Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14313602
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 50000 characters in sequence are not A, C, G, or T
File 34 of 74
Found at i:7458509 original size:15 final size:14
Alignment explanation
Indices: 7458490--7458523 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
7458480 TTATTTGGCT
7458490 TTTTTTATATTTTA
1 TTTTTTATATTTTA
*
7458504 TATTTTTTTATTTTA
1 T-TTTTTATATTTTA
7458519 TTTTT
1 TTTTT
7458524 GAAAAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTTTTATATTTTA
Found at i:7464866 original size:2 final size:2
Alignment explanation
Indices: 7464861--7464890 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
7464851 TTTTTTTGTT
7464861 TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7464891 TCTAAAGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7465064 original size:15 final size:16
Alignment explanation
Indices: 7465041--7465073 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
7465031 TTGAAGTATT
*
7465041 TTTATAATTT-AATTA
1 TTTAAAATTTCAATTA
7465056 TTTAAAATTTCAATTA
1 TTTAAAATTTCAATTA
7465072 TT
1 TT
7465074 ATTTCAATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (16 bp):
TTTAAAATTTCAATTA
Found at i:7470145 original size:19 final size:19
Alignment explanation
Indices: 7470109--7470145 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7470099 TTGGAATGGA
*
7470109 TATTAAAAAAAAAGTTTTG
1 TATTAAAAAAAAACTTTTG
*
7470128 TATTAAAAAAATACTTTT
1 TATTAAAAAAAAACTTTT
7470146 ACTATTGAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (19 bp):
TATTAAAAAAAAACTTTTG
Found at i:7470151 original size:20 final size:19
Alignment explanation
Indices: 7470109--7470151 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
7470099 TTGGAATGGA
* *
7470109 TATTAAAAAAAAAGTTTTG
1 TATTAAAAAAAAACTTTTC
*
7470128 TATTAAAAAAATACTTTTAC
1 TATTAAAAAAAAACTTTT-C
7470148 TATT
1 TATT
7470152 GAAGATTATC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.42
Consensus pattern (19 bp):
TATTAAAAAAAAACTTTTC
Found at i:7472547 original size:22 final size:22
Alignment explanation
Indices: 7472499--7472548 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
7472489 TAAAGTGATC
*
7472499 GCTAATCTAGGCTTGCATGCCA
1 GCTAATCTAGGCTTGCATACCA
* * *
7472521 ACTAATCTAGGCTTTCTTACCA
1 GCTAATCTAGGCTTGCATACCA
7472543 GCTAAT
1 GCTAAT
7472549 TTTAAGCTTA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (22 bp):
GCTAATCTAGGCTTGCATACCA
Found at i:7472623 original size:32 final size:31
Alignment explanation
Indices: 7472586--7472771 Score: 153
Period size: 32 Copynumber: 5.7 Consensus size: 31
7472576 GATTAAATTG
7472586 GGCTTAAA-TTTCATTAGGTGCTAGATAATCTA
1 GGCTTAAATTTTCATT-GGTGCTA-ATAATCTA
* * * * **
7472618 AGCTT-AACTTTCACTGGGTGCTAATCAAACCG
1 GGCTTAAATTTTCA-TTGGTGCTAAT-AATCTA
* *
7472650 GGCTTAAATTTTCATTGGTACTAAATAATCTG
1 GGCTTAAATTTTCATTGGTGCT-AATAATCTA
* *
7472682 GGCTTAAATTTTCATTGGGTG-TCAATTAAACTT
1 GGCTTAAATTTTCATT-GGTGCT-AA-TAATCTA
*
7472715 GGCTTAAATTTTTATTGGTGCTAGATAATCTA
1 GGCTTAAATTTTCATTGGTGCTA-ATAATCTA
7472747 GGCTTAAATCTTTCATTGAGTGCTA
1 GGCTTAAAT-TTTCATTG-GTGCTA
7472772 CCTAAGCTGG
Statistics
Matches: 124, Mismatches: 19, Indels: 20
0.76 0.12 0.12
Matches are distributed among these distances:
31 4 0.03
32 71 0.57
33 43 0.35
34 6 0.05
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (31 bp):
GGCTTAAATTTTCATTGGTGCTAATAATCTA
Found at i:7472719 original size:65 final size:64
Alignment explanation
Indices: 7472554--7472761 Score: 224
Period size: 65 Copynumber: 3.2 Consensus size: 64
7472544 CTAATTTTAA
* * *
7472554 GCTTAAATTTTCACTAGGTACCGATTAAA-TTGGGCTTAAA-TTTCATTAGGTGCTAGATAATCT
1 GCTTAAATTTTCACTGGGT-GCAATTAAACTT-GGCTTAAATTTTCATT-GGTGCTAGATAATCT
*
7472617 AA
63 AG
* * ** * * *
7472619 GCTT-AACTTTCACTGGGTGCTAATCAAACCGGGCTTAAATTTTCATTGGTACTAAATAATCTGG
1 GCTTAAATTTTCACTGGGTGC-AATTAAACTTGGCTTAAATTTTCATTGGTGCTAGATAATCTAG
* *
7472683 GCTTAAATTTTCATTGGGTGTCAATTAAACTTGGCTTAAATTTTTATTGGTGCTAGATAATCTAG
1 GCTTAAATTTTCACTGGGTG-CAATTAAACTTGGCTTAAATTTTCATTGGTGCTAGATAATCTAG
7472748 GCTTAAATCTTTCA
1 GCTTAAAT-TTTCA
7472762 TTGAGTGCTA
Statistics
Matches: 117, Mismatches: 20, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
63 1 0.01
64 42 0.36
65 68 0.58
66 6 0.05
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.38
Consensus pattern (64 bp):
GCTTAAATTTTCACTGGGTGCAATTAAACTTGGCTTAAATTTTCATTGGTGCTAGATAATCTAG
Found at i:7472724 original size:33 final size:33
Alignment explanation
Indices: 7472554--7472829 Score: 143
Period size: 32 Copynumber: 8.4 Consensus size: 33
7472544 CTAATTTTAA
* * ** * *
7472554 GCTTAAATTTTCACTAGGTACCGATTAAATTGG
1 GCTTAAATTTTCATTGGGTACTAAATAAACTGG
* * * * **
7472587 GCTTAAA-TTTCATTAGGTGCTAGATAATCTAA
1 GCTTAAATTTTCATTGGGTACTAAATAAACTGG
* * * *
7472619 GCTT-AACTTTCACTGGGTGCT-AATCAAACCGG
1 GCTTAAATTTTCATTGGGTACTAAAT-AAACTGG
*
7472651 GCTTAAATTTTCATT-GGTACTAAATAATCTGG
1 GCTTAAATTTTCATTGGGTACTAAATAAACTGG
* * *
7472683 GCTTAAATTTTCATTGGGT-GTCAATTAAACTTG
1 GCTTAAATTTTCATTGGGTACT-AAATAAACTGG
* * * * *
7472716 GCTTAAATTTTTATT-GGTGCTAGATAATCTAG
1 GCTTAAATTTTCATTGGGTACTAAATAAACTGG
* * ** *
7472748 GCTTAAATCTTTCATTGAGTGCTACCTAAGCTGG
1 GCTTAAAT-TTTCATTGGGTACTAAATAAACTGG
* * ** *
7472782 ACTTAAATATTTCACTGGGTGTTAGCA-AAACTGG
1 GCTTAAAT-TTTCATTGGGTACTA-AATAAACTGG
7472816 GCTTAAATTTTCAT
1 GCTTAAATTTTCAT
7472830 CGATGCTAGA
Statistics
Matches: 186, Mismatches: 47, Indels: 20
0.74 0.19 0.08
Matches are distributed among these distances:
31 4 0.02
32 82 0.44
33 55 0.30
34 44 0.24
35 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (33 bp):
GCTTAAATTTTCATTGGGTACTAAATAAACTGG
Found at i:7472819 original size:100 final size:98
Alignment explanation
Indices: 7472650--7472880 Score: 259
Period size: 100 Copynumber: 2.3 Consensus size: 98
7472640 AATCAAACCG
* * * * * **
7472650 GGCTTAAAT-TTTCATTG-GTACTAAATAATCTGGGCTTAAATTTTCATTGGGTGTCAATTAAAC
1 GGCTTAAATCTTTCATTGAGTGCTAACTAAGCTGGACTTAAATTTTCACTGGGTGTCAACAAAAC
* * * *
7472713 TTGGCTTAAATTTTTATTGGTGCTAGATAATCTA
66 TGGGCTTAAATTTTCATCGATGCTAGATAAT-TA
* * *
7472747 GGCTTAAATCTTTCATTGAGTGCTACCTAAGCTGGACTTAAATATTTCACTGGGTGTTAGCAAAA
1 GGCTTAAATCTTTCATTGAGTGCTAACTAAGCTGGACTTAAAT-TTTCACTGGGTGTCAACAAAA
*
7472812 CTGGGCTTAAATTTTCATCGATGCTAGATAATTT
65 CTGGGCTTAAATTTTCATCGATGCTAGATAATTA
* * *
7472846 GAGCTTAAATCTTTCACTAAGTGCTAGCTAAGCTG
1 G-GCTTAAATCTTTCATTGAGTGCTAACTAAGCTG
7472881 AGGTTAAAAC
Statistics
Matches: 112, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
97 9 0.08
98 8 0.07
99 21 0.19
100 74 0.66
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.38
Consensus pattern (98 bp):
GGCTTAAATCTTTCATTGAGTGCTAACTAAGCTGGACTTAAATTTTCACTGGGTGTCAACAAAAC
TGGGCTTAAATTTTCATCGATGCTAGATAATTA
Found at i:7472888 original size:34 final size:35
Alignment explanation
Indices: 7472732--7473024 Score: 133
Period size: 34 Copynumber: 8.8 Consensus size: 35
7472722 ATTTTTATTG
* *
7472732 GTGCTAGATAATCT-AGGCTTAAATCTTTCATTGA
1 GTGCTAGATAATCTGAGGCTTAAATCTTTCACTAA
** * * * **
7472766 GTGCTACCTAAGCTG-GACTTAAATATTTCACTGG
1 GTGCTAGATAATCTGAGGCTTAAATCTTTCACTAA
* * *
7472800 GTGTTAGCA-AAACTG-GGCTTAAAT-TTTCA-T-C
1 GTGCTAG-ATAATCTGAGGCTTAAATCTTTCACTAA
*
7472831 GATGCTAGATAATTTGA-GCTTAAATCTTTCACTAA
1 G-TGCTAGATAATCTGAGGCTTAAATCTTTCACTAA
* * * *
7472866 GTGCTAGCTAAGCTGAGG-TTAAAAC-TTCATTAA
1 GTGCTAGATAATCTGAGGCTTAAATCTTTCACTAA
* * *
7472899 ATGCTAGATAATCT-AGGTTTAAAT-TTT-A-TTA
1 GTGCTAGATAATCTGAGGCTTAAATCTTTCACTAA
* * * * *
7472930 GATGCCAGCTAAAT-TGA-GCTTAAATTTTTC-TTAT
1 G-TGCTAGAT-AATCTGAGGCTTAAATCTTTCACTAA
* * *
7472964 GTGCCAAATAAACT-AGGCTTAAATCTTTTCAC-AA
1 GTGCTAGATAATCTGAGGCTTAAATC-TTTCACTAA
7472998 GTGCTAGATAAAT-TG-GGCTTAAATCTT
1 GTGCTAGAT-AATCTGAGGCTTAAATCTT
7473025 CATTAGTGGC
Statistics
Matches: 194, Mismatches: 42, Indels: 47
0.69 0.15 0.17
Matches are distributed among these distances:
31 4 0.02
32 39 0.20
33 59 0.30
34 88 0.45
35 4 0.02
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (35 bp):
GTGCTAGATAATCTGAGGCTTAAATCTTTCACTAA
Found at i:7473003 original size:99 final size:97
Alignment explanation
Indices: 7472900--7473187 Score: 230
Period size: 97 Copynumber: 2.9 Consensus size: 97
7472890 CTTCATTAAA
* * * *
7472900 TGCTAGAT-AATCTAGGTTTAAAT-TTTATTAGATGCCAGCTAAATTGAGCTTAAATTTTTC-TT
1 TGCTAGATAAAT-TAGGCTTAAATCTTCATTAG-TGCCAGCTAAAATG-GCTTAAA-TCTTCATT
*
7472962 ATGTGCCAAATAAACTAGGCTTAAATCTTTTCACAAG
62 -GGTGCCAAATAAACTAGGCTTAAATCTTTTCACAAG
* *
7472999 TGCTAGATAAATTGGGCTTAAATCTTCATTAGTGGCAGCTAAAATGGCTTAAATCTTCATTGGTG
1 TGCTAGATAAATTAGGCTTAAATCTTCATTAGTGCCAGCTAAAATGGCTTAAATCTTCATTGGTG
* * * * *
7473064 CTAATTACACTAGGCTTAAATCTTTTAATGAA-
66 CCAAATAAACTAGGCTTAAATCTTTTCA-CAAG
* * * * * * *
7473096 TG-TCAGATAAACTAGGCTTAAATCTTTATTGGGTGTC-GATAAACTAGGCTTAAATATTTCATT
1 TGCT-AGATAAATTAGGCTTAAATCTTCATT-AGTGCCAGCTAAAAT-GGCTTAAAT-CTTCATT
* * *
7473159 GGGTGCCAAGTAAATTAGGC-TAAAACTTT
62 -GGTGCCAAATAAACTAGGCTTAAATCTTT
7473188 ATTGAGGGTC
Statistics
Matches: 155, Mismatches: 25, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
96 1 0.01
97 62 0.40
98 24 0.15
99 43 0.28
100 25 0.16
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (97 bp):
TGCTAGATAAATTAGGCTTAAATCTTCATTAGTGCCAGCTAAAATGGCTTAAATCTTCATTGGTG
CCAAATAAACTAGGCTTAAATCTTTTCACAAG
Found at i:7473142 original size:32 final size:33
Alignment explanation
Indices: 7473044--7473225 Score: 160
Period size: 32 Copynumber: 5.5 Consensus size: 33
7473034 CAGCTAAAAT
* * *
7473044 GGCTTAAATCTTCATT-GGTG-CTAATTACACTA
1 GGCTTAAATCTTTATTGGGTGTC-AAGTAAACTA
* **
7473076 GGCTTAAATCTTTTAATGAATGTC-AGATAAACTA
1 GGCTTAAATC-TTTATTGGGTGTCAAG-TAAACTA
*
7473110 GGCTTAAATCTTTATTGGGTGTCGA-TAAACTA
1 GGCTTAAATCTTTATTGGGTGTCAAGTAAACTA
* * *
7473142 GGCTTAAATATTTCATTGGGTGCCAAGTAAATTA
1 GGCTTAAATCTTT-ATTGGGTGTCAAGTAAACTA
* *
7473176 GGC-TAAAACTTTATTGAGG-GTCAATTAAACTA
1 GGCTTAAATCTTTATTG-GGTGTCAAGTAAACTA
*
7473208 AGCTTAAATCTTTATTGG
1 GGCTTAAATCTTTATTGG
7473226 TACCATTTAA
Statistics
Matches: 121, Mismatches: 20, Indels: 18
0.76 0.13 0.11
Matches are distributed among these distances:
32 46 0.38
33 46 0.38
34 28 0.23
35 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.36
Consensus pattern (33 bp):
GGCTTAAATCTTTATTGGGTGTCAAGTAAACTA
Found at i:7473142 original size:66 final size:66
Alignment explanation
Indices: 7473066--7473220 Score: 163
Period size: 66 Copynumber: 2.3 Consensus size: 66
7473056 CATTGGTGCT
* * * *
7473066 AATTACACTAGGCTTAAATCTTTTAATGAATGTC-AGATAAACTAGGCTTAAATCTTTATTG-GG
1 AATTAAACTAGGCTTAAATCTTTCAATGAATGCCAAG-TAAACTAGGC-TAAAACTTTATTGAGG
7473129 TGTC
64 -GTC
* * * ** *
7473133 GA-TAAACTAGGCTTAAATATTTCATTGGGTGCCAAGTAAATTAGGCTAAAACTTTATTGAGGGT
1 AATTAAACTAGGCTTAAATCTTTCAATGAATGCCAAGTAAACTAGGCTAAAACTTTATTGAGGGT
7473197 C
66 C
*
7473198 AATTAAACTAAGCTTAAATCTTT
1 AATTAAACTAGGCTTAAATCTTT
7473221 ATTGGTACCA
Statistics
Matches: 72, Mismatches: 13, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
65 16 0.22
66 53 0.74
67 3 0.04
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (66 bp):
AATTAAACTAGGCTTAAATCTTTCAATGAATGCCAAGTAAACTAGGCTAAAACTTTATTGAGGGT
C
Found at i:7474524 original size:41 final size:42
Alignment explanation
Indices: 7474452--7474530 Score: 142
Period size: 41 Copynumber: 1.9 Consensus size: 42
7474442 AAAAATCTAT
7474452 TTTAAGGTATATTTTTTTTCAATTTCATGTGCTTTCCAACCA
1 TTTAAGGTATATTTTTTTTCAATTTCATGTGCTTTCCAACCA
*
7474494 TTTAAGGTATA-TTTTTTTCAATTTCGTGTGCTTTCCA
1 TTTAAGGTATATTTTTTTTCAATTTCATGTGCTTTCCA
7474531 GCGATTCATT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
41 25 0.69
42 11 0.31
ACGTcount: A:0.22, C:0.15, G:0.11, T:0.52
Consensus pattern (42 bp):
TTTAAGGTATATTTTTTTTCAATTTCATGTGCTTTCCAACCA
Found at i:7474607 original size:22 final size:23
Alignment explanation
Indices: 7474549--7474610 Score: 63
Period size: 25 Copynumber: 2.6 Consensus size: 23
7474539 TTTCATTTCA
*
7474549 TTTTCTTTTTTTCTTGTTCTTCCT
1 TTTTCTTTTTTT-TTGTTCTTACT
*
7474573 TTCTT-TTAGTTTTTTTTTTCTTACT
1 TT-TTCTT--TTTTTTTGTTCTTACT
7474598 TTTTCTTTTTTTT
1 TTTTCTTTTTTTT
7474611 CTTTTTTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
23 6 0.19
24 6 0.19
25 15 0.47
26 5 0.16
ACGTcount: A:0.03, C:0.15, G:0.03, T:0.79
Consensus pattern (23 bp):
TTTTCTTTTTTTTTGTTCTTACT
Found at i:7474609 original size:9 final size:9
Alignment explanation
Indices: 7474584--7474618 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
7474574 TCTTTTAGTT
7474584 TTTTTTTTC
1 TTTTTTTTC
*
7474593 TTACTTTTTC
1 TT-TTTTTTC
7474603 TTTTTTTTC
1 TTTTTTTTC
7474612 TTTTTTT
1 TTTTTTT
7474619 AATACTTTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.86
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:7474615 original size:27 final size:31
Alignment explanation
Indices: 7474539--7474618 Score: 80
Period size: 27 Copynumber: 2.7 Consensus size: 31
7474529 CAGCGATTCA
* *
7474539 TTTCATTTCATTTTCTTTTTTTCTTGTTCTTCC
1 TTTC-TTTTATTTTCTTTTTTTCTTGTACTT-C
*
7474572 TTTCTTTTAGTTT-TTTTTTTC-T-TACTT-
1 TTTCTTTTATTTTCTTTTTTTCTTGTACTTC
7474599 TTTCTTTT-TTTTCTTTTTTT
1 TTTCTTTTATTTTCTTTTTTT
7474619 AATACTTTCA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
26 3 0.07
27 15 0.36
29 4 0.10
30 1 0.02
31 8 0.19
32 7 0.17
33 4 0.10
ACGTcount: A:0.05, C:0.15, G:0.03, T:0.78
Consensus pattern (31 bp):
TTTCTTTTATTTTCTTTTTTTCTTGTACTTC
Found at i:7476065 original size:10 final size:10
Alignment explanation
Indices: 7476047--7476082 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
7476037 TTTTCTCATT
7476047 TTTTGTCTTTC
1 TTTT-TCTTTC
7476058 TTTTTCTTTC
1 TTTTTCTTTC
*
7476068 TTTTTTTTTC
1 TTTTTCTTTC
7476078 TTTTT
1 TTTTT
7476083 TTATGGCATT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 20 0.83
11 4 0.17
ACGTcount: A:0.00, C:0.14, G:0.03, T:0.83
Consensus pattern (10 bp):
TTTTTCTTTC
Found at i:7476482 original size:70 final size:70
Alignment explanation
Indices: 7476396--7476538 Score: 286
Period size: 70 Copynumber: 2.0 Consensus size: 70
7476386 GGACTCATAA
7476396 CTTTTCCACTATCAATCATCAAAATCACTAAATAGTTCTTTCAACTTTACAGGATCTGCATCAAT
1 CTTTTCCACTATCAATCATCAAAATCACTAAATAGTTCTTTCAACTTTACAGGATCTGCATCAAT
7476461 GAAAG
66 GAAAG
7476466 CTTTTCCACTATCAATCATCAAAATCACTAAATAGTTCTTTCAACTTTACAGGATCTGCATCAAT
1 CTTTTCCACTATCAATCATCAAAATCACTAAATAGTTCTTTCAACTTTACAGGATCTGCATCAAT
7476531 GAAAG
66 GAAAG
7476536 CTT
1 CTT
7476539 GAATGGTATC
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 73 1.00
ACGTcount: A:0.35, C:0.23, G:0.08, T:0.34
Consensus pattern (70 bp):
CTTTTCCACTATCAATCATCAAAATCACTAAATAGTTCTTTCAACTTTACAGGATCTGCATCAAT
GAAAG
Found at i:7480380 original size:155 final size:155
Alignment explanation
Indices: 7480098--7480409 Score: 516
Period size: 155 Copynumber: 2.0 Consensus size: 155
7480088 CAACTAAAAC
*
7480098 CAATTAAATCCAAAACTTTCAATAGCGCATGTTTAGAATTTTTAGCCAAACTCTCAAAATCTCCC
1 CAATTAAATCCAAAACTTTCAATAGCGCATGTTTAGAATATTTAGCCAAACTCTCAAAATCTCCC
* * * *
7480163 CAGTAGATTCACCAAGCTGTCATAACATATCAGTTTGAAGACTTGATCGCTAAACGTAAAATTTA
66 CAATAGATTCACAAAGCTGTCATAACATATCAGTTTGAAGACTTGATCACTAAACATAAAATTTA
* * *
7480228 AAATCGTGACAATACGAAGAATTGT
131 AAATCGTAAAAATACAAAGAATTGT
*
7480253 CAATTAAATCCAAAACTTTCAATAGTGCATGTTTAGAATATTTAGCCAAACTCTCAAAATCTCCC
1 CAATTAAATCCAAAACTTTCAATAGCGCATGTTTAGAATATTTAGCCAAACTCTCAAAATCTCCC
* * *
7480318 CAATGGATTCACAAAGTTGTCATAACATATCAGTTTGAAGACTTGATCACTAGACATAAAATTTA
66 CAATAGATTCACAAAGCTGTCATAACATATCAGTTTGAAGACTTGATCACTAAACATAAAATTTA
7480383 AAATCGTAAAAATACAAAGAATTGT
131 AAATCGTAAAAATACAAAGAATTGT
7480408 CA
1 CA
7480410 CCAATGTTTT
Statistics
Matches: 145, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
155 145 1.00
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (155 bp):
CAATTAAATCCAAAACTTTCAATAGCGCATGTTTAGAATATTTAGCCAAACTCTCAAAATCTCCC
CAATAGATTCACAAAGCTGTCATAACATATCAGTTTGAAGACTTGATCACTAAACATAAAATTTA
AAATCGTAAAAATACAAAGAATTGT
Found at i:7481641 original size:14 final size:16
Alignment explanation
Indices: 7481611--7481644 Score: 54
Period size: 14 Copynumber: 2.2 Consensus size: 16
7481601 TTTTCTTTAG
7481611 ATTTACTAAAAACATA
1 ATTTACTAAAAACATA
7481627 ATTT-CTAAAAA-ATA
1 ATTTACTAAAAACATA
7481641 ATTT
1 ATTT
7481645 TTATATCTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 7 0.39
16 4 0.22
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (16 bp):
ATTTACTAAAAACATA
Found at i:7481748 original size:14 final size:13
Alignment explanation
Indices: 7481729--7481758 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
7481719 TTCCATTGAA
7481729 ATTTATTATTATTT
1 ATTTATTATT-TTT
7481743 ATTTATTATTTTT
1 ATTTATTATTTTT
7481756 ATT
1 ATT
7481759 ATTTAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (13 bp):
ATTTATTATTTTT
Found at i:7481771 original size:23 final size:21
Alignment explanation
Indices: 7481729--7481772 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
7481719 TTCCATTGAA
7481729 ATTTATTATTATTTATTTATT
1 ATTTATTATTATTTATTTATT
* *
7481750 ATTT-TTATTATTTAATAATT
1 ATTTATTATTATTTATTTATT
7481770 ATT
1 ATT
7481773 CAACATTTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (21 bp):
ATTTATTATTATTTATTTATT
Found at i:7482249 original size:59 final size:59
Alignment explanation
Indices: 7482175--7482288 Score: 174
Period size: 59 Copynumber: 1.9 Consensus size: 59
7482165 AGGAAATGAG
* ***
7482175 AGACCAATAAATAAAAGCAGTGAAGCAAAACATGTTGAATCGGAAAATGACAACATGCA
1 AGACAAATAAATAAAAGCAGTGAAGCAAAACATGTTGAATAAAAAAATGACAACATGCA
* *
7482234 AGACAAATGAATAAAAGCAGTGAAGTAAAACATGTTGAATAAAAAAATGACAACA
1 AGACAAATAAATAAAAGCAGTGAAGCAAAACATGTTGAATAAAAAAATGACAACA
7482289 ATGAATAGAA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
59 49 1.00
ACGTcount: A:0.54, C:0.12, G:0.18, T:0.16
Consensus pattern (59 bp):
AGACAAATAAATAAAAGCAGTGAAGCAAAACATGTTGAATAAAAAAATGACAACATGCA
Found at i:7483869 original size:20 final size:20
Alignment explanation
Indices: 7483831--7483868 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7483821 GATTGTGTTA
*
7483831 TATATTAATTTATAATTTTG
1 TATATGAATTTATAATTTTG
7483851 TATATGAATTT-TAATTTT
1 TATATGAATTTATAATTTT
7483869 TTTTGTTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (20 bp):
TATATGAATTTATAATTTTG
Found at i:7484123 original size:26 final size:26
Alignment explanation
Indices: 7484095--7484143 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
7484085 TAAAAAATAA
*
7484095 AAAATATAGGTTTGAAAA-TTTTATT
1 AAAATATAAGTTTGAAAACTTTTATT
7484120 AAAATATAAGTTTGAAAACTTTTA
1 AAAATATAAGTTTGAAAACTTTTA
7484144 ATTTTTGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.47, C:0.02, G:0.10, T:0.41
Consensus pattern (26 bp):
AAAATATAAGTTTGAAAACTTTTATT
Found at i:7487563 original size:6 final size:6
Alignment explanation
Indices: 7487554--7487597 Score: 61
Period size: 6 Copynumber: 7.3 Consensus size: 6
7487544 TTTAAGTCCA
* * *
7487554 GATGAT GATGGT GATGGA GATGGT GATGGT GATGGT AATGGT GA
1 GATGGT GATGGT GATGGT GATGGT GATGGT GATGGT GATGGT GA
7487598 GAATTTTGGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.25, C:0.00, G:0.45, T:0.30
Consensus pattern (6 bp):
GATGGT
Found at i:7487944 original size:21 final size:19
Alignment explanation
Indices: 7487918--7487994 Score: 86
Period size: 21 Copynumber: 3.9 Consensus size: 19
7487908 CTCATGGTTA
*
7487918 TCCACCTCCATATGATTATCC
1 TCCACCTCCAAATG--TATCC
7487939 TCCACCT-CAAATGTATCC
1 TCCACCTCCAAATGTATCC
*
7487957 TCCACCTCCTCAAATATATCC
1 TCCACCT-C-CAAATGTATCC
7487978 TCCACCT-CAAATGTATC
1 TCCACCTCCAAATGTATC
7487995 AAGAACAAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 9
0.81 0.05 0.15
Matches are distributed among these distances:
18 21 0.42
20 5 0.10
21 24 0.48
ACGTcount: A:0.27, C:0.39, G:0.04, T:0.30
Consensus pattern (19 bp):
TCCACCTCCAAATGTATCC
Found at i:7487955 original size:18 final size:18
Alignment explanation
Indices: 7487934--7487994 Score: 86
Period size: 18 Copynumber: 3.2 Consensus size: 18
7487924 TCCATATGAT
7487934 TATCCTCCACCTCAAATG
1 TATCCTCCACCTCAAATG
*
7487952 TATCCTCCACCTCCTCAAATA
1 TATCCTCCA---CCTCAAATG
7487973 TATCCTCCACCTCAAATG
1 TATCCTCCACCTCAAATG
7487991 TATC
1 TATC
7487995 AAGAACAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
18 21 0.55
21 17 0.45
ACGTcount: A:0.28, C:0.39, G:0.03, T:0.30
Consensus pattern (18 bp):
TATCCTCCACCTCAAATG
Found at i:7489601 original size:15 final size:14
Alignment explanation
Indices: 7489582--7489615 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
7489572 TTATTTGGTT
7489582 TTTTTTATATTTTA
1 TTTTTTATATTTTA
*
7489596 TATTTTTTTATTTTA
1 T-TTTTTATATTTTA
7489611 TTTTT
1 TTTTT
7489616 GAAAAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTTTTATATTTTA
Found at i:7494673 original size:2 final size:2
Alignment explanation
Indices: 7494666--7494690 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7494656 ATTCCTCCTC
7494666 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7494691 AGTTTTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7495865 original size:37 final size:37
Alignment explanation
Indices: 7495797--7495872 Score: 98
Period size: 37 Copynumber: 2.1 Consensus size: 37
7495787 ATAACATCCT
* * ** * *
7495797 TCATTATGATTAATTTCATCATGTCTCTAGTGGGTGA
1 TCATTAAGATTAATTTCACCATACCTATAGTGGCTGA
7495834 TCATTAAGATTAATTTCACCATACCTATAGTGGCTGA
1 TCATTAAGATTAATTTCACCATACCTATAGTGGCTGA
7495871 TC
1 TC
7495873 GGGCCTTCCA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (37 bp):
TCATTAAGATTAATTTCACCATACCTATAGTGGCTGA
Found at i:7495962 original size:2 final size:2
Alignment explanation
Indices: 7495957--7495987 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7495947 TTTTTTTGTT
7495957 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7495988 TCTAAAGTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7496160 original size:15 final size:16
Alignment explanation
Indices: 7496137--7496169 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
7496127 TTGAAGTATT
*
7496137 TTTATAATTT-AATTA
1 TTTAAAATTTCAATTA
7496152 TTTAAAATTTCAATTA
1 TTTAAAATTTCAATTA
7496168 TT
1 TT
7496170 ATTTCAATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (16 bp):
TTTAAAATTTCAATTA
Found at i:7496269 original size:27 final size:27
Alignment explanation
Indices: 7496238--7496294 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
7496228 ATATTAACAA
7496238 TAATTGAAGTAAATTCTAATTAATTAT
1 TAATTGAAGTAAATTCTAATTAATTAT
7496265 TAATTGAAGTAAATTCTAATTAATTAT
1 TAATTGAAGTAAATTCTAATTAATTAT
7496292 TAA
1 TAA
7496295 CTCATAAATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.46, C:0.04, G:0.07, T:0.44
Consensus pattern (27 bp):
TAATTGAAGTAAATTCTAATTAATTAT
Found at i:7497581 original size:69 final size:70
Alignment explanation
Indices: 7497505--7497646 Score: 268
Period size: 70 Copynumber: 2.0 Consensus size: 70
7497495 ATTAATAAAT
*
7497505 TAATTCTTATTTTAATTT-AAAAATAAAATAGATATGCTATTCATGTTGCATAGGCTTATAGAAT
1 TAATTCTTATTTTAATTTAAAAAATAAAATAGATATGCTATTCATGTTGCATAAGCTTATAGAAT
7497569 TAGTA
66 TAGTA
7497574 TAATTCTTATTTTAATTTAAAAAATAAAATAGATATGCTATTCATGTTGCATAAGCTTATAGAAT
1 TAATTCTTATTTTAATTTAAAAAATAAAATAGATATGCTATTCATGTTGCATAAGCTTATAGAAT
7497639 TAGTA
66 TAGTA
7497644 TAA
1 TAA
7497647 CATATTTGAA
Statistics
Matches: 71, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
69 18 0.25
70 53 0.75
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.42
Consensus pattern (70 bp):
TAATTCTTATTTTAATTTAAAAAATAAAATAGATATGCTATTCATGTTGCATAAGCTTATAGAAT
TAGTA
Found at i:7498200 original size:30 final size:30
Alignment explanation
Indices: 7498176--7498287 Score: 81
Period size: 29 Copynumber: 3.7 Consensus size: 30
7498166 TATTTAGATA
*
7498176 AAAATAAAATTTTAAAAATTTATTTGAATAC
1 AAAATAAAA-GTTAAAAATTTATTTGAATAC
* * *
7498207 AAATTAAAAGTTAAAGATTTATTTTG-GTAC
1 AAAATAAAAGTTAAAAATTTA-TTTGAATAC
* * *
7498237 -AAATCAAAGATTAAAAGTTTATTT-AAGTGC
1 AAAATAAAAG-TTAAAAATTTATTTGAA-TAC
7498267 --AATAAAAGTATAAAAATTTAT
1 AAAATAAAAGT-TAAAAATTTAT
7498288 CTAAATAAAA
Statistics
Matches: 64, Mismatches: 12, Indels: 12
0.73 0.14 0.14
Matches are distributed among these distances:
28 1 0.02
29 27 0.42
30 24 0.38
31 12 0.19
ACGTcount: A:0.51, C:0.04, G:0.09, T:0.37
Consensus pattern (30 bp):
AAAATAAAAGTTAAAAATTTATTTGAATAC
Found at i:7498754 original size:15 final size:14
Alignment explanation
Indices: 7498711--7498755 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 14
7498701 ATTCAGTTTA
7498711 ATTTATTAATTTATT
1 ATTT-TTAATTTATT
*
7498726 ATTTTTATTTTTATT
1 ATTTTTA-ATTTATT
7498741 ATTTTTAATATTATT
1 ATTTTTAAT-TTATT
7498756 TTAATATCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 4 0.15
15 22 0.85
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (14 bp):
ATTTTTAATTTATT
Found at i:7498759 original size:11 final size:12
Alignment explanation
Indices: 7498737--7498778 Score: 61
Period size: 11 Copynumber: 3.7 Consensus size: 12
7498727 TTTTTATTTT
7498737 TATTATTTTTAA
1 TATTATTTTTAA
7498749 TATTA-TTTTAA
1 TATTATTTTTAA
*
7498760 TATCATTTTTAA
1 TATTATTTTTAA
7498772 TA-TATTT
1 TATTATTT
7498779 AAATAAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
11 14 0.52
12 13 0.48
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (12 bp):
TATTATTTTTAA
Found at i:7498771 original size:23 final size:22
Alignment explanation
Indices: 7498741--7498783 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
7498731 TATTTTTATT
*
7498741 ATTTTTAATATTATTTTAATATC
1 ATTTTTAATA-TATTTAAATATC
7498764 ATTTTTAATATATTTAAATA
1 ATTTTTAATATATTTAAATA
7498784 AATTTAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (22 bp):
ATTTTTAATATATTTAAATATC
Found at i:7499692 original size:34 final size:32
Alignment explanation
Indices: 7499654--7499767 Score: 102
Period size: 34 Copynumber: 3.4 Consensus size: 32
7499644 ATTATTTTGT
* *
7499654 ATTCTCAAAAATCTATTTCAGATAATACATAATA
1 ATTCTCGAAAATCTATTTCA-AGAATACA-AATA
* *
7499688 ATTCTTGAAAATTTATTTCTAAGAATACAATATA
1 ATTCTCGAAAATCTATTTC-AAGAATACAA-ATA
* *
7499722 ATTTTCGAAAATCAATCTTCAAGAATACAAAATA
1 ATTCTCGAAAATCTAT-TTCAAGAATAC-AAATA
* *
7499756 ATTTTGGAAAAT
1 ATTCTCGAAAAT
7499768 TTTTATATTT
Statistics
Matches: 67, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
33 1 0.01
34 60 0.90
35 6 0.09
ACGTcount: A:0.46, C:0.11, G:0.06, T:0.36
Consensus pattern (32 bp):
ATTCTCGAAAATCTATTTCAAGAATACAAATA
Found at i:7502922 original size:19 final size:19
Alignment explanation
Indices: 7502900--7502951 Score: 77
Period size: 19 Copynumber: 2.7 Consensus size: 19
7502890 ACATAAACAT
7502900 ATAAAATCAGTATGTAAAA
1 ATAAAATCAGTATGTAAAA
* *
7502919 ATAAAATCAATATGTTAAA
1 ATAAAATCAGTATGTAAAA
*
7502938 ATCAAATCAGTATG
1 ATAAAATCAGTATG
7502952 AACATAAATC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.54, C:0.08, G:0.10, T:0.29
Consensus pattern (19 bp):
ATAAAATCAGTATGTAAAA
Found at i:7505749 original size:20 final size:20
Alignment explanation
Indices: 7505711--7505749 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7505701 CAAAAATGAA
*
7505711 TTTTTGAAAAATTTAAAGCC
1 TTTTTGAAAAATATAAAGCC
7505731 TTTTTG-AAAATATAGAAGC
1 TTTTTGAAAAATATA-AAGC
7505750 TAACCTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.41, C:0.08, G:0.13, T:0.38
Consensus pattern (20 bp):
TTTTTGAAAAATATAAAGCC
Found at i:7505871 original size:17 final size:18
Alignment explanation
Indices: 7505849--7505883 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
7505839 TGTTACTTTT
7505849 AATTCCC-AAATCTAATG
1 AATTCCCAAAATCTAATG
7505866 AATTCCCAAAATCTAATG
1 AATTCCCAAAATCTAATG
7505884 GAACGAGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.43, C:0.23, G:0.06, T:0.29
Consensus pattern (18 bp):
AATTCCCAAAATCTAATG
Found at i:7506184 original size:4 final size:4
Alignment explanation
Indices: 7506175--7506199 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
7506165 CATTATTTCC
7506175 ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA A
7506200 AAGAAAACTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:7508070 original size:2 final size:2
Alignment explanation
Indices: 7508063--7508101 Score: 53
Period size: 2 Copynumber: 19.5 Consensus size: 2
7508053 AGCTATCCTT
*
7508063 TA TA TA TA TA TA TA TA TA TA TA -A GTA TG TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA T
7508102 GTACGTATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
1 1 0.03
2 31 0.94
3 1 0.03
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7508096 original size:20 final size:20
Alignment explanation
Indices: 7508071--7508113 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
7508061 TTTATATATA
7508071 TATATATATATATAAGTATG
1 TATATATATATATAAGTATG
* *
7508091 TATATATATATGTACGTATG
1 TATATATATATATAAGTATG
7508111 TAT
1 TAT
7508114 TGTATGTATG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.47
Consensus pattern (20 bp):
TATATATATATATAAGTATG
Found at i:7512564 original size:2 final size:2
Alignment explanation
Indices: 7512555--7512588 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
7512545 CTTATATACT
7512555 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7512589 GAAGATCTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 28 0.93
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:7513308 original size:26 final size:26
Alignment explanation
Indices: 7513271--7513322 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
7513261 GTTTTTATTC
* *
7513271 TTGTTTTTATTGTATATAAAAAAATA
1 TTGTTTTCATTGCATATAAAAAAATA
* *
7513297 TTGTTTTCATTGCATATGAGAAAATA
1 TTGTTTTCATTGCATATAAAAAAATA
7513323 AATATTCGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.38, C:0.04, G:0.12, T:0.46
Consensus pattern (26 bp):
TTGTTTTCATTGCATATAAAAAAATA
Found at i:7513983 original size:24 final size:26
Alignment explanation
Indices: 7513924--7513977 Score: 72
Period size: 29 Copynumber: 1.9 Consensus size: 26
7513914 AAATCTACAC
7513924 AAAAGAATTGGATTTTATGATGAAGTG
1 AAAA-AATTGGATTTTATGATGAAGTG
7513951 AAAAAAAAATTGGATTTTATGATGAAG
1 ---AAAAAATTGGATTTTATGATGAAG
7513978 GCAAAACATG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
29 20 0.83
30 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.22, T:0.31
Consensus pattern (26 bp):
AAAAAATTGGATTTTATGATGAAGTG
Found at i:7515138 original size:18 final size:18
Alignment explanation
Indices: 7515094--7515144 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
7515084 AAAATGAAAC
7515094 ATTTTAAAAAAAATTATAA
1 ATTTT-AAAAAAATTATAA
*** *
7515113 AAAATAAAAAAATTATGA
1 ATTTTAAAAAAATTATAA
7515131 ATTTTAAAAAAATT
1 ATTTTAAAAAAATT
7515145 CAAAAAATCT
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
18 23 0.92
19 2 0.08
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (18 bp):
ATTTTAAAAAAATTATAA
Found at i:7515293 original size:18 final size:19
Alignment explanation
Indices: 7515272--7515309 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
7515262 AGACTGAAAA
7515272 TTAAAAAAAT-AAAAAATT
1 TTAAAAAAATCAAAAAATT
*
7515290 TTAAAAAAATCTAAAAATT
1 TTAAAAAAATCAAAAAATT
7515309 T
1 T
7515310 AAGAAATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (19 bp):
TTAAAAAAATCAAAAAATT
Found at i:7515310 original size:18 final size:17
Alignment explanation
Indices: 7515268--7515311 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
7515258 TAAAAGACTG
7515268 AAAA-TTAAAAAAATAA
1 AAAATTTAAAAAAATAA
*
7515284 AAAATTTTAAAAAAATCTA
1 AAAA-TTTAAAAAAAT-AA
7515303 AAAATTTAA
1 AAAATTTAA
7515312 GAAATTTCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 4 0.17
18 15 0.62
19 5 0.21
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.27
Consensus pattern (17 bp):
AAAATTTAAAAAAATAA
Found at i:7515337 original size:9 final size:9
Alignment explanation
Indices: 7515283--7515357 Score: 55
Period size: 9 Copynumber: 8.0 Consensus size: 9
7515273 TAAAAAAATA
7515283 AAAAATTTT
1 AAAAATTTT
* *
7515292 AAAAAAATCT
1 -AAAAATTTT
7515302 AAAAA-TTT
1 AAAAATTTT
7515310 AAGAAATTTCT
1 AA-AAATTT-T
*
7515321 AACCAATTTT
1 AA-AAATTTT
7515331 AAAAATTTT
1 AAAAATTTT
*
7515340 AGAAAA-CTT
1 A-AAAATTTT
7515349 AAAAATTTT
1 AAAAATTTT
7515358 CAATAAATAT
Statistics
Matches: 52, Mismatches: 8, Indels: 11
0.73 0.11 0.15
Matches are distributed among these distances:
8 8 0.15
9 20 0.38
10 16 0.31
11 8 0.15
ACGTcount: A:0.55, C:0.07, G:0.03, T:0.36
Consensus pattern (9 bp):
AAAAATTTT
Found at i:7515370 original size:19 final size:19
Alignment explanation
Indices: 7515330--7515392 Score: 60
Period size: 18 Copynumber: 3.3 Consensus size: 19
7515320 TAACCAATTT
*
7515330 TAAAAATTTTAGA-AAACT-
1 TAAAAATTTTA-ATAAAGTA
7515348 TAAAAATTTTCAATAAA-TA
1 TAAAAATTTT-AATAAAGTA
*
7515367 TAAACATTTTAATAAAGTTA
1 TAAAAATTTTAATAAAG-TA
7515387 TAAAAA
1 TAAAAA
7515393 ATTAGGGAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
18 18 0.47
19 13 0.34
20 7 0.18
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (19 bp):
TAAAAATTTTAATAAAGTA
Found at i:7515426 original size:19 final size:20
Alignment explanation
Indices: 7515404--7515458 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 20
7515394 TTAGGGAAAT
*
7515404 ATAAAAAT-TAAAAATTTTA
1 ATAAAAATATAAAAATTTCA
** *
7515423 ATAAAAATCCAAAAAATTCA
1 ATAAAAATATAAAAATTTCA
7515443 A-AAAAATATAAAAATT
1 ATAAAAATATAAAAATT
7515459 AAAAAAAACT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
19 20 0.69
20 9 0.31
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.27
Consensus pattern (20 bp):
ATAAAAATATAAAAATTTCA
Found at i:7515465 original size:9 final size:9
Alignment explanation
Indices: 7515406--7515465 Score: 50
Period size: 9 Copynumber: 6.6 Consensus size: 9
7515396 AGGGAAATAT
7515406 AAAAATTAA
1 AAAAATTAA
**
7515415 AAATTTTAA
1 AAAAATTAA
**
7515424 TAAAAATCCA
1 -AAAAATTAA
7515434 AAAAATTCAA
1 AAAAATT-AA
*
7515444 AAAAA-TAT
1 AAAAATTAA
7515452 AAAAATTAA
1 AAAAATTAA
7515461 AAAAA
1 AAAAA
7515466 ACTTAAGATT
Statistics
Matches: 38, Mismatches: 10, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
8 6 0.16
9 21 0.55
10 11 0.29
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (9 bp):
AAAAATTAA
Found at i:7515509 original size:16 final size:16
Alignment explanation
Indices: 7515468--7515514 Score: 58
Period size: 18 Copynumber: 2.8 Consensus size: 16
7515458 TAAAAAAAAC
* *
7515468 TTAAGATTTTTATTTT
1 TTAAAATTTTTAATTT
7515484 TTAGAAAATTTTTAATTT
1 TT--AAAATTTTTAATTT
7515502 TTAAAATTTTTAA
1 TTAAAATTTTTAA
7515515 AGAATGTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 13 0.48
18 14 0.52
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (16 bp):
TTAAAATTTTTAATTT
Found at i:7518051 original size:12 final size:12
Alignment explanation
Indices: 7518034--7518061 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
7518024 ATAATATCAG
7518034 AAAAAAATTTTA
1 AAAAAAATTTTA
7518046 AAAAAAATTTTA
1 AAAAAAATTTTA
7518058 AAAA
1 AAAA
7518062 TTTTGAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (12 bp):
AAAAAAATTTTA
Found at i:7518072 original size:12 final size:12
Alignment explanation
Indices: 7518033--7518072 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
7518023 GATAATATCA
7518033 GAAAAAAATTTT
1 GAAAAAAATTTT
*
7518045 AAAAAAAATTTT
1 GAAAAAAATTTT
7518057 ---AAAAATTTT
1 GAAAAAAATTTT
7518066 GAAAAAA
1 GAAAAAA
7518073 TCTAAAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
9 9 0.38
12 15 0.62
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (12 bp):
GAAAAAAATTTT
Found at i:7518353 original size:7 final size:7
Alignment explanation
Indices: 7518336--7518374 Score: 69
Period size: 7 Copynumber: 5.4 Consensus size: 7
7518326 ACAAGACTAA
7518336 AAAATATT
1 AAAA-ATT
7518344 AAAAATT
1 AAAAATT
7518351 AAAAATT
1 AAAAATT
7518358 AAAAATT
1 AAAAATT
7518365 AAAAATT
1 AAAAATT
7518372 AAA
1 AAA
7518375 GAAATGAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
7 27 0.87
8 4 0.13
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
AAAAATT
Found at i:7518536 original size:38 final size:37
Alignment explanation
Indices: 7518494--7518582 Score: 99
Period size: 38 Copynumber: 2.4 Consensus size: 37
7518484 ACAAAATTTT
7518494 AAAAAATCTAAAATATTTTTAAAAAATAAAAAAAATAA
1 AAAAAATCTAAAATATTTTTAAAAAATAAAAAAAA-AA
* * *** *
7518532 AAAAATAT-TGAAATATTTTTAAAAATTCCCAAAAAAG
1 AAAAA-ATCTAAAATATTTTTAAAAAATAAAAAAAAAA
7518569 AAAAAATCTAAAAT
1 AAAAAATCTAAAAT
7518583 TGAAAAAAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
36 2 0.05
37 11 0.26
38 27 0.64
39 2 0.05
ACGTcount: A:0.65, C:0.06, G:0.02, T:0.27
Consensus pattern (37 bp):
AAAAAATCTAAAATATTTTTAAAAAATAAAAAAAAAA
Found at i:7518919 original size:19 final size:18
Alignment explanation
Indices: 7518897--7518958 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 18
7518887 ATTTTTTTCG
7518897 ATTTTTCAATTTTTATAAA
1 ATTTTT-AATTTTTATAAA
*
7518916 ATTTTTAGTTTTTATGAAA
1 ATTTTTAATTTTTAT-AAA
* **
7518935 TTTTTTATATTTTTGGAAA
1 ATTTTTA-ATTTTTATAAA
7518954 ATTTT
1 ATTTT
7518959 AGGATTTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
18 8 0.23
19 22 0.63
20 5 0.14
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61
Consensus pattern (18 bp):
ATTTTTAATTTTTATAAA
Found at i:7518920 original size:18 final size:18
Alignment explanation
Indices: 7518899--7518938 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7518889 TTTTTTCGAT
7518899 TTTTCAATTTTTATAAAA
1 TTTTCAATTTTTATAAAA
* * *
7518917 TTTTTAGTTTTTATGAAA
1 TTTTCAATTTTTATAAAA
7518935 TTTT
1 TTTT
7518939 TTATATTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.62
Consensus pattern (18 bp):
TTTTCAATTTTTATAAAA
Found at i:7519002 original size:24 final size:24
Alignment explanation
Indices: 7518971--7519024 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
7518961 GATTTTTTTG
7518971 TTTTTTTAA-AAATCTT-ACATATAT
1 TTTTTTTAAGAAAT-TTCA-ATATAT
*
7518995 TTTTTTTAAGAAATTTCAATTTAT
1 TTTTTTTAAGAAATTTCAATATAT
7519019 TTTTTT
1 TTTTTT
7519025 ATTTTTATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 22 0.81
25 5 0.19
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (24 bp):
TTTTTTTAAGAAATTTCAATATAT
Found at i:7519124 original size:21 final size:22
Alignment explanation
Indices: 7519069--7519125 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
7519059 ATTCTTACTA
* * *
7519069 TTTTTCAATATTTAGTTTTTTTT
1 TTTTTCAAAATTT-GCTTTTGTT
*
7519092 TTTTTCAGAATTTGCTTTTGTT
1 TTTTTCAAAATTTGCTTTTGTT
7519114 TTTTT-AAAATTT
1 TTTTTCAAAATTT
7519126 TTCATATTTG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
21 6 0.21
22 12 0.41
23 11 0.38
ACGTcount: A:0.19, C:0.05, G:0.07, T:0.68
Consensus pattern (22 bp):
TTTTTCAAAATTTGCTTTTGTT
Found at i:7519186 original size:10 final size:9
Alignment explanation
Indices: 7519156--7519236 Score: 54
Period size: 9 Copynumber: 8.4 Consensus size: 9
7519146 ATTTTTGGAA
7519156 TTTTAAAAT
1 TTTTAAAAT
* **
7519165 TTTTTATGT
1 TTTTAAAAT
7519174 TTTTGAAAAT
1 TTTT-AAAAT
**
7519184 TTTGGGAAAT
1 TTT-TAAAAT
7519194 TTTTAAAAACT
1 TTTT-AAAA-T
*
7519205 TTTTCAAATT
1 TTTT-AAAAT
7519215 TTTTAAAAT
1 TTTTAAAAT
*
7519224 TTTTAGAAT
1 TTTTAAAAT
7519233 TTTT
1 TTTT
7519237 TGTTTTCAAG
Statistics
Matches: 54, Mismatches: 14, Indels: 8
0.71 0.18 0.11
Matches are distributed among these distances:
9 26 0.48
10 20 0.37
11 8 0.15
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.57
Consensus pattern (9 bp):
TTTTAAAAT
Found at i:7519227 original size:11 final size:10
Alignment explanation
Indices: 7519156--7519237 Score: 60
Period size: 10 Copynumber: 8.4 Consensus size: 10
7519146 ATTTTTGGAA
7519156 TTTTAAAATT
1 TTTTAAAATT
**
7519166 TTTT-ATGTT
1 TTTTAAAATT
*
7519175 TTTGAAAATT
1 TTTTAAAATT
***
7519185 TTGGGAAATT
1 TTTTAAAATT
* *
7519195 TTTAAAAACT
1 TTTTAAAATT
*
7519205 TTTTCAAATT
1 TTTTAAAATT
7519215 TTTTAAAA-T
1 TTTTAAAATT
*
7519224 TTTTAGAATT
1 TTTTAAAATT
7519234 TTTT
1 TTTT
7519238 GTTTTCAAGA
Statistics
Matches: 54, Mismatches: 16, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
9 14 0.26
10 40 0.74
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.57
Consensus pattern (10 bp):
TTTTAAAATT
Found at i:7519227 original size:20 final size:19
Alignment explanation
Indices: 7519156--7519237 Score: 67
Period size: 20 Copynumber: 4.2 Consensus size: 19
7519146 ATTTTTGGAA
**
7519156 TTTTAAAATTTTTTATGTT
1 TTTTAAAATTTTTTAAATT
* **
7519175 TTTGAAAATTTTGGGAAATT
1 TTTTAAAATTTT-TTAAATT
* *
7519195 TTTAAAAACTTTTTCAAATT
1 TTTTAAAA-TTTTTTAAATT
7519215 TTTTAAAA-TTTTTAGAATT
1 TTTTAAAATTTTTTA-AATT
7519234 TTTT
1 TTTT
7519238 GTTTTCAAGA
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
18 5 0.10
19 19 0.38
20 22 0.44
21 4 0.08
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.57
Consensus pattern (19 bp):
TTTTAAAATTTTTTAAATT
Found at i:7519344 original size:11 final size:11
Alignment explanation
Indices: 7519328--7519366 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
7519318 AGGATATCAA
7519328 TTAAAAAATTT
1 TTAAAAAATTT
7519339 TTAAAAAATCTT
1 TTAAAAAAT-TT
* *
7519351 TTAGAAAACTT
1 TTAAAAAATTT
7519362 TTAAA
1 TTAAA
7519367 TTTTTTATGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 15 0.62
12 9 0.38
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (11 bp):
TTAAAAAATTT
Found at i:7524748 original size:12 final size:12
Alignment explanation
Indices: 7524692--7524748 Score: 69
Period size: 12 Copynumber: 4.8 Consensus size: 12
7524682 AAATACACCC
* *
7524692 TTCAGCAAACTA
1 TTCAGCATACCA
*
7524704 TTCAGCATATCA
1 TTCAGCATACCA
*
7524716 TTCAGCAAACCA
1 TTCAGCATACCA
*
7524728 TTCAACATACCA
1 TTCAGCATACCA
7524740 TTCAGCATA
1 TTCAGCATA
7524749 AGATTCAGTC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 37 1.00
ACGTcount: A:0.39, C:0.28, G:0.07, T:0.26
Consensus pattern (12 bp):
TTCAGCATACCA
Found at i:7524754 original size:12 final size:12
Alignment explanation
Indices: 7524692--7524756 Score: 62
Period size: 12 Copynumber: 5.4 Consensus size: 12
7524682 AAATACACCC
7524692 TTCAGCA-AACTA
1 TTCAGCATAAC-A
*
7524704 TTCAGCATATCA
1 TTCAGCATAACA
7524716 TTCAGCA-AACCA
1 TTCAGCATAA-CA
* *
7524728 TTCAACATACCA
1 TTCAGCATAACA
*
7524740 TTCAGCATAAGA
1 TTCAGCATAACA
7524752 TTCAG
1 TTCAG
7524757 TCCCTCAATA
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
11 1 0.02
12 39 0.91
13 3 0.07
ACGTcount: A:0.38, C:0.26, G:0.09, T:0.26
Consensus pattern (12 bp):
TTCAGCATAACA
Found at i:7524755 original size:24 final size:24
Alignment explanation
Indices: 7524692--7524746 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
7524682 AAATACACCC
* * *
7524692 TTCAGCAAACTATTCAGCATATCA
1 TTCAGCAAACCATTCAACATACCA
7524716 TTCAGCAAACCATTCAACATACCA
1 TTCAGCAAACCATTCAACATACCA
7524740 TTCAGCA
1 TTCAGCA
7524747 TAAGATTCAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.38, C:0.29, G:0.07, T:0.25
Consensus pattern (24 bp):
TTCAGCAAACCATTCAACATACCA
Found at i:7525639 original size:187 final size:186
Alignment explanation
Indices: 7525446--7525951 Score: 483
Period size: 187 Copynumber: 2.7 Consensus size: 186
7525436 TATAACAAAT
* * * *
7525446 TATTGAAGGTATTTTATATTAAAAGACGCTTTTAATAATCCCAAAATTTTTTTAAAGAAAATTAT
1 TATTGAAGG-ATTTTATACTAGAAGACGCTTTTAATAATCCTAAAATTTTTTAAAAGAAAATTAT
* * *
7525511 TGAAGGTGGTTGTTCT-AAAAAATCACCTTCAATAATTATATACAAATATTAAAACAAATTAGTG
65 TGAAGGTGGTTGTTATAAAAAAAT-ACCTTCAATAATTATATACAAATATTAAAAAAAATTATTG
* * *
7525575 AAGGTATTT-TCCTAGAATAAATGCCTTCACTAACCT-TCTTTAAATTTGAGTA-CTCGTA
129 AAGGTATTTCT-CTAGAATAAACGCCTTCAATAA-CTGTCTTAAAATTTGAGTAGC-CGTA
** * * * * *
7525633 TATTGAAGGCGTTTAGCAGTAGAAGATGCCTTTAAT-ATTCTAAAATTTTTTAAAAGAAAA-TAT
1 TATTGAAGGATTTTA-TACTAGAAGACGCTTTTAATAATCCTAAAATTTTTTAAAAGAAAATTAT
* * * * *
7525696 ATGAAGGTAGTTTTTATAAAAAAATGCCTTCACTAATTATCTACAAA-ATTTAAAAAAAAATTAT
65 -TGAAGGTGGTTGTTATAAAAAAATACCTTCAATAATTATATACAAATA-TT-AAAAAAAATTAT
* * * ** * * *
7525760 TAAAGGTATTTCTCTGGAATATACGTTTTCAATAATTGTCTTAAAATTTGTGTAGCGGTA
127 TGAAGGTATTTCTCTAGAATAAACGCCTTCAATAACTGTCTTAAAATTTGAGTAGCCGTA
* *
7525820 TATTGAAGGCATTTTTTACTAGAAGAC-ATCTTTAATAATCCTAACAA-TTTTTAAAAGAAAATT
1 TATTGAAGG-ATTTTATACTAGAAGACGCT-TTTAATAATCCTAA-AATTTTTTAAAAGAAAATT
* * * * * **
7525883 ATTGAAGGCGTTTGTTATCAAAAAATACCTTCAATATTTATGTACAAAT-TTAAAAGGAATTATT
63 ATTGAAGGTGGTTGTTATAAAAAAATACCTTCAATAATTATATACAAATATTAAAAAAAATTATT
7525947 GAAGG
128 GAAGG
7525952 CGTTTCTTAG
Statistics
Matches: 255, Mismatches: 50, Indels: 29
0.76 0.15 0.09
Matches are distributed among these distances:
185 4 0.02
186 75 0.29
187 109 0.43
188 62 0.24
189 5 0.02
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (186 bp):
TATTGAAGGATTTTATACTAGAAGACGCTTTTAATAATCCTAAAATTTTTTAAAAGAAAATTATT
GAAGGTGGTTGTTATAAAAAAATACCTTCAATAATTATATACAAATATTAAAAAAAATTATTGAA
GGTATTTCTCTAGAATAAACGCCTTCAATAACTGTCTTAAAATTTGAGTAGCCGTA
Found at i:7525890 original size:62 final size:59
Alignment explanation
Indices: 7525820--7526023 Score: 144
Period size: 61 Copynumber: 3.3 Consensus size: 59
7525810 TGTAGCGGTA
*
7525820 TATTGAAGGCATTTTTTACTAGAAGACATCTTTAATAATCCTAACAATTTTTAAAAGAAAAT
1 TATTGAAGGCATTTCTTA-TAGAAGACA-CTTTAATAATCCTAACAATTTTTAAAAG-AAAT
* * * * * * * ** * * *
7525882 TATTGAAGGCGTTTGTTATCAAAAAATACCTTCAATATTTATGTACAA-ATTTAAAAGGAAT
1 TATTGAAGGCATTTCTTAT-AGAAGACA-CTTTAATAATCCT-AACAATTTTTAAAAGAAAT
* *
7525943 TATTGAAGGCGTTTCTTAGTAGAAGACACGTTTAATAATCC-AA-AATTTTTTAAAGGGAAAT
1 TATTGAAGGCATTTCTTA-TAGAAGACAC-TTTAATAATCCTAACAA-TTTTTAAA-AGAAAT
* *
7526004 TATTAAAGGCATTTATTATA
1 TATTGAAGGCATTTCTTATA
7526024 AAAAAACACC
Statistics
Matches: 107, Mismatches: 28, Indels: 16
0.71 0.19 0.11
Matches are distributed among these distances:
58 2 0.02
59 1 0.01
60 9 0.08
61 52 0.49
62 39 0.36
63 4 0.04
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (59 bp):
TATTGAAGGCATTTCTTATAGAAGACACTTTAATAATCCTAACAATTTTTAAAAGAAAT
Found at i:7526046 original size:122 final size:124
Alignment explanation
Indices: 7525820--7526079 Score: 330
Period size: 123 Copynumber: 2.1 Consensus size: 124
7525810 TGTAGCGGTA
*
7525820 TATTGAAGGCATTTTTTACTAGAAGACATCTTTAATAATCCTAACAATTTTTAAAAGAAAATTAT
1 TATTGAAGGCATTTCTTACTAGAAGACATCTTTAATAATCCTAACAATTTTTAAAAGAAAATTAT
* * * * * * * *
7525885 TGAAGGCGTTTGTTATCAAAAAATACCTTCAATATTTATGTAC-AAATTTAAAAGGAAT
66 TAAAGGCATTTATTATAAAAAAACACCTTCAATAATTATGTACTAAACTTAAAAGAAAT
* * * *
7525943 TATTGAAGGCGTTTCTTAGTAGAAGACA-CGTTTAATAATCC-AA-AATTTTTTAAAGGGAAATT
1 TATTGAAGGCATTTCTTACTAGAAGACATC-TTTAATAATCCTAACAA-TTTTTAAAAGAAAATT
*
7526005 ATTAAAGGCATTTATTATAAAAAAACACCTTCAGTAATTATGTACTAAACTTAAAAGAAAT
64 ATTAAAGGCATTTATTATAAAAAAACACCTTCAATAATTATGTACTAAACTTAAAAGAAAT
* *
7526066 TATTAAAGGTATTT
1 TATTGAAGGCATTT
7526080 TTCTGGAATA
Statistics
Matches: 117, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
121 2 0.02
122 55 0.47
123 60 0.51
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.36
Consensus pattern (124 bp):
TATTGAAGGCATTTCTTACTAGAAGACATCTTTAATAATCCTAACAATTTTTAAAAGAAAATTAT
TAAAGGCATTTATTATAAAAAAACACCTTCAATAATTATGTACTAAACTTAAAAGAAAT
Found at i:7526200 original size:309 final size:310
Alignment explanation
Indices: 7525633--7526255 Score: 744
Period size: 309 Copynumber: 2.0 Consensus size: 310
7525623 AGTACTCGTA
** * *
7525633 TATTGAAGGCGTTTAGCAGTAGAAGATGCCTTTAATATTCTAAAATTTTTTAAAAGAAAATATAT
1 TATTGAAGGCGTTTAGCAGTAGAAGACACCTTTAATAATCCAAAATTTTTTAAAAGAAAATATAT
* * ** *
7525698 GAAGGTAGTTTTTATAAAAAAATGCCTTCACTAATTATCTACAAAATTTAAAAAAAAATTATTAA
66 AAAGGCAGTTTTTATAAAAAAACACCTTCACTAATTATCTACAAAACTTAAAAAAAAATTATTAA
* * * **
7525763 AGGTATTTCTCTGGAATATACGTTTTCAATAATTGTCTTAAAATTTGTGTAGCGGTATATTGAAG
131 AGGTATTTCTCTGGAATATACCTTCTCAACAATTGTCTTAAAATTTAAGTAGCGGTATATTGAAG
* * * * *
7525828 GCATTTTTTACTAGAAGACATCTTTAATAATCCTAACAATTTTTAAAAGAAAATTATTGAAGGCG
196 ACATTTTTCACTAAAAGACACCTTTAATAATCCTAACAATTTTTAAAAGAAAAATATTGAAGGCG
* *
7525893 TTTGTTATCAAAAAATACCTTCAATATTTATGTAC-AAATTTAAAAGGAAT
261 TTTGTTATCAAAAAATACCTTCAATAATTATGTACAAAATTT-AAAGAAAT
*** * * *
7525943 TATTGAAGGCGTTTCTTAGTAGAAGACACGTTTAATAATCCAAAATTTTTTAAAGGGAAAT-TAT
1 TATTGAAGGCGTTTAGCAGTAGAAGACACCTTTAATAATCCAAAATTTTTTAAAAGAAAATATA-
* * * *
7526007 TAAAGGCA-TTTATTATAAAAAAACACCTTCAGTAATTATGTACTAAACTT-AAAAGAAATTATT
65 TAAAGGCAGTTT-TTATAAAAAAACACCTTCACTAATTATCTACAAAACTTAAAAAAAAATTATT
* *
7526070 AAAGGTATTTTTCTGGAATAAATACCTTCTCTAACCA-T-T-TTAAAATTTAAGTA-CTGGTATA
129 AAAGGTATTTCTCTGGAAT--ATACCTTCTC-AACAATTGTCTTAAAATTTAAGTAGC-GGTATA
* * * * *
7526131 TTGAATACGTTTTTCAGTAAAAGATACCTTTAATAATCTTAA-AAGTTTTT-AAAGAAAAATATA
190 TTGAAGACATTTTTCACTAAAAGACACCTTTAATAATCCTAACAA-TTTTTAAAAGAAAAATAT-
*
7526194 TGAAGGCGTTTGTTTTCAAAAAATACCTTCAATAATTATGTACAAAATTTAAAGAAAT
253 TGAAGGCGTTTGTTATCAAAAAATACCTTCAATAATTATGTACAAAATTTAAAGAAAT
7526252 TATT
1 TATT
7526256 AAAAGTATTT
Statistics
Matches: 265, Mismatches: 39, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
308 14 0.05
309 143 0.54
310 96 0.36
311 9 0.03
312 3 0.01
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (310 bp):
TATTGAAGGCGTTTAGCAGTAGAAGACACCTTTAATAATCCAAAATTTTTTAAAAGAAAATATAT
AAAGGCAGTTTTTATAAAAAAACACCTTCACTAATTATCTACAAAACTTAAAAAAAAATTATTAA
AGGTATTTCTCTGGAATATACCTTCTCAACAATTGTCTTAAAATTTAAGTAGCGGTATATTGAAG
ACATTTTTCACTAAAAGACACCTTTAATAATCCTAACAATTTTTAAAAGAAAAATATTGAAGGCG
TTTGTTATCAAAAAATACCTTCAATAATTATGTACAAAATTTAAAGAAAT
Found at i:7526465 original size:179 final size:178
Alignment explanation
Indices: 7525958--7526473 Score: 531
Period size: 179 Copynumber: 2.8 Consensus size: 178
7525948 AAGGCGTTTC
* * * *
7525958 TTAGTAGAAGACACGTTTAATAATCC-AAAATTTTTTAAAGGGAAATTATTAAAGGCATTTATTA
1 TTAGTAGAAGACAC-TTTAATAATCCTAAAAGTTTTTAAA-GGAAATTATTGAAGGCGTTTGTTA
* *
7526022 TAAAAAAACACCTTCAGTAATTATGTAC-TAAACTTAAAAGAAATTATTAAAGGTATTTTTCTGG
64 TAAAAAAATACCTTCAATAATTATGTACATAAACTT-AAAGAAATTATTAAAGGTATTTTTCT-G
* * * * *
7526086 AATAAATACCTTCTCTAACCATTTTAAAATTTAAGTACTGGTATATTGAATACGTTTT
127 AATAAATACCTTCACTAACC---GT---ATTTAAGTACTAGTATATTCAATACATTTT
* * * * * * *
7526144 TCAGTAAAAGATACCTTTAATAATCTTAAAAGTTTTTAAAGAAAAATATATGAAGGCGTTTGTTT
1 TTAGTAGAAGACA-CTTTAATAATCCTAAAAGTTTTTAAAGGAAATTAT-TGAAGGCGTTTGTTA
* * *
7526209 TCAAAAAATACCTTCAATAATTATGTACA-AAATTTAAAGAAATTATTAAAAGTATTTTTCTGAA
64 TAAAAAAATACCTTCAATAATTATGTACATAAACTTAAAGAAATTATTAAAGGTATTTTTCTG-A
* * *
7526273 ATAAACACCTTCACTAACCGT-TTTGAGTACTAGTATATTCAATGCATTTT
128 ATAAATACCTTCACTAACCGTATTTAAGTACTAGTATATTCAATACATTTT
* *
7526323 TTAGTAGAAGACGTCTTTAATAATCCTAAAA-TTTTTAGAAGGAAATTATTGAAGGCGGTTGTTA
1 TTAGTAGAAGAC-ACTTTAATAATCCTAAAAGTTTTTA-AAGGAAATTATTGAAGGCGTTTGTTA
* * * * * * *
7526387 TAAAAAAATACCTTTAATAATTATGCACATAAA-TTAAATGTAATCAGTGAAGGTGTTTTTCTAG
64 TAAAAAAATACCTTCAATAATTATGTACATAAACTTAAA-GAAATTATTAAAGGTATTTTTCT-G
*
7526451 AATAAATGCCTTCACTAACCGTA
127 AATAAATACCTTCACTAACCGTA
7526474 AAACATTTTA
Statistics
Matches: 275, Mismatches: 44, Indels: 28
0.79 0.13 0.08
Matches are distributed among these distances:
178 50 0.18
179 98 0.36
180 1 0.00
183 1 0.00
185 1 0.00
186 70 0.25
187 54 0.20
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.36
Consensus pattern (178 bp):
TTAGTAGAAGACACTTTAATAATCCTAAAAGTTTTTAAAGGAAATTATTGAAGGCGTTTGTTATA
AAAAAATACCTTCAATAATTATGTACATAAACTTAAAGAAATTATTAAAGGTATTTTTCTGAATA
AATACCTTCACTAACCGTATTTAAGTACTAGTATATTCAATACATTTT
Found at i:7535388 original size:11 final size:11
Alignment explanation
Indices: 7535372--7535397 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7535362 GTGTTAAGTG
7535372 TTAAGTTAGTC
1 TTAAGTTAGTC
7535383 TTAAGTTAGTC
1 TTAAGTTAGTC
7535394 TTAA
1 TTAA
7535398 TTGTTACATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (11 bp):
TTAAGTTAGTC
Found at i:7537941 original size:87 final size:87
Alignment explanation
Indices: 7537795--7537974 Score: 351
Period size: 87 Copynumber: 2.1 Consensus size: 87
7537785 ACGTAATTTA
7537795 TGCATTATTGGTCATCAAATTGCTAAAGGCTAAAAAGTTTACATTTTAACATTCCACGTAATCAT
1 TGCATTATTGGTCATCAAATTGCTAAAGGCTAAAAAGTTTACATTTTAACATTCCACGTAATCAT
7537860 TTTATGTTTAGCAGTAAATTCG
66 TTTATGTTTAGCAGTAAATTCG
*
7537882 TGCATTATTGGTCATCAAATTGCTAAAGGCTAAAAAGTTTACATTTTAACATTTCACGTAATCAT
1 TGCATTATTGGTCATCAAATTGCTAAAGGCTAAAAAGTTTACATTTTAACATTCCACGTAATCAT
7537947 TTTATGTTTAGCAGTAAATTCG
66 TTTATGTTTAGCAGTAAATTCG
7537969 TGCATT
1 TGCATT
7537975 GTGTCACGTC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 92 1.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (87 bp):
TGCATTATTGGTCATCAAATTGCTAAAGGCTAAAAAGTTTACATTTTAACATTCCACGTAATCAT
TTTATGTTTAGCAGTAAATTCG
Found at i:7542354 original size:23 final size:22
Alignment explanation
Indices: 7542313--7542359 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
7542303 TTTTCAATAA
*
7542313 AAAATATTAATTTTAATTAATTT
1 AAAATAATAATTTTAATT-ATTT
7542336 AAAATAATAA-TTTATATTATTT
1 AAAATAATAATTTTA-ATTATTT
7542358 AA
1 AA
7542360 TAAAAAATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 10 0.45
23 12 0.55
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
AAAATAATAATTTTAATTATTT
Found at i:7544194 original size:37 final size:37
Alignment explanation
Indices: 7544083--7544195 Score: 181
Period size: 37 Copynumber: 3.1 Consensus size: 37
7544073 TTTGAATTAA
7544083 GATTACTTATGATCTTATATGATGAATGTTATACTTT
1 GATTACTTATGATCTTATATGATGAATGTTATACTTT
* * *
7544120 AATTATTTATGATTTTATATGATGAATGTTATACTTT
1 GATTACTTATGATCTTATATGATGAATGTTATACTTT
* *
7544157 GATTACTTATAATCTTATATGATGAATATTATACTTT
1 GATTACTTATGATCTTATATGATGAATGTTATACTTT
7544194 GA
1 GA
7544196 CTTTACTTTA
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.33, C:0.06, G:0.12, T:0.50
Consensus pattern (37 bp):
GATTACTTATGATCTTATATGATGAATGTTATACTTT
Found at i:7547166 original size:44 final size:44
Alignment explanation
Indices: 7547111--7547200 Score: 153
Period size: 44 Copynumber: 2.0 Consensus size: 44
7547101 AATCACATAA
*
7547111 GGATGCGATTGATAAGCAAGTTATCTACCTAATTTACTTATCAT
1 GGATGCAATTGATAAGCAAGTTATCTACCTAATTTACTTATCAT
* *
7547155 GGATGCAATTGATAAGTAAGTTATCTACTTAATTTACTTATCAT
1 GGATGCAATTGATAAGCAAGTTATCTACCTAATTTACTTATCAT
7547199 GG
1 GG
7547201 CTTGTTGAGA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (44 bp):
GGATGCAATTGATAAGCAAGTTATCTACCTAATTTACTTATCAT
Found at i:7550356 original size:21 final size:20
Alignment explanation
Indices: 7550332--7550407 Score: 66
Period size: 21 Copynumber: 3.6 Consensus size: 20
7550322 CAATTATTTT
*
7550332 CATAGTGCTATATATGGATGA
1 CATATTGCT-TATATGGATGA
*
7550353 CATATTACTTATA-GGAAATGA
1 CATATTGCTTATATGG--ATGA
*
7550374 CATATTGC-TATCGGTGGATGA
1 CATATTGCTTAT--ATGGATGA
7550395 CATATTGCTTATA
1 CATATTGCTTATA
7550408 GGAAATGATA
Statistics
Matches: 44, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
19 2 0.05
20 7 0.16
21 30 0.68
22 3 0.07
23 2 0.05
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.36
Consensus pattern (20 bp):
CATATTGCTTATATGGATGA
Found at i:7550415 original size:21 final size:21
Alignment explanation
Indices: 7550349--7550415 Score: 82
Period size: 21 Copynumber: 3.2 Consensus size: 21
7550339 CTATATATGG
*
7550349 ATGACATATTACTTATAGGAA
1 ATGACATATTGCTTATAGGAA
* **
7550370 ATGACATATTGC-TATCGGTGG
1 ATGACATATTGCTTATAGG-AA
7550391 ATGACATATTGCTTATAGGAA
1 ATGACATATTGCTTATAGGAA
7550412 ATGA
1 ATGA
7550416 TATACCCATG
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
20 5 0.14
21 27 0.73
22 5 0.14
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (21 bp):
ATGACATATTGCTTATAGGAA
Found at i:7551415 original size:17 final size:17
Alignment explanation
Indices: 7551393--7551428 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
7551383 TCAAAAAAGT
7551393 ATCTCGATTTGTCTTTA
1 ATCTCGATTTGTCTTTA
7551410 ATCTCGATTTGTCTTTA
1 ATCTCGATTTGTCTTTA
7551427 AT
1 AT
7551429 TGAATTAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (17 bp):
ATCTCGATTTGTCTTTA
Found at i:7563378 original size:58 final size:56
Alignment explanation
Indices: 7563289--7563398 Score: 134
Period size: 58 Copynumber: 1.9 Consensus size: 56
7563279 ACAGTAATTA
* * *
7563289 ATTATTTTTAAAAATTTATAATAAATTATTATTATATTTAATTTTTTAAAAAACTTTG
1 ATTATTTTTAAAAAATTATAATAAATAATTATTATATGT-A-TTTTTAAAAAACTTTG
*
7563347 ATTA-TTTTAAATAAATTATAAT-AATCAATTATTGTATGTATTTTTAAAAAAC
1 ATTATTTTTAAA-AAATTATAATAAAT-AATTATTATATGTATTTTTAAAAAAC
7563399 ATAATAATTA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
56 12 0.26
57 11 0.24
58 23 0.50
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (56 bp):
ATTATTTTTAAAAAATTATAATAAATAATTATTATATGTATTTTTAAAAAACTTTG
Found at i:7563405 original size:35 final size:35
Alignment explanation
Indices: 7563364--7563470 Score: 108
Period size: 35 Copynumber: 3.0 Consensus size: 35
7563354 TAAATAAATT
*
7563364 ATAATAATCAATTATTGTATGTATTTTTAAAAAAC
1 ATAATAATCAATTATTGTATATATTTTTAAAAAAC
* * **
7563399 ATAATAATTAAGTT-TTGTAAATATTTTTAAAATATT
1 ATAATAATCAA-TTATTGTATATATTTTTAAAA-AAC
* *
7563435 ATAATAATCAATTATTGCATTTATCTTTTAAGAAAA
1 ATAATAATCAATTATTGTATATAT-TTTTAA-AAAA
7563471 ACAGTAAATA
Statistics
Matches: 57, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
35 28 0.49
36 20 0.35
37 7 0.12
38 2 0.04
ACGTcount: A:0.45, C:0.05, G:0.06, T:0.45
Consensus pattern (35 bp):
ATAATAATCAATTATTGTATATATTTTTAAAAAAC
Found at i:7564889 original size:2 final size:2
Alignment explanation
Indices: 7564884--7564915 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7564874 ACACACACAC
7564884 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
7564916 GGTGCAGTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7565733 original size:42 final size:42
Alignment explanation
Indices: 7565685--7565769 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
7565675 AATATTTCCC
*
7565685 ACAATATTTTACGGGAAAAATTATGAGGCAGATAAGATTCTA
1 ACAATATTTTACGGGAAAAATTATGAGGAAGATAAGATTCTA
*
7565727 ACAATATTTTACGGGAAAAGTTATGAGGAAGATAAGATTCTA
1 ACAATATTTTACGGGAAAAATTATGAGGAAGATAAGATTCTA
7565769 A
1 A
7565770 GATATAAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.44, C:0.08, G:0.20, T:0.28
Consensus pattern (42 bp):
ACAATATTTTACGGGAAAAATTATGAGGAAGATAAGATTCTA
Found at i:7566224 original size:2 final size:2
Alignment explanation
Indices: 7566217--7566244 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7566207 TGATACATAC
7566217 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7566245 GGTGATATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7567574 original size:21 final size:21
Alignment explanation
Indices: 7567532--7567597 Score: 71
Period size: 21 Copynumber: 3.0 Consensus size: 21
7567522 TATATCGATA
*
7567532 TAAAATTATAAATATATATTTAT
1 TAAATTTATAAATA-AT-TTTAT
*
7567555 TAAATTTATATATAATTTTAT
1 TAAATTTATAAATAATTTTAT
*
7567576 TAAAATTT-TAAATTATTTTAT
1 T-AAATTTATAAATAATTTTAT
7567597 T
1 T
7567598 TTTATATATT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
21 18 0.47
22 8 0.21
23 12 0.32
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
TAAATTTATAAATAATTTTAT
Found at i:7568676 original size:18 final size:18
Alignment explanation
Indices: 7568653--7568689 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
7568643 TCATAATACA
7568653 TCAAATTTATAAAATGTT
1 TCAAATTTATAAAATGTT
7568671 TCAAATTTATAAAATGTT
1 TCAAATTTATAAAATGTT
7568689 T
1 T
7568690 TAAAATGTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.46
Consensus pattern (18 bp):
TCAAATTTATAAAATGTT
Found at i:7570205 original size:21 final size:21
Alignment explanation
Indices: 7570154--7570205 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 21
7570144 ATAAAAAATC
* * *
7570154 AATTATTTTTTATATAAGATA
1 AATTATTTTTTAAAAAAGAAA
* * *
7570175 ATTTAATTTTTAAAAAATAAA
1 AATTATTTTTTAAAAAAGAAA
7570196 AATTATTTTT
1 AATTATTTTT
7570206 ATTTTATGAG
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (21 bp):
AATTATTTTTTAAAAAAGAAA
Found at i:7570373 original size:27 final size:28
Alignment explanation
Indices: 7570340--7570409 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
7570330 ATAAAATAGA
7570340 ATAATATTATATAATATAATTTTATT-T
1 ATAATATTATATAATATAATTTTATTAT
*
7570367 ATAATATAATATAATATAATTTTATTAT
1 ATAATATTATATAATATAATTTTATTAT
7570395 ATTATATATTATATA
1 A-TA-ATATTATATA
7570410 CTAAACCCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 25 0.66
28 2 0.05
29 2 0.05
30 9 0.24
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (28 bp):
ATAATATTATATAATATAATTTTATTAT
Found at i:7570460 original size:19 final size:17
Alignment explanation
Indices: 7570420--7570471 Score: 54
Period size: 17 Copynumber: 3.0 Consensus size: 17
7570410 CTAAACCCAT
7570420 TTTAAATTATTTAATTA
1 TTTAAATTATTTAATTA
7570437 TTTAAATATATTATAATT-
1 TTTAAAT-TATT-TAATTA
*
7570455 TATT-AATTAATTAATTA
1 T-TTAAATTATTTAATTA
7570472 ATAATTGTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
16 5 0.17
17 10 0.33
18 8 0.27
19 7 0.23
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTAAATTATTTAATTA
Found at i:7570464 original size:23 final size:24
Alignment explanation
Indices: 7570428--7570529 Score: 74
Period size: 23 Copynumber: 4.4 Consensus size: 24
7570418 ATTTTAAATT
*
7570428 ATTTAATTATTTAAATATATT-ATA
1 ATTTAATTAATTAAATA-ATTAATA
*
7570452 ATTT-ATTAATTAATTAATTAATA
1 ATTTAATTAATTAAATAATTAATA
*
7570475 ATTGTAATTTATTAATATAA-TAATTA
1 ATT-TAATTAATTAA-ATAATTAA-TA
* *
7570501 A-TTATTTAATCAAAT-A-TAAT-
1 ATTTAATTAATTAAATAATTAATA
7570521 ATTTAATTA
1 ATTTAATTA
7570530 TAAATATAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
20 1 0.02
21 7 0.11
22 7 0.11
23 18 0.28
24 13 0.20
25 12 0.19
26 6 0.09
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (24 bp):
ATTTAATTAATTAAATAATTAATA
Found at i:7570465 original size:4 final size:4
Alignment explanation
Indices: 7570424--7570510 Score: 56
Period size: 4 Copynumber: 21.8 Consensus size: 4
7570414 ACCCATTTTA
* * * *
7570424 AATT ATTT AATT ATTT AAAT ATATT -A-T AATT TATT AATT AATT AATT
1 AATT AATT AATT AATT AATT A-ATT AATT AATT AATT AATT AATT AATT
* *
7570471 AA-T AATTGT AATT TATT AATAT AA-T AATT AATT ATTT AAT
1 AATT AA-T-T AATT AATT AAT-T AATT AATT AATT AATT AAT
7570511 CAAATATAAT
Statistics
Matches: 63, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
2 1 0.02
3 8 0.13
4 45 0.71
5 6 0.10
6 3 0.05
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (4 bp):
AATT
Found at i:7570887 original size:15 final size:15
Alignment explanation
Indices: 7570867--7570895 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7570857 TTTAGTCATC
7570867 TAACCACAAACATAA
1 TAACCACAAACATAA
7570882 TAACCACAAACATA
1 TAACCACAAACATA
7570896 GTAATATTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.28, G:0.00, T:0.14
Consensus pattern (15 bp):
TAACCACAAACATAA
Found at i:7571336 original size:27 final size:27
Alignment explanation
Indices: 7571305--7571356 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
7571295 CTATGTGTAA
*
7571305 ATAAGAGTTAGTACTTTCATAACACCT
1 ATAAGAGTTAATACTTTCATAACACCT
7571332 ATAAGAGTTAATACTTTCATAACAC
1 ATAAGAGTTAATACTTTCATAACAC
7571357 TAATTTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (27 bp):
ATAAGAGTTAATACTTTCATAACACCT
Found at i:7576518 original size:324 final size:317
Alignment explanation
Indices: 7575776--7576705 Score: 964
Period size: 324 Copynumber: 2.9 Consensus size: 317
7575766 CATTTTGGCC
* * *
7575776 TTTCACACATATCAATCATGGAAACCAAATTCAATCATTTGGACAAGTTTAATATCATGTATTAA
1 TTTCACACATATCAAT-ATAGAAACCAAGTTCAATCATTT-GACAAGTTTAATATCATGTATTGA
* * * *
7575841 AGCCATCCAAATTGTTAAAACAGAATAATAACAACAACTTTGTATTTTTGCCTTTTAATGGTAAA
64 AGCCATCCAAACTATTAAAA-AGAATAATAACAACAAATTTGTATTTTTGCC-TTTAATGG-CAA
* * * * *
7575906 AAAAGCCCTAAATAGAGGTAAACAACAACTTTTTCACATATATCAACTATGAAAACCAAGTTT-A
126 AAAAGTCCTAAATAGA-CTAAACAATAACTTTTTCACACATATCAAC--TGTAAACCAAGTTTCA
* * * * * * *
7575970 ATCATTT-GAAAAAATTTAATATCATGTTTTGAAGTTATCCAAATTGTTAAAATAGAATAATAAC
188 ATCATTTGGAATAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGAACAATAAT
* * *
7576034 AGCAAAATTATATTTTTACCTTTTAACGGCATGAAAAATCCTAAACAGAGGTAAAGAGGCAACTT
253 AGCAAAATTACATTTTTACCTTTTAACAGCATGAAAAATCCTAAACAAAGGTAAAGAGGCAACTT
* * *
7576099 TTTCACATATATCAA-ATGCAGAAAGCAAGTTCAATCATTTGAAAAGTTTAATAT-ATGTATTGA
1 TTTCACACATATCAATAT--AGAAACCAAGTTCAATCATTTGACAAGTTTAATATCATGTATTGA
7576162 AGCCATCCAAACTATTAAAAATGAATAATAACAACAAATTTGTA-TTTTGCCTTTAAATGGCCAA
64 AGCCATCCAAACTATTAAAAA-GAATAATAACAACAAATTTGTATTTTTGCCTTT-AATGG-CAA
*
7576226 AAATAGTTCCTAAATAGACTAAACGATAACTTTTTCCACACATA-CAACTGTAGAACCAAGTTTC
126 AAA-AG-TCCTAAATAGACTAAACAATAACTTTTT-CACACATATCAACTGTA-AACCAAGTTTC
*
7576290 AATCATTTGGAATAAGTTTAATATTCCATGTATTGAAGCTATCCAAACTGTTAAAAGAGAACAAT
187 AATCATTTGGAATAAGTTTAATA-T-CATGTATTGAAGCTATCCAAACTGTTAAAATAGAACAAT
* * * * * * * ***
7576355 AATATCAAATTTGCATTTTT-TCTTTTAACAGCAT-AAAAAGTCTTAAACAAATGTAAA-CGTTT
250 AATAGCAAAATTACATTTTTACCTTTTAACAGCATGAAAAA-TCCTAAACAAAGGTAAAGAGGCA
**
7576417 GTTT
314 ACTT
* *
7576421 TTTCACACATATCAACTATAGATACCAAGTTCAATTATTCTGACAAGTTTAATATCATGTATTGA
1 TTTCACACATATCAA-TATAGAAACCAAGTTCAATCATT-TGACAAGTTTAATATCATGTATTGA
* * * * * *
7576486 AGCTATGCAAACTAATAAAATAGAACAATAACAACAAATTTGTATTTTTACCTATTAACGGCATA
64 AGCCATCCAAACTATTAAAA-AGAATAATAACAACAAATTTGTATTTTTGCCT-TTAATGGCA-A
* * *
7576551 AAAAGTCCTAAATAGACATAAACAATAACTTTTTCATACATATCAACCATGGAAACTAAG-TTCA
126 AAAAGTCCTAAATAGAC-TAAACAATAACTTTTTCACACATATCAA-C-TGTAAACCAAGTTTCA
* * * * * * *
7576615 ATAATTTGG-ATAAGTTAAATATCATGTATTAAAACTATCAAAACTATTAAAATATAACAATAAT
188 ATCATTTGGAATAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGAACAATAAT
* ** * **
7576679 TGTTAATTTGTATTTTTACCTTTTAAC
253 AGCAAAATTACATTTTTACCTTTTAAC
7576706 GGCACAAAAA
Statistics
Matches: 512, Mismatches: 69, Indels: 53
0.81 0.11 0.08
Matches are distributed among these distances:
319 6 0.01
320 28 0.05
321 125 0.24
322 90 0.18
323 103 0.20
324 132 0.26
325 23 0.04
326 5 0.01
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (317 bp):
TTTCACACATATCAATATAGAAACCAAGTTCAATCATTTGACAAGTTTAATATCATGTATTGAAG
CCATCCAAACTATTAAAAAGAATAATAACAACAAATTTGTATTTTTGCCTTTAATGGCAAAAAAG
TCCTAAATAGACTAAACAATAACTTTTTCACACATATCAACTGTAAACCAAGTTTCAATCATTTG
GAATAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGAACAATAATAGCAAAAT
TACATTTTTACCTTTTAACAGCATGAAAAATCCTAAACAAAGGTAAAGAGGCAACTT
Found at i:7576731 original size:161 final size:161
Alignment explanation
Indices: 7575776--7576801 Score: 874
Period size: 161 Copynumber: 6.4 Consensus size: 161
7575766 CATTTTGGCC
* * * *
7575776 TTTCACACATATCAATCATGGAAACCAAATTCAATCATTTGGACAAGTTTAATATCATGTATTAA
1 TTTCACACATATCAACCATGGAAACCAAGTTCAATCATTTGGAAAAGTTTAATATCATGTATTGA
* * * * * * * * * *
7575841 AGCCATCCAAATTGTTAAAACAGAATAATAACAACAACTTTGTATTTTTGCCTTTTAATGGTAAA
66 AGCTATCCAAACTATTAAAATAGAACAATAACAACAAATTTGTATTTTTACCTTTTAACGGCACA
* * * *
7575906 AAAAGCCCTAAATAGAGGTAAACAACAACTT
131 AAAAGTCCTAAACAGACGTAAACAATAACTT
* * * * * * *
7575937 TTTCACATATATCAACTATGAAAACCAAGTTTAATCATTTGAAAAAATTTAATATCATGTTTTGA
1 TTTCACACATATCAACCATGGAAACCAAGTTCAATCATTTGGAAAAGTTTAATATCATGTATTGA
* * * * * * * *
7576002 AGTTATCCAAATTGTTAAAATAGAATAATAACAGCAAAATTATATTTTTACCTTTTAACGGCATG
66 AGCTATCCAAACTATTAAAATAGAACAATAACAACAAATTTGTATTTTTACCTTTTAACGGCA-C
* * **
7576067 AAAAA-TCCTAAACAGAGGTAAAGAGGCAACTT
130 AAAAAGTCCTAAACAGACGTAAACA-ATAACTT
* *
7576099 TTTCACATATATCAA--ATGCAGAAAGCAAGTTCAATCATTT-GAAAAGTTTAATAT-ATGTATT
1 TTTCACACATATCAACCATG--GAAACCAAGTTCAATCATTTGGAAAAGTTTAATATCATGTATT
* * * * *
7576160 GAAGCCATCCAAACTATTAAAA-ATGAATAATAACAACAAATTTGTA-TTTTGCCTTTAAATGGC
64 GAAGCTATCCAAACTATTAAAATA-GAACAATAACAACAAATTTGTATTTTTACCTTTTAACGGC
* *
7576223 -CAAAAATAGTTCCTAAATAGAC-TAAACGATAACTT
128 AC-AAAA-AG-TCCTAAACAGACGTAAACAATAACTT
*
7576258 TTTCCACACATA-CAA-C-TGTAGAACCAAGTTTCAATCATTTGGAATAAGTTTAATATTCCATG
1 TTT-CACACATATCAACCATGGA-AACCAAG-TTCAATCATTTGGAA-AAGTTTAATA-T-CATG
* * * * * *
7576320 TATTGAAGCTATCCAAACTGTTAAAAGAGAACAATAATATCAAATTTGCATTTTT-TCTTTTAAC
60 TATTGAAGCTATCCAAACTATTAAAATAGAACAATAACAACAAATTTGTATTTTTACCTTTTAAC
* * * * * ** ***
7576384 AGCATAAAAAGTCTTAAACAAATGTAAACGTTTGTTT
125 GGCACAAAAAGTCCTAAACAGACGTAAACAATAACTT
* * * * *
7576421 TTTCACACATATCAACTATAGATACCAAGTTCAATTATTCT-GACAAGTTTAATATCATGTATTG
1 TTTCACACATATCAACCATGGAAACCAAGTTCAATCATT-TGGAAAAGTTTAATATCATGTATTG
* * * *
7576485 AAGCTATGCAAACTAATAAAATAGAACAATAACAACAAATTTGTATTTTTACCTATTAACGGCAT
65 AAGCTATCCAAACTATTAAAATAGAACAATAACAACAAATTTGTATTTTTACCTTTTAACGGCAC
* *
7576550 AAAAAGTCCTAAATAGACATAAACAATAACTT
130 AAAAAGTCCTAAACAGACGTAAACAATAACTT
* * * * * *
7576582 TTTCATACATATCAACCATGGAAACTAAGTTCAATAATTTGGATAAGTTAAATATCATGTATTAA
1 TTTCACACATATCAACCATGGAAACCAAGTTCAATCATTTGGAAAAGTTTAATATCATGTATTGA
* * * *****
7576647 AACTATCAAAACTATTAAAATATAACAATAATTGTTAATTTGTATTTTTACCTTTTAACGGCACA
66 AGCTATCCAAACTATTAAAATAGAACAATAACAACAAATTTGTATTTTTACCTTTTAACGGCACA
** * **** *
7576712 AAAAGTTGTAAACAGACATAAATTGCAAATT
131 AAAAGTCCTAAACAGACGTAAACAATAACTT
*** * * * * *
7576743 ACGACACATATATCAACAATGGAAACCAAGTTCATTCATTCGGATAAGTTTAATATCAT
1 -TTTCACACATATCAACCATGGAAACCAAGTTCAATCATTTGGAAAAGTTTAATATCAT
7576802 AAACTTACTA
Statistics
Matches: 699, Mismatches: 137, Indels: 57
0.78 0.15 0.06
Matches are distributed among these distances:
157 1 0.00
158 10 0.01
159 40 0.06
160 113 0.16
161 319 0.46
162 117 0.17
163 28 0.04
164 64 0.09
165 7 0.01
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.32
Consensus pattern (161 bp):
TTTCACACATATCAACCATGGAAACCAAGTTCAATCATTTGGAAAAGTTTAATATCATGTATTGA
AGCTATCCAAACTATTAAAATAGAACAATAACAACAAATTTGTATTTTTACCTTTTAACGGCACA
AAAAGTCCTAAACAGACGTAAACAATAACTT
Found at i:7580112 original size:21 final size:21
Alignment explanation
Indices: 7580087--7580129 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7580077 CACTTTGAAC
7580087 ATCAAGATCACCAACTTAAGT
1 ATCAAGATCACCAACTTAAGT
* * *
7580108 ATCAATATCATCAACTTGAGT
1 ATCAAGATCACCAACTTAAGT
7580129 A
1 A
7580130 ATAGGAGGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (21 bp):
ATCAAGATCACCAACTTAAGT
Found at i:7583164 original size:190 final size:192
Alignment explanation
Indices: 7582821--7583165 Score: 455
Period size: 190 Copynumber: 1.8 Consensus size: 192
7582811 ATTAAAGGCA
* *
7582821 TTTTTTTGCAAAAAACACCTTCAATAATCCATTATATTTTTATCAAAGGATTATTCAAGGCATTT
1 TTTTTTTGCAAAAAACACCTTCAATAATCCATTATATTGTTATCAAAGGATTATTCAAGGCAATT
* * *
7582886 TTTTACAAAAAAATGCATTTAATAATTCCCTTAAATATTGACGAAGAGATTGTTGAAGGCATTTT
66 TTTTACAAAAAAATGCATTCAATAATTCCCTTAAATATTGACGAAGAGATTATTGAACGCATTTT
*
7582951 TGACTAAAAATGCCTTCAATAATCCTCACAAATTTTTTAAAAGGAATAATTGAAGGCATATT
131 TGACTAAAAATACCTTCAATAATCCTCACAAATTTTTTAAAAGGAATAATTGAAGGCATATT
* * * **
7583013 TTTTTTTGTAAAAAATACCTTCAATAATCACCTT-TATTGTTATCAGGGGATTATTCAAGG-AAT
1 TTTTTTTGCAAAAAACACCTTCAATAATC-CATTATATTGTTATCAAAGGATTATTCAAGGCAAT
* *** * * * *
7583076 TTTTTAC-CAAAAATGTC-TTCAATAATTTTGTTAAATTTTGATGAGGAGATTATTGAACGTATT
65 TTTTTACAAAAAAATG-CATTCAATAATTCCCTTAAATATTGACGAAGAGATTATTGAACGCATT
* *
7583139 TTTGACTAAAAATACTTTTAATAATCC
129 TTTGACTAAAAATACCTTCAATAATCC
7583166 CCTTAAATTT
Statistics
Matches: 130, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
190 67 0.52
191 10 0.08
192 50 0.38
193 3 0.02
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.39
Consensus pattern (192 bp):
TTTTTTTGCAAAAAACACCTTCAATAATCCATTATATTGTTATCAAAGGATTATTCAAGGCAATT
TTTTACAAAAAAATGCATTCAATAATTCCCTTAAATATTGACGAAGAGATTATTGAACGCATTTT
TGACTAAAAATACCTTCAATAATCCTCACAAATTTTTTAAAAGGAATAATTGAAGGCATATT
Found at i:7583206 original size:190 final size:191
Alignment explanation
Indices: 7582758--7583207 Score: 454
Period size: 190 Copynumber: 2.4 Consensus size: 191
7582748 TTATTCAAGA
*** * * * * *
7582758 CATTTTTGA-TAAAAACGTCTTCAATAATCTCCTCTAATTTTTTTTT-AAAAATTATTAAAGGCA
1 CATTTTTGACTAAAAATACCTTCAATAATCCCCACAAATTTTTTTTTAAAAAATTATTGAAGACA
* *
7582821 --TTTTTTTGCAAAAAACACCTTCAATAATCCATTATATTTTTATCAAAGGATTATTCAAGGCAT
66 TTTTTTTTTGCAAAAAACACCTTCAATAATCCATTATATTGTTATCAAAGGATTATTCAAGGCAA
* * *
7582884 TTTTTTACAAAAAAATGCATTTAATAATTCCCTTAAATATTGACGAAGAGATTGTTGAAGG
131 TTTTTTACAAAAAAATGCATTCAATAATTCCCTTAAATATTGACGAAGAGATTATTGAACG
* * *
7582945 CATTTTTGACTAAAAATGCCTTCAATAATCCTCACAAA---TTTTTTAAAAGGAATAATTGAAGG
1 CATTTTTGACTAAAAATACCTTCAATAATCCCCACAAATTTTTTTTTAAAA--AATTATTGAA-G
* * * * **
7583007 CATATTTTTTTTTGTAAAAAATACCTTCAATAATCACCTT-TATTGTTATCAGGGGATTATTCAA
63 -ACATTTTTTTTTGCAAAAAACACCTTCAATAATC-CATTATATTGTTATCAAAGGATTATTCAA
* *** * * *
7583071 GG-AATTTTTTAC-CAAAAATGTC-TTCAATAATTTTGTTAAATTTTGATGAGGAGATTATTGAA
126 GGCAATTTTTTACAAAAAAATG-CATTCAATAATTCCCTTAAATATTGACGAAGAGATTATTGAA
7583133 CG
190 CG
* * * **
7583135 TATTTTTGACTAAAAATACTTTTAATAATCCCCTTAAATTTTTTTTTTAAAAAATTATTGAAGAC
1 CATTTTTGACTAAAAATACCTTCAATAATCCCCACAAA-TTTTTTTTTAAAAAATTATTGAAGAC
7583200 ATTTTTTT
65 ATTTTTTT
7583208 ACAAAAAATG
Statistics
Matches: 213, Mismatches: 36, Indels: 25
0.78 0.13 0.09
Matches are distributed among these distances:
185 6 0.03
186 3 0.01
187 9 0.04
188 30 0.14
189 1 0.00
190 81 0.38
191 11 0.05
192 59 0.28
193 3 0.01
194 10 0.05
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.41
Consensus pattern (191 bp):
CATTTTTGACTAAAAATACCTTCAATAATCCCCACAAATTTTTTTTTAAAAAATTATTGAAGACA
TTTTTTTTTGCAAAAAACACCTTCAATAATCCATTATATTGTTATCAAAGGATTATTCAAGGCAA
TTTTTTACAAAAAAATGCATTCAATAATTCCCTTAAATATTGACGAAGAGATTATTGAACG
Found at i:7584111 original size:25 final size:25
Alignment explanation
Indices: 7584078--7584172 Score: 75
Period size: 25 Copynumber: 3.8 Consensus size: 25
7584068 TATATGATAT
7584078 TGGTTTGCTGAATAGTGTTTCTAAA
1 TGGTTTGCTGAATAGTGTTTCTAAA
* * * *
7584103 TGGTTTGCT-AAAAGGTATTTTTCAA
1 TGGTTTGCTGAATA-GTGTTTCTAAA
* * * *
7584128 TAGTTTACTGAATAATGTTTCTGAA
1 TGGTTTGCTGAATAGTGTTTCTAAA
* * *
7584153 TGGATTGATGAATGGTGTTT
1 TGGTTTGCTGAATAGTGTTT
7584173 TTGAACACAT
Statistics
Matches: 51, Mismatches: 17, Indels: 4
0.71 0.24 0.06
Matches are distributed among these distances:
24 3 0.06
25 45 0.88
26 3 0.06
ACGTcount: A:0.26, C:0.06, G:0.23, T:0.44
Consensus pattern (25 bp):
TGGTTTGCTGAATAGTGTTTCTAAA
Found at i:7585291 original size:46 final size:47
Alignment explanation
Indices: 7585223--7585319 Score: 117
Period size: 47 Copynumber: 2.1 Consensus size: 47
7585213 AAACCCTTTC
* *
7585223 AAAAAATTTTTTCATTTATTTATTATTTTGAAA-ACATTATTTTCAA
1 AAAAAATTTTCTCATTTATTTATTATTTTAAAATACATTATTTTCAA
* * * *
7585269 GAAAAAATTTTCTC-TTTTTTTATTTTTTTAAAATATATTTTTTTCAA
1 -AAAAAATTTTCTCATTTATTTATTATTTTAAAATACATTATTTTCAA
7585316 AAAA
1 AAAA
7585320 GATATTAATG
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
46 20 0.47
47 23 0.53
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.54
Consensus pattern (47 bp):
AAAAAATTTTCTCATTTATTTATTATTTTAAAATACATTATTTTCAA
Found at i:7585844 original size:11 final size:10
Alignment explanation
Indices: 7585828--7585867 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
7585818 AACCAAACCT
7585828 AAAAAAATTC
1 AAAAAAATTC
*
7585838 AAAAAAATTTG
1 AAAAAAA-TTC
*
7585849 AAAAAAATCC
1 AAAAAAATTC
7585859 AAAAAAATT
1 AAAAAAATT
7585868 TAGAAAGATT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.70, C:0.07, G:0.03, T:0.20
Consensus pattern (10 bp):
AAAAAAATTC
Found at i:7585852 original size:21 final size:22
Alignment explanation
Indices: 7585828--7585873 Score: 76
Period size: 21 Copynumber: 2.1 Consensus size: 22
7585818 AACCAAACCT
*
7585828 AAAAAAATTCAAAAAAATTT-G
1 AAAAAAATCCAAAAAAATTTAG
7585849 AAAAAAATCCAAAAAAATTTAG
1 AAAAAAATCCAAAAAAATTTAG
7585871 AAA
1 AAA
7585874 GATTCGCAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.70, C:0.07, G:0.04, T:0.20
Consensus pattern (22 bp):
AAAAAAATCCAAAAAAATTTAG
Found at i:7586305 original size:3 final size:3
Alignment explanation
Indices: 7586299--7586366 Score: 118
Period size: 3 Copynumber: 22.7 Consensus size: 3
7586289 CAACAACAAC
* *
7586299 AAT AAT AAT AAT AAT AGT AAT AAT AAT AAT AGT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7586347 AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AA
7586367 CGATAAAAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7586456 original size:26 final size:25
Alignment explanation
Indices: 7586423--7586482 Score: 93
Period size: 26 Copynumber: 2.4 Consensus size: 25
7586413 GTTAGGCTTC
*
7586423 ACCAAAATGGGCCCAATTGGGTTCGG
1 ACCAAAATGGGCCCAATT-GGATCGG
7586449 ACCAAAATGGGCCCAATTGGATCGG
1 ACCAAAATGGGCCCAATTGGATCGG
*
7586474 ACAAAAATG
1 ACCAAAATG
7586483 AGTATTTACA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 14 0.44
26 18 0.56
ACGTcount: A:0.35, C:0.22, G:0.27, T:0.17
Consensus pattern (25 bp):
ACCAAAATGGGCCCAATTGGATCGG
Found at i:7586787 original size:119 final size:118
Alignment explanation
Indices: 7586637--7586861 Score: 283
Period size: 119 Copynumber: 1.9 Consensus size: 118
7586627 ATGACCAACC
* * * * * * *
7586637 GAGTCGAGGTTGAAAATGAATGATCAGGATGGAATCACGAATCATAAGAAATGATCT-AGACTGA
1 GAGTCAAGGTCGAAAATAAATGATCAGGATGGAACCACAAATCAAAAGAAATGATCTGA-ACTAA
*
7586701 GCCAAGAACAAGTGATCGAGATAAAACCACAAGTTAAAATAAAGTAACCCGGACT
65 GCCAAG-ACAAGTGATCGAGATAAAACCACAAGTAAAAATAAAGTAACCCGGACT
* *
7586756 GAGTCAAGGTCGAGAATAAATGATC-GAGATGGAACCACAAATCAAAAGAACTGATCTGAACTAA
1 GAGTCAAGGTCGAAAATAAATGATCAG-GATGGAACCACAAATCAAAAGAAATGATCTGAACTAA
* * * *
7586820 GCCAAGATAAGTGATCGGGATGAAACCATAAGTAAAAATAAA
65 GCCAAGACAAGTGATCGAGATAAAACCACAAGTAAAAATAAA
7586862 ACAATCAAGA
Statistics
Matches: 90, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
118 32 0.36
119 57 0.63
120 1 0.01
ACGTcount: A:0.45, C:0.15, G:0.22, T:0.18
Consensus pattern (118 bp):
GAGTCAAGGTCGAAAATAAATGATCAGGATGGAACCACAAATCAAAAGAAATGATCTGAACTAAG
CCAAGACAAGTGATCGAGATAAAACCACAAGTAAAAATAAAGTAACCCGGACT
Found at i:7586897 original size:104 final size:104
Alignment explanation
Indices: 7586777--7586985 Score: 287
Period size: 104 Copynumber: 2.0 Consensus size: 104
7586767 GAGAATAAAT
* *
7586777 GATCGAGATGGAACCACAAATCAAAAGAACTGATCT-GAACTAAGCCAAGAT-AAGTGATCGGGA
1 GATCGAGATGAAACCACAAATCAAAAGAA-TGATCTAG-ACTAAGCCAAGATCAAGTGAGCGGGA
* *
7586840 TGAAACCATAAGTAAAAATAAAACAATCAAGATCGAGTCAA
64 TGAAACCATAAATAAAAATAAAACAAGCAAGATCGAGTCAA
* * * *
7586881 GATCGAGATGAAACCACAAATCATAAGAATGATCTAGATTGAGTCAAGATCAAGTGAGCGGGATG
1 GATCGAGATGAAACCACAAATCAAAAGAATGATCTAGACTAAGCCAAGATCAAGTGAGCGGGATG
* * *
7586946 AAACCATAAATCAAAGTAAAACAAGCAGGATCGAGTCAA
66 AAACCATAAATAAAAATAAAACAAGCAAGATCGAGTCAA
7586985 G
1 G
7586986 GTTGAGAGTA
Statistics
Matches: 92, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
103 16 0.17
104 76 0.83
ACGTcount: A:0.46, C:0.16, G:0.21, T:0.17
Consensus pattern (104 bp):
GATCGAGATGAAACCACAAATCAAAAGAATGATCTAGACTAAGCCAAGATCAAGTGAGCGGGATG
AAACCATAAATAAAAATAAAACAAGCAAGATCGAGTCAA
Found at i:7587969 original size:23 final size:23
Alignment explanation
Indices: 7587943--7587986 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
7587933 TTAATTTGAC
* * *
7587943 CTTTCTCTTTTTTTTTTTTTTTG
1 CTTTATCTTTTATTTTGTTTTTG
7587966 CTTTATCTTTTATTTTGTTTT
1 CTTTATCTTTTATTTTGTTTT
7587987 GTTTTTTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.05, C:0.11, G:0.05, T:0.80
Consensus pattern (23 bp):
CTTTATCTTTTATTTTGTTTTTG
Found at i:7594306 original size:162 final size:160
Alignment explanation
Indices: 7593929--7594471 Score: 596
Period size: 161 Copynumber: 3.4 Consensus size: 160
7593919 NNNNNNNNNN
* * * *
7593929 AAACCAAGTTTAATCATTTGAAAAAGTTTAATATCATGTTTTGAAGTTATCCAAATTGTTAAAAT
1 AAACCAAGTTCAATCATTTGAAAAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAAT
* * * * *
7593994 AGAATAATAACAGCAAAATTATATTTTTACCTTTTAACAGCACGAAAAA-TCCTAAACAGAGGTA
66 AGAATAATAACAACAAATTTGTATTTTT-CCTTTTAACAG-ACAAAAAAGTCCTAAACAGACGTA
* ** * * *
7594058 AATAGCAACTTTTTCACATATATAAAATGTAG
129 AACAATAACTTTTTCACACATATCAACTGTAG
* * *
7594090 AAAGCAAGTTCAATCATTTGAAAAAGTTTAATATCATGTATTGAAGCCATCCAAACTATTAAAAT
1 AAACCAAGTTCAATCATTTGAAAAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAAT
* *
7594155 AGAATAATAACAACAAATTTGTATTTTTGCC-TTTAA-ATGACAAAAATAGTCCTAAATAGACAT
66 AGAATAATAACAACAAATTTGTATTTTT-CCTTTTAACA-GACAAAAA-AGTCCTAAACAGACGT
* *
7594218 AAACAATAACTTTTTCCTCACATACCAACTGTAG
128 AAACAATAACTTTTT-CACACATATCAACTGTAG
*
7594252 AAACCAAGTTCAATCATTTGGATAAA-TTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAA
1 AAACCAAGTTCAATCATTT-GAAAAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAA
* * * * * * * *
7594316 GAGAACAATAATATCAAATTTGCATTTTTCCTTTTAACAG-CATAAAAAGTCTTAAACAAATGTA
65 TAGAATAATAACAACAAATTTGTATTTTTCCTTTTAACAGACA-AAAAAGTCCTAAACAGACGTA
** ** *
7594380 AACGTTTGCTTTTTCACACAT-TCAACTATAG
129 AACAATAACTTTTTCACACATATCAACTGTAG
* * * *
7594411 ATACCAAGTTCAATTATTCTG-ACAAGTTTAATATCATGTATTGAAGCTATGCAAACTGTTA
1 AAACCAAGTTCAATCATT-TGAAAAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTA
7594472 GACATAAACG
Statistics
Matches: 323, Mismatches: 49, Indels: 22
0.82 0.12 0.06
Matches are distributed among these distances:
158 2 0.01
159 66 0.20
160 14 0.04
161 134 0.41
162 101 0.31
163 6 0.02
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (160 bp):
AAACCAAGTTCAATCATTTGAAAAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAAT
AGAATAATAACAACAAATTTGTATTTTTCCTTTTAACAGACAAAAAAGTCCTAAACAGACGTAAA
CAATAACTTTTTCACACATATCAACTGTAG
Found at i:7598420 original size:21 final size:21
Alignment explanation
Indices: 7598395--7598437 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7598385 CACTTTGAAC
7598395 ATCAAGATCACCAACTTAAGT
1 ATCAAGATCACCAACTTAAGT
* * *
7598416 ATCAATATCATCAACTTGAGT
1 ATCAAGATCACCAACTTAAGT
7598437 A
1 A
7598438 ATAGGAGGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (21 bp):
ATCAAGATCACCAACTTAAGT
Found at i:7601189 original size:62 final size:62
Alignment explanation
Indices: 7601084--7601408 Score: 205
Period size: 62 Copynumber: 5.2 Consensus size: 62
7601074 ACCAAAACGT
* * ** * *
7601084 CTTCAATAATCTCCTT-TAATTTTTTTAAAAAAATTATTAAAGGTATTTTTTTGCAAAAAACGC
1 CTTCAATAATC-CCTTAT-ATTTTTATCAAAGGATTATTCAAGGTATTTTTTTGCAAAAAATGC
* * *
7601147 CTTCAATAATCCCTTCTATTTTTATCAAAGGATTATTCAAGGTATTTTTTT-TACAAAAATAC
1 CTTCAATAATCCCTTATATTTTTATCAAAGGATTATTCAAGGTATTTTTTTGCA-AAAAATGC
* * * * * * * *
7601209 CTTTAATAATTCCCTTAAATATTGA-CGAAGAGATTATTGAAGGTA--TTTTTGACTAAAAATAC
1 CTTCAATAA-TCCCTTATATTTTTATCAAAG-GATTATTCAAGGTATTTTTTTG-CAAAAAATGC
* * * * * *
7601271 CTTCAATAATCCCCATAAATTTTT-TAAAAGGAATAATTGAAGGTATTTTTTTTTGGTAAAAAAT
1 CTTCAATAAT-CCCTTATATTTTTATCAAAGG-ATTATTCAAGGTA--TTTTTTT-GCAAAAAAT
7601335 GC
61 GC
* * * ** * * * *
7601337 ATTCAATAATCACC-TCTATTGTTATCAGGGGATTATTCAAGGAATTTTTTTACCAAAAATGT
1 CTTCAATAATC-CCTTATATTTTTATCAAAGGATTATTCAAGGTATTTTTTTGCAAAAAATGC
7601399 CTTCAATAAT
1 CTTCAATAAT
7601409 TTCGTTAAAT
Statistics
Matches: 204, Mismatches: 42, Indels: 33
0.73 0.15 0.12
Matches are distributed among these distances:
61 8 0.04
62 108 0.53
63 43 0.21
65 17 0.08
66 27 0.13
67 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (62 bp):
CTTCAATAATCCCTTATATTTTTATCAAAGGATTATTCAAGGTATTTTTTTGCAAAAAATGC
Found at i:7601396 original size:190 final size:186
Alignment explanation
Indices: 7601084--7601560 Score: 546
Period size: 190 Copynumber: 2.5 Consensus size: 186
7601074 ACCAAAACGT
* * * *
7601084 CTTCAATAATCTCCTTTAATTTTTTTAAAAAAATTATTAAAGGTATTTTTTTGCAAAAAACGCCT
1 CTTCAATAATC-CCCTTAAATTTTTTAAAAAAATAATTAAAGGTATTTTTTTGCAAAAAACGCAT
* * *
7601149 TCAATAATCCCTTCTATTTTTATCAAAGGATTATTCAAGGTATTTTTTTTACAAAAATACCTTTA
65 TCAATAATCCCTTCTATTGTTATCAAAGGATTATTCAAGGTAATTTTTTTACAAAAATACCTTCA
* *
7601214 ATAATTCCCTTAAATATTGACGAAGAGATTATTGAAGGTATTTTTGACTAAAAATAC
130 ATAATTCCCTTAAATATTGACGAAGAGATTATTGAAGGCATTTTTGACTAAAAACAC
* * * * *
7601271 CTTCAATAATCCCCATAAATTTTTTAAAAGGAATAATTGAAGGTATTTTTTTTTGGTAAAAAATG
1 CTTCAATAATCCCCTTAAATTTTTTAAAA-AAATAATTAAAGGTA--TTTTTTT-GCAAAAAACG
** **
7601336 CATTCAATAATCACC-TCTATTGTTATCAGGGGATTATTCAAGG-AATTTTTTTACCAAAAATGT
62 CATTCAATAATC-CCTTCTATTGTTATCAAAGGATTATTCAAGGTAATTTTTTTA-CAAAAATAC
* * * * *
7601399 CTTCAATAATTTCGTTAAATTTTGATGAGGAGATTATTGAAGGCATTTTTGACTAAAAACAC
125 CTTCAATAATTCCCTTAAATATTGACGAAGAGATTATTGAAGGCATTTTTGACTAAAAACAC
* * * * *
7601461 TTTTAATAATCCCCTTAAATTTTTTTTTAAAAAAATTATTAAAGATATTTTTTTACAAAAAACGC
1 CTTCAATAATCCCCTTAAA---TTTTTTAAAAAAATAATTAAAGGTATTTTTTTGCAAAAAACGC
* * * *
7601526 GTTTAATAATCCCTT-TCATTTTTATCAAAAGATTA
63 ATTCAATAATCCCTTCT-ATTGTTATCAAAGGATTA
7601561 CTAGAGGTGA
Statistics
Matches: 240, Mismatches: 39, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
186 15 0.06
187 23 0.10
188 3 0.01
189 48 0.20
190 128 0.53
191 2 0.01
192 11 0.05
193 10 0.04
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.41
Consensus pattern (186 bp):
CTTCAATAATCCCCTTAAATTTTTTAAAAAAATAATTAAAGGTATTTTTTTGCAAAAAACGCATT
CAATAATCCCTTCTATTGTTATCAAAGGATTATTCAAGGTAATTTTTTTACAAAAATACCTTCAA
TAATTCCCTTAAATATTGACGAAGAGATTATTGAAGGCATTTTTGACTAAAAACAC
Found at i:7602414 original size:25 final size:25
Alignment explanation
Indices: 7602383--7602475 Score: 71
Period size: 25 Copynumber: 3.7 Consensus size: 25
7602373 TATGATATTA
7602383 GTTTGCTGAATAGTGTTTCTAAATG
1 GTTTGCTGAATAGTGTTTCTAAATG
* * * * *
7602408 GTTTGCT-AAAAGGTATTTTTCAATA
1 GTTTGCTGAATA-GTGTTTCTAAATG
* * * *
7602433 GTTTACTAAATAATGTTTCTGAATG
1 GTTTGCTGAATAGTGTTTCTAAATG
* *
7602458 GATTGCTGAATGGTGTTT
1 GTTTGCTGAATAGTGTTT
7602476 TTGAACACAT
Statistics
Matches: 49, Mismatches: 17, Indels: 4
0.70 0.24 0.06
Matches are distributed among these distances:
24 3 0.06
25 43 0.88
26 3 0.06
ACGTcount: A:0.27, C:0.08, G:0.22, T:0.44
Consensus pattern (25 bp):
GTTTGCTGAATAGTGTTTCTAAATG
Done.