Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14313602
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 50000 characters in sequence are not A, C, G, or T
File 35 of 74
Found at i:7603069 original size:38 final size:38
Alignment explanation
Indices: 7603026--7603103 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
7603016 TGAGAAAGCA
* *
7603026 TTCAGAGACTTTAAAAGCATATTGACAACCTAATATAT
1 TTCAGAGACTTTAAAAGCATATTAACAACCCAATATAT
7603064 TTCAGAGACTTTAAAAGCATATTAACAACCCAATATAT
1 TTCAGAGACTTTAAAAGCATATTAACAACCCAATATAT
7603102 TT
1 TT
7603104 TACCGCTAGC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.42, C:0.17, G:0.09, T:0.32
Consensus pattern (38 bp):
TTCAGAGACTTTAAAAGCATATTAACAACCCAATATAT
Found at i:7604150 original size:19 final size:19
Alignment explanation
Indices: 7604122--7604158 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
7604112 ATCGCTGGAA
7604122 ACTTCATCGAAAAATTCAT
1 ACTTCATCGAAAAATTCAT
*
7604141 ACTTCGTCGAAAAATTCA
1 ACTTCATCGAAAAATTCA
7604159 ACCAAACCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.30
Consensus pattern (19 bp):
ACTTCATCGAAAAATTCAT
Found at i:7604183 original size:10 final size:10
Alignment explanation
Indices: 7604168--7604219 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
7604158 AACCAAACCT
7604168 AAAAAAATTC
1 AAAAAAATTC
*
7604178 AAAAAAATTTGA
1 AAAAAAA-TT-C
*
7604190 AAAAAAATCC
1 AAAAAAATTC
*
7604200 AAAAAAATTT
1 AAAAAAATTC
*
7604210 AAAAAGATTC
1 AAAAAAATTC
7604220 CCAGATGATT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
10 23 0.70
11 3 0.09
12 7 0.21
ACGTcount: A:0.67, C:0.08, G:0.04, T:0.21
Consensus pattern (10 bp):
AAAAAAATTC
Found at i:7604184 original size:11 final size:11
Alignment explanation
Indices: 7604168--7604206 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
7604158 AACCAAACCT
7604168 AAAAAAATTCA
1 AAAAAAATTCA
* *
7604179 AAAAAATTTGA
1 AAAAAAATTCA
*
7604190 AAAAAAATCCA
1 AAAAAAATTCA
7604201 AAAAAA
1 AAAAAA
7604207 TTTAAAAAGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.74, C:0.08, G:0.03, T:0.15
Consensus pattern (11 bp):
AAAAAAATTCA
Found at i:7604196 original size:22 final size:21
Alignment explanation
Indices: 7604168--7604214 Score: 76
Period size: 22 Copynumber: 2.2 Consensus size: 21
7604158 AACCAAACCT
*
7604168 AAAAAAATTCAAAAAAATTTGA
1 AAAAAAATCCAAAAAAATTT-A
7604190 AAAAAAATCCAAAAAAATTTA
1 AAAAAAATCCAAAAAAATTTA
7604211 AAAA
1 AAAA
7604215 GATTCCCAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 5 0.21
22 19 0.79
ACGTcount: A:0.72, C:0.06, G:0.02, T:0.19
Consensus pattern (21 bp):
AAAAAAATCCAAAAAAATTTA
Found at i:7604650 original size:3 final size:3
Alignment explanation
Indices: 7604644--7604669 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7604634 CAAGAACTGC
7604644 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
7604670 CGATAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7605079 original size:118 final size:117
Alignment explanation
Indices: 7604934--7605226 Score: 320
Period size: 118 Copynumber: 2.5 Consensus size: 117
7604924 GTTGAAAATG
* * * * *
7604934 AATGATCAGAATGGAATCACGAATCATAAGAAATGATCTGGATTGAGCCAAGAT-AAGTGATCGG
1 AATGATCAG-ATGAAACCACGAATCATAAG-AATGATCTAGATTGAGCCAAGATCAAGTGACCGA
* *
7604998 GATAAAACCATAAGTAAAAATAAAACAACCAAGATCGAGTCAAGATCGAGAATA
64 GATAAAACCATAAATAAAAATAAAACAACCAAGACCGAGTCAAGATCGAGAATA
*
7605052 AATGATCGAGATGAAACCACGAATCATAAGAATGATCTAGATTGAGTCAAGATCAAGTGACCGAG
1 AATGATC-AGATGAAACCACGAATCATAAGAATGATCTAGATTGAGCCAAGATCAAGTGACCGAG
* * * * * * * *
7605117 ATGAAACCATAAATCAAAATAAAGCAAGCAGGACCGAGTCAAGGTTGAGAGTA
65 ATAAAACCATAAATAAAAATAAAACAACCAAGACCGAGTCAAGATCGAGAATA
* ** * * *
7605170 AATAATCAAGACAAAACCACGAATCATAAGGAACGA-CTTTGACTGAGCCAAGATCAA
1 AATGATC-AGATGAAACCACGAATCATAA-GAATGATC-TAGATTGAGCCAAGATCAA
7605227 ATGAGTGATA
Statistics
Matches: 147, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
117 21 0.14
118 103 0.70
119 23 0.16
ACGTcount: A:0.46, C:0.16, G:0.20, T:0.18
Consensus pattern (117 bp):
AATGATCAGATGAAACCACGAATCATAAGAATGATCTAGATTGAGCCAAGATCAAGTGACCGAGA
TAAAACCATAAATAAAAATAAAACAACCAAGACCGAGTCAAGATCGAGAATA
Found at i:7606141 original size:20 final size:22
Alignment explanation
Indices: 7606118--7606158 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
7606108 TCAATTTGAT
*
7606118 CTTTCTCTTTT-TTTT-TTTTA
1 CTTTATCTTTTATTTTATTTTA
7606138 CTTTATCTTTTATTTTATTTT
1 CTTTATCTTTTATTTTATTTT
7606159 GTTTTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 10 0.56
21 4 0.22
22 4 0.22
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.78
Consensus pattern (22 bp):
CTTTATCTTTTATTTTATTTTA
Found at i:7616906 original size:11 final size:10
Alignment explanation
Indices: 7616882--7616920 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
7616872 AACCAAACCT
7616882 AAAAAAATTC
1 AAAAAAATTC
*
7616892 AAAAAACTTC
1 AAAAAAATTC
*
7616902 AAAAAAATTTT
1 AAAAAAA-TTC
7616913 AAAAAAAT
1 AAAAAAAT
7616921 CTAGAAAGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.23
Consensus pattern (10 bp):
AAAAAAATTC
Found at i:7617350 original size:6 final size:6
Alignment explanation
Indices: 7617334--7617423 Score: 58
Period size: 6 Copynumber: 15.0 Consensus size: 6
7617324 AACAAAACAA
* * * * *
7617334 AAAAAT AAAAAT GAAAATAT AATAAT AATAAT AATAAT AACAAT AATAAT
1 AAAAAT AAAAAT -AAAA-AT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
* * * * *
7617384 AATAAT -AAAAT AATAAT AATAAT AACAAT TAAAA- AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
7617424 CTAATTGGAC
Statistics
Matches: 71, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
5 8 0.11
6 54 0.76
7 7 0.10
8 2 0.03
ACGTcount: A:0.71, C:0.02, G:0.01, T:0.26
Consensus pattern (6 bp):
AAAAAT
Found at i:7617360 original size:3 final size:3
Alignment explanation
Indices: 7617352--7617408 Score: 98
Period size: 3 Copynumber: 19.3 Consensus size: 3
7617342 AAATGAAAAT
*
7617352 ATA ATA ATA ATA ATA ATA ATA ACA ATA ATA ATA ATA ATA A-A ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7617399 ATA ATA ATA A
1 ATA ATA ATA A
7617409 CAATTAAAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
2 2 0.04
3 49 0.96
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:7620482 original size:62 final size:59
Alignment explanation
Indices: 7620370--7620613 Score: 188
Period size: 62 Copynumber: 4.0 Consensus size: 59
7620360 TTTTTTTTAC
* * * * * *
7620370 CAAAAATGCTTTCAATAATCCTTTCTAATTTTT-TG-GAGAATTATTGAAGGCATTTCTGG
1 CAAAAATACCTTCAATAATCCCTTC-ATTTTTTATGAGAGGATTATTCAAGGCATTT-TGG
* *
7620429 CAGAAAATGCCTTCAATAATCACCTTCATTTTTTATGAGAGGATTATTCAAGGCATTGTTTG
1 CA-AAAATACCTTCAATAATC-CCTTCATTTTTTATGAGAGGATTATTCAAGGCATT-TTGG
* * *
7620491 CTAAAAATATCTTCAATAATCCTCTATTCATTTGTTATGAGAGGATTATTCAAGGTATTTTTTTG
1 C-AAAAATACCTTCAATAATCC-C--TTCATTTTTTATGAGAGGATTATTCAAGGCA---TTTTG
*
7620556 T
59 G
* * * * * *
7620557 TAAAAACACATTCAATAATCACTTCAGTTTTTTA-GAAAGGATTATTTAAGGCATTTT
1 CAAAAATACCTTCAATAATCCCTTCA-TTTTTTATGAGAGGATTATTCAAGGCATTTT
7620614 AGTTGATAAA
Statistics
Matches: 151, Mismatches: 21, Indels: 26
0.76 0.11 0.13
Matches are distributed among these distances:
59 6 0.04
60 23 0.15
61 7 0.05
62 57 0.38
63 8 0.05
64 30 0.20
65 16 0.11
66 2 0.01
67 2 0.01
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.41
Consensus pattern (59 bp):
CAAAAATACCTTCAATAATCCCTTCATTTTTTATGAGAGGATTATTCAAGGCATTTTGG
Found at i:7620541 original size:64 final size:65
Alignment explanation
Indices: 7620453--7620576 Score: 180
Period size: 64 Copynumber: 1.9 Consensus size: 65
7620443 AATAATCACC
* *
7620453 TTCATTTTTTATGAGAGGATTATTCAAGGCA-TTGTTTGCTAAAAATATC-TTCAATAATCCTCT
1 TTCATTTGTTATGAGAGGATTATTCAAGGCATTTGTTTGCTAAAAACA-CATTCAATAATCCTCT
7620516 A
65 A
* * *
7620517 TTCATTTGTTATGAGAGGATTATTCAAGGTATTTTTTTGTTAAAAACACATTCAATAATC
1 TTCATTTGTTATGAGAGGATTATTCAAGGCATTTGTTTGCTAAAAACACATTCAATAATC
7620577 ACTTCAGTTT
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
64 30 0.57
65 23 0.43
ACGTcount: A:0.32, C:0.12, G:0.13, T:0.43
Consensus pattern (65 bp):
TTCATTTGTTATGAGAGGATTATTCAAGGCATTTGTTTGCTAAAAACACATTCAATAATCCTCTA
Found at i:7629608 original size:46 final size:47
Alignment explanation
Indices: 7629520--7629615 Score: 140
Period size: 46 Copynumber: 2.1 Consensus size: 47
7629510 GGGTTTCAAT
* *
7629520 TTTAAAAGTTTAAAAGTTTTGGATTTCGGATTTTAGGAGGTTTTGGA
1 TTTAAAAGTTTAAAAGTTTGGGATTTCGGATTTTAGGAGGTTTCGGA
* * *
7629567 TTTAAAAGTTTAAGA-TTTGGGATTTCGGATTTTGGGGGGTTTCGGA
1 TTTAAAAGTTTAAAAGTTTGGGATTTCGGATTTTAGGAGGTTTCGGA
7629613 TTT
1 TTT
7629616 TAGGGGGTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
46 30 0.68
47 14 0.32
ACGTcount: A:0.24, C:0.03, G:0.28, T:0.45
Consensus pattern (47 bp):
TTTAAAAGTTTAAAAGTTTGGGATTTCGGATTTTAGGAGGTTTCGGA
Found at i:7629629 original size:16 final size:16
Alignment explanation
Indices: 7629593--7629686 Score: 100
Period size: 17 Copynumber: 5.8 Consensus size: 16
7629583 TTGGGATTTC
*
7629593 GGATTTTGGGGGGTTT
1 GGATTTTAGGGGGTTT
7629609 CGGATTTTAGGGGGTTT
1 -GGATTTTAGGGGGTTT
* **
7629626 GGATTTAAGGGATTTT
1 GGATTTTAGGGGGTTT
*
7629642 GGATTTTTA-GGAGTTT
1 GGA-TTTTAGGGGGTTT
*
7629658 GGATTTTAGGGGATTTT
1 GGATTTTAGGGG-GTTT
7629675 GGATTTTAGGGG
1 GGATTTTAGGGG
7629687 TTTTAGAAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
15 5 0.08
16 27 0.41
17 34 0.52
ACGTcount: A:0.16, C:0.01, G:0.39, T:0.44
Consensus pattern (16 bp):
GGATTTTAGGGGGTTT
Found at i:7629631 original size:33 final size:33
Alignment explanation
Indices: 7629593--7629686 Score: 120
Period size: 32 Copynumber: 2.9 Consensus size: 33
7629583 TTGGGATTTC
* * *
7629593 GGATTTTGGGGGGTTTCGGATTTTAGGGGGTTT
1 GGATTTTAGGGGATTTTGGATTTTAGGGGGTTT
* *
7629626 GGA-TTTAAGGGATTTTGGATTTTTA-GGAGTTT
1 GGATTTTAGGGGATTTTGGA-TTTTAGGGGGTTT
7629658 GGATTTTAGGGGATTTTGGATTTTAGGGG
1 GGATTTTAGGGGATTTTGGATTTTAGGGG
7629687 TTTTAGAAAA
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
32 26 0.51
33 25 0.49
ACGTcount: A:0.16, C:0.01, G:0.39, T:0.44
Consensus pattern (33 bp):
GGATTTTAGGGGATTTTGGATTTTAGGGGGTTT
Found at i:7629647 original size:32 final size:33
Alignment explanation
Indices: 7629610--7629686 Score: 113
Period size: 33 Copynumber: 2.4 Consensus size: 33
7629600 GGGGGGTTTC
7629610 GGATTTTAGGGGGTTTGGA-TTTAAGGGATTTT
1 GGATTTTAGGGGGTTTGGATTTTAAGGGATTTT
* *
7629642 GGATTTTTA-GGAGTTTGGATTTTAGGGGATTTT
1 GGA-TTTTAGGGGGTTTGGATTTTAAGGGATTTT
7629675 GGATTTTAGGGG
1 GGATTTTAGGGG
7629687 TTTTAGAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
32 17 0.44
33 22 0.56
ACGTcount: A:0.18, C:0.00, G:0.38, T:0.44
Consensus pattern (33 bp):
GGATTTTAGGGGGTTTGGATTTTAAGGGATTTT
Found at i:7630314 original size:14 final size:14
Alignment explanation
Indices: 7630295--7630329 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
7630285 ACCGATTCAA
7630295 GGTTGGCTGAAGCG
1 GGTTGGCTGAAGCG
7630309 GGTTGGCTGAAGCG
1 GGTTGGCTGAAGCG
7630323 GGTTGGC
1 GGTTGGC
7630330 AGGTCGCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.11, C:0.14, G:0.51, T:0.23
Consensus pattern (14 bp):
GGTTGGCTGAAGCG
Found at i:7630741 original size:16 final size:16
Alignment explanation
Indices: 7630722--7630755 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7630712 TGTTCTTCTC
7630722 TTTTTCTTTTCTTTTG
1 TTTTTCTTTTCTTTTG
* *
7630738 TTTTTGTTTTGTTTTG
1 TTTTTCTTTTCTTTTG
7630754 TT
1 TT
7630756 GAAACAAGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.00, C:0.06, G:0.12, T:0.82
Consensus pattern (16 bp):
TTTTTCTTTTCTTTTG
Found at i:7631576 original size:88 final size:88
Alignment explanation
Indices: 7631408--7631577 Score: 189
Period size: 88 Copynumber: 1.9 Consensus size: 88
7631398 AAACACAAAA
* * * *
7631408 CGATTGGGATGACACCGCAAGTCGAAAAATAATGAATCAATCAAGATAATATCACGAATCAAATT
1 CGATTGGGATAACACCACAAGTCGAAAAATAAAGAATCAATCAAGATAACATCACGAATCAAATT
* * *
7631473 TATGCCCAGAGGTCTTACAGAAT
66 TATACCCAAAAGTCTTACAGAAT
* * * * * * *
7631496 CGATTGGGATAACACTACGAGTTGAAAAATAAAGAATCGATCGAGATAACA-CCCTGAATCGAAT
1 CGATTGGGATAACACCACAAGTCGAAAAATAAAGAATCAATCAAGATAACATCAC-GAATCAAAT
*
7631560 TTATACTCAAAAGTCTTA
65 TTATACCCAAAAGTCTTA
7631578 GACATCATGC
Statistics
Matches: 66, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
87 2 0.03
88 64 0.97
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.24
Consensus pattern (88 bp):
CGATTGGGATAACACCACAAGTCGAAAAATAAAGAATCAATCAAGATAACATCACGAATCAAATT
TATACCCAAAAGTCTTACAGAAT
Found at i:7631720 original size:133 final size:131
Alignment explanation
Indices: 7631482--7631873 Score: 441
Period size: 133 Copynumber: 2.9 Consensus size: 131
7631472 TTATGCCCAG
* * * * *
7631482 AGGTCTTACAGAATCGATTGGGATAACACTACGAGTTGAAAAATAAAGAATCGATCGAGATAACA
1 AGGTCTTACAGAATCGATTGGGATAACACCACAAG-TCAAAGATAAAGAACCGATCGAGATAACA
* * * * *
7631547 CCCTGAATCGAATTTATACTCA-AAAGTCTTAGACATCATGCCCGGAGGTCTTACAGAATCAT-A
65 CCC-GAATCAAATTTATGC-CAGAAAGTCTTAGAAATCATGCTCGGAGGTCTTACAGAATCATGC
*
7631610 TTCGA
128 CT-GA
* * * * *
7631615 AGGTCTTATAGAATCGACTGAGATAACACCACAAGTCAAGAGATAAAGAACCGATTGGGATAACA
1 AGGTCTTACAGAATCGATTGGGATAACACCACAAGTCAA-AGATAAAGAACCGATCGAGATAACA
* *
7631680 CCTCGAATCAAATTTATGCCAGGAGGTCTTAGAAATCATGCTCGGAGGTCTTACAGAATCATGCC
65 CC-CGAATCAAATTTATGCCAGAAAGTCTTAGAAATCATGCTCGGAGGTCTTACAGAATCATGCC
*
7631745 TGG
129 TGA
*
7631748 AGGTCTTACAGAATTGATTGGGATAACACCACAAGTCAAAAGATAAA-AACTCGATCGAGATAAC
1 AGGTCTTACAGAATCGATTGGGATAACACCACAAGTC-AAAGATAAAGAAC-CGATCGAGATAAC
* * * *
7631812 ACCGCAAATCAAATTTTATGTTC-GAAAGTCTTAGAAATCATGCTCGAAAGTCTTACAGAATC
64 ACC-CGAATCAAA-TTTATG-CCAGAAAGTCTTAGAAATCATGCTCGGAGGTCTTACAGAATC
7631874 GATTAGGATA
Statistics
Matches: 219, Mismatches: 32, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
132 8 0.04
133 165 0.75
134 45 0.21
135 1 0.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (131 bp):
AGGTCTTACAGAATCGATTGGGATAACACCACAAGTCAAAGATAAAGAACCGATCGAGATAACAC
CCGAATCAAATTTATGCCAGAAAGTCTTAGAAATCATGCTCGGAGGTCTTACAGAATCATGCCTG
A
Found at i:7631743 original size:23 final size:23
Alignment explanation
Indices: 7631695--7631761 Score: 93
Period size: 23 Copynumber: 3.0 Consensus size: 23
7631685 AATCAAATTT
* *
7631695 ATGCCAGGAGGTCTTAGA-AATC
1 ATGCCTGGAGGTCTTACAGAATC
7631717 ATG-CTCGGAGGTCTTACAGAATC
1 ATGCCT-GGAGGTCTTACAGAATC
7631740 ATGCCTGGAGGTCTTACAGAAT
1 ATGCCTGGAGGTCTTACAGAAT
7631762 TGATTGGGAT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
21 1 0.03
22 14 0.35
23 23 0.57
24 2 0.05
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.25
Consensus pattern (23 bp):
ATGCCTGGAGGTCTTACAGAATC
Found at i:7632141 original size:110 final size:110
Alignment explanation
Indices: 7631717--7632273 Score: 512
Period size: 111 Copynumber: 5.0 Consensus size: 110
7631707 CTTAGAAATC
* * * *
7631717 ATGCTCGGAGGTCTTACAGAATCATGCCTGGAGGTCTTACAGAATTGATTGGGATAACACCACAA
1 ATGCTTGGAGGTCTTACAAAATCAT-CCTAGAGGTCTTACAGAATCGATTGGGATAACACCACAA
* *
7631782 GTCAAAAGATAAA-AACTCGATC-GAGATAACACCGCAAATCAAATTTT
65 GTCAAAAGATAAAGAA-TCGATCAG-GATAACACTGCGAATCAAA-TTT
* * * * * * * **
7631829 ATG-TTCGAAAGTCTTA-GAAATCATGCTCGAAAGTCTTACAGAATCGATTAGGATAACACCGTA
1 ATGCTT-GGAGGTCTTACAAAATCATCCTAG-AGGTCTTACAGAATCGATTGGGATAACACCACA
* * * * *
7631892 ACTTGAAAA-ATAAAGAATCGATCGGGATAACAGC-ACGAATCGAATTT
64 A-GTCAAAAGATAAAGAATCGATCAGGATAACA-CTGCGAATCAAATTT
* * ** * * * * * * * *
7631939 ATGCCTAGAAATCTTACAGAATCATGCTCGGAGGTTTTACAAAATCAACTGAGATAACACCACAA
1 ATGCTTGGAGGTCTTACAAAATCATCCT-AGAGGTCTTACAGAATCGATTGGGATAACACCACAA
*
7632004 GTCGAAAGATAAAGAATCGATCAGGATAACACTGCGAAT-AGAATTT
65 GTCAAAAGATAAAGAATCGATCAGGATAACACTGCGAATCA-AATTT
*
7632050 ATGCTTGGAGGTCTTACAAAATTATACCTAGAGGTCTTACAGAATCGATT-GGATAACACCACAA
1 ATGCTTGGAGGTCTTACAAAATCAT-CCTAGAGGTCTTACAGAATCGATTGGGATAACACCACAA
7632114 GTCAAAAGATAAAGAATCGATCAGGATAACA-T-CGTAAATCAAATTT
65 GTCAAAAGATAAAGAATCGATCAGGATAACACTGCG--AATCAAATTT
* * * *
7632160 ATG-TCTGGAGATCTTA-GAAATCAT-GTATGAAGGTCTTACAGAATCGATTGGGATAATACCAC
1 ATGCT-TGGAGGTCTTACAAAATCATCCTA-G-AGGTCTTACAGAATCGATTGGGATAACACCAC
*
7632222 AAGTCAAAAGATAAAGAATCGATCAGGATAACA-TCGTGAATCAAATTT
63 AAGTCAAAAGATAAAGAATCGATCAGGATAACACT-GCGAATCAAATTT
7632270 ATGC
1 ATGC
7632274 CCGGCGGTCT
Statistics
Matches: 363, Mismatches: 59, Indels: 47
0.77 0.13 0.10
Matches are distributed among these distances:
107 2 0.01
108 3 0.01
109 27 0.07
110 143 0.39
111 164 0.45
112 24 0.07
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.24
Consensus pattern (110 bp):
ATGCTTGGAGGTCTTACAAAATCATCCTAGAGGTCTTACAGAATCGATTGGGATAACACCACAAG
TCAAAAGATAAAGAATCGATCAGGATAACACTGCGAATCAAATTT
Found at i:7632285 original size:110 final size:109
Alignment explanation
Indices: 7631723--7632314 Score: 568
Period size: 110 Copynumber: 5.3 Consensus size: 109
7631713 AATCATGCTC
* * * *
7631723 GGAGGTCTTACAGAATCATGCCTGGAGGTCTTACAGAATTGATTGGGATAACACCACAAGTCAAA
1 GGAGGTCTTAGA-AATCATGTC-GAAGGTCTTACAGAATCGATTGGGATAACACCACAAGTCAAA
* * *
7631788 AGATAAA-AACTCGATC-GAGATAACACCGCAAATCAAATTTTATG-TT
64 AGATAAAGAA-TCGATCAG-GATAACATCGCGAATCAAA-TTTATGCCT
* * * * ** * *
7631834 CGAAAGTCTTAGAAATCATGCTCGAAAGTCTTACAGAATCGATTAGGATAACACCGTAACTTGAA
1 -GGAGGTCTTAGAAATCATG-TCGAAGGTCTTACAGAATCGATTGGGATAACACCACAA-GTCAA
* * * *
7631899 AA-ATAAAGAATCGATCGGGATAACAGCACGAATCGAATTTATGCCT
63 AAGATAAAGAATCGATCAGGATAACATCGCGAATCAAATTTATGCCT
* ** * * * * * * * *
7631945 AGAAATCTTACAGAATCATGCTCGGAGGTTTTACAAAATCAACTGAGATAACACCACAAGTCGAA
1 GGAGGTCTTAGA-AATCATG-TCGAAGGTCTTACAGAATCGATTGGGATAACACCACAAGTCAAA
*
7632010 AGATAAAGAATCGATCAGGATAACA-CTGCGAAT-AGAATTTATGCTT
64 AGATAAAGAATCGATCAGGATAACATC-GCGAATCA-AATTTATGCCT
* * ** *
7632056 GGAGGTCTTACAAAATTATACCTAGAGGTCTTACAGAATCGATT-GGATAACACCACAAGTCAAA
1 GGAGGTCTTA-GAAATCATGTCGA-AGGTCTTACAGAATCGATTGGGATAACACCACAAGTCAAA
** *
7632120 AGATAAAGAATCGATCAGGATAACATCGTAAATCAAATTTATGTCT
64 AGATAAAGAATCGATCAGGATAACATCGCGAATCAAATTTATGCCT
* * *
7632166 GGAGATCTTAGAAATCATGTATGAAGGTCTTACAGAATCGATTGGGATAATACCACAAGTCAAAA
1 GGAGGTCTTAGAAATCATGT-CGAAGGTCTTACAGAATCGATTGGGATAACACCACAAGTCAAAA
* *
7632231 GATAAAGAATCGATCAGGATAACATCGTGAATCAAATTTATGCCC
65 GATAAAGAATCGATCAGGATAACATCGCGAATCAAATTTATGCCT
* * *
7632276 GGCGGTCTTAGAAATCATGTTCGGAGGTCTTACAAAATC
1 GGAGGTCTTAGAAATCATG-TCGAAGGTCTTACAGAATC
7632315 ATGCCCGGAG
Statistics
Matches: 391, Mismatches: 73, Indels: 34
0.79 0.15 0.07
Matches are distributed among these distances:
109 25 0.06
110 180 0.46
111 167 0.43
112 19 0.05
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.24
Consensus pattern (109 bp):
GGAGGTCTTAGAAATCATGTCGAAGGTCTTACAGAATCGATTGGGATAACACCACAAGTCAAAAG
ATAAAGAATCGATCAGGATAACATCGCGAATCAAATTTATGCCT
Found at i:7632316 original size:23 final size:23
Alignment explanation
Indices: 7632270--7632338 Score: 77
Period size: 23 Copynumber: 3.0 Consensus size: 23
7632260 AATCAAATTT
* *
7632270 ATGCCCGGCGGTCTTA-GAAATC
1 ATGCCCGGAGGTCTTACAAAATC
**
7632292 ATGTTCGGAGGTCTTACAAAATC
1 ATGCCCGGAGGTCTTACAAAATC
* *
7632315 ATGCCCGGAGGTTTTACAGAATC
1 ATGCCCGGAGGTCTTACAAAATC
7632338 A
1 A
7632339 ATTGGGATAA
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
22 13 0.34
23 25 0.66
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.26
Consensus pattern (23 bp):
ATGCCCGGAGGTCTTACAAAATC
Found at i:7632424 original size:133 final size:133
Alignment explanation
Indices: 7632190--7632725 Score: 580
Period size: 133 Copynumber: 4.1 Consensus size: 133
7632180 TCATGTATGA
*
7632190 AGGTCTTACAGAATCGATTGGGATAATACCACAAGTCAAAAGATAAAGAATCGATCAGGATAACA
1 AGGTCTTACAGAATCGATTGGGATAACACCACAAGTCAAAAGATAAAGAATCGATCAGGATAACA
* * ** * * * *
7632255 TCGTGAATCAAATTTATGCCCGGCGGTCTTAGAAATCATGTTCGGAGGTCTTACAAAATCATGCC
66 CCGCGAATCAAATTTATGCCCGAAGGTCTTAAAAATCATGTCCGGAGGTCTTACAGAATCATGCT
7632320 CGG
131 CGG
* * * * * *
7632323 AGGTTTTACAGAATCAATTGGGATAACATCACAAGTTAAAAGATAAAAAATCGATCGGGATAACA
1 AGGTCTTACAGAATCGATTGGGATAACACCACAAGTCAAAAGATAAAGAATCGATCAGGATAACA
* * * * *
7632388 CCGCGAATCAAAATTATGCCCGAAGGTTTTAAAAATCATGTTCGAAAGTCTTACAGAATCATGCT
66 CCGCGAATCAAATTTATGCCCGAAGGTCTTAAAAATCATGTCCGGAGGTCTTACAGAATCATGCT
**
7632453 TTG
131 CGG
* * * * *
7632456 AGGTCTTATAGAATTGATTGGGATAACACCACAAGTCAAACGATAAAGAATCGATTAGAATAACA
1 AGGTCTTACAGAATCGATTGGGATAACACCACAAGTCAAAAGATAAAGAATCGATCAGGATAACA
* * * * * * * * * *
7632521 CCGTGAATCGAAGTTATGTCTGAAGGTTTTAGAAATCATGCCCGGAGGTCCTACAGAAT--TGAT
66 CCGCGAATCAAATTTATGCCCGAAGGTCTTAAAAATCATGTCCGGAGGTCTTACAGAATCATGCT
7632584 CGG
131 CGG
* **** ** *
7632587 AGGTCTTACAGAATTGACCAAGATAACACCGTAAGTCAAAA-AT-AAGAATCGATCAAGATAACA
1 AGGTCTTACAGAATCGATTGGGATAACACCACAAGTCAAAAGATAAAGAATCGATCAGGATAACA
* * *
7632650 CCGCGAATCGAATTTATACCCGGAGGTCTTAAAAATCATG-CCTGGAGGTCTTACAGAATCATGT
66 CCGCGAATCAAATTTATGCCCGAAGGTCTTAAAAATCATGTCC-GGAGGTCTTACAGAATCATG-
7632714 CTC-G
129 CTCGG
7632718 AGGTCTTA
1 AGGTCTTA
7632726 GAAATCATGC
Statistics
Matches: 333, Mismatches: 66, Indels: 10
0.81 0.16 0.02
Matches are distributed among these distances:
128 2 0.01
129 64 0.19
130 2 0.01
131 48 0.14
132 2 0.01
133 215 0.65
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.25
Consensus pattern (133 bp):
AGGTCTTACAGAATCGATTGGGATAACACCACAAGTCAAAAGATAAAGAATCGATCAGGATAACA
CCGCGAATCAAATTTATGCCCGAAGGTCTTAAAAATCATGTCCGGAGGTCTTACAGAATCATGCT
CGG
Found at i:7632587 original size:21 final size:21
Alignment explanation
Indices: 7632563--7632603 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
7632553 AAATCATGCC
7632563 CGGAGGTCCTACAGAATTGAT
1 CGGAGGTCCTACAGAATTGAT
*
7632584 CGGAGGTCTTACAGAATTGA
1 CGGAGGTCCTACAGAATTGA
7632604 CCAAGATAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.24
Consensus pattern (21 bp):
CGGAGGTCCTACAGAATTGAT
Found at i:7632720 original size:23 final size:22
Alignment explanation
Indices: 7632671--7632758 Score: 108
Period size: 22 Copynumber: 4.0 Consensus size: 22
7632661 ATTTATACCC
*
7632671 GGAGGTCTTA-AAAATCATGCCT
1 GGAGGTCTTAGAGAATCATG-CT
*
7632693 GGAGGTCTTACAGAATCATGTCT
1 GGAGGTCTTAGAGAATCATG-CT
*
7632716 CGAGGTCTTAGA-AATCATGCTT
1 GGAGGTCTTAGAGAATCATGC-T
7632738 GGAGGTCTTAGAGAATCATGC
1 GGAGGTCTTAGAGAATCATGC
7632759 CCGAAGGTTT
Statistics
Matches: 58, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
21 1 0.02
22 29 0.50
23 28 0.48
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (22 bp):
GGAGGTCTTAGAGAATCATGCT
Found at i:7632741 original size:45 final size:44
Alignment explanation
Indices: 7632672--7632774 Score: 143
Period size: 45 Copynumber: 2.3 Consensus size: 44
7632662 TTTATACCCG
* *
7632672 GAGGTCTTAAAAATCATGCCTGGAGGTCTTACAGAATCATGTCTC
1 GAGGTCTTAGAAATCATGCCTGGAGGTCTTACAGAATCATG-CCC
* *
7632717 GAGGTCTTAGAAATCATGCTTGGAGGTCTTAGAGAATCATGCCC
1 GAGGTCTTAGAAATCATGCCTGGAGGTCTTACAGAATCATGCCC
*
7632761 GAAGGTTTTAGAAA
1 G-AGGTCTTAGAAA
7632775 ATTGATTGGG
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
44 3 0.06
45 49 0.94
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (44 bp):
GAGGTCTTAGAAATCATGCCTGGAGGTCTTACAGAATCATGCCC
Found at i:7632766 original size:23 final size:23
Alignment explanation
Indices: 7632668--7632772 Score: 108
Period size: 23 Copynumber: 4.7 Consensus size: 23
7632658 CGAATTTATA
*
7632668 CCCGGAGGTCTTA-AAAATCATG
1 CCCGGAGGTCTTAGAGAATCATG
* *
7632690 CCTGGAGGTCTTACAGAATCATG
1 CCCGGAGGTCTTAGAGAATCATG
*
7632713 TCTC-GAGGTCTTAGA-AATCATG
1 -CCCGGAGGTCTTAGAGAATCATG
**
7632735 CTTGGAGGTCTTAGAGAATCATG
1 CCCGGAGGTCTTAGAGAATCATG
* *
7632758 CCCGAAGGTTTTAGA
1 CCCGGAGGTCTTAGA
7632773 AAATTGATTG
Statistics
Matches: 69, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
21 2 0.03
22 30 0.43
23 36 0.52
24 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (23 bp):
CCCGGAGGTCTTAGAGAATCATG
Found at i:7632844 original size:178 final size:177
Alignment explanation
Indices: 7632608--7632932 Score: 433
Period size: 178 Copynumber: 1.8 Consensus size: 177
7632598 AATTGACCAA
* *
7632608 GATAACACCGTAAGTCAAAAATAAGAATCGATCAAGATAACACCGCGAATCGAATTTATACCCGG
1 GATAACACCGTAAGTCAAAAATAAGAATCGATCAAGATAACACCACGAATCGAATTTATACCCGA
* * * *
7632673 AGGTCTTAAAAATCATGC-CTGGAGGTCTTACAGAATCATGTCTCG-AGGTCTTAGA-AATCATG
66 AGATCTTAAAAATCATGCTC-GAACGTCTTACAGAATCATG-CCCGAAGGTCTTAGAGAATCATG
*
7632735 CTT-GGAGGTCTTAGAGAATCATGCCCGAAGGTTTTAGAAAATTGATTGG
129 -TTCGGAGGTCTTACAGAATCATGCCCGAAGGTTTTAGAAAATTGATTGG
* *** * **
7632784 GATAACACCGTAAGTTTAAAAATAAGAAATCGATTGGGATAACACCATGAATCGAATTTATATTC
1 GATAACACCGTAAG-TCAAAAATAAG-AATCGATCAAGATAACACCACGAATCGAATTTATACCC
* *
7632849 GAAGATCTTAAAAATCATGCTCGAACGTCTTATAGAATCATGCCCGAAGGTCTTAGAGAATTATG
64 GAAGATCTTAAAAATCATGCTCGAACGTCTTACAGAATCATGCCCGAAGGTCTTAGAGAATCATG
7632914 TTCGGAGGTCTTACAGAAT
129 TTCGGAGGTCTTACAGAAT
7632933 TGATTGAGAT
Statistics
Matches: 127, Mismatches: 16, Indels: 9
0.84 0.11 0.06
Matches are distributed among these distances:
176 14 0.11
177 13 0.10
178 78 0.61
179 22 0.17
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.27
Consensus pattern (177 bp):
GATAACACCGTAAGTCAAAAATAAGAATCGATCAAGATAACACCACGAATCGAATTTATACCCGA
AGATCTTAAAAATCATGCTCGAACGTCTTACAGAATCATGCCCGAAGGTCTTAGAGAATCATGTT
CGGAGGTCTTACAGAATCATGCCCGAAGGTTTTAGAAAATTGATTGG
Found at i:7632891 original size:23 final size:23
Alignment explanation
Indices: 7632847--7632932 Score: 84
Period size: 23 Copynumber: 3.8 Consensus size: 23
7632837 GAATTTATAT
* *
7632847 TCGAAGATCTTA-AAAATCATGC
1 TCGAAGGTCTTACAGAATCATGC
* *
7632869 TCGAACGTCTTATAGAATCATGC
1 TCGAAGGTCTTACAGAATCATGC
* * * *
7632892 CCGAAGGTCTTAGAGAATTATGT
1 TCGAAGGTCTTACAGAATCATGC
*
7632915 TCGGAGGTCTTACAGAAT
1 TCGAAGGTCTTACAGAAT
7632933 TGATTGAGAT
Statistics
Matches: 52, Mismatches: 11, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
22 10 0.19
23 42 0.81
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (23 bp):
TCGAAGGTCTTACAGAATCATGC
Found at i:7632944 original size:156 final size:155
Alignment explanation
Indices: 7632706--7633036 Score: 403
Period size: 156 Copynumber: 2.1 Consensus size: 155
7632696 GGTCTTACAG
* ** * *
7632706 AATCATGTCTCG-AGGTCTTAGAAATCATGCTTGGAGGTCTTAGAGAATCATGCCCGAAGGTTTT
1 AATCATG-CTCGAAAGTCTTAGAAATCATGCCCGAAGGTCTTAGAGAATCATGCCCGAAGGTCTT
* * * * * *
7632770 AGAAAATTGATTGGGATAACACCGTAAGTTTAAAAATAAGAAATCGATTGGGATAACACCATGAA
65 ACAAAATTGATTGAGATAACACCGTAAGTTGAAAAATAAAAAATCGATCGAGATAACACCATGAA
* **
7632835 TCGAATTTATATTCGAAGATCTTAAA
130 TCAAATTTATACCCGAAGATCTTAAA
* * * ** *
7632861 AATCATGCTCGAACGTCTTATAGAATCATGCCCGAAGGTCTTAGAGAATTATGTTCGGAGGTCTT
1 AATCATGCTCGAAAGTCTTAGA-AATCATGCCCGAAGGTCTTAGAGAATCATGCCCGAAGGTCTT
* **
7632926 ACAGAATTGATTGAGATAACACCGTAAGTTGAAAAATAAAAAATCGATCGAGATAACACTGTGAA
65 ACAAAATTGATTGAGATAACACCGTAAGTTGAAAAATAAAAAATCGATCGAGATAACACCATGAA
* * *
7632991 TCAAATTTATACCCGGAGGTCTTAGA
130 TCAAATTTATACCCGAAGATCTTAAA
7633017 AATCATGCTCGAAAGTCTTA
1 AATCATGCTCGAAAGTCTTA
7633037 CAAAATCGAC
Statistics
Matches: 148, Mismatches: 26, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
154 4 0.03
155 15 0.10
156 129 0.87
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (155 bp):
AATCATGCTCGAAAGTCTTAGAAATCATGCCCGAAGGTCTTAGAGAATCATGCCCGAAGGTCTTA
CAAAATTGATTGAGATAACACCGTAAGTTGAAAAATAAAAAATCGATCGAGATAACACCATGAAT
CAAATTTATACCCGAAGATCTTAAA
Found at i:7633185 original size:111 final size:110
Alignment explanation
Indices: 7632888--7633264 Score: 461
Period size: 110 Copynumber: 3.4 Consensus size: 110
7632878 TTATAGAATC
* * * * * * *
7632888 ATGCCCGAAGGTCTTAGAGAATTATGTTCGGAGGTCTTACAGAATTGATTGAGATAACACCGTAA
1 ATGCCCGGAGGTCTTA-AAAATCATGCTCGGAGGTCTTACAGAATCGATTGGGATAACACCATAA
* * * * *
7632953 GTTGAAAA-ATAAAAAATCGATCGAGATAACACTGTGAATCAAATTT
65 -ATCAAAAGATAAAGAATCGATCGAGATAACATTGTGAATCGAATTT
* * * * * * * *
7632999 ATACCCGGAGGTCTTAGAAATCATGCTCGAAAGTCTTACAAAATCGACTGGGATAACACCACAAG
1 ATGCCCGGAGGTCTTAAAAATCATGCTCGGAGGTCTTACAGAATCGATTGGGATAACACCATAAA
*
7633064 TCAAAAGATAAAGAATCGATCGAGATAACATTGTGAATCGATTTT
66 TCAAAAGATAAAGAATCGATCGAGATAACATTGTGAATCGAATTT
*
7633109 ATGCCCGGAGGTCTTACAAAATCATG-TCCGGATGTCTTACAGAATCGATTGGGATAACACCATA
1 ATGCCCGGAGGTCTTA-AAAATCATGCT-CGGAGGTCTTACAGAATCGATTGGGATAACACCATA
* ***
7633173 AATCAAAAGATAAAGAATCGATCGGGATAACATCACGAATCGAATTT
64 AATCAAAAGATAAAGAATCGATCGAGATAACATTGTGAATCGAATTT
*
7633220 ATGCTCGGAGGTCTTAAAAATCATGCTCGGAGGTCTTACAGAATC
1 ATGCCCGGAGGTCTTAAAAATCATGCTCGGAGGTCTTACAGAATC
7633265 ATGCCCAGAG
Statistics
Matches: 227, Mismatches: 35, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
109 5 0.02
110 112 0.49
111 110 0.48
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.25
Consensus pattern (110 bp):
ATGCCCGGAGGTCTTAAAAATCATGCTCGGAGGTCTTACAGAATCGATTGGGATAACACCATAAA
TCAAAAGATAAAGAATCGATCGAGATAACATTGTGAATCGAATTT
Found at i:7633265 original size:133 final size:133
Alignment explanation
Indices: 7633109--7633390 Score: 341
Period size: 133 Copynumber: 2.1 Consensus size: 133
7633099 AATCGATTTT
* * * * * *
7633109 ATGCCCGGAGGTCTTACAAAATCATGTCCGGATGTCTTACAGAATCGATTGGGATAACACCATAA
1 ATGCCCGGAGGTCTTACAAAATCATGCCCAGAGGTCTTACAAAATCGATTGAGATAACACCACAA
* * *
7633174 ATCAAAAGATAAAGAATCGATCGGGATAACATCACGAATCGAATTTATG-CTCGGAGGTCTTAAA
66 ATCAAAAGATAAAGAATCGATCAGGATAACACCACGAATCAAATTTATGCCT-GGAGGTCTTAAA
7633238 AATC
130 AATC
* * * *
7633242 ATGCTCGGAGGTCTTACAGAATCATGCCCAGAGGTTTTACAAAATCGATTGAGATAACTCCACAA
1 ATGCCCGGAGGTCTTACAAAATCATGCCCAGAGGTCTTACAAAATCGATTGAGATAACACCACAA
* * * * * *
7633307 GTTAAAAGATAAAGAATCGATTAGGATATCACCGCGAATCAAATTTATGCCTGGAGGTCTTGAAA
66 ATCAAAAGATAAAGAATCGATCAGGATAACACCACGAATCAAATTTATGCCTGGAGGTCTTAAAA
* *
7633372 GTT
131 ATC
* *
7633375 ATGCCTGAAGGTCTTA
1 ATGCCCGGAGGTCTTA
7633391 GAGATTATAC
Statistics
Matches: 124, Mismatches: 24, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
133 122 0.98
134 2 0.02
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (133 bp):
ATGCCCGGAGGTCTTACAAAATCATGCCCAGAGGTCTTACAAAATCGATTGAGATAACACCACAA
ATCAAAAGATAAAGAATCGATCAGGATAACACCACGAATCAAATTTATGCCTGGAGGTCTTAAAA
ATC
Found at i:7633268 original size:23 final size:23
Alignment explanation
Indices: 7633220--7633287 Score: 93
Period size: 23 Copynumber: 3.0 Consensus size: 23
7633210 AATCGAATTT
7633220 ATGCTCGGAGGTCTTA-AAAATC
1 ATGCTCGGAGGTCTTACAAAATC
*
7633242 ATGCTCGGAGGTCTTACAGAATC
1 ATGCTCGGAGGTCTTACAAAATC
* * *
7633265 ATGCCCAGAGGTTTTACAAAATC
1 ATGCTCGGAGGTCTTACAAAATC
7633288 GATTGAGATA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
22 16 0.40
23 24 0.60
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (23 bp):
ATGCTCGGAGGTCTTACAAAATC
Found at i:7633578 original size:121 final size:121
Alignment explanation
Indices: 7633388--7633605 Score: 382
Period size: 121 Copynumber: 1.8 Consensus size: 121
7633378 CCTGAAGGTC
*
7633388 TTAGAGATTATACCCGGAGGTTTTACAAATCTCAAAATCTTTGAATGCTCCTCATAATCAGAGGC
1 TTAGAGATTATACCCAGAGGTTTTACAAATCTCAAAATCTTTGAATGCTCCTCATAATCAGAGGC
*
7633453 AATGAAACTTTAAAAATTTTAAAATCTTTTAATCTTGAAAGTCTACGCAGAGGCTT
66 AATGAAACTTTAAAAATTTAAAAATCTTTTAATCTTGAAAGTCTACGCAGAGGCTT
** *
7633509 TTAGAGATTATGTCCAGAGGTTTTACAAATCTCAAAATCTTTGAATGCTCCTCTTAATCAGAGGC
1 TTAGAGATTATACCCAGAGGTTTTACAAATCTCAAAATCTTTGAATGCTCCTCATAATCAGAGGC
*
7633574 AATGAAACTTTAAAAATTTAAAAATGTTTTAA
66 AATGAAACTTTAAAAATTTAAAAATCTTTTAA
7633606 ACATGATTTT
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
121 91 1.00
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (121 bp):
TTAGAGATTATACCCAGAGGTTTTACAAATCTCAAAATCTTTGAATGCTCCTCATAATCAGAGGC
AATGAAACTTTAAAAATTTAAAAATCTTTTAATCTTGAAAGTCTACGCAGAGGCTT
Found at i:7633747 original size:41 final size:41
Alignment explanation
Indices: 7633661--7633765 Score: 115
Period size: 41 Copynumber: 2.6 Consensus size: 41
7633651 TTTCTAGGAA
* * *
7633661 GGTTCC-CTTTAAACAAAGGCTTTGAAATCTTGATTAAAATT
1 GGTTCCTC-TTAAACAGAGGCTTTGAAATCTTAATTAAAATC
* *
7633702 GGTTCCTCTTAAGCAGAGGCTTTGAAATCTTAATTGAGAA-C
1 GGTTCCTCTTAAACAGAGGCTTTGAAATCTTAATT-AAAATC
* *
7633743 GGTTCTTCTTAAACAGAGACTTT
1 GGTTCCTCTTAAACAGAGGCTTT
7633766 AAAACTTTAA
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
41 50 0.93
42 4 0.07
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.35
Consensus pattern (41 bp):
GGTTCCTCTTAAACAGAGGCTTTGAAATCTTAATTAAAATC
Found at i:7641712 original size:15 final size:15
Alignment explanation
Indices: 7641692--7641725 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
7641682 TTGATGATAA
*
7641692 CATGCTAACGTATGT
1 CATGCTAACGAATGT
*
7641707 CATGCTAATGAATGT
1 CATGCTAACGAATGT
7641722 CATG
1 CATG
7641726 TAAAATGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (15 bp):
CATGCTAACGAATGT
Found at i:7642211 original size:46 final size:46
Alignment explanation
Indices: 7642116--7642213 Score: 121
Period size: 46 Copynumber: 2.2 Consensus size: 46
7642106 TGAATTTGAA
* *
7642116 GATTTT-AGGGTTTCGGTTTTAAAAGTTTAAAGGTTTTGGATTTCG
1 GATTTTGAGGGTTTCGGATTTAAAAGTTTAAAGGATTTGGATTTCG
* *
7642161 GATTTTGAGGGATTTTGGATTTAAGAGTTT-AA-GATTTGAGATTTCG
1 GATTTTGAGGG-TTTCGGATTTAAAAGTTTAAAGGATTTG-GATTTCG
7642207 GATTTTG
1 GATTTTG
7642214 GGGGGGTTTC
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
45 11 0.24
46 20 0.43
47 15 0.33
ACGTcount: A:0.23, C:0.03, G:0.28, T:0.46
Consensus pattern (46 bp):
GATTTTGAGGGTTTCGGATTTAAAAGTTTAAAGGATTTGGATTTCG
Found at i:7642259 original size:16 final size:16
Alignment explanation
Indices: 7642215--7642299 Score: 75
Period size: 16 Copynumber: 5.2 Consensus size: 16
7642205 CGGATTTTGG
*
7642215 GGGGGTTTCGAATTTTA
1 GGGGGTTT-GGATTTTA
7642232 -GGGGTTTCGGATTTTA
1 GGGGGTTT-GGATTTTA
*
7642248 GGGGGTTTGGATTTAA
1 GGGGGTTTGGATTTTA
**
7642264 GGGATTTTGGATTTTTA
1 GGGGGTTTGGA-TTTTA
**
7642281 -GTAGTTTGGATTTTA
1 GGGGGTTTGGATTTTA
7642296 GGGG
1 GGGG
7642300 ATTTTAGATT
Statistics
Matches: 56, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
15 5 0.09
16 40 0.71
17 11 0.20
ACGTcount: A:0.16, C:0.02, G:0.38, T:0.44
Consensus pattern (16 bp):
GGGGGTTTGGATTTTA
Found at i:7642280 original size:33 final size:33
Alignment explanation
Indices: 7642200--7642303 Score: 95
Period size: 33 Copynumber: 3.2 Consensus size: 33
7642190 TAAGATTTGA
** * *
7642200 GATTTCGGATTTTGGGGGGGTTTCGAATTTTAGG
1 GATTTCGGATTTTTAGGGGGTTT-GGATTTAAGG
*
7642234 GGTTTCGGA-TTTTAGGGGGTTTGGATTTAAGG
1 GATTTCGGATTTTTAGGGGGTTTGGATTTAAGG
* ** *
7642266 GATTTTGGATTTTTA-GTAGTTTGGATTTTAGGG
1 GATTTCGGATTTTTAGGGGGTTTGGA-TTTAAGG
7642299 GATTT
1 GATTT
7642304 TAGATTTTAA
Statistics
Matches: 58, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
32 23 0.40
33 27 0.47
34 8 0.14
ACGTcount: A:0.16, C:0.03, G:0.36, T:0.45
Consensus pattern (33 bp):
GATTTCGGATTTTTAGGGGGTTTGGATTTAAGG
Found at i:7642304 original size:33 final size:34
Alignment explanation
Indices: 7642226--7642316 Score: 100
Period size: 33 Copynumber: 2.8 Consensus size: 34
7642216 GGGGTTTCGA
* *
7642226 ATTTTAGGGG-TTTCGGA-TTTTAGGGGGTTTGG
1 ATTTTAGGGGATTTTGGATTTTTAGGGAGTTTGG
* *
7642258 A-TTTAAGGGATTTTGGATTTTTA-GTAGTTTGG
1 ATTTTAGGGGATTTTGGATTTTTAGGGAGTTTGG
* *
7642290 ATTTTAGGGGATTTTAGATTTTAAGGG
1 ATTTTAGGGGATTTTGGATTTTTAGGG
7642317 TTTTAGAAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
31 7 0.15
32 15 0.32
33 24 0.51
34 1 0.02
ACGTcount: A:0.20, C:0.01, G:0.33, T:0.46
Consensus pattern (34 bp):
ATTTTAGGGGATTTTGGATTTTTAGGGAGTTTGG
Found at i:7642312 original size:32 final size:33
Alignment explanation
Indices: 7642226--7642312 Score: 99
Period size: 32 Copynumber: 2.7 Consensus size: 33
7642216 GGGGTTTCGA
* *
7642226 ATTTTAGGGG-TTTCGGATTTTAGGGGGTTTGG
1 ATTTTAGGGGATTTTGGATTTTAGGGAGTTTGG
* *
7642258 A-TTTAAGGGATTTTGGATTTTTA-GTAGTTTGG
1 ATTTTAGGGGATTTTGGA-TTTTAGGGAGTTTGG
*
7642290 ATTTTAGGGGATTTTAGATTTTA
1 ATTTTAGGGGATTTTGGATTTTA
7642313 AGGGTTTTAG
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
31 7 0.15
32 20 0.43
33 19 0.41
ACGTcount: A:0.20, C:0.01, G:0.31, T:0.48
Consensus pattern (33 bp):
ATTTTAGGGGATTTTGGATTTTAGGGAGTTTGG
Found at i:7642323 original size:16 final size:16
Alignment explanation
Indices: 7642226--7642320 Score: 77
Period size: 16 Copynumber: 5.9 Consensus size: 16
7642216 GGGGTTTCGA
* *
7642226 ATTTTAGGGGTTTCGG
1 ATTTTAAGGGTTTTGG
* *
7642242 ATTTTAGGGGGTTTGG
1 ATTTTAAGGGTTTTGG
7642258 A-TTTAAGGGATTTTGG
1 ATTTTAAGGG-TTTTGG
* *
7642274 ATTTTTAGTAG-TTTGG
1 ATTTTAAG-GGTTTTGG
* *
7642290 ATTTTAGGGGATTTTAG
1 ATTTTAAGGG-TTTTGG
7642307 ATTTTAAGGGTTTT
1 ATTTTAAGGGTTTT
7642321 AGAAAACTAG
Statistics
Matches: 63, Mismatches: 11, Indels: 10
0.75 0.13 0.12
Matches are distributed among these distances:
15 8 0.13
16 36 0.57
17 18 0.29
18 1 0.02
ACGTcount: A:0.19, C:0.01, G:0.32, T:0.48
Consensus pattern (16 bp):
ATTTTAAGGGTTTTGG
Found at i:7643326 original size:16 final size:15
Alignment explanation
Indices: 7643305--7643339 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
7643295 GGGTTCAAAG
7643305 TTTTCTGTTCTTCTTT
1 TTTTCTGTTCTT-TTT
*
7643321 TTTTCTTTTCTTTTT
1 TTTTCTGTTCTTTTT
7643336 TTTT
1 TTTT
7643340 GTTTTGTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.00, C:0.14, G:0.03, T:0.83
Consensus pattern (15 bp):
TTTTCTGTTCTTTTT
Found at i:7643336 original size:15 final size:15
Alignment explanation
Indices: 7643305--7643349 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
7643295 GGGTTCAAAG
*
7643305 TTTTCTGTTCTTCTTT
1 TTTTCTTTTCTT-TTT
7643321 TTTTCTTTTCTTTTT
1 TTTTCTTTTCTTTTT
* *
7643336 TTTTGTTTTGTTTT
1 TTTTCTTTTCTTTT
7643350 GTTGAAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 15 0.58
16 11 0.42
ACGTcount: A:0.00, C:0.11, G:0.07, T:0.82
Consensus pattern (15 bp):
TTTTCTTTTCTTTTT
Found at i:7644665 original size:81 final size:81
Alignment explanation
Indices: 7644530--7644691 Score: 279
Period size: 81 Copynumber: 2.0 Consensus size: 81
7644520 AGTTAAAATG
* **
7644530 CATGCTTACACTTACACACTAAGAATATATGGCCTGTGCTATGTGCGTGCTTAAATAACTGAAAA
1 CATGCTTACACTTACACACTAAGAATATATGGCCCGCACTATGTGCGTGCTTAAATAACTGAAAA
7644595 GTTTTGAATAAGTTAT
66 GTTTTGAATAAGTTAT
*
7644611 CATGCTTACACTTACATACTAAGAATATATGGCCCGCACTATGTGCGTGCTTAAATAACTGAAAA
1 CATGCTTACACTTACACACTAAGAATATATGGCCCGCACTATGTGCGTGCTTAAATAACTGAAAA
*
7644676 GTTTTGAATAGGTTAT
66 GTTTTGAATAAGTTAT
7644692 TTTATTTAAT
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
81 76 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (81 bp):
CATGCTTACACTTACACACTAAGAATATATGGCCCGCACTATGTGCGTGCTTAAATAACTGAAAA
GTTTTGAATAAGTTAT
Found at i:7645101 original size:25 final size:23
Alignment explanation
Indices: 7645067--7645116 Score: 73
Period size: 25 Copynumber: 2.1 Consensus size: 23
7645057 TTAATTCTCT
7645067 TACATTAGTGCAGATATGATTTTCC
1 TACATTAGTGCAGAT-TGA-TTTCC
*
7645092 TACATTAGTGCAGCTTGATTTCC
1 TACATTAGTGCAGATTGATTTCC
7645115 TA
1 TA
7645117 ATTTATTTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 7 0.29
24 3 0.12
25 14 0.58
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (23 bp):
TACATTAGTGCAGATTGATTTCC
Found at i:7648153 original size:62 final size:62
Alignment explanation
Indices: 7648085--7648273 Score: 182
Period size: 64 Copynumber: 3.0 Consensus size: 62
7648075 TAATTCTTTT
*
7648085 TAAAAAATTGGAA-TGATTATTGAAGGCTTTTTTTGGTATAAAATGCATTGAATAATCCCCTCA
1 TAAAAAA-TGGAAGTGATTATTGAAGGC-TTTTTTGGTAAAAAATGCATTGAATAATCCCCTCA
* * * * ** * **
7648148 TAAAAAATGGATAGGGGATTATTGAAGGCATTTTTGGTAGACAACACTTTGAATAATCATCTCA
1 TAAAAAATGGA-A-GTGATTATTGAAGGCTTTTTTGGTAAAAAATGCATTGAATAATCCCCTCA
* * ** * *
7648212 TAAAAAATAGAAGTGATTATTAAAGGCATTTTTTGCAAAAAAATGCCTTCAATAATCCCCTC
1 TAAAAAATGGAAGTGATTATTGAAGGC-TTTTTTGGTAAAAAATGCATTGAATAATCCCCTC
7648274 TAATTTTTTA
Statistics
Matches: 99, Mismatches: 23, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
62 17 0.17
63 32 0.32
64 37 0.37
65 13 0.13
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.33
Consensus pattern (62 bp):
TAAAAAATGGAAGTGATTATTGAAGGCTTTTTTGGTAAAAAATGCATTGAATAATCCCCTCA
Found at i:7648465 original size:63 final size:64
Alignment explanation
Indices: 7648372--7648494 Score: 160
Period size: 65 Copynumber: 1.9 Consensus size: 64
7648362 TGTTTTCTAC
*
7648372 AAAAAATACATTCAATAATTCTCCT-AAAAAATTGTAA-AAGATTATTGAAGGTATTTTTGGTAA
1 AAAAAATACATTCAATAATTCCCCTAAAAAAATT-TAAGAAGATTATTGAAGGTATTTTTGGTAA
* * * * *
7648435 AAAAAATACCTTTAATAATCCCCTCTAAAAAAATTTAAGAGGATTATTGAATGTATTTTT
1 AAAAAATACATTCAATAATTCCC-CTAAAAAAATTTAAGAAGATTATTGAAGGTATTTTT
7648495 TGCTTGAAAC
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
63 19 0.37
64 5 0.10
65 27 0.53
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.36
Consensus pattern (64 bp):
AAAAAATACATTCAATAATTCCCCTAAAAAAATTTAAGAAGATTATTGAAGGTATTTTTGGTAA
Found at i:7653049 original size:2 final size:2
Alignment explanation
Indices: 7653042--7653079 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
7653032 ATACCTCTCC
7653042 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7653080 TGAAAAGATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7653644 original size:41 final size:41
Alignment explanation
Indices: 7653587--7653669 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
7653577 CGAGAAAACA
7653587 TAAAAGAATACAAGATACCAATTGTATCACTTTCTCTTCCC
1 TAAAAGAATACAAGATACCAATTGTATCACTTTCTCTTCCC
7653628 TAAAAGAATACAAGATACCAATTGTATCACTTTCTCTTCCC
1 TAAAAGAATACAAGATACCAATTGTATCACTTTCTCTTCCC
7653669 T
1 T
7653670 TTTCCTTTAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (41 bp):
TAAAAGAATACAAGATACCAATTGTATCACTTTCTCTTCCC
Found at i:7658287 original size:21 final size:21
Alignment explanation
Indices: 7658231--7658287 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
7658221 GAAATGTGCA
* *
7658231 TGAAATGGAAGGAAATGACCT
1 TGAAATTGAAGGGAATGACCT
*
7658252 TGAAATTGAAAGGAATGACCT
1 TGAAATTGAAGGGAATGACCT
7658273 TGAAATTGAAGGGAA
1 TGAAATTGAAGGGAA
7658288 CGAGGTTGAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.44, C:0.07, G:0.28, T:0.21
Consensus pattern (21 bp):
TGAAATTGAAGGGAATGACCT
Found at i:7669293 original size:30 final size:30
Alignment explanation
Indices: 7669257--7669313 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
7669247 CTAGAGAAGG
* *
7669257 TATTTCTTGAGGGGCTATTTCCTGATGGGA
1 TATTTCTTGAAGAGCTATTTCCTGATGGGA
*
7669287 TATTTCTTGAAGAGCTATTTCTTGATG
1 TATTTCTTGAAGAGCTATTTCCTGATG
7669314 AGCTACTTCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.19, C:0.12, G:0.25, T:0.44
Consensus pattern (30 bp):
TATTTCTTGAAGAGCTATTTCCTGATGGGA
Found at i:7669316 original size:15 final size:15
Alignment explanation
Indices: 7669257--7669341 Score: 71
Period size: 15 Copynumber: 5.7 Consensus size: 15
7669247 CTAGAGAAGG
* *
7669257 TATTTCTTGAGGGGC
1 TATTTCTTGATGAGC
* * *
7669272 TATTTCCTGATGGGA
1 TATTTCTTGATGAGC
*
7669287 TATTTCTTGAAGAGC
1 TATTTCTTGATGAGC
7669302 TATTTCTTGATGAGC
1 TATTTCTTGATGAGC
* * * *
7669317 TACTTCCTGATAAGA
1 TATTTCTTGATGAGC
*
7669332 TACTTCTTGA
1 TATTTCTTGA
7669342 GGTGGTCCCC
Statistics
Matches: 57, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 57 1.00
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.41
Consensus pattern (15 bp):
TATTTCTTGATGAGC
Found at i:7669368 original size:30 final size:30
Alignment explanation
Indices: 7669334--7669463 Score: 199
Period size: 30 Copynumber: 4.3 Consensus size: 30
7669324 TGATAAGATA
* *
7669334 CTTCTTGAGGTGGTCCCCCTTGAAGGTATC
1 CTTCTTCAGGTGGTCCCTCTTGAAGGTATC
7669364 CTTCTTCAGGTGGTCCCTCTTGAAGGTATC
1 CTTCTTCAGGTGGTCCCTCTTGAAGGTATC
*
7669394 CTTC-TCGAGGTGGTCTCTCTTGAAGGTATC
1 CTTCTTC-AGGTGGTCCCTCTTGAAGGTATC
* *
7669424 CTTCTTCAGGTGGTGCCTCTAGAAGGTATC
1 CTTCTTCAGGTGGTCCCTCTTGAAGGTATC
7669454 CTTCTTCAGG
1 CTTCTTCAGG
7669464 GGGTTCAGTT
Statistics
Matches: 92, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
29 2 0.02
30 88 0.96
31 2 0.02
ACGTcount: A:0.14, C:0.25, G:0.25, T:0.35
Consensus pattern (30 bp):
CTTCTTCAGGTGGTCCCTCTTGAAGGTATC
Found at i:7672244 original size:24 final size:24
Alignment explanation
Indices: 7672215--7672262 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
7672205 TGAAAACAAA
*
7672215 TAGCACAAATACTACGTTTCTTAG
1 TAGCACAAATACTACATTTCTTAG
*
7672239 TAGCACAAATACTGCATTTCTTAG
1 TAGCACAAATACTACATTTCTTAG
7672263 AAGCTTAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.33
Consensus pattern (24 bp):
TAGCACAAATACTACATTTCTTAG
Found at i:7672601 original size:4 final size:4
Alignment explanation
Indices: 7672586--7672620 Score: 61
Period size: 4 Copynumber: 8.8 Consensus size: 4
7672576 CTTTTTCTTT
*
7672586 TATC TTTC TATC TATC TATC TATC TATC TATC TAT
1 TATC TATC TATC TATC TATC TATC TATC TATC TAT
7672621 ATATATATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.54
Consensus pattern (4 bp):
TATC
Found at i:7672704 original size:18 final size:18
Alignment explanation
Indices: 7672681--7672716 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
7672671 AAGATCTCTT
7672681 ATAAACACTATCAACCTA
1 ATAAACACTATCAACCTA
7672699 ATAAACACTATCAACCTA
1 ATAAACACTATCAACCTA
7672717 TCTAGAGCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.28, G:0.00, T:0.22
Consensus pattern (18 bp):
ATAAACACTATCAACCTA
Found at i:7672924 original size:62 final size:62
Alignment explanation
Indices: 7672787--7672949 Score: 206
Period size: 62 Copynumber: 2.6 Consensus size: 62
7672777 TCTCAAATTC
* * * * *
7672787 GACGTTTTCTAACATGAAAACATCGTAGTATTTATTTTC-ATGTTTGTTCTATATCAAATAG
1 GACGTTTTCTAACATGGAAACGTCATAGTATTTGTTTTCAATGTTTGTTCTATACCAAATAG
* * *
7672848 GACATTTTCTAACATGGAAACGTTATAGTATTTGTTTTCAAT-TTTTTTCCTACT-CCAAATAG
1 GACGTTTTCTAACATGGAAACGTCATAGTATTTGTTTTCAATGTTTGTT-CTA-TACCAAATAG
*
7672910 GACGTTTTCTAACATAGAAACGTCATAGTATTTGTTTTCA
1 GACGTTTTCTAACATGGAAACGTCATAGTATTTGTTTTCA
7672950 TTTAATGTTT
Statistics
Matches: 88, Mismatches: 11, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
61 38 0.43
62 49 0.56
63 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.42
Consensus pattern (62 bp):
GACGTTTTCTAACATGGAAACGTCATAGTATTTGTTTTCAATGTTTGTTCTATACCAAATAG
Found at i:7673997 original size:13 final size:14
Alignment explanation
Indices: 7673979--7674012 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
7673969 AGGGAACCGC
7673979 AAAGGAGGAAGA-G
1 AAAGGAGGAAGACG
7673992 AAAGGA-GAAGACG
1 AAAGGAGGAAGACG
7674005 AAAGGAGG
1 AAAGGAGG
7674013 TTAATTGGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 5 0.26
13 13 0.68
14 1 0.05
ACGTcount: A:0.53, C:0.03, G:0.44, T:0.00
Consensus pattern (14 bp):
AAAGGAGGAAGACG
Found at i:7674356 original size:11 final size:11
Alignment explanation
Indices: 7674340--7674364 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7674330 GACCGTTCCT
7674340 TTTTTTTTTTC
1 TTTTTTTTTTC
7674351 TTTTTTTTTTC
1 TTTTTTTTTTC
7674362 TTT
1 TTT
7674365 CTAAGGACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:7674941 original size:21 final size:21
Alignment explanation
Indices: 7674917--7674957 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7674907 TAGCATATAA
7674917 ACATAAAAATTAATAAAATTT
1 ACATAAAAATTAATAAAATTT
* * *
7674938 ACATTATAATTAATATAATT
1 ACATAAAAATTAATAAAATT
7674958 GTATATTTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (21 bp):
ACATAAAAATTAATAAAATTT
Found at i:7677144 original size:30 final size:30
Alignment explanation
Indices: 7677110--7677215 Score: 106
Period size: 30 Copynumber: 3.5 Consensus size: 30
7677100 TTAAAAATTT
* *
7677110 TTTTAATTTTTAATTTGTATTCAAATAAGC
1 TTTTAATTTTTAATTTATATTCAAATAAAC
* * * *
7677140 TTTTAACTTTTAATTTATATCCAGATAAAT
1 TTTTAATTTTTAATTTATATTCAAATAAAC
* *
7677170 TTTTAATCTTTAATTTATATTTAAATAAA-
1 TTTTAATTTTTAATTTATATTCAAATAAAC
* *
7677199 TCATTAATCTTTAATTT
1 T-TTTAATTTTTAATTT
7677216 GTACATCGTA
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
29 1 0.02
30 62 0.98
ACGTcount: A:0.36, C:0.08, G:0.03, T:0.54
Consensus pattern (30 bp):
TTTTAATTTTTAATTTATATTCAAATAAAC
Found at i:7680201 original size:2 final size:2
Alignment explanation
Indices: 7680194--7680228 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
7680184 TTTCAGAACT
*
7680194 TA TA TA TA TA TA TA TA TA TG TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7680229 GAAAAGTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7682887 original size:7 final size:6
Alignment explanation
Indices: 7682877--7682924 Score: 60
Period size: 6 Copynumber: 7.7 Consensus size: 6
7682867 AACAAAATAG
* *
7682877 TTTTTA TTTTTA TTTTTA TTTGTA TTTGTA TTTCTTA TTTTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT-TTA -TTTTTA TTTT
7682925 CCAAAGAATT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
6 30 0.79
7 5 0.13
8 3 0.08
ACGTcount: A:0.15, C:0.02, G:0.04, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:7683766 original size:12 final size:12
Alignment explanation
Indices: 7683751--7683775 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7683741 TATATATATA
7683751 TGCGTGTGTGTG
1 TGCGTGTGTGTG
7683763 TGCGTGTGTGTG
1 TGCGTGTGTGTG
7683775 T
1 T
7683776 ATATATATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.48, T:0.44
Consensus pattern (12 bp):
TGCGTGTGTGTG
Found at i:7684405 original size:12 final size:11
Alignment explanation
Indices: 7684386--7684424 Score: 55
Period size: 12 Copynumber: 3.6 Consensus size: 11
7684376 TCCTTTTTTT
7684386 TTTTTTTTAAC
1 TTTTTTTTAAC
7684397 TTTTGTTTTAAC
1 TTTT-TTTTAAC
7684409 TTTTTTTT--C
1 TTTTTTTTAAC
7684418 TTTTTTT
1 TTTTTTT
7684425 CTTAATTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 8 0.30
11 8 0.30
12 11 0.41
ACGTcount: A:0.10, C:0.08, G:0.03, T:0.79
Consensus pattern (11 bp):
TTTTTTTTAAC
Found at i:7684669 original size:9 final size:9
Alignment explanation
Indices: 7684655--7684679 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
7684645 AAATGGTTTA
7684655 TGAATTGAT
1 TGAATTGAT
7684664 TGAATTGAT
1 TGAATTGAT
7684673 TGAATTG
1 TGAATTG
7684680 GAATGTGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (9 bp):
TGAATTGAT
Found at i:7685221 original size:24 final size:24
Alignment explanation
Indices: 7685185--7685240 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
7685175 TGTGGTGGTT
7685185 CACCACACCGAAGCATTCTAAATA
1 CACCACACCGAAGCATTCTAAATA
* * *
7685209 CACTACACCGAAGCCTTCTAAGTA
1 CACCACACCGAAGCATTCTAAATA
7685233 CACCACAC
1 CACCACAC
7685241 AAACCTTTCT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.38, C:0.38, G:0.09, T:0.16
Consensus pattern (24 bp):
CACCACACCGAAGCATTCTAAATA
Found at i:7688711 original size:31 final size:30
Alignment explanation
Indices: 7688676--7688733 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 30
7688666 TATGCTTTAT
* *
7688676 ATATTGAACATGTTATCTAATGAGATATATC
1 ATATTGAACAAGTAATCTAATG-GATATATC
*
7688707 ATATTGAATAAGTAATCTAATGGATAT
1 ATATTGAACAAGTAATCTAATGGATAT
7688734 TTTTAAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 5 0.21
31 19 0.79
ACGTcount: A:0.41, C:0.07, G:0.14, T:0.38
Consensus pattern (30 bp):
ATATTGAACAAGTAATCTAATGGATATATC
Found at i:7691145 original size:50 final size:50
Alignment explanation
Indices: 7691067--7691163 Score: 124
Period size: 50 Copynumber: 1.9 Consensus size: 50
7691057 AAATAAAAAA
* * **
7691067 GAAAAAATAATTTCTAAATAGCCTCAAATGGTGTAAAATTTAAAAATTCT
1 GAAAAAAAAATTTCTAAATAGCCTCAAATAGTAAAAAATTTAAAAATTCT
* *
7691117 GAAAAAAAAATTTCTAAATTGACC-CAAATAGTAAAAAATTTAGAAAT
1 GAAAAAAAAATTTCTAAATAG-CCTCAAATAGTAAAAAATTTAAAAAT
7691164 CCAACAAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
50 38 0.95
51 2 0.05
ACGTcount: A:0.53, C:0.09, G:0.09, T:0.29
Consensus pattern (50 bp):
GAAAAAAAAATTTCTAAATAGCCTCAAATAGTAAAAAATTTAAAAATTCT
Found at i:7695265 original size:19 final size:18
Alignment explanation
Indices: 7695237--7695278 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
7695227 ATAAAAAATT
*
7695237 AAAAATAAAAGAATG-GAA
1 AAAAATAAAA-AAAGAGAA
7695255 AAAAATGAAAAAAAGAGAA
1 AAAAAT-AAAAAAAGAGAA
7695274 AAAAA
1 AAAAA
7695279 AAGACTCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.79, C:0.00, G:0.14, T:0.07
Consensus pattern (18 bp):
AAAAATAAAAAAAGAGAA
Found at i:7695281 original size:34 final size:32
Alignment explanation
Indices: 7695220--7695282 Score: 81
Period size: 34 Copynumber: 1.9 Consensus size: 32
7695210 ACTAATGGAT
** *
7695220 GAAAAAAATAAAAAATTAAAAATAAAAGAATG
1 GAAAAAAATAAAAAAAGAAAAAAAAAAGAATG
7695252 GAAAAAAATGAAAAAAAGAGAAAAAAAAAGA
1 GAAAAAAAT-AAAAAAAGA-AAAAAAAAAGA
7695283 CTCAAATTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 9 0.35
33 7 0.27
34 10 0.38
ACGTcount: A:0.78, C:0.00, G:0.13, T:0.10
Consensus pattern (32 bp):
GAAAAAAATAAAAAAAGAAAAAAAAAAGAATG
Found at i:7696133 original size:62 final size:63
Alignment explanation
Indices: 7695978--7696198 Score: 234
Period size: 63 Copynumber: 3.4 Consensus size: 63
7695968 ATCAGTGGGC
* *
7695978 AAAATTTGTTCTAAAATGGTTAGTGTTGAGAAACCTATGAGTGGTGACCAAGTGATGAAGGAT
1 AAAATTTGTTCTGAAATGGTTAGTGCTGAGAAACCTATGAGTGGTGACCAAGTGATGAAGGAT
*
7696041 AAAATTTCTT-TCGAAATGGTTAGTGCTGAGAAACCTAT-AGGTGGTGACCAAGTGATG-AGGAT
1 AAAATTTGTTCT-GAAATGGTTAGTGCTGAGAAACCTATGA-GTGGTGACCAAGTGATGAAGGAT
* * *
7696103 AAAATTTGTTCTGAAATAGCTAGTGCTGAGAATGAGAAGCCTATAAGTGGTGACCAAGTGATAGA
1 AAAATTTGTTCTGAAATGGTTAGTGCT--G-A-GA-AA-CCTATGAGTGGTGACCAAGTGAT-GA
* *
7696168 A-AAC
59 AGGAT
* * *
7696172 AGAATTTGTTTTGAAATGGTGAGTGCT
1 AAAATTTGTTCTGAAATGGTTAGTGCT
7696199 AAAAAGGCTT
Statistics
Matches: 133, Mismatches: 13, Indels: 18
0.81 0.08 0.11
Matches are distributed among these distances:
62 29 0.22
63 51 0.38
64 1 0.01
65 1 0.01
66 2 0.02
67 2 0.02
68 21 0.16
69 25 0.19
70 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (63 bp):
AAAATTTGTTCTGAAATGGTTAGTGCTGAGAAACCTATGAGTGGTGACCAAGTGATGAAGGAT
Found at i:7696559 original size:21 final size:21
Alignment explanation
Indices: 7696535--7696590 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
7696525 ATAAAGTTTT
*
7696535 AAATGAGAATTTTTGAGTCTC
1 AAATGAGAATCTTTGAGTCTC
*
7696556 AAATGAGAATCTTTGAGTTTC
1 AAATGAGAATCTTTGAGTCTC
7696577 AAATGAGAATCTTT
1 AAATGAGAATCTTT
7696591 AAGATGTGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.38
Consensus pattern (21 bp):
AAATGAGAATCTTTGAGTCTC
Found at i:7696747 original size:20 final size:20
Alignment explanation
Indices: 7696722--7696762 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
7696712 CCTAAATTTG
*
7696722 TCAAATGTGAACCTTTGAAC
1 TCAAATGAGAACCTTTGAAC
*
7696742 TCAAATGAGAAGCTTTGAAC
1 TCAAATGAGAACCTTTGAAC
7696762 T
1 T
7696763 TTTGGATGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (20 bp):
TCAAATGAGAACCTTTGAAC
Found at i:7696866 original size:16 final size:17
Alignment explanation
Indices: 7696833--7696867 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
7696823 AATTTGCAAA
7696833 TGCAAATATTGAAATCT
1 TGCAAATATTGAAATCT
*
7696850 TGCAAAT-TTGAATTCT
1 TGCAAATATTGAAATCT
7696866 TG
1 TG
7696868 TGAAACTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.40
Consensus pattern (17 bp):
TGCAAATATTGAAATCT
Found at i:7697086 original size:41 final size:41
Alignment explanation
Indices: 7697029--7697359 Score: 380
Period size: 41 Copynumber: 8.0 Consensus size: 41
7697019 TATAATTGTC
* * * *
7697029 GAGGAGCCTTTTATTTTTCAAAGTTATGGTGCCTTTGTTTA
1 GAGGAGCATTTTATTTTTCAAAGTTGTGGTGCCTCTATTTA
* * *
7697070 GAGGAGCAATTTATTTTTCAAAGCTGTGGTACCTCTATTTA
1 GAGGAGCATTTTATTTTTCAAAGTTGTGGTGCCTCTATTTA
* * *
7697111 GAGGATCATTTTGTTTTTCCAAAGTTGTGATGCCTCTATTTA
1 GAGGAGCATTTTATTTTT-CAAAGTTGTGGTGCCTCTATTTA
* *
7697153 GAGGAGCATTTTATTTTTTCAAAGTTATGGTGCCTTTATTTA
1 GAGGAGCATTTTA-TTTTTCAAAGTTGTGGTGCCTCTATTTA
** *
7697195 GATAAGCATTTTA-TTTTCAAAAGTTGTGGTGCCTCTGTTTA
1 GAGGAGCATTTTATTTTTC-AAAGTTGTGGTGCCTCTATTTA
* * *
7697236 GAGGAGCAATTTA-TTTTCAAAGTTTGTGGTACCTCTGTTTA
1 GAGGAGCATTTTATTTTTCAAAG-TTGTGGTGCCTCTATTTA
* *
7697277 AAGGAGCATTTT-TTTTTCTAAAGTTGTAGTGCCTCTATTTA
1 GAGGAGCATTTTATTTTTC-AAAGTTGTGGTGCCTCTATTTA
* * *
7697318 GATGAGCATTTTATTTTTCAAAAGTTATGGTGCCTTTATTTA
1 GAGGAGCATTTTATTTTTC-AAAGTTGTGGTGCCTCTATTTA
7697360 AAAGAGCTTA
Statistics
Matches: 245, Mismatches: 38, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
40 9 0.04
41 140 0.57
42 91 0.37
43 5 0.02
ACGTcount: A:0.24, C:0.12, G:0.19, T:0.45
Consensus pattern (41 bp):
GAGGAGCATTTTATTTTTCAAAGTTGTGGTGCCTCTATTTA
Found at i:7697167 original size:83 final size:82
Alignment explanation
Indices: 7697029--7697359 Score: 362
Period size: 83 Copynumber: 4.0 Consensus size: 82
7697019 TATAATTGTC
* * * * *
7697029 GAGGAGCCTTTTATTTTT-CAAAGTTATGGTGCCTTTGTTTAGAGGAGCAATTTATTTTTCAAAG
1 GAGGAGCATTTT-TTTTTCCAAAGTTGTGATGCCTCTATTTAGAGGAGCAATTTATTTTTCAAAG
*
7697093 CTGTGGTACCTCTATTTA
65 TTGTGGTACCTCTATTTA
* *
7697111 GAGGATCATTTTGTTTTTCCAAAGTTGTGATGCCTCTATTTAGAGGAGCATTTTATTTTTTCAAA
1 GAGGAGCATTTT-TTTTTCCAAAGTTGTGATGCCTCTATTTAGAGGAGCAATTTA-TTTTTCAAA
* * *
7697176 GTTATGGTGCCTTTATTTA
64 GTTGTGGTACCTCTATTTA
** * * * *
7697195 GATAAGCATTTTATTTTCAAAAGTTGTGGTGCCTCTGTTTAGAGGAGCAATTTA-TTTTCAAAGT
1 GAGGAGCATTTTTTTTTCCAAAGTTGTGATGCCTCTATTTAGAGGAGCAATTTATTTTTCAAAG-
*
7697259 TTGTGGTACCTCTGTTTA
65 TTGTGGTACCTCTATTTA
* * * *
7697277 AAGGAGCATTTTTTTTTCTAAAGTTGT-AGTGCCTCTATTTAGATGAGCATTTTATTTTTCAAAA
1 GAGGAGCATTTTTTTTTCCAAAGTTGTGA-TGCCTCTATTTAGAGGAGCAATTTATTTTTC-AAA
* * *
7697341 GTTATGGTGCCTTTATTTA
64 GTTGTGGTACCTCTATTTA
7697360 AAAGAGCTTA
Statistics
Matches: 206, Mismatches: 37, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
81 9 0.04
82 73 0.35
83 87 0.42
84 37 0.18
ACGTcount: A:0.24, C:0.12, G:0.19, T:0.45
Consensus pattern (82 bp):
GAGGAGCATTTTTTTTTCCAAAGTTGTGATGCCTCTATTTAGAGGAGCAATTTATTTTTCAAAGT
TGTGGTACCTCTATTTA
Found at i:7697634 original size:26 final size:24
Alignment explanation
Indices: 7697605--7697657 Score: 79
Period size: 24 Copynumber: 2.1 Consensus size: 24
7697595 AAAAAAATAA
7697605 AAAATAAGAAGAGTTTAAGTGGGATT
1 AAAATAAG-A-AGTTTAAGTGGGATT
*
7697631 AAAATTAGAAGTTTAAGTGGGATT
1 AAAATAAGAAGTTTAAGTGGGATT
7697655 AAA
1 AAA
7697658 TTTTGGAAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 18 0.69
25 1 0.04
26 7 0.27
ACGTcount: A:0.47, C:0.00, G:0.25, T:0.28
Consensus pattern (24 bp):
AAAATAAGAAGTTTAAGTGGGATT
Found at i:7699003 original size:13 final size:13
Alignment explanation
Indices: 7698987--7699011 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7698977 TTTTTAATTA
7698987 AAAAATAAAAAAT
1 AAAAATAAAAAAT
7699000 AAAAATAAAAAA
1 AAAAATAAAAAA
7699012 ATTTGGTTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:7704021 original size:25 final size:25
Alignment explanation
Indices: 7703987--7704037 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
7703977 GGGAAAAAAC
7703987 AAGAGATGTACACTTGAGATATGAG
1 AAGAGATGTACACTTGAGATATGAG
7704012 AAGAGATGTACACTTGAGATATGAG
1 AAGAGATGTACACTTGAGATATGAG
7704037 A
1 A
7704038 GTGAAACAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.41, C:0.08, G:0.27, T:0.24
Consensus pattern (25 bp):
AAGAGATGTACACTTGAGATATGAG
Found at i:7709732 original size:25 final size:25
Alignment explanation
Indices: 7709675--7709728 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 25
7709665 TAAAATAAAA
* *
7709675 TAAATTATATATATTTTTATTTTTAT
1 TAAATT-TATATATATATATTTTTAT
7709701 TAAATTTATATATATATA-TTTTAT
1 TAAATTTATATATATATATTTTTAT
7709725 TAAA
1 TAAA
7709729 ATTTTAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 10 0.38
25 10 0.38
26 6 0.23
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (25 bp):
TAAATTTATATATATATATTTTTAT
Found at i:7712486 original size:18 final size:18
Alignment explanation
Indices: 7712430--7712477 Score: 89
Period size: 18 Copynumber: 2.7 Consensus size: 18
7712420 AAGGTGTAAG
7712430 GCATAAAGGG-ATTTCAT
1 GCATAAAGGGCATTTCAT
7712447 GCATAAAGGGCATTTCAT
1 GCATAAAGGGCATTTCAT
7712465 GCATAAAGGGCAT
1 GCATAAAGGGCAT
7712478 GCCATGCATG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
17 10 0.33
18 20 0.67
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (18 bp):
GCATAAAGGGCATTTCAT
Found at i:7714501 original size:24 final size:24
Alignment explanation
Indices: 7714482--7714532 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
7714472 TAAATATCAC
7714482 TATTTTGAATATTATTAATAATAAA
1 TATTTTGAATATTATTAAT-ATAAA
*
7714507 TATTTTTAATATT-TTAATAATAAA
1 TATTTTGAATATTATTAAT-ATAAA
7714531 TA
1 TA
7714533 GTATTATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 13 0.52
25 12 0.48
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (24 bp):
TATTTTGAATATTATTAATATAAA
Found at i:7714970 original size:23 final size:25
Alignment explanation
Indices: 7714921--7714970 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 25
7714911 TACAGTACTA
*
7714921 TTTCTAATTTTTTAATAATAAATAT
1 TTTCTAATATTTTAATAATAAATAT
7714946 TTTC-AATATTTTAATAA-AAATAT
1 TTTCTAATATTTTAATAATAAATAT
7714969 TT
1 TT
7714971 ATTAATTATG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 8 0.33
24 12 0.50
25 4 0.17
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (25 bp):
TTTCTAATATTTTAATAATAAATAT
Found at i:7720604 original size:21 final size:21
Alignment explanation
Indices: 7720580--7720622 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
7720570 TTATTATCCG
7720580 CCTCAAATGTATCCTCCACCT
1 CCTCAAATGTATCCTCCACCT
7720601 CCTCAAATGTATCCTCCACCT
1 CCTCAAATGTATCCTCCACCT
7720622 C
1 C
7720623 AAATGTACCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.44, G:0.05, T:0.28
Consensus pattern (21 bp):
CCTCAAATGTATCCTCCACCT
Found at i:7720624 original size:18 final size:18
Alignment explanation
Indices: 7720580--7720666 Score: 88
Period size: 18 Copynumber: 4.7 Consensus size: 18
7720570 TTATTATCCG
7720580 CCTCAAATGTATCCTCCA
1 CCTCAAATGTATCCTCCA
7720598 CCTCCTCAAATGTATCCTCCA
1 ---CCTCAAATGTATCCTCCA
*
7720619 CCTCAAATGTA-CCAT-TA
1 CCTCAAATGTATCC-TCCA
* *
7720636 CCACAAATGTATCCCCCA
1 CCTCAAATGTATCCTCCA
*
7720654 CCACAAATGTATC
1 CCTCAAATGTATC
7720667 ATCCTCAAAT
Statistics
Matches: 59, Mismatches: 4, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
17 13 0.22
18 28 0.47
21 18 0.31
ACGTcount: A:0.31, C:0.38, G:0.06, T:0.25
Consensus pattern (18 bp):
CCTCAAATGTATCCTCCA
Found at i:7747091 original size:81 final size:81
Alignment explanation
Indices: 7746956--7747117 Score: 315
Period size: 81 Copynumber: 2.0 Consensus size: 81
7746946 TCTTTCATTA
*
7746956 AACATAAAACATCTTTAAAAGATAAGATGTCAAATGATCTTTTGATTTTATCAATATCGATTTTA
1 AACATAAAACATCTTTAAAAGATAAGATGTCAAATGATCTTTTCATTTTATCAATATCGATTTTA
7747021 AAGCTTTATTATGTCT
66 AAGCTTTATTATGTCT
7747037 AACATAAAACATCTTTAAAAGATAAGATGTCAAATGATCTTTTCATTTTATCAATATCGATTTTA
1 AACATAAAACATCTTTAAAAGATAAGATGTCAAATGATCTTTTCATTTTATCAATATCGATTTTA
7747102 AAGCTTTATTATGTCT
66 AAGCTTTATTATGTCT
7747118 TACTCTATGG
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.41
Consensus pattern (81 bp):
AACATAAAACATCTTTAAAAGATAAGATGTCAAATGATCTTTTCATTTTATCAATATCGATTTTA
AAGCTTTATTATGTCT
Found at i:7749213 original size:17 final size:17
Alignment explanation
Indices: 7749191--7749232 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
7749181 GCTTTTAATT
*
7749191 AAATAAAAAAAAATTAA
1 AAATAAAAAAAAATAAA
*
7749208 AAATAAAGAAAAATAAA
1 AAATAAAAAAAAATAAA
7749225 AACATAAA
1 AA-ATAAA
7749233 CATTCAGATC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 17 0.77
18 5 0.23
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.14
Consensus pattern (17 bp):
AAATAAAAAAAAATAAA
Found at i:7755966 original size:121 final size:120
Alignment explanation
Indices: 7755824--7756047 Score: 288
Period size: 121 Copynumber: 1.9 Consensus size: 120
7755814 AATTTTTACC
* *
7755824 ATTACAAATATGATAAAAATTTTCAAAACAACTTTGTTTGTTATTGGATAAAATATTAAACAAAT
1 ATTACAAATATGATAAAAATTTTCAAAACAAATTTGTTTGTTATTAGATAAAATATTAAA-AAAT
7755889 AAATAAAACAA-TAGTATTAAAAAATCATTGCAAATAAAAAACTTTTTGCTACAATT
65 AAATAAAACAACTA-TATTAAAAAATCATTGCAAATAAAAAACTTTTTGCTACAATT
* *** * * *
7755945 ATTACAAATATGATGAAAATTTTTGTAACAAATTTTTTTGTTGTTATATAAAATATTAAAAAATA
1 ATTACAAATATGATAAAAATTTTCAAAACAAATTTGTTTGTTATTAGATAAAATATTAAAAAATA
** * * * *
7756010 GCTTAAACAACTATATTGAAAAATTATTGTAAATAAAA
66 AATAAAACAACTATATTAAAAAATCATTGCAAATAAAA
7756048 TAAGATTTCG
Statistics
Matches: 87, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
120 34 0.39
121 53 0.61
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (120 bp):
ATTACAAATATGATAAAAATTTTCAAAACAAATTTGTTTGTTATTAGATAAAATATTAAAAAATA
AATAAAACAACTATATTAAAAAATCATTGCAAATAAAAAACTTTTTGCTACAATT
Found at i:7761021 original size:20 final size:19
Alignment explanation
Indices: 7761000--7761067 Score: 58
Period size: 17 Copynumber: 3.8 Consensus size: 19
7760990 TTTTGGTAAT
7761000 TTTATTT-TTTATATGATAA
1 TTTATTTATTTAT-TGATAA
7761019 TTTATTTATTTATTGAT--
1 TTTATTTATTTATTGATAA
* * *
7761036 TTTGTTT-TAT-TTGATTA
1 TTTATTTATTTATTGATAA
7761053 TTTATTTATTT-TTGA
1 TTTATTTATTTATTGA
7761068 AATATTTTCA
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
15 5 0.12
16 2 0.05
17 12 0.29
18 6 0.15
19 11 0.27
20 5 0.12
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (19 bp):
TTTATTTATTTATTGATAA
Found at i:7762905 original size:43 final size:43
Alignment explanation
Indices: 7762825--7762907 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
7762815 AACTTTGTGC
* * * *
7762825 ATTTGCATTATTTCAATTGTCATATTACTTGTTTATTTAACTT
1 ATTTGCATCATTTCAATTGTCATATGACTTATGTATTTAACTT
* **
7762868 ATTTGTATCATTTCAATTGTCATATGGTTTATGTATTTAA
1 ATTTGCATCATTTCAATTGTCATATGACTTATGTATTTAA
7762908 TTTTGTGCAT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.27, C:0.10, G:0.10, T:0.54
Consensus pattern (43 bp):
ATTTGCATCATTTCAATTGTCATATGACTTATGTATTTAACTT
Found at i:7768246 original size:18 final size:18
Alignment explanation
Indices: 7768225--7768284 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 18
7768215 AAATGAAGTG
7768225 AAAAAAATAAAAAATGAT
1 AAAAAAATAAAAAATGAT
**
7768243 -AAAATGTGAAAAAATGAT
1 AAAAAAAT-AAAAAATGAT
*
7768261 AAAAGAAA-AAAAAAGGA-
1 AAAA-AAATAAAAAATGAT
7768278 AAAAAAA
1 AAAAAAA
7768285 GAAAGACTCT
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
16 3 0.09
17 9 0.26
18 18 0.53
19 3 0.09
20 1 0.03
ACGTcount: A:0.77, C:0.00, G:0.12, T:0.12
Consensus pattern (18 bp):
AAAAAAATAAAAAATGAT
Found at i:7768831 original size:22 final size:22
Alignment explanation
Indices: 7768803--7768846 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
7768793 ATTTTTTATC
*
7768803 CTTAATTATAGGGATACAAATA
1 CTTAATTATAGAGATACAAATA
*
7768825 CTTAATTCTAGAGATACAAATA
1 CTTAATTATAGAGATACAAATA
7768847 TAAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTATAGAGATACAAATA
Found at i:7768858 original size:22 final size:22
Alignment explanation
Indices: 7768806--7768858 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
7768796 TTTTATCCTT
* *
7768806 AATTATAGGGATACAAATACTT
1 AATTATAGAGATACAAATACTA
*
7768828 AATTCTAGAGATACAAATA-TA
1 AATTATAGAGATACAAATACTA
7768849 AATATATAGA
1 AAT-TATAGA
7768859 TTACAAGATT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 4 0.15
22 22 0.85
ACGTcount: A:0.51, C:0.08, G:0.11, T:0.30
Consensus pattern (22 bp):
AATTATAGAGATACAAATACTA
Found at i:7769762 original size:19 final size:19
Alignment explanation
Indices: 7769738--7769784 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
7769728 GTGAGTAAGC
7769738 TACTTCAATTGC-TAGAAAG
1 TACTTCAATT-CTTAGAAAG
7769757 TACTTCAATTCTTAGAAAG
1 TACTTCAATTCTTAGAAAG
7769776 TACTTCAAT
1 TACTTCAAT
7769785 CTCCTTAACT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 1 0.04
19 26 0.96
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (19 bp):
TACTTCAATTCTTAGAAAG
Found at i:7772504 original size:25 final size:25
Alignment explanation
Indices: 7772462--7772524 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
7772452 TAAAATGGCT
* **
7772462 ATGAAGGCCTTAACAGGGTTTGACA
1 ATGAAGGCCTAAACAGGGTTCAACA
* *
7772487 ATGAAGGTCTAAATAGGGTTCAACA
1 ATGAAGGCCTAAACAGGGTTCAACA
7772512 ATGAAGGCCTAAA
1 ATGAAGGCCTAAA
7772525 ATAGAAGTCA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.22
Consensus pattern (25 bp):
ATGAAGGCCTAAACAGGGTTCAACA
Found at i:7772535 original size:26 final size:25
Alignment explanation
Indices: 7772484--7772542 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 25
7772474 ACAGGGTTTG
* *
7772484 ACAATGAAGGTCTAAATAGGGTTCA
1 ACAATGAAGGCCTAAATAGAGTTCA
7772509 ACAATGAAGGCCTAAAATAGAAG-TCA
1 ACAATGAAGGCCT-AAATAG-AGTTCA
7772535 ACAATGAA
1 ACAATGAA
7772543 AGCTGAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 12 0.40
26 17 0.57
27 1 0.03
ACGTcount: A:0.47, C:0.14, G:0.20, T:0.19
Consensus pattern (25 bp):
ACAATGAAGGCCTAAATAGAGTTCA
Found at i:7772937 original size:14 final size:14
Alignment explanation
Indices: 7772918--7772967 Score: 64
Period size: 14 Copynumber: 3.4 Consensus size: 14
7772908 TTCTTTTTTT
7772918 AAAAAGTCAAAAAA
1 AAAAAGTCAAAAAA
*
7772932 AAAAAGTCACAGTAAA
1 AAAAAGTCA-A-AAAA
7772948 AAAAAGTCAAAAAA
1 AAAAAGTCAAAAAA
7772962 AGAAAA
1 A-AAAA
7772968 AAGAAAAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 13 0.42
15 6 0.19
16 12 0.39
ACGTcount: A:0.74, C:0.08, G:0.10, T:0.08
Consensus pattern (14 bp):
AAAAAGTCAAAAAA
Found at i:7772967 original size:16 final size:15
Alignment explanation
Indices: 7772918--7772968 Score: 59
Period size: 16 Copynumber: 3.3 Consensus size: 15
7772908 TTCTTTTTTT
7772918 AAAAAGTC-AAAAAA
1 AAAAAGTCAAAAAAA
**
7772932 AAAAAGTCACAGTAAA
1 AAAAAGTCA-AAAAAA
7772948 AAAAAGTCAAAAAAA
1 AAAAAGTCAAAAAAA
7772963 GAAAAA
1 -AAAAA
7772969 AGAAAAAGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
14 8 0.27
15 4 0.13
16 18 0.60
ACGTcount: A:0.75, C:0.08, G:0.10, T:0.08
Consensus pattern (15 bp):
AAAAAGTCAAAAAAA
Found at i:7774183 original size:21 final size:21
Alignment explanation
Indices: 7774159--7774205 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
7774149 ATGAGTTTAA
* *
7774159 TATATTAATTGTATGATATTT
1 TATATTAATTGCATGATAATT
7774180 TATATTAATTGCATGATAATT
1 TATATTAATTGCATGATAATT
7774201 TATAT
1 TATAT
7774206 ATATTATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.36, C:0.02, G:0.09, T:0.53
Consensus pattern (21 bp):
TATATTAATTGCATGATAATT
Found at i:7774209 original size:25 final size:24
Alignment explanation
Indices: 7774154--7774211 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 24
7774144 TTGACATGAG
*
7774154 TTTA-ATATATTAATTGTATGATA
1 TTTATATATATTAATTGCATGATA
7774177 -TT-T-TATATTAATTGCATGATAA
1 TTTATATATATTAATTGCATGAT-A
7774199 TTTATATATATTA
1 TTTATATATATTA
7774212 TATTATTGCG
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
21 16 0.55
22 3 0.10
23 2 0.07
24 1 0.03
25 7 0.24
ACGTcount: A:0.38, C:0.02, G:0.07, T:0.53
Consensus pattern (24 bp):
TTTATATATATTAATTGCATGATA
Found at i:7774239 original size:19 final size:20
Alignment explanation
Indices: 7774205--7774265 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 20
7774195 ATAATTTATA
*
7774205 TATATTATATTATTGCGTGAT
1 TATATTAT-TTATTGCATGAT
*
7774226 TATATTATTT-TTGCATG-G
1 TATATTATTTATTGCATGAT
7774244 T-TATTA-TTATTGCATGA-
1 TATATTATTTATTGCATGAT
7774261 TATAT
1 TATAT
7774266 CATATTATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
16 2 0.06
17 13 0.37
18 4 0.11
19 6 0.17
20 2 0.06
21 8 0.23
ACGTcount: A:0.28, C:0.05, G:0.13, T:0.54
Consensus pattern (20 bp):
TATATTATTTATTGCATGAT
Found at i:7779844 original size:228 final size:229
Alignment explanation
Indices: 7779446--7779900 Score: 840
Period size: 228 Copynumber: 2.0 Consensus size: 229
7779436 CATGATGGAA
7779446 AAAGTTTGTCTATTACAAAGGACACAATAATTGTTTCATTCATACTCATATCATATTGTTTAAGC
1 AAAGTTTGTCTATTACAAAGGACACAATAATTGTTTCATTCATACTCATATCATATTGTTTAAGC
*
7779511 TGATTAAGCATTTTTTTCAATTTCATGCAGTTGTTCAATCATAGAATGTCCGTCAACCATATGAT
66 TGATTAAGCATTTTTTTCAATTTCATGCAGTTGTTCAATCATAGAATGTCCATCAACCATATGAT
*
7779576 AATTATTGAAATGACTAACAAAAATTTTCTTACTTATTGCTTCCTCGATCATATACTTGATCTTC
131 AATTATTGAAATGACTAACAAAAATTTTCTTACTTATTGCTTCCTCGATCATATACTTGATCTCC
7779641 AATTTGTCCTATAACTCATTTACAGTAGTCTCGT
196 AATTTGTCCTATAACTCATTTACAGTAGTCTCGT
* *
7779675 AAAGTTTGTTTATTACAAAGGACATAATAATTGTTTCATTCATACTCATATCATATTGTTTAAGC
1 AAAGTTTGTCTATTACAAAGGACACAATAATTGTTTCATTCATACTCATATCATATTGTTTAAGC
7779740 TGATTAAGCATTTTTTT-AATTTCATGCAGTTGTTCAATCATAGAATGTCCATCAACCATATGAT
66 TGATTAAGCATTTTTTTCAATTTCATGCAGTTGTTCAATCATAGAATGTCCATCAACCATATGAT
*
7779804 AATTATTGAAATGACTAACAAAAATTTTCTTCCTTATTGCTTCCTCGATCATATACTTGATCTCC
131 AATTATTGAAATGACTAACAAAAATTTTCTTACTTATTGCTTCCTCGATCATATACTTGATCTCC
* *
7779869 AATTTGTCCTATAATTCATTTGCAGTAGTCTC
196 AATTTGTCCTATAACTCATTTACAGTAGTCTC
7779901 ATTTTGGTAT
Statistics
Matches: 219, Mismatches: 7, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
228 139 0.63
229 80 0.37
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.41
Consensus pattern (229 bp):
AAAGTTTGTCTATTACAAAGGACACAATAATTGTTTCATTCATACTCATATCATATTGTTTAAGC
TGATTAAGCATTTTTTTCAATTTCATGCAGTTGTTCAATCATAGAATGTCCATCAACCATATGAT
AATTATTGAAATGACTAACAAAAATTTTCTTACTTATTGCTTCCTCGATCATATACTTGATCTCC
AATTTGTCCTATAACTCATTTACAGTAGTCTCGT
Found at i:7781632 original size:21 final size:20
Alignment explanation
Indices: 7781606--7781669 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 20
7781596 TTTTCAAATC
*
7781606 TTTGAGTTTCAAATGTGAATA
1 TTTGAGTTT-GAATGTGAATA
*
7781627 TTTGAGTTTTGAATGAGAATA
1 TTTGAG-TTTGAATGTGAATA
*
7781648 TTTGAATTGTGAATGTGAATA
1 TTTGAGTT-TGAATGTGAATA
7781669 T
1 T
7781670 CCAAAAGTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
20 2 0.05
21 32 0.86
22 3 0.08
ACGTcount: A:0.33, C:0.02, G:0.22, T:0.44
Consensus pattern (20 bp):
TTTGAGTTTGAATGTGAATA
Found at i:7781774 original size:46 final size:45
Alignment explanation
Indices: 7781687--7781788 Score: 127
Period size: 46 Copynumber: 2.3 Consensus size: 45
7781677 TTTTAATTAC
* *
7781687 GAATCTTTG-AATTTTATATGTGAATTTTAAAGTTTTGTGAATGA
1 GAATCTTTGAAATCTTATATGTGAATCTTAAAGTTTTGTGAATGA
*
7781731 GAATCTTTGAAATCCTTA-ATGTGAATCCTTAAAGTTTTTTGAATGA
1 GAATCTTTGAAAT-CTTATATGTGAAT-CTTAAAGTTTTGTGAATGA
* *
7781777 AAATTTTTGAAA
1 GAATCTTTGAAA
7781789 ATTTGGATAT
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
44 9 0.18
45 11 0.22
46 30 0.60
ACGTcount: A:0.34, C:0.06, G:0.16, T:0.44
Consensus pattern (45 bp):
GAATCTTTGAAATCTTATATGTGAATCTTAAAGTTTTGTGAATGA
Found at i:7782064 original size:17 final size:17
Alignment explanation
Indices: 7782019--7782192 Score: 111
Period size: 17 Copynumber: 10.3 Consensus size: 17
7782009 GAATCTTTGT
* *
7782019 TTCTTGCGAATCTGAAA
1 TTCTTACGAATTTGAAA
* **
7782036 TTTTTGTGAATTTGAAA
1 TTCTTACGAATTTGAAA
*
7782053 TTCTTACAAATTTGAAA
1 TTCTTACGAATTTGAAA
*
7782070 TTATTACGAA-TTGAAAA
1 TTCTTACGAATTTG-AAA
7782087 TTCTTACGAATTTGAAA
1 TTCTTACGAATTTGAAA
* ** * *
7782104 AT-TTATTAATGTAAAA
1 TTCTTACGAATTTGAAA
**
7782120 TTCTTACGAATCTAAAAA
1 TTCTTACGAAT-TTGAAA
* *
7782138 TT-TTACAAATTTTAAA
1 TTCTTACGAATTTGAAA
* **
7782154 TTCTTGCGAATTTTTAA
1 TTCTTACGAATTTGAAA
* *
7782171 TTCTTACAAATCTGAAA
1 TTCTTACGAATTTGAAA
*
7782188 ATCTT
1 TTCTT
7782193 GTGAATATTT
Statistics
Matches: 120, Mismatches: 32, Indels: 10
0.74 0.20 0.06
Matches are distributed among these distances:
16 20 0.17
17 91 0.76
18 9 0.08
ACGTcount: A:0.38, C:0.10, G:0.09, T:0.43
Consensus pattern (17 bp):
TTCTTACGAATTTGAAA
Found at i:7782221 original size:34 final size:34
Alignment explanation
Indices: 7782136--7782226 Score: 103
Period size: 34 Copynumber: 2.7 Consensus size: 34
7782126 CGAATCTAAA
* * *
7782136 AATT-TTACAAATTTTAAATTCTTGCGAATTTTT
1 AATTCTTACAAATTTGAAAATCTTGCGAATATTT
* *
7782169 AATTCTTACAAATCTGAAAATCTTGTGAATATTT
1 AATTCTTACAAATTTGAAAATCTTGCGAATATTT
***
7782203 AATTCTTGTGAATTTGAAAATCTT
1 AATTCTTACAAATTTGAAAATCTT
7782227 CAATTCTTAC
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
33 4 0.08
34 44 0.92
ACGTcount: A:0.35, C:0.10, G:0.09, T:0.46
Consensus pattern (34 bp):
AATTCTTACAAATTTGAAAATCTTGCGAATATTT
Found at i:7782226 original size:17 final size:18
Alignment explanation
Indices: 7782183--7782226 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
7782173 CTTACAAATC
7782183 TGAAAATCTTGTGAATAT
1 TGAAAATCTTGTGAATAT
* *
7782201 T-TAATTCTTGTGAAT-T
1 TGAAAATCTTGTGAATAT
7782217 TGAAAATCTT
1 TGAAAATCTT
7782227 CAATTCTTAC
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
16 2 0.10
17 18 0.86
18 1 0.05
ACGTcount: A:0.34, C:0.07, G:0.14, T:0.45
Consensus pattern (18 bp):
TGAAAATCTTGTGAATAT
Found at i:7782231 original size:25 final size:25
Alignment explanation
Indices: 7782203--7782251 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
7782193 GTGAATATTT
** *
7782203 AATTCTTGTGAATTTGAAAATCTTC
1 AATTCTTACGAATATGAAAATCTTC
7782228 AATTCTTACGAATATGAAAATCTT
1 AATTCTTACGAATATGAAAATCTT
7782252 AAGAATATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (25 bp):
AATTCTTACGAATATGAAAATCTTC
Found at i:7782271 original size:18 final size:18
Alignment explanation
Indices: 7782225--7782287 Score: 83
Period size: 18 Copynumber: 3.6 Consensus size: 18
7782215 TTTGAAAATC
*
7782225 TTCAATTCTTACGAATA-
1 TTCAATTCTTAAGAATAT
** *
7782242 TGAAAATCTTAAGAATAT
1 TTCAATTCTTAAGAATAT
7782260 TTCAATTCTTAAGAATAT
1 TTCAATTCTTAAGAATAT
7782278 TTCAATTCTT
1 TTCAATTCTT
7782288 GCGAACTTCT
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
17 13 0.34
18 25 0.66
ACGTcount: A:0.38, C:0.13, G:0.06, T:0.43
Consensus pattern (18 bp):
TTCAATTCTTAAGAATAT
Found at i:7783577 original size:27 final size:26
Alignment explanation
Indices: 7783529--7783579 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
7783519 TTGGTAATTT
***
7783529 TATTTATTTATTTTGTTTTATTTTAC
1 TATTTATTTATTTTGAAATATTTTAC
7783555 TATTTATTTATTTTTGAAATATTTT
1 TATTTATTTA-TTTTGAAATATTTT
7783580 TACATAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 10 0.48
27 11 0.52
ACGTcount: A:0.24, C:0.02, G:0.04, T:0.71
Consensus pattern (26 bp):
TATTTATTTATTTTGAAATATTTTAC
Found at i:7790368 original size:16 final size:17
Alignment explanation
Indices: 7790339--7790372 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
7790329 TTTTTTTAAA
7790339 ATATAAATTTAAAAAAT
1 ATATAAATTTAAAAAAT
7790356 ATATAAA-TTAAAAAAT
1 ATATAAATTTAAAAAAT
7790372 A
1 A
7790373 AATTTTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
ATATAAATTTAAAAAAT
Found at i:7791838 original size:16 final size:16
Alignment explanation
Indices: 7791817--7791849 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7791807 AATTTTTATA
7791817 AAATTTTT-TGCATTTT
1 AAATTTTTATG-ATTTT
7791833 AAATTTTTATGATTTT
1 AAATTTTTATGATTTT
7791849 A
1 A
7791850 GAAAATTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.88
17 2 0.12
ACGTcount: A:0.30, C:0.03, G:0.06, T:0.61
Consensus pattern (16 bp):
AAATTTTTATGATTTT
Found at i:7793145 original size:19 final size:19
Alignment explanation
Indices: 7793005--7793237 Score: 90
Period size: 19 Copynumber: 11.9 Consensus size: 19
7792995 AGTAAATCCA
*
7793005 AAAGTCAAATCCTAAAACC-
1 AAAGTCAAA-CCTTAAACCT
**
7793024 AAAGTCAAAGTTTAAACCCT
1 AAAGTCAAACCTTAAA-CCT
* **
7793044 AAAATCAAACCTTAAAATTT
1 AAAGTCAAACCTT-AAACCT
* *
7793064 AAAAGTTAAACTTTAAACCT
1 -AAAGTCAAACCTTAAACCT
7793084 AAAGTC-AACCTCTAAATCC-
1 AAAGTCAAACCT-TAAA-CCT
7793103 AAAGTCAAATCCTCGACCTAAAACCT
1 AAAGTCAAA-CCT-----T-AAACCT
*
7793129 AAAGTCAAACCTTAAACCC
1 AAAGTCAAACCTTAAACCT
* * *
7793148 AAAATTAAATCTTAAAACCTT
1 AAAGTCAAACCTT-AAACC-T
* *
7793169 AAAATCAAACC-CAAACCT
1 AAAGTCAAACCTTAAACCT
* *
7793187 AAACTTTAAACCTTAAACCCT
1 AAA-GTCAAACCTTAAA-CCT
7793208 --A---AAACC-TAAACCT
1 AAAGTCAAACCTTAAACCT
*
7793221 AAAGTCAAACCCTAAAC
1 AAAGTCAAACCTTAAAC
7793238 TGTAGCCTAA
Statistics
Matches: 163, Mismatches: 26, Indels: 50
0.68 0.11 0.21
Matches are distributed among these distances:
13 3 0.02
14 4 0.02
15 6 0.04
18 17 0.10
19 58 0.36
20 28 0.17
21 28 0.17
25 7 0.04
26 12 0.07
ACGTcount: A:0.49, C:0.25, G:0.04, T:0.22
Consensus pattern (19 bp):
AAAGTCAAACCTTAAACCT
Found at i:7793196 original size:33 final size:32
Alignment explanation
Indices: 7793142--7793203 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 32
7793132 GTCAAACCTT
*
7793142 AAACCCAAAATTAAATCTTAAAACCTTAAAATC
1 AAACCCAAAACTAAATCTT-AAACCTTAAAATC
*
7793175 AAACCCAAACCTAAA-CTTTAAACCTTAAA
1 AAACCCAAAACTAAATC-TTAAACCTTAAA
7793204 CCCTAAAACC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
32 11 0.42
33 15 0.58
ACGTcount: A:0.53, C:0.24, G:0.00, T:0.23
Consensus pattern (32 bp):
AAACCCAAAACTAAATCTTAAACCTTAAAATC
Found at i:7793196 original size:40 final size:39
Alignment explanation
Indices: 7793121--7793220 Score: 103
Period size: 40 Copynumber: 2.5 Consensus size: 39
7793111 ATCCTCGACC
* * *
7793121 TAAAACCTAAAGTCAAACCTTAAACCCAAAATTAAATCT
1 TAAAACCTAAAATCAAACCTCAAACCCAAAATTAAACCT
* *
7793160 TAAAACCTTAAAATCAAACC-CAAACCTAAACTTTAAACCT
1 TAAAACC-TAAAATCAAACCTCAAACCCAAA-ATTAAACCT
* *
7793200 TAAACCCTAAAACCTAAACCT
1 TAAAACCTAAAATC-AAACCT
7793221 AAAGTCAAAC
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
39 21 0.42
40 29 0.58
ACGTcount: A:0.50, C:0.27, G:0.01, T:0.22
Consensus pattern (39 bp):
TAAAACCTAAAATCAAACCTCAAACCCAAAATTAAACCT
Done.