTA
66 CAAACTTTTCAAATTCTTAAGAACTCAAAGTTTCGTA
*
7350130 AGAATTTTTAGATTTGCAAGAATT
1 AG-ACTTTTAGATTTGCAAGAATT
7350154 TGAACTTTGT
Statistics
Matches: 108, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
102 28 0.26
103 24 0.22
104 33 0.31
105 17 0.16
106 6 0.06
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (102 bp):
AGACTTTTAGATTTGCAAGAATTCAAAAATTCATAAAAGTTTCAGATTCCTAAGAATGAAATATT
CAAACTTTTCAAATTCTTAAGAACTCAAAGTTTCGTA
Found at i:7350054 original size:35 final size:35
Alignment explanation
Indices: 7349924--7350054 Score: 103
Period size: 35 Copynumber: 3.8 Consensus size: 35
7349914 GTAAGAACTC
*
7349924 AGACTTTT-AGATTTACAAGAATTCAAATTT-GTA
1 AGACTTTTCAGATTTGCAAGAATTCAAATTTCGTA
* * * *
7349957 AAAATTTTCAGATTCGCAAGAATTGC-AATATTC-TC
1 AGACTTTTCAGATTTGCAAGAATT-CAAAT-TTCGTA
* * **
7349992 AG-CTTTTTCAAATTTTCAAGAGCTCAAAGTTTCGTA
1 AGAC-TTTTCAGATTTGCAAGAATTCAAA-TTTCGTA
7350028 AGACTTTT-AGATTTGCAAGAATTCAAA
1 AGACTTTTCAGATTTGCAAGAATTCAAA
7350055 AATTCATAAG
Statistics
Matches: 72, Mismatches: 17, Indels: 16
0.69 0.16 0.15
Matches are distributed among these distances:
33 6 0.08
34 17 0.24
35 40 0.56
36 8 0.11
37 1 0.01
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.37
Consensus pattern (35 bp):
AGACTTTTCAGATTTGCAAGAATTCAAATTTCGTA
Found at i:7350495 original size:23 final size:23
Alignment explanation
Indices: 7350378--7350515 Score: 77
Period size: 24 Copynumber: 5.9 Consensus size: 23
7350368 GAAATTCACA
*
7350378 TAAAATTTTTCAAAAATTCACATTC
1 TAAAA-TTTT-AAATATTCACATTC
* * *
7350403 AAAAACTTT-AATATTTCACA-AC
1 TAAAATTTTAAATA-TTCACATTC
* * * *
7350425 CAAAATTTCAAAGATTCTCATTC
1 TAAAATTTTAAATATTCACATTC
* * * *
7350448 AAAAAATTTCAAGGT-TTCCCA-TC
1 -TAAAATTTTAA-ATATTCACATTC
7350471 TAAAATTTTAAATATTCACATTC
1 TAAAATTTTAAATATTCACATTC
*
7350494 TAAAAATTTTAGATATTCACAT
1 T-AAAATTTTAAATATTCACAT
7350516 CCAAAGTTTC
Statistics
Matches: 86, Mismatches: 19, Indels: 17
0.70 0.16 0.14
Matches are distributed among these distances:
21 1 0.01
22 29 0.34
23 15 0.17
24 37 0.43
25 4 0.05
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.37
Consensus pattern (23 bp):
TAAAATTTTAAATATTCACATTC
Found at i:7350520 original size:92 final size:90
Alignment explanation
Indices: 7350430--7350637 Score: 220
Period size: 92 Copynumber: 2.3 Consensus size: 90
7350420 ACAACCAAAA
* * *
7350430 TTTCAAAGATTCTCATTCAAAAAATTTCAAGGTTTCCCATCTAAAATTTTAAATATTCACATTCT
1 TTTCAAAGATTCTCATTCAAAAAATTT-AAGGCTTCACATCTAAAATTTTAAAAATTCACATTC-
*
7350495 AAAAATTTTAGATATTCACATCCAAAG
64 AAAAATTTTAGATATTCACATCCAAAA
* ** * * * * *
7350522 TTTCAAAGGTTCTTTTTCAAAAACTTTATGGCTTCACATCTAAAATGTTAAAGATTCTCATTCGA
1 TTTCAAAGATTCTCATTCAAAAAATTTAAGGCTTCACATCTAAAATTTTAAAAATTCACATTC--
* *
7350587 AAAAATTTTAGGGT-TTCGCATCCAAAAA
64 AAAAATTTTA-GATATTCACATCC-AAAA
*
7350615 TTTCAAAGATTCTCATTCGAAAA
1 TTTCAAAGATTCTCATTCAAAAA
7350638 GCTCTTTTAA
Statistics
Matches: 95, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
91 30 0.32
92 41 0.43
93 24 0.25
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.37
Consensus pattern (90 bp):
TTTCAAAGATTCTCATTCAAAAAATTTAAGGCTTCACATCTAAAATTTTAAAAATTCACATTCAA
AAATTTTAGATATTCACATCCAAAA
Found at i:7350637 original size:23 final size:23
Alignment explanation
Indices: 7350426--7350637 Score: 83
Period size: 22 Copynumber: 9.2 Consensus size: 23
7350416 TTTCACAACC
7350426 AAAATTTCAAAGATTCTCATTCAA
1 AAAATTTCAAAGATTCTCATTC-A
* * * *
7350450 AAAATTTCAAGGTTTCCCA-TCT
1 AAAATTTCAAAGATTCTCATTCA
* * *
7350472 AAAATTTTAAATATTCACATTCTA
1 AAAATTTCAAAGATTCTCATTC-A
* * * * *
7350496 AAAATTTTAGATATTCACA-TCC
1 AAAATTTCAAAGATTCTCATTCA
* * **
7350518 AAAGTTTCAAAGGTTCTTTTTCA
1 AAAATTTCAAAGATTCTCATTCA
** * * *
7350541 AAAACTTT-ATGGCTTCACA-TCT
1 AAAA-TTTCAAAGATTCTCATTCA
7350563 AAAATGTT-AAAGATTCTCATTCGAA
1 AAAAT-TTCAAAGATTCTCATTC--A
* ** * * *
7350588 AAAATTTTAGGGTTTCGCATCCA
1 AAAATTTCAAAGATTCTCATTCA
*
7350611 AAAATTTCAAAGATTCTCATTCG
1 AAAATTTCAAAGATTCTCATTCA
7350634 AAAA
1 AAAA
7350638 GCTCTTTTAA
Statistics
Matches: 133, Mismatches: 46, Indels: 19
0.67 0.23 0.10
Matches are distributed among these distances:
21 1 0.01
22 40 0.30
23 39 0.29
24 39 0.29
25 14 0.11
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (23 bp):
AAAATTTCAAAGATTCTCATTCA
Found at i:7355170 original size:19 final size:16
Alignment explanation
Indices: 7355132--7355174 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
7355122 GTATACACAT
*
7355132 AATATATACAAAGAAC
1 AATAAATACAAAGAAC
7355148 AATAAATACAAAGAAC
1 AATAAATACAAAGAAC
7355164 AA-AAATA-AAAG
1 AATAAATACAAAG
7355175 GTGAGTATGC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
14 4 0.15
15 5 0.19
16 17 0.65
ACGTcount: A:0.70, C:0.09, G:0.07, T:0.14
Consensus pattern (16 bp):
AATAAATACAAAGAAC
Found at i:7360943 original size:21 final size:21
Alignment explanation
Indices: 7360898--7360940 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
7360888 ACATGAAATT
7360898 AATATAGTAAAAATATATTAA
1 AATATAGTAAAAATATATTAA
7360919 AATAT-GTAAAAAT-TCATTAA
1 AATATAGTAAAAATAT-ATTAA
7360939 AA
1 AA
7360941 ATAATATAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 1 0.05
20 15 0.71
21 5 0.24
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (21 bp):
AATATAGTAAAAATATATTAA
Found at i:7363283 original size:11 final size:11
Alignment explanation
Indices: 7363245--7363303 Score: 52
Period size: 12 Copynumber: 5.5 Consensus size: 11
7363235 TATTTTATAT
*
7363245 TTATTTATGTGG
1 TTATTTAT-TTG
* *
7363257 TTTTTTATGTG
1 TTATTTATTTG
7363268 TTTATTTATTTG
1 -TTATTTATTTG
7363280 TTA--T-TTTG
1 TTATTTATTTG
7363288 TTATTTATTTG
1 TTATTTATTTG
7363299 TTATT
1 TTATT
7363304 ATTCATTTGT
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
8 7 0.18
9 1 0.03
10 1 0.03
11 13 0.34
12 16 0.42
ACGTcount: A:0.15, C:0.00, G:0.14, T:0.71
Consensus pattern (11 bp):
TTATTTATTTG
Found at i:7363676 original size:8 final size:8
Alignment explanation
Indices: 7363663--7363692 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
7363653 AACTGGATTT
*
7363663 TTTTTTTG
1 TTTTTTTA
7363671 TTTTTTTA
1 TTTTTTTA
7363679 TTTTTTTA
1 TTTTTTTA
7363687 TTTTTT
1 TTTTTT
7363693 AAATTTGATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.07, C:0.00, G:0.03, T:0.90
Consensus pattern (8 bp):
TTTTTTTA
Found at i:7363840 original size:95 final size:94
Alignment explanation
Indices: 7363679--7363881 Score: 318
Period size: 95 Copynumber: 2.2 Consensus size: 94
7363669 TGTTTTTTTA
*
7363679 TTTTTT-TATTTTTTAAATTTGATCAAAGCTCCTCTAAGCAGAGGCTCAATAACTTTGAGAAACA
1 TTTTTTGTATTTTTTAAATTTGATCAAAGCTCCTCTAAGCAGAGGCTCAACAACTTTGAGAAACA
7363743 TAAACAAAGCTCCTCTAAACAGAGATAATT
66 TAAACAAAGCTCCTCTAAACAGAGATAA-T
* *
7363773 TTTTTTGTATTTTTTAAATTTGATCAAAGCTTCTCTAAGCAGAGGCTCAACGACTTTGAGAAACA
1 TTTTTTGTATTTTTTAAATTTGATCAAAGCTCCTCTAAGCAGAGGCTCAACAACTTTGAGAAACA
* * * *
7363838 TAAAGAAAGCTCTTCTAAATAGAGGTAAT
66 TAAACAAAGCTCCTCTAAACAGAGATAAT
*
7363867 TTTTTTGTTTTTTTT
1 TTTTTTGTATTTTTT
7363882 GTTTTTTTTT
Statistics
Matches: 100, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
94 21 0.21
95 79 0.79
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.39
Consensus pattern (94 bp):
TTTTTTGTATTTTTTAAATTTGATCAAAGCTCCTCTAAGCAGAGGCTCAACAACTTTGAGAAACA
TAAACAAAGCTCCTCTAAACAGAGATAAT
Found at i:7363881 original size:10 final size:9
Alignment explanation
Indices: 7363866--7363894 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
7363856 ATAGAGGTAA
7363866 TTTTTTTGT
1 TTTTTTTGT
7363875 TTTTTTTGT
1 TTTTTTTGT
7363884 TTTTTTT-T
1 TTTTTTTGT
7363892 TTT
1 TTT
7363895 AAATTTTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 4 0.20
9 16 0.80
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (9 bp):
TTTTTTTGT
Found at i:7364007 original size:42 final size:42
Alignment explanation
Indices: 7363912--7364118 Score: 204
Period size: 42 Copynumber: 4.9 Consensus size: 42
7363902 GATCAAGCAC
* * ** *
7363912 CTCTAAGCAGA-GCTCAACGACTTTGAGAAACATAAACAAAGCTC
1 CTCTAATCAGAGGCTCAACGACTTTGA-AAAAAT-AA-ATTGCTT
* *
7363956 CTCTAATCAGAGGCTCAACGATTTTTG-AAAAATAAATGGCTT
1 CTCTAATCAGAGGCTCAACGA-CTTTGAAAAAATAAATTGCTT
* * *
7363998 CTCTAATCAGAGGCTCGACAACTTTGAAAAAATAAATTAC-T
1 CTCTAATCAGAGGCTCAACGACTTTGAAAAAATAAATTGCTT
* *** * *
7364039 CTTCTAAACAGAGGCTCGGTGACTTTAAAAAAATAAATTGCTC
1 C-TCTAATCAGAGGCTCAACGACTTTGAAAAAATAAATTGCTT
7364082 CTCTAATCAGAGGCTCAACGACTTTGAAAAAATAAAT
1 CTCTAATCAGAGGCTCAACGACTTTGAAAAAATAAAT
7364119 CGTTGAAAGC
Statistics
Matches: 135, Mismatches: 23, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
41 6 0.04
42 98 0.73
43 3 0.02
44 15 0.11
45 9 0.07
46 4 0.03
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.26
Consensus pattern (42 bp):
CTCTAATCAGAGGCTCAACGACTTTGAAAAAATAAATTGCTT
Found at i:7364700 original size:36 final size:38
Alignment explanation
Indices: 7364640--7364716 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 38
7364630 TAAAAGAAAA
* *
7364640 ATTTTAGAGATTCATATCCAAAAAGTT-AAAGCTTTGT
1 ATTTTAGAGATTCACATCCAAAAAGTTCAAAACTTTGT
* *
7364677 ATTTTGGAGATTCACATCC-AAAAGTTCAAAACTTTTT
1 ATTTTAGAGATTCACATCCAAAAAGTTCAAAACTTTGT
7364714 ATT
1 ATT
7364717 CTAATTCGAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
36 7 0.20
37 28 0.80
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39
Consensus pattern (38 bp):
ATTTTAGAGATTCACATCCAAAAAGTTCAAAACTTTGT
Found at i:7365939 original size:8 final size:8
Alignment explanation
Indices: 7365913--7365970 Score: 55
Period size: 8 Copynumber: 6.6 Consensus size: 8
7365903 TTTGAATTTT
7365913 TTTTTTCA
1 TTTTTTCA
7365921 TTTTCTT-A
1 TTTT-TTCA
7365929 TTTTTTCA
1 TTTTTTCA
7365937 TTTTTCATCA
1 TTTTT--TCA
7365947 TCTTCTTTTCA
1 --TT-TTTTCA
7365958 TTTTTTCA
1 TTTTTTCA
7365966 TTTTT
1 TTTTT
7365971 CATCCATTGT
Statistics
Matches: 43, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
7 2 0.05
8 26 0.60
9 4 0.09
10 3 0.07
11 3 0.07
12 2 0.05
13 3 0.07
ACGTcount: A:0.12, C:0.16, G:0.00, T:0.72
Consensus pattern (8 bp):
TTTTTTCA
Found at i:7365944 original size:23 final size:22
Alignment explanation
Indices: 7365913--7365969 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 22
7365903 TTTGAATTTT
*
7365913 TTTTTTCATTTTCTTATTTTTTCA
1 TTTTTTCATTTTC-T-TCTTTTCA
**
7365937 -TTTTTCATCATCTTCTTTTCA
1 TTTTTTCATTTTCTTCTTTTCA
7365958 TTTTTTCATTTT
1 TTTTTTCATTTT
7365970 TCATCCATTG
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
21 7 0.26
22 10 0.37
23 10 0.37
ACGTcount: A:0.12, C:0.16, G:0.00, T:0.72
Consensus pattern (22 bp):
TTTTTTCATTTTCTTCTTTTCA
Found at i:7370627 original size:118 final size:118
Alignment explanation
Indices: 7370398--7370682 Score: 352
Period size: 118 Copynumber: 2.4 Consensus size: 118
7370388 TTGTACAGAA
* *
7370398 AAAATTGATACTTTCAACTTCTCCC-CAAAATA--TTTTTTAAAAACTTTAATTTCGAGCAAAAT
1 AAAATTGATACTTTCAACTT-TCCCTAAAAATATTTTTTTTAAAAACTTTAATTTCAAGCAAAAT
*
7370460 TGATACTTTCAACTTTTCCTCAAAAAAAAAACCTTTTTGAAAATTTATTTTTAAGG
65 TGATACTTTCAACTTTTCCTC--AAAAAAAACCTTTTTGAAAATTTATTTTCAAGG
* * * *
7370516 ATAATTGATACTTTCAACATTTCCCTAAAAATATTTTTTTTAGAAAGC-TTATTTTCAAGGAAAA
1 AAAATTGATACTTTCAAC-TTTCCCTAAAAATATTTTTTTTA-AAAACTTTAATTTCAAGCAAAA
* *
7370580 TTGATACTTTCAACTTTTCCTC-AAAAATA-TTTTTTAGAAAATTTATTTTCAAGG
64 TTGATACTTTCAACTTTTCCTCAAAAAAAACCTTTTT-GAAAATTTATTTTCAAGG
* *
7370634 AAAATTGATACTTTCAATTTTTCCTCAAAAATA-TTTTTTTAAAAA-TTTA
1 AAAATTGATACTTTCAACTTTCCCT-AAAAATATTTTTTTTAAAAACTTTA
7370683 TTCTTAAAAA
Statistics
Matches: 146, Mismatches: 13, Indels: 18
0.82 0.07 0.10
Matches are distributed among these distances:
116 6 0.04
117 19 0.13
118 67 0.46
119 8 0.05
121 42 0.29
122 4 0.03
ACGTcount: A:0.38, C:0.14, G:0.06, T:0.42
Consensus pattern (118 bp):
AAAATTGATACTTTCAACTTTCCCTAAAAATATTTTTTTTAAAAACTTTAATTTCAAGCAAAATT
GATACTTTCAACTTTTCCTCAAAAAAAACCTTTTTGAAAATTTATTTTCAAGG
Found at i:7370641 original size:58 final size:59
Alignment explanation
Indices: 7370398--7370684 Score: 345
Period size: 58 Copynumber: 4.9 Consensus size: 59
7370388 TTGTACAGAA
* * * * *
7370398 AAAATTGATACTTTCAACTTCTCC-CCAAAATA-TTTTTTA-AAAACTTTAATTTCGAGC
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTAGAAAA-TTTATTTTCAAGG
* ** *
7370455 AAAATTGATACTTTCAACTTTTCCTCAAAAAAAAAACCTTTTT-GAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTC---AAAAATATTTTTTTAGAAAATTTATTTTCAAGG
* * **
7370516 ATAATTGATACTTTCAACATTTCC-CTAAAAATATTTTTTTTAGAAAGCTTATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCTC-AAAAATA-TTTTTTTAGAAAATTTATTTTCAAGG
7370576 AAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTAGAAAATTTATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTAGAAAATTTATTTTCAAGG
*
7370634 AAAATTGATACTTTCAATTTTTCCTCAAAAATATTTTTTTA-AAAATTTATT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTAGAAAATTTATT
7370685 CTTAAAAATT
Statistics
Matches: 198, Mismatches: 22, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
57 23 0.12
58 72 0.36
59 12 0.06
60 45 0.23
61 37 0.19
62 9 0.05
ACGTcount: A:0.38, C:0.14, G:0.06, T:0.43
Consensus pattern (59 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTAGAAAATTTATTTTCAAGG
Found at i:7370679 original size:14 final size:13
Alignment explanation
Indices: 7370660--7370702 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 13
7370650 ATTTTTCCTC
7370660 AAAAATATTTTTTT
1 AAAAAT-TTTTTTT
*
7370674 AAAAATTTATTCTT
1 AAAAATTT-TTTTT
7370688 AAAAATTTTATTTT
1 AAAAATTTT-TTTT
7370702 A
1 A
7370703 TATTTTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
13 3 0.12
14 22 0.88
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (13 bp):
AAAAATTTTTTTT
Found at i:7372207 original size:21 final size:21
Alignment explanation
Indices: 7372183--7372229 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
7372173 TTGTGGATTC
7372183 GGTTGGATTGAATGCGAAATT
1 GGTTGGATTGAATGCGAAATT
* * *
7372204 GGTTGGGTTGAATGTGGAATT
1 GGTTGGATTGAATGCGAAATT
7372225 GGTTG
1 GGTTG
7372230 TGGTTTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.21, C:0.02, G:0.40, T:0.36
Consensus pattern (21 bp):
GGTTGGATTGAATGCGAAATT
Found at i:7375007 original size:22 final size:23
Alignment explanation
Indices: 7374981--7375036 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
7374971 GTTTTTTCTT
7374981 TATTTTTTTATTCTTTCGATTAA
1 TATTTTTTTATTCTTTCGATTAA
* * * *
7375004 -ATTTTATAATTTTTTCTATTAA
1 TATTTTTTTATTCTTTCGATTAA
7375026 TATTTTTTTAT
1 TATTTTTTTAT
7375037 CTTATAAGAA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
22 18 0.69
23 8 0.31
ACGTcount: A:0.25, C:0.05, G:0.02, T:0.68
Consensus pattern (23 bp):
TATTTTTTTATTCTTTCGATTAA
Found at i:7385984 original size:18 final size:18
Alignment explanation
Indices: 7385961--7386019 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
7385951 AAACTTAACA
7385961 TTAATTTTGATATTACTC
1 TTAATTTTGATATTACTC
* *
7385979 TTAA--TT-AAATTTCTC
1 TTAATTTTGATATTACTC
*
7385994 ATTAATTTTGATGTTACTC
1 -TTAATTTTGATATTACTC
7386013 TTAATTT
1 TTAATTT
7386020 AATTATTCTA
Statistics
Matches: 32, Mismatches: 5, Indels: 8
0.71 0.11 0.18
Matches are distributed among these distances:
15 7 0.22
16 6 0.19
18 13 0.41
19 6 0.19
ACGTcount: A:0.29, C:0.10, G:0.05, T:0.56
Consensus pattern (18 bp):
TTAATTTTGATATTACTC
Found at i:7385997 original size:34 final size:34
Alignment explanation
Indices: 7385959--7386023 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
7385949 CTAAACTTAA
7385959 CATTAATTTTGATATTACTCTTAATTAAATTTCT
1 CATTAATTTTGATATTACTCTTAATTAAATTTCT
* *
7385993 CATTAATTTTGATGTTACTCTTAATTTAATT
1 CATTAATTTTGATATTACTCTTAATTAAATT
7386024 ATTCTACTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.31, C:0.11, G:0.05, T:0.54
Consensus pattern (34 bp):
CATTAATTTTGATATTACTCTTAATTAAATTTCT
Found at i:7386724 original size:2 final size:2
Alignment explanation
Indices: 7386717--7386741 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7386707 AGTAATTATG
7386717 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7386742 CTTTCAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7387773 original size:21 final size:21
Alignment explanation
Indices: 7387747--7387788 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
7387737 CCTTTCCCAT
7387747 GGACAACCACTCCATGGACTC
1 GGACAACCACTCCATGGACTC
*
7387768 GGACAACCACTCCATGTACTC
1 GGACAACCACTCCATGGACTC
7387789 TTCTAATCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.38, G:0.17, T:0.17
Consensus pattern (21 bp):
GGACAACCACTCCATGGACTC
Found at i:7393480 original size:18 final size:17
Alignment explanation
Indices: 7393459--7393506 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
7393449 TGATATGATA
7393459 AAAAATATATACAAAATC
1 AAAAATATATA-AAAATC
*
7393477 AAAAATATGTAAAAATC
1 AAAAATATATAAAAATC
7393494 AAAAA-A-ATAAAAA
1 AAAAATATATAAAAA
7393507 AAGATAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 6 0.21
16 1 0.04
17 11 0.39
18 10 0.36
ACGTcount: A:0.73, C:0.06, G:0.02, T:0.19
Consensus pattern (17 bp):
AAAAATATATAAAAATC
Found at i:7393682 original size:2 final size:2
Alignment explanation
Indices: 7393658--7393706 Score: 55
Period size: 2 Copynumber: 25.0 Consensus size: 2
7393648 ATTGATTATC
* * *
7393658 AT AT AC AT AT AC AT AT TT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
7393699 AT GT AT AT
1 AT AT AT AT
7393707 TGAGTCAATA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (2 bp):
AT
Found at i:7394790 original size:20 final size:19
Alignment explanation
Indices: 7394765--7394816 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 19
7394755 TATTTTTATA
7394765 TTTGAAAATTTCTAAAATAT
1 TTTGAAAATTT-TAAAATAT
* *
7394785 TTTGAACACTTTTGAAATAT
1 TTTGAA-AATTTTAAAATAT
7394805 TTT-AGAAATTTT
1 TTTGA-AAATTTT
7394817 TTTATATGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
19 6 0.22
20 17 0.63
21 4 0.15
ACGTcount: A:0.38, C:0.06, G:0.08, T:0.48
Consensus pattern (19 bp):
TTTGAAAATTTTAAAATAT
Found at i:7395373 original size:21 final size:19
Alignment explanation
Indices: 7395336--7395393 Score: 64
Period size: 18 Copynumber: 2.9 Consensus size: 19
7395326 GCCATATCTT
7395336 TTTTTTTTCTTCACTTTCTCTC
1 TTTTTTTTC-TC-CTTTCTC-C
7395358 TTTTTCTTTCTCCTTTC-CC
1 TTTTT-TTTCTCCTTTCTCC
*
7395377 TTTTTTTTCTTCTTTCT
1 TTTTTTTTCTCCTTTCT
7395394 TCTACTGATG
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
18 10 0.30
19 6 0.18
20 1 0.03
21 5 0.15
22 7 0.21
23 4 0.12
ACGTcount: A:0.02, C:0.28, G:0.00, T:0.71
Consensus pattern (19 bp):
TTTTTTTTCTCCTTTCTCC
Found at i:7395977 original size:23 final size:23
Alignment explanation
Indices: 7395951--7395995 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
7395941 ATTAAAAAAT
7395951 ATATGATATAGATATACCTAATA
1 ATATGATATAGATATACCTAATA
* *
7395974 ATATGATATAGGTATACTTAAT
1 ATATGATATAGATATACCTAAT
7395996 GCAAGAAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.44, C:0.07, G:0.11, T:0.38
Consensus pattern (23 bp):
ATATGATATAGATATACCTAATA
Found at i:7397237 original size:57 final size:57
Alignment explanation
Indices: 7397055--7397238 Score: 163
Period size: 57 Copynumber: 3.2 Consensus size: 57
7397045 AAAATTTGAG
* * * * *** * *
7397055 TATCACCATTGAGAAAATGTAAATAAGTTTGGATATTGCCACCGAAGGAAACTCAAA
1 TATCACCATCGAGAAAATGCAAATGACTTCAAATATTGCCACTGAAGAAAACTCAAA
* * ** *
7397112 TATTACAATAAAAAAAATGCAAATGACTTCAAATATTGCCACTGAAGAAAACTCAAA
1 TATCACCATCGAGAAAATGCAAATGACTTCAAATATTGCCACTGAAGAAAACTCAAA
* * * * * * *
7397169 TATCACTATCGAGAAAATGCAAATGATTTCATATTTTGCCA-TCGAAGAACATTCGAA
1 TATCACCATCGAGAAAATGCAAATGACTTCAAATATTGCCACT-GAAGAAAACTCAAA
7397226 TATCACCATCGAG
1 TATCACCATCGAG
7397239 TGATTTTGGA
Statistics
Matches: 101, Mismatches: 25, Indels: 2
0.79 0.20 0.02
Matches are distributed among these distances:
56 1 0.01
57 100 0.99
ACGTcount: A:0.43, C:0.17, G:0.14, T:0.26
Consensus pattern (57 bp):
TATCACCATCGAGAAAATGCAAATGACTTCAAATATTGCCACTGAAGAAAACTCAAA
Found at i:7397324 original size:42 final size:40
Alignment explanation
Indices: 7397258--7397377 Score: 114
Period size: 42 Copynumber: 2.9 Consensus size: 40
7397248 AAATGTCTTG
* *
7397258 GATATCACCACTAAAAAAAAGAAATTCAAGCTTTTACACTCA
1 GATATCACCAC-CAAAAAATGAAATTC-AGCTTTTACACTCA
* * * *
7397300 GATATTACCACCAAGAAAATGAAATTTTAGCTTTAACACTCG
1 GATATCACCACCAA-AAAATGAAA-TTCAGCTTTTACACTCA
* *
7397342 GATGTCACCACTGAAAAAATGAAATTCAGACTTTTA
1 GATATCACCAC-CAAAAAATGAAATTCAG-CTTTTA
7397378 ATACTCGAAT
Statistics
Matches: 63, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
41 6 0.10
42 53 0.84
43 4 0.06
ACGTcount: A:0.43, C:0.19, G:0.11, T:0.27
Consensus pattern (40 bp):
GATATCACCACCAAAAAATGAAATTCAGCTTTTACACTCA
Found at i:7399406 original size:7 final size:8
Alignment explanation
Indices: 7399371--7399415 Score: 56
Period size: 8 Copynumber: 5.6 Consensus size: 8
7399361 TTATCACATC
7399371 TTTTTTT-
1 TTTTTTTA
* *
7399378 TTTTATCA
1 TTTTTTTA
7399386 TTTTTTTA
1 TTTTTTTA
7399394 GTTTTTTTA
1 -TTTTTTTA
7399403 TTTTTTTA
1 TTTTTTTA
7399411 TTTTT
1 TTTTT
7399416 ACTTTTTGGG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
7 5 0.16
8 19 0.59
9 8 0.25
ACGTcount: A:0.11, C:0.02, G:0.02, T:0.84
Consensus pattern (8 bp):
TTTTTTTA
Found at i:7405061 original size:47 final size:49
Alignment explanation
Indices: 7405006--7405102 Score: 126
Period size: 49 Copynumber: 2.0 Consensus size: 49
7404996 GATTTTTTTT
* *
7405006 AAAAAAAAAATTAATTTATG-A-AATTCTCCAATAGTTTGGTAGAATTCAC
1 AAAAAAAAAA--AATTCATGAAGAATTATCCAATAGTTTGGTAGAATTCAC
* *
7405055 AAAAAAAAAAAATTCATGAAGAATTATCTAATAGTTTGGTAGGATTCA
1 AAAAAAAAAAAATTCATGAAGAATTATCCAATAGTTTGGTAGAATTCA
7405103 TGAATTCATT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
47 7 0.17
48 1 0.02
49 34 0.81
ACGTcount: A:0.48, C:0.08, G:0.12, T:0.31
Consensus pattern (49 bp):
AAAAAAAAAAAATTCATGAAGAATTATCCAATAGTTTGGTAGAATTCAC
Found at i:7405996 original size:13 final size:14
Alignment explanation
Indices: 7405978--7406033 Score: 51
Period size: 17 Copynumber: 3.8 Consensus size: 14
7405968 GTATTATTGT
*
7405978 TAAAAAACAAA-AA
1 TAAAAAAAAAAGAA
7405991 TAAAAAAAAAAGAA
1 TAAAAAAAAAAGAA
*
7406005 TAAACCATAAAAAATAA
1 TAAA--A-AAAAAAGAA
7406022 TAAAAATAAAAA
1 TAAAAA-AAAAA
7406034 TATCGAGCCC
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
13 10 0.28
14 7 0.19
15 6 0.17
16 1 0.03
17 12 0.33
ACGTcount: A:0.80, C:0.05, G:0.02, T:0.12
Consensus pattern (14 bp):
TAAAAAAAAAAGAA
Found at i:7406029 original size:23 final size:21
Alignment explanation
Indices: 7405990--7406031 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 21
7405980 AAAAACAAAA
*
7405990 ATAAAAAAAAAAGAATAAACC
1 ATAAAAAAAAAAAAATAAACC
7406011 ATAAAAAATAATAAAAATAAA
1 ATAAAAAA-AA-AAAAATAAA
7406032 AATATCGAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 8 0.44
22 2 0.11
23 8 0.44
ACGTcount: A:0.79, C:0.05, G:0.02, T:0.14
Consensus pattern (21 bp):
ATAAAAAAAAAAAAATAAACC
Found at i:7406576 original size:66 final size:66
Alignment explanation
Indices: 7406480--7406671 Score: 171
Period size: 66 Copynumber: 2.9 Consensus size: 66
7406470 ATCAAATTGC
* * * ** *
7406480 AAGT-AAAATAAA-AAAATGATTTAGACTGAGCTGAGATTAAAATTGAATGA-CAGGGATTGAAC
1 AAGTCAAAA-AAATAAAATGATCTAGACTGAGCCGAGATCAAAATTGAACAACCA-GGATCGAAC
*
7406542 CGT
64 CAT
* * *
7406545 AAGTCAAAAAAATAAAATGATCTGGATTGAGCCGAGATCAAAATTGAGCAACCAGGATCGAACCA
1 AAGTCAAAAAAATAAAATGATCTAGACTGAGCCGAGATCAAAATTGAACAACCAGGATCGAACCA
7406610 T
66 T
* * ** *
7406611 GAGTCAAAAAAATAAAATGA-CTTAAACCAAGTCGAGATCAAAA-TGAACAACC-GAGATCGAA
1 AAGTCAAAAAAATAAAATGATC-TAGACTGAGCCGAGATCAAAATTGAACAACCAG-GATCGAA
7406672 TTGTGAGTCA
Statistics
Matches: 104, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
64 1 0.01
65 23 0.22
66 78 0.75
67 2 0.02
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (66 bp):
AAGTCAAAAAAATAAAATGATCTAGACTGAGCCGAGATCAAAATTGAACAACCAGGATCGAACCA
T
Found at i:7418083 original size:17 final size:16
Alignment explanation
Indices: 7418057--7418094 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
7418047 GAAATTCTAG
7418057 AAAAATAAAAT-AAATA
1 AAAAATAAAATGAAA-A
7418073 AAAATATAAAATGAAAA
1 AAAA-ATAAAATGAAAA
7418090 AAAAA
1 AAAAA
7418095 CCTACAATCG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
16 5 0.25
17 12 0.60
18 3 0.15
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.16
Consensus pattern (16 bp):
AAAAATAAAATGAAAA
Found at i:7418793 original size:6 final size:6
Alignment explanation
Indices: 7418782--7418836 Score: 56
Period size: 6 Copynumber: 8.2 Consensus size: 6
7418772 AATTTAAAGG
7418782 AAAAAT AAAAAT AAAATGAAT AAAACAT AAAAAT AATAAAAT AAAAAT
1 AAAAAT AAAAAT -AAA--AAT AAAA-AT AAAAAT -A-AAAAT AAAAAT
7418830 AAAAAT A
1 AAAAAT A
7418837 TTGGGTCTAA
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
6 21 0.49
7 11 0.26
8 8 0.19
9 3 0.07
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.18
Consensus pattern (6 bp):
AAAAAT
Found at i:7418825 original size:14 final size:15
Alignment explanation
Indices: 7418785--7418831 Score: 62
Period size: 14 Copynumber: 3.1 Consensus size: 15
7418775 TTAAAGGAAA
7418785 AATAAAAAT-AAAAT
1 AATAAAAATAAAAAT
7418799 GAATAAAACATAAAAAT
1 -AATAAAA-ATAAAAAT
7418816 AAT-AAAATAAAAAT
1 AATAAAAATAAAAAT
7418830 AA
1 AA
7418832 AAATATTGGG
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
14 10 0.33
15 10 0.33
16 5 0.17
17 5 0.17
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (15 bp):
AATAAAAATAAAAAT
Found at i:7420505 original size:11 final size:11
Alignment explanation
Indices: 7420491--7420515 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7420481 TCTCTTTTTT
7420491 TTTATTTTTAA
1 TTTATTTTTAA
7420502 TTTATTTTTAA
1 TTTATTTTTAA
7420513 TTT
1 TTT
7420516 TTTAAATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTATTTTTAA
Found at i:7420977 original size:82 final size:82
Alignment explanation
Indices: 7420880--7421046 Score: 289
Period size: 82 Copynumber: 2.0 Consensus size: 82
7420870 CTTGGTATCA
* * *
7420880 AATTAATCATTTTTATTAATTTTCTTATAAATATAAACAATTCCTCTTTTATTTATTTTACAAAT
1 AATTAATCATTTTTATTAATTTTCATATAAATATAAACAATTCCTCTTTTAATAATTTTACAAAT
7420945 AAAGATTTTCTTTTAAT
66 AAAGATTTTCTTTTAAT
*
7420962 AATTAATCATTTTTATTAATTTTCATATAAATATAAACATTTCCTCTTTTAATAATTTTACAAAT
1 AATTAATCATTTTTATTAATTTTCATATAAATATAAACAATTCCTCTTTTAATAATTTTACAAAT
*
7421027 AAAGATTTTCTTTTAGT
66 AAAGATTTTCTTTTAAT
7421044 AAT
1 AAT
7421047 AAATAATGAT
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
82 80 1.00
ACGTcount: A:0.38, C:0.10, G:0.02, T:0.51
Consensus pattern (82 bp):
AATTAATCATTTTTATTAATTTTCATATAAATATAAACAATTCCTCTTTTAATAATTTTACAAAT
AAAGATTTTCTTTTAAT
Found at i:7422221 original size:9 final size:9
Alignment explanation
Indices: 7422207--7422236 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
7422197 AAAAATATTT
7422207 ATTTTTGAA
1 ATTTTTGAA
7422216 ATTTTTGAA
1 ATTTTTGAA
*
7422225 AATTTTGAA
1 ATTTTTGAA
7422234 ATT
1 ATT
7422237 GAGACTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (9 bp):
ATTTTTGAA
Found at i:7422817 original size:35 final size:36
Alignment explanation
Indices: 7422768--7422839 Score: 110
Period size: 35 Copynumber: 2.0 Consensus size: 36
7422758 TTTAACTTTT
*
7422768 TTTTATATACTTTATTTTTTCAAACCGAAGTTTATAA
1 TTTTATATA-TTTATTTTTTCAAACCAAAGTTTATAA
*
7422805 TTTTATAT-TTTATTTTTTCAAATCAAAGTTTATAA
1 TTTTATATATTTATTTTTTCAAACCAAAGTTTATAA
7422840 GTATTTTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
35 25 0.76
37 8 0.24
ACGTcount: A:0.33, C:0.08, G:0.04, T:0.54
Consensus pattern (36 bp):
TTTTATATATTTATTTTTTCAAACCAAAGTTTATAA
Found at i:7432169 original size:15 final size:15
Alignment explanation
Indices: 7432149--7432192 Score: 72
Period size: 15 Copynumber: 2.9 Consensus size: 15
7432139 GAAAATGACA
7432149 TAGACTATCTTATGG
1 TAGACTATCTTATGG
7432164 TAGACTATCTTATGG
1 TAGACTATCTTATGG
7432179 TAGAAC-ATCTTATG
1 TAG-ACTATCTTATG
7432193 ATAGGCTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
15 26 0.93
16 2 0.07
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.39
Consensus pattern (15 bp):
TAGACTATCTTATGG
Found at i:7441750 original size:23 final size:23
Alignment explanation
Indices: 7441720--7441766 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
7441710 AAGGTATTAG
7441720 AAGCATTTTTGTTTGTTATGCAT
1 AAGCATTTTTGTTTGTTATGCAT
*
7441743 AAGCATTTTTGTTTGTTGTGCAT
1 AAGCATTTTTGTTTGTTATGCAT
7441766 A
1 A
7441767 GAATTCAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.21, C:0.09, G:0.19, T:0.51
Consensus pattern (23 bp):
AAGCATTTTTGTTTGTTATGCAT
Found at i:7447564 original size:17 final size:17
Alignment explanation
Indices: 7447513--7447565 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 17
7447503 TAATTAGGAG
*
7447513 TAAATCATAAGTC-AAA
1 TAAATCATAAGTCGAAT
*
7447529 TAAA--ATGA-TCGAGAT
1 TAAATCATAAGTCGA-AT
7447544 TAAATCATAAGTCGAAT
1 TAAATCATAAGTCGAAT
7447561 TAAAT
1 TAAAT
7447566 GATCGCTAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 9
0.71 0.07 0.22
Matches are distributed among these distances:
13 2 0.07
14 4 0.14
15 5 0.17
16 4 0.14
17 10 0.34
18 4 0.14
ACGTcount: A:0.51, C:0.09, G:0.11, T:0.28
Consensus pattern (17 bp):
TAAATCATAAGTCGAAT
Found at i:7447727 original size:33 final size:32
Alignment explanation
Indices: 7447681--7448420 Score: 166
Period size: 32 Copynumber: 22.5 Consensus size: 32
7447671 TAGGTTTTAG
* *
7447681 ATAATCTAAGCTTAAATTTTCACTGGGTGCT-A
1 ATAAACTAGGCTTAAATTTTCA-TGGGTGCTAA
* * *
7447713 ATCAAACTACGCTTAAATTTGCATTGGTGCTAA
1 AT-AAACTAGGCTTAAATTTTCATGGGTGCTAA
* * *
7447746 ATAATCTGGGTTTAAATTTTCATTGGGTG-TCAA
1 ATAAACTAGGCTTAAATTTTCA-TGGGTGCT-AA
* * * * * *
7447779 TTAAACTTGGCCTAAATTTTTATTGGTGCTAG
1 ATAAACTAGGCTTAAATTTTCATGGGTGCTAA
* * * *
7447811 ATAATCTAGGCTTAAATCTTTCACTGAGTGCCAG
1 ATAAACTAGGCTTAAAT-TTTCA-TGGGTGCTAA
* * *
7447845 CTAAGCT-GGACTTAAATATTTCACTGGGTGGC-AGC
1 ATAAACTAGG-CTTAAAT-TTTCA-TGGGT-GCTA-A
* * * * *
7447880 A-AAACTGGGCTTAAATTTTCGTTGATGCTAG
1 ATAAACTAGGCTTAAATTTTCATGGGTGCTAA
*
7447911 ATAATCT-GAGCTTAAATTTTCATTGGGTG-TCAA
1 ATAAACTAG-GCTTAAATTTTCA-TGGGTGCT-AA
* * * * * *
7447944 TTAAACTTGGTTTAAATTTTTATTGGTGCTAG
1 ATAAACTAGGCTTAAATTTTCATGGGTGCTAA
* * * * *
7447976 ATAATCTATGCTTAAATCTTTCATTGAGTGCCAG
1 ATAAACTAGGCTTAAAT-TTTCA-TGGGTGCTAA
* *
7448010 CTAAACT-GGACTTAAATATTTCACTGGGTGC-CA
1 ATAAACTAGG-CTTAAAT-TTTCA-TGGGTGCTAA
* * * * * * *
7448043 GTAAAATTGGGCTTAAATTTTTATTGATGCTAG
1 AT-AAACTAGGCTTAAATTTTCATGGGTGCTAA
* * ** *
7448076 ATAAATTGGGCTTAAATCTTTCACTAAGTGCTAG
1 ATAAACTAGGCTTAAAT-TTTCA-TGGGTGCTAA
* ** ** ** *
7448110 CTAAGTTGAGG-TTAAAACTTCATTAAGTGCTAG
1 ATAAACT-AGGCTTAAATTTTCA-TGGGTGCTAA
* * * * * * *
7448143 ATAATCTAAGTTTAAATTTT-ATTAGATGCCAG
1 ATAAACTAGGCTTAAATTTTCA-TGGGTGCTAA
* *
7448175 CTAAACT-GAGCTTAAATTTTTCTTATGTGT-C-AA
1 ATAAACTAG-GCTTAAA-TTTTC--ATGGGTGCTAA
** *
7448208 ATAAACTAGGCTTAAATCTTTTCATAAGTGCTAG
1 ATAAACTAGGCTTAAA--TTTTCATGGGTGCTAA
** * * ** *
7448242 ATAAGTTGGGCTTAAATCTTCATTAGTGCCAA
1 ATAAACTAGGCTTAAATTTTCATGGGTGCTAA
* * * *
7448274 CTAAAAT-GGCTTAAATCTTCATTGGTGCTAA
1 ATAAACTAGGCTTAAATTTTCATGGGTGCTAA
* * * **
7448305 CTATACTAGGCTTAAACCTTTTAATGAATG-TCAA
1 ATAAACTAGGCTTAAA--TTTTCATGGGTGCT-AA
**
7448339 ATAAACTAGGCTTAAATCTTT-ATTGGGTG-TCG
1 ATAAACTAGGCTTAAAT-TTTCA-TGGGTGCTAA
* *
7448371 ATAAACTAGGCTTAGATATTTCATTGGGTGCCAA
1 ATAAACTAGGCTTAAAT-TTTCA-TGGGTGCTAA
* *
7448405 GTAAATTAGGCTTAAA
1 ATAAACTAGGCTTAAA
7448421 ACTTTATTAG
Statistics
Matches: 525, Mismatches: 138, Indels: 88
0.70 0.18 0.12
Matches are distributed among these distances:
31 31 0.06
32 174 0.33
33 152 0.29
34 157 0.30
35 10 0.02
36 1 0.00
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37
Consensus pattern (32 bp):
ATAAACTAGGCTTAAATTTTCATGGGTGCTAA
Found at i:7447728 original size:65 final size:65
Alignment explanation
Indices: 7447658--7447841 Score: 201
Period size: 65 Copynumber: 2.8 Consensus size: 65
7447648 GTTAAATTGA
** *
7447658 GCTTAAATTTCATTAGGTTTTAGATAATCTAAGCTTAAATTTTCACTGGGTGCT-AATCAAACTA
1 GCTTAAATTTCATT-GGTGCTAGATAATCTAGGCTTAAATTTTCACTGGGTGCTCAATCAAACTA
7447722 C
65 C
* * * * * *
7447723 GCTTAAATTTGCATTGGTGCTAAATAATCTGGGTTTAAATTTTCATTGGGTG-TCAATTAAACTT
1 GCTTAAATTT-CATTGGTGCTAGATAATCTAGGCTTAAATTTTCACTGGGTGCTCAATCAAACTA
*
7447787 G
65 C
* * *
7447788 GCCTAAATTTTTATTGGTGCTAGATAATCTAGGCTTAAATCTTTCACTGAGTGC
1 GCTTAAA-TTTCATTGGTGCTAGATAATCTAGGCTTAAAT-TTTCACTGGGTGC
7447842 CAGCTAAGCT
Statistics
Matches: 97, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
64 1 0.01
65 79 0.81
66 17 0.18
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (65 bp):
GCTTAAATTTCATTGGTGCTAGATAATCTAGGCTTAAATTTTCACTGGGTGCTCAATCAAACTAC
Found at i:7447867 original size:34 final size:33
Alignment explanation
Indices: 7447757--7448113 Score: 167
Period size: 34 Copynumber: 10.8 Consensus size: 33
7447747 TAATCTGGGT
* * **
7447757 TTAAATTTTCATTGGGTGTCAATTAAACTTGG-C
1 TTAAATTTTCATTGAGTGCCAGCTAAAC-TGGAC
* * * * *
7447790 CTAAATTTTTATTG-GTGCTAGATAATCTAGG-C
1 TTAAATTTTCATTGAGTGCCAGCTAAACT-GGAC
* *
7447822 TTAAATCTTTCACTGAGTGCCAGCTAAGCTGGAC
1 TTAAAT-TTTCATTGAGTGCCAGCTAAACTGGAC
* * * * *
7447856 TTAAATATTTCACTGGGTGGCAGCAAAACTGGGC
1 TTAAAT-TTTCATTGAGTGCCAGCTAAACTGGAC
* * * *
7447890 TTAAATTTTCGTTGA-TGCTAGATAATCT-GAGC
1 TTAAATTTTCATTGAGTGCCAGCTAAACTGGA-C
* * ** *
7447922 TTAAATTTTCATTGGGTGTCAATTAAACTTGG-T
1 TTAAATTTTCATTGAGTGCCAGCTAAAC-TGGAC
* * * * *
7447955 TTAAATTTTTATTG-GTGCTAGATAATCTATG-C
1 TTAAATTTTCATTGAGTGCCAGCTAAACT-GGAC
7447987 TTAAATCTTTCATTGAGTGCCAGCTAAACTGGAC
1 TTAAAT-TTTCATTGAGTGCCAGCTAAACTGGAC
* * * *
7448021 TTAAATATTTCACTGGGTGCCAG-TAAAATTGGGC
1 TTAAAT-TTTCATTGAGTGCCAGCT-AAACTGGAC
* * * * *
7448055 TTAAATTTTTATTGA-TGCTAGATAAATTGGGC
1 TTAAATTTTCATTGAGTGCCAGCTAAACTGGAC
* * *
7448087 TTAAATCTTTCACTAAGTGCTAGCTAA
1 TTAAAT-TTTCATTGAGTGCCAGCTAA
7448114 GTTGAGGTTA
Statistics
Matches: 246, Mismatches: 62, Indels: 31
0.73 0.18 0.09
Matches are distributed among these distances:
31 3 0.01
32 73 0.30
33 68 0.28
34 101 0.41
35 1 0.00
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38
Consensus pattern (33 bp):
TTAAATTTTCATTGAGTGCCAGCTAAACTGGAC
Found at i:7447938 original size:65 final size:66
Alignment explanation
Indices: 7447855--7448032 Score: 198
Period size: 65 Copynumber: 2.7 Consensus size: 66
7447845 CTAAGCTGGA
* * * *
7447855 CTTAAATATTTCACTGGGTGGCAGCAAAACTGGGCTTAAATTTTCGTTGATGCTAGATAATCTGA
1 CTTAAATATTTCATTGGGTGCCAGCTAAACTGGGCTTAAATTTTCATTGATGCTAGATAATCT-A
7447920 -G
65 TG
* ** * * * *
7447921 CTTAAAT-TTTCATTGGGTGTCAATTAAACTTGGTTTAAATTTTTATTGGTGCTAGATAATCTAT
1 CTTAAATATTTCATTGGGTGCCAGCTAAACTGGGCTTAAATTTTCATTGATGCTAGATAATCTAT
7447985 G
66 G
* * *
7447986 CTTAAATCTTTCATTGAGTGCCAGCTAAACTGGACTTAAATATTTCA
1 CTTAAATATTTCATTGGGTGCCAGCTAAACTGGGCTTAAAT-TTTCA
7448033 CTGGGTGCCA
Statistics
Matches: 91, Mismatches: 18, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
64 1 0.01
65 53 0.58
66 33 0.36
67 4 0.04
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (66 bp):
CTTAAATATTTCATTGGGTGCCAGCTAAACTGGGCTTAAATTTTCATTGATGCTAGATAATCTAT
G
Found at i:7447970 original size:165 final size:165
Alignment explanation
Indices: 7447691--7448098 Score: 597
Period size: 165 Copynumber: 2.5 Consensus size: 165
7447681 ATAATCTAAG
* * ** * * *
7447691 CTTAAAT-TTTCACTGGGTGCTAATC-AAACTACGCTTAAATTTGCATTGGTGCTAAATAATCTG
1 CTTAAATATTTCACTGGGTGC-CAGCAAAACTGGGCTTAAATTTTCATTGATGCTAGATAATCTG
*
7447754 GGTTTAAATTTTCATTGGGTGTCAATTAAACTTGGCCTAAATTTTTATTGGTGCTAGATAATCTA
65 GGCTTAAATTTTCATTGGGTGTCAATTAAACTTGGCCTAAATTTTTATTGGTGCTAGATAATCTA
*
7447819 GGCTTAAATCTTTCACTGAGTGCCAGCTAAGCTGGA
130 GGCTTAAATCTTTCACTGAGTGCCAGCTAAACTGGA
* * *
7447855 CTTAAATATTTCACTGGGTGGCAGCAAAACTGGGCTTAAATTTTCGTTGATGCTAGATAATCTGA
1 CTTAAATATTTCACTGGGTGCCAGCAAAACTGGGCTTAAATTTTCATTGATGCTAGATAATCTGG
** *
7447920 GCTTAAATTTTCATTGGGTGTCAATTAAACTTGGTTTAAATTTTTATTGGTGCTAGATAATCTAT
66 GCTTAAATTTTCATTGGGTGTCAATTAAACTTGGCCTAAATTTTTATTGGTGCTAGATAATCTAG
*
7447985 GCTTAAATCTTTCATTGAGTGCCAGCTAAACTGGA
131 GCTTAAATCTTTCACTGAGTGCCAGCTAAACTGGA
* * *
7448020 CTTAAATATTTCACTGGGTGCCAGTAAAATTGGGCTTAAATTTTTATTGATGCTAGATAAAT-TG
1 CTTAAATATTTCACTGGGTGCCAGCAAAACTGGGCTTAAATTTTCATTGATGCTAGAT-AATCTG
7448084 GGCTTAAATCTTTCA
65 GGCTTAAAT-TTTCA
7448099 CTAAGTGCTA
Statistics
Matches: 218, Mismatches: 22, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
164 9 0.04
165 201 0.92
166 8 0.04
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38
Consensus pattern (165 bp):
CTTAAATATTTCACTGGGTGCCAGCAAAACTGGGCTTAAATTTTCATTGATGCTAGATAATCTGG
GCTTAAATTTTCATTGGGTGTCAATTAAACTTGGCCTAAATTTTTATTGGTGCTAGATAATCTAG
GCTTAAATCTTTCACTGAGTGCCAGCTAAACTGGA
Found at i:7448067 original size:100 final size:99
Alignment explanation
Indices: 7447887--7448113 Score: 257
Period size: 100 Copynumber: 2.3 Consensus size: 99
7447877 AGCAAAACTG
* * * * * *
7447887 GGCTTAAAT-TTTCGTTGA-TGCTAGATAATCTGAGCTTAAATTTTCATTGGGTGTCAATTAAAC
1 GGCTTAAATCTTTCATTGAGTGCTAGCTAAACTGAGCTTAAATTTTCACTGGGTGTCAAGTAAAA
* *
7447950 TTGGTTTAAATTTTTATTGGTGCTAGAT-AATCTA
66 TTGGCTTAAATTTTTATTGATGCTAGATAAAT-TA
* * *
7447984 TGCTTAAATCTTTCATTGAGTGCCAGCTAAACTG-GACTTAAATATTTCACTGGGTG-CCAGTAA
1 GGCTTAAATCTTTCATTGAGTGCTAGCTAAACTGAG-CTTAAAT-TTTCACTGGGTGTCAAGTAA
*
7448047 AATTGGGCTTAAATTTTTATTGATGCTAGATAAATTG
64 AATT-GGCTTAAATTTTTATTGATGCTAGATAAATTA
* *
7448084 GGCTTAAATCTTTCACTAAGTGCTAGCTAA
1 GGCTTAAATCTTTCATTGAGTGCTAGCTAA
7448114 GTTGAGGTTA
Statistics
Matches: 108, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
97 8 0.07
98 9 0.08
99 26 0.24
100 62 0.57
101 3 0.03
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.39
Consensus pattern (99 bp):
GGCTTAAATCTTTCATTGAGTGCTAGCTAAACTGAGCTTAAATTTTCACTGGGTGTCAAGTAAAA
TTGGCTTAAATTTTTATTGATGCTAGATAAATTA
Found at i:7448125 original size:34 final size:33
Alignment explanation
Indices: 7448070--7448146 Score: 93
Period size: 34 Copynumber: 2.3 Consensus size: 33
7448060 TTTTTATTGA
*
7448070 TGCTAGATAAATTGGGCTTAAATCTTTCACTAAG
1 TGCTAGATAAATTGGGCTTAAAAC-TTCACTAAG
* * *
7448104 TGCTAGCTAAGTTGAGG-TTAAAACTTCATTAAG
1 TGCTAGATAAATTG-GGCTTAAAACTTCACTAAG
7448137 TGCTAGATAA
1 TGCTAGATAA
7448147 TCTAAGTTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
33 17 0.46
34 18 0.49
35 2 0.05
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (33 bp):
TGCTAGATAAATTGGGCTTAAAACTTCACTAAG
Found at i:7448175 original size:165 final size:165
Alignment explanation
Indices: 7447691--7448196 Score: 499
Period size: 165 Copynumber: 3.1 Consensus size: 165
7447681 ATAATCTAAG
* * ** * * *
7447691 CTTAAAT-TTTCACTGGGTGCTAATC-AAACTACGCTTAAATTTGCATTGGTGCTAAATAATCTG
1 CTTAAATATTTCACTGGGTGC-CAGCAAAACTGGGCTTAAATTTTCATTGATGCTAGATAATCTG
* * * ** * ** ** * *
7447754 GGTTTAAATTTTCATTGGGTGTCAATTAAACTTGGCCTAAATTTTTATTGGTGCTAGATAATCTA
65 AGCTTAAATTTTCACTAAGTGTCAACTAAACTTGGGTTAAAACTTCATTAGTGCTAGATAATCTA
* * *
7447819 GGCTTAAATCTTTCACTGAGTGCCAGCTAAGCTGGA
130 AGCTTAAATCTTTCATTGAGTGCCAGCTAAACTGGA
* *
7447855 CTTAAATATTTCACTGGGTGGCAGCAAAACTGGGCTTAAATTTTCGTTGATGCTAGATAATCTGA
1 CTTAAATATTTCACTGGGTGCCAGCAAAACTGGGCTTAAATTTTCATTGATGCTAGATAATCTGA
* ** * * ** * * *
7447920 GCTTAAATTTTCATTGGGTGTCAATTAAACTTGGTTTAAATTTTTATTGGTGCTAGATAATCTAT
66 GCTTAAATTTTCACTAAGTGTCAACTAAACTTGGGTTAAAACTTCATTAGTGCTAGATAATCTAA
7447985 GCTTAAATCTTTCATTGAGTGCCAGCTAAACTGGA
131 GCTTAAATCTTTCATTGAGTGCCAGCTAAACTGGA
* * *
7448020 CTTAAATATTTCACTGGGTGCCAGTAAAATTGGGCTTAAATTTTTATTGATGCTAGATAAAT-TG
1 CTTAAATATTTCACTGGGTGCCAGCAAAACTGGGCTTAAATTTTCATTGATGCTAGAT-AATCTG
* * *
7448084 GGCTTAAATCTTTCACTAAGTG-CTAGCT-AAGTTGAGGTTAAAACTTCATTAAGTGCTAGATAA
65 AGCTTAAAT-TTTCACTAAGTGTC-AACTAAACTTG-GGTTAAAACTTCATT-AGTGCTAGATAA
*
7448147 TCTAAGTTTAAAT-TTT-ATT-AGATGCCAGCTAAACT-GA
126 TCTAAGCTTAAATCTTTCATTGAG-TGCCAGCTAAACTGGA
*
7448184 GCTTAAATTTTTC
1 -CTTAAATATTTC
7448197 TTATGTGTCA
Statistics
Matches: 297, Mismatches: 36, Indels: 17
0.85 0.10 0.05
Matches are distributed among these distances:
164 13 0.04
165 234 0.79
166 28 0.09
167 22 0.07
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38
Consensus pattern (165 bp):
CTTAAATATTTCACTGGGTGCCAGCAAAACTGGGCTTAAATTTTCATTGATGCTAGATAATCTGA
GCTTAAATTTTCACTAAGTGTCAACTAAACTTGGGTTAAAACTTCATTAGTGCTAGATAATCTAA
GCTTAAATCTTTCATTGAGTGCCAGCTAAACTGGA
Found at i:7449455 original size:22 final size:21
Alignment explanation
Indices: 7449414--7449457 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
7449404 TTTCTTTTAG
*
7449414 TTTTTTTTCTTTTTCCATACT
1 TTTTTTTTCTTTTTCAATACT
*
7449435 TTTTTTTTCTTTTTTTAATACT
1 TTTTTTTTC-TTTTTCAATACT
7449457 T
1 T
7449458 CCACTTCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.75
Consensus pattern (21 bp):
TTTTTTTTCTTTTTCAATACT
Found at i:7454675 original size:10 final size:10
Alignment explanation
Indices: 7454662--7454691 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
7454652 CATGTAAGTG
7454662 AATGTGCAAA
1 AATGTGCAAA
*
7454672 AATGTACAAA
1 AATGTGCAAA
7454682 AATGTGCAAA
1 AATGTGCAAA
7454692 GCAGTATATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.53, C:0.10, G:0.17, T:0.20
Consensus pattern (10 bp):
AATGTGCAAA
Found at i:7455122 original size:154 final size:155
Alignment explanation
Indices: 7454839--7455148 Score: 500
Period size: 154 Copynumber: 2.0 Consensus size: 155
7454829 AACTAAAACA
7454839 AATTAAATCTAAAACTTTCAATAGCGCATGTTTAGAATTTTTAGCCAGACTCTCAAAATCTCCCC
1 AATTAAATCTAAAACTTTCAATAGCGCATGTTTAGAATTTTTAGCCAGACTCTCAAAATCTCCCC
* * * *
7454904 AATAGATTACCAAGCTGTCATAATGTATCAGTTTGAAGACTTGATCACTAGACGTAAAATTTT-A
66 AATAGATTACAAAGCTGTCATAACGTATCAGTTTGAAGACTTGATCACTAAACATAAAATTTTAA
*
7454968 AATCGTGAAAATACAAAGAATTGTC
131 AATCGTAAAAATACAAAGAATTGTC
7454993 AATTAAAT-TCAAAACTTTCAATAGCGCATGTTTAGAATTTTTAGCCAGACTCTCAAAATCTCCC
1 AATTAAATCT-AAAACTTTCAATAGCGCATGTTTAGAATTTTTAGCCAGACTCTCAAAATCTCCC
* * * *
7455057 CAGTGGATTCACAAAGTTGTCATAACGTATCAGTTTGAAGACTTGATCGCTAAACATAAAA-TTT
65 CAATAGATT-ACAAAGCTGTCATAACGTATCAGTTTGAAGACTTGATCACTAAACATAAAATTTT
7455121 AAAATCGTAAAAATACAAAGAATTGTC
129 AAAATCGTAAAAATACAAAGAATTGTC
7455148 A
1 A
7455149 CCTATTTTTT
Statistics
Matches: 144, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
153 1 0.01
154 72 0.50
155 71 0.49
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.31
Consensus pattern (155 bp):
AATTAAATCTAAAACTTTCAATAGCGCATGTTTAGAATTTTTAGCCAGACTCTCAAAATCTCCCC
AATAGATTACAAAGCTGTCATAACGTATCAGTTTGAAGACTTGATCACTAAACATAAAATTTTAA
AATCGTAAAAATACAAAGAATTGTC
Found at i:7455188 original size:155 final size:154
Alignment explanation
Indices: 7454839--7455148 Score: 397
Period size: 155 Copynumber: 2.0 Consensus size: 154
7454829 AACTAAAACA
* **** *
7454839 AATTAAA-TCTAAAACTTTCAATAGCGCATGTTTAGAATTTTTAGCCAGACTCTCAAAATCTCCC
1 AATTAAATTC-AAAACTGTCAATAGCGCATCCCAAAAATTTTTAGCCAGACTCTCAAAATCTCCC
* * * * *
7454903 CAATAGATTACCAAGCTGTCATAATGTATCAGTTTGAAGACTTGATCACTAGACGTAAAATTTTA
65 CAATAGATTACAAAGCTGTCATAACGTATCAGTTTGAAGACTTGATCACTAAACATAAAATTTAA
*
7454968 AATCGTGAAAATACAAAGAATTGTC
130 AATCGTAAAAATACAAAGAATTGTC
* **** *
7454993 AATTAAATTCAAAACTTTCAATAGCGCATGTTTAGAATTTTTAGCCAGACTCTCAAAATCTCCCC
1 AATTAAATTCAAAACTGTCAATAGCGCATCCCAAAAATTTTTAGCCAGACTCTCAAAATCTCCCC
* * * *
7455058 AGTGGATTCACAAAGTTGTCATAACGTATCAGTTTGAAGACTTGATCGCTAAACATAAAATTTAA
66 AATAGATT-ACAAAGCTGTCATAACGTATCAGTTTGAAGACTTGATCACTAAACATAAAATTTAA
7455123 AATCGTAAAAATACAAAGAATTGTC
130 AATCGTAAAAATACAAAGAATTGTC
7455148 A
1 A
7455149 CCTATTTTTT
Statistics
Matches: 144, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
154 68 0.47
155 76 0.53
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.31
Consensus pattern (154 bp):
AATTAAATTCAAAACTGTCAATAGCGCATCCCAAAAATTTTTAGCCAGACTCTCAAAATCTCCCC
AATAGATTACAAAGCTGTCATAACGTATCAGTTTGAAGACTTGATCACTAAACATAAAATTTAAA
ATCGTAAAAATACAAAGAATTGTC
Found at i:7456490 original size:14 final size:13
Alignment explanation
Indices: 7456471--7456500 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
7456461 TTCCATTGAA
7456471 ATTTATTATTATTT
1 ATTTATTATT-TTT
7456485 ATTTATTATTTTT
1 ATTTATTATTTTT
7456498 ATT
1 ATT
7456501 ATTTAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (13 bp):
ATTTATTATTTTT
Found at i:7456512 original size:20 final size:21
Alignment explanation
Indices: 7456471--7456513 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
7456461 TTCCATTGAA
* *
7456471 ATTTATTATTATTTATTTATT
1 ATTTATTATTATTTAATAATT
7456492 ATTT-TTATTATTTAATAATT
1 ATTTATTATTATTTAATAATT
7456512 AT
1 AT
7456514 CCAATATTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (21 bp):
ATTTATTATTATTTAATAATT
Found at i:7456999 original size:59 final size:59
Alignment explanation
Indices: 7456924--7457037 Score: 165
Period size: 59 Copynumber: 1.9 Consensus size: 59
7456914 AGGAAATGAG
* * **
7456924 AGACCAATAAATAAAAGCAGTGAAGCAAAACATGTTGAACCGGAAAATGACAACATGCA
1 AGACAAATAAATAAAAGCAGTGAAGCAAAAAATGTTGAACCAAAAAATGACAACATGCA
* * *
7456983 AGACAAATGAATAAAAGCAGTGAAGTAAAAAATGTTGAATCAAAAAATGACAACA
1 AGACAAATAAATAAAAGCAGTGAAGCAAAAAATGTTGAACCAAAAAATGACAACA
7457038 ATGAATAGAA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
59 48 1.00
ACGTcount: A:0.54, C:0.13, G:0.18, T:0.15
Consensus pattern (59 bp):
AGACAAATAAATAAAAGCAGTGAAGCAAAAAATGTTGAACCAAAAAATGACAACATGCA
Found at i:7458497 original size:25 final size:25
Alignment explanation
Indices: 7458448--7458504 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
7458438 TAAATGAGCC
*
7458448 TTTTATTTTATTTGGACTTTATTATT
1 TTTTA-TTTATTTGGACTTTATTATA
*
7458474 TTTTATTTATTTGG-CTTTTTTTATA
1 TTTTATTTATTTGGAC-TTTATTATA
7458499 TTTTAT
1 TTTTAT
7458505 ATTTTTTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 1 0.04
25 22 0.79
26 5 0.18
ACGTcount: A:0.18, C:0.04, G:0.07, T:0.72
Consensus pattern (25 bp):
TTTTATTTATTTGGACTTTATTATA
Done.