Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14313602
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 50000 characters in sequence are not A, C, G, or T
File 37 of 74
Found at i:7890888 original size:27 final size:26
Alignment explanation
Indices: 7890857--7890919 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
7890847 AAGATTAAGG
*
7890857 TTTAGGTTTAAGGTTTATGGTTTAGAA
1 TTTAGGTTTAA-GTTTAGGGTTTAGAA
* *
7890884 TTTAGAGTTTAATTTTAGGGTTTAGAG
1 TTTAG-GTTTAAGTTTAGGGTTTAGAA
7890911 TTTAAGGTT
1 TTT-AGGTT
7890920 AGGAGTTTCG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
27 23 0.74
28 8 0.26
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.49
Consensus pattern (26 bp):
TTTAGGTTTAAGTTTAGGGTTTAGAA
Found at i:7890921 original size:20 final size:20
Alignment explanation
Indices: 7890790--7890927 Score: 90
Period size: 20 Copynumber: 7.0 Consensus size: 20
7890780 TTTGGTTTTG
7890790 GAGTTTAAGGTTAGGGTTT-
1 GAGTTTAAGGTTAGGGTTTA
* * *
7890809 TAGTTTAGGGTTTAGAGTTT-
1 GAGTTTAAGG-TTAGGGTTTA
* *
7890829 G-GTTTGAGGTTAGGATTTA
1 GAGTTTAAGGTTAGGGTTTA
*
7890848 -AGATTAAGGTTTA-GGTTTA
1 GAGTTTAAGG-TTAGGGTTTA
* **
7890867 -AGGTTTATGGTTTAGAATTTA
1 GA-GTTTAAGG-TTAGGGTTTA
**
7890888 GAGTTTAATTTTAGGGTTTA
1 GAGTTTAAGGTTAGGGTTTA
7890908 GAGTTTAAGGTTAGGAGTTT
1 GAGTTTAAGGTTAGG-GTTT
7890928 CGTTTTGGGT
Statistics
Matches: 89, Mismatches: 22, Indels: 14
0.71 0.18 0.11
Matches are distributed among these distances:
18 7 0.08
19 26 0.29
20 42 0.47
21 13 0.15
22 1 0.01
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.45
Consensus pattern (20 bp):
GAGTTTAAGGTTAGGGTTTA
Found at i:7892092 original size:11 final size:11
Alignment explanation
Indices: 7892057--7892093 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
7892047 GCCTTTTTAA
7892057 TTTTT-TTTCT
1 TTTTTCTTTCT
7892067 ATTTTTCTTTCT
1 -TTTTTCTTTCT
7892079 TTTTTCTTT-T
1 TTTTTCTTTCT
7892089 TTTTT
1 TTTTT
7892094 GGCCAATTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 6 0.24
11 14 0.56
12 5 0.20
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.86
Consensus pattern (11 bp):
TTTTTCTTTCT
Found at i:7892730 original size:145 final size:143
Alignment explanation
Indices: 7892495--7892759 Score: 388
Period size: 145 Copynumber: 1.8 Consensus size: 143
7892485 ATTGGAAATG
* * *
7892495 TCAAATTATAAAAATATCCTTTAAGGGTATTTATTAATTTTACACCTTTCGAGGTGCGATCAAAG
1 TCAAATTATAAAAATATCCTTTAAGAGTATTTAGTAATTTTACAACTTTCGAGGTGCGATCAAAG
7892560 TTTTTAATACACAAAAAATCATCAAATAATATAAAAATAATAATTTGAAGCATTTTACAAAAAAT
66 TTTTTAATACACAAAAAATCATCAAATAATAT-AAAATAATAATTTGAAGCATTTTACAAAAAAT
7892625 TAACTTTGAAAAGA
130 TAACTTTGAAAAGA
** * * * *
7892639 TCAAATTATAAAAATATTTTTTAAGAGTATTTCAGTAATTTTATAATTTTCGATGTGTGATCAAT
1 TCAAATTATAAAAATATCCTTTAAGAGTATTT-AGTAATTTTACAACTTTCGAGGTGCGATCAA-
* * *
7892704 A-TTTTTAATGCACAAAAAATCATCAAATAATATAAAATAATGATTTGGAGCATTTT
64 AGTTTTTAATACACAAAAAATCATCAAATAATATAAAATAATAATTTGAAGCATTTT
7892760 GTAAAACATA
Statistics
Matches: 107, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
144 50 0.47
145 56 0.52
146 1 0.01
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.37
Consensus pattern (143 bp):
TCAAATTATAAAAATATCCTTTAAGAGTATTTAGTAATTTTACAACTTTCGAGGTGCGATCAAAG
TTTTTAATACACAAAAAATCATCAAATAATATAAAATAATAATTTGAAGCATTTTACAAAAAATT
AACTTTGAAAAGA
Found at i:7892778 original size:144 final size:145
Alignment explanation
Indices: 7892482--7892808 Score: 389
Period size: 144 Copynumber: 2.3 Consensus size: 145
7892472 ATGAAAAATC
* * * *
7892482 AATATTGGAAATG-TCAAATTATAAAAATATCCTTTAAGGGTATTTATTAATTTTACACCTTTCG
1 AATATT-GAAAAGATCAAATTATAAAAATATCCTTTAAGAGTATTTAGTAATTTTACAACTTTCG
7892546 AGGTGCGATCAAAGTTTTTAATACACAAAAAATCATCAAATAATATAAAAATAATAATTTGAAGC
65 AGGTGCGATCAAAGTTTTTAATACACAAAAAATCATCAAATAATATAAAAATAATAATTTGAAGC
7892611 ATTTTACAAAAAATTA
130 ATTTTACAAAAAATTA
* ** * *
7892627 ACT-TTGAAAAGATCAAATTATAAAAATATTTTTTAAGAGTATTTCAGTAATTTTATAATTTTCG
1 AATATTGAAAAGATCAAATTATAAAAATATCCTTTAAGAGTATTT-AGTAATTTTACAACTTTCG
* * * * *
7892691 ATGTGTGATCAATA-TTTTTAATGCACAAAAAATCATCAAATAATAT-AAAATAATGATTTGGAG
65 AGGTGCGATCAA-AGTTTTTAATACACAAAAAATCATCAAATAATATAAAAATAATAATTTGAAG
** *
7892754 CATTTTGTAAAACA-TA
129 CATTTTACAAAAAATTA
** *
7892770 AATATTGAAAA-AGTCAAATTACGAAAATAT-CTCTAAGAG
1 AATATTGAAAAGA-TCAAATTATAAAAATATCCTTTAAGAG
7892809 AAACATTTGG
Statistics
Matches: 155, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
143 17 0.11
144 79 0.51
145 58 0.37
146 1 0.01
ACGTcount: A:0.45, C:0.09, G:0.10, T:0.35
Consensus pattern (145 bp):
AATATTGAAAAGATCAAATTATAAAAATATCCTTTAAGAGTATTTAGTAATTTTACAACTTTCGA
GGTGCGATCAAAGTTTTTAATACACAAAAAATCATCAAATAATATAAAAATAATAATTTGAAGCA
TTTTACAAAAAATTA
Found at i:7893026 original size:27 final size:27
Alignment explanation
Indices: 7892996--7893052 Score: 64
Period size: 28 Copynumber: 2.1 Consensus size: 27
7892986 TTTGTTTTCT
7892996 AAAA-TATGTATTTAATAAAT-AAAAATA
1 AAAATTAT-TATTTAA-AAATAAAAAATA
*
7893023 AAAATTATTTTTTAAAAATACAAAAATA
1 AAAATTATTATTTAAAAATA-AAAAATA
7893051 AA
1 AA
7893053 GAAATAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
26 4 0.15
27 10 0.38
28 12 0.46
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (27 bp):
AAAATTATTATTTAAAAATAAAAAATA
Found at i:7904552 original size:29 final size:29
Alignment explanation
Indices: 7904520--7904586 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
7904510 ATGATTCTTT
7904520 AACTATAATAAA-ATATAATGTGATATCTA
1 AACTATAA-AAATATATAATGTGATATCTA
* * * * *
7904549 AACTTTAAAAATTTCTAATGTGGTATCTG
1 AACTATAAAAATATATAATGTGATATCTA
7904578 AACTATAAA
1 AACTATAAA
7904587 TTTGTTAACT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
28 3 0.10
29 28 0.90
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.36
Consensus pattern (29 bp):
AACTATAAAAATATATAATGTGATATCTA
Found at i:7904793 original size:2 final size:2
Alignment explanation
Indices: 7904786--7904819 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7904776 CCCTATGATC
7904786 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7904820 TGTAGCAAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7912511 original size:6 final size:7
Alignment explanation
Indices: 7912494--7912519 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
7912484 CATAAATTGT
7912494 TTTTTTG
1 TTTTTTG
7912501 TTTTTTG
1 TTTTTTG
7912508 TTTTTTG
1 TTTTTTG
7912515 TTTTT
1 TTTTT
7912520 AAATTTAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (7 bp):
TTTTTTG
Found at i:7918330 original size:31 final size:31
Alignment explanation
Indices: 7918295--7918353 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
7918285 TAAATTTGTG
*
7918295 CTGAAATGATTTATAACAAAGTGAATATGTA
1 CTGAAATGATTTACAACAAAGTGAATATGTA
* * *
7918326 CTGAAGTGATTTACACCAAAGTTAATAT
1 CTGAAATGATTTACAACAAAGTGAATAT
7918354 ATGCTGAGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.32
Consensus pattern (31 bp):
CTGAAATGATTTACAACAAAGTGAATATGTA
Found at i:7920323 original size:29 final size:30
Alignment explanation
Indices: 7920283--7920348 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
7920273 AACTAATTAA
7920283 TTTTAT-TT-AAATAAAT-TTT-TATATTT
1 TTTTATATTCAAATAAATCTTTATATATTT
7920309 TTATTATATTCAAATAAATCTTTATATATTT
1 TT-TTATATTCAAATAAATCTTTATATATTT
7920340 TTTTATATT
1 TTTTATATT
7920349 TATATAAGCT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
26 2 0.06
27 4 0.11
28 2 0.06
29 8 0.23
30 10 0.29
31 9 0.26
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (30 bp):
TTTTATATTCAAATAAATCTTTATATATTT
Found at i:7920494 original size:30 final size:29
Alignment explanation
Indices: 7920405--7920496 Score: 78
Period size: 30 Copynumber: 3.1 Consensus size: 29
7920395 TTAATTTAGG
** * *
7920405 TACAAATTAAAAATTTATGATTTATTTGAA
1 TACAAATTAAAAA-TTAACACTTATTTGGA
* *
7920435 TACAAATT-AAAGTGTAACACCTTAATTGGA
1 TACAAATTAAAAAT-TAACA-CTTATTTGGA
*
7920465 TGCAAATTAAAAATTAAACACTTATTTGGA
1 TACAAATTAAAAATT-AACACTTATTTGGA
7920495 TA
1 TA
7920497 TAATAAAAAT
Statistics
Matches: 48, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
28 1 0.02
29 6 0.12
30 33 0.69
31 8 0.17
ACGTcount: A:0.46, C:0.09, G:0.10, T:0.36
Consensus pattern (29 bp):
TACAAATTAAAAATTAACACTTATTTGGA
Found at i:7922506 original size:21 final size:22
Alignment explanation
Indices: 7922466--7922540 Score: 75
Period size: 21 Copynumber: 3.5 Consensus size: 22
7922456 ATCATGCAAA
*
7922466 ATAATATTATGCAAATAATAAT
1 ATAATATCATGCAAATAATAAT
*
7922488 ATAATATCATGC-CATAATAAT
1 ATAATATCATGCAAATAATAAT
* * *
7922509 ATGATATCATGTAATTAAT-AT
1 ATAATATCATGCAAATAATAAT
7922530 A-AACTATCATG
1 ATAA-TATCATG
7922541 TAATTAAGAT
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
20 1 0.02
21 28 0.64
22 15 0.34
ACGTcount: A:0.48, C:0.09, G:0.07, T:0.36
Consensus pattern (22 bp):
ATAATATCATGCAAATAATAAT
Found at i:7922541 original size:21 final size:21
Alignment explanation
Indices: 7922512--7922559 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
7922502 TAATAATATG
*
7922512 ATATCATGTAATTAATATAAA
1 ATATCATGTAATTAAGATAAA
*
7922533 CTATCATGTAATTAAGATAAA
1 ATATCATGTAATTAAGATAAA
7922554 ATATCA
1 ATATCA
7922560 CGCAAAAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.50, C:0.08, G:0.06, T:0.35
Consensus pattern (21 bp):
ATATCATGTAATTAAGATAAA
Found at i:7922623 original size:24 final size:25
Alignment explanation
Indices: 7922584--7922638 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
7922574 ACACAAACAA
* *
7922584 AATCATGCAAACAAATATATTA-AT
1 AATCATGCAAACAAATAAAATATAT
**
7922608 AATCATGCAATTAAATAAAATATAT
1 AATCATGCAAACAAATAAAATATAT
7922633 AATCAT
1 AATCAT
7922639 ATCTGGCAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 18 0.69
25 8 0.31
ACGTcount: A:0.55, C:0.11, G:0.04, T:0.31
Consensus pattern (25 bp):
AATCATGCAAACAAATAAAATATAT
Found at i:7922733 original size:13 final size:13
Alignment explanation
Indices: 7922717--7922741 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7922707 AGAGAAACAA
7922717 AAAAAAATAAAAT
1 AAAAAAATAAAAT
7922730 AAAAAAATAAAA
1 AAAAAAATAAAA
7922742 AATAAAGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAAAATAAAAT
Found at i:7922761 original size:20 final size:18
Alignment explanation
Indices: 7922698--7922755 Score: 71
Period size: 19 Copynumber: 3.1 Consensus size: 18
7922688 AAAACAAAGT
* *
7922698 AAAAAAAATAGAGAAACA
1 AAAAAAAATAAAGAAAAA
*
7922716 AAAAAAAATAAAATAAAAA
1 AAAAAAAAT-AAAGAAAAA
7922735 AATAAAAAATAAAGAAAAA
1 AA-AAAAAATAAAGAAAAA
7922754 AA
1 AA
7922756 GGAAAACTAG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
18 9 0.26
19 18 0.53
20 7 0.21
ACGTcount: A:0.84, C:0.02, G:0.05, T:0.09
Consensus pattern (18 bp):
AAAAAAAATAAAGAAAAA
Found at i:7923873 original size:3 final size:3
Alignment explanation
Indices: 7923865--7923930 Score: 123
Period size: 3 Copynumber: 22.0 Consensus size: 3
7923855 AATGAATAAC
7923865 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
7923913 ATA ATA ATA ATA GTA ATA
1 ATA ATA ATA ATA ATA ATA
7923931 TCATCATCAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7924529 original size:14 final size:14
Alignment explanation
Indices: 7924489--7924528 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
7924479 AATGTCTAGG
*
7924489 TAAAAAAATTATTC
1 TAAAAAAATTTTTC
7924503 TAAAAAAATTTTTC
1 TAAAAAAATTTTTC
*
7924517 T-AGAAAATTTTT
1 TAAAAAAATTTTT
7924529 TTGTTGGTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 10 0.42
14 14 0.58
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (14 bp):
TAAAAAAATTTTTC
Found at i:7925423 original size:40 final size:40
Alignment explanation
Indices: 7925341--7925568 Score: 149
Period size: 40 Copynumber: 5.8 Consensus size: 40
7925331 TTGTCCAACT
* *
7925341 AGAGGC-ACTGAAACTTTAGAATTTATAAGGA-TCCTT-TAACC
1 AGAGGCTA-TGAAACTTTA-AATTTA-AAAGACT-CTTCTGACC
7925382 AGAGGCTATGAAACTTTAAATTTAAAAGACTCTTCTGACC
1 AGAGGCTATGAAACTTTAAATTTAAAAGACTCTTCTGACC
* * * *
7925422 AGAGGC-ATTGAAACTTTAAACTGAAAA-AGCTTTTCTTACC
1 AGAGGCTA-TGAAACTTTAAATTTAAAAGA-CTCTTCTGACC
* * * * *
7925462 AGAGGCAATGAAACTTTAAA--T----GGCTCCTCTGGCT
1 AGAGGCTATGAAACTTTAAATTTAAAAGACTCTTCTGACC
* * *
7925496 AGAGG-TAATGAAATTTTAAAATGTAAAAGGCT-TATCTGACC
1 AGAGGCT-ATGAAACTTT-AAATTTAAAAGACTCT-TCTGACC
*
7925537 AGAAGCTATGAAACTTTAAATTTAAAAGACTC
1 AGAGGCTATGAAACTTTAAATTTAAAAGACTC
7925569 ATTTGACTGG
Statistics
Matches: 147, Mismatches: 22, Indels: 36
0.72 0.11 0.18
Matches are distributed among these distances:
34 20 0.14
35 3 0.02
37 1 0.01
39 9 0.06
40 73 0.50
41 39 0.27
42 2 0.01
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (40 bp):
AGAGGCTATGAAACTTTAAATTTAAAAGACTCTTCTGACC
Found at i:7925782 original size:36 final size:36
Alignment explanation
Indices: 7925742--7925811 Score: 97
Period size: 36 Copynumber: 1.9 Consensus size: 36
7925732 AAATTAAAGG
* *
7925742 AAGCTCTTCTGACCAGAGGCT-ATGACACTTTAAAAA
1 AAGCTCCTCTGACCAGAGG-TAATGAAACTTTAAAAA
*
7925778 AAGCTCCTCTGACTAGAGGTAATGAAACTTTAAA
1 AAGCTCCTCTGACCAGAGGTAATGAAACTTTAAA
7925812 TATCTTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
35 1 0.03
36 29 0.97
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (36 bp):
AAGCTCCTCTGACCAGAGGTAATGAAACTTTAAAAA
Found at i:7929352 original size:20 final size:20
Alignment explanation
Indices: 7929327--7929375 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
7929317 ATAGGATTTG
* *
7929327 AAAAGGGATCGATCACCTGA
1 AAAAGGGATCAATCACCTAA
7929347 AAAAGGGATCAATCACCTAA
1 AAAAGGGATCAATCACCTAA
7929367 AAAAGGGAT
1 AAAAGGGAT
7929376 TGAATGGTAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.47, C:0.16, G:0.22, T:0.14
Consensus pattern (20 bp):
AAAAGGGATCAATCACCTAA
Found at i:7930003 original size:17 final size:16
Alignment explanation
Indices: 7929973--7930007 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
7929963 TCCCTATCTC
7929973 TTTATTTTGATTATAG
1 TTTATTTTGATTATAG
*
7929989 TTTATATTTGCTTATAG
1 TTTAT-TTTGATTATAG
7930006 TT
1 TT
7930008 CATCAATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.23, C:0.03, G:0.11, T:0.63
Consensus pattern (16 bp):
TTTATTTTGATTATAG
Found at i:7930839 original size:21 final size:20
Alignment explanation
Indices: 7930797--7930839 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 20
7930787 TGAATTTTTA
*
7930797 GAAAAAGAAAATTTTGATTT
1 GAAAAAGAAAATTTTGAATT
7930817 GAAAAA-AAAATTTGATGAATT
1 GAAAAAGAAAATTT--TGAATT
7930838 GA
1 GA
7930840 TGAATGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 7 0.35
20 6 0.30
21 7 0.35
ACGTcount: A:0.53, C:0.00, G:0.16, T:0.30
Consensus pattern (20 bp):
GAAAAAGAAAATTTTGAATT
Found at i:7934008 original size:3 final size:3
Alignment explanation
Indices: 7933985--7934113 Score: 90
Period size: 3 Copynumber: 43.3 Consensus size: 3
7933975 CCCACATTTT
* **
7933985 TTA TT- TTA TTT TTA TTTA TTA TTA TTA TTA GCA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
7934029 TTC TT- TT- TTCG TTA TTA TTTA TTT TTA TTA TTTA TTA ATA TTA TCA
1 TTA TTA TTA TT-A TTA TTA -TTA TTA TTA TTA -TTA TTA TTA TTA TTA
*
7934075 TTA TTTA TT- TTA TTA TTA TTA TTA TTA TTT TTA TT- TTA T
1 TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
7934114 CTTTTCTTTT
Statistics
Matches: 101, Mismatches: 15, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
2 12 0.12
3 75 0.74
4 14 0.14
ACGTcount: A:0.26, C:0.03, G:0.02, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:7934053 original size:16 final size:14
Alignment explanation
Indices: 7934040--7934111 Score: 53
Period size: 13 Copynumber: 5.0 Consensus size: 14
7934030 TCTTTTTTCG
7934040 TTATTATTTA-TTT
1 TTATTATTTATTTT
7934053 TTATTATTTATTAATAT
1 TTATTATTTATT--T-T
7934070 TATCATTATTTATTTT
1 T-T-ATTATTTATTTT
*
7934086 ATTATTA-TTA-TTA
1 -TTATTATTTATTTT
7934099 TTATT-TTTATTTT
1 TTATTATTTATTTT
7934112 ATCTTTTCTT
Statistics
Matches: 48, Mismatches: 2, Indels: 18
0.71 0.03 0.26
Matches are distributed among these distances:
12 8 0.17
13 14 0.29
14 4 0.08
15 4 0.08
16 3 0.06
17 4 0.08
18 1 0.02
19 10 0.21
ACGTcount: A:0.28, C:0.01, G:0.00, T:0.71
Consensus pattern (14 bp):
TTATTATTTATTTT
Found at i:7934112 original size:57 final size:53
Alignment explanation
Indices: 7933980--7934113 Score: 139
Period size: 53 Copynumber: 2.5 Consensus size: 53
7933970 ATAGACCCAC
* *
7933980 ATTTTTTATT-TTATTTTTA-TTTATTATTATTATTAGCATTATTATTATTTT
1 ATTTTTTATTATTATTTTTATTTTATTATTATTAATAGCATCATTATTATTTT
* * * **
7934031 CTTTTTTCGTTATTATTTAT-TTTTATTATTTATTAATATTATCATTATTTATTTT
1 ATTTTTT-ATTATTATTTTTATTTTATTA-TTATTAATAGCATCATTA-TTATTTT
7934086 ATTATTATTATTATTATTTTTATTTTAT
1 ATT-TT-TTATTATTATTTTTATTTTAT
7934114 CTTTTCTTTT
Statistics
Matches: 65, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
51 6 0.09
52 2 0.03
53 14 0.22
54 14 0.22
55 9 0.14
56 12 0.18
57 8 0.12
ACGTcount: A:0.25, C:0.03, G:0.01, T:0.70
Consensus pattern (53 bp):
ATTTTTTATTATTATTTTTATTTTATTATTATTAATAGCATCATTATTATTTT
Found at i:7934602 original size:21 final size:22
Alignment explanation
Indices: 7934578--7934620 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
7934568 AGTTTTGTTT
7934578 AGAGAGAAAGAG-G-AGAAAAAA
1 AGAGA-AAAGAGAGAAGAAAAAA
7934599 AGAGAAAAGAGAGAAGAAAAAA
1 AGAGAAAAGAGAGAAGAAAAAA
7934621 GACGTATCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 6 0.30
21 6 0.30
22 8 0.40
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (22 bp):
AGAGAAAAGAGAGAAGAAAAAA
Found at i:7934604 original size:19 final size:20
Alignment explanation
Indices: 7934578--7934619 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
7934568 AGTTTTGTTT
7934578 AGAGAGAAAGAGGAGAA-AAAA
1 AGAGA-AAAGA-GAGAAGAAAA
7934599 AGAGAAAAGAGAGAAGAAAA
1 AGAGAAAAGAGAGAAGAAAA
7934619 A
1 A
7934620 AGACGTATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 5 0.25
20 10 0.50
21 5 0.25
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (20 bp):
AGAGAAAAGAGAGAAGAAAA
Found at i:7941612 original size:13 final size:12
Alignment explanation
Indices: 7941579--7941611 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
7941569 AATAATGGAT
*
7941579 GAAAAAAATGAA
1 GAAAAAAAAGAA
7941591 GAAAAAAAAGAA
1 GAAAAAAAAGAA
7941603 GAAAAAAAA
1 GAAAAAAAA
7941612 AAAAGCATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (12 bp):
GAAAAAAAAGAA
Found at i:7941624 original size:16 final size:15
Alignment explanation
Indices: 7941580--7941686 Score: 69
Period size: 16 Copynumber: 6.9 Consensus size: 15
7941570 ATAATGGATG
*
7941580 AAAAAA-ATGAAGAA
1 AAAAAAGATGAAAAA
*
7941594 AAAAAAGAAGAAAAAA
1 AAAAAAGATG-AAAAA
7941610 AAAAAAGCATGAAAAA
1 AAAAAAG-ATGAAAAA
**
7941626 TTGAAAAAA-AT-AAATG
1 ---AAAAAAGATGAAAAA
7941642 AAAAAA-ATGAAAAA
1 AAAAAAGATGAAAAA
* *
7941656 TAAAAAAAATAAAAAA
1 -AAAAAAGATGAAAAA
7941672 TAAAAAAGATGAAAA
1 -AAAAAAGATGAAAA
7941687 TGAGAGAAAA
Statistics
Matches: 74, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
13 8 0.11
14 9 0.12
15 8 0.11
16 39 0.53
17 4 0.05
19 6 0.08
ACGTcount: A:0.79, C:0.01, G:0.10, T:0.10
Consensus pattern (15 bp):
AAAAAAGATGAAAAA
Found at i:7941635 original size:22 final size:21
Alignment explanation
Indices: 7941577--7941678 Score: 79
Period size: 22 Copynumber: 4.9 Consensus size: 21
7941567 TCAATAATGG
7941577 ATGAAAAAAATGAAGAAAAAAA
1 ATGAAAAAAATGAA-AAAAAAA
**
7941599 A-GAAGAAAAA--AAAAAAAGC
1 ATGAA-AAAAATGAAAAAAAAA
*
7941618 ATG-AAAAATTGAAAAAAATAA
1 ATGAAAAAAATGAAAAAAA-AA
7941639 ATGAAAAAAATGAAAAATAAAA
1 ATGAAAAAAATGAAAAA-AAAA
**
7941661 AAAATAAAAAAT-AAAAAA
1 ATGA-AAAAAATGAAAAAA
7941679 GATGAAAATG
Statistics
Matches: 64, Mismatches: 8, Indels: 17
0.72 0.09 0.19
Matches are distributed among these distances:
18 4 0.06
19 7 0.11
20 10 0.16
21 7 0.11
22 27 0.42
23 9 0.14
ACGTcount: A:0.78, C:0.01, G:0.10, T:0.11
Consensus pattern (21 bp):
ATGAAAAAAATGAAAAAAAAA
Found at i:7943266 original size:89 final size:87
Alignment explanation
Indices: 7943117--7943385 Score: 284
Period size: 89 Copynumber: 3.1 Consensus size: 87
7943107 GTCAATGAGT
* *
7943117 AATTTATTTTTTTCAAAGTCGTGTTGCCTCTGTTTAGAGGAGCAATTTATTTTTTTCAAAGTCGT
1 AATTTATTTTTTCCAAAGTCGTGTTGCCTCTATTTAGAGGAGCAATTTATTTTTTTCAAAGTCGT
*
7943182 GATTGCCTTTGTTT-AAAGAAGC
66 GATTGCCTCTGTTTAAAAG-AGC
* ** *
7943204 AATTTATTTTTTCCAAAGTCAGTGGTTGCCTTTATTTAGATTAGTAATTTATTTTTTTCAAAGTC
1 AATTTATTTTTTCCAAAGTC-GT-GTTGCCTCTATTTAGAGGAGCAATTTATTTTTTTCAAAGTC
* *
7943269 GTGGTTGCCTCTGTTTAAAAGAGT
64 GTGATTGCCTCTGTTTAAAAGAGC
* * * *
7943293 AATTTA-TTTTTCCAAAAGTCG-GGTGCC-CTGTTTAGAGGAGTAATTTA---TTTTCAAAAGTT
1 AATTTATTTTTTCC-AAAGTCGTGTTGCCTCTATTTAGAGGAGCAATTTATTTTTTTC-AAAGTC
* * * *
7943352 GTG-GTGCCTCTGTTTAGAGGAGT
64 GTGATTGCCTCTGTTTAAAAGAGC
7943375 AATTTATTTTT
1 AATTTATTTTT
7943386 GAAATTATGG
Statistics
Matches: 158, Mismatches: 18, Indels: 16
0.82 0.09 0.08
Matches are distributed among these distances:
82 28 0.18
83 12 0.08
85 16 0.10
86 5 0.03
87 19 0.12
88 10 0.06
89 64 0.41
90 4 0.03
ACGTcount: A:0.25, C:0.12, G:0.19, T:0.45
Consensus pattern (87 bp):
AATTTATTTTTTCCAAAGTCGTGTTGCCTCTATTTAGAGGAGCAATTTATTTTTTTCAAAGTCGT
GATTGCCTCTGTTTAAAAGAGC
Found at i:7943336 original size:41 final size:43
Alignment explanation
Indices: 7943113--7943385 Score: 306
Period size: 44 Copynumber: 6.3 Consensus size: 43
7943103 GATTGTCAAT
*
7943113 GAGTAATTTATTTTTTTCAAAGTCGTGTTGCCTCTGTTTAGAG
1 GAGTAATTTATTTTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
* * * *
7943156 GAGCAATTTATTTTTTTCAAAGTCGTGATTGCCTTTGTTTAAAG
1 GAGTAATTTATTTTTTTCAAAGTCGTG-GTGCCTCTGTTTAGAG
* * * * * *
7943200 AAGCAATTTATTTTTTCCAAAGTCAGTGGTTGCCTTTATTTAGAT
1 GAGTAATTTATTTTTTTCAAAGTC-GTGG-TGCCTCTGTTTAGAG
* * *
7943245 TAGTAATTTATTTTTTTCAAAGTCGTGGTTGCCTCTGTTTAAAA
1 GAGTAATTTATTTTTTTCAAAGTCGTGG-TGCCTCTGTTTAGAG
*
7943289 GAGTAATTTA-TTTTTCCAAAAGTCG-GGTGCC-CTGTTTAGAG
1 GAGTAATTTATTTTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAG
*
7943330 GAGTAATTTA---TTTTCAAAAGTTGTGGTGCCTCTGTTTAGAG
1 GAGTAATTTATTTTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAG
7943371 GAGTAATTTATTTTT
1 GAGTAATTTATTTTT
7943386 GAAATTATGG
Statistics
Matches: 199, Mismatches: 22, Indels: 17
0.84 0.09 0.07
Matches are distributed among these distances:
39 11 0.06
40 6 0.03
41 38 0.19
42 4 0.02
43 34 0.17
44 70 0.35
45 36 0.18
ACGTcount: A:0.25, C:0.11, G:0.19, T:0.45
Consensus pattern (43 bp):
GAGTAATTTATTTTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
Found at i:7943397 original size:40 final size:40
Alignment explanation
Indices: 7943274--7943409 Score: 157
Period size: 41 Copynumber: 3.4 Consensus size: 40
7943264 AAGTCGTGGT
* * * **
7943274 TGCCTCTGTTTAAAAGAGTAATTTATTTTTCCAAAAGTCGGG
1 TGCCTCTGTTTAGAGGAGTAATTTATTTTT--AAAATTATGG
* *
7943316 TGCC-CTGTTTAGAGGAGTAATTTATTTTCAAAAGTTGTGG
1 TGCCTCTGTTTAGAGGAGTAATTTATTTTTAAAA-TTATGG
*
7943356 TGCCTCTGTTTAGAGGAGTAATTTATTTTTGAAATTATGG
1 TGCCTCTGTTTAGAGGAGTAATTTATTTTTAAAATTATGG
*
7943396 TGCCTCTGCTTAGA
1 TGCCTCTGTTTAGA
7943410 AAAGCTTTGT
Statistics
Matches: 82, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
39 4 0.05
40 25 0.30
41 49 0.60
42 4 0.05
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.40
Consensus pattern (40 bp):
TGCCTCTGTTTAGAGGAGTAATTTATTTTTAAAATTATGG
Found at i:7943445 original size:44 final size:43
Alignment explanation
Indices: 7943397--7943593 Score: 207
Period size: 44 Copynumber: 4.5 Consensus size: 43
7943387 AAATTATGGT
**
7943397 GCCTCTGCTTAGAAAAGCTTTGTTTATCTTTCCAAAGTCATTGA
1 GCCTCTGCTTAGAGGAGCTTTGTTTAT-TTTCCAAAGTCATTGA
* * * *
7943441 GCCTCTGTTTAGAGGAGCTTTATTTATTTT-TAAAGTCGTTGA
1 GCCTCTGCTTAGAGGAGCTTTGTTTATTTTCCAAAGTCATTGA
* * * * *
7943483 GCCTTTACTTAGAGGAGCCTTGTTTATTTGTTCGAAGTCATTGA
1 GCCTCTGCTTAGAGGAGCTTTGTTTATTT-TCCAAAGTCATTGA
* *
7943527 GCCTCTGCTTAGAGGAGTTTTGTTTATCTTTTCAAAAGTCATTGA
1 GCCTCTGCTTAGAGGAGCTTTGTTTA--TTTTCCAAAGTCATTGA
* **
7943572 GCCTTTAATTAGAGGAGCTTTG
1 GCCTCTGCTTAGAGGAGCTTTG
7943594 ATCAAGTTTT
Statistics
Matches: 124, Mismatches: 25, Indels: 7
0.79 0.16 0.04
Matches are distributed among these distances:
42 34 0.27
43 4 0.03
44 54 0.44
45 29 0.23
46 3 0.02
ACGTcount: A:0.22, C:0.16, G:0.21, T:0.41
Consensus pattern (43 bp):
GCCTCTGCTTAGAGGAGCTTTGTTTATTTTCCAAAGTCATTGA
Found at i:7943507 original size:86 final size:88
Alignment explanation
Indices: 7943416--7943589 Score: 246
Period size: 86 Copynumber: 2.0 Consensus size: 88
7943406 TAGAAAAGCT
*
7943416 TTGTTTATCTT-TCCAAAGTCATTGAGCCTCTGTTTAGAGGAGCTTTATTTAT-TTTT-AAAGTC
1 TTGTTTAT-TTGTCCAAAGTCATTGAGCCTCTGCTTAGAGGAGCTTTATTTATCTTTTAAAAGTC
* *
7943478 GTTGAGCCTTTACTTAGAGGAGCC
65 ATTGAGCCTTTAATTAGAGGAGCC
* * * *
7943502 TTGTTTATTTGTTCGAAGTCATTGAGCCTCTGCTTAGAGGAGTTTTGTTTATCTTTTCAAAAGTC
1 TTGTTTATTTGTCCAAAGTCATTGAGCCTCTGCTTAGAGGAGCTTTATTTATCTTTT-AAAAGTC
7943567 ATTGAGCCTTTAATTAGAGGAGC
65 ATTGAGCCTTTAATTAGAGGAGC
7943590 TTTGATCAAG
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
85 2 0.03
86 44 0.57
87 4 0.05
89 27 0.35
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (88 bp):
TTGTTTATTTGTCCAAAGTCATTGAGCCTCTGCTTAGAGGAGCTTTATTTATCTTTTAAAAGTCA
TTGAGCCTTTAATTAGAGGAGCC
Found at i:7943807 original size:3 final size:3
Alignment explanation
Indices: 7943784--7943898 Score: 71
Period size: 3 Copynumber: 39.3 Consensus size: 3
7943774 CCCATATTTT
* * **
7943784 TTA TT- TTA TTT TTA TTTA TTA TTA TTG TTA GCA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *
7943828 TTC TT- TTT TTGT TTA TTT TTG TT- TTA TTA TTA TCA TTA TTTA TT-
1 TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
7943872 TTA TTA TTA TTA TTA TTA TTA TT- TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
7943899 CTTTTTTTTT
Statistics
Matches: 90, Mismatches: 13, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
2 12 0.13
3 69 0.77
4 9 0.10
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:7948809 original size:17 final size:16
Alignment explanation
Indices: 7948779--7948813 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
7948769 ATCCTATCTC
7948779 TTTATTTTGATTATAG
1 TTTATTTTGATTATAG
*
7948795 TTTATATTTGCTTATAG
1 TTTAT-TTTGATTATAG
7948812 TT
1 TT
7948814 CATCAATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.23, C:0.03, G:0.11, T:0.63
Consensus pattern (16 bp):
TTTATTTTGATTATAG
Found at i:7958497 original size:21 final size:22
Alignment explanation
Indices: 7958459--7958527 Score: 70
Period size: 21 Copynumber: 3.1 Consensus size: 22
7958449 TAATTAATTA
* *
7958459 ATTAATTTTTAATGTTATTATT
1 ATTAATTTTTATTTTTATTATT
*
7958481 -TTAATTTTTATTTTTATTGTTT
1 ATTAATTTTTATTTTTATT-ATT
*
7958503 ATTACTTTTTATCTTTT-TTATT
1 ATTAATTTTTAT-TTTTATTATT
7958525 ATT
1 ATT
7958528 TAAATAAATA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
21 16 0.41
22 7 0.18
23 12 0.31
24 4 0.10
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.71
Consensus pattern (22 bp):
ATTAATTTTTATTTTTATTATT
Found at i:7959016 original size:3 final size:3
Alignment explanation
Indices: 7959008--7959034 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
7958998 CTAAAAAATG
7959008 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
7959035 TTCAACATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:7959068 original size:17 final size:18
Alignment explanation
Indices: 7959048--7959082 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
7959038 AACATCATAA
7959048 AAAAAACAACA-AAAAAT
1 AAAAAACAACATAAAAAT
*
7959065 AAAAATCAACATAAAAAT
1 AAAAAACAACATAAAAAT
7959083 TAACATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.77, C:0.11, G:0.00, T:0.11
Consensus pattern (18 bp):
AAAAAACAACATAAAAAT
Found at i:7959078 original size:12 final size:12
Alignment explanation
Indices: 7959063--7959092 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7959053 ACAACAAAAA
7959063 ATAAAAATCAAC
1 ATAAAAATCAAC
*
7959075 ATAAAAATTAAC
1 ATAAAAATCAAC
7959087 ATAAAA
1 ATAAAA
7959093 TAAATAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.70, C:0.10, G:0.00, T:0.20
Consensus pattern (12 bp):
ATAAAAATCAAC
Found at i:7961932 original size:21 final size:21
Alignment explanation
Indices: 7961908--7961947 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7961898 CTAGGGGCAT
*
7961908 AGGCCCGAGCATCAGGGACCA
1 AGGCCCGAGCACCAGGGACCA
**
7961929 AGGCTTGAGCACCAGGGAC
1 AGGCCCGAGCACCAGGGAC
7961948 AGTTGCGAGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.30, G:0.35, T:0.07
Consensus pattern (21 bp):
AGGCCCGAGCACCAGGGACCA
Found at i:7966517 original size:12 final size:12
Alignment explanation
Indices: 7966499--7966528 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7966489 TTATTTAAAG
7966499 AAAAATCAAAAT
1 AAAAATCAAAAT
*
7966511 CAAAATCAAAAT
1 AAAAATCAAAAT
7966523 AAAAAT
1 AAAAAT
7966529 GAAGGAAATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.73, C:0.10, G:0.00, T:0.17
Consensus pattern (12 bp):
AAAAATCAAAAT
Found at i:7966750 original size:121 final size:120
Alignment explanation
Indices: 7966594--7967070 Score: 683
Period size: 120 Copynumber: 3.9 Consensus size: 120
7966584 CAAAATTTGA
7966594 TTTTTTGAAA-TTTATTTTTTAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTGA
1 TTTTTTGAAATTTTA-TTTTTAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTGA
* * **
7966658 AAACTTTGATTTTCAAGAAAAACTGATACTTTTAACTTTTCCTCAAAAAAAAACTTT
65 AAACTTTGATTTTCAAGAAAAATTGATACTTTCAACTTTTCCT-AAAAAAAAACTCC
*
7966715 TTTTTTGAAATTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTGAA
1 TTTTTTGAAATTTTATTTTTAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTGAA
* * *
7966780 AACTTTGATTTTCAAGGAAAATTAATACTTTCAACTTTTCCTAAAAAAAAAATCC
66 AACTTTGATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTAAAAAAAAACTCC
* *
7966835 TTTTTTGAAATTTTATTTTTAAGAAATATTGATACTTTCAACTTTTCCTCAAAAATATTTTTGGA
1 TTTTTTGAAATTTTATTTTTAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTGAA
* *
7966900 AACTTTGATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAAAAAC-CC
66 AACTTTGATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTAAAAAAAAACTCC
* *
7966954 TTTTTTGAAATTTTATTTTAAAAAAAAATTGATACTTTCAACTTTTCCTCAAAAAAAAATATTTT
1 TTTTTTGAAATTTTATTTTTAAGAAAAATTGATACTTTCAACTTTTCCTC----AAAAATA--TT
* * * * *
7967019 TTTG-AAA-TTTTATTTTTAAGAAAAATTGATACTTTCAAATTTTTCTCAAAAA
60 TTTGAAAACTTTGATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTAAAAAA
7967071 TATTTTTTTT
Statistics
Matches: 326, Mismatches: 23, Indels: 12
0.90 0.06 0.03
Matches are distributed among these distances:
119 49 0.15
120 121 0.37
121 97 0.30
122 4 0.01
123 46 0.14
124 3 0.01
125 6 0.02
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.44
Consensus pattern (120 bp):
TTTTTTGAAATTTTATTTTTAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTGAA
AACTTTGATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTAAAAAAAAACTCC
Found at i:7967128 original size:6 final size:5
Alignment explanation
Indices: 7967105--7967183 Score: 65
Period size: 5 Copynumber: 15.4 Consensus size: 5
7967095 AAAATTGAAT
*
7967105 AATAA AACAA AATAAA AATGAA AAT-A AA-AA AATAA AATAA AGA-AA
1 AATAA AATAA AAT-AA AAT-AA AATAA AATAA AATAA AATAA A-ATAA
* *
7967150 AGTAA AAAAA AATAAA AATAA AATAA AGATAA AA
1 AATAA AATAA AAT-AA AATAA AATAA A-ATAA AA
7967184 AGAATATGAA
Statistics
Matches: 60, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
4 6 0.10
5 33 0.55
6 21 0.35
ACGTcount: A:0.80, C:0.01, G:0.05, T:0.14
Consensus pattern (5 bp):
AATAA
Found at i:7967136 original size:25 final size:24
Alignment explanation
Indices: 7967102--7967176 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 24
7967092 AAGAAAATTG
*
7967102 AATAATAAAACAAAATAAAAATGAA
1 AATAA-AAAAAAAAATAAAAATGAA
7967127 AATAAAAAAATAAAAT--AAA-GAA
1 AATAAAAAAA-AAAATAAAAATGAA
7967149 AAGT--AAAAAAAAATAAAAAT-AA
1 AA-TAAAAAAAAAAATAAAAATGAA
7967171 AATAAA
1 AATAAA
7967177 GATAAAAAGA
Statistics
Matches: 42, Mismatches: 1, Indels: 16
0.71 0.02 0.27
Matches are distributed among these distances:
20 5 0.12
21 6 0.14
22 12 0.29
23 5 0.12
24 4 0.10
25 10 0.24
ACGTcount: A:0.80, C:0.01, G:0.04, T:0.15
Consensus pattern (24 bp):
AATAAAAAAAAAAATAAAAATGAA
Found at i:7967167 original size:26 final size:26
Alignment explanation
Indices: 7967130--7967198 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 26
7967120 AAATGAAAAT
7967130 AAAAAAATAAAATAAAGA-AAAG-TAA
1 AAAAAAATAAAATAAA-ATAAAGATAA
7967155 AAAAAAATAAAAATAAAATAAAGATAA
1 AAAAAAAT-AAAATAAAATAAAGATAA
* *
7967182 AAAGAATATGAAATAAA
1 AAA-AAAATAAAATAAA
7967199 CCTAATCTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
25 9 0.24
26 12 0.32
27 13 0.34
28 4 0.11
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.14
Consensus pattern (26 bp):
AAAAAAATAAAATAAAATAAAGATAA
Found at i:7968153 original size:19 final size:21
Alignment explanation
Indices: 7968117--7968159 Score: 54
Period size: 19 Copynumber: 2.1 Consensus size: 21
7968107 GATAATTAGA
7968117 AAAATAATAATAAGATAA-AT
1 AAAATAATAATAAGATAAGAT
**
7968137 AAAA-AATAATATTATAAGAT
1 AAAATAATAATAAGATAAGAT
7968157 AAA
1 AAA
7968160 TAAAAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.26
Consensus pattern (21 bp):
AAAATAATAATAAGATAAGAT
Found at i:7968158 original size:24 final size:22
Alignment explanation
Indices: 7968074--7968301 Score: 109
Period size: 22 Copynumber: 10.3 Consensus size: 22
7968064 CCAGCCTTCC
* * * *
7968074 AAAATAAAAATCACATAAAAAA
1 AAAATAATAATAAGATAAATAA
* *
7968096 AAAAT-TTAAT-AGATAATTAGA
1 AAAATAATAATAAGATAAATA-A
7968117 AAAATAATAATAAGATAAATAA
1 AAAATAATAATAAGATAAATAA
7968139 AAAATAATATTATAAGATAAATAA
1 AAAATAATA--ATAAGATAAATAA
*
7968163 AAAA-AATAATAATA-ACAGATAA
1 AAAATAATAATAAGATA-A-ATAA
* *
7968185 ATAGATATATAATTAGATAAAT-A
1 A-AAATA-ATAATAAGATAAATAA
*
7968208 AAAATACATACA-AA-ATAAAATGA
1 AAAATA-ATA-ATAAGAT-AAATAA
* * *
7968231 AAAAGAA-AAAAAG-GAAA-AA
1 AAAATAATAATAAGATAAATAA
* *
7968250 AAAATAAAAATATATATATTAATAA
1 AAAATAATAATA-AGATA--AATAA
*
7968275 ATAATAATAATAA-ATAAATAA
1 AAAATAATAATAAGATAAATAA
*
7968296 TAAATA
1 AAAATA
7968302 CATAGGATAT
Statistics
Matches: 159, Mismatches: 25, Indels: 45
0.69 0.11 0.20
Matches are distributed among these distances:
19 7 0.04
20 14 0.09
21 30 0.19
22 38 0.24
23 26 0.16
24 23 0.14
25 20 0.13
26 1 0.01
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.24
Consensus pattern (22 bp):
AAAATAATAATAAGATAAATAA
Found at i:7968185 original size:46 final size:48
Alignment explanation
Indices: 7968116--7968211 Score: 117
Period size: 46 Copynumber: 2.0 Consensus size: 48
7968106 AGATAATTAG
* *
7968116 AAAAATAATAATAAGATAAATAAA-AAATAATATTATAAGATAAATAAA
1 AAAAATAATAATAAGACAAATAAATAAAT-ATATAATAAGATAAATAAA
* * *
7968164 AAAAATAATAAT-A-ACAGATAAATAGATATATAATTAGATAAATAAA
1 AAAAATAATAATAAGACAAATAAATAAATATATAATAAGATAAATAAA
7968210 AA
1 AA
7968212 TACATACAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
46 26 0.62
47 4 0.10
48 12 0.29
ACGTcount: A:0.69, C:0.01, G:0.05, T:0.25
Consensus pattern (48 bp):
AAAAATAATAATAAGACAAATAAATAAATATATAATAAGATAAATAAA
Found at i:7968328 original size:25 final size:26
Alignment explanation
Indices: 7968269--7968339 Score: 76
Period size: 25 Copynumber: 2.8 Consensus size: 26
7968259 ATATATATAT
* *
7968269 TAATAAATA-ATAATA-ATAAATAAA
1 TAATAAATACATAAAATATAAAGAAA
**
7968293 TAATAAATACATAGGATATAAAGAAA
1 TAATAAATACATAAAATATAAAGAAA
*
7968319 -AATATATACATAAAATATAAA
1 TAATAAATACATAAAATATAAA
7968340 ATAAGAATAA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
24 9 0.23
25 22 0.56
26 8 0.21
ACGTcount: A:0.66, C:0.03, G:0.04, T:0.27
Consensus pattern (26 bp):
TAATAAATACATAAAATATAAAGAAA
Found at i:7968349 original size:11 final size:11
Alignment explanation
Indices: 7968328--7968378 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
7968318 AAATATATAC
7968328 ATAAAATATAAA
1 ATAAAA-ATAAA
*
7968340 ATAAGAATAAA
1 ATAAAAATAAA
7968351 ATAAAAATAACA
1 ATAAAAATAA-A
* *
7968363 A-AAATACAAA
1 ATAAAAATAAA
7968373 ATAAAA
1 ATAAAA
7968379 TTGGACTTAC
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
10 2 0.06
11 23 0.72
12 7 0.22
ACGTcount: A:0.76, C:0.04, G:0.02, T:0.18
Consensus pattern (11 bp):
ATAAAAATAAA
Found at i:7968738 original size:41 final size:43
Alignment explanation
Indices: 7968564--7968944 Score: 516
Period size: 41 Copynumber: 9.1 Consensus size: 43
7968554 TTTGATCAAA
* * * * *
7968564 GCTCCTCTAAACAGAGGCTCAACGAC-TTTGAAAAAATAAATG
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAAGTAAATT
* * *
7968606 GCTCATTTATACAG-GGCACCACGACTTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAAGTAAATT
* *
7968648 GCTCCTCTAAACAGAGACACCATGACTTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAAGTAAATT
*
7968691 GCTCCTCTAAATAGAGGCACCACGACTTTT-G-AAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAAGTAAATT
* *
7968732 GCTCCTCTAAATAGAGGCACCATGAC-TTTGG-AAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAAGTAAATT
* *
7968773 GCTCCTCTAAACAGAGGCACCACAACTTTTGG-AAAGTGAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAAGTAAATT
* *
7968815 GCTCTTCTAAACAGAGGCACCACAAC-TTT-GAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAAGTAAATT
7968856 GCTCCTCTAAACAGAGGCACCACGAC-TTT-GAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAAGTAAATT
7968897 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAA-TAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAAGTAAATT
*
7968939 ACTCCT
1 GCTCCT
7968945 TGACAATCAT
Statistics
Matches: 306, Mismatches: 26, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
40 4 0.01
41 155 0.51
42 89 0.29
43 58 0.19
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.25
Consensus pattern (43 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAAGTAAATT
Found at i:7968831 original size:83 final size:83
Alignment explanation
Indices: 7968564--7968944 Score: 507
Period size: 83 Copynumber: 4.6 Consensus size: 83
7968554 TTTGATCAAA
* * * * * * * *
7968564 GCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAAATAAATGGCTCATTTATACAG-GGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
7968628 GACTTTTGGAAAAGTAAATT
65 GACTTTTGG-AAAGTAAATT
* * *
7968648 GCTCCTCTAAACAGAGACACCATGACTTTTGGAAAAGTAAATTGCTCCTCTAAATAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGG-AAAGTAAATTGCTCCTCTAAACAGAGGCACCA
7968713 CGACTTTT-GAAAGTAAATT
64 CGACTTTTGGAAAGTAAATT
* * *
7968732 GCTCCTCTAAATAGAGGCACCATGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACA
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
*
7968797 ACTTTTGGAAAGTGAATT
66 ACTTTTGGAAAGTAAATT
* * *
7968815 GCTCTTCTAAACAGAGGCACCACAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
*
7968880 AC-TTTGAAAAGTAAATT
66 ACTTTTGGAAAGTAAATT
* *
7968897 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATTACTCCT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAGTAAATTGCTCCT
7968945 TGACAATCAT
Statistics
Matches: 263, Mismatches: 29, Indels: 11
0.87 0.10 0.04
Matches are distributed among these distances:
82 75 0.29
83 94 0.36
84 56 0.21
85 23 0.09
86 15 0.06
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.25
Consensus pattern (83 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
ACTTTTGGAAAGTAAATT
Found at i:7968859 original size:124 final size:124
Alignment explanation
Indices: 7968564--7968944 Score: 532
Period size: 124 Copynumber: 3.0 Consensus size: 124
7968554 TTTGATCAAA
* * * * * * *
7968564 GCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAAATAAATGGCTCATTTATACAG-GGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-AAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
* *
7968628 GACTTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGACACCATGACTTTTGGAAAAGTAAATT
65 GAC-TTTGG-AAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGG-AAAGTAAATT
* * *
7968691 GCTCCTCTAAATAGAGGCACCACGACTTTTG-AAAGTAAATTGCTCCTCTAAATAGAGGCACCAT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
* *
7968755 GACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACAACTTTTGGAAAGTGAATT
65 GACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
* *
7968815 GCTCTTCTAAACAGAGGCACCACAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
* *
7968880 ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
66 ACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
*
7968939 ACTCCT
1 GCTCCT
7968945 TGACAATCAT
Statistics
Matches: 226, Mismatches: 25, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
123 4 0.02
124 123 0.54
125 39 0.17
126 23 0.10
127 33 0.15
128 4 0.02
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.25
Consensus pattern (124 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
ACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
Found at i:7970232 original size:30 final size:28
Alignment explanation
Indices: 7970197--7970258 Score: 70
Period size: 30 Copynumber: 2.1 Consensus size: 28
7970187 TTTGAATATC
**
7970197 TTTTTTCATTTTCTTATTTTTTTCCTTCAT
1 TTTTTTCATCATCTT-TTTTTTTCC-TCAT
* *
7970227 TTTTTTTATCATCTTTTTTTTTTCTCAT
1 TTTTTTCATCATCTTTTTTTTTCCTCAT
7970255 TTTT
1 TTTT
7970259 CATCCATTGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 8 0.29
29 8 0.29
30 12 0.43
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.76
Consensus pattern (28 bp):
TTTTTTCATCATCTTTTTTTTTCCTCAT
Found at i:7970257 original size:14 final size:15
Alignment explanation
Indices: 7970213--7970258 Score: 51
Period size: 14 Copynumber: 3.2 Consensus size: 15
7970203 CATTTTCTTA
* *
7970213 TTTTTTTCCTTCATT
1 TTTTTTTTCATCATT
*
7970228 TTTTTTATCATC-TT
1 TTTTTTTTCATCATT
7970242 TTTTTTTTC-TCATT
1 TTTTTTTTCATCATT
7970256 TTT
1 TTT
7970259 CATCCATTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
13 2 0.08
14 15 0.58
15 9 0.35
ACGTcount: A:0.09, C:0.15, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTTTTTCATCATT
Found at i:7974214 original size:16 final size:14
Alignment explanation
Indices: 7974182--7974208 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7974172 CTGTCCCCAA
7974182 AAATTGATTTTTTG
1 AAATTGATTTTTTG
7974196 AAATTGATTTTTT
1 AAATTGATTTTTT
7974209 AAGAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (14 bp):
AAATTGATTTTTTG
Found at i:7974293 original size:58 final size:58
Alignment explanation
Indices: 7974199--7974604 Score: 489
Period size: 58 Copynumber: 6.9 Consensus size: 58
7974189 TTTTTTGAAA
* * *
7974199 TTGATTTTTTAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAAAATTTTTGGAAACT
1 TTGA-TTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAAAATTTTTGAAAACT
* * *
7974258 TTGATTTTCAAGGAAAACTGATACTTTCAACTTTTCCTCAAAAAAAACCTTTTTTTTAAAA-T
1 TTGATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTC-AAAAAAA----TTTTTGAAAACT
* *
7974320 TTTATTTTTAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAAAACCTTTTTTTG-AAA-T
1 TTGATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAAAA----TTTTTGAAAACT
* * * *
7974380 TTTATTTTTAAGGAAAATTGATAGTTTTAACTTTTCCTCAAAAATATTTTTGAAAACT
1 TTGATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAAAATTTTTGAAAACT
* * * *
7974438 TTGATTTTCAAGAAAAATTGATACTTTCAATTTTTCCTCAAAAATATTTTTGAAAACT
1 TTGATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAAAATTTTTGAAAACT
*
7974496 TTG-TTTTTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTGAAAACT
1 TTGATTTTT-AAGGAAAATTGATACTTTCAACTTTTCCTCAAAAAAATTTTTGAAAACT
* * *
7974554 TTGATTTTTAAGGGAAATTGATACTTTCAA-TTTTTCTCCAAAAATATTTTT
1 TTGATTTTTAAGGAAAATTGATACTTTCAACTTTTCCT-CAAAAAAATTTTT
7974605 TTTATTTTTA
Statistics
Matches: 311, Mismatches: 26, Indels: 21
0.87 0.07 0.06
Matches are distributed among these distances:
56 6 0.02
57 13 0.04
58 170 0.55
59 16 0.05
60 46 0.15
61 16 0.05
62 36 0.12
63 8 0.03
ACGTcount: A:0.36, C:0.12, G:0.08, T:0.44
Consensus pattern (58 bp):
TTGATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAAAATTTTTGAAAACT
Found at i:7974655 original size:6 final size:5
Alignment explanation
Indices: 7974632--7974712 Score: 67
Period size: 5 Copynumber: 15.4 Consensus size: 5
7974622 AAAATTGAAT
*
7974632 AATAA AACAA AATAAA AATGAA AATAA AA-AA AATAA AATAA AGA-AA
1 AATAA AATAA AAT-AA AAT-AA AATAA AATAA AATAA AATAA A-ATAA
* *
7974678 AGTAA AACAAA AATAAA AATAA AATAA AGATAA AA
1 AATAA AA-TAA AAT-AA AATAA AATAA A-ATAA AA
7974713 AGAATATTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 14
0.75 0.08 0.17
Matches are distributed among these distances:
4 4 0.06
5 33 0.53
6 25 0.40
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.14
Consensus pattern (5 bp):
AATAA
Found at i:7974762 original size:13 final size:13
Alignment explanation
Indices: 7974740--7974770 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
7974730 TAATCTAATA
7974740 AAAT-AAAAAAAC
1 AAATAAAAAAAAC
7974752 AAATAAAAAAAAC
1 AAATAAAAAAAAC
7974765 AAATAA
1 AAATAA
7974771 TAAATAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.84, C:0.06, G:0.00, T:0.10
Consensus pattern (13 bp):
AAATAAAAAAAAC
Found at i:7975665 original size:24 final size:23
Alignment explanation
Indices: 7975613--7975716 Score: 76
Period size: 24 Copynumber: 4.6 Consensus size: 23
7975603 GAAAAAAAAT
*
7975613 AGATAATTAGAAAAATAATA-ATA
1 AGATAAATA-AAAAATAATATATA
*
7975636 AGATAAATCAAAAATAATATTATA
1 AGATAAATAAAAAATAATA-TATA
7975660 AGATAAA-AAAATAATAATA-ATAA
1 AGATAAATAAAA-AATAATATAT-A
* * *
7975683 CAGATAAAT-AGATAT-ATA-ATT
1 -AGATAAATAAAAAATAATATATA
7975704 AGATAAATAAAAA
1 AGATAAATAAAAA
7975717 TACATACAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
20 8 0.12
21 2 0.03
22 17 0.26
23 13 0.20
24 26 0.39
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26
Consensus pattern (23 bp):
AGATAAATAAAAAATAATATATA
Found at i:7975733 original size:6 final size:6
Alignment explanation
Indices: 7975724--7975870 Score: 50
Period size: 6 Copynumber: 23.2 Consensus size: 6
7975714 AAATACATAC
* * * * *
7975724 AAAATA AAAAGA AAAA-A AAAGAAA AAAATA TATATTA ATAAATA ATAATA
1 AAAATA AAAATA AAAATA AAA-ATA AAAATA -AAAATA A-AAATA AAAATA
* * * * *
7975774 ATAAATA AATAATA AATACATA GGATATA AAGAA-A AATATA TACATA
1 A-AAATA AA-AATA AA-A-ATA -AAAATA AA-AATA AAAATA AAAATA
* *
7975821 -AAATA TAAAATA AAAAT- CAAATA AAAATA ACAAAAA TAAAATA AAAATA
1 AAAATA -AAAATA AAAATA AAAATA AAAATA A-AAATA -AAAATA AAAATA
7975870 A
1 A
7975871 CAAAAATGCA
Statistics
Matches: 106, Mismatches: 20, Indels: 30
0.68 0.13 0.19
Matches are distributed among these distances:
5 13 0.12
6 46 0.43
7 42 0.40
8 4 0.04
9 1 0.01
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.21
Consensus pattern (6 bp):
AAAATA
Found at i:7975787 original size:24 final size:24
Alignment explanation
Indices: 7975626--7975791 Score: 82
Period size: 24 Copynumber: 7.0 Consensus size: 24
7975616 TAATTAGAAA
7975626 AATAATAATAAGATAAATCAA-AAAT
1 AATAATAATAA-ATAAAT-AATAAAT
* *
7975651 AAT-ATTATAAGATAAA-AAAATAAT
1 AATAATAATAA-ATAAATAATA-AAT
* * *
7975675 AATAATAACAGATAAATAGATATAT
1 AATAATAATAAATAAATA-ATAAAT
*
7975700 AAT--TAGATAAATAAA-AATACAT
1 AATAATA-ATAAATAAATAATAAAT
* * * *
7975722 ACAAAATAA-AAAGAAA-AAAAAAG
1 A-ATAATAATAAATAAATAATAAAT
* * *
7975745 AA-AAAAATATAT-ATTAATAAAT
1 AATAATAATAAATAAATAATAAAT
7975767 AATAATAATAAATAAATAATAAAT
1 AATAATAATAAATAAATAATAAAT
7975791 A
1 A
7975792 CATAGGATAT
Statistics
Matches: 105, Mismatches: 23, Indels: 27
0.68 0.15 0.17
Matches are distributed among these distances:
21 5 0.05
22 18 0.17
23 24 0.23
24 41 0.39
25 15 0.14
26 2 0.02
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.25
Consensus pattern (24 bp):
AATAATAATAAATAAATAATAAAT
Found at i:7975818 original size:25 final size:26
Alignment explanation
Indices: 7975759--7975829 Score: 76
Period size: 25 Copynumber: 2.8 Consensus size: 26
7975749 AAATATATAT
* *
7975759 TAATAAATA-ATAATA-ATAAATAAA
1 TAATAAATACATAAAATATAAAGAAA
**
7975783 TAATAAATACATAGGATATAAAGAAA
1 TAATAAATACATAAAATATAAAGAAA
*
7975809 -AATATATACATAAAATATAAA
1 TAATAAATACATAAAATATAAA
7975830 ATAAAAATCA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
24 9 0.23
25 22 0.56
26 8 0.21
ACGTcount: A:0.66, C:0.03, G:0.04, T:0.27
Consensus pattern (26 bp):
TAATAAATACATAAAATATAAAGAAA
Found at i:7975835 original size:25 final size:25
Alignment explanation
Indices: 7975760--7975843 Score: 73
Period size: 25 Copynumber: 3.3 Consensus size: 25
7975750 AATATATATT
* *
7975760 AATAAATA-ATAATA-ATAAATAAA
1 AATAAATACATAAAATATAAAGAAA
**
7975783 TAATAAATACATAGGATATAAAGAAA
1 -AATAAATACATAAAATATAAAGAAA
* *
7975809 AATATATACATAAAATATAAAATAAA
1 AATAAATACATAAAATAT-AAAGAAA
7975835 AATCAAATA
1 AAT-AAATA
7975844 AAAATAACAA
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
24 8 0.17
25 19 0.40
26 17 0.35
27 4 0.08
ACGTcount: A:0.68, C:0.04, G:0.04, T:0.25
Consensus pattern (25 bp):
AATAAATACATAAAATATAAAGAAA
Found at i:7975857 original size:20 final size:20
Alignment explanation
Indices: 7975832--7975888 Score: 87
Period size: 20 Copynumber: 2.8 Consensus size: 20
7975822 AATATAAAAT
7975832 AAAAATCAAATAAAAATAAC
1 AAAAATCAAATAAAAATAAC
*
7975852 AAAAATAAAATAAAAATAAC
1 AAAAATCAAATAAAAATAAC
7975872 AAAAATGCAAAATAAAA
1 AAAAAT-C-AAATAAAA
7975889 TTGGACTTAC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
20 25 0.76
22 8 0.24
ACGTcount: A:0.77, C:0.07, G:0.02, T:0.14
Consensus pattern (20 bp):
AAAAATCAAATAAAAATAAC
Found at i:7975869 original size:11 final size:11
Alignment explanation
Indices: 7975818--7975870 Score: 65
Period size: 11 Copynumber: 4.9 Consensus size: 11
7975808 AAATATATAC
7975818 ATAAAATATAAA
1 ATAAAA-ATAAA
*
7975830 ATAAAAATCAA
1 ATAAAAATAAA
7975841 ATAAAAAT--A
1 ATAAAAATAAA
*
7975850 ACAAAAATAAA
1 ATAAAAATAAA
7975861 ATAAAAATAA
1 ATAAAAATAA
7975871 CAAAAATGCA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
9 8 0.22
11 22 0.61
12 6 0.17
ACGTcount: A:0.77, C:0.04, G:0.00, T:0.19
Consensus pattern (11 bp):
ATAAAAATAAA
Found at i:7976080 original size:19 final size:18
Alignment explanation
Indices: 7976052--7976105 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 18
7976042 TTACATTTTT
7976052 TATA-TATTCGTGTTAGTC
1 TATATTATTCGTGTTA-TC
*
7976070 -ATGTCTATTCGTGTATATC
1 TATAT-TATTCGTGT-TATC
7976089 TATATTATTCGTGTTAT
1 TATATTATTCGTGTTAT
7976106 ATTTAAATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
17 2 0.07
18 3 0.10
19 20 0.67
20 5 0.17
ACGTcount: A:0.22, C:0.11, G:0.15, T:0.52
Consensus pattern (18 bp):
TATATTATTCGTGTTATC
Found at i:7983447 original size:19 final size:19
Alignment explanation
Indices: 7983423--7983463 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
7983413 GTGACACTGG
7983423 AAACTA-GAGATCTCATCGA
1 AAACTAGGA-ATCTCATCGA
*
7983442 AAACTAGGAATTTCATCGA
1 AAACTAGGAATCTCATCGA
7983461 AAA
1 AAA
7983464 GTCGTCAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 18 0.90
20 2 0.10
ACGTcount: A:0.46, C:0.17, G:0.15, T:0.22
Consensus pattern (19 bp):
AAACTAGGAATCTCATCGA
Found at i:7984364 original size:16 final size:16
Alignment explanation
Indices: 7984343--7984377 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7984333 TCATAAAATC
7984343 TCAGATATGCAAGAAT
1 TCAGATATGCAAGAAT
* *
7984359 TCAGATTTGCAAGATT
1 TCAGATATGCAAGAAT
7984375 TCA
1 TCA
7984378 AGATTTGCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.31
Consensus pattern (16 bp):
TCAGATATGCAAGAAT
Found at i:7984830 original size:22 final size:22
Alignment explanation
Indices: 7984805--7985046 Score: 181
Period size: 22 Copynumber: 10.9 Consensus size: 22
7984795 GGTTTTCTAT
7984805 CTCAAAGATTCTCATTTGAAAA
1 CTCAAAGATTCTCATTTGAAAA
7984827 CTCAAAGATTCTCATTTGAAAA
1 CTCAAAGATTCTCATTTGAAAA
* *
7984849 ATCAAAGTTTCTCATTTG-AAA
1 CTCAAAGATTCTCATTTGAAAA
* * ***
7984870 CTCAAATATTCTTATTTGGGGATTTT
1 CTCAAAGATTCTCATTT---GA-AAA
* * *
7984896 TTTAAAGATTTTCATTT-AAGAA
1 CTCAAAGATTCTCATTTGAA-AA
*
7984918 CTCAAAGATTCTCATTTGAAGATTT
1 CTCAAAGATTCTCATTTGAA-A--A
* * *
7984943 CTTAAAGATTCTTATTT-AAGA
1 CTCAAAGATTCTCATTTGAAAA
* *
7984964 CTAAAAAATTCTCATTTGAAAA
1 CTCAAAGATTCTCATTTGAAAA
* *
7984986 CTCAAAGATTCTC-TTTTAAGA
1 CTCAAAGATTCTCATTTGAAAA
* *
7985007 TTCAAAGCTTCTCATTT-AAAA
1 CTCAAAGATTCTCATTTGAAAA
7985028 CTTC-AAGATTCTCATTTGA
1 C-TCAAAGATTCTCATTTGA
7985047 GGATTTATTA
Statistics
Matches: 169, Mismatches: 38, Indels: 26
0.73 0.16 0.11
Matches are distributed among these distances:
21 62 0.37
22 73 0.43
23 4 0.02
24 3 0.02
25 15 0.09
26 12 0.07
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (22 bp):
CTCAAAGATTCTCATTTGAAAA
Found at i:7984929 original size:48 final size:47
Alignment explanation
Indices: 7984808--7984983 Score: 152
Period size: 47 Copynumber: 3.8 Consensus size: 47
7984798 TTTCTATCTC
* * **
7984808 AAAGATTCTCATTTGAA-AACTCAAAGATTCTCATTTGAA-AAATC--
1 AAAGATTTTCATTT-AAGAACTCAAAAATTCTCATTTGAAGATTTCTT
* * * ** *
7984852 AAAG-TTTCTCATTTGA-AACTCAAATATTCTTATTTGGGGATTTTTTT
1 AAAGATTT-TCATTTAAGAACTCAAAAATTCTCATTTGAAGA-TTTCTT
*
7984899 AAAGATTTTCATTTAAGAACTCAAAGATTCTCATTTGAAGATTTCTT
1 AAAGATTTTCATTTAAGAACTCAAAAATTCTCATTTGAAGATTTCTT
*
7984946 AAAGATTCTT-ATTTAAG-ACTAAAAAATTCTCATTTGAA
1 AAAGATT-TTCATTTAAGAACTCAAAAATTCTCATTTGAA
7984984 AACTCAAAGA
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 21 0.20
44 11 0.10
45 1 0.01
46 19 0.18
47 30 0.28
48 25 0.23
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (47 bp):
AAAGATTTTCATTTAAGAACTCAAAAATTCTCATTTGAAGATTTCTT
Found at i:7985004 original size:43 final size:43
Alignment explanation
Indices: 7984805--7985040 Score: 156
Period size: 43 Copynumber: 5.3 Consensus size: 43
7984795 GGTTTTCTAT
* *
7984805 CTCAAAGATTCTCATTTGAAAACTCAAAGATTCTCATTTGAAAA
1 CTCAAAGATTCTC-TTTTAAGACTCAAAGATTCTCATTTGAAAA
* * * * * ***
7984849 ATCAAAGTTTCTCATTTGAA-ACTCAAATATTCTTATTTGGGGATTTT
1 CTCAAAGATTCTC-TTTTAAGACTCAAAGATTCTCATTT---GA-AAA
* * * * *
7984896 TTTAAAGATTTTCATTTAAGAACTCAAAGATTCTCATTTGAAGATTT
1 CTCAAAGATTCTCTTTTAAG-ACTCAAAGATTCTCATTTGAA-A--A
* * *
7984943 CTTAAAGATTCT-TATTTAAGACTAAAAAATTCTCATTTGAAAA
1 CTCAAAGATTCTCT-TTTAAGACTCAAAGATTCTCATTTGAAAA
* *
7984986 CTCAAAGATTCTCTTTTAAGATTCAAAGCTTCTCATTT-AAAA
1 CTCAAAGATTCTCTTTTAAGACTCAAAGATTCTCATTTGAAAA
7985028 CTTC-AAGATTCTC
1 C-TCAAAGATTCTC
7985041 ATTTGAGGAT
Statistics
Matches: 152, Mismatches: 28, Indels: 26
0.74 0.14 0.13
Matches are distributed among these distances:
42 14 0.09
43 49 0.32
44 19 0.12
45 3 0.02
46 25 0.16
47 26 0.17
48 16 0.11
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.39
Consensus pattern (43 bp):
CTCAAAGATTCTCTTTTAAGACTCAAAGATTCTCATTTGAAAA
Found at i:7985013 original size:21 final size:21
Alignment explanation
Indices: 7984899--7985093 Score: 90
Period size: 21 Copynumber: 8.8 Consensus size: 21
7984889 GGATTTTTTT
* * *
7984899 AAAGATTTTCATTTAAGAACTC
1 AAAGATTCTCTTTTAAG-ATTC
*
7984921 AAAGATTCTCATTTGAAGATTTC
1 AAAGATTCTC-TTTTAAGA-TTC
* *
7984944 TTAAAGATTCT-TATTTAAGACTA
1 --AAAGATTCTCT-TTTAAGATTC
* * * *
7984967 AAAAATTCTCATTTGAAAACTC
1 AAAGATTCTC-TTTTAAGATTC
7984989 AAAGATTCTCTTTTAAGATTC
1 AAAGATTCTCTTTTAAGATTC
* * *
7985010 AAAGCTTCTCATTTAAAACTTC
1 AAAGATTCTCTTTTAAGA-TTC
* * *
7985032 -AAGATTCTCATTTGAGGATTTATT
1 AAAGATTCTC-TTTTAAGA--T-TC
*
7985056 AAAGA-TCATCATTTAAGATTC
1 AAAGATTC-TCTTTTAAGATTC
*
7985077 AAAGATTCTCATTTAAG
1 AAAGATTCTCTTTTAAG
7985094 GATTTACAAT
Statistics
Matches: 130, Mismatches: 29, Indels: 29
0.69 0.15 0.15
Matches are distributed among these distances:
21 54 0.42
22 36 0.28
23 11 0.08
24 14 0.11
25 15 0.12
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (21 bp):
AAAGATTCTCTTTTAAGATTC
Found at i:7989684 original size:25 final size:24
Alignment explanation
Indices: 7989639--7989686 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
7989629 TCTCACCAAA
*
7989639 GAATTTTTTAAAAATTTATCATTT
1 GAATTTTTTAAAAATTCATCATTT
*
7989663 GAATTTTTTATAAATTCCATCATT
1 GAATTTTTTAAAAATT-CATCATT
7989687 GGATAATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.35, C:0.08, G:0.04, T:0.52
Consensus pattern (24 bp):
GAATTTTTTAAAAATTCATCATTT
Found at i:7992922 original size:53 final size:53
Alignment explanation
Indices: 7992821--7992931 Score: 127
Period size: 53 Copynumber: 2.1 Consensus size: 53
7992811 GTATTAGGCA
** *
7992821 TGTTGGCATAGAGCCTTAACGTAATATAATGTGGCAAGCAAAGGCATTG-GATG
1 TGTTGGCATAGAGCCTTAACACAATATAATGTGGCAAGCAAAGACATTGAG-TG
* * * *
7992874 TGTTTGCATGGAGCCTTAACACAATAT-ATGTGGCACGCAAGATACATTGAGTG
1 TGTTGGCATAGAGCCTTAACACAATATAATGTGGCAAGCAA-AGACATTGAGTG
7992927 TGTTG
1 TGTTG
7992932 TCCTAAGAGT
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
52 12 0.25
53 35 0.73
54 1 0.02
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (53 bp):
TGTTGGCATAGAGCCTTAACACAATATAATGTGGCAAGCAAAGACATTGAGTG
Found at i:8002993 original size:22 final size:21
Alignment explanation
Indices: 8002968--8003009 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
8002958 TAATTTTTGC
*
8002968 TAAAAACTAAAAAATTATAAAA
1 TAAAAAATAAAAAATT-TAAAA
*
8002990 TAAAAAATAAAATATTTAAA
1 TAAAAAATAAAAAATTTAAA
8003010 TGAATCTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.26
Consensus pattern (21 bp):
TAAAAAATAAAAAATTTAAAA
Found at i:8003640 original size:3 final size:3
Alignment explanation
Indices: 8003632--8003688 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
8003622 TAGAATACGA
8003632 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8003680 AAT AAT AAT
1 AAT AAT AAT
8003689 GTTATTGTTG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8014901 original size:41 final size:41
Alignment explanation
Indices: 8014806--8014892 Score: 138
Period size: 41 Copynumber: 2.1 Consensus size: 41
8014796 GCCTCTCAGA
* *
8014806 TTTTTAACATTTAAAGTTCGTTGCCTTTGGTTAGAGGAGCT
1 TTTTTAACATTTAAAGTTCGTTGCCTCTGGTCAGAGGAGCT
* *
8014847 TTTTTAACATTTAAAGTTTGTTGCCTCTGGTCAGAGGAGTT
1 TTTTTAACATTTAAAGTTCGTTGCCTCTGGTCAGAGGAGCT
8014888 TTTTT
1 TTTTT
8014893 TAATTTTAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.21, C:0.11, G:0.21, T:0.47
Consensus pattern (41 bp):
TTTTTAACATTTAAAGTTCGTTGCCTCTGGTCAGAGGAGCT
Found at i:8015077 original size:39 final size:39
Alignment explanation
Indices: 8014986--8015585 Score: 455
Period size: 39 Copynumber: 15.3 Consensus size: 39
8014976 TCAGATCTTT
* * * * * * *
8014986 AATTTAAAGTTCGTTGCCGCCGGTCAGAGGAGCCTTTTA
1 AATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCTTTTTG
* * *
8015025 ACATTTAATGTTTGTTGCCTTTGGTTAAAGGAGCTTTTTG
1 A-ATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCTTTTTG
* * *
8015065 AATTTAAAGTTTGTTGCCTCTAGT-AAGAGAAGC-CTTTG
1 AATTTAAAGTTTGTTGCCTCTGGTGAA-AGGAGCTTTTTG
* * * * * *
8015103 AAATTTAAAATTTGTTACCTTTAGTTAAATGAGCTTTTAT-
1 -AATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCTTTT-TG
* * * * *
8015143 CATTTAAAGTTTGTTGCCTCTGGTGAGAGAAGCCTTTTA
1 AATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCTTTTTG
* * * *
8015182 ACATTTAAAGTTTGTTGCTTTTGGTTAAAAGAG-TTTTCTG
1 A-ATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCTTTT-TG
* * *
8015222 AATTTAAAGTTTATTGCCTCTAGTGAGAA-GAGC-CTTTG
1 AATTTAAAGTTTGTTGCCTCTGGTGA-AAGGAGCTTTTTG
* * * *
8015260 AAATTTAAAATTTGTTGCCTTTGGTTAAAAGAGCTTTTAT-
1 -AATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCTTTT-TG
* * * * *
8015300 CATTTAAATTTTGTTGCCTCTGGTGAGAGGAGCCTTTTA
1 AATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCTTTTTG
* * * **
8015339 ATATTTAAAGTTTGTTGCTTTTGGTTAAATAAGCTTTTTG
1 A-ATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCTTTTTG
* * * *
8015379 AATTTAAAGTTTGTTGCCTCTTGTGAGAGGAGCCTTTGG
1 AATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCTTTTTG
* **
8015418 AATTTAAAGTTTGTTGCCTTTGGTTCAAGGAG-TTTTT-
1 AATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCTTTTTG
* * * *
8015455 ATCATTTAAAGTTTATTGCCTCTAGTGAAAAGAGCCTTTTG
1 A--ATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCTTTTTG
* * *
8015496 AATTTAAAGTTTGTTGCCTCCGGTGAGAGGAGTTTTTTCG
1 AATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCTTTTT-G
* * *
8015536 -ATTTAAAGTTTGTTACCTCTGGTGAAAGGAGATTTTTT
1 AATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCTTTTTG
8015574 AATTTAAAGTTT
1 AATTTAAAGTTT
8015586 CATAATCTCT
Statistics
Matches: 435, Mismatches: 103, Indels: 46
0.74 0.18 0.08
Matches are distributed among these distances:
37 1 0.00
38 15 0.03
39 316 0.73
40 100 0.23
41 3 0.01
ACGTcount: A:0.26, C:0.11, G:0.21, T:0.42
Consensus pattern (39 bp):
AATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCTTTTTG
Found at i:8015137 original size:78 final size:78
Alignment explanation
Indices: 8014985--8015514 Score: 597
Period size: 78 Copynumber: 6.8 Consensus size: 78
8014975 CTCAGATCTT
* * ** * * * *
8014985 TAATTTAAAGTTCGTTGCCGCCGGTCAGAGGAGCCTTTTAACATTTAATGTTTGTTGCCTTTGGT
1 TAATTTAAAGTTTGTTGCCTCTAGTGAGAGAAGCCTTTGAA-ATTTAAAGTTTGTTGCCTTTGGT
*
8015050 TAAAGGAGCTTTT-
65 TAAAAGAGCTTTTA
* * * *
8015063 TGAATTTAAAGTTTGTTGCCTCTAGTAAGAGAAGCCTTTGAAATTTAAAATTTGTTACCTTTAGT
1 T-AATTTAAAGTTTGTTGCCTCTAGTGAGAGAAGCCTTTGAAATTTAAAGTTTGTTGCCTTTGGT
*
8015128 TAAATGAGCTTTTA
65 TAAAAGAGCTTTTA
* * * *
8015142 TCATTTAAAGTTTGTTGCCTCTGGTGAGAGAAGCCTTTTAACATTTAAAGTTTGTTGCTTTTGGT
1 TAATTTAAAGTTTGTTGCCTCTAGTGAGAGAAGCCTTTGAA-ATTTAAAGTTTGTTGCCTTTGGT
*
8015207 TAAAAGAG-TTTTC
65 TAAAAGAGCTTTTA
* *
8015220 TGAATTTAAAGTTTATTGCCTCTAGTGAGA-AGAGCCTTTGAAATTTAAAATTTGTTGCCTTTGG
1 T-AATTTAAAGTTTGTTGCCTCTAGTGAGAGA-AGCCTTTGAAATTTAAAGTTTGTTGCCTTTGG
8015284 TTAAAAGAGCTTTTA
64 TTAAAAGAGCTTTTA
* * * * * *
8015299 TCATTTAAATTTTGTTGCCTCTGGTGAGAGGAGCCTTTTAATATTTAAAGTTTGTTGCTTTTGGT
1 TAATTTAAAGTTTGTTGCCTCTAGTGAGAGAAGCCTTTGAA-ATTTAAAGTTTGTTGCCTTTGGT
8015364 TAAATA-AGCTTTT-
65 TAAA-AGAGCTTTTA
* * *
8015377 TGAATTTAAAGTTTGTTGCCTCTTGTGAGAGGAGCCTTTGGAATTTAAAGTTTGTTGCCTTTGGT
1 T-AATTTAAAGTTTGTTGCCTCTAGTGAGAGAAGCCTTTGAAATTTAAAGTTTGTTGCCTTTGGT
* * *
8015442 TCAAGGAGTTTTTA
65 TAAAAGAGCTTTTA
* * *
8015456 TCATTTAAAGTTTATTGCCTCTAGTGA-AAAGAGCCTTTTG-AATTTAAAGTTTGTTGCCT
1 TAATTTAAAGTTTGTTGCCTCTAGTGAGAGA-AGCC-TTTGAAATTTAAAGTTTGTTGCCT
8015515 CCGGTGAGAG
Statistics
Matches: 387, Mismatches: 51, Indels: 28
0.83 0.11 0.06
Matches are distributed among these distances:
77 1 0.00
78 214 0.55
79 171 0.44
80 1 0.00
ACGTcount: A:0.26, C:0.12, G:0.20, T:0.43
Consensus pattern (78 bp):
TAATTTAAAGTTTGTTGCCTCTAGTGAGAGAAGCCTTTGAAATTTAAAGTTTGTTGCCTTTGGTT
AAAAGAGCTTTTA
Found at i:8015273 original size:157 final size:157
Alignment explanation
Indices: 8014987--8015512 Score: 738
Period size: 157 Copynumber: 3.4 Consensus size: 157
8014977 CAGATCTTTA
* * * * * * *
8014987 ATTTAAAGTTCGTTGCCGCCGGTCAGAGGAGCCTTTTAACATTTAATGTTTGTTGCCTTTGGTTA
1 ATTTAAAGTTTGTTGCCTCTGGTGAGAGAAGCCTTTTAACATTTAAAGTTTGTTGCTTTTGGTTA
* *
8015052 AAGGAGCTTTTTGAATTTAAAGTTTGTTGCCTCTAGTAAG-AGAAGCCTTTGAAATTTAAAATTT
66 AAAGAGCTTTTTGAATTTAAAGTTTGTTGCCTCTAGTGAGAAG-AGCCTTTGAAATTTAAAATTT
* * *
8015116 GTTACCTTTAGTTAAATGAGCTTTTATC
130 GTTGCCTTTGGTTAAAAGAGCTTTTATC
8015144 ATTTAAAGTTTGTTGCCTCTGGTGAGAGAAGCCTTTTAACATTTAAAGTTTGTTGCTTTTGGTTA
1 ATTTAAAGTTTGTTGCCTCTGGTGAGAGAAGCCTTTTAACATTTAAAGTTTGTTGCTTTTGGTTA
*
8015209 AAAGAG-TTTTCTGAATTTAAAGTTTATTGCCTCTAGTGAGAAGAGCCTTTGAAATTTAAAATTT
66 AAAGAGCTTTT-TGAATTTAAAGTTTGTTGCCTCTAGTGAGAAGAGCCTTTGAAATTTAAAATTT
8015273 GTTGCCTTTGGTTAAAAGAGCTTTTATC
130 GTTGCCTTTGGTTAAAAGAGCTTTTATC
* * *
8015301 ATTTAAATTTTGTTGCCTCTGGTGAGAGGAGCCTTTTAATATTTAAAGTTTGTTGCTTTTGGTTA
1 ATTTAAAGTTTGTTGCCTCTGGTGAGAGAAGCCTTTTAACATTTAAAGTTTGTTGCTTTTGGTTA
* * * *
8015366 AATA-AGCTTTTTGAATTTAAAGTTTGTTGCCTCTTGTGAGAGGAGCCTTTGGAATTTAAAGTTT
66 AA-AGAGCTTTTTGAATTTAAAGTTTGTTGCCTCTAGTGAGAAGAGCCTTTGAAATTTAAAATTT
* * *
8015430 GTTGCCTTTGGTTCAAGGAGTTTTTATC
130 GTTGCCTTTGGTTAAAAGAGCTTTTATC
* * * *
8015458 ATTTAAAGTTTATTGCCTCTAGTGA-AAAGAGCCTTTTGA-ATTTAAAGTTTGTTGC
1 ATTTAAAGTTTGTTGCCTCTGGTGAGAGA-AGCCTTTTAACATTTAAAGTTTGTTGC
8015513 CTCCGGTGAG
Statistics
Matches: 334, Mismatches: 30, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
156 21 0.06
157 306 0.92
158 7 0.02
ACGTcount: A:0.26, C:0.11, G:0.20, T:0.43
Consensus pattern (157 bp):
ATTTAAAGTTTGTTGCCTCTGGTGAGAGAAGCCTTTTAACATTTAAAGTTTGTTGCTTTTGGTTA
AAAGAGCTTTTTGAATTTAAAGTTTGTTGCCTCTAGTGAGAAGAGCCTTTGAAATTTAAAATTTG
TTGCCTTTGGTTAAAAGAGCTTTTATC
Found at i:8015527 original size:78 final size:78
Alignment explanation
Indices: 8015015--8015585 Score: 561
Period size: 78 Copynumber: 7.3 Consensus size: 78
8015005 CCGGTCAGAG
* *
8015015 GAGCCTTTTAACATTTAATGTTTGTTGCCTTTGGTTAAAGGAGCTTTTTGA--ATTTAAAGTTTG
1 GAGCCTTTTGA-ATTTAAAGTTTGTTGCCTTTGGTTAAAGGAG-TTTTT-ATCATTTAAAGTTTG
*
8015078 TTGCCTCTAGT-AAGA
63 TTGCCTCTAGTGAAAA
* * * * *
8015093 GAAGCC-TTTGAAATTTAAAATTTGTTACCTTTAGTTAAATGAGCTTTTATCATTTAAAGTTTGT
1 G-AGCCTTTTG-AATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGTTTTTATCATTTAAAGTTTGT
* *
8015157 TGCCTCTGGTG-AGA
64 TGCCTCTAGTGAAAA
* * *
8015171 GAAGCCTTTTAACATTTAAAGTTTGTTGCTTTTGGTTAAAAGAGTTTTCTGA--ATTTAAAGTTT
1 G-AGCCTTTTGA-ATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGTTTT-T-ATCATTTAAAGTTT
* *
8015234 ATTGCCTCTAGTGAGAA
62 GTTGCCTCTAGTGAAAA
* * * *
8015251 GAGCC-TTTGAAATTTAAAATTTGTTGCCTTTGGTTAAAAGAGCTTTTATCATTTAAATTTTGTT
1 GAGCCTTTTG-AATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGTTTTTATCATTTAAAGTTTGTT
* * *
8015315 GCCTCTGGTGAGAG
65 GCCTCTAGTGAAAA
* * **
8015329 GAGCCTTTTAATATTTAAAGTTTGTTGCTTTTGGTTAAATAAGCTTTTTGA--ATTTAAAGTTTG
1 GAGCCTTTTGA-ATTTAAAGTTTGTTGCCTTTGGTTAAAGGAG-TTTTT-ATCATTTAAAGTTTG
* * *
8015392 TTGCCTCTTGTGAGAG
63 TTGCCTCTAGTGAAAA
* * *
8015408 GAGCCTTTGGAATTTAAAGTTTGTTGCCTTTGGTTCAAGGAGTTTTTATCATTTAAAGTTTATTG
1 GAGCCTTTTGAATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGTTTTTATCATTTAAAGTTTGTTG
8015473 CCTCTAGTGAAAA
66 CCTCTAGTGAAAA
** * *
8015486 GAGCCTTTTGAATTTAAAGTTTGTTGCCTCCGGTGAGAGGAGTTTTT-TCGATTTAAAGTTTGTT
1 GAGCCTTTTGAATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGTTTTTATC-ATTTAAAGTTTGTT
* * *
8015550 ACCTCTGGTGAAAG
65 GCCTCTAGTGAAAA
** *
8015564 GAGATTTTTTAATTTAAAGTTT
1 GAGCCTTTTGAATTTAAAGTTT
8015586 CATAATCTCT
Statistics
Matches: 415, Mismatches: 58, Indels: 40
0.81 0.11 0.08
Matches are distributed among these distances:
76 3 0.01
77 12 0.03
78 262 0.63
79 129 0.31
80 7 0.02
81 2 0.00
ACGTcount: A:0.26, C:0.11, G:0.20, T:0.43
Consensus pattern (78 bp):
GAGCCTTTTGAATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGTTTTTATCATTTAAAGTTTGTTG
CCTCTAGTGAAAA
Found at i:8016175 original size:19 final size:19
Alignment explanation
Indices: 8016153--8016195 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
8016143 ATTTTTGATC
*
8016153 TTTAT-TTTGATTTTGATTT
1 TTTATGTTTGATGTT-ATTT
*
8016172 TTTATGTTTTATGTTATTT
1 TTTATGTTTGATGTTATTT
8016191 TTTAT
1 TTTAT
8016196 ATTTTTTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.16, C:0.00, G:0.09, T:0.74
Consensus pattern (19 bp):
TTTATGTTTGATGTTATTT
Found at i:8016183 original size:26 final size:25
Alignment explanation
Indices: 8016126--8016191 Score: 62
Period size: 25 Copynumber: 2.6 Consensus size: 25
8016116 AGGTTTTTTC
*
8016126 TTTTCTTTTGATTTTTAATTTTTGAT
1 TTTTATTTTGA-TTTTAATTTTTGAT
* * *
8016152 CTTTATTTTGATTTTGATTTTTTAT
1 TTTTATTTTGATTTTAATTTTTGAT
*
8016177 GTTTTATGTT-ATTTT
1 -TTTTATTTTGATTTT
8016192 TTATATTTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
25 17 0.52
26 16 0.48
ACGTcount: A:0.15, C:0.03, G:0.09, T:0.73
Consensus pattern (25 bp):
TTTTATTTTGATTTTAATTTTTGAT
Found at i:8016240 original size:19 final size:18
Alignment explanation
Indices: 8016207--8016245 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
8016197 TTTTTTATAA
8016207 TGTTATTATTATTATTAT
1 TGTTATTATTATTATTAT
*
8016225 TGTTATTTTATATTATTAT
1 TGTTATTAT-TATTATTAT
8016244 TG
1 TG
8016246 GTAATAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.26, C:0.00, G:0.08, T:0.67
Consensus pattern (18 bp):
TGTTATTATTATTATTAT
Found at i:8029823 original size:1 final size:1
Alignment explanation
Indices: 8029817--8029844 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
8029807 TGTCAGCATC
8029817 GGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGG
8029845 AATTTCCTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:8032297 original size:35 final size:34
Alignment explanation
Indices: 8032258--8032329 Score: 101
Period size: 35 Copynumber: 2.1 Consensus size: 34
8032248 AATAGATATA
8032258 TATTTGAATGGT-TATATCTATACAAATAAAAAATC
1 TATTTGAAT-GTCTATATCTATACAAA-AAAAAATC
* *
8032293 TATTTGAATGTCTATATCTGTACAAAAAAATATC
1 TATTTGAATGTCTATATCTATACAAAAAAAAATC
8032327 TAT
1 TAT
8032330 CTTATTATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
34 12 0.35
35 22 0.65
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39
Consensus pattern (34 bp):
TATTTGAATGTCTATATCTATACAAAAAAAAATC
Found at i:8034528 original size:13 final size:13
Alignment explanation
Indices: 8034508--8034559 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 13
8034498 ATAGTATGTT
8034508 TATTAAATTAATA
1 TATTAAATTAATA
* *
8034521 TCTTAAATTAAAA
1 TATTAAATTAATA
8034534 TATTAAA-TAATA
1 TATTAAATTAATA
**
8034546 -ATTTTATTAATA
1 TATTAAATTAATA
8034558 TA
1 TA
8034560 AGACAAATAA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
11 4 0.13
12 9 0.29
13 18 0.58
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (13 bp):
TATTAAATTAATA
Found at i:8035415 original size:27 final size:28
Alignment explanation
Indices: 8035383--8035464 Score: 89
Period size: 27 Copynumber: 2.9 Consensus size: 28
8035373 TGAAATTATA
8035383 ATAAAATATTTAATA-AATATTTAAAATT
1 ATAAAATATTTAATATAATATTT-AAATT
8035411 -TAAAA-ATTTTAATATAATATTTAAATT
1 ATAAAATA-TTTAATATAATATTTAAATT
*
8035438 ATAAATATATTGTTAATATAGTATTTA
1 ATAAA-ATA-T-TTAATATAATATTTA
8035465 TTTGATATAA
Statistics
Matches: 47, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
26 1 0.02
27 17 0.36
28 11 0.23
29 1 0.02
30 3 0.06
31 14 0.30
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (28 bp):
ATAAAATATTTAATATAATATTTAAATT
Found at i:8035417 original size:28 final size:29
Alignment explanation
Indices: 8035375--8035464 Score: 96
Period size: 31 Copynumber: 3.0 Consensus size: 29
8035365 AAGAAATGTG
8035375 AAATTATAATAAAATATTTAATA-AATATTT
1 AAATTAT-A-AAAATATTTAATATAATATTT
8035405 AAAATT-TAAAAAT-TTTAATATAATATTT
1 -AAATTATAAAAATATTTAATATAATATTT
* *
8035433 AAATTATAAATATATTGTTAATATAGTATTT
1 AAATTATAAAAATA-T-TTAATATAATATTT
8035464 A
1 A
8035465 TTTGATATAA
Statistics
Matches: 52, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
27 12 0.23
28 18 0.35
29 1 0.02
30 2 0.04
31 19 0.37
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (29 bp):
AAATTATAAAAATATTTAATATAATATTT
Found at i:8035433 original size:21 final size:20
Alignment explanation
Indices: 8035375--8035435 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 20
8035365 AAGAAATGTG
*
8035375 AAATTATAATAAAATATTTAA
1 AAATTTTAAT-AAATATTTAA
*
8035396 TAAATATT--TAAA-ATTTAA
1 -AAATTTTAATAAATATTTAA
8035414 AAATTTTAATATAATATTTAA
1 AAATTTTAATA-AATATTTAA
8035435 A
1 A
8035436 TTATAAATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
17 6 0.19
18 6 0.19
19 5 0.16
20 3 0.09
21 7 0.22
22 5 0.16
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
AAATTTTAATAAATATTTAA
Found at i:8038746 original size:2 final size:2
Alignment explanation
Indices: 8038739--8038786 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
8038729 TTGATCCCTC
* *
8038739 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AC AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8038781 AT AT AT
1 AT AT AT
8038787 TGTAGACATC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:8038897 original size:3 final size:3
Alignment explanation
Indices: 8038883--8038987 Score: 85
Period size: 3 Copynumber: 34.7 Consensus size: 3
8038873 AATTTAAATT
* *
8038883 TTA TTT TTA TTA TTA TTA TTA TTA TTA TTA TTTA TCTA TTA ATA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA T-TA TTA TTA TTA
* *
8038929 TT- TTA TTA TTTA TCTA TTA TTA TTA TT- TTT TTA GTTA TCTA TTA ATA
1 TTA TTA TTA -TTA T-TA TTA TTA TTA TTA TTA TTA -TTA T-TA TTA TTA
8038976 -TA TT- TTA TTA TT
1 TTA TTA TTA TTA TT
8038988 TATCTATTTT
Statistics
Matches: 86, Mismatches: 6, Indels: 20
0.77 0.05 0.18
Matches are distributed among these distances:
2 10 0.12
3 58 0.67
4 18 0.21
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8038911 original size:24 final size:23
Alignment explanation
Indices: 8038881--8038995 Score: 117
Period size: 24 Copynumber: 4.7 Consensus size: 23
8038871 TTAATTTAAA
8038881 TTTTATTTTTAT-TATTATTATT
1 TTTTATTTTTATCTATTATTATT
*
8038903 ATTATTATTATTTATCTATTAATATT
1 -TT-TTATT-TTTATCTATTATTATT
8038929 TTTTATTATTTATCTATTATTATT
1 TTTTATT-TTTATCTATTATTATT
* *
8038953 ATTTT-TTTAGTTATCTATTAATATA
1 -TTTTATTT--TTATCTATTATTATT
8038978 TTTTATTATTTATCTATT
1 TTTTATT-TTTATCTATT
8038996 TTTTTTCTTG
Statistics
Matches: 80, Mismatches: 4, Indels: 15
0.81 0.04 0.15
Matches are distributed among these distances:
23 3 0.04
24 41 0.51
25 26 0.32
26 10 0.12
ACGTcount: A:0.28, C:0.03, G:0.01, T:0.68
Consensus pattern (23 bp):
TTTTATTTTTATCTATTATTATT
Found at i:8038971 original size:49 final size:50
Alignment explanation
Indices: 8038880--8038995 Score: 184
Period size: 49 Copynumber: 2.4 Consensus size: 50
8038870 TTTAATTTAA
*
8038880 ATTTTATT-TTTAT-TATTATTATTATTATTATTATTTATCTATTAATAT
1 ATTTTATTATTTATCTATTATTATTATTATTATTAGTTATCTATTAATAT
* *
8038928 TTTTTATTATTTATCTATTATTATTATT-TTTTTAGTTATCTATTAATAT
1 ATTTTATTATTTATCTATTATTATTATTATTATTAGTTATCTATTAATAT
8038977 ATTTTATTATTTATCTATT
1 ATTTTATTATTTATCTATT
8038996 TTTTTTCTTG
Statistics
Matches: 62, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
48 7 0.11
49 42 0.68
50 13 0.21
ACGTcount: A:0.28, C:0.03, G:0.01, T:0.67
Consensus pattern (50 bp):
ATTTTATTATTTATCTATTATTATTATTATTATTAGTTATCTATTAATAT
Found at i:8047440 original size:22 final size:22
Alignment explanation
Indices: 8047415--8047459 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
8047405 TTCTAGAAGA
8047415 ATAATACTATCCTATAATAGTG
1 ATAATACTATCCTATAATAGTG
8047437 ATAATACTATCCTATAATAGTG
1 ATAATACTATCCTATAATAGTG
8047459 A
1 A
8047460 GGTTAAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.42, C:0.13, G:0.09, T:0.36
Consensus pattern (22 bp):
ATAATACTATCCTATAATAGTG
Found at i:8050300 original size:42 final size:40
Alignment explanation
Indices: 8050138--8050300 Score: 121
Period size: 42 Copynumber: 3.8 Consensus size: 40
8050128 GATTGTCAAA
* *
8050138 GAGCAATTTACTTTTAAAAGTTGTGGTGCCT-TTTCATAGAT
1 GAGCAATTTACTTTTAAAAGTTGTGGAGCCTCTTT--TAGAG
* * *
8050179 GAGCAATTTACTTTTAAAAAGTCGTGGTTGCCTCTACTTAGAG
1 GAGCAATTTACTTTT-AAAAGTTGTGG-AGCCTCT-TTTAGAG
* ** * *
8050222 AAGCTTTGTTTATTTCTTTAAAAGTTGTGGAACCTCTGTTTAGAG
1 GAGC--AATTTA-CT-TTTAAAAGTTGTGGAGCCTCT-TTTAGAG
*
8050267 GAGCAATTTACTTTTCAAAAGTTGTTGAGCCTCT
1 GAGCAATTTACTTTT-AAAAGTTGTGGAGCCTCT
8050301 ACTTAAATGA
Statistics
Matches: 95, Mismatches: 18, Indels: 17
0.73 0.14 0.13
Matches are distributed among these distances:
41 18 0.19
42 27 0.28
43 16 0.17
44 1 0.01
45 19 0.20
46 11 0.12
47 3 0.03
ACGTcount: A:0.26, C:0.14, G:0.20, T:0.40
Consensus pattern (40 bp):
GAGCAATTTACTTTTAAAAGTTGTGGAGCCTCTTTTAGAG
Found at i:8050338 original size:44 final size:44
Alignment explanation
Indices: 8050185--8050403 Score: 167
Period size: 44 Copynumber: 5.0 Consensus size: 44
8050175 AGATGAGCAA
* * * * * *
8050185 TTTACTTTTAAAAAGTCGTGGTTGCCTCTACTTAGAGAAGCTTTG
1 TTTATTTTTCAAAAGTCGTTG-AGCCTCTACTTAAAGGAGCTTTG
* * * * ** * **
8050230 TTTATTTCTTTAAAAGTTGTGGAACCTCTGTTTAGAGGAGC--AA
1 TTTATTT-TTCAAAAGTCGTTGAGCCTCTACTTAAAGGAGCTTTG
* * *
8050273 TTTACTTTTCAAAAGTTGTTGAGCCTCTACTTAAATGAGCTTTG
1 TTTATTTTTCAAAAGTCGTTGAGCCTCTACTTAAAGGAGCTTTG
* * * *
8050317 TTTATTTTTCAAAAATCGTTGAGCCTCTGCTTATAGGAGCTTTA
1 TTTATTTTTCAAAAGTCGTTGAGCCTCTACTTAAAGGAGCTTTG
* *
8050361 TTTATTTTTTC--AAGTCATTGAGCCTCTACTTAGAGGAGCTTTG
1 TTTA-TTTTTCAAAAGTCGTTGAGCCTCTACTTAAAGGAGCTTTG
8050404 ATCAAAATTT
Statistics
Matches: 138, Mismatches: 32, Indels: 10
0.77 0.18 0.06
Matches are distributed among these distances:
42 26 0.19
43 33 0.24
44 41 0.30
45 26 0.19
46 12 0.09
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (44 bp):
TTTATTTTTCAAAAGTCGTTGAGCCTCTACTTAAAGGAGCTTTG
Found at i:8050627 original size:3 final size:3
Alignment explanation
Indices: 8050619--8050746 Score: 111
Period size: 3 Copynumber: 41.3 Consensus size: 3
8050609 TTTTTAATTT
8050619 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTTA TCTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA T-TA
* * *
8050666 TTA ATA TTT TTA TTA TTTA TCTA TTG TTA TTA TT- TT- TTA GTTA TCTA
1 TTA TTA TTA TTA TTA -TTA T-TA TTA TTA TTA TTA TTA TTA -TTA T-TA
* *
8050713 TTA ATA -TA TT- TTA TTA TTTA TCTA TTA TTT TTA T
1 TTA TTA TTA TTA TTA TTA -TTA T-TA TTA TTA TTA T
8050747 ATTTATCTTT
Statistics
Matches: 105, Mismatches: 9, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
2 8 0.08
3 73 0.70
4 24 0.23
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:8050713 original size:24 final size:25
Alignment explanation
Indices: 8050619--8050752 Score: 154
Period size: 24 Copynumber: 5.5 Consensus size: 25
8050609 TTTTTAATTT
8050619 TTATTATTATTATTA-TTAT-TATTA
1 TTATTATT-TTATTATTTATCTATTA
8050643 TTATTATTATTATTATTTATCTATTA
1 TTATTATT-TTATTATTTATCTATTA
* *
8050669 ATA-T-TTTTATTATTTATCTATTG
1 TTATTATTTTATTATTTATCTATTA
*
8050692 TTATTATTTT-TTAGTTATCTATTA
1 TTATTATTTTATTATTTATCTATTA
*
8050716 ATA-TATTTTATTATTTATCTATTA
1 TTATTATTTTATTATTTATCTATTA
*
8050740 TTTTTATATTTAT
1 TTATTAT-TTTAT
8050753 CTTTTTTTTT
Statistics
Matches: 94, Mismatches: 9, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
23 24 0.26
24 46 0.49
25 12 0.13
26 12 0.13
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.66
Consensus pattern (25 bp):
TTATTATTTTATTATTTATCTATTA
Found at i:8053667 original size:14 final size:14
Alignment explanation
Indices: 8053648--8053678 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8053638 TTTTATTTTT
8053648 AAATATATTTTATA
1 AAATATATTTTATA
*
8053662 AAATATGTTTTATA
1 AAATATATTTTATA
8053676 AAA
1 AAA
8053679 AAAGAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
AAATATATTTTATA
Found at i:8054771 original size:38 final size:39
Alignment explanation
Indices: 8054724--8054810 Score: 90
Period size: 38 Copynumber: 2.2 Consensus size: 39
8054714 TATTAAAAAC
*
8054724 AAAATTATAACTAATAAA-TT-ATATTTCAATAAAA-ATAT
1 AAAAATATAA-TAATAAATTTAATATTT-AATAAAATATAT
** *
8054762 AAAAATATAATTTTAAATTTAATATTTTATAAAATATAT
1 AAAAATATAATAATAAATTTAATATTTAATAAAATATAT
8054801 ATAAAATATA
1 A-AAAATATA
8054811 TAAAATTTTG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
37 5 0.12
38 17 0.41
39 11 0.27
40 8 0.20
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (39 bp):
AAAAATATAATAATAAATTTAATATTTAATAAAATATAT
Found at i:8055948 original size:14 final size:13
Alignment explanation
Indices: 8055922--8055947 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8055912 GCTTTTTATT
8055922 TTTTCTTTTAAAA
1 TTTTCTTTTAAAA
8055935 TTTTCTTTTAAAA
1 TTTTCTTTTAAAA
8055948 AGCTTAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.62
Consensus pattern (13 bp):
TTTTCTTTTAAAA
Found at i:8056037 original size:2 final size:2
Alignment explanation
Indices: 8056030--8056055 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8056020 TGATTCTATC
8056030 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8056056 GTATGTATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8056700 original size:2 final size:2
Alignment explanation
Indices: 8056693--8056727 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
8056683 TCCAGCATTG
8056693 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8056728 GATTATGATT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:8058289 original size:2 final size:2
Alignment explanation
Indices: 8058282--8058308 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8058272 ATTTTGTTCT
8058282 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
8058309 TATTAATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8058568 original size:9 final size:9
Alignment explanation
Indices: 8058554--8058583 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
8058544 GCTACAAGGG
*
8058554 AGAACAAGA
1 AGAACAATA
8058563 AGAACAATA
1 AGAACAATA
8058572 AGAACAATA
1 AGAACAATA
8058581 AGA
1 AGA
8058584 GGGAACACAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.67, C:0.10, G:0.17, T:0.07
Consensus pattern (9 bp):
AGAACAATA
Found at i:8059111 original size:11 final size:12
Alignment explanation
Indices: 8059091--8059117 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
8059081 GTTTCATAGG
8059091 TTTTCTTTTTTT
1 TTTTCTTTTTTT
8059103 TTTTCTTTTTTT
1 TTTTCTTTTTTT
8059115 TTT
1 TTT
8059118 AAATTTTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (12 bp):
TTTTCTTTTTTT
Found at i:8059155 original size:15 final size:14
Alignment explanation
Indices: 8059137--8059190 Score: 65
Period size: 13 Copynumber: 3.8 Consensus size: 14
8059127 TTTTGATTTT
*
8059137 ATTTATTTTGTGTTG
1 ATTT-TTTTATGTTG
8059152 ATTTTTTTTATGTTG
1 A-TTTTTTTATGTTG
*
8059167 ATTTTTTTAT-TTC
1 ATTTTTTTATGTTG
8059180 ATTTTTTTATG
1 ATTTTTTTATG
8059191 ATATTATTGT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
13 12 0.34
14 9 0.26
15 11 0.31
16 3 0.09
ACGTcount: A:0.15, C:0.02, G:0.11, T:0.72
Consensus pattern (14 bp):
ATTTTTTTATGTTG
Found at i:8059206 original size:9 final size:9
Alignment explanation
Indices: 8059192--8059222 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
8059182 TTTTTTATGA
8059192 TATTATTGT
1 TATTATTGT
*
8059201 TATTATTAT
1 TATTATTGT
8059210 TATTATTGT
1 TATTATTGT
8059219 TATT
1 TATT
8059223 TTATATTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (9 bp):
TATTATTGT
Found at i:8059440 original size:17 final size:18
Alignment explanation
Indices: 8059404--8059446 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
8059394 ATTTTTGCTA
*
8059404 AAAAAAATAATAAATTAT
1 AAAAAAATAATAAATAAT
*
8059422 AAAAAAATGATAAA-AAT
1 AAAAAAATAATAAATAAT
*
8059439 AAATAAAT
1 AAAAAAAT
8059447 TGTTTAAATG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (18 bp):
AAAAAAATAATAAATAAT
Found at i:8071716 original size:40 final size:40
Alignment explanation
Indices: 8071639--8071716 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
8071629 ACTTATCAGA
*
8071639 TTTTAACATTTAAAGTTTGTTGCCTCTGGTCATAAGAGCC
1 TTTTAACATTTAAAGTTTGTTGCCTCTGGTCAAAAGAGCC
* * *
8071679 TTTTAACATTTAAAGTTTGTTGTCTGTGGTTAAAAGAG
1 TTTTAACATTTAAAGTTTGTTGCCTCTGGTCAAAAGAG
8071717 TTTTTTTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.27, C:0.12, G:0.19, T:0.42
Consensus pattern (40 bp):
TTTTAACATTTAAAGTTTGTTGCCTCTGGTCAAAAGAGCC
Found at i:8072028 original size:39 final size:39
Alignment explanation
Indices: 8071854--8072355 Score: 459
Period size: 39 Copynumber: 13.1 Consensus size: 39
8071844 TAAAGGAGCC
** * * *
8071854 ATTTAAAGTTCATTGCCTCTGGTCAGAGGA-ACTTTTGA
1 ATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCCTTTTGA
* * * * * *
8071892 ATTTAAAGTTTGTTACATTTGGTTAAAAGAG-CTTTTGG
1 ATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCCTTTTGA
* * *
8071930 ATTTAAAGTTTGTTGCCTCTGGTGAGAGGAGCTTTTTAA
1 ATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCCTTTTGA
* *
8071969 CATTTAAAGTTTGTTGCCTCTGGTGAGAGAAGCCTTTTGA
1 -ATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCCTTTTGA
* * * *
8072009 ATTTAAAATTTGTTACCTCTGGTGAGAGAAGCCTTTTGA
1 ATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCCTTTTGA
* * *
8072048 ATTTAAAGTTTGTTGCCTTTGGTTAAATGAGCC------
1 ATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCCTTTTGA
* * *
8072081 ATTTAAAGTTCGTTGCCTCTGGTCAAATGAGCCTTTTGA
1 ATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCCTTTTGA
* * * * *
8072120 ATATAAAGTTTGTTGCCTTTAGTTAAATGAG-CTTTTGA
1 ATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCCTTTTGA
* * *
8072158 ATTTAAAGTTTATTACCTCTGGTGAAAGGAG-CTTTTGGC
1 ATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCCTTTT-GA
** * *
8072197 ATTTAAAGTTCATTGCCTCTGGTCAGAGGAGCCTTTTGA
1 ATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCCTTTTGA
* * * *
8072236 GTTTGAAGTTTGTTGCCTTTGGTTAAAGGAG-CTTTTGA
1 ATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCCTTTTGA
* * *
8072274 ATTTAAAGTTTGTTACCTTTGGTGAGAGGAGCCTTTTGA
1 ATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCCTTTTGA
** * * *
8072313 ATTTAAAGTTCATTACCTCTGGTCAAATGAGCCTTTTGA
1 ATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCCTTTTGA
8072352 ATTT
1 ATTT
8072356 GAAGCCTTTG
Statistics
Matches: 383, Mismatches: 69, Indels: 23
0.81 0.15 0.05
Matches are distributed among these distances:
33 30 0.08
38 122 0.32
39 190 0.50
40 41 0.11
ACGTcount: A:0.25, C:0.13, G:0.22, T:0.40
Consensus pattern (39 bp):
ATTTAAAGTTTGTTGCCTCTGGTGAAAGGAGCCTTTTGA
Found at i:8072109 original size:33 final size:33
Alignment explanation
Indices: 8072048--8072113 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
8072038 AGCCTTTTGA
* * *
8072048 ATTTAAAGTTTGTTGCCTTTGGTTAAATGAGCC
1 ATTTAAAGTTCGTTGCCTCTGGTCAAATGAGCC
8072081 ATTTAAAGTTCGTTGCCTCTGGTCAAATGAGCC
1 ATTTAAAGTTCGTTGCCTCTGGTCAAATGAGCC
8072114 TTTTGAATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38
Consensus pattern (33 bp):
ATTTAAAGTTCGTTGCCTCTGGTCAAATGAGCC
Found at i:8072179 original size:188 final size:189
Alignment explanation
Indices: 8071892--8072267 Score: 461
Period size: 188 Copynumber: 2.0 Consensus size: 189
8071882 GAACTTTTGA
* * * * * * *
8071892 ATTTAAAGTTTGTTACATTTGGTTAAAAGAGCTTTTGGATTTAAAGTTTGTTGCCTCTGGTGAGA
1 ATTTAAAGTTCGTTACATCTGGTCAAAAGAGCTTTTGAATATAAAGTTTGTTGCCTCTAGTGAAA
* * * **
8071957 GGAGCTTTTTAACATTTAAAGTTTGTTGCCTCTGGTGAGAGAAGCCTTTT-GAATTTAAAATTTG
66 GGAGCTTTTTAACATTTAAAGTTTATTACCTCTGGTGAAAGAAG-CTTTTGGAATTTAAAATTCA
* *
8072021 TTACCTCTGGTGAGAGAAGCCTTTTGAATTTAAAGTTTGTTGCCTTTGGTTAAATGAGCC
130 TTACCTCTGGTCAGAGAAGCCTTTTGAATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCC
* * * * *
8072081 ATTTAAAGTTCGTTGCCTCTGGTCAAATGAGCCTTTTGAATATAAAGTTTGTTGCCTTTAGTTAA
1 ATTTAAAGTTCGTTACATCTGGTCAAAAGAG-CTTTTGAATATAAAGTTTGTTGCCTCTAGTGAA
* * * * *
8072146 ATGAGC-TTTTGA-ATTTAAAGTTTATTACCTCTGGTGAAAGGAGCTTTTGGCATTTAAAGTTCA
65 AGGAGCTTTTTAACATTTAAAGTTTATTACCTCTGGTGAAAGAAGCTTTTGGAATTTAAAATTCA
* * * *
8072209 TTGCCTCTGGTCAGAGGAGCCTTTTGAGTTTGAAGTTTGTTGCCTTTGGTTAAAGGAGC
130 TTACCTCTGGTCAGAGAAGCCTTTTGAATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGC
8072268 TTTTGAATTT
Statistics
Matches: 157, Mismatches: 28, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
187 5 0.03
188 90 0.57
189 30 0.19
190 32 0.20
ACGTcount: A:0.25, C:0.12, G:0.23, T:0.40
Consensus pattern (189 bp):
ATTTAAAGTTCGTTACATCTGGTCAAAAGAGCTTTTGAATATAAAGTTTGTTGCCTCTAGTGAAA
GGAGCTTTTTAACATTTAAAGTTTATTACCTCTGGTGAAAGAAGCTTTTGGAATTTAAAATTCAT
TACCTCTGGTCAGAGAAGCCTTTTGAATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCC
Found at i:8072214 original size:116 final size:114
Alignment explanation
Indices: 8071853--8072393 Score: 577
Period size: 116 Copynumber: 4.8 Consensus size: 114
8071843 TTAAAGGAGC
* *
8071853 CATTTAAAGTTCATTGCCTCTGGTCAGAGGA-ACTTTTGAATTTAAAGTTTGTTACATTTGGTTA
1 CATTTAAAGTTCATTGCCTCTGGTCAGAGGAGCCTTTTGAATTTAAAGTTTGTTACCTTTGGTT-
* * * *
8071917 AAAGAGCTTTTGGATTTAAAGTTTGTTGCCTCTGGTGAGAGGAGCTTTTTAA
65 AAAGAGCTTTTGAATTTAAAGTTTGTTACCTCTGGTGAAAGGAGC-TTTT-G
** * * * * *
8071969 CATTTAAAGTTTGTTGCCTCTGGTGAGAGAAGCCTTTTGAATTTAAAATTTGTTACCTCTGGTGA
1 CATTTAAAGTTCATTGCCTCTGGTCAGAGGAGCCTTTTGAATTTAAAGTTTGTTACCTTTGGTTA
* * * * *
8072034 GAGAAGCCTTTTGAATTTAAAGTTTGTTGCCTTTGGTTAAATGAGC-----
66 AAG-AG-CTTTTGAATTTAAAGTTTGTTACCTCTGGTGAAAGGAGCTTTTG
* * * * * *
8072080 CATTTAAAGTTCGTTGCCTCTGGTCAAATGAGCCTTTTGAATATAAAGTTTGTTGCCTTTAGTTA
1 CATTTAAAGTTCATTGCCTCTGGTCAGAGGAGCCTTTTGAATTTAAAGTTTGTTACCTTTGGTTA
*
8072145 AATGAGCTTTTGAATTTAAAGTTTATTACCTCTGGTGAAAGGAGCTTTTGG
66 AA-GAGCTTTTGAATTTAAAGTTTGTTACCTCTGGTGAAAGGAGCTTTT-G
* * *
8072196 CATTTAAAGTTCATTGCCTCTGGTCAGAGGAGCCTTTTGAGTTTGAAGTTTGTTGCCTTTGGTTA
1 CATTTAAAGTTCATTGCCTCTGGTCAGAGGAGCCTTTTGAATTTAAAGTTTGTTACCTTTGGTTA
* *
8072261 AAGGAGCTTTTGAATTTAAAGTTTGTTACCTTTGGTGAGAGGAGCCTTTTG
66 AA-GAGCTTTTGAATTTAAAGTTTGTTACCTCTGGTGAAAGGAG-CTTTTG
* * * * *
8072312 AATTTAAAGTTCATTACCTCTGGTCAAATGAGCCTTTTGAATTTGAA----G---CCTTTGGTTA
1 CATTTAAAGTTCATTGCCTCTGGTCAGAGGAGCCTTTTGAATTTAAAGTTTGTTACCTTTGGTT-
*
8072370 AAAAAGCTTTTGAATTTAAAGTTT
65 AAAGAGCTTTTGAATTTAAAGTTT
8072394 ATAGCCTCTG
Statistics
Matches: 364, Mismatches: 49, Indels: 31
0.82 0.11 0.07
Matches are distributed among these distances:
109 29 0.08
110 37 0.10
111 57 0.16
112 2 0.01
116 171 0.47
117 34 0.09
118 34 0.09
ACGTcount: A:0.26, C:0.12, G:0.22, T:0.40
Consensus pattern (114 bp):
CATTTAAAGTTCATTGCCTCTGGTCAGAGGAGCCTTTTGAATTTAAAGTTTGTTACCTTTGGTTA
AAGAGCTTTTGAATTTAAAGTTTGTTACCTCTGGTGAAAGGAGCTTTTG
Done.