Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14313602
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 50000 characters in sequence are not A, C, G, or T
File 36 of 74
Found at i:7793203 original size:32 final size:33
Alignment explanation
Indices: 7793142--7793203 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 33
7793132 GTCAAACCTT
*
7793142 AAACCCAAAATTAAATCTTAAAACCTTAAAATC
1 AAACCCAAAACTAAATCTTAAAACCTTAAAATC
* *
7793175 AAACCCAAACCTAAA-CTTTAAACCTTAAA
1 AAACCCAAAACTAAATCTTAAAACCTTAAA
7793204 CCCTAAAACC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 13 0.50
33 13 0.50
ACGTcount: A:0.53, C:0.24, G:0.00, T:0.23
Consensus pattern (33 bp):
AAACCCAAAACTAAATCTTAAAACCTTAAAATC
Found at i:7793286 original size:18 final size:19
Alignment explanation
Indices: 7793227--7793284 Score: 91
Period size: 19 Copynumber: 3.1 Consensus size: 19
7793217 ACCTAAAGTC
*
7793227 AAACCCTAAACTGTAGCCT
1 AAACCCTAAACTCTAGCCT
7793246 AAACCCT-AACTCTAGCCT
1 AAACCCTAAACTCTAGCCT
*
7793264 AAACCCTAAACTCTAACCT
1 AAACCCTAAACTCTAGCCT
7793283 AA
1 AA
7793285 CCAAAACCCT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
18 17 0.47
19 19 0.53
ACGTcount: A:0.40, C:0.34, G:0.05, T:0.21
Consensus pattern (19 bp):
AAACCCTAAACTCTAGCCT
Found at i:7793295 original size:12 final size:12
Alignment explanation
Indices: 7793280--7793319 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
7793270 TAAACTCTAA
7793280 CCTAACCAAAAC
1 CCTAACCAAAAC
*
7793292 CCTAGCCAAAA-
1 CCTAACCAAAAC
7793303 CCTAACCAAAAC
1 CCTAACCAAAAC
7793315 CCTAA
1 CCTAA
7793320 GCTATAAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 10 0.40
12 15 0.60
ACGTcount: A:0.47, C:0.40, G:0.03, T:0.10
Consensus pattern (12 bp):
CCTAACCAAAAC
Found at i:7793306 original size:11 final size:11
Alignment explanation
Indices: 7793278--7793315 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
7793268 CCTAAACTCT
7793278 AACCTAACCAA
1 AACCTAACCAA
*
7793289 AACCCTAGCCAA
1 AA-CCTAACCAA
7793301 AACCTAACCAA
1 AACCTAACCAA
7793312 AACC
1 AACC
7793316 CTAAGCTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 14 0.58
12 10 0.42
ACGTcount: A:0.50, C:0.39, G:0.03, T:0.08
Consensus pattern (11 bp):
AACCTAACCAA
Found at i:7793476 original size:12 final size:12
Alignment explanation
Indices: 7793461--7793493 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7793451 CCTTAAACTC
7793461 TAAACCTAACCA
1 TAAACCTAACCA
7793473 TAAACCTAACCA
1 TAAACCTAACCA
7793485 -AAATCCTAA
1 TAAA-CCTAA
7793494 ACATGACATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 3 0.15
12 17 0.85
ACGTcount: A:0.52, C:0.30, G:0.00, T:0.18
Consensus pattern (12 bp):
TAAACCTAACCA
Found at i:7793528 original size:21 final size:21
Alignment explanation
Indices: 7793503--7793543 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7793493 AACATGACAT
* * *
7793503 AAACCTTAAACTTTAAAACTG
1 AAACCCTAAAATTAAAAACTG
7793524 AAACCCTAAAATTAAAAACT
1 AAACCCTAAAATTAAAAACT
7793544 TTAAACCTAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.54, C:0.20, G:0.02, T:0.24
Consensus pattern (21 bp):
AAACCCTAAAATTAAAAACTG
Found at i:7796781 original size:1 final size:1
Alignment explanation
Indices: 7796777--7796819 Score: 50
Period size: 1 Copynumber: 43.0 Consensus size: 1
7796767 AAGGAAGAAG
* * * *
7796777 AAAAAAAACAAAAAAAACAAAAAAAAAGAAAAAAAAAAGAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
7796820 GAGATAAAAG
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.91, C:0.05, G:0.05, T:0.00
Consensus pattern (1 bp):
A
Found at i:7796784 original size:32 final size:32
Alignment explanation
Indices: 7796724--7796783 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
7796714 TGAATAACGA
*
7796724 GTGAAAAAAAAAAGAAAAAATGAGAAAAAGGT
1 GTGAAAAAAAAAAGAAAAAATGAAAAAAAGGT
* *
7796756 GTGAAAAAAAAAAGGAAGAA-GAAAAAAA
1 GTGAAAAAAAAAAGAAAAAATGAAAAAAA
7796784 ACAAAAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 7 0.28
32 18 0.72
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.07
Consensus pattern (32 bp):
GTGAAAAAAAAAAGAAAAAATGAAAAAAAGGT
Found at i:7796793 original size:11 final size:10
Alignment explanation
Indices: 7796777--7796813 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
7796767 AAGGAAGAAG
7796777 AAAAAAAAC-
1 AAAAAAAACA
7796786 AAAAAAAACA
1 AAAAAAAACA
*
7796796 AAAAAAAAGA
1 AAAAAAAACA
7796806 AAAAAAAA
1 AAAAAAAA
7796814 AGAAAAGAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
9 9 0.35
10 17 0.65
ACGTcount: A:0.92, C:0.05, G:0.03, T:0.00
Consensus pattern (10 bp):
AAAAAAAACA
Found at i:7796819 original size:10 final size:10
Alignment explanation
Indices: 7796771--7796819 Score: 55
Period size: 10 Copynumber: 4.7 Consensus size: 10
7796761 AAAAAAAAGG
7796771 AAGAAGAAAAA
1 AAGAA-AAAAA
7796782 AA-ACAAAAAA
1 AAGA-AAAAAA
*
7796792 AACAAAAAAA
1 AAGAAAAAAA
7796802 AAGAAAAAAAA
1 AAG-AAAAAAA
7796813 AAGAAAA
1 AAGAAAA
7796820 GAGATAAAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
10 20 0.59
11 14 0.41
ACGTcount: A:0.88, C:0.04, G:0.08, T:0.00
Consensus pattern (10 bp):
AAGAAAAAAA
Found at i:7796819 original size:18 final size:18
Alignment explanation
Indices: 7796758--7796830 Score: 62
Period size: 18 Copynumber: 4.1 Consensus size: 18
7796748 AAAAAGGTGT
* *
7796758 GAAAAAAAAAAGGAAGAA
1 GAAAAAAAAAAGAAAAAA
7796776 GAAAAAAAACAA-AAAAAA
1 GAAAAAAAA-AAGAAAAAA
*
7796794 -CAAAAAAAAAGAAAAAA
1 GAAAAAAAAAAGAAAAAA
* *
7796811 -AAAAGAAAAGAGATAAAA
1 GAAAA-AAAAAAGAAAAAA
7796829 GA
1 GA
7796831 GGAAAAATGA
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
16 2 0.04
17 16 0.36
18 24 0.53
19 3 0.07
ACGTcount: A:0.82, C:0.03, G:0.14, T:0.01
Consensus pattern (18 bp):
GAAAAAAAAAAGAAAAAA
Found at i:7796828 original size:16 final size:15
Alignment explanation
Indices: 7796758--7796821 Score: 67
Period size: 15 Copynumber: 4.1 Consensus size: 15
7796748 AAAAAGGTGT
**
7796758 GAAAAAAAAAAGGAA
1 GAAAAAAAAAAAAAA
7796773 GAAGAAAAAAAACAAAA
1 GAA-AAAAAAAA-AAAA
*
7796790 -AAAACAAAAAAAAA
1 GAAAAAAAAAAAAAA
7796804 GAAAAAAAAAAGAAAA
1 GAAAAAAAAAA-AAAA
7796820 GA
1 GA
7796822 GATAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
14 4 0.10
15 19 0.46
16 16 0.39
17 2 0.05
ACGTcount: A:0.84, C:0.03, G:0.12, T:0.00
Consensus pattern (15 bp):
GAAAAAAAAAAAAAA
Found at i:7797876 original size:82 final size:79
Alignment explanation
Indices: 7797753--7797956 Score: 230
Period size: 82 Copynumber: 2.5 Consensus size: 79
7797743 ACAAATCTTT
* *
7797753 TTTTCTTATGAATCTGAAAGT-CTCTGTGAACTTGGAATCTTTATGAATCTAGAACCTTTGCAAA
1 TTTT-TTATGAATCTGAAAGTCCT-TGTGAACCT-GAATCTTTATGAATCTAAAACCTTTGCAAA
*
7797817 ATTTAAAATCTAGTGAATC
63 ACTTAAAATCT--TGAATC
* * * *
7797836 TTTTTTAAGAATTTGAAAGTCCTTGTGAACCTGAAATCTTTATGAATTTAAAACCTTTGCGAAAC
1 TTTTTTATGAATCTGAAAGTCCTTGTGAACCTG-AATCTTTATGAATCTAAAACCTTTGCAAAAC
*
7797901 TTAAAATCTTGCATC
65 TTAAAATCTTGAATC
* * * *
7797916 TTTCTTATGAGTCTGAAAATCTTTGTGAACCTTGAATCTTT
1 TTTTTTATGAATCTGAAAGTCCTTGTGAACC-TGAATCTTT
7797957 GCAAATCTAA
Statistics
Matches: 104, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
80 37 0.36
81 3 0.03
82 58 0.56
83 6 0.06
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (79 bp):
TTTTTTATGAATCTGAAAGTCCTTGTGAACCTGAATCTTTATGAATCTAAAACCTTTGCAAAACT
TAAAATCTTGAATC
Found at i:7798000 original size:18 final size:18
Alignment explanation
Indices: 7797959--7798000 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
7797949 GAATCTTTGC
* *
7797959 AAATCTAAAATTTTTATG
1 AAATTTAAAATTTTTACG
7797977 AAATTTAAAA-TTTTACG
1 AAATTTAAAATTTTTACG
7797994 AATATTT
1 AA-ATTT
7798001 CTTTCTTGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (18 bp):
AAATTTAAAATTTTTACG
Found at i:7798113 original size:86 final size:86
Alignment explanation
Indices: 7797914--7798113 Score: 215
Period size: 86 Copynumber: 2.3 Consensus size: 86
7797904 AAATCTTGCA
* * * ** * * * *
7797914 TCTTTCTTATGAGTCTGAAAATCTTTGTGAACCTTGAATCTTTGCAAATCTAAAATTTTTATGAA
1 TCTTTCTTGTGAATCTGAAAATCTTTGCGAACCTACAATATTTGCAAATCTAAAACTTCTACGAA
* *
7797979 ATTTAAAATTTTACGAATATT
66 ACTTAAAATCTTACGAATATT
* * *
7798000 TCTTTCTTGTGAATCTGAAAGTATTTGCGAACCTACAATATTTGCGAATCTAAAACTTCTACGAA
1 TCTTTCTTGTGAATCTGAAAATCTTTGCGAACCTACAATATTTGCAAATCTAAAACTTCTACGAA
**
7798065 ACTTGGAATCTTAC-AA-ATCT
66 ACTTAAAATCTTACGAATAT-T
*
7798085 TCTATTCTTGTGAATCTAAAAATCTTTGC
1 TCT-TTCTTGTGAATCTGAAAATCTTTGC
7798114 AAATATTGAA
Statistics
Matches: 93, Mismatches: 19, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
84 2 0.02
85 6 0.06
86 85 0.91
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.41
Consensus pattern (86 bp):
TCTTTCTTGTGAATCTGAAAATCTTTGCGAACCTACAATATTTGCAAATCTAAAACTTCTACGAA
ACTTAAAATCTTACGAATATT
Found at i:7798637 original size:120 final size:118
Alignment explanation
Indices: 7798265--7798712 Score: 357
Period size: 120 Copynumber: 3.7 Consensus size: 118
7798255 CTCGGTTTCG
* *** * * ** **
7798265 TCTAGATCATTTTTTTGATTCACAGTT-TCATCCCAATTAGTCATATTTGACCTTGACTCGGTAT
1 TCTAGATCA-TTTTTTGACTCACAGTTCT-ATCCTGGTCAATCATATTCAACCTTGACTCGGTCC
* * * * * **
7798329 TGGTCACTTTATCTTTTTGATTCATTGTTTCATCTCAGTCATTCAATCTCGGTTCCA
64 TGATCGCTTTAT-TTTTTGACTCATGGTTTCATCT-AGTCATTCGATCTCAATTCCA
* * * * * * * *
7798386 TCCAAATTATTTTTTGACTCACGGTTCTACCCTGGTCAGTCATATTCAA-CTTCGACTCGATCTT
1 TCTAGATCATTTTTTGACTCACAGTTCTATCCTGGTCAATCATATTCAACCTT-GACTCGGTCCT
* *
7798450 GAT-GACTTTATTTTTTGACTCATGGTTTTATCTTGATCATTCGATCTCAATTTCGC-
65 GATCG-CTTTATTTTTTGACTCATGGTTTCATCTAG-TCATTCGATCTCAA-TTC-CA
* * *
7798506 T-TAGATCATTTTCTGACTCGCAGTTCTATCCTGGTCAATCATATTCAACCTTGACTTGGTCCTG
1 TCTAGATCATTTTTTGACTCACAGTTCTATCCTGGTCAATCATATTCAACCTTGACTCGGTCCTG
* * **
7798570 ATCGCTTTATCTTTTTGACTCAAGGTTTCATCCTAGTCATTTGATCTTTATTCCA
66 ATCGCTTTAT-TTTTTGACTCATGGTTTCAT-CTAGTCATTCGATCTCAATTCCA
* * * * * * * *
7798625 TCTAGATCATTTTTTTATTAACAGTTTTATCCTAGTTAATCACATTCGACCTTGACTCGGTCCTG
1 TCTAGATCATTTTTTGACTCACAGTTCTATCCTGGTCAATCATATTCAACCTTGACTCGGTCCTG
* **
7798690 GTCGCTTTATTTTTCAACTCATG
66 ATCGCTTTATTTTTTGACTCATG
7798713 ATTTTGTATC
Statistics
Matches: 260, Mismatches: 55, Indels: 26
0.76 0.16 0.08
Matches are distributed among these distances:
118 2 0.01
119 103 0.40
120 144 0.55
121 11 0.04
ACGTcount: A:0.21, C:0.22, G:0.13, T:0.44
Consensus pattern (118 bp):
TCTAGATCATTTTTTGACTCACAGTTCTATCCTGGTCAATCATATTCAACCTTGACTCGGTCCTG
ATCGCTTTATTTTTTGACTCATGGTTTCATCTAGTCATTCGATCTCAATTCCA
Found at i:7799061 original size:19 final size:19
Alignment explanation
Indices: 7799037--7799083 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 19
7799027 CATTACATTT
*
7799037 TTATTAGTATTATTTGTTA
1 TTATTACTATTATTTGTTA
7799056 TTATTAATACTATTATTTGTTA
1 TTA-T--TACTATTATTTGTTA
7799078 TTATTA
1 TTATTA
7799084 ATACTATAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
19 5 0.21
20 1 0.04
21 1 0.04
22 17 0.71
ACGTcount: A:0.30, C:0.02, G:0.06, T:0.62
Consensus pattern (19 bp):
TTATTACTATTATTTGTTA
Found at i:7799072 original size:22 final size:22
Alignment explanation
Indices: 7799044--7799090 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
7799034 TTTTTATTAG
7799044 TATTATTTGTTATTATTAATAC
1 TATTATTTGTTATTATTAATAC
7799066 TATTATTTGTTATTATTAATAC
1 TATTATTTGTTATTATTAATAC
7799088 TAT
1 TAT
7799091 AGTATAGTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (22 bp):
TATTATTTGTTATTATTAATAC
Found at i:7799656 original size:31 final size:31
Alignment explanation
Indices: 7799616--7799686 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 31
7799606 AATAAATATT
* *
7799616 TGAAGTTTTCGATGAAATTTTT-GATAGG-ATA
1 TGAATTTTTCAATG-AATTTTTCGAT-GGAATA
*
7799647 TGAATTTTTCAATGAGTTTTTCGATGGAATA
1 TGAATTTTTCAATGAATTTTTCGATGGAATA
7799678 TGAATTTTT
1 TGAATTTTT
7799687 GGTTTTAAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 8 0.23
31 27 0.77
ACGTcount: A:0.30, C:0.04, G:0.20, T:0.46
Consensus pattern (31 bp):
TGAATTTTTCAATGAATTTTTCGATGGAATA
Found at i:7799955 original size:18 final size:19
Alignment explanation
Indices: 7799919--7799960 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
7799909 CGAGGTTTCT
7799919 TTTTTTCATTTTATGTTTA
1 TTTTTTCATTTTATGTTTA
*
7799938 TTTTTTGATTTTAT-TTTA
1 TTTTTTCATTTTATGTTTA
7799956 TTTTT
1 TTTTT
7799961 AACTCATCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 9 0.41
19 13 0.59
ACGTcount: A:0.14, C:0.02, G:0.05, T:0.79
Consensus pattern (19 bp):
TTTTTTCATTTTATGTTTA
Found at i:7800166 original size:39 final size:40
Alignment explanation
Indices: 7800114--7800232 Score: 118
Period size: 40 Copynumber: 3.0 Consensus size: 40
7800104 TCTTTTCAAA
7800114 TAAGTTTTC--AAAATA-AAATAAAAAAAAAAGATCCTTT
1 TAAGTTTTCAAAAAATATAAATAAAAAAAAAAGATCCTTT
** * * *
7800151 TAAGTTTTCAAAAAATATATTTATAAAAAAAGGATCTTTT
1 TAAGTTTTCAAAAAATATAAATAAAAAAAAAAGATCCTTT
* ** *
7800191 TAAGTTTTCAAAAAAAATTTATAAAAACAAAAAATATCCTTT
1 TAAGTTTTCAAAAAATATAAAT-AAAA-AAAAAAGATCCTTT
7800233 CAATAAATAA
Statistics
Matches: 65, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
37 9 0.14
39 6 0.09
40 36 0.55
41 3 0.05
42 11 0.17
ACGTcount: A:0.53, C:0.08, G:0.05, T:0.34
Consensus pattern (40 bp):
TAAGTTTTCAAAAAATATAAATAAAAAAAAAAGATCCTTT
Found at i:7800179 original size:40 final size:38
Alignment explanation
Indices: 7800114--7800217 Score: 140
Period size: 40 Copynumber: 2.7 Consensus size: 38
7800104 TCTTTTCAAA
*
7800114 TAAGTTTTCAAAATAAAA--TAAAAAAAAAAGATCCTTT
1 TAAGTTTTCAAAA-AAAATTTATAAAAAAAAGATCCTTT
* *
7800151 TAAGTTTTCAAAAAATATATTTATAAAAAAAGGATCTTTT
1 TAAGTTTTCAAAAAA-A-ATTTATAAAAAAAAGATCCTTT
7800191 TAAGTTTTCAAAAAAAATTTATAAAAA
1 TAAGTTTTCAAAAAAAATTTATAAAAA
7800218 CAAAAAATAT
Statistics
Matches: 60, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
36 2 0.03
37 14 0.23
38 12 0.20
39 1 0.02
40 31 0.52
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.35
Consensus pattern (38 bp):
TAAGTTTTCAAAAAAAATTTATAAAAAAAAGATCCTTT
Found at i:7801379 original size:24 final size:25
Alignment explanation
Indices: 7801329--7801379 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 25
7801319 TAAAATATAG
*
7801329 AACATACTCTTCAGGATATAATTAA
1 AACATACTCTTCAGGATATAATAAA
* * *
7801354 AACATACT-TTTAGGGTTTAATAAA
1 AACATACTCTTCAGGATATAATAAA
7801378 AA
1 AA
7801380 ATAACTAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
24 14 0.64
25 8 0.36
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (25 bp):
AACATACTCTTCAGGATATAATAAA
Found at i:7803155 original size:3 final size:3
Alignment explanation
Indices: 7803147--7803200 Score: 83
Period size: 3 Copynumber: 18.3 Consensus size: 3
7803137 ACGCAGACAA
*
7803147 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAC AA- AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
7803194 CAT AAT A
1 AAT AAT A
7803201 TTAAAATTGT
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
2 2 0.04
3 45 0.96
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:7803476 original size:30 final size:28
Alignment explanation
Indices: 7803442--7803515 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 28
7803432 AAATTAAAAA
* *
7803442 ATTAAAGATTTATTTGAATATAAAATAAAG
1 ATTAAAAACTTATTTG-A-ATAAAATAAAG
*
7803472 ATTAAAAACTTATTTGAATAAAATAAAA
1 ATTAAAAACTTATTTGAATAAAATAAAG
7803500 ATATAAAAACTTATTT
1 AT-TAAAAACTTATTT
7803516 AAGTATAGTA
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
28 12 0.30
29 14 0.35
30 14 0.35
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.36
Consensus pattern (28 bp):
ATTAAAAACTTATTTGAATAAAATAAAG
Found at i:7803877 original size:23 final size:22
Alignment explanation
Indices: 7803850--7803916 Score: 62
Period size: 23 Copynumber: 2.9 Consensus size: 22
7803840 ATTTAGATAT
7803850 AATTTTTATTCATATTTAAATCA
1 AATTTTTATT-ATATTTAAATCA
* * * *
7803873 TATTTTTTTTAATTTTTATATCA
1 AATTTTTATT-ATATTTAAATCA
7803896 AATTATTATATTATATTTAAA
1 AATT-TT-TATTATATTTAAA
7803917 ATTATCAAAT
Statistics
Matches: 33, Mismatches: 9, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
23 21 0.64
24 9 0.27
25 3 0.09
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.58
Consensus pattern (22 bp):
AATTTTTATTATATTTAAATCA
Found at i:7805925 original size:17 final size:15
Alignment explanation
Indices: 7805880--7805926 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 15
7805870 ATGAAATACT
7805880 AAAATAT-TAACAA-
1 AAAATATATAACAAC
*
7805893 ATAATATATAACAAC
1 AAAATATATAACAAC
7805908 AAAATATAATAACTAAC
1 AAAATAT-ATAAC-AAC
7805925 AA
1 AA
7805927 CATGCTAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 6 0.21
14 6 0.21
15 6 0.21
16 5 0.18
17 5 0.18
ACGTcount: A:0.66, C:0.11, G:0.00, T:0.23
Consensus pattern (15 bp):
AAAATATATAACAAC
Found at i:7808565 original size:16 final size:17
Alignment explanation
Indices: 7808530--7808567 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
7808520 TACATCAATT
*
7808530 TATATAGATTCCTAGCA
1 TATATAGATTCCTAGAA
7808547 TATATAGATT-CTAGAA
1 TATATAGATTCCTAGAA
7808563 TATAT
1 TATAT
7808568 GTAATCACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (17 bp):
TATATAGATTCCTAGAA
Found at i:7815404 original size:25 final size:23
Alignment explanation
Indices: 7815334--7815414 Score: 83
Period size: 24 Copynumber: 3.3 Consensus size: 23
7815324 CAATTAAAAC
*
7815334 AAATAAAATTTAAATAACTAAAAT
1 AAATAAAATTTAAATAA-TCAAAT
*
7815358 AAATAAAATTAACAATAA-CAAAT
1 AAATAAAATTTA-AATAATCAAAT
*
7815381 AAAATAAATTTTAAATGAATCAAAT
1 -AAATAAAATTTAAAT-AATCAAAT
7815406 GAAATAAAA
1 -AAATAAAA
7815415 GAAAAAAAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
23 7 0.15
24 23 0.49
25 17 0.36
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.26
Consensus pattern (23 bp):
AAATAAAATTTAAATAATCAAAT
Found at i:7816623 original size:22 final size:21
Alignment explanation
Indices: 7816595--7816646 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 21
7816585 TTAACTCATT
7816595 AAATTAAAAAAATCAAAATTAG
1 AAATTAAAAAAATCAAAATT-G
* *
7816617 AATTTAAAAAAATCAGAATTG
1 AAATTAAAAAAATCAAAATTG
7816638 AAATTAAAA
1 AAATTAAAA
7816647 CGAAAAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 9 0.33
22 18 0.67
ACGTcount: A:0.65, C:0.04, G:0.06, T:0.25
Consensus pattern (21 bp):
AAATTAAAAAAATCAAAATTG
Found at i:7818997 original size:2 final size:2
Alignment explanation
Indices: 7818992--7819033 Score: 50
Period size: 2 Copynumber: 21.0 Consensus size: 2
7818982 TATATTTGTT
* *
7818992 TA TA TA TA TA TA TA TA T- TGA TT TA TA CA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA
7819034 AGAGGTCATA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
1 1 0.03
2 32 0.94
3 1 0.03
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7819008 original size:22 final size:23
Alignment explanation
Indices: 7818980--7819030 Score: 79
Period size: 22 Copynumber: 2.3 Consensus size: 23
7818970 ATTCTTCGTT
*
7818980 TATATATTTG-TTTATATATATA
1 TATATATTTGATTTATACATATA
7819002 TATATA-TTGATTTATACATATA
1 TATATATTTGATTTATACATATA
7819024 TATATAT
1 TATATAT
7819031 ATAAGAGGTC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 3 0.12
22 23 0.88
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (23 bp):
TATATATTTGATTTATACATATA
Found at i:7822861 original size:16 final size:17
Alignment explanation
Indices: 7822819--7822874 Score: 55
Period size: 16 Copynumber: 3.5 Consensus size: 17
7822809 TAAAAATTAT
**
7822819 ATAAATAA-TTTAAATT
1 ATAAATAATTTTAAAAA
* *
7822835 ATATA-AATTTTGAAAA
1 ATAAATAATTTTAAAAA
7822851 A-AAATAATTTTAAAAA
1 ATAAATAATTTTAAAAA
7822867 ATAAATAA
1 ATAAATAA
7822875 ATTATTTTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
15 4 0.13
16 21 0.68
17 6 0.19
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (17 bp):
ATAAATAATTTTAAAAA
Found at i:7823274 original size:12 final size:12
Alignment explanation
Indices: 7823245--7823274 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7823235 TTAATTAGTT
7823245 ATTTTTAATAAA
1 ATTTTTAATAAA
*
7823257 AATTTTAATAAA
1 ATTTTTAATAAA
7823269 ATTTTT
1 ATTTTT
7823275 TTCATTGAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
ATTTTTAATAAA
Found at i:7823356 original size:17 final size:20
Alignment explanation
Indices: 7823342--7823378 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7823332 TACCAATAAA
7823342 TTTAA-ATTATAAATAATAT
1 TTTAATATTATAAATAATAT
*
7823361 TTTAATATTATATATAAT
1 TTTAATATTATAAATAAT
7823379 TAATTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TTTAATATTATAAATAATAT
Found at i:7823359 original size:20 final size:20
Alignment explanation
Indices: 7823340--7823384 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
7823330 AGTACCAATA
7823340 AATTTAA-ATTATAAATAAT
1 AATTTAATATTATAAATAAT
* *
7823359 ATTTTAATATTATATATAATT
1 AATTTAATATTATAAATAA-T
7823380 AATTT
1 AATTT
7823385 TTTTGTTGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 6 0.29
20 10 0.48
21 5 0.24
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
AATTTAATATTATAAATAAT
Found at i:7823887 original size:25 final size:24
Alignment explanation
Indices: 7823844--7823901 Score: 66
Period size: 23 Copynumber: 2.4 Consensus size: 24
7823834 TTAAGAATGT
*
7823844 AAAAT-AATTTTGTTAATTAATATA
1 AAAATAAATTTTATTAATT-ATATA
7823868 CAAAATAAATTTTATT-ATTATATA
1 -AAAATAAATTTTATTAATTATATA
*
7823892 ATAATAAATT
1 AAAATAAATT
7823902 AATAAATAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 9 0.30
24 5 0.17
25 8 0.27
26 8 0.27
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (24 bp):
AAAATAAATTTTATTAATTATATA
Found at i:7823889 original size:22 final size:23
Alignment explanation
Indices: 7823859--7823901 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
7823849 AATTTTGTTA
7823859 ATTAATATACAA-AATAAATTTT
1 ATTAATATACAATAATAAATTTT
* *
7823881 ATTATTATATAATAATAAATT
1 ATTAATATACAATAATAAATT
7823902 AATAAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (23 bp):
ATTAATATACAATAATAAATTTT
Found at i:7823938 original size:36 final size:36
Alignment explanation
Indices: 7823870--7823983 Score: 158
Period size: 36 Copynumber: 3.1 Consensus size: 36
7823860 TTAATATACA
7823870 AAATAAATTTTATTATTATATAATAATAAATTAATAAAT
1 AAATAAATTTTATTATTATAT--T-ATAAATTAATAAAT
*
7823909 AAATATAA-TTTATTATTATATTATGAATTAATAAAT
1 AAATA-AATTTTATTATTATATTATAAATTAATAAAT
* *
7823945 AAATAAATTTTATTATTATATAATAAACTAATAAAT
1 AAATAAATTTTATTATTATATTATAAATTAATAAAT
7823981 AAA
1 AAA
7823984 ATTAATTATT
Statistics
Matches: 69, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
35 2 0.03
36 46 0.67
37 1 0.01
39 18 0.26
40 2 0.03
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (36 bp):
AAATAAATTTTATTATTATATTATAAATTAATAAAT
Found at i:7823983 original size:32 final size:32
Alignment explanation
Indices: 7823870--7824000 Score: 127
Period size: 32 Copynumber: 3.8 Consensus size: 32
7823860 TTAATATACA
7823870 AAATAAATTTTATTATTATATAATAATAAATTAAT
1 AAATAAATTTTATTATTATATAAT-A-AAA-TAAT
*
7823905 AAATAAATATAATTTATTATTATATTATGAATTAATAAAT
1 AAAT-AA-AT--TTTATTATTATATAAT-AA--AAT-AAT
*
7823945 AAATAAATTTTATTATTATATAATAAACTAAT
1 AAATAAATTTTATTATTATATAATAAAATAAT
* *
7823977 AAATAAAATTAATTATTATATAAT
1 AAATAAATTTTATTATTATATAAT
7824001 TAATGAGTTA
Statistics
Matches: 83, Mismatches: 6, Indels: 17
0.78 0.06 0.16
Matches are distributed among these distances:
32 25 0.30
33 2 0.02
35 6 0.07
36 17 0.20
37 2 0.02
38 3 0.04
39 19 0.23
40 9 0.11
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (32 bp):
AAATAAATTTTATTATTATATAATAAAATAAT
Found at i:7825815 original size:17 final size:17
Alignment explanation
Indices: 7825777--7825809 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
7825767 AAAATGGGTT
7825777 AAAAATAAAATAAAATC
1 AAAAATAAAATAAAATC
7825794 AAAAATAAAATAAAAT
1 AAAAATAAAATAAAAT
7825810 AGAAAAGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (17 bp):
AAAAATAAAATAAAATC
Found at i:7826216 original size:11 final size:10
Alignment explanation
Indices: 7826163--7826212 Score: 64
Period size: 10 Copynumber: 5.0 Consensus size: 10
7826153 AACCAAACCT
7826163 AAAAAAATCC
1 AAAAAAATCC
*
7826173 AAAAAAATTC
1 AAAAAAATCC
* *
7826183 TAAAAAATTC
1 AAAAAAATCC
*
7826193 TAAAAAATCC
1 AAAAAAATCC
7826203 AAAAAAATCC
1 AAAAAAATCC
7826213 CAAATGGTTC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 36 1.00
ACGTcount: A:0.66, C:0.16, G:0.00, T:0.18
Consensus pattern (10 bp):
AAAAAAATCC
Found at i:7826262 original size:21 final size:20
Alignment explanation
Indices: 7826236--7826278 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
7826226 GCTTCCCTGA
7826236 ACCTCCTACAACCCTAAATTC
1 ACCTCC-ACAACCCTAAATTC
* *
7826257 ACCTCCAGAATCCTAAATTC
1 ACCTCCACAACCCTAAATTC
7826277 AC
1 AC
7826279 TCTTAAAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.35, C:0.40, G:0.02, T:0.23
Consensus pattern (20 bp):
ACCTCCACAACCCTAAATTC
Found at i:7826660 original size:3 final size:3
Alignment explanation
Indices: 7826654--7826703 Score: 73
Period size: 3 Copynumber: 16.7 Consensus size: 3
7826644 AAAATAAAAA
* * *
7826654 AAT AAT AAT AAT AAT AGT AAT AAT AAT AAA AAT AAT AAT GAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7826702 AA
1 AA
7826704 ATAAGTTAAC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:7827224 original size:114 final size:115
Alignment explanation
Indices: 7827067--7827530 Score: 405
Period size: 114 Copynumber: 4.1 Consensus size: 115
7827057 ATCAAATAAG
* * * ** * **
7827067 TGACTGGGACGATGTCACGAGCCTGAAGGTGACCAAGA-CTGAGTCGAGATCGTAAATAAATTAT
1 TGACTGGGATGATGTCACAAGTCAAAAGATGACCAAGATC-GAGTCGAGATCAAAAATAAATTAT
* * * *
7827131 TGAACTGATGTCGCGAGTCTGACAAG--GATCTGACATGAGTCAATATCAAA
65 CGAACTGATGTCGCGGGTCTGA-AAGATGATCTTACATGAGTCAAGATCAAA
* * * ** * *
7827181 TGACTGGGATAATGTCACAAGTCAAAAGATGACCAAGATTGAGTCGAGGTTGAAAAT-GACTA--
1 TGACTGGGATGATGTCACAAGTCAAAAGATGACCAAGATCGAGTCGAGATCAAAAATAAATTATC
* * * *
7827243 G-ATTGATGTCGCGGGTCT-AAAAATGATCTTACATAAGTCGAGATCAAA
66 GAACTGATGTCGCGGGTCTGAAAGATGATCTTACATGAGTCAAGATCAAA
* * * * *
7827291 TGACTAGGATGATGCCACAAGTCGAAAAG-TTACCAAGATCAAGTC-AAAGTCAAAAATAAATTA
1 TGACTGGGATGATGTCACAAGTC-AAAAGATGACCAAGATCGAGTCGAGA-TCAAAAATAAATTA
* ** * *
7827354 TCGGACTGATGTCATGGGTCT-AAATATGATCTTACATGAGTCGAGATCAAA
64 TCGAACTGATGTCGCGGGTCTGAAAGATGATCTTACATGAGTCAAGATCAAA
* * ** ** * *
7827405 TGATTGGGACGATGTTGCAAGTTGAAAGATGACCAAGATCGAGTCAAGATCAAAAATAAATGATC
1 TGACTGGGATGATGTCACAAGTCAAAAGATGACCAAGATCGAGTCGAGATCAAAAATAAATTATC
* * *
7827470 GAACTAATGTCGCGGGTTTG-AAGATGATCTAACATGAGTCAAGATCAAA
66 GAACTGATGTCGCGGGTCTGAAAGATGATCTTACATGAGTCAAGATCAAA
7827519 TGACT-GGATGAT
1 TGACTGGGATGAT
7827531 ACCGTAAGTC
Statistics
Matches: 279, Mismatches: 59, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
108 2 0.01
109 2 0.01
110 74 0.27
111 9 0.03
113 14 0.05
114 176 0.63
115 2 0.01
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (115 bp):
TGACTGGGATGATGTCACAAGTCAAAAGATGACCAAGATCGAGTCGAGATCAAAAATAAATTATC
GAACTGATGTCGCGGGTCTGAAAGATGATCTTACATGAGTCAAGATCAAA
Found at i:7827951 original size:69 final size:70
Alignment explanation
Indices: 7827881--7828161 Score: 320
Period size: 69 Copynumber: 4.1 Consensus size: 70
7827871 TTTTAGATTC
* * *
7827881 GCAAAGATACAAGGTTCGCAAAGACTTTCAGATTCATAAGAAAAG-AAGATTCACAAGATTCCTA
1 GCAAAGATACAAGGTTCGCAAAGACTTTCAGATTCACAAGAAAAGAAAGATTCTCAAGATTCCAA
*
7827945 GTTTC
66 GTTTT
* * * * ** * *
7827950 GCAAAGGTGCAAGGTTTGCAATGACTTTCAGATTCGTAAGAAAA-AAATATTCTCAAGATTCTAA
1 GCAAAGATACAAGGTTCGCAAAGACTTTCAGATTCACAAGAAAAGAAAGATTCTCAAGATTCCAA
7828014 GTTTT
66 GTTTT
* * * ** *
7828019 GTAAAAATACAAGGTTCGCAAAGACTTTCAGGTTTGCAAG-AAAGAAAGATTCTCAAGATTTCAA
1 GCAAAGATACAAGGTTCGCAAAGACTTTCAGATTCACAAGAAAAGAAAGATTCTCAAGATTCCAA
7828083 GTTTT
66 GTTTT
* * * *
7828088 GCAAAGGTGCAAGGTTCGCAAGGACTTTCAGATTCACAA-AAAAGAAAGATT-TGCAAGATGCCA
1 GCAAAGATACAAGGTTCGCAAAGACTTTCAGATTCACAAGAAAAGAAAGATTCT-CAAGATTCCA
7828151 AGTTTT
65 AGTTTT
7828157 GCAAA
1 GCAAA
7828162 AAATGTAAGG
Statistics
Matches: 176, Mismatches: 32, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
68 4 0.02
69 172 0.98
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.27
Consensus pattern (70 bp):
GCAAAGATACAAGGTTCGCAAAGACTTTCAGATTCACAAGAAAAGAAAGATTCTCAAGATTCCAA
GTTTT
Found at i:7828089 original size:34 final size:34
Alignment explanation
Indices: 7827987--7828091 Score: 90
Period size: 34 Copynumber: 3.1 Consensus size: 34
7827977 TCAGATTCGT
* *
7827987 AAGAAAAAAATATTCTCAAGA-TTCTAAGTTTTGT
1 AAGAAAAAAAGATTCTCAAGATTTC-AAGTTTTGC
* * * *
7828021 AA-AAATACAAGGTTCGCAAAGACTTTC-AGGTTTGC
1 AAGAAA-AAAAGATTCTC-AAGA-TTTCAAGTTTTGC
*
7828056 AAGAAAGAAAGATTCTCAAGATTTCAAGTTTTGC
1 AAGAAAAAAAGATTCTCAAGATTTCAAGTTTTGC
7828090 AA
1 AA
7828092 AGGTGCAAGG
Statistics
Matches: 54, Mismatches: 11, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
33 7 0.13
34 22 0.41
35 19 0.35
36 3 0.06
37 3 0.06
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (34 bp):
AAGAAAAAAAGATTCTCAAGATTTCAAGTTTTGC
Found at i:7828145 original size:138 final size:139
Alignment explanation
Indices: 7827887--7828187 Score: 367
Period size: 138 Copynumber: 2.2 Consensus size: 139
7827877 ATTCGCAAAG
* *
7827887 ATACAAGGTTCGCAAAGACTTTCAGATTCATAAGAAAAGAAGATTCACAAGATTCCTAGTTTCGC
1 ATACAAGGTTCGCAAAGACTTTCAGATTCACAAGAAAAGAAGATTCACAAGATTCCAAGTTTCGC
* * ** * * *
7827952 AAAGGTGCAAGGTTTGCAATGACTTTCAGATTCGTAAGAAAAAAATATTCTCAAGATTCTAAGTT
66 AAAGGTGCAAGGTTCGCAAGGACTTTCAGATTCACAAGAAAAAAAGATTCTCAAGATGCCAAGTT
*
7828017 TTG-TAAAA
131 TTGCAAAAA
* ** * * *
7828025 ATACAAGGTTCGCAAAGACTTTCAGGTTTGCAAG-AAAGAAAGATTCTCAAGATTTCAAGTTTTG
1 ATACAAGGTTCGCAAAGACTTTCAGATTCACAAGAAAAG-AAGATTCACAAGATTCCAAGTTTCG
7828089 CAAAGGTGCAAGGTTCGCAAGGACTTTCAGATTCACAA-AAAAGAAAGATT-TGCAAGATGCCAA
65 CAAAGGTGCAAGGTTCGCAAGGACTTTCAGATTCACAAGAAAA-AAAGATTCT-CAAGATGCCAA
7828152 GTTTTGCAAAAA
128 GTTTTGCAAAAA
** * *
7828164 ATGTAAGGTTCGCAAGGATTTTCA
1 ATACAAGGTTCGCAAAGACTTTCA
7828188 TCATAAGATT
Statistics
Matches: 139, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
137 9 0.06
138 106 0.76
139 24 0.17
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.28
Consensus pattern (139 bp):
ATACAAGGTTCGCAAAGACTTTCAGATTCACAAGAAAAGAAGATTCACAAGATTCCAAGTTTCGC
AAAGGTGCAAGGTTCGCAAGGACTTTCAGATTCACAAGAAAAAAAGATTCTCAAGATGCCAAGTT
TTGCAAAAA
Found at i:7829289 original size:28 final size:28
Alignment explanation
Indices: 7829229--7829292 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
7829219 TTTAAGTTTC
*
7829229 TTTTTTTTCTTTTTTTTGTTTATTTATT
1 TTTTTTTTCTTTTTTTTGCTTATTTATT
* *
7829257 ATTTTTTTCTTTTTTTTTGCTT-TTTGTT
1 TTTTTTTTC-TTTTTTTTGCTTATTTATT
7829285 TTTTTTTT
1 TTTTTTTT
7829293 TTTGTACACC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 20 0.65
29 11 0.35
ACGTcount: A:0.05, C:0.05, G:0.05, T:0.86
Consensus pattern (28 bp):
TTTTTTTTCTTTTTTTTGCTTATTTATT
Found at i:7829307 original size:1 final size:1
Alignment explanation
Indices: 7829229--7829295 Score: 53
Period size: 1 Copynumber: 67.0 Consensus size: 1
7829219 TTTAAGTTTC
* * * * * * ** *
7829229 TTTTTTTTCTTTTTTTTGTTTATTTATTATTTTTTTCTTTTTTTTTGCTTTTTGTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
7829294 TT
1 TT
7829296 GTACACCTTT
Statistics
Matches: 49, Mismatches: 17, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 49 1.00
ACGTcount: A:0.04, C:0.04, G:0.04, T:0.87
Consensus pattern (1 bp):
T
Found at i:7829590 original size:13 final size:12
Alignment explanation
Indices: 7829574--7829608 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
7829564 CCCATCAATT
7829574 TTTTTTTCTTTTA
1 TTTTTTT-TTTTA
7829587 TTTTTTATTTTTA
1 TTTTTT-TTTTTA
7829600 TTTTTTTTT
1 TTTTTTTTT
7829609 GTGGAACACA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 3 0.14
13 17 0.81
14 1 0.05
ACGTcount: A:0.09, C:0.03, G:0.00, T:0.89
Consensus pattern (12 bp):
TTTTTTTTTTTA
Found at i:7832001 original size:20 final size:21
Alignment explanation
Indices: 7831960--7832002 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
7831950 GGATCTATCA
7831960 AATGATGTATGAGAATGAATGC
1 AATGATGTAT-AGAATGAATGC
*
7831982 AATGATGTAT-GAATGCATGC
1 AATGATGTATAGAATGAATGC
7832002 A
1 A
7832003 TATATAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
22 10 0.50
ACGTcount: A:0.40, C:0.07, G:0.26, T:0.28
Consensus pattern (21 bp):
AATGATGTATAGAATGAATGC
Found at i:7833174 original size:18 final size:18
Alignment explanation
Indices: 7833137--7833185 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 18
7833127 AAATGGGTTA
7833137 AAAATAAAATC---AAAT
1 AAAATAAAATCAAAAAAT
* *
7833152 TAAATCAAATCAAAAAAT
1 AAAATAAAATCAAAAAAT
*
7833170 AAAATAAAATGAAAAA
1 AAAATAAAATCAAAAA
7833186 GAAAAAACCT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
15 9 0.35
18 17 0.65
ACGTcount: A:0.73, C:0.06, G:0.02, T:0.18
Consensus pattern (18 bp):
AAAATAAAATCAAAAAAT
Found at i:7833541 original size:19 final size:19
Alignment explanation
Indices: 7833517--7833553 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
7833507 GTTGTTAAAA
7833517 ACTTCATCGAAAAATTCAT
1 ACTTCATCGAAAAATTCAT
7833536 ACTTCATCGAAAAATTCA
1 ACTTCATCGAAAAATTCA
7833554 ACCAAACCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.43, C:0.22, G:0.05, T:0.30
Consensus pattern (19 bp):
ACTTCATCGAAAAATTCAT
Found at i:7834035 original size:3 final size:3
Alignment explanation
Indices: 7834029--7834066 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
7834019 AGAAAAAGAG
7834029 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7834067 ACAAGTTAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7834287 original size:17 final size:17
Alignment explanation
Indices: 7834265--7834298 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7834255 CTATGTCCTA
* *
7834265 AGGTTAGTCTAATAGTT
1 AGGTTAGCCTAAAAGTT
7834282 AGGTTAGCCTAAAAGTT
1 AGGTTAGCCTAAAAGTT
7834299 GAAAATGTCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.09, G:0.24, T:0.35
Consensus pattern (17 bp):
AGGTTAGCCTAAAAGTT
Found at i:7835484 original size:9 final size:9
Alignment explanation
Indices: 7835472--7835505 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
7835462 GTCTGAGAAG
*
7835472 TCTTTTACC
1 TCTTTTTCC
7835481 TCTTTTTCC
1 TCTTTTTCC
*
7835490 TTTTTTTCC
1 TCTTTTTCC
7835499 TCTTTTT
1 TCTTTTT
7835506 TTTCCTTTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.03, C:0.26, G:0.00, T:0.71
Consensus pattern (9 bp):
TCTTTTTCC
Found at i:7841227 original size:10 final size:10
Alignment explanation
Indices: 7841203--7841232 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
7841193 TATTTTATCA
7841203 ATTAAAATA-
1 ATTAAAATAT
7841212 ATTAAAATAT
1 ATTAAAATAT
7841222 ATTAAAATAT
1 ATTAAAATAT
7841232 A
1 A
7841233 AAAGCTTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
ATTAAAATAT
Found at i:7845791 original size:13 final size:16
Alignment explanation
Indices: 7845761--7845793 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
7845751 TTGATATTCT
7845761 AAAAGAATACAATAAA
1 AAAAGAATACAATAAA
7845777 AAAAG-ATAC-ATAAA
1 AAAAGAATACAATAAA
7845791 AAA
1 AAA
7845794 TTAAATTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 4 0.24
16 5 0.29
ACGTcount: A:0.76, C:0.06, G:0.06, T:0.12
Consensus pattern (16 bp):
AAAAGAATACAATAAA
Found at i:7848268 original size:166 final size:170
Alignment explanation
Indices: 7847964--7848309 Score: 445
Period size: 166 Copynumber: 2.1 Consensus size: 170
7847954 GTTTTTTAGC
* * * * *
7847964 ATAATTTTACTCAAGTAAGACTTTGAACATGATTTTTTTTAAGTTTAAATTTAATTTGACTCGAC
1 ATAATTTTATTCAAGTAAGACTTTGAACATGATATATTTTAAGCTTAAACTTAATTTGACTCGAC
* *
7848029 TTAAAATATTATTATATTAATAAATAATATTTTTATTTAATTTTACTTAAAAAATTAAAATATTA
66 TTAAAATATTATTATATTAATAAACAATATATTTATTTAATTTTACTTAAAAAATTAAAATATTA
* *
7848094 ATATTAAAAGTCTTTTAAT-ATTATAATGTTAAATATTTTT
131 ACATTAAAAGTCTTTTAATAATT-CAATGTTAAATATTTTT
* * *
7848134 ATAATTTTATTCAAGTAAGATTTTGAACAT-A-ATATTTTAAGCTTAAACTTGATTTGATTCTG-
1 ATAATTTTATTCAAGTAAGACTTTGAACATGATATATTTTAAGCTTAAACTTAATTTGACTC-GA
* * * * *
7848196 CTTGAAATATTATTATATTAAT-ACCAATA-ATTTATTTTATTTTATTTAAAAAGTTAAAATATT
65 CTTAAAATATTATTATATTAATAAACAATATATTTATTTAATTTTACTTAAAAAATTAAAATATT
* *
7848259 AACATTAAAAGTCTTTTGATAATTCAATTTTAAATATTTTT
130 AACATTAAAAGTCTTTTAATAATTCAATGTTAAATATTTTT
*
7848300 AT-TTTTTATT
1 ATAATTTTATT
7848310 ATTAAAAATT
Statistics
Matches: 154, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
165 7 0.05
166 65 0.42
167 8 0.05
168 44 0.29
169 2 0.01
170 28 0.18
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.49
Consensus pattern (170 bp):
ATAATTTTATTCAAGTAAGACTTTGAACATGATATATTTTAAGCTTAAACTTAATTTGACTCGAC
TTAAAATATTATTATATTAATAAACAATATATTTATTTAATTTTACTTAAAAAATTAAAATATTA
ACATTAAAAGTCTTTTAATAATTCAATGTTAAATATTTTT
Found at i:7848574 original size:34 final size:33
Alignment explanation
Indices: 7848525--7848602 Score: 95
Period size: 34 Copynumber: 2.3 Consensus size: 33
7848515 ATATTACTAT
***
7848525 TTTAATAATCAATATAAATAAACTTTTTGTTATGA
1 TTTAATAAT-AATATAAA-AAAAAATTTGTTATGA
7848560 -TTAATAATAGATATAAAAAAAAATTTGTTATGA
1 TTTAATAATA-ATATAAAAAAAAATTTGTTATGA
7848593 TTTAATAATA
1 TTTAATAATA
7848603 TTATTTAATA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
33 14 0.37
34 24 0.63
ACGTcount: A:0.49, C:0.03, G:0.06, T:0.42
Consensus pattern (33 bp):
TTTAATAATAATATAAAAAAAAATTTGTTATGA
Found at i:7848671 original size:15 final size:16
Alignment explanation
Indices: 7848634--7848674 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
7848624 AATATAAAAT
*
7848634 ATAAATACTTTAATAG
1 ATAAATATTTTAATAG
7848650 TATAAATATTTTAATA-
1 -ATAAATATTTTAATAG
7848666 ATAAATATT
1 ATAAATATT
7848675 GCTATTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.39
17 14 0.61
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (16 bp):
ATAAATATTTTAATAG
Found at i:7849556 original size:15 final size:16
Alignment explanation
Indices: 7849536--7849569 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
7849526 TTAATTTGAA
7849536 AATATAAAA-AATTAT
1 AATATAAAATAATTAT
7849551 AATATAAAATAATTAT
1 AATATAAAATAATTAT
7849567 AAT
1 AAT
7849570 TTTAAAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AATATAAAATAATTAT
Found at i:7850178 original size:16 final size:16
Alignment explanation
Indices: 7850159--7850211 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
7850149 TTTTTTAATT
7850159 TAATATAATAAATAAA
1 TAATATAATAAATAAA
7850175 TAATATAA-AAATATTAA
1 TAATATAATAAATA--AA
*
7850192 T-ATATATATATATAAA
1 TAATATA-ATAAATAAA
7850208 TAAT
1 TAAT
7850212 TTATCAATAC
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
15 5 0.16
16 16 0.52
17 6 0.19
18 4 0.13
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
TAATATAATAAATAAA
Found at i:7857202 original size:38 final size:39
Alignment explanation
Indices: 7857124--7857207 Score: 91
Period size: 38 Copynumber: 2.2 Consensus size: 39
7857114 TTAAATTTGA
** *
7857124 TTTTATATTTATAATATTTAAATTCAATTTGATTTAATT
1 TTTTATATTTATAATATTTAAATTCAATTCAATTCAATT
* *
7857163 TTTTATATTT-TTATATTTGAAATT-AATTCAATTCGATT
1 TTTTATATTTATAATATTT-AAATTCAATTCAATTCAATT
*
7857201 TTATATA
1 TTTTATA
7857208 AAATCATATT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
38 23 0.61
39 15 0.39
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.58
Consensus pattern (39 bp):
TTTTATATTTATAATATTTAAATTCAATTCAATTCAATT
Found at i:7857292 original size:20 final size:20
Alignment explanation
Indices: 7857252--7857289 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7857242 TAAAATTTTA
7857252 TTTTTAATATAAAATATAAT
1 TTTTTAATATAAAATATAAT
*
7857272 TTTTTAATGT-AAATATAA
1 TTTTTAATATAAAATATAA
7857290 ATTAAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (20 bp):
TTTTTAATATAAAATATAAT
Found at i:7857770 original size:21 final size:22
Alignment explanation
Indices: 7857730--7857777 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
7857720 AAAATTTTAA
*
7857730 AAAAATTCTAAAATTGTTTTTT
1 AAAAATTCTAAAATTATTTTTT
*
7857752 AAAAATTTTAAAA-TATTTTTT
1 AAAAATTCTAAAATTATTTTTT
7857773 AAAAA
1 AAAAA
7857778 ATGAAAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (22 bp):
AAAAATTCTAAAATTATTTTTT
Found at i:7857778 original size:22 final size:22
Alignment explanation
Indices: 7857724--7857779 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
7857714 TATAATAAAA
*
7857724 TTTTAAAAAAATTCTAAAATTG
1 TTTTTAAAAAATTCTAAAATTG
* *
7857746 TTTTTTAAAAATTTTAAAATAT-
1 TTTTTAAAAAATTCTAAAAT-TG
7857768 TTTTTAAAAAAT
1 TTTTTAAAAAAT
7857780 GAAAATTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 28 0.97
23 1 0.03
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
TTTTTAAAAAATTCTAAAATTG
Found at i:7857784 original size:20 final size:21
Alignment explanation
Indices: 7857746--7857785 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7857736 TCTAAAATTG
* *
7857746 TTTTTTAAAAATTTTAAAATA
1 TTTTTTAAAAATATGAAAATA
7857767 TTTTTTAAAAA-ATGAAAAT
1 TTTTTTAAAAATATGAAAAT
7857786 TTTAATAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (21 bp):
TTTTTTAAAAATATGAAAATA
Found at i:7857930 original size:19 final size:19
Alignment explanation
Indices: 7857890--7857954 Score: 53
Period size: 19 Copynumber: 3.5 Consensus size: 19
7857880 AGCTAAATTT
* *
7857890 TTTATCAAAAA-TCCGAATA
1 TTTAT-AAAAATTCCAAAAA
* *
7857909 TTTATTAAAATTCCTAAAA
1 TTTATAAAAATTCCAAAAA
* *
7857928 TTTCTAAAAATTTCAAAAA
1 TTTATAAAAATTCCAAAAA
7857947 TTTA-AAAA
1 TTTATAAAA
7857955 TATGAAATAT
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
18 8 0.22
19 29 0.78
ACGTcount: A:0.51, C:0.11, G:0.02, T:0.37
Consensus pattern (19 bp):
TTTATAAAAATTCCAAAAA
Found at i:7858040 original size:18 final size:17
Alignment explanation
Indices: 7858004--7858056 Score: 61
Period size: 17 Copynumber: 2.9 Consensus size: 17
7857994 ATTTAATAAA
* *
7858004 AAAAAATTAAAAACTAT
1 AAAAAATAAAAAATTAT
7858021 AAAAAATAAAAAATTCAT
1 AAAAAATAAAAAATT-AT
7858039 AAAATATATAAAAAATTA
1 AAAA-A-ATAAAAAATTA
7858057 AAATTGTAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 13 0.42
18 6 0.19
19 2 0.06
20 10 0.32
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.25
Consensus pattern (17 bp):
AAAAAATAAAAAATTAT
Found at i:7858240 original size:16 final size:17
Alignment explanation
Indices: 7858190--7858244 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
7858180 GTGAACACTT
**
7858190 TTTTGAATTTTACCAAAA
1 TTTT-AATTTTATTAAAA
7858208 TTTTAATTTTATTAAAA
1 TTTTAATTTTATTAAAA
**
7858225 TTTTCCTTTT-TTAAAA
1 TTTTAATTTTATTAAAA
7858241 TTTT
1 TTTT
7858245 TTTGGATTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
16 10 0.30
17 19 0.58
18 4 0.12
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.58
Consensus pattern (17 bp):
TTTTAATTTTATTAAAA
Found at i:7858304 original size:19 final size:18
Alignment explanation
Indices: 7858280--7858346 Score: 68
Period size: 17 Copynumber: 3.8 Consensus size: 18
7858270 ATTTTTTAAG
*
7858280 TTTTTATTATTTAAAATTT
1 TTTTTAATATTT-AAATTT
*
7858299 TTTTTAATATTTCAA-TT
1 TTTTTAATATTTAAATTT
7858316 TTTTTAAT-TTTATAA-TT
1 TTTTTAATATTTA-AATTT
*
7858333 TTTATAATATTTAA
1 TTTTTAATATTTAA
7858347 GACTTTTGAA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
16 3 0.07
17 22 0.52
18 6 0.14
19 11 0.26
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTTTAATATTTAAATTT
Found at i:7858372 original size:39 final size:38
Alignment explanation
Indices: 7858321--7858409 Score: 99
Period size: 39 Copynumber: 2.3 Consensus size: 38
7858311 CAATTTTTTT
* *
7858321 AATTTTATAATTTTTATAATATTTAAGACT-TTTGAAA
1 AATTTTTTAATTTTTATAATATTTAAGAATATTTGAAA
* * * *
7858358 AATATTTTTGAATTTTTTTAATTTTTTAGAATATTTTAAA
1 AAT-TTTTT-AATTTTTATAATATTTAAGAATATTTGAAA
7858398 AATTTTTTAATT
1 AATTTTTTAATT
7858410 GTTGACATGG
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
37 3 0.07
38 8 0.19
39 23 0.53
40 9 0.21
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.57
Consensus pattern (38 bp):
AATTTTTTAATTTTTATAATATTTAAGAATATTTGAAA
Found at i:7861102 original size:19 final size:19
Alignment explanation
Indices: 7861071--7861118 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
7861061 TAAAATTAAT
*
7861071 TACATTAA-AAATAAATAA
1 TACATTAATTAATAAATAA
*
7861089 TACATTAATTAATAAATTA
1 TACATTAATTAATAAATAA
7861108 TA-ATTCAATTA
1 TACATT-AATTA
7861119 TTATATTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 11 0.42
19 15 0.58
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (19 bp):
TACATTAATTAATAAATAA
Found at i:7862985 original size:13 final size:14
Alignment explanation
Indices: 7862961--7862989 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
7862951 TATTTAAAGT
7862961 AAAATGTAAAATAA
1 AAAATGTAAAATAA
7862975 AAAATGT-AAATAA
1 AAAATGTAAAATAA
7862988 AA
1 AA
7862990 GTTAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.21
Consensus pattern (14 bp):
AAAATGTAAAATAA
Found at i:7864378 original size:57 final size:57
Alignment explanation
Indices: 7864315--7864496 Score: 215
Period size: 58 Copynumber: 3.1 Consensus size: 57
7864305 TTATACAAAG
* * *
7864315 AAAATTGATACTTTCAACTTTTTCTC-AAAATATTTTTTAGAAACTTTAATTTCGAGT
1 AAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAAAAAC-TTAATTTCAAGA
* * * *
7864372 AAAATTGATACTTTCAACTTTCTCTCAAAAATCTATTTTTAAAAACTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTTCTCAAAAATAT-TTTTTAAAAACTTAATTTCAAGA
* * *
7864430 AAAATTGATACTTTCAACCTTTTT-TCAAAAATATTTTTTTAAAAAGCTTATTTTAAAGG
1 AAAATTGATACTTTCAA-CTTTTTCTCAAAAATA-TTTTTTAAAAA-CTTAATTTCAAGA
7864489 AAAATTGA
1 AAAATTGA
7864497 AAGCTTATTT
Statistics
Matches: 109, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
57 25 0.23
58 49 0.45
59 35 0.32
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.43
Consensus pattern (57 bp):
AAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAAAAACTTAATTTCAAGA
Found at i:7864504 original size:24 final size:24
Alignment explanation
Indices: 7864472--7864520 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
7864462 ATTTTTTTAA
*
7864472 AAAGCTTATTTTAAAGGAAAATTG
1 AAAGCTTATTTTAAAGAAAAATTG
*
7864496 AAAGCTTATTTTCAAGAAAAATTG
1 AAAGCTTATTTTAAAGAAAAATTG
7864520 A
1 A
7864521 TACTTTTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.47, C:0.06, G:0.14, T:0.33
Consensus pattern (24 bp):
AAAGCTTATTTTAAAGAAAAATTG
Found at i:7864661 original size:59 final size:58
Alignment explanation
Indices: 7864495--7864667 Score: 220
Period size: 62 Copynumber: 2.9 Consensus size: 58
7864485 AAGGAAAATT
* **
7864495 GAAAGCTTATTTTCAAGAAAAATTGATACTTTTAACTTTTTCTTTAAAATATTTTTTA
1 GAAAGCTTATTTTCAAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTA
* * * * *
7864553 GAAAAAAAACTTCTTCTCAAGGAAAATTGATACATTCAACTTTTTCTCAAAAATATTTTTTA
1 G----AAAGCTTATTTTCAAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTA
*
7864615 GAAAGCTTATTTTCAAGAAAAAATTGATACTTTCAACATTTTCTCAAAAATAT
1 GAAAGCTTATTTTCAAG-AAAAATTGATACTTTCAACTTTTTCTCAAAAATAT
7864668 ATATATATTT
Statistics
Matches: 96, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
58 14 0.15
59 32 0.33
62 50 0.52
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.40
Consensus pattern (58 bp):
GAAAGCTTATTTTCAAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTA
Found at i:7864742 original size:15 final size:15
Alignment explanation
Indices: 7864722--7864755 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
7864712 AAAAATAAGG
7864722 ATAAAAT-AGAATAAA
1 ATAAAATGAG-ATAAA
7864737 ATAAAATGAGATAAA
1 ATAAAATGAGATAAA
7864752 ATAA
1 ATAA
7864756 GAAATACTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 16 0.89
16 2 0.11
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.21
Consensus pattern (15 bp):
ATAAAATGAGATAAA
Found at i:7865675 original size:17 final size:17
Alignment explanation
Indices: 7865655--7865715 Score: 68
Period size: 17 Copynumber: 3.4 Consensus size: 17
7865645 TAATTAAAAG
7865655 AAAATATTAGATAAATA
1 AAAATATTAGATAAATA
7865672 AAAATATTAATAGATAAATA
1 AAAATA-T--TAGATAAATA
* *
7865692 ATAATAATAGATAAATA
1 AAAATATTAGATAAATA
*
7865709 ATAATAT
1 AAAATAT
7865716 ATAAATAGAT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
17 22 0.58
18 1 0.03
20 15 0.39
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (17 bp):
AAAATATTAGATAAATA
Found at i:7865692 original size:4 final size:4
Alignment explanation
Indices: 7865665--7865830 Score: 61
Period size: 4 Copynumber: 43.0 Consensus size: 4
7865655 AAAATATTAG
* * *
7865665 ATAA ATAA A-AA TATTA ATAG ATAA AT-A AT-A AT-A ATAG ATAA AT-A
1 ATAA ATAA ATAA -ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA
* * * * *
7865709 AT-A ATAT ATAA ATAG ATAA AT-A AT-A ATAA ATATA TATTA ACAG ATAA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA-A -ATAA ATAA ATAA
* * * *
7865756 ATAA A-AA AAATA AT-A ATAAA ATAA ATAT AT-A TTTA ATAA ATAGTA
1 ATAA ATAA ATA-A ATAA AT-AA ATAA ATAA ATAA ATAA ATAA ATA--A
*
7865801 AT-A ATAA ATAA ATAA AT-A ATAA ATAC ATAA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA
7865831 GGTGCAAAAA
Statistics
Matches: 122, Mismatches: 24, Indels: 32
0.69 0.13 0.18
Matches are distributed among these distances:
3 36 0.30
4 73 0.60
5 8 0.07
6 5 0.04
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (4 bp):
ATAA
Found at i:7865722 original size:28 final size:25
Alignment explanation
Indices: 7865665--7865830 Score: 87
Period size: 25 Copynumber: 6.4 Consensus size: 25
7865655 AAAATATTAG
*
7865665 ATAAATAA-AAATATTAATAGATAAAT
1 ATAAATAATAAA-ATAAATA-ATAAAT
*
7865691 A-ATAATAAT-AGATAAATAATAATAT
1 ATA-AATAATAAAATAAATAATAA-AT
7865716 ATAAATAGAT-AAAT-AATAATAAAT
1 ATAAATA-ATAAAATAAATAATAAAT
* * *
7865740 AT--ATATTAACAGATAAATAAAAAAA
1 ATAAATAATAA-A-ATAAATAATAAAT
**
7865765 AT-AATAATAAAATAAATATATATTT
1 ATAAATAATAAAATAAATA-ATAAAT
*
7865790 AATAAATAGTAATAATAAATAAATAAAT
1 -ATAAATAATAA-AATAAAT-AATAAAT
7865818 AATAAATACATAA
1 -ATAAATA-ATAA
7865831 GGTGCAAAAA
Statistics
Matches: 109, Mismatches: 15, Indels: 29
0.71 0.10 0.19
Matches are distributed among these distances:
21 1 0.01
22 4 0.04
23 1 0.01
24 17 0.16
25 35 0.32
26 21 0.19
27 7 0.06
28 19 0.17
29 4 0.04
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (25 bp):
ATAAATAATAAAATAAATAATAAAT
Found at i:7865759 original size:67 final size:65
Alignment explanation
Indices: 7865668--7865810 Score: 164
Period size: 67 Copynumber: 2.2 Consensus size: 65
7865658 ATATTAGATA
* * * *
7865668 AATAAAAATATTAATAGATAAATAATAATAATAGATAA-ATAAT-AATATATAAATAGATAAATA
1 AATAAAAATATTAACAGATAAATAAAAAAAATA-ATAATAAAATAAATATATAAATA-ATAAATA
7865731 AT
64 AT
**
7865733 AATAAATATATATTAACAGATAAATAAAAAAAATAATAATAAAATAAATATATATTTAATAAATA
1 AATAAA-A-ATATTAACAGATAAATAAAAAAAATAATAATAAAATAAATATATAAATAATAAATA
*
7865798 GT
64 AT
7865800 AATAATAAATA
1 AATAA-AAATA
7865811 AATAAATAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
65 6 0.09
66 8 0.12
67 41 0.62
68 11 0.17
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (65 bp):
AATAAAAATATTAACAGATAAATAAAAAAAATAATAATAAAATAAATATATAAATAATAAATAAT
Found at i:7865857 original size:14 final size:14
Alignment explanation
Indices: 7865838--7865881 Score: 65
Period size: 13 Copynumber: 3.3 Consensus size: 14
7865828 TAAGGTGCAA
7865838 AAAAATATAAATAT
1 AAAAATATAAATAT
7865852 AAAAATATAAATA-
1 AAAAATATAAATAT
*
7865865 AAAAATACAAA-AT
1 AAAAATATAAATAT
7865878 AAAA
1 AAAA
7865882 GTAAAATGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
12 1 0.04
13 14 0.50
14 13 0.46
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.20
Consensus pattern (14 bp):
AAAAATATAAATAT
Found at i:7865876 original size:20 final size:18
Alignment explanation
Indices: 7865839--7865887 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 18
7865829 AAGGTGCAAA
*
7865839 AAAATATAAATATAAAAAT
1 AAAATA-AAAAATAAAAAT
7865858 ATAAATAAAAAATACAAAAT
1 A-AAATAAAAAATA-AAAAT
7865878 AAAAGTAAAA
1 AAAA-TAAAA
7865888 TGAGCCTACC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (18 bp):
AAAATAAAAAATAAAAAT
Found at i:7866230 original size:41 final size:42
Alignment explanation
Indices: 7866068--7866492 Score: 380
Period size: 41 Copynumber: 9.9 Consensus size: 42
7866058 TTGATCAAAA
* * * *
7866068 CTCCTCTAAGCAGAAGCTCAATGACTTTGAAAAACATAAACAAAG
1 CTCCTCTAATCAGAGGCTCAACGACTTTG--AAA-ATAAATAAAG
* * * *
7866113 CTCTTCTAATCAGACGCTCGACGACTTTGAAAAACATAAACAAAG
1 CTCCTCTAATCAGAGGCTCAACGACTTTG--AAA-ATAAATAAAG
*
7866158 CTCCTCTAATTAGAGGCTCAACGACTTTGAAAATAAATAAAG
1 CTCCTCTAATCAGAGGCTCAACGACTTTGAAAATAAATAAAG
*
7866200 CTCCTCTAATCAGA-GCTCAACGACTTTGAAAATAAATAAAA
1 CTCCTCTAATCAGAGGCTCAACGACTTTGAAAATAAATAAAG
* *
7866241 CTCATCTAATCAGATGCTCAACGACTTTGAAAATAAATAAAG
1 CTCCTCTAATCAGAGGCTCAACGACTTTGAAAATAAATAAAG
** *
7866283 CTCCTCTAAAT-AGAGGCTCAATAAATTTGAAAATAAATAAACAAAG
1 CTCCTCT-AATCAGAGGCTCAACGACTTTGAAAATAAAT----AAAG
* ** *
7866329 CTCATCTAATCAGAGGCTTTACGACTTTAAAAAATAAATAAAG
1 CTCCTCTAATCAGAGGCTCAACGACTTT-GAAAATAAATAAAG
* * * *
7866372 CTCTTCTAATCAGAGGCTCAACAACTTTTAAAAATAAAT--TG
1 CTCCTCTAATCAGAGGCTCAACGAC-TTTGAAAATAAATAAAG
* * * *
7866413 CTCCTCTAAACAGAGGCATC-ACAACTTTGAAGAATAGAT--TG
1 CTCCTCTAATCAGAGGC-TCAACGACTTTGAA-AATAAATAAAG
* *
7866454 CTCCTCTAATCAGAGGCATC-ACAACTTTAAAAAATAAAT
1 CTCCTCTAATCAGAGGC-TCAACGACTTT-GAAAATAAAT
7866493 TGCTCATTGA
Statistics
Matches: 330, Mismatches: 38, Indels: 28
0.83 0.10 0.07
Matches are distributed among these distances:
40 5 0.02
41 101 0.31
42 81 0.25
43 41 0.12
44 3 0.01
45 68 0.21
46 22 0.07
47 9 0.03
ACGTcount: A:0.43, C:0.20, G:0.12, T:0.25
Consensus pattern (42 bp):
CTCCTCTAATCAGAGGCTCAACGACTTTGAAAATAAATAAAG
Found at i:7866271 original size:83 final size:84
Alignment explanation
Indices: 7866064--7866492 Score: 379
Period size: 83 Copynumber: 5.0 Consensus size: 84
7866054 AAATTTGATC
* * * * * * *
7866064 AAAACTCCTCTAAGCAGAAGCTCAATGACTTTGAAAAACATAAACAAAGCTCTTCTAATCAGACG
1 AAAACTCATCTAATCAGAGGCTCAACGACTTTG--AAA-ATAAATAAAGCTCCTCTAATCAGAGG
* * *
7866129 CTCGACGACTTTGAAAAACATAAAC
63 CTCAACAACTTTG--AAA-ATAAAT
* * *
7866154 AAAGCTCCTCTAATTAGAGGCTCAACGACTTTGAAAATAAATAAAGCTCCTCTAATCAGA-GCTC
1 AAAACTCATCTAATCAGAGGCTCAACGACTTTGAAAATAAATAAAGCTCCTCTAATCAGAGGCTC
*
7866218 AACGACTTTGAAAATAAAT
66 AACAACTTTGAAAATAAAT
*
7866237 AAAACTCATCTAATCAGATGCTCAACGACTTTGAAAATAAATAAAGCTCCTCTAAAT-AGAGGCT
1 AAAACTCATCTAATCAGAGGCTCAACGACTTTGAAAATAAATAAAGCTCCTCT-AATCAGAGGCT
* *
7866301 CAATAAATTTGAAAATAAAT
65 CAACAACTTTGAAAATAAAT
** * *
7866321 AAACAAAGCTCATCTAATCAGAGGCTTTACGACTTTAAAAAATAAATAAAGCTCTTCTAATCAGA
1 --A-AAA-CTCATCTAATCAGAGGCTCAACGACTTT-GAAAATAAATAAAGCTCCTCTAATCAGA
*
7866386 GGCTCAACAACTTTTAAAAATAAAT
61 GGCTCAACAAC-TTTGAAAATAAAT
** * * * * *
7866411 --TGCTCCTCTAAACAGAGGCATC-ACAACTTTGAAGAATAGAT--TGCTCCTCTAATCAGAGGC
1 AAAACTCATCTAATCAGAGGC-TCAACGACTTTGAA-AATAAATAAAGCTCCTCTAATCAGAGGC
*
7866471 ATC-ACAACTTTAAAAAATAAAT
64 -TCAACAACTTT-GAAAATAAAT
7866493 TGCTCATTGA
Statistics
Matches: 292, Mismatches: 34, Indels: 34
0.81 0.09 0.09
Matches are distributed among these distances:
81 3 0.01
82 32 0.11
83 61 0.21
84 54 0.18
85 1 0.00
86 14 0.05
87 25 0.09
88 31 0.11
89 31 0.11
90 40 0.14
ACGTcount: A:0.43, C:0.20, G:0.12, T:0.25
Consensus pattern (84 bp):
AAAACTCATCTAATCAGAGGCTCAACGACTTTGAAAATAAATAAAGCTCCTCTAATCAGAGGCTC
AACAACTTTGAAAATAAAT
Found at i:7867550 original size:25 final size:25
Alignment explanation
Indices: 7867496--7867555 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
7867486 GAGTCCTCAT
**
7867496 TTTTTATTCACTTTTTCTTTTCTTTT
1 TTTTT-TTCACTTTTTCTTTTCTTCA
7867522 TTTTTTTCACTTTTTTCTTTT-TTCA
1 TTTTTTTCAC-TTTTTCTTTTCTTCA
7867547 TTTTTTTCA
1 TTTTTTTCA
7867556 TTCAAGCATA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
25 16 0.52
26 15 0.48
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (25 bp):
TTTTTTTCACTTTTTCTTTTCTTCA
Found at i:7867553 original size:11 final size:12
Alignment explanation
Indices: 7867495--7867537 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
7867485 TGAGTCCTCA
*
7867495 TTTTTTATTCAC
1 TTTTTTTTTCAC
**
7867507 TTTTTCTTTTCTT
1 TTTTT-TTTTCAC
7867520 TTTTTTTTTCAC
1 TTTTTTTTTCAC
7867532 TTTTTT
1 TTTTTT
7867538 CTTTTTTCAT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
12 16 0.64
13 9 0.36
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTTTTTTCAC
Found at i:7867554 original size:16 final size:16
Alignment explanation
Indices: 7867507--7867554 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
7867497 TTTTATTCAC
* *
7867507 TTTTTCTTTTCTTTTTT
1 TTTTTCATTT-TTTTCT
*
7867524 TTTTTCACTTTTTTCT
1 TTTTTCATTTTTTTCT
7867540 TTTTTCATTTTTTTC
1 TTTTTCATTTTTTTC
7867555 ATTCAAGCAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
16 19 0.70
17 8 0.30
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTTCATTTTTTTCT
Found at i:7868497 original size:9 final size:9
Alignment explanation
Indices: 7868483--7868509 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
7868473 AGTATATATC
7868483 TGGCATTTA
1 TGGCATTTA
7868492 TGGCATTTA
1 TGGCATTTA
7868501 TGGCATTTA
1 TGGCATTTA
7868510 CGAGCATAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.11, G:0.22, T:0.44
Consensus pattern (9 bp):
TGGCATTTA
Found at i:7874803 original size:15 final size:15
Alignment explanation
Indices: 7874783--7874814 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7874773 CTTTGTTAAG
*
7874783 TGTAATGAGTAAGAA
1 TGTAATGAATAAGAA
7874798 TGTAATGAATAAGAA
1 TGTAATGAATAAGAA
7874813 TG
1 TG
7874815 CATGTATGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.25, T:0.28
Consensus pattern (15 bp):
TGTAATGAATAAGAA
Found at i:7878094 original size:158 final size:158
Alignment explanation
Indices: 7877806--7878126 Score: 588
Period size: 158 Copynumber: 2.0 Consensus size: 158
7877796 TTCTCAATTG
*
7877806 ACTCTAATACTTTTAGCAAAAAATTGAGAAAATTCTCTCACCTCAAGAGTATGCAAGAAAACCAC
1 ACTCTAATACTTTTAGCAAAAAATTAAGAAAATTCTCTCACCTCAAGAGTATGCAAGAAAACCAC
*
7877871 TGTTTCACTTACAGAGGCTCTATCGTCAGATTATTTAACATTAAAGAAAATTTAAGAAAATAAAA
66 TGTTTCACTTACAGAGGCTCTATCGTCAGATTATTTAACATTAAAGAAAATTCAAGAAAATAAAA
7877936 AGGAAAAAAATGATTGCTTTAGATATAA
131 AGGAAAAAAATGATTGCTTTAGATATAA
* *
7877964 ACTCTAATACTTTTGGCAAAAAATTAAGAAAATTCTCTCACCTCAAGAGTATGCAAGAAAACCAT
1 ACTCTAATACTTTTAGCAAAAAATTAAGAAAATTCTCTCACCTCAAGAGTATGCAAGAAAACCAC
* *
7878029 TGTTTCACTTATAGAGGCTCTATCGTCGGATTATTTAACATTAAAGAAAATTCAAGAAAATAAAA
66 TGTTTCACTTACAGAGGCTCTATCGTCAGATTATTTAACATTAAAGAAAATTCAAGAAAATAAAA
7878094 AGGAAAAAAATGATTGCTTTAGATATAA
131 AGGAAAAAAATGATTGCTTTAGATATAA
7878122 ACTCT
1 ACTCT
7878127 TTTCTGTTCA
Statistics
Matches: 157, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
158 157 1.00
ACGTcount: A:0.44, C:0.15, G:0.13, T:0.29
Consensus pattern (158 bp):
ACTCTAATACTTTTAGCAAAAAATTAAGAAAATTCTCTCACCTCAAGAGTATGCAAGAAAACCAC
TGTTTCACTTACAGAGGCTCTATCGTCAGATTATTTAACATTAAAGAAAATTCAAGAAAATAAAA
AGGAAAAAAATGATTGCTTTAGATATAA
Found at i:7878226 original size:58 final size:58
Alignment explanation
Indices: 7878157--7878437 Score: 295
Period size: 58 Copynumber: 4.7 Consensus size: 58
7878147 GCTTTTATAT
* *
7878157 AAGAAAAATTGATACTTTCAGCTTTCCTTCAAAAATTCATTTTT-GAAAACTTATTTTT
1 AAGAAAAATTGATACTTTCAACTTTCCTTCAAAAATT-ATTTTTAGAAAACTTATTTTC
* ** *
7878215 AAGGAAAATTGATACTTTCAACTTTTTTTCAAAAA-TATATTTTAGAAAGCTTATTTTC
1 AAGAAAAATTGATACTTTCAACTTTCCTTCAAAAATTAT-TTTTAGAAAACTTATTTTC
* *
7878273 AAGAAAAATTGATACTTTCAACTTT-TTCTCAAAAA-TAGTTTTTTAGAAAAAAAACTTATTCTC
1 AAGAAAAATTGATACTTTCAACTTTCCT-TCAAAAATTA--TTTTTAG----AAAACTTATTTTC
* * *
7878336 AAGGAAAATTGATACTTTCAACTTTTCCCT-AAAAA-TATTTTTTAGAAAGCTTATTTTC
1 AAGAAAAATTGATACTTTCAAC-TTTCCTTCAAAAATTA-TTTTTAGAAAACTTATTTTC
* *
7878394 AAGAAAAATTGGTACTTTCAACTTTTCTTCAAAAATATATTTTT
1 AAGAAAAATTGATACTTTCAACTTTCCTTCAAAAAT-TATTTTT
7878438 TTGAATTTTA
Statistics
Matches: 191, Mismatches: 18, Indels: 27
0.81 0.08 0.11
Matches are distributed among these distances:
56 2 0.01
57 12 0.06
58 112 0.59
59 11 0.06
60 3 0.02
62 8 0.04
63 39 0.20
64 4 0.02
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.42
Consensus pattern (58 bp):
AAGAAAAATTGATACTTTCAACTTTCCTTCAAAAATTATTTTTAGAAAACTTATTTTC
Found at i:7878307 original size:28 final size:27
Alignment explanation
Indices: 7878219--7878307 Score: 67
Period size: 28 Copynumber: 3.1 Consensus size: 27
7878209 ATTTTTAAGG
7878219 AAAATTGATACTTTCAACTTTTTTTC-A
1 AAAATTGATACTTTCAAC-TTTTTTCAA
* *
7878246 AAAA-T-ATATTTTAGAAAGCTTATTTTCAAGA
1 AAAATTGATACTTT--CAA-CTT-TTTTC-A-A
7878277 AAAATTGATACTTTCAACTTTTTCTCAA
1 AAAATTGATACTTTCAACTTTTT-TCAA
7878305 AAA
1 AAA
7878308 TAGTTTTTTA
Statistics
Matches: 48, Mismatches: 4, Indels: 19
0.68 0.06 0.27
Matches are distributed among these distances:
25 6 0.12
26 1 0.02
27 8 0.17
28 10 0.21
29 4 0.08
30 5 0.10
31 7 0.15
32 1 0.02
33 6 0.12
ACGTcount: A:0.40, C:0.12, G:0.06, T:0.42
Consensus pattern (27 bp):
AAAATTGATACTTTCAACTTTTTTCAA
Found at i:7878370 original size:121 final size:121
Alignment explanation
Indices: 7878157--7878430 Score: 382
Period size: 121 Copynumber: 2.3 Consensus size: 121
7878147 GCTTTTATAT
* * *** * *
7878157 AAGAAAAATTGATACTTTCAGCTTTCCTTCAAAAATTCATTTTT-G----AAAACTTATTTTTAA
1 AAGAAAAATTGATACTTTCAACTTTTCTTCAAAAATAGTTTTTTAGAAAAAAAACTTATTCTCAA
**
7878217 GGAAAATTGATACTTTCAACTTTTTTTCAAAAATATATTTTAGAAAGCTTATTTTC
66 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTAGAAAGCTTATTTTC
7878273 AAGAAAAATTGATACTTTCAACTTTT-TCTCAAAAATAGTTTTTTAGAAAAAAAACTTATTCTCA
1 AAGAAAAATTGATACTTTCAACTTTTCT-TCAAAAATAGTTTTTTAGAAAAAAAACTTATTCTCA
*
7878337 AGGAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTAGAAAGCTTATTTTC
65 AGGAAAATTGATACTTTCAACTTTTCCTC-AAAAATATATTTTAGAAAGCTTATTTTC
*
7878394 AAGAAAAATTGGTACTTTCAACTTTTCTTCAAAAATA
1 AAGAAAAATTGATACTTTCAACTTTTCTTCAAAAATA
7878431 TATTTTTTTG
Statistics
Matches: 139, Mismatches: 11, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
115 1 0.01
116 37 0.27
117 1 0.01
120 1 0.01
121 98 0.71
122 1 0.01
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.41
Consensus pattern (121 bp):
AAGAAAAATTGATACTTTCAACTTTTCTTCAAAAATAGTTTTTTAGAAAAAAAACTTATTCTCAA
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTAGAAAGCTTATTTTC
Found at i:7878466 original size:11 final size:11
Alignment explanation
Indices: 7878450--7878510 Score: 54
Period size: 11 Copynumber: 5.5 Consensus size: 11
7878440 GAATTTTATT
7878450 TAAAAA-AATAA
1 TAAAAATAA-AA
7878461 TAAAAATAAAA
1 TAAAAATAAAA
7878472 TAAAAATAAAAA
1 TAAAAAT-AAAA
**
7878484 TAAGGATAAAA
1 TAAAAATAAAA
*
7878495 -ATAGAATAAAA
1 TA-AAAATAAAA
7878506 TAAAA
1 TAAAA
7878511 TGAGATAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
10 1 0.02
11 29 0.69
12 12 0.29
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (11 bp):
TAAAAATAAAA
Found at i:7878470 original size:6 final size:6
Alignment explanation
Indices: 7878450--7878510 Score: 58
Period size: 6 Copynumber: 10.8 Consensus size: 6
7878440 GAATTTTATT
* **
7878450 TAAAAA -AATAA TAAAAA T-AAAA TAAAAA TAAAAA TAAGGA TAAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
*
7878496 T-AGAA T-AAAA TAAAA
1 TAAAAA TAAAAA TAAAA
7878511 TGAGATAAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
5 17 0.39
6 27 0.61
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (6 bp):
TAAAAA
Found at i:7878473 original size:5 final size:5
Alignment explanation
Indices: 7878454--7878523 Score: 52
Period size: 5 Copynumber: 13.4 Consensus size: 5
7878444 TTTATTTAAA
* * *
7878454 AAAAT AATA- AAAAT AAAAT AAAAAT AAAAAT AAGGAT AAAAAT AGAAT
1 AAAAT AAAAT AAAAT AAAAT -AAAAT -AAAAT AA-AAT -AAAAT AAAAT
* *
7878502 AAAAT AAAAT GAGAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AA
7878524 GAAATACTAA
Statistics
Matches: 51, Mismatches: 10, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
4 3 0.06
5 31 0.61
6 15 0.29
7 2 0.04
ACGTcount: A:0.74, C:0.00, G:0.07, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:7878483 original size:29 final size:28
Alignment explanation
Indices: 7878451--7878510 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 28
7878441 AATTTTATTT
*
7878451 AAAAAAATAATAAAAATAAAATAAAAATA
1 AAAAAAAGAATAAAAATAAAAT-AAAATA
* * *
7878480 AAAATAAGGATAAAAATAGAATAAAATA
1 AAAAAAAGAATAAAAATAAAATAAAATA
7878508 AAA
1 AAA
7878511 TGAGATAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 9 0.33
29 18 0.67
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (28 bp):
AAAAAAAGAATAAAAATAAAATAAAATA
Found at i:7879422 original size:42 final size:40
Alignment explanation
Indices: 7879376--7879490 Score: 131
Period size: 42 Copynumber: 2.8 Consensus size: 40
7879366 AATCAAATAA
* *
7879376 AAAAATGTTAATAGATAATTAAAAGAAAATAATTAGATAAAT
1 AAAAATATTAATAGATAAATAAAA-AAAATAA-TAGATAAAT
* *
7879418 AAAAATATTAATAGATAAATAATAATAATAATAGATAAAT
1 AAAAATATTAATAGATAAATAAAAAAAATAATAGATAAAT
* *
7879458 AATAATATATAAATAGATAAATAATAATAAATA
1 AA-AA-ATATTAATAGATAAATAA-AAAAAATA
7879491 TATATTAACA
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
40 11 0.18
41 8 0.13
42 38 0.61
43 5 0.08
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (40 bp):
AAAAATATTAATAGATAAATAAAAAAAATAATAGATAAAT
Found at i:7879434 original size:20 final size:20
Alignment explanation
Indices: 7879376--7879486 Score: 114
Period size: 20 Copynumber: 5.3 Consensus size: 20
7879366 AATCAAATAA
* *
7879376 AAAAATGTTAATAGATAATT
1 AAAAATATTAATAGATAAAT
* *
7879396 AAAAGAAAATAATTAGATAAAT
1 AAAA-ATATTAA-TAGATAAAT
7879418 AAAAATATTAATAGATAAAT
1 AAAAATATTAATAGATAAAT
* *
7879438 AATAATAATAATAGATAAAT
1 AAAAATATTAATAGATAAAT
*
7879458 AATAATATATAAATAGATAAAT
1 AA-AA-ATATTAATAGATAAAT
*
7879480 AATAATA
1 AAAAATA
7879487 AATATATATT
Statistics
Matches: 75, Mismatches: 12, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
20 36 0.48
21 11 0.15
22 28 0.37
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (20 bp):
AAAAATATTAATAGATAAAT
Found at i:7879439 original size:4 final size:4
Alignment explanation
Indices: 7879402--7879647 Score: 66
Period size: 4 Copynumber: 63.8 Consensus size: 4
7879392 AATTAAAAGA
* * * *
7879402 AAAT AATT AGAT AAAT AAA- AATAT TAAT AGAT AAAT -AAT -AAT -AAT
1 AAAT AAAT AAAT AAAT AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AAAT
* * *
7879447 -AAT AGAT AAAT -AAT -AAT ATAT AAAT AGAT AAAT -AAT -AAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
* * * * *
7879490 ATATAT TAAC AGAT AAAT AAAA AAAT -AAT -AAT AAAAT AAATCT ATAT
1 A-A-AT AAAT AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AAA--T AAAT
* * *
7879537 TAAT AAAT AGTAAT -AAT AAAT AAAT AAAT -AAT AAAT ACAT AAGGT ACAA-
1 AAAT AAAT A--AAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA-AT A-AAT
* * * *
7879586 AAA- AATAT AAAT AAAA AAAT ATAA- ATAT AAAT ATA- AAAT ACA- AAAT
1 AAAT AA-AT AAAT AAAT AAAT A-AAT AAAT AAAT AAAT AAAT AAAT AAAT
7879632 -AA- AAAT AAA- AAAT AAA
1 AAAT AAAT AAAT AAAT AAA
7879648 ATGAGCCTAC
Statistics
Matches: 178, Mismatches: 38, Indels: 52
0.66 0.14 0.19
Matches are distributed among these distances:
3 54 0.30
4 103 0.58
5 12 0.07
6 9 0.05
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.27
Consensus pattern (4 bp):
AAAT
Found at i:7879443 original size:3 final size:3
Alignment explanation
Indices: 7879415--7879570 Score: 64
Period size: 3 Copynumber: 46.7 Consensus size: 3
7879405 TAATTAGATA
* *
7879415 AAT AAA AAT ATT AAT AGAT AAAT AAT AAT AAT AAT AGAT AAAT AAT AAT
1 AAT AAT AAT AAT AAT A-AT -AAT AAT AAT AAT AAT A-AT -AAT AAT AAT
* * *
7879464 ATAT AAAT AGAT AAAT AAT AAT AAAT ATAT ATT AAC AGAT AAAT AA- AAA
1 A-AT -AAT A-AT -AAT AAT AAT -AAT A-AT AAT AAT A-AT -AAT AAT AAT
* * *
7879513 AAT AAT AAT AA- AAT AAAT CTAT ATT AAT AAAT AGT AAT AAT AAAT AAAT
1 AAT AAT AAT AAT AAT -AAT -AAT AAT AAT -AAT AAT AAT AAT -AAT -AAT
7879562 AAAT AAT AA
1 -AAT AAT AA
7879571 ATACATAAGG
Statistics
Matches: 120, Mismatches: 16, Indels: 34
0.71 0.09 0.20
Matches are distributed among these distances:
2 4 0.03
3 67 0.56
4 44 0.37
5 5 0.04
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:7879443 original size:14 final size:13
Alignment explanation
Indices: 7879415--7879578 Score: 106
Period size: 14 Copynumber: 12.2 Consensus size: 13
7879405 TAATTAGATA
*
7879415 AATAA-AAATATT
1 AATAATAAATAAT
7879427 AATAGATAAATAAT
1 AATA-ATAAATAAT
7879441 AATAAT-AATAGAT
1 AATAATAAATA-AT
7879454 AAATAAT-AATATAT
1 -AATAATAAATA-AT
7879468 AAATAGATAAATAAT
1 -AATA-ATAAATAAT
* *
7879483 AATAAATATATATT
1 AAT-AATAAATAAT
*
7879497 AACAGATAAATAA-
1 AATA-ATAAATAAT
*
7879510 AAAAAT-AATAAT
1 AATAATAAATAAT
*
7879522 AA-AATAAATCTAT
1 AATAATAAAT-AAT
* *
7879535 ATTAATAAATAGT
1 AATAATAAATAAT
7879548 AATAATAAATAAAT
1 AATAATAAAT-AAT
7879562 AAATAATAAATACAT
1 -AATAATAAATA-AT
7879577 AA
1 AA
7879579 GGTACAAAAA
Statistics
Matches: 123, Mismatches: 14, Indels: 28
0.75 0.08 0.17
Matches are distributed among these distances:
11 8 0.07
12 15 0.12
13 22 0.18
14 57 0.46
15 17 0.14
16 4 0.03
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.30
Consensus pattern (13 bp):
AATAATAAATAAT
Found at i:7879615 original size:16 final size:14
Alignment explanation
Indices: 7879584--7879643 Score: 70
Period size: 14 Copynumber: 4.4 Consensus size: 14
7879574 CATAAGGTAC
7879584 AAAAAAATATAAAT
1 AAAAAAATATAAAT
7879598 AAAAAAATATAAAT
1 AAAAAAATATAAAT
* *
7879612 ATAAATATA-AAAT
1 AAAAAAATATAAAT
* *
7879625 -ACAAAATAAAAAT
1 AAAAAAATATAAAT
7879638 AAAAAA
1 AAAAAA
7879644 TAAAATGAGC
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
12 5 0.13
13 8 0.21
14 25 0.66
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (14 bp):
AAAAAAATATAAAT
Found at i:7879641 original size:6 final size:6
Alignment explanation
Indices: 7879586--7879648 Score: 54
Period size: 6 Copynumber: 9.7 Consensus size: 6
7879576 TAAGGTACAA
* * *
7879586 AAAAAT ATAAATAA AAAAAT ATAAAT ATAAAT ATAAAAT ACAAAAT AAAAAT
1 AAAAAT A-AAA-AT AAAAAT AAAAAT AAAAAT A-AAAAT A-AAAAT AAAAAT
7879638 AAAAAAT AAAA
1 -AAAAAT AAAA
7879649 TGAGCCTACC
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
6 23 0.48
7 23 0.48
8 2 0.04
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.21
Consensus pattern (6 bp):
AAAAAT
Found at i:7879644 original size:20 final size:19
Alignment explanation
Indices: 7879586--7879648 Score: 81
Period size: 20 Copynumber: 3.2 Consensus size: 19
7879576 TAAGGTACAA
7879586 AAAAATATAAATAAAAAAAT
1 AAAAATATAAAT-AAAAAAT
* *
7879606 ATAAATATAAATATAAAAT
1 AAAAATATAAATAAAAAAT
*
7879625 ACAAAATAAAAATAAAAAAT
1 A-AAAATATAAATAAAAAAT
7879645 AAAA
1 AAAA
7879649 TGAGCCTACC
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
19 10 0.27
20 27 0.73
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.21
Consensus pattern (19 bp):
AAAAATATAAATAAAAAAT
Found at i:7880139 original size:209 final size:210
Alignment explanation
Indices: 7879776--7880177 Score: 460
Period size: 209 Copynumber: 1.9 Consensus size: 210
7879766 TGTCATGTGT
* * * *
7879776 CAACTTTCTATGAAGCACTCATAAAAGGCATTTATGTAATTATTGTATAAGAGGCATTATGATAA
1 CAACTTCCTATAAAGCACTCATAAAAGACATTTATGTAATTATAGTATAAGAGGCATTATGATAA
** * * *
7879841 TATTTGTCAATTATGGTAGAGGGGTATTTTTGTAAATATGATATGAGGGTTATTATAGTAATTTT
66 TATTTGTCAATTATGGTAGAGGGACATTTTTGTAAATATGATATGAGGATTACTAAAGTAATTTT
** * * *
7879906 GGTCAAATATGGTAGAAAGGGTATTTTTATACTTATTG-TAATAA-GGCATTATAGTAATTTTGA
131 AATCAAATATGATAGAAAGGGTATTTTCATAATTA-TGATAA-AAGGGCATTATAGTAATTTTGA
7879969 AATAAAATATCACATGG
194 AATAAAATATCACATGG
* *
7879986 CAACTTCCTATAAAGCACTTAT-AAAGACATTTATGTAATTATAGTATAATG-GGTATTAT-AGT
1 CAACTTCCTATAAAGCACTCATAAAAGACATTTATGTAATTATAGTATAA-GAGGCATTATGA-T
* * * * *
7880048 AAT-TTTGATCAATTATGGTGGAGTGACATTTTTGTGAGTATGGTATGA-GATATACTAAAGTAA
64 AATATTTG-TCAATTATGGTAGAGGGACATTTTTGTAAATATGATATGAGGAT-TACTAAAGTAA
* * * *
7880111 TTTTAATCAATTTTGATA-AGAGGGGTATTTTCATAATTATGATAAAAGGGTATTATAGTAATTT
127 TTTTAATCAAATATGATAGA-AAGGGTATTTTCATAATTATGATAAAAGGGCATTATAGTAATTT
7880175 TGA
191 TGA
7880178 CAATTATAAT
Statistics
Matches: 160, Mismatches: 25, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
208 12 0.08
209 128 0.80
210 20 0.12
ACGTcount: A:0.36, C:0.06, G:0.19, T:0.39
Consensus pattern (210 bp):
CAACTTCCTATAAAGCACTCATAAAAGACATTTATGTAATTATAGTATAAGAGGCATTATGATAA
TATTTGTCAATTATGGTAGAGGGACATTTTTGTAAATATGATATGAGGATTACTAAAGTAATTTT
AATCAAATATGATAGAAAGGGTATTTTCATAATTATGATAAAAGGGCATTATAGTAATTTTGAAA
TAAAATATCACATGG
Found at i:7880153 original size:26 final size:26
Alignment explanation
Indices: 7880110--7880164 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
7880100 TACTAAAGTA
* *
7880110 ATTTTAATCAATTTTGATAAGAGGGGT
1 ATTTTAATCAATTATGATAA-AAGGGT
*
7880137 ATTTTCAT-AATTATGATAAAAGGGT
1 ATTTTAATCAATTATGATAAAAGGGT
7880162 ATT
1 ATT
7880165 ATAGTAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 8 0.32
26 10 0.40
27 7 0.28
ACGTcount: A:0.36, C:0.04, G:0.18, T:0.42
Consensus pattern (26 bp):
ATTTTAATCAATTATGATAAAAGGGT
Found at i:7880348 original size:61 final size:61
Alignment explanation
Indices: 7880131--7880400 Score: 195
Period size: 61 Copynumber: 4.5 Consensus size: 61
7880121 TTTTGATAAG
* * * * * *
7880131 AGGGGTATTTTCATAATTATGATAAAAGGGTATTATAGTAATTTTGA-CAATTATAATAGA
1 AGGGATATTTTTATAATTATGATATAAGGGCATTATAATAATTTTGATCAATTATAAGAGA
* * ** * * *
7880191 AGACG-CATTTCCATAATTATGAT-TAAGATGGCATTATAATAATTTTG-GCTAATCATGAAAAG
1 AG-GGATATTTTTATAATTATGATATAAG--GGCATTATAATAATTTTGATC-AATTAT-AAGAG
7880253 -
61 A
* * * *
7880253 AGGGATATTTTTTTAATTAT-AGTAGAATGACATTATAATAATTTTGATCAATTATAAGAGA
1 AGGGATATTTTTATAATTATGA-TATAAGGGCATTATAATAATTTTGATCAATTATAAGAGA
* * *
7880314 AGGGATATTTTTGTAATTATGATATAAGGGCATTATAGTAA-----AT-AATTATAAGATA
1 AGGGATATTTTTATAATTATGATATAAGGGCATTATAATAATTTTGATCAATTATAAGAGA
* * *
7880369 AAGAATATTTTTATAATTATGATATGAGGGCA
1 AGGGATATTTTTATAATTATGATATAAGGGCA
7880401 AATAGTCAAT
Statistics
Matches: 169, Mismatches: 29, Indels: 29
0.74 0.13 0.13
Matches are distributed among these distances:
55 39 0.23
56 2 0.01
59 3 0.02
60 22 0.13
61 76 0.45
62 21 0.12
63 6 0.04
ACGTcount: A:0.40, C:0.05, G:0.17, T:0.38
Consensus pattern (61 bp):
AGGGATATTTTTATAATTATGATATAAGGGCATTATAATAATTTTGATCAATTATAAGAGA
Found at i:7880502 original size:153 final size:154
Alignment explanation
Indices: 7880325--7880601 Score: 353
Period size: 153 Copynumber: 1.8 Consensus size: 154
7880315 GGGATATTTT
* * *
7880325 TGTAATTATGATATAAGGGCATTATAGTAAATAATTATAAGATAAAGA-ATATTTTTATAATTAT
1 TGTAATTATGATATAAGGACATTATAATAAATAATTATAAGA-AAAGAGATATTTTCATAATTAT
* * * * *
7880389 GATATGAGGGCA-AATAGTCAATTTTGTCT-TATATCAATTTCCTATCAAATAATAGAAATATTA
65 GATATGAAGGCATAAGAGTCAA-TTTGGCTACATATAAATTTCCTATCAAATAATAGAAATATTA
7880452 ATTTGGTAATTTTTTAGGGGTGTTTC
129 ATTTGGTAATTTTTTAGGGGTGTTTC
* * * * *
7880478 TGTAATTGTGATATGAGGATATTATAATAAATAATTATAGGAAAAGAGATATTTTCGTAATTATG
1 TGTAATTATGATATAAGGACATTATAATAAATAATTATAAGAAAAGAGATATTTTCATAATTATG
* * * * *
7880543 GTATGAAGGTATAAGAGTCAATTTGGCTACATGTAAATTTCGTATCAAATAATGGAAAT
66 ATATGAAGGCATAAGAGTCAATTTGGCTACATATAAATTTCCTATCAAATAATAGAAAT
7880602 GGTATTTAGA
Statistics
Matches: 103, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
152 5 0.05
153 65 0.63
154 33 0.32
ACGTcount: A:0.39, C:0.05, G:0.17, T:0.39
Consensus pattern (154 bp):
TGTAATTATGATATAAGGACATTATAATAAATAATTATAAGAAAAGAGATATTTTCATAATTATG
ATATGAAGGCATAAGAGTCAATTTGGCTACATATAAATTTCCTATCAAATAATAGAAATATTAAT
TTGGTAATTTTTTAGGGGTGTTTC
Found at i:7880718 original size:129 final size:130
Alignment explanation
Indices: 7880495--7881008 Score: 383
Period size: 129 Copynumber: 3.9 Consensus size: 130
7880485 GTGATATGAG
* ** * * *
7880495 GATATTATAATAAATAATTATAGGAAAAGAGATATTTTCGTAATTATGGTATGAAGGTATAAGAG
1 GATATTATAATAAATAATTATA-GAGAAGAGATATTTTCGTAATTATGGTAAAAAAGCATAATAG
* * * * *
7880560 TCAATTTGGCTACA-TGTAAATTTCGTATCAAATAATGGAAATGGTATTTAGATAATTTGCTAGG
65 TCAATTT-GAT-CATTGTTAATTTCTTATCAAATAATGGAAATGATATTTAGATAATTTGCTAAG
7880624 AAA
128 AAA
*
7880627 GATATTATACTAAATAA-TA-AGAGAAGAGATATTTTCGTAATTATGGTAAAAAAGCATAATAGT
1 GATATTATAATAAATAATTATAGAGAAGAGATATTTTCGTAATTATGGTAAAAAAGCATAATAGT
** * * * * **
7880690 CAATTTGATCATGTGTTAATTTCTTATCAAATGTTAGAAATGATATTTTGGTAATTTTCTAAGTG
66 CAATTTGATCAT-TGTTAATTTCTTATCAAATAATGGAAATGATATTTAGATAATTTGCTAAGAA
7880755 A
130 A
* * * * * * *
7880756 GGTATTACAATAAATAATTATA-AGAAAATGAGTATTTTCATAATTATGATATGATAA-CATAAT
1 GATATTATAATAAATAATTATAGAGAAGA-GA-TATTTTCGTAATTATGGTA-AAAAAGCATAAT
* * * * * *
7880819 AATCAATTTGGTCACTTGTTAATTTCTTATTATATAATGGAAATAAAATTTTAG-TAATTT-CT-
63 AGTCAATTTGATCA-TTGTTAATTTCTTATCAAATAATGGAAATGATA-TTTAGATAATTTGCTA
*
7880881 -TAAA
126 AGAAA
* * *
7880885 GA-ATTATTTAGTAAATAATTATA-AGAAAATAAGTATTTTCGTAATTATGGTATAAGAAA--AT
1 GATATTA--TAATAAATAATTATAGAGAAGA-GA-TATTTTCGTAATTATGGTA-AA-AAAGCAT
* * * * *
7880946 AATAGTCTATTTG-GCTATATGTCAATGTCTTATCATATAATGGAAATGATATTCTAG-TAATTT
60 AATAGTCAATTTGATC-AT-TGTTAATTTCTTATCAAATAATGGAAATGATATT-TAGATAATTT
7881009 TATAAAAGAT
Statistics
Matches: 310, Mismatches: 57, Indels: 32
0.78 0.14 0.08
Matches are distributed among these distances:
127 2 0.01
128 6 0.02
129 104 0.34
130 99 0.32
131 9 0.03
132 82 0.26
133 8 0.03
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.39
Consensus pattern (130 bp):
GATATTATAATAAATAATTATAGAGAAGAGATATTTTCGTAATTATGGTAAAAAAGCATAATAGT
CAATTTGATCATTGTTAATTTCTTATCAAATAATGGAAATGATATTTAGATAATTTGCTAAGAAA
Found at i:7880958 original size:130 final size:131
Alignment explanation
Indices: 7880505--7881559 Score: 631
Period size: 130 Copynumber: 8.1 Consensus size: 131
7880495 GATATTATAA
* * ** *
7880505 TAAATAATTATAGGAAAA-GAGATATTTTCGTAATTATGGTATGA-AGGTATAAGAGTCAATTTG
1 TAAATAATTATAAGAAAATAAG-TATTTTCGTAATTATGGTATGAGA-AAATAATAGTCAATTTG
* * * *** **
7880568 G-CTACATGTAAATTTCGTATCAAATAATGGAAATGGTA-TTTAGATAATTTGCTAGGAA-AGA-
64 GTC-ACATGTCAATTTCTTATCATATAATGGAAATAAAATTTTAG-TAATTT--TATAAAGAGAT
*
7880629 TATTATAC
125 TATT-TAG
* * *
7880637 TAAAT-A--ATAAGAGAA-GAGATATTTTCGTAATTATGGTA--AAAAAGCATAATAGTCAATTT
1 TAAATAATTATAAGAAAATAAG-TATTTTCGTAATTATGGTATGAGAAA--ATAATAGTCAATTT
* ** * * ** * * * * * * *
7880696 GATCATGTGTTAATTTCTTATCAAATGTTAGAAATGATATTTTGGTAATTTTCT-AAGTGAGGTA
63 GGTCACATGTCAATTTCTTATCATATAATGGAAATAAAATTTTAGTAATTTTATAAAGAGA-TTA
* *
7880760 TTACAA
127 TT-TAG
* * * * * *
7880766 TAAATAATTATAAGAAAATGAGTATTTTCATAATTATGATATGATAACATAATAATCAATTTGGT
1 TAAATAATTATAAGAAAATAAGTATTTTCGTAATTATGGTATGAGAAAATAATAGTCAATTTGGT
* * *
7880831 CACTTGTTAATTTCTTATTATATAATGGAAATAAAATTTTAGTAATTTCT-TAAAGA-ATTATTT
66 CACATGTCAATTTCTTATCATATAATGGAAATAAAATTTTAGTAATTT-TATAAAGAGATTATTT
7880894 AG
130 AG
* *
7880896 TAAATAATTATAAGAAAATAAGTATTTTCGTAATTATGGTATAAGAAAATAATAGTCTATTTGG-
1 TAAATAATTATAAGAAAATAAGTATTTTCGTAATTATGGTATGAGAAAATAATAGTCAATTTGGT
* * * * *
7880960 CTATATGTCAATGTCTTATCATATAATGGAAATGATATTCTAGTAATTTTATAAA-AGATTATTT
66 C-ACATGTCAATTTCTTATCATATAATGGAAATAAAATTTTAGTAATTTTATAAAGAGATTATTT
7881024 AG
130 AG
* * * ** *
7881026 TAAATAATAACAA-AAAAT-A-TATTTTTGTAATTATAATAT-AGAGAATAATAGTCAATTTGG-
1 TAAATAATTATAAGAAAATAAGTATTTTCGTAATTATGGTATGAGAAAATAATAGTCAATTTGGT
* * * * ** * * * *
7881086 CTAAATGTCAATTTATTATCATAGAATGTAAA-AGGCATTTTGGTAGTTTTCT-AAGAGATTCTT
66 C-ACATGTCAATTTCTTATCATATAATGGAAATA-AAATTTTAGTAATTTTATAAAGAGATTATT
7881149 TAG
129 TAG
* * * ** *
7881152 TAAATAATTATAAAAAAAT-GGATATTTTCGTAATTATGGTATGATAGCATAATAGTTC-ATTTA
1 TAAATAATTATAAGAAAATAAG-TATTTTCGTAATTATGGTATGAGAAAATAATAG-TCAATTTG
* * * *
7881215 GCCACATGTCTATTTCTTGTCATATAAT--AAAAAAGAGATTTT-GATAATTTTATAAAGA-ATT
64 GTCACATGTCAATTTCTTATCATATAATGGAAATAA-A-ATTTTAG-TAATTTTATAAAGAGATT
7881276 ATTTAG
126 ATTTAG
* * * * *** ** *
7881282 TAAATAATTATAATATAATATA-TATTTTCATAATTATAGTATGAGCGCATAATAGTTTATTTGA
1 TAAATAATTATAAGAAAATA-AGTATTTTCGTAATTATGGTATGAGAAAATAATAGTCAATTTGG
* * * *
7881346 TCACATATCAATTTCTTGTCATATAAT-GAAA-AACATATTTTTGTAATTTCATAAA-AGATTAT
65 TCACATGTCAATTTCTTATCATATAATGGAAATAA-A-ATTTTAGTAATTTTATAAAGAGATTAT
7881408 TTAG
128 TTAG
* ** * ** * * * *
7881412 TAAAAAATTATAAGAAAA-AAGATATTTTTATAATTATGATATGAGAGCACAATAATAAATTCGG
1 TAAATAATTATAAGAAAATAAG-TATTTTCGTAATTATGGTATGAGAAAATAATAGTCAATTTGG
* * * * *
7881476 -CTACATGCCAATTTCTTATCATATAATAGAAA-AAACATTTTGGTAAATTTT-T-AGGGGATTA
65 TC-ACATGTCAATTTCTTATCATATAATGGAAATAAA-ATTTTAGT-AATTTTATAAAGAGATTA
*
7881537 TTTAA
127 TTTAG
*
7881542 TAAATGATTATAAGAAAA
1 TAAATAATTATAAGAAAA
7881560 GGGGAATTTT
Statistics
Matches: 743, Mismatches: 136, Indels: 90
0.77 0.14 0.09
Matches are distributed among these distances:
125 2 0.00
126 81 0.11
127 26 0.03
128 6 0.01
129 120 0.16
130 386 0.52
131 27 0.04
132 85 0.11
133 7 0.01
134 3 0.00
ACGTcount: A:0.42, C:0.06, G:0.13, T:0.39
Consensus pattern (131 bp):
TAAATAATTATAAGAAAATAAGTATTTTCGTAATTATGGTATGAGAAAATAATAGTCAATTTGGT
CACATGTCAATTTCTTATCATATAATGGAAATAAAATTTTAGTAATTTTATAAAGAGATTATTTA
G
Found at i:7881273 original size:386 final size:384
Alignment explanation
Indices: 7880505--7881526 Score: 978
Period size: 386 Copynumber: 2.6 Consensus size: 384
7880495 GATATTATAA
* * * * *
7880505 TAAATAATTATAGGAAAA-GAGATATTTTCGTAATTATGGTATGAAGGTATAAGAGTCAATTTGG
1 TAAATAATTATAAGAAAATAAG-TATTTTCGTAATTATGGTAT-AAGGAATAATAGTCTATTTGG
* * * * **
7880569 CTACATGTAAATTTCGTATCAAATAATGGAAATGGTATTTAGATAATTTGCTAGGAAAGA-TATT
64 CTACATGTCAATTTCTTATCATATAATGGAAATGATATTTAG-TAATTT--TATAAAAGATTATT
* * * * * * *
7880633 ATACTAAATAATAAGAGAAGAGATATTTTCGTAATTATGGTAAAAAAGCATAATAGTCAATTT-G
126 -TAGTAAATAATAAGAAAAAAGATATTTTTGTAATTATGAT-ATAGAGCATAATAGTCAATTTGG
* ** * * *
7880697 ATCATGTGTTAATTTCTTATC--AAATGTTAGAAATGATATTTTGGTAATTTTCTAAGTGAGGTA
189 CT-AAATGTCAATTTCTTATCATAAATG-TA-AAA-GACATTTTGGTAATTTTCTAAGAGAGGTA
*
7880760 TTACAATAAATAATTATAAGAAAATGAGTATTTTCATAATTATGATATGATAACATAATAATCAA
250 TTACAATAAATAATTATAAAAAAATGAGTATTTTCATAATTATGATATGATAACATAATAATCAA
* * * * *
7880825 TTTGGTCACTTGTTAATTTCTTATTATATAATGGAAATAAAATTTTAGTAATTTCTTAAAGAATT
315 TTTAGCCACATGTTAATTTCTTATCATATAAT-GAAAAAAAATTTTAGTAATTTCTTAAAGAATT
7880890 ATTTAG
379 ATTTAG
*
7880896 TAAATAATTATAAGAAAATAAGTATTTTCGTAATTATGGTATAAGAAAATAATAGTCTATTTGGC
1 TAAATAATTATAAGAAAATAAGTATTTTCGTAATTATGGTATAAG-GAATAATAGTCTATTTGGC
* *
7880961 TATATGTCAATGTCTTATCATATAATGGAAATGATATTCTAGTAATTTTATAAAAGATTATTTAG
65 TACATGTCAATTTCTTATCATATAATGGAAATGATATT-TAGTAATTTTATAAAAGATTATTTAG
* * * *
7881026 TAAATAATAACAAAAAATATATTTTTGTAATTATAATATAGAGAATAATAGTCAATTTGGCTAAA
129 TAAATAATAAGAAAAAAGATATTTTTGTAATTATGATATAGAGCATAATAGTCAATTTGGCTAAA
* * * * * * *
7881091 TGTCAATTTATTATCATAGAATGTAAAAGGCATTTTGGTAGTTTTCTAAGAGA-TTCTT-TAGTA
194 TGTCAATTTCTTATCATA-AATGTAAAAGACATTTTGGTAATTTTCTAAGAGAGGTATTACAATA
* * * *
7881154 AATAATTATAAAAAAATG-GATATTTTCGTAATTATGGTATGATAGCATAATAGTTC-ATTTAGC
258 AATAATTATAAAAAAATGAG-TATTTTCATAATTATGATATGATAACATAATA-ATCAATTTAGC
*
7881217 CACATGTCT-ATTTCTTGTCATATAAT-AAAAAAGAGATTTT-GATAATTT-TATAAAGAATTAT
321 CACATGT-TAATTTCTTATCATATAATGAAAAAA-A-ATTTTAG-TAATTTCT-TAAAGAATTAT
7881278 TTAG
381 TTAG
* * * * * * *
7881282 TAAATAATTATAATATAATATA-TATTTTCATAATTATAGTATGAGCGCATAATAGTTTATTT-G
1 TAAATAATTATAAGAAAATA-AGTATTTTCGTAATTATGGTATAAG-GAATAATAGTCTATTTGG
* * * * ** * *
7881345 ATCACATATCAATTTCTTGTCATATAATGAAAAACATATTTTTGTAATTTCATAAAAGATTATTT
64 CT-ACATGTCAATTTCTTATCATATAATGGAAATGATA-TTTAGTAATTTTATAAAAGATTATTT
* * * * * *
7881410 AGTAAAAAATTATAAGAAAAAAGATATTTTTATAATTATGATATGAGAGCACAATAATAAATTCG
127 AGT---AAATAATAAGAAAAAAGATATTTTTGTAATTATGATAT-AGAGCATAATAGTCAATTTG
* * *
7881475 GCTACATGCCAATTTCTTATCATATAATAG-AAAAAACATTTTGGTAAATTTT
188 GCTAAATGTCAATTTCTTATCATA-AAT-GTAAAAGACATTTTGGT-AATTTT
7881527 TAGGGGATTA
Statistics
Matches: 522, Mismatches: 85, Indels: 48
0.80 0.13 0.07
Matches are distributed among these distances:
384 5 0.01
385 6 0.01
386 205 0.39
387 9 0.02
388 53 0.10
389 77 0.15
390 62 0.12
391 100 0.19
392 5 0.01
ACGTcount: A:0.41, C:0.07, G:0.13, T:0.39
Consensus pattern (384 bp):
TAAATAATTATAAGAAAATAAGTATTTTCGTAATTATGGTATAAGGAATAATAGTCTATTTGGCT
ACATGTCAATTTCTTATCATATAATGGAAATGATATTTAGTAATTTTATAAAAGATTATTTAGTA
AATAATAAGAAAAAAGATATTTTTGTAATTATGATATAGAGCATAATAGTCAATTTGGCTAAATG
TCAATTTCTTATCATAAATGTAAAAGACATTTTGGTAATTTTCTAAGAGAGGTATTACAATAAAT
AATTATAAAAAAATGAGTATTTTCATAATTATGATATGATAACATAATAATCAATTTAGCCACAT
GTTAATTTCTTATCATATAATGAAAAAAAATTTTAGTAATTTCTTAAAGAATTATTTAG
Found at i:7890801 original size:27 final size:26
Alignment explanation
Indices: 7890770--7890878 Score: 80
Period size: 26 Copynumber: 4.2 Consensus size: 26
7890760 TTTAAGTTAT
* *
7890770 AGGTTAGGGTTTTGGTTTTGGAGTTTA
1 AGGTTAGGGTTTTAGTTTAGG-GTTTA
7890797 AGGTTAGGGTTTTAGTTTAGGGTTT-
1 AGGTTAGGGTTTTAGTTTAGGGTTTA
* * * *
7890822 AGAGTT-TGGTTTGAGGTTAGGATTTA
1 AG-GTTAGGGTTTTAGTTTAGGGTTTA
* * *
7890848 AGATTAAGG-TTTAGGTTTAAGGTTTA
1 AGGTTAGGGTTTTA-GTTTAGGGTTTA
*
7890874 TGGTT
1 AGGTT
7890879 TAGAATTTAG
Statistics
Matches: 64, Mismatches: 14, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
25 22 0.34
26 23 0.36
27 19 0.30
ACGTcount: A:0.20, C:0.00, G:0.34, T:0.46
Consensus pattern (26 bp):
AGGTTAGGGTTTTAGTTTAGGGTTTA
Found at i:7890816 original size:13 final size:13
Alignment explanation
Indices: 7890773--7890821 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
7890763 AAGTTATAGG
*
7890773 TTAGGGTTTTGGT
1 TTAGGGTTTTAGT
* * *
7890786 TTTGGAGTTTAAGG
1 TTAGG-GTTTTAGT
7890800 TTAGGGTTTTAGT
1 TTAGGGTTTTAGT
7890813 TTAGGGTTT
1 TTAGGGTTT
7890822 AGAGTTTGGT
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
13 19 0.68
14 9 0.32
ACGTcount: A:0.14, C:0.00, G:0.35, T:0.51
Consensus pattern (13 bp):
TTAGGGTTTTAGT
Found at i:7890859 original size:38 final size:37
Alignment explanation
Indices: 7890792--7890923 Score: 104
Period size: 38 Copynumber: 3.4 Consensus size: 37
7890782 TGGTTTTGGA
* * * *
7890792 GTTTAAGGTTAGGGTTTTAGTTTAGGGTTTAGAGTTTG
1 GTTTAAGGTTAGGATTTAAGATTAAGGTTTAG-GTTTG
*
7890830 GTTTGAGGTTAGGATTTAAGATTAAGGTTTAGGTTTAAG
1 GTTTAAGGTTAGGATTTAAGATTAAGGTTTAGGTTT--G
* * * *
7890869 GTTTATGGTTTAGAATTTAGAGTTTAA-TTTTAGGGTTTAG
1 GTTTAAGG-TTAGGATTTA-AGATTAAGGTTTA-GGTTT-G
7890909 AGTTTAAGGTTAGGA
1 -GTTTAAGGTTAGGA
7890924 GTTTCGTTTT
Statistics
Matches: 76, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
37 4 0.05
38 27 0.36
39 7 0.09
40 20 0.26
41 18 0.24
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.45
Consensus pattern (37 bp):
GTTTAAGGTTAGGATTTAAGATTAAGGTTTAGGTTTG
Found at i:7890867 original size:13 final size:13
Alignment explanation
Indices: 7890792--7890919 Score: 54
Period size: 13 Copynumber: 9.8 Consensus size: 13
7890782 TGGTTTTGGA
7890792 GTTTAAGG-TTAGG
1 GTTTAAGGTTTA-G
*
7890805 GTTTTA-GTTTAGG
1 GTTTAAGGTTTA-G
7890818 GTTT-AGAGTTT-G
1 GTTTAAG-GTTTAG
*
7890830 GTTTGAGG-TTAG
1 GTTTAAGGTTTAG
* *
7890842 GATTTAAGATTAAG
1 G-TTTAAGGTTTAG
7890856 GTTT-AGGTTTAAG
1 GTTTAAGGTTT-AG
*
7890869 GTTTATGGTTTAG
1 GTTTAAGGTTTAG
* *
7890882 AATTT-AGAGTTTAA
1 -GTTTAAG-GTTTAG
* *
7890896 TTTTAGGGTTTAG
1 GTTTAAGGTTTAG
7890909 AGTTTAAGGTT
1 -GTTTAAGGTT
7890920 AGGAGTTTCG
Statistics
Matches: 87, Mismatches: 15, Indels: 25
0.69 0.12 0.20
Matches are distributed among these distances:
11 2 0.02
12 14 0.16
13 41 0.47
14 30 0.34
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (13 bp):
GTTTAAGGTTTAG
Done.