Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14313602
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 50000 characters in sequence are not A, C, G, or T
File 38 of 74
Found at i:8072215 original size:227 final size:227
Alignment explanation
Indices: 8071815--8072353 Score: 686
Period size: 227 Copynumber: 2.4 Consensus size: 227
8071805 TCTTCTCAAT
* ** *
8071815 TTTTTAATTTAAAGTTTGTTGCCTTCAGTTAAAGGAGCCATTTAAAGTTCATTGCCTCTGGTCAG
1 TTTTGAATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCCATTTAAAGTTCATTGCCTCTGGTCAA
* * * * * *
8071880 AGGA-ACTTTTGAATTTAAAGTTTGTTACATTTGGTTAAAAGAGCTTTTGGATTTAAAGTTTGTT
66 ATGAGCCTTTTGAATATAAAGTTTGTTACATTTAGTTAAAAGAGCTTTTGAATTTAAAGTTTATT
* * ** *
8071944 GCCTCTGGTGAGAGGAGCTTTTTAACATTTAAAGTTTGTTGCCTCTGGTGAGAGAAGCCTTTTGA
131 ACCTCTGGTGAAAGGAGCTTTTTAACATTTAAAGTTCATTGCCTCTGGTCAGAGAAGCCTTTTGA
*
8072009 ATTTAAAATTTGTTACCTCTGGTGAGAGAAGCC
196 ATTTAAAATTTGTTACCTCTGGTGAAAGAAG-C
* *
8072042 TTTTGAATTTAAAGTTTGTTGCCTTTGGTTAAATGAGCCATTTAAAGTTCGTTGCCTCTGGTCAA
1 TTTTGAATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCCATTTAAAGTTCATTGCCTCTGGTCAA
* * *
8072107 ATGAGCCTTTTGAATATAAAGTTTGTTGCCTTTAGTTAAATGAGCTTTTGAATTTAAAGTTTATT
66 ATGAGCCTTTTGAATATAAAGTTTGTTACATTTAGTTAAAAGAGCTTTTGAATTTAAAGTTTATT
** *
8072172 ACCTCTGGTGAAAGGAGC-TTTTGGCATTTAAAGTTCATTGCCTCTGGTCAGAGGAGCCTTTTGA
131 ACCTCTGGTGAAAGGAGCTTTTTAACATTTAAAGTTCATTGCCTCTGGTCAGAGAAGCCTTTTGA
* * * * * * *
8072236 GTTTGAAGTTTGTTGCCTTTGGTTAAAGGAGC
196 ATTTAAAATTTGTTACCTCTGGTGAAAGAAGC
* * * *
8072268 TTTTGAATTTAAAGTTTGTTACCTTTGGTGAGAGGAGCCTTTTGAATTTAAAGTTCATTACCTCT
1 TTTTGAATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCC------ATTTAAAGTTCATTGCCTCT
8072333 GGTCAAATGAGCCTTTTGAAT
60 GGTCAAATGAGCCTTTTGAAT
8072354 TTGAAGCCTT
Statistics
Matches: 268, Mismatches: 37, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
226 36 0.13
227 125 0.47
228 68 0.25
232 39 0.15
ACGTcount: A:0.25, C:0.13, G:0.22, T:0.40
Consensus pattern (227 bp):
TTTTGAATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCCATTTAAAGTTCATTGCCTCTGGTCAA
ATGAGCCTTTTGAATATAAAGTTTGTTACATTTAGTTAAAAGAGCTTTTGAATTTAAAGTTTATT
ACCTCTGGTGAAAGGAGCTTTTTAACATTTAAAGTTCATTGCCTCTGGTCAGAGAAGCCTTTTGA
ATTTAAAATTTGTTACCTCTGGTGAAAGAAGC
Found at i:8072592 original size:3 final size:3
Alignment explanation
Indices: 8072579--8072622 Score: 70
Period size: 3 Copynumber: 14.0 Consensus size: 3
8072569 TTTGTTCCTT
8072579 TTA TATA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTTA TTA
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
8072623 ATCTTTAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
3 33 0.85
4 6 0.15
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:8073513 original size:13 final size:14
Alignment explanation
Indices: 8073480--8073518 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
8073470 TTCTGATTTT
*
8073480 ATTTATTTTGTGTTG
1 ATTT-TTTTATGTTG
8073495 ATTTTTTTATGTTG
1 ATTTTTTTATGTTG
8073509 ATTTTTTTAT
1 ATTTTTTTAT
8073519 TTATTTCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 19 0.83
15 4 0.17
ACGTcount: A:0.15, C:0.00, G:0.13, T:0.72
Consensus pattern (14 bp):
ATTTTTTTATGTTG
Found at i:8078900 original size:22 final size:22
Alignment explanation
Indices: 8078872--8078921 Score: 100
Period size: 22 Copynumber: 2.3 Consensus size: 22
8078862 TGCAAAACCC
8078872 AACACTCAAACTCCAAAGCCTG
1 AACACTCAAACTCCAAAGCCTG
8078894 AACACTCAAACTCCAAAGCCTG
1 AACACTCAAACTCCAAAGCCTG
8078916 AACACT
1 AACACT
8078922 TTGAACTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.42, C:0.36, G:0.08, T:0.14
Consensus pattern (22 bp):
AACACTCAAACTCCAAAGCCTG
Found at i:8085239 original size:26 final size:25
Alignment explanation
Indices: 8085165--8085240 Score: 64
Period size: 26 Copynumber: 2.9 Consensus size: 25
8085155 ACCCAAAATT
* *
8085165 AATAAAATATTATTTTTTAAAATATA
1 AATAAAA-ATTAATTTTTAATATATA
* **
8085191 AATATATAATTATATAATT-ATATATA
1 AATA-AAAATTA-ATTTTTAATATATA
8085217 AATTAAAAATTAATTTTTAATATA
1 AA-TAAAAATTAATTTTTAATATA
8085241 ATGTCGGGTC
Statistics
Matches: 38, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
25 4 0.11
26 27 0.71
27 7 0.18
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (25 bp):
AATAAAAATTAATTTTTAATATATA
Found at i:8089292 original size:2 final size:2
Alignment explanation
Indices: 8089285--8089314 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
8089275 TAAAGATGCA
*
8089285 AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8089315 CATCTATCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8089618 original size:20 final size:20
Alignment explanation
Indices: 8089580--8089624 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
8089570 AATTAAATGA
**
8089580 ATTTTCTTTTTTATTATTAG
1 ATTTTCTTTTTTACAATTAG
8089600 ACTTTT-TTTTTTACAATTAG
1 A-TTTTCTTTTTTACAATTAG
8089620 ATTTT
1 ATTTT
8089625 GAAACGCTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 4 0.18
20 14 0.64
21 4 0.18
ACGTcount: A:0.22, C:0.07, G:0.04, T:0.67
Consensus pattern (20 bp):
ATTTTCTTTTTTACAATTAG
Found at i:8089739 original size:16 final size:16
Alignment explanation
Indices: 8089715--8089745 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8089705 ATTATTAATT
*
8089715 TTTTTATAAATTTTTA
1 TTTTAATAAATTTTTA
8089731 TTTTAATAAATTTTT
1 TTTTAATAAATTTTT
8089746 TTATAATTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTTAATAAATTTTTA
Found at i:8089752 original size:15 final size:16
Alignment explanation
Indices: 8089720--8089752 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8089710 TAATTTTTTT
*
8089720 ATAAATTTTTATTTTA
1 ATAAATTTTTATTATA
8089736 ATAAATTTTT-TTATA
1 ATAAATTTTTATTATA
8089751 AT
1 AT
8089753 TAGACTCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
ATAAATTTTTATTATA
Found at i:8093335 original size:3 final size:3
Alignment explanation
Indices: 8093327--8093360 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
8093317 TTTCATTCTC
8093327 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
8093361 ACTAATCATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:8094824 original size:41 final size:43
Alignment explanation
Indices: 8094763--8094907 Score: 109
Period size: 44 Copynumber: 3.4 Consensus size: 43
8094753 AGTAGATAAT
* * * * *
8094763 TGATAACTCAATAATTATTATTAAAAACTTAA-AAATAATCAG
1 TGATAACTTAATAGTAATTATCAAAAACTTAATAAATAATCAA
* **
8094805 T-ATAACTTAATAGTAATTATCAATAACTTAATAGTTAATCAA
1 TGATAACTTAATAGTAATTATCAAAAACTTAATAAATAATCAA
* * ** *
8094847 TGATAAATTAATAGTAAATCATGGATAACTTAATAGTAAT-AT-AA
1 TGATAACTTAATAGT-AATTATCAAAAACTTAATA--AATAATCAA
*
8094891 TGAAAACTTAATAGTAA
1 TGATAACTTAATAGTAA
8094908 ATGAATAATA
Statistics
Matches: 82, Mismatches: 16, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
41 25 0.30
42 9 0.11
43 14 0.17
44 31 0.38
45 2 0.02
46 1 0.01
ACGTcount: A:0.50, C:0.08, G:0.08, T:0.34
Consensus pattern (43 bp):
TGATAACTTAATAGTAATTATCAAAAACTTAATAAATAATCAA
Found at i:8094852 original size:22 final size:22
Alignment explanation
Indices: 8094806--8095350 Score: 200
Period size: 22 Copynumber: 25.2 Consensus size: 22
8094796 AATAATCAGT
8094806 ATAACTTAATAGTAATTATC-A--
1 ATAACTTAATAGTAA--ATCAATG
*
8094827 ATAACTTAATAGTTAATCAATG
1 ATAACTTAATAGTAAATCAATG
*
8094849 ATAAATTAATAGTAAATC-ATGG
1 ATAACTTAATAGTAAATCAAT-G
8094871 ATAACTTAATAGTAATAT-AATG
1 ATAACTTAATAGTAA-ATCAATG
* * *
8094893 AAAACTTAATAGTAAATGAATA
1 ATAACTTAATAGTAAATCAATG
* * *
8094915 ATAATTTAGTAGTTAAT-AATTG
1 ATAACTTAATAGTAAATCAA-TG
* * * * *
8094937 ATAACTTAGTAGCAAATTAGTA
1 ATAACTTAATAGTAAATCAATG
* * *
8094959 ATAATTTAATAGTAAATGAATT
1 ATAACTTAATAGTAAATCAATG
* *
8094981 ATAA-TTAGTAGTAAAAT-AATT
1 ATAACTTAATAGT-AAATCAATG
* *
8095002 ATAA-TATAGTTGTAAATCAATG
1 ATAACT-TAATAGTAAATCAATG
* **
8095024 ATAACTTATTAAAAAAT-AAGTG
1 ATAACTTAATAGTAAATCAA-TG
* * *
8095046 ATAACTTAATAGTTAATTATTG
1 ATAACTTAATAGTAAATCAATG
* * ** * *
8095068 AAAATTTTGTAATAAATCAATA
1 ATAACTTAATAGTAAATCAATG
* *
8095090 ATAATTTAATAGTAAATTAATG
1 ATAACTTAATAGTAAATCAATG
* * *
8095112 ATAATTTAATAGTAAATCAGTT
1 ATAACTTAATAGTAAATCAATG
* * * * *
8095134 TTGATTTAATAGT-AATTAGTG
1 ATAACTTAATAGTAAATCAATG
* * * *
8095155 --GA--TAGTAGTAAAT-TATAA
1 ATAACTTAATAGTAAATCAAT-G
* * *
8095173 ATAATTTAGTGGTAAGA-CAATG
1 ATAACTTAATAGTAA-ATCAATG
* *
8095195 ATAACTTAATTGTAAAT-AATTA
1 ATAACTTAATAGTAAATCAA-TG
* * * *
8095217 ATAATTTAGTAGTTAAT-AATTA
1 ATAACTTAATAGTAAATCAA-TG
* * * *
8095239 AAAACTTAAGAGTAAATTAGT-
1 ATAACTTAATAGTAAATCAATG
* * * *
8095260 ATAATTTAGTAGTAAGT-TATCG
1 ATAACTTAATAGTAAATCAAT-G
*
8095282 ATAACTTAATAGTTAATCAATG
1 ATAACTTAATAGTAAATCAATG
*
8095304 ATAATTTAATAGTAAATC-ATGG
1 ATAACTTAATAGTAAATCAAT-G
* *
8095326 ATAATTTAATA-TAAATCAGTG
1 ATAACTTAATAGTAAATCAATG
8095347 ATAA
1 ATAA
8095351 TTTGGTAGTG
Statistics
Matches: 400, Mismatches: 93, Indels: 62
0.72 0.17 0.11
Matches are distributed among these distances:
17 7 0.02
18 3 0.01
19 5 0.01
20 3 0.01
21 76 0.19
22 293 0.73
23 13 0.03
ACGTcount: A:0.47, C:0.04, G:0.11, T:0.37
Consensus pattern (22 bp):
ATAACTTAATAGTAAATCAATG
Found at i:8095024 original size:131 final size:132
Alignment explanation
Indices: 8094826--8095127 Score: 299
Period size: 131 Copynumber: 2.3 Consensus size: 132
8094816 AGTAATTATC
* * * * * * * *
8094826 AATAACTTAATAGTTAATCAATGATAAATTAATAGT-AAATCATGGATAACT-TAATAGTAATAT
1 AATAATTTAATAGTAAATGAATGATAATTTAATAGTAAAATAAT-TATAA-TATAGTTGTAA-AT
** * * * *
8094889 -AATGAAAACTTAATAGTAAATGAA-TAATAATTTAGTAGTTAATAATTGATAACTTAGTAGCAA
63 CAATGAAAACTTAATAAAAAAT-AAGTAATAACTTAATAGTTAATAATTGAAAACTTAGTAACAA
* *
8094952 ATTAGT
127 ATCAAT
* *
8094958 AATAATTTAATAGTAAATGAATTATAA-TTAGTAGTAAAATAATTATAATATAGTTGTAAATCAA
1 AATAATTTAATAGTAAATGAATGATAATTTAATAGTAAAATAATTATAATATAGTTGTAAATCAA
* * * * * * *
8095022 TGATAACTTATTAAAAAATAAGTGATAACTTAATAGTTAATTATTGAAAATTTTGTAATAAATCA
66 TGAAAACTTAATAAAAAATAAGTAATAACTTAATAGTTAATAATTGAAAACTTAGTAACAAATCA
8095087 AT
131 AT
*
8095089 AATAATTTAATAGTAAATTAATGATAATTTAATAGTAAA
1 AATAATTTAATAGTAAATGAATGATAATTTAATAGTAAA
8095128 TCAGTTTTGA
Statistics
Matches: 138, Mismatches: 27, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
130 5 0.04
131 94 0.68
132 39 0.28
ACGTcount: A:0.50, C:0.04, G:0.10, T:0.37
Consensus pattern (132 bp):
AATAATTTAATAGTAAATGAATGATAATTTAATAGTAAAATAATTATAATATAGTTGTAAATCAA
TGAAAACTTAATAAAAAATAAGTAATAACTTAATAGTTAATAATTGAAAACTTAGTAACAAATCA
AT
Found at i:8095093 original size:11 final size:11
Alignment explanation
Indices: 8095077--8095128 Score: 50
Period size: 11 Copynumber: 4.7 Consensus size: 11
8095067 GAAAATTTTG
*
8095077 TAATAAATCAA
1 TAATAAATTAA
*
8095088 TAATAATTTAA
1 TAATAAATTAA
*
8095099 TAGTAAATTAA
1 TAATAAATTAA
* *
8095110 TGATAATTTAA
1 TAATAAATTAA
*
8095121 TAGTAAAT
1 TAATAAAT
8095129 CAGTTTTGAT
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.54, C:0.02, G:0.06, T:0.38
Consensus pattern (11 bp):
TAATAAATTAA
Found at i:8095114 original size:66 final size:66
Alignment explanation
Indices: 8094826--8095124 Score: 239
Period size: 66 Copynumber: 4.5 Consensus size: 66
8094816 AGTAATTATC
* * * * * * * * *
8094826 AATAACTTAATAGTTAATCAATGATAAATTAATAGTAAATCATGGATAACTTAATAGTAATAT-A
1 AATAATTTAATAGTAAATGAATGATAATTTAATAGTTAATAATTGATAATTTAGTAGTAA-ATCA
8094890 AT
65 AT
* * * * * *
8094892 GAA-AACTTAATAGTAAATGAATAATAATTTAGTAGTTAATAATTGATAACTTAGTAGCAAATTA
1 -AATAATTTAATAGTAAATGAATGATAATTTAATAGTTAATAATTGATAATTTAGTAGTAAATCA
*
8094956 GT
65 AT
* * * * *
8094958 AATAATTTAATAGTAAATGAATTATAA-TTAGTAGTAAAATAATT-ATAATATAGTTGTAAATCA
1 AATAATTTAATAGTAAATGAATGATAATTTAATAGT-TAATAATTGATAATTTAGTAGTAAATCA
8095021 AT
65 AT
* * * ** * * * * *
8095023 GATAACTTATTAAAAAAT-AAGTGATAACTTAATAGTTAATTATTGAAAATTTTGTAATAAATCA
1 AATAATTTAATAGTAAATGAA-TGATAATTTAATAGTTAATAATTGATAATTTAGTAGTAAATCA
8095087 AT
65 AT
*
8095089 AATAATTTAATAGTAAATTAATGATAATTTAATAGT
1 AATAATTTAATAGTAAATGAATGATAATTTAATAGT
8095125 AAATCAGTTT
Statistics
Matches: 185, Mismatches: 40, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
64 2 0.01
65 51 0.28
66 128 0.69
67 4 0.02
ACGTcount: A:0.49, C:0.04, G:0.10, T:0.37
Consensus pattern (66 bp):
AATAATTTAATAGTAAATGAATGATAATTTAATAGTTAATAATTGATAATTTAGTAGTAAATCAA
T
Found at i:8095624 original size:22 final size:22
Alignment explanation
Indices: 8095596--8095724 Score: 75
Period size: 22 Copynumber: 5.9 Consensus size: 22
8095586 CATCGTAAAT
8095596 TAATAATTTAGTAATAAATTAC
1 TAATAATTTAGTAATAAATTAC
* *
8095618 TAATAATATAGTAGTATAA-TAC
1 TAATAATTTAGTAATA-AATTAC
* ** * *
8095640 TAGTAATTTAGTTGTAAATCAG
1 TAATAATTTAGTAATAAATTAC
* * * *
8095662 TTATAACTTTA-TAATTAATCAT
1 TAATAA-TTTAGTAATAAATTAC
* *
8095684 TAATAACTTAGTAGTAAATTA-
1 TAATAATTTAGTAATAAATTAC
* *
8095705 TCAACAATTTAATAATAAAT
1 T-AATAATTTAGTAATAAAT
8095725 CACTCTCAAC
Statistics
Matches: 80, Mismatches: 22, Indels: 10
0.71 0.20 0.09
Matches are distributed among these distances:
21 6 0.08
22 68 0.85
23 6 0.08
ACGTcount: A:0.47, C:0.06, G:0.07, T:0.40
Consensus pattern (22 bp):
TAATAATTTAGTAATAAATTAC
Found at i:8095738 original size:22 final size:22
Alignment explanation
Indices: 8095654--8095777 Score: 72
Period size: 22 Copynumber: 5.6 Consensus size: 22
8095644 AATTTAGTTG
* * *
8095654 TAAATCAGTTATAACTTTATAA
1 TAAATCACTCATAACTTAATAA
* * * * *
8095676 TTAATCATTAATAACTTAGTAG
1 TAAATCACTCATAACTTAATAA
* * *
8095698 TAAATTA-TCAACAATTTAATAA
1 TAAATCACTC-ATAACTTAATAA
*
8095720 TAAATCACTC-TCAACTTAATAG
1 TAAATCACTCAT-AACTTAATAA
* * *
8095742 TAAATAATTCATAACTTAACAA
1 TAAATCACTCATAACTTAATAA
*
8095764 TAAATCATTCATAA
1 TAAATCACTCATAA
8095778 ATTAGTAGTC
Statistics
Matches: 76, Mismatches: 22, Indels: 8
0.72 0.21 0.08
Matches are distributed among these distances:
21 1 0.01
22 72 0.95
23 3 0.04
ACGTcount: A:0.48, C:0.13, G:0.03, T:0.36
Consensus pattern (22 bp):
TAAATCACTCATAACTTAATAA
Found at i:8096040 original size:27 final size:27
Alignment explanation
Indices: 8095988--8096042 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
8095978 TTTATTCAAT
*** *
8095988 AAAAAAATTCTAAATTTTTTTTAAGTA
1 AAAAAAATTCTAAATTTAAATGAAGTA
8096015 AAAAAAATTCTAAATTTAAATGAAGTA
1 AAAAAAATTCTAAATTTAAATGAAGTA
8096042 A
1 A
8096043 TAATGTTATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.55, C:0.04, G:0.05, T:0.36
Consensus pattern (27 bp):
AAAAAAATTCTAAATTTAAATGAAGTA
Found at i:8096253 original size:22 final size:22
Alignment explanation
Indices: 8096228--8096277 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
8096218 ACATAGTAAT
*
8096228 AAATCAATGATAAATTAATAGC
1 AAATCAATGACAAATTAATAGC
* * * *
8096250 AAATTAGTGACAACTTAATAGT
1 AAATCAATGACAAATTAATAGC
8096272 AAATCA
1 AAATCA
8096278 GTTTCAGTTT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.52, C:0.10, G:0.10, T:0.28
Consensus pattern (22 bp):
AAATCAATGACAAATTAATAGC
Found at i:8096362 original size:22 final size:22
Alignment explanation
Indices: 8096341--8096460 Score: 131
Period size: 22 Copynumber: 5.5 Consensus size: 22
8096331 GTAACAAATT
*
8096341 AATGATAATTTAATAGTTAATT
1 AATGATAATTTAATAGTTAATC
* * *
8096363 ATTGA-AATCTTAAAAGTAAATC
1 AATGATAAT-TTAATAGTTAATC
*
8096385 ATTGATAATTTAATAGTTAATC
1 AATGATAATTTAATAGTTAATC
8096407 AATGATAATTTAATA-TTAAATC
1 AATGATAATTTAATAGTT-AATC
*
8096429 -ATGAATAATTTAATA-TAAATC
1 AATG-ATAATTTAATAGTTAATC
8096450 AATGATAATTT
1 AATGATAATTT
8096461 GGTAATGATG
Statistics
Matches: 85, Mismatches: 8, Indels: 11
0.82 0.08 0.11
Matches are distributed among these distances:
21 19 0.22
22 63 0.74
23 3 0.04
ACGTcount: A:0.47, C:0.04, G:0.07, T:0.41
Consensus pattern (22 bp):
AATGATAATTTAATAGTTAATC
Found at i:8096396 original size:44 final size:43
Alignment explanation
Indices: 8096342--8096460 Score: 152
Period size: 44 Copynumber: 2.7 Consensus size: 43
8096332 TAACAAATTA
* *
8096342 ATGATAATTTAATAGTTAATTATTGA-AATCTTAAAAGTAAATC
1 ATGATAATTTAATAGTTAATCAATGATAAT-TTAAAAGTAAATC
* *
8096385 ATTGATAATTTAATAGTTAATCAATGATAATTTAATATTAAATC
1 A-TGATAATTTAATAGTTAATCAATGATAATTTAAAAGTAAATC
*
8096429 ATGAATAATTTAATA-TAAATCAATGATAATTT
1 ATG-ATAATTTAATAGTTAATCAATGATAATTT
8096461 GGTAATGATG
Statistics
Matches: 68, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
43 19 0.28
44 46 0.68
45 3 0.04
ACGTcount: A:0.47, C:0.04, G:0.08, T:0.41
Consensus pattern (43 bp):
ATGATAATTTAATAGTTAATCAATGATAATTTAAAAGTAAATC
Found at i:8096625 original size:22 final size:22
Alignment explanation
Indices: 8096324--8096625 Score: 111
Period size: 22 Copynumber: 13.8 Consensus size: 22
8096314 AAATCATAAT
* * *
8096324 TAATTTAGTAACAAATTAATGA
1 TAATTTAATAATAAATTATTGA
* *
8096346 TAATTTAATAGTTAATTATTGA
1 TAATTTAATAATAAATTATTGA
*
8096368 -AATCTTAA-AAGTAAATCATTGA
1 TAAT-TTAATAA-TAAATTATTGA
* * * *
8096390 TAATTTAATAGTTAATCAATGA
1 TAATTTAATAATAAATTATTGA
* *
8096412 TAATTTAATATTAAATCA-TGAA
1 TAATTTAATAATAAATTATTG-A
* *
8096434 TAATTTAAT-ATAAATCAATGA
1 TAATTTAATAATAAATTATTGA
** * *
8096455 TAA-TT--TGGT-AATGATGGA
1 TAATTTAATAATAAATTATTGA
* * * *
8096473 TAAGTTAGTAACAAGTCTAATTTGTAA
1 TAATTTAATAATAAAT-T-A-TTG--A
* *
8096500 TAATTTTA-AATAAATAATTGA
1 TAATTTAATAATAAATTATTGA
* * *
8096521 AAATTAAATAATAAATTATTAA
1 TAATTTAATAATAAATTATTGA
* * * * *
8096543 TACTATACTAGTAAATGTA-TAA
1 TAATTTAATAATAAAT-TATTGA
* * **
8096565 TAATATAATAGTAAATCGTTGA
1 TAATTTAATAATAAATTATTGA
* *
8096587 TAATTTAGTAGTAAATTATTGA
1 TAATTTAATAATAAATTATTGA
8096609 TAATTTAATAATAAATT
1 TAATTTAATAATAAATT
8096626 GGCAATAACA
Statistics
Matches: 209, Mismatches: 52, Indels: 38
0.70 0.17 0.13
Matches are distributed among these distances:
18 10 0.05
19 3 0.01
20 2 0.01
21 24 0.11
22 146 0.70
23 9 0.04
24 2 0.01
25 2 0.01
26 5 0.02
27 6 0.03
ACGTcount: A:0.47, C:0.04, G:0.09, T:0.40
Consensus pattern (22 bp):
TAATTTAATAATAAATTATTGA
Found at i:8096666 original size:22 final size:22
Alignment explanation
Indices: 8096532--8096692 Score: 92
Period size: 22 Copynumber: 7.3 Consensus size: 22
8096522 AATTAAATAA
* * * *
8096532 TAAATTATTAATACTATACTAG
1 TAAATTACTAATAATTTAGTAG
* *
8096554 TAAATGTA-TAATAATATAATAG
1 TAAAT-TACTAATAATTTAGTAG
*** *
8096576 TAAATCGTTGATAATTTAGTAG
1 TAAATTACTAATAATTTAGTAG
* * * *
8096598 TAAATTATTGATAATTTAATAA
1 TAAATTACTAATAATTTAGTAG
* ** *
8096620 TAAATTGGC-AATAACATGGTAG
1 TAAATT-ACTAATAATTTAGTAG
*
8096642 TAAATTACTAATAATTTAGTTG
1 TAAATTACTAATAATTTAGTAG
* * *
8096664 TAAATCAGTAATATTTTAGTAG
1 TAAATTACTAATAATTTAGTAG
8096686 TAAATTA
1 TAAATTA
8096693 ATTAATCATT
Statistics
Matches: 106, Mismatches: 29, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
21 1 0.01
22 103 0.97
23 2 0.02
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.40
Consensus pattern (22 bp):
TAAATTACTAATAATTTAGTAG
Found at i:8096772 original size:11 final size:11
Alignment explanation
Indices: 8096756--8096859 Score: 73
Period size: 11 Copynumber: 9.5 Consensus size: 11
8096746 TATACCTTTA
8096756 TAATAAATTAT
1 TAATAAATTAT
* *
8096767 TAATAACTTAG
1 TAATAAATTAT
*
8096778 TAATAAATCAT
1 TAATAAATTAT
* * *
8096789 CAATAATTTAG
1 TAATAAATTAT
*
8096800 TAATAAATCAT
1 TAATAAATTAT
* * *
8096811 TTATAATTTAA
1 TAATAAATTAT
*
8096822 TAATAAATCAT
1 TAATAAATTAT
* * *
8096833 TGATAATTTAA
1 TAATAAATTAT
*
8096844 TAATAAATCAT
1 TAATAAATTAT
8096855 TAATA
1 TAATA
8096860 GCTTAATAGT
Statistics
Matches: 64, Mismatches: 29, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
11 64 1.00
ACGTcount: A:0.51, C:0.06, G:0.03, T:0.40
Consensus pattern (11 bp):
TAATAAATTAT
Found at i:8096781 original size:22 final size:22
Alignment explanation
Indices: 8096755--8096909 Score: 152
Period size: 22 Copynumber: 7.0 Consensus size: 22
8096745 TTATACCTTT
*
8096755 ATAATAAATTATTAATAACTTA
1 ATAATAAATCATTAATAACTTA
* * *
8096777 GTAATAAATCATCAATAATTTA
1 ATAATAAATCATTAATAACTTA
* * *
8096799 GTAATAAATCATTTATAATTTA
1 ATAATAAATCATTAATAACTTA
* *
8096821 ATAATAAATCATTGATAATTTA
1 ATAATAAATCATTAATAACTTA
*
8096843 ATAATAAATCATTAATAGCTTA
1 ATAATAAATCATTAATAACTTA
* *
8096865 ATAGTAAATCACTAATAA--TA
1 ATAATAAATCATTAATAACTTA
* *
8096885 ATGTAGTAAATCAATAATAACTTA
1 A--TAATAAATCATTAATAACTTA
8096909 A
1 A
8096910 ATTTTCAATT
Statistics
Matches: 114, Mismatches: 15, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
20 3 0.03
22 108 0.95
24 3 0.03
ACGTcount: A:0.51, C:0.07, G:0.05, T:0.37
Consensus pattern (22 bp):
ATAATAAATCATTAATAACTTA
Found at i:8096800 original size:66 final size:65
Alignment explanation
Indices: 8096691--8096859 Score: 171
Period size: 66 Copynumber: 2.6 Consensus size: 65
8096681 AGTAGTAAAT
* * * * * * *
8096691 TAATTAATCATTAATAACTTTGT-ATTAATCATTGATCAATTAGTAGCAAATTAGTTATACCTTT
1 TAATAAATCATTAATAACTTAGTAATAAATCATTAAT-AATTAGTAACAAATCAGTTATA-ATTT
8096755 -A
64 AA
* * * *
8096756 TAATAAATTATTAATAACTTAGTAATAAATCATCAATAATTTAGTAATAAATCATTTATAATTTA
1 TAATAAATCATTAATAACTTAGTAATAAATCATTAATAA-TTAGTAACAAATCAGTTATAATTTA
8096821 A
65 A
* * *
8096822 TAATAAATCATTGATAATTTAATAATAAATCATTAATA
1 TAATAAATCATTAATAACTTAGTAATAAATCATTAATA
8096860 GCTTAATAGT
Statistics
Matches: 85, Mismatches: 16, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
65 25 0.29
66 60 0.71
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.41
Consensus pattern (65 bp):
TAATAAATCATTAATAACTTAGTAATAAATCATTAATAATTAGTAACAAATCAGTTATAATTTAA
Found at i:8097208 original size:21 final size:21
Alignment explanation
Indices: 8097184--8097229 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
8097174 AATAATTATA
*
8097184 AAAAATATATTATAA-ATTACC
1 AAAAATATATGA-AAGATTACC
*
8097205 AAAATTATATGAAAGATTACC
1 AAAAATATATGAAAGATTACC
8097226 AAAA
1 AAAA
8097230 TTACATTAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 2 0.09
21 20 0.91
ACGTcount: A:0.59, C:0.09, G:0.04, T:0.28
Consensus pattern (21 bp):
AAAAATATATGAAAGATTACC
Found at i:8097230 original size:21 final size:21
Alignment explanation
Indices: 8097199--8097280 Score: 74
Period size: 21 Copynumber: 3.9 Consensus size: 21
8097189 TATATTATAA
*
8097199 ATTACCAAAATTATATGAAAG
1 ATTACCAAAATTATATCAAAG
* *
8097220 ATTACCAAAATTACATTAAGAG
1 ATTACCAAAATTATATCAA-AG
** * *
8097242 GCTATCAAAATTTTATCAAAG
1 ATTACCAAAATTATATCAAAG
* *
8097263 ATTATCAAAATTGTATCA
1 ATTACCAAAATTATATCA
8097281 GTGGGTACAA
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
21 34 0.69
22 15 0.31
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.32
Consensus pattern (21 bp):
ATTACCAAAATTATATCAAAG
Found at i:8097413 original size:17 final size:16
Alignment explanation
Indices: 8097380--8097412 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8097370 ATGGAAGCAT
8097380 ATAAAATATTATTAAA
1 ATAAAATATTATTAAA
8097396 ATAAAA-ATTATATAAA
1 ATAAAATATTAT-TAAA
8097412 A
1 A
8097413 AAGTTATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
ATAAAATATTATTAAA
Found at i:8097554 original size:2 final size:2
Alignment explanation
Indices: 8097549--8097583 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
8097539 TCAGAACTAG
*
8097549 TA TA TA TA TA TA TA TA TA CA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8097584 CAATATTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:8097589 original size:8 final size:9
Alignment explanation
Indices: 8097550--8097589 Score: 50
Period size: 8 Copynumber: 4.7 Consensus size: 9
8097540 CAGAACTAGT
8097550 ATATATAT-
1 ATATATATC
8097558 ATATATATAC
1 ATATATAT-C
8097568 ATATATAT-
1 ATATATATC
8097576 ATATATATC
1 ATATATATC
8097585 A-ATAT
1 ATATAT
8097590 TATTGGTGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
8 20 0.69
9 1 0.03
10 8 0.28
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (9 bp):
ATATATATC
Found at i:8107684 original size:20 final size:19
Alignment explanation
Indices: 8107659--8107698 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
8107649 GAGCATATGA
8107659 CAGAGA-AGATGAGGAAGAGC
1 CAGAGACAGA-GA-GAAGAGC
8107679 CAGAGACAGAGAGAAGAGC
1 CAGAGACAGAGAGAAGAGC
8107698 C
1 C
8107699 CATATGAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.42
20 8 0.42
21 3 0.16
ACGTcount: A:0.45, C:0.15, G:0.38, T:0.03
Consensus pattern (19 bp):
CAGAGACAGAGAGAAGAGC
Found at i:8110457 original size:82 final size:82
Alignment explanation
Indices: 8110320--8110487 Score: 309
Period size: 82 Copynumber: 2.0 Consensus size: 82
8110310 TTCTAATTTG
* *
8110320 CAGCAATAACTAATTTCAAACAAAATAAGATACAGAGACAGAGAAATATGCATCTTACTGGCTGC
1 CAGCAATAACTAATTTCAAACAAAATAAGACACAGAGACAGAGAAATATGCATCTTACTAGCTGC
8110385 CAACCTAGCATAATCAC
66 CAACCTAGCATAATCAC
*
8110402 CAGCAATAACTAATTTCAAACAAAATAGGACACAGAGACAGAGAAATATGCATCTTACTAGCTGC
1 CAGCAATAACTAATTTCAAACAAAATAAGACACAGAGACAGAGAAATATGCATCTTACTAGCTGC
8110467 CAACCTAGCATAATCAC
66 CAACCTAGCATAATCAC
8110484 CAGC
1 CAGC
8110488 TGTAGCAGTG
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
82 83 1.00
ACGTcount: A:0.43, C:0.23, G:0.14, T:0.20
Consensus pattern (82 bp):
CAGCAATAACTAATTTCAAACAAAATAAGACACAGAGACAGAGAAATATGCATCTTACTAGCTGC
CAACCTAGCATAATCAC
Found at i:8114431 original size:14 final size:14
Alignment explanation
Indices: 8114414--8114468 Score: 53
Period size: 16 Copynumber: 3.9 Consensus size: 14
8114404 ATATTTTTAA
8114414 AATTATTTAAATAT
1 AATTATTTAAATAT
8114428 AATTTTATTTAAATAT
1 AA--TTATTTAAATAT
8114444 --TTGATTTAAA-AT
1 AATT-ATTTAAATAT
8114456 ATATTATTTAAAT
1 A-ATTATTTAAAT
8114469 TTAACATAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 13
0.72 0.00 0.28
Matches are distributed among these distances:
12 4 0.12
13 7 0.21
14 9 0.26
15 2 0.06
16 12 0.35
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (14 bp):
AATTATTTAAATAT
Found at i:8114467 original size:27 final size:26
Alignment explanation
Indices: 8114403--8114468 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 26
8114393 GATTTATTAG
8114403 TATATT-TTTAAA-ATTATTTAAATA
1 TATATTATTTAAATATTATTTAAATA
*
8114427 TAATTTTATTTAAATATTTGATTTAAA-A
1 T-ATATTATTTAAATA-TT-ATTTAAATA
8114455 TATATTATTTAAAT
1 TATATTATTTAAAT
8114469 TTAACATAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
24 1 0.03
25 4 0.11
26 6 0.17
27 13 0.37
28 4 0.11
29 7 0.20
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (26 bp):
TATATTATTTAAATATTATTTAAATA
Found at i:8114810 original size:71 final size:69
Alignment explanation
Indices: 8114735--8114876 Score: 232
Period size: 71 Copynumber: 2.0 Consensus size: 69
8114725 TTAAAAATTA
8114735 TATTTACAATAATAATTTTTAAAACATTAT-AAAATTTTTTTAATATATGTTAAATATATTTTTC
1 TATTTACAATAATAATTTTTAAAACATTATGAAAA--TTTTTAATATATGTTAAATATATTTTT-
*
8114799 AATGTAT
63 AATCTAT
*
8114806 TATTTACAATAATAATTTTTAAAACATTATGAAAATTTTTAATATATGTTAAGTATATTTTTAAT
1 TATTTACAATAATAATTTTTAAAACATTATGAAAATTTTTAATATATGTTAAATATATTTTTAAT
8114871 CTAT
66 CTAT
8114875 TA
1 TA
8114877 AAATTAAATT
Statistics
Matches: 68, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
69 8 0.12
70 26 0.38
71 30 0.44
72 4 0.06
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (69 bp):
TATTTACAATAATAATTTTTAAAACATTATGAAAATTTTTAATATATGTTAAATATATTTTTAAT
CTAT
Found at i:8119598 original size:546 final size:545
Alignment explanation
Indices: 8115995--8121980 Score: 11360
Period size: 545 Copynumber: 11.0 Consensus size: 545
8115985 AGAACAAAGG
8115995 TTGGTGATTTGGTGAAAAAGCTAGTTTATCATAAATAGATTTGGATTTAAATTGCTGAAGATAAA
1 TTGGTGATTTGGTGAAAAAGCTAGTTTATCATAAATAGATTTGGATTTAAATTGCTGAAGATAAA
*
8116060 TATTAAATTTTTTTATGATAATATGAAAGTTTTCTAAAGATGGAGTCATATTTGATCTGAAAATT
66 TATTAAATTTTTTTATGATAATATGAAAGTTTTCTAAAGATGGAGTCATATTTGATCTGAAACTT
* *
8116125 TGTTGATTTTTTCCTATAAATAAACCTTTAATTCATTTCCAAGAAGAGACAAGAATCACACACGA
131 TGTTGATTTTTCCCTATAAATGAACCTTTAATTCATTTCCAAGAAGAGACAAGAATCACACACGA
8116190 TAAAAGAGAGCAATGCATAATAAAAATGGAGAGAGTAATTAGTGGGAAAGAGCAAGAAACAATCG
196 TAAAAGAGAGCAATGCATAATAAAAATGGAGAGAGTAATTAGTGGGAAAGAGCAAGAAACAATCG
8116255 GTCTGGCAATAGGTTTTATTTGAAATTTGGTTAGTTTGTTAAGATGTTTGATTTAGTTCAAATTA
261 GTCTGGCAATAGGTTTTATTTGAAATTTGGTTAGTTTGTTAAGATGTTTGATTTAGTTCAAATTA
8116320 GAGAAATCAAGGTTATCAAAGAATTTAGAAAGCTAAAAAAAATCATATTAGGATTTCTAGCATTT
326 GAGAAATCAAGGTTATCAAAGAATTTAGAAAGCTAAAAAAAATCATATTAGGATTTCTAGCATTT
8116385 TTCCATTTTTTTAAATTTTTGTGAAAATTTTTAAAAATTTCAGAATCCGACGTACCTTTGGTGGC
391 TTCCATTTTTTTAAATTTTTGTGAAAATTTTTAAAAATTTCAGAATCCGACGTACCTTTGGTGGC
8116450 CATTTCCCAATTCCCAACAACAAACCAAAAAACAAACAACCTTTGTTGGTGATGTTGAAAACCTT
456 CATTTCCCAATTCCCAACAACAAACCAAAAAACAAACAACCTTTGTTGGTGATGTTGAAAACCTT
8116515 GACAGTAATATTTGCAAAAGCTAGT
521 GACAGTAATATTTGCAAAAGCTAGT
8116540 TTGGTGATTTGGTGAAAAAGCTAGTTTATCATAAATAGATTTGGATTTAAATTGCTGAAGATAAA
1 TTGGTGATTTGGTGAAAAAGCTAGTTTATCATAAATAGATTTGGATTTAAATTGCTGAAGATAAA
*
8116605 TATTAAATTTTTTTATGATAATATGAAAGTTTTCTAAAGATGGAGTCACATTTGATCTGAAACTT
66 TATTAAATTTTTTTATGATAATATGAAAGTTTTCTAAAGATGGAGTCATATTTGATCTGAAACTT
8116670 TGTTGATTTTTCCCTATAAATGAACCTTTAATTCATTTCCAAGAAGAGACAAGAATCACACACGA
131 TGTTGATTTTTCCCTATAAATGAACCTTTAATTCATTTCCAAGAAGAGACAAGAATCACACACGA
8116735 TAAAAGAGAGCAATGCATAATAAAAATGGAGAGAGTAATTAGTGGGAAAGAGCAAGAAACAATCG
196 TAAAAGAGAGCAATGCATAATAAAAATGGAGAGAGTAATTAGTGGGAAAGAGCAAGAAACAATCG
8116800 GTCTGGCAATAGGTTTTATTTGAAATTTGGTTAGTTTGTTAAGATGTTTGATTTAGTTCAAATTA
261 GTCTGGCAATAGGTTTTATTTGAAATTTGGTTAGTTTGTTAAGATGTTTGATTTAGTTCAAATTA
*
8116865 GAGAAATCAAGGTTATCAAAAAATTTAGAAAGCTAAAAAAAATCATATTAGGATTTCTAGCATTT
326 GAGAAATCAAGGTTATCAAAGAATTTAGAAAGCTAAAAAAAATCATATTAGGATTTCTAGCATTT
*
8116930 TTCCATTTTTTTAAATTTTTGTGAAAAATTTTAAAAATTTCAGAATCCGACGTACCTTTGGTGGC
391 TTCCATTTTTTTAAATTTTTGTGAAAATTTTTAAAAATTTCAGAATCCGACGTACCTTTGGTGGC
8116995 CATTTCCCAATTCCCAACAACAAACCAAAAAACAAACAACCTTTGTTGGTGATGTTGAAAACCTT
456 CATTTCCCAATTCCCAACAACAAACCAAAAAACAAACAACCTTTGTTGGTGATGTTGAAAACCTT
8117060 GACAGTAATATTTGCAAAAGCTAGT
521 GACAGTAATATTTGCAAAAGCTAGT
8117085 TTGGTGATTTGGTGAAAAAGCTAGTTTATCATAAATAGATTTGGATTTAAATTGCTGAAGATAAA
1 TTGGTGATTTGGTGAAAAAGCTAGTTTATCATAAATAGATTTGGATTTAAATTGCTGAAGATAAA
**
8117150 TATTAAATTTTTTTATGATAGCATGAAAGTTTTCTAAAGATGGAGTCATATTTGATCTGAAACTT
66 TATTAAATTTTTTTATGATAATATGAAAGTTTTCTAAAGATGGAGTCATATTTGATCTGAAACTT
*
8117215 TGTTGATTTTTCCCTATAAATGAACCTTTAATTCATTTCCAAGAAGAGACAAGAATCACACAAGA
131 TGTTGATTTTTCCCTATAAATGAACCTTTAATTCATTTCCAAGAAGAGACAAGAATCACACACGA
*
8117280 TAAAAGAGAGTAATGCATAATAAAAATGGAGAGAGTAATTAGTGGGAAAGAGCAAGAAACAATCG
196 TAAAAGAGAGCAATGCATAATAAAAATGGAGAGAGTAATTAGTGGGAAAGAGCAAGAAACAATCG
8117345 GTCTGGCAATAGGTTTTATTTGAAATTTGGTTAGTTTGTTAAGATGTTTGATTTAGTTCAAATTA
261 GTCTGGCAATAGGTTTTATTTGAAATTTGGTTAGTTTGTTAAGATGTTTGATTTAGTTCAAATTA
*
8117410 GAAAAATCAAGGTTATCAAAGAATTTAGAAAGCTAAAAAAAATCATATTAGGATTTCTAGCATTT
326 GAGAAATCAAGGTTATCAAAGAATTTAGAAAGCTAAAAAAAATCATATTAGGATTTCTAGCATTT
*
8117475 TTCCATTTTTATAAATTTTTGTGAAAATTTTTAAAAATTTCAGAATCCGACGTACCTTTGGTGGC
391 TTCCATTTTTTTAAATTTTTGTGAAAATTTTTAAAAATTTCAGAATCCGACGTACCTTTGGTGGC
*
8117540 CATTTCACAATTCCCAACAACAAACCAAAAAACAAACAACCTTTGTTGGTGATGTTGAAAACCTT
456 CATTTCCCAATTCCCAACAACAAACCAAAAAACAAACAACCTTTGTTGGTGATGTTGAAAACCTT
*
8117605 GATAGTAATATTTGCAAAAGCTAGT
521 GACAGTAATATTTGCAAAAGCTAGT
8117630 TTGGTGATTTGGTGAAAAAGCTAGTTTATCATAAATAGATTTGGATTTAAATTGCTGAAGATAAA
1 TTGGTGATTTGGTGAAAAAGCTAGTTTATCATAAATAGATTTGGATTTAAATTGCTGAAGATAAA
*
8117695 TATTAAATTTTTTTATGATAATTTGAAAGTTTTCTAAAGATGGAGTCATATTTGATCTGAAACTT
66 TATTAAATTTTTTTATGATAATATGAAAGTTTTCTAAAGATGGAGTCATATTTGATCTGAAACTT
8117760 TGTTGATTTTTCCCTATAAATGAACCTTTAATTCATTTCCAAGAAGAGACAAGAATCACACACGA
131 TGTTGATTTTTCCCTATAAATGAACCTTTAATTCATTTCCAAGAAGAGACAAGAATCACACACGA
8117825 TAAAAGAGAGCAATGCATAATAAAAATGGAGAGAGTAATTAGTGGGAAAGAGCAAGAAACAATCG
196 TAAAAGAGAGCAATGCATAATAAAAATGGAGAGAGTAATTAGTGGGAAAGAGCAAGAAACAATCG
8117890 GTCTGGCAATAGGTTTTATTTGAAATTTGGTTAGTTTGTTAAGATGTTTGATTTAGTTCAAATTA
261 GTCTGGCAATAGGTTTTATTTGAAATTTGGTTAGTTTGTTAAGATGTTTGATTTAGTTCAAATTA
*
8117955 AAGAAATCAAGGTTATCAAAGAATTTAGAAAGCT-AAAAAAATCATATTAGGATTTCTAGCATTT
326 GAGAAATCAAGGTTATCAAAGAATTTAGAAAGCTAAAAAAAATCATATTAGGATTTCTAGCATTT
8118019 TTCCATTTTTTTAAATTTTTGTGAAAATTTTTAAAAATTTCAGAATCCGACGTACCTTTGGTGGC
391 TTCCATTTTTTTAAATTTTTGTGAAAATTTTTAAAAATTTCAGAATCCGACGTACCTTTGGTGGC
*
8118084 CATTTCCCAATTCCCAACAACAAACTAAAAAACAAACAACCTTTGTTGGTGATGTTGAAAACCTT
456 CATTTCCCAATTCCCAACAACAAACCAAAAAACAAACAACCTTTGTTGGTGATGTTGAAAACCTT
8118149 GACAGTAATATTTGCAAAAGCTAGT
521 GACAGTAATATTTGCAAAAGCTAGT
8118174 TTGGTGATTTGGTGAAAAAGCTAGTTTATCATAAATAGATTTGGATTTAAATTGCTGAAGATAAA
1 TTGGTGATTTGGTGAAAAAGCTAGTTTATCATAAATAGATTTGGATTTAAATTGCTGAAGATAAA
**
8118239 TATTAAATTTTTTTATGATAGCATGAAAGTTTTCTAAAGATGGAGTCATATTTGATCTGAAACTT
66 TATTAAATTTTTTTATGATAATATGAAAGTTTTCTAAAGATGGAGTCATATTTGATCTGAAACTT
8118304 TGTTGA-TTTTCCCTATAAATGAACCTTTAATTCATTTCCAAGAAGAGACAAGAATCACACACGA
131 TGTTGATTTTTCCCTATAAATGAACCTTTAATTCATTTCCAAGAAGAGACAAGAATCACACACGA
8118368 TAAAAGAGAGCAATGCATAATAAAAATGGAGAGAGTAATTAGTGGGAAAGAGCAAGAAACAATCG
196 TAAAAGAGAGCAATGCATAATAAAAATGGAGAGAGTAATTAGTGGGAAAGAGCAAGAAACAATCG
*
8118433 GTCTGGCAATAGGTTTTATTTGAAATTTGGTTAGTTTGTTAAGATGTTTAATTTAGTTCAAATTA
261 GTCTGGCAATAGGTTTTATTTGAAATTTGGTTAGTTTGTTAAGATGTTTGATTTAGTTCAAATTA
8118498 GAGAAATCAAGGTTATCAAAGAATTTAGAAAGCTAAAAAAAATCATATTAGGATTTCTAGCATTT
326 GAGAAATCAAGGTTATCAAAGAATTTAGAAAGCTAAAAAAAATCATATTAGGATTTCTAGCATTT
*
8118563 TTCCATTTTTTTAAATTTTTGTGAAAAATTTTAAAAATTTCAGAATCCGACGTACCTTTGGTGGC
391 TTCCATTTTTTTAAATTTTTGTGAAAATTTTTAAAAATTTCAGAATCCGACGTACCTTTGGTGGC
8118628 CATTTCCCAATTCCCAACAACAAACCAAAAAACAAACAACCTTTGTTGGTGATGTTGAAAACCTT
456 CATTTCCCAATTCCCAACAACAAACCAAAAAACAAACAACCTTTGTTGGTGATGTTGAAAACCTT
8118693 GACAGTAATATTTGCAAAAGCTAGT
521 GACAGTAATATTTGCAAAAGCTAGT
8118718 TTGGTGATTTGGTGAAAAAGCTAGTTTATCATAAATAGATTTGGATTTAAATTGCTGAAGATAAA
1 TTGGTGATTTGGTGAAAAAGCTAGTTTATCATAAATAGATTTGGATTTAAATTGCTGAAGATAAA
*
8118783 TATTAAATTTTTTTATGATAACATGAAAGTTTTCTAAAGATGGAGTCATATTTGATCTGAAACTT
66 TATTAAATTTTTTTATGATAATATGAAAGTTTTCTAAAGATGGAGTCATATTTGATCTGAAACTT
*
8118848 TGTTGATTTTTCCCTATAAATGAACCTTTAATTCATTTCCAAGAAGAGACAAGAATCACACAAGA
131 TGTTGATTTTTCCCTATAAATGAACCTTTAATTCATTTCCAAGAAGAGACAAGAATCACACACGA
*
8118913 TAAAAGAGAGTAATGCATAATAAAAATGGAGAGAGTAATTAGTGGGAAAGAGCAAGAAACAATCG
196 TAAAAGAGAGCAATGCATAATAAAAATGGAGAGAGTAATTAGTGGGAAAGAGCAAGAAACAATCG
8118978 GTCTGGCAATAGGTTTTATTTGAAATTTGGTTAGTTTGTTAAGATGTTTGATTTAGTTCAAATTA
261 GTCTGGCAATAGGTTTTATTTGAAATTTGGTTAGTTTGTTAAGATGTTTGATTTAGTTCAAATTA
*
8119043 GAAAAATCAAGGTTATCAAAGAATTTAGAAAGCTAAAAAAAATCATATTAGGATTTCTAGCATTT
326 GAGAAATCAAGGTTATCAAAGAATTTAGAAAGCTAAAAAAAATCATATTAGGATTTCTAGCATTT
*
8119108 TTCCATTTTTTTAAATTTTTGTGAAAATTTTTAAAAAATTCAGAATCCGACGTACCTTTGGTGGC
391 TTCCATTTTTTTAAATTTTTGTGAAAATTTTTAAAAATTTCAGAATCCGACGTACCTTTGGTGGC
8119173 CATTTCCCAATTCCCAACAACAAACCAAAAAACAAACAACCTTTGTTGGTGATGTTGAAAACCTT
456 CATTTCCCAATTCCCAACAACAAACCAAAAAACAAACAACCTTTGTTGGTGATGTTGAAAACCTT
*
8119238 GATAGTAATATTTGCAAAAGCTAGT
521 GACAGTAATATTTGCAAAAGCTAGT
8119263 TTGGTGATTTGGTGAAAAAGCTAGTTTATCATAAATAGATTTGGATTTAAATTGCTGAAGATAAA
1 TTGGTGATTTGGTGAAAAAGCTAGTTTATCATAAATAGATTTGGATTTAAATTGCTGAAGATAAA
*
8119328 TATTAAATTTTTTTATGATAATTTGAAAGTTTTCTAAAGATGGAGTCATATTTGATCTGAAACTT
66 TATTAAATTTTTTTATGATAATATGAAAGTTTTCTAAAGATGGAGTCATATTTGATCTGAAACTT
8119393 TGTTGATTTTTCCCTATAAATGAACCTTTAATTCATTTCCAAGAAGAGACAAGAATCACACACGA
131 TGTTGATTTTTCCCTATAAATGAACCTTTAATTCATTTCCAAGAAGAGACAAGAATCACACACGA
8119458 TAAAAGAGAGCAAATGCATAATAAAAATGGAGAGAGTAATTAGTGGGAAAGAGCAAGAAACAATC
196 TAAAAGAGAGC-AATGCATAATAAAAATGGAGAGAGTAATTAGTGGGAAAGAGCAAGAAACAATC
8119523 GGTCTGGCAATAGGTTTTATTTGAAATTTGGTTAGTTTGTTAAGATGTTTGATTTAGTTCAAATT
260 GGTCTGGCAATAGGTTTTATTTGAAATTTGGTTAGTTTGTTAAGATGTTTGATTTAGTTCAAATT
*
8119588 AAAGAAATCAAGGTTATC-AAGAATTTAGAAAGCT-AAAAAAATCATATTAGGATTTCTAGCATT
325 AGAGAAATCAAGGTTATCAAAGAATTTAGAAAGCTAAAAAAAATCATATTAGGATTTCTAGCATT
*
8119651 TTTCCATTTTTTTAAATTTTTGTGAAAATTTTTAAAAATTTCAGAATTCGACGTA-CTTTGGTGG
390 TTTCCATTTTTTTAAATTTTTGTGAAAATTTTTAAAAATTTCAGAATCCGACGTACCTTTGGTGG
8119715 CCATTTCCCAATTCCCAACAACAAACCAAAAAACAAACAACCTTTGTTGGTGATGTTGAAAACCT
455 CCATTTCCCAATTCCCAACAACAAACCAAAAAACAAACAACCTTTGTTGGTGATGTTGAAAACCT
8119780 TGACAGTAATATTTGCAAAAGCTAGT
520 TGACAGTAATATTTGCAAAAGCTAGT
8119806 TTGGTGATTTGGTGAAAAAGCTAGTTTATCATAAATAGATTTGGATTTAAATTGCTGAAGATAAA
1 TTGGTGATTTGGTGAAAAAGCTAGTTTATCATAAATAGATTTGGATTTAAATTGCTGAAGATAAA
8119871 TATTAAATTTTTTTATGATAATATGAAAGTTTTCTAAAGATGGAGTCATATTTGATCTGAAACTT
66 TATTAAATTTTTTTATGATAATATGAAAGTTTTCTAAAGATGGAGTCATATTTGATCTGAAACTT
8119936 TGTTGATTTTTCCCTATAAATGAACCTTTAATTCATTTCCAAGAAGAGACAAGAATCACACACGA
131 TGTTGATTTTTCCCTATAAATGAACCTTTAATTCATTTCCAAGAAGAGACAAGAATCACACACGA
*
8120001 T-AAA-AGAG-AATGCATAATAAAAATAGAGAGAGTAATTAGTGGGAAAAGAGCAAGAAACAAT-
196 TAAAAGAGAGCAATGCATAATAAAAATGGAGAGAGTAATTAGTGGG-AAAGAGCAAGAAACAATC
*
8120062 TGTCTGGCAATAGGTTTTATTTGAAATTTGGTTAGTTTGTTAAGATGTTTGATTTAGTTCAAATT
260 GGTCTGGCAATAGGTTTTATTTGAAATTTGGTTAGTTTGTTAAGATGTTTGATTTAGTTCAAATT
8120127 AGAGAAATCAAGGTTATCAAAGAATTTAGAAAGCTAAAAAAAATCATATTAGGATTTCTAGCATT
325 AGAGAAATCAAGGTTATCAAAGAATTTAGAAAGCTAAAAAAAATCATATTAGGATTTCTAGCATT
*
8120192 TTTCCATTTTTTTAAATTTTTGTGAAAATTTTTAAAAATTTCAGAATCTGACGTACCTTTGGTGG
390 TTTCCATTTTTTTAAATTTTTGTGAAAATTTTTAAAAATTTCAGAATCCGACGTACCTTTGGTGG
8120257 CCATTTCCCAATTCCCAACAACAAACCAAAAAACAAACAACCTTTGTTGGTGATGTTGAAAACCT
455 CCATTTCCCAATTCCCAACAACAAACCAAAAAACAAACAACCTTTGTTGGTGATGTTGAAAACCT
8120322 TGACAGTAATATTTGCAAAAGCTAGT
520 TGACAGTAATATTTGCAAAAGCTAGT
8120348 TTGGTGATTTGGTGAAAAAGCTAGTTTATCATAAATAGATTTGGATTTAAATTGCTGAAGATAAA
1 TTGGTGATTTGGTGAAAAAGCTAGTTTATCATAAATAGATTTGGATTTAAATTGCTGAAGATAAA
8120413 TATTAAATTTTTTTATGATAATATGAAAGTTTTCTAAAGATGGAGTCATATTTGATCTGAAACTT
66 TATTAAATTTTTTTATGATAATATGAAAGTTTTCTAAAGATGGAGTCATATTTGATCTGAAACTT
8120478 TGTTGATTTTTCCCTATAAATGAACCTTTAATTCATTTCCAAGAAGAGACAAGAATCACACACGA
131 TGTTGATTTTTCCCTATAAATGAACCTTTAATTCATTTCCAAGAAGAGACAAGAATCACACACGA
* *
8120543 TAAAAAAGAGCAATGCATAATAAAAATAGAGAGAGTAATTAGTGGGAAAAGAGCAAGAAACAATC
196 TAAAAGAGAGCAATGCATAATAAAAATGGAGAGAGTAATTAGTGGG-AAAGAGCAAGAAACAATC
* * *
8120608 GGTCAGGCAATAGGTTTTATTTGAAATTTGGTTAGTTTGTTAAGATTTTTGATTTAGTTCAGATT
260 GGTCTGGCAATAGGTTTTATTTGAAATTTGGTTAGTTTGTTAAGATGTTTGATTTAGTTCAAATT
8120673 AGAGAAATCAAGGTTATCAAAGAATTTAGAAAGCTAAAAAAAATCATATTAGGATTTCTAGCATT
325 AGAGAAATCAAGGTTATCAAAGAATTTAGAAAGCTAAAAAAAATCATATTAGGATTTCTAGCATT
8120738 TTTCCATTTTTTTAAATTTTTGTGAAAATTTTTAAAAATTTCAGAATCCGACGTACCTTTGGTGG
390 TTTCCATTTTTTTAAATTTTTGTGAAAATTTTTAAAAATTTCAGAATCCGACGTACCTTTGGTGG
8120803 CCATTTCCCAATTCCCAACAACAAACCAAAAAACAAACAACCTTTGTTGGTGATGTTGAAAACCT
455 CCATTTCCCAATTCCCAACAACAAACCAAAAAACAAACAACCTTTGTTGGTGATGTTGAAAACCT
*
8120868 TGACAGTAATATTTGCAACAGCTAGT
520 TGACAGTAATATTTGCAAAAGCTAGT
8120894 TTGGTGATTTGGTGAAAAAGCTAGTTTATCATAAATAGATTTGGATTTAAATTGCTGAAGATAAA
1 TTGGTGATTTGGTGAAAAAGCTAGTTTATCATAAATAGATTTGGATTTAAATTGCTGAAGATAAA
*
8120959 TATTAAATTTTTTTATGATAATATGAAAGTTTTCTAAAGAAGGAGTCATATTTGATCTGAAACTT
66 TATTAAATTTTTTTATGATAATATGAAAGTTTTCTAAAGATGGAGTCATATTTGATCTGAAACTT
8121024 TGTTGATTTTTCCCTATAAATGAACCTTTAATTCATTTCCAAGAAGAGACAAGAATCACACACGA
131 TGTTGATTTTTCCCTATAAATGAACCTTTAATTCATTTCCAAGAAGAGACAAGAATCACACACGA
* * *
8121089 TAAAAAAGAGCAATGTATAATAAAAATAGAGAGAGTAATTAGTGGGAAAAGAGCAAGAAACAATC
196 TAAAAGAGAGCAATGCATAATAAAAATGGAGAGAGTAATTAGTGGG-AAAGAGCAAGAAACAATC
* * *
8121154 GGTCAGGCAATAGGTTTTATTTGAAATTTGGTTAGTTTGTTAAGATTTTTGATTTAGTTCAGATT
260 GGTCTGGCAATAGGTTTTATTTGAAATTTGGTTAGTTTGTTAAGATGTTTGATTTAGTTCAAATT
*
8121219 AGAGAAATCAAGGTTATCAAAGAATTTAGAAAGCTAAAAAAAATCATATTAGGATTTCTAGCTTT
325 AGAGAAATCAAGGTTATCAAAGAATTTAGAAAGCTAAAAAAAATCATATTAGGATTTCTAGCATT
*
8121284 TTTCCATTTTTTTTAAATATTTGTGAAAATTTTTAAAAATTTCAGAATCCGACGTACCTTTGGTG
390 TTTCCA-TTTTTTTAAATTTTTGTGAAAATTTTTAAAAATTTCAGAATCCGACGTACCTTTGGTG
8121349 GCCATTTCCCAATTCCCAACAACAAACCAAAAAACAAACAACCTTTGTTGGTGATGTTGAAAACC
454 GCCATTTCCCAATTCCCAACAACAAACCAAAAAACAAACAACCTTTGTTGGTGATGTTGAAAACC
8121414 TTGACAGTAATATTTGCAAAAGCTAGT
519 TTGACAGTAATATTTGCAAAAGCTAGT
8121441 TTGGTGATTTGGTGAAAAAGCTAGTTTATCATAAATAGATTTGGATTTAAATTGCTGAAGATAAA
1 TTGGTGATTTGGTGAAAAAGCTAGTTTATCATAAATAGATTTGGATTTAAATTGCTGAAGATAAA
8121506 TATTAAATTTTTTTATGATAATATGAAAGTTTTCTAAAGATGGAGTCATATTTGATCTGAAACTT
66 TATTAAATTTTTTTATGATAATATGAAAGTTTTCTAAAGATGGAGTCATATTTGATCTGAAACTT
8121571 TGTTGATTTTTCCCTATAAATGAACCTTTAATTCATTTCCAAGAAGAGACAAGAATCACACACGA
131 TGTTGATTTTTCCCTATAAATGAACCTTTAATTCATTTCCAAGAAGAGACAAGAATCACACACGA
* * * *
8121636 TAAAAGAGAGCAATGCATAATAAAAATAGAGAGAGTAATTAGTGAGAAAAGAGCAAAAAACAATT
196 TAAAAGAGAGCAATGCATAATAAAAATGGAGAGAGTAATTAGTG-GGAAAGAGCAAGAAACAATC
* *
8121701 AGTCTGGCAATAGGTTTTATTTGAAATTTGGTTAGTTTGCTAAGATGTTTGATTTAGTTCAAATT
260 GGTCTGGCAATAGGTTTTATTTGAAATTTGGTTAGTTTGTTAAGATGTTTGATTTAGTTCAAATT
8121766 AGAGAAATCAAGGTTATCAAAGAATTTAGAAAGCTAAAAAAAATCATATTAGGATTTCTAGCATT
325 AGAGAAATCAAGGTTATCAAAGAATTTAGAAAGCTAAAAAAAATCATATTAGGATTTCTAGCATT
*
8121831 TTTCCATTTTTTTAAATTTTTGTGAAAATTTTTAAAAATTTCAGAATCCAACGTACCTTTGGTGG
390 TTTCCATTTTTTTAAATTTTTGTGAAAATTTTTAAAAATTTCAGAATCCGACGTACCTTTGGTGG
8121896 CCATTTCCCAATTCCCAACAACAAACCAAAAAACAAACAACCTTTGTTGGTGATGTTGAAAACCT
455 CCATTTCCCAATTCCCAACAACAAACCAAAAAACAAACAACCTTTGTTGGTGATGTTGAAAACCT
8121961 TGACAGTAATATTTGCAAAA
520 TGACAGTAATATTTGCAAAA
8121981 CGTTAAGAGA
Statistics
Matches: 5345, Mismatches: 83, Indels: 25
0.98 0.02 0.00
Matches are distributed among these distances:
539 115 0.02
540 33 0.01
541 86 0.02
542 299 0.06
543 517 0.10
544 718 0.13
545 2097 0.39
546 949 0.18
547 530 0.10
548 1 0.00
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (545 bp):
TTGGTGATTTGGTGAAAAAGCTAGTTTATCATAAATAGATTTGGATTTAAATTGCTGAAGATAAA
TATTAAATTTTTTTATGATAATATGAAAGTTTTCTAAAGATGGAGTCATATTTGATCTGAAACTT
TGTTGATTTTTCCCTATAAATGAACCTTTAATTCATTTCCAAGAAGAGACAAGAATCACACACGA
TAAAAGAGAGCAATGCATAATAAAAATGGAGAGAGTAATTAGTGGGAAAGAGCAAGAAACAATCG
GTCTGGCAATAGGTTTTATTTGAAATTTGGTTAGTTTGTTAAGATGTTTGATTTAGTTCAAATTA
GAGAAATCAAGGTTATCAAAGAATTTAGAAAGCTAAAAAAAATCATATTAGGATTTCTAGCATTT
TTCCATTTTTTTAAATTTTTGTGAAAATTTTTAAAAATTTCAGAATCCGACGTACCTTTGGTGGC
CATTTCCCAATTCCCAACAACAAACCAAAAAACAAACAACCTTTGTTGGTGATGTTGAAAACCTT
GACAGTAATATTTGCAAAAGCTAGT
Found at i:8122352 original size:4 final size:4
Alignment explanation
Indices: 8122307--8122424 Score: 75
Period size: 4 Copynumber: 30.2 Consensus size: 4
8122297 CTTTTTCTGG
* * * * *
8122307 TATT T-TT T-TT TATT TTTT TATT AATA TGTT TATT TGTT TATT TATT
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT
** * * *
8122353 TA-T T-TT TATT TATT TATT TGCT TATT CATT TGTT TATTT TATT TCTT
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TA-TT TATT TATT
* *
8122400 TGA-T TATC TATG TATT TATT TATT T
1 T-ATT TATT TATT TATT TATT TATT T
8122425 GTAAATTTTT
Statistics
Matches: 85, Mismatches: 23, Indels: 12
0.71 0.19 0.10
Matches are distributed among these distances:
3 11 0.13
4 70 0.82
5 4 0.05
ACGTcount: A:0.19, C:0.03, G:0.05, T:0.72
Consensus pattern (4 bp):
TATT
Found at i:8122362 original size:14 final size:14
Alignment explanation
Indices: 8122343--8122371 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
8122333 TGTTTATTTG
8122343 TTTATTTATTTATT
1 TTTATTTATTTATT
8122357 TTTATTTATTTATT
1 TTTATTTATTTATT
8122371 T
1 T
8122372 GCTTATTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTATTTATTTATT
Found at i:8122548 original size:60 final size:61
Alignment explanation
Indices: 8122456--8122644 Score: 254
Period size: 61 Copynumber: 3.1 Consensus size: 61
8122446 CAAAAAATAT
* * ** * *
8122456 TTTTTAAATAAAAATAAACCTTATTAACATATTGGAAGGTTCAAATTTTCAAGAAATGAAT
1 TTTTCAAATAAAAATGAACCTTACCAACATATTGGAAGGTTCAAATTTCCAAGAAATGAAA
* * * *
8122517 TTTTCAAAT-AAAATGAACCTTACCAATATATTGAAATGTTCAAATTTCCAAAAAATGAAA
1 TTTTCAAATAAAAATGAACCTTACCAACATATTGGAAGGTTCAAATTTCCAAGAAATGAAA
* * *
8122577 TTTTCAAATAAAAATGAATCTTACCAACATATTGGAAGGTTCAAGTTTCCAAGAAATAAAA
1 TTTTCAAATAAAAATGAACCTTACCAACATATTGGAAGGTTCAAATTTCCAAGAAATGAAA
8122638 TTTTCAA
1 TTTTCAA
8122645 TAGAATAAAA
Statistics
Matches: 110, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
60 51 0.46
61 59 0.54
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (61 bp):
TTTTCAAATAAAAATGAACCTTACCAACATATTGGAAGGTTCAAATTTCCAAGAAATGAAA
Found at i:8127616 original size:18 final size:18
Alignment explanation
Indices: 8127593--8127639 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
8127583 ATCCTTTTTG
8127593 AAAAAGAAAATTGAAA-GA
1 AAAAAGAAAA-TGAAAGGA
*
8127611 AAAAAGTGAAATGAAAGGA
1 AAAAAG-AAAATGAAAGGA
*
8127630 AAAATGAAAA
1 AAAAAGAAAA
8127640 AGAGAGAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.70, C:0.00, G:0.19, T:0.11
Consensus pattern (18 bp):
AAAAAGAAAATGAAAGGA
Found at i:8127968 original size:8 final size:7
Alignment explanation
Indices: 8127942--8127966 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8127932 GGAATGAAGC
8127942 AAAATAA
1 AAAATAA
8127949 AAAATAA
1 AAAATAA
8127956 AAAATAA
1 AAAATAA
8127963 AAAA
1 AAAA
8127967 ATGAAGACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAATAA
Found at i:8128657 original size:9 final size:9
Alignment explanation
Indices: 8128643--8128697 Score: 60
Period size: 9 Copynumber: 6.1 Consensus size: 9
8128633 CAATTATGGA
8128643 TGCATTCAT
1 TGCATTCAT
8128652 TGCATTCA-
1 TGCATTCAT
*
8128660 TGATATTCAT
1 TG-CATTCAT
8128670 TGCATTCA-
1 TGCATTCAT
8128678 TGACATTCAT
1 TG-CATTCAT
*
8128688 TGCATACAT
1 TGCATTCAT
8128697 T
1 T
8128698 ATCAATAAGA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
8 4 0.10
9 31 0.79
10 4 0.10
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.42
Consensus pattern (9 bp):
TGCATTCAT
Found at i:8128669 original size:18 final size:18
Alignment explanation
Indices: 8128645--8128692 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
8128635 ATTATGGATG
8128645 CATTCATTGCATTCATGA
1 CATTCATTGCATTCATGA
*
8128663 TATTCATTGCATTCATGA
1 CATTCATTGCATTCATGA
8128681 CATTCATTGCAT
1 CATTCATTGCAT
8128693 ACATTATCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.42
Consensus pattern (18 bp):
CATTCATTGCATTCATGA
Found at i:8129112 original size:59 final size:59
Alignment explanation
Indices: 8129042--8129196 Score: 229
Period size: 59 Copynumber: 2.6 Consensus size: 59
8129032 TTGACTTAGG
* *
8129042 TCATTTTTAATTTCGACTTAGGTTCAGACTTAGTCATTTTCAACCTTGGCTCAGTCCGA
1 TCATTTTTAATTTTGACTTAGGCTCAGACTTAGTCATTTTCAACCTTGGCTCAGTCCGA
* * * * *
8129101 TCATTTTTAATTTTAACTTAGGCTCAAACTTAGTCATTTTTAACTTTGGCTCAGTCTGA
1 TCATTTTTAATTTTGACTTAGGCTCAGACTTAGTCATTTTCAACCTTGGCTCAGTCCGA
* *
8129160 TCATTTTTATTTTTGATTTAGGCTCAGACTTAGTCAT
1 TCATTTTTAATTTTGACTTAGGCTCAGACTTAGTCAT
8129197 ATTTTACCTT
Statistics
Matches: 85, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
59 85 1.00
ACGTcount: A:0.23, C:0.18, G:0.14, T:0.45
Consensus pattern (59 bp):
TCATTTTTAATTTTGACTTAGGCTCAGACTTAGTCATTTTCAACCTTGGCTCAGTCCGA
Found at i:8129167 original size:27 final size:27
Alignment explanation
Indices: 8129111--8129168 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
8129101 TCATTTTTAA
*
8129111 TTTTAACTTAGGCTCAAACTTAGTCAT
1 TTTTAACTTAGGCTCAAACTGAGTCAT
* **
8129138 TTTTAACTTTGGCTCAGTCTGA-TCAT
1 TTTTAACTTAGGCTCAAACTGAGTCAT
8129164 TTTTA
1 TTTTA
8129169 TTTTTGATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 9 0.33
27 18 0.67
ACGTcount: A:0.24, C:0.17, G:0.12, T:0.47
Consensus pattern (27 bp):
TTTTAACTTAGGCTCAAACTGAGTCAT
Found at i:8129244 original size:59 final size:58
Alignment explanation
Indices: 8129042--8129237 Score: 223
Period size: 59 Copynumber: 3.3 Consensus size: 58
8129032 TTGACTTAGG
* * * * *
8129042 TCATTTTTAATTTCGACTTAGGTTCAGACTTAGTCATTTTCAACCTTGGCTCAGTCCGA
1 TCATTTTTAATTTTGACTTAGGCTCAGACTTAGTCATTTT-TACCTTTGCTCAGTCAGA
* * * *
8129101 TCATTTTTAATTTTAACTTAGGCTCAAACTTAGTCATTTTTAACTTTGGCTCAGTCTGA
1 TCATTTTTAATTTTGACTTAGGCTCAGACTTAGTCATTTTTACCTTT-GCTCAGTCAGA
* * * *
8129160 TCATTTTTATTTTTGATTTAGGCTCAGACTTAGTCATATTTTACCTTTGTTTAGTTCAG-
1 TCATTTTTAATTTTGACTTAGGCTCAGACTTAGTCAT-TTTTACCTTTGCTCAG-TCAGA
*
8129219 TCATTTTTATTTTTGACTT
1 TCATTTTTAATTTTGACTT
8129238 TAGCTCAATC
Statistics
Matches: 117, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
58 4 0.03
59 101 0.86
60 12 0.10
ACGTcount: A:0.22, C:0.17, G:0.13, T:0.48
Consensus pattern (58 bp):
TCATTTTTAATTTTGACTTAGGCTCAGACTTAGTCATTTTTACCTTTGCTCAGTCAGA
Found at i:8130786 original size:37 final size:39
Alignment explanation
Indices: 8130739--8130814 Score: 104
Period size: 38 Copynumber: 2.0 Consensus size: 39
8130729 TTTCTATTTT
8130739 TTTGTATA-TTTTCATTTCATTTTT-T-ATTATTTTATTA
1 TTTGTATATTTTTCATTTCATTTTTATAATT-TTTTATTA
* *
8130776 TTTGTTTATTTTTCATTTTATTTTTATAATTTTTTATTA
1 TTTGTATATTTTTCATTTCATTTTTATAATTTTTTATTA
8130815 ATCTATTTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
37 7 0.21
38 15 0.44
39 9 0.26
40 3 0.09
ACGTcount: A:0.21, C:0.04, G:0.03, T:0.72
Consensus pattern (39 bp):
TTTGTATATTTTTCATTTCATTTTTATAATTTTTTATTA
Found at i:8130811 original size:28 final size:28
Alignment explanation
Indices: 8130768--8130924 Score: 112
Period size: 28 Copynumber: 5.6 Consensus size: 28
8130758 TTTTTTATTA
8130768 TTTTATTATTTGTTTATTTTTCATTTTAT
1 TTTTA-TATTTGTTTATTTTTCATTTTAT
**
8130797 TTTTATAATTT-TTTATTAATC-TATTTAT
1 TTTTAT-ATTTGTTTATTTTTCAT-TTTAT
8130825 TTGTT-TATTTGTTTATTTTTCATTTTAT
1 TT-TTATATTTGTTTATTTTTCATTTTAT
* * **
8130853 TTGTATAATTT-TTAATTAATC-TATTTAT
1 TTTTAT-ATTTGTTTATTTTTCAT-TTTAT
* *
8130881 TTTT-TATTTATTTATTTGTTTATTTTAT
1 TTTTATATTTGTTTATTT-TTCATTTTAT
*
8130909 TTATT-TATTTGATTAT
1 TT-TTATATTTGTTTAT
8130925 CTATATATTT
Statistics
Matches: 101, Mismatches: 15, Indels: 24
0.72 0.11 0.17
Matches are distributed among these distances:
26 4 0.04
27 13 0.13
28 56 0.55
29 28 0.28
ACGTcount: A:0.22, C:0.03, G:0.04, T:0.71
Consensus pattern (28 bp):
TTTTATATTTGTTTATTTTTCATTTTAT
Found at i:8130825 original size:56 final size:55
Alignment explanation
Indices: 8130765--8130910 Score: 229
Period size: 56 Copynumber: 2.6 Consensus size: 55
8130755 TCATTTTTTA
* *
8130765 TTATTTTATTATTTGTTTATTTTTCATTTTATTTTTATAATTTTTTATTAATCTAT
1 TTATTTT-TTATTTGTTTATTTTTCATTTTATTTGTATAATTTTTAATTAATCTAT
8130821 TTATTTGTTTATTTGTTTATTTTTCATTTTATTTGTATAATTTTTAATTAATCTAT
1 TTATTT-TTTATTTGTTTATTTTTCATTTTATTTGTATAATTTTTAATTAATCTAT
* *
8130877 TTATTTTTTATTTATTTATTTGTTTATTTTATTT
1 TTATTTTTTATTTGTTTATTT-TTCATTTTATTT
8130911 ATTTATTTGA
Statistics
Matches: 84, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
55 14 0.17
56 69 0.82
57 1 0.01
ACGTcount: A:0.22, C:0.03, G:0.03, T:0.72
Consensus pattern (55 bp):
TTATTTTTTATTTGTTTATTTTTCATTTTATTTGTATAATTTTTAATTAATCTAT
Found at i:8130881 original size:4 final size:4
Alignment explanation
Indices: 8130874--8130942 Score: 79
Period size: 4 Copynumber: 17.2 Consensus size: 4
8130864 TTAATTAATC
*
8130874 TATT TATT T-TT TATT TATT TATT TGTT TATTT TATT TATT TATT TGA-T
1 TATT TATT TATT TATT TATT TATT TATT TA-TT TATT TATT TATT T-ATT
* *
8130922 TATC TATA TATT TATT TATT T
1 TATT TATT TATT TATT TATT T
8130943 GTAAATATTT
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
3 4 0.07
4 47 0.84
5 5 0.09
ACGTcount: A:0.23, C:0.01, G:0.03, T:0.72
Consensus pattern (4 bp):
TATT
Found at i:8130896 original size:8 final size:8
Alignment explanation
Indices: 8130752--8130942 Score: 96
Period size: 8 Copynumber: 24.0 Consensus size: 8
8130742 GTATATTTTC
8130752 ATTTCATTT
1 ATTT-ATTT
8130761 -TTTA-TT
1 ATTTATTT
8130767 ATTT-TATT
1 ATTTAT-TT
*
8130775 ATTTGTTT
1 ATTTATTT
*
8130783 ATTT-TTC
1 ATTTATTT
8130790 ATTTTATTT
1 A-TTTATTT
8130799 -TTATAATTT
1 ATT-T-ATTT
*
8130808 -TTTATTA
1 ATTTATTT
*
8130815 ATCTATTT
1 ATTTATTT
*
8130823 ATTTGTTT
1 ATTTATTT
*
8130831 ATTTGTTT
1 ATTTATTT
*
8130839 ATTT-TTC
1 ATTTATTT
8130846 ATTTTATTT
1 A-TTTATTT
* *
8130855 GTATAATTT
1 AT-TTATTT
* *
8130864 -TTAATTA
1 ATTTATTT
*
8130871 ATCTATTT
1 ATTTATTT
8130879 ATTT-TTT
1 ATTTATTT
8130886 ATTTATTT
1 ATTTATTT
*
8130894 ATTTGTTT
1 ATTTATTT
8130902 ATTTTATTT
1 A-TTTATTT
8130911 ATTTATTT
1 ATTTATTT
*
8130919 GA-TTATCT
1 -ATTTATTT
*
8130927 ATATATTT
1 ATTTATTT
8130935 ATTTATTT
1 ATTTATTT
8130943 GTAAATATTT
Statistics
Matches: 143, Mismatches: 22, Indels: 35
0.71 0.11 0.17
Matches are distributed among these distances:
6 2 0.01
7 28 0.20
8 89 0.62
9 24 0.17
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.71
Consensus pattern (8 bp):
ATTTATTT
Found at i:8130934 original size:56 final size:52
Alignment explanation
Indices: 8130765--8130944 Score: 202
Period size: 56 Copynumber: 3.3 Consensus size: 52
8130755 TCATTTTTTA
8130765 TTATTTTATTATTTGTTTATTTTTCATTTTATTTTTATAATTTTTTATTAATCTAT
1 TTATTTT-TTATTTGTTTATTTTTCATTTTATTTTT-T-A-TTTTTATTAATCTAT
*
8130821 TTATTTGTTTATTTGTTTATTTTTCATTTTATTTGTATAATTTTTAATTAATCTAT
1 TTATTT-TTTATTTGTTTATTTTTCATTTTATTT-T-TTATTTTT-ATTAATCTAT
* * *
8130877 TTATTTTTTATTTATTTATTTGTTTATTTTATTTATTTA-TTTGATT-ATCTAT
1 TTATTTTTTATTTGTTTATTT-TTCATTTTATTT-TTTATTTTTATTAATCTAT
*
8130929 ATATTTATTTATTTGT
1 TTATTT-TTTATTTGT
8130945 AAATATTTTT
Statistics
Matches: 110, Mismatches: 8, Indels: 15
0.83 0.06 0.11
Matches are distributed among these distances:
52 11 0.10
53 11 0.10
54 3 0.03
55 21 0.19
56 61 0.55
57 2 0.02
58 1 0.01
ACGTcount: A:0.23, C:0.03, G:0.04, T:0.71
Consensus pattern (52 bp):
TTATTTTTTATTTGTTTATTTTTCATTTTATTTTTTATTTTTATTAATCTAT
Found at i:8131061 original size:60 final size:59
Alignment explanation
Indices: 8130970--8131162 Score: 237
Period size: 60 Copynumber: 3.2 Consensus size: 59
8130960 AAAAAAAAAT
*
8130970 TTTTCAAATAAATATGAA-CCTACCAATATATTGGAAGGTTCAAATTTTCAAGAAATGAAA
1 TTTTCAAATAAA-ATGAATCTTACCAATATATTGGAAGGTTCAAATTTTCAAGAAAT-AAA
* * * * *
8131030 TTTTCAAATAAAATGAATCTTACTAACATATTGGAATGTTCAAATTTCCAAAAAATAAA
1 TTTTCAAATAAAATGAATCTTACCAATATATTGGAAGGTTCAAATTTTCAAGAAATAAA
* * *
8131089 TTTTCAAATTAAAATGAATCTTACCAATAAATTGGAAGGTTC-AAGTTTCTAAGAAATAAT
1 TTTTCAAA-TAAAATGAATCTTACCAATATATTGGAAGGTTCAAATTTTC-AAGAAATAAA
**
8131149 TTTTTTAATAAAAT
1 TTTTCAAATAAAAT
8131163 AAAAAACTTT
Statistics
Matches: 114, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
59 27 0.24
60 87 0.76
ACGTcount: A:0.45, C:0.10, G:0.09, T:0.35
Consensus pattern (59 bp):
TTTTCAAATAAAATGAATCTTACCAATATATTGGAAGGTTCAAATTTTCAAGAAATAAA
Found at i:8131967 original size:20 final size:21
Alignment explanation
Indices: 8131930--8131971 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
8131920 GTACAGGGTC
8131930 GGTTTGATTTTCTATGGGTATG
1 GGTTTGATTTTC-ATGGGTATG
*
8131952 GGTTTGGTTTTC-TGGGTATG
1 GGTTTGATTTTCATGGGTATG
8131972 CGTAATTGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
22 11 0.58
ACGTcount: A:0.10, C:0.05, G:0.36, T:0.50
Consensus pattern (21 bp):
GGTTTGATTTTCATGGGTATG
Found at i:8136616 original size:17 final size:17
Alignment explanation
Indices: 8136583--8136630 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
8136573 TAAAATTGAA
*
8136583 ATTAAAAATT-TTAATTT
1 ATTAAATATTATT-ATTT
8136600 ATTAAATATTATTATTT
1 ATTAAATATTATTATTT
8136617 -TTAAATGATTATTA
1 ATTAAAT-ATTATTA
8136631 AATTAAATCT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 6 0.21
17 20 0.71
18 2 0.07
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (17 bp):
ATTAAATATTATTATTT
Found at i:8137674 original size:24 final size:25
Alignment explanation
Indices: 8137630--8137680 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
8137620 TATTTCAAGT
* *
8137630 TTAAACATAAATAATTAAATTTTTA
1 TTAAAAATAAATAATTAAATTTATA
*
8137655 TTAAAAATAAA-AATTTAATTTATA
1 TTAAAAATAAATAATTAAATTTATA
8137679 TT
1 TT
8137681 TACATATTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (25 bp):
TTAAAAATAAATAATTAAATTTATA
Found at i:8137815 original size:12 final size:12
Alignment explanation
Indices: 8137791--8137824 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
8137781 ATTTTAAATT
*
8137791 TTAAATTTTAAC
1 TTAAATTTAAAC
*
8137803 TTGAATTTAAAC
1 TTAAATTTAAAC
8137815 TTAAATTTAA
1 TTAAATTTAA
8137825 TATTGCAGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47
Consensus pattern (12 bp):
TTAAATTTAAAC
Found at i:8140070 original size:22 final size:19
Alignment explanation
Indices: 8140017--8140074 Score: 57
Period size: 22 Copynumber: 2.9 Consensus size: 19
8140007 CATGATTTTT
8140017 AATATC-AAAAAATAAAAA
1 AATATCAAAAAAATAAAAA
*
8140035 AA-ATCATAATAAATAAATTTAA
1 AATATCA-AAAAAATAAA---AA
8140057 AATATCAAAAAAATAAAA
1 AATATCAAAAAAATAAAA
8140075 GTTTTAGATA
Statistics
Matches: 32, Mismatches: 2, Indels: 11
0.71 0.04 0.24
Matches are distributed among these distances:
17 3 0.09
18 2 0.06
19 10 0.31
22 13 0.41
23 4 0.12
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.22
Consensus pattern (19 bp):
AATATCAAAAAAATAAAAA
Found at i:8147343 original size:2 final size:2
Alignment explanation
Indices: 8147336--8147364 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8147326 TAGTACTGTT
8147336 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8147365 CAGGGTTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8148655 original size:13 final size:13
Alignment explanation
Indices: 8148637--8148661 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8148627 TAAATTTAAA
8148637 AAGAATAACATAT
1 AAGAATAACATAT
8148650 AAGAATAACATA
1 AAGAATAACATA
8148662 ATAAAATTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.08, G:0.08, T:0.20
Consensus pattern (13 bp):
AAGAATAACATAT
Found at i:8149149 original size:5 final size:6
Alignment explanation
Indices: 8149133--8149158 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
8149123 CAGTTTCAGA
8149133 GTTTTT GTTTTT GTTTTT GTTTTT GT
1 GTTTTT GTTTTT GTTTTT GTTTTT GT
8149159 GGCTGTAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.19, T:0.81
Consensus pattern (6 bp):
GTTTTT
Found at i:8152395 original size:10 final size:10
Alignment explanation
Indices: 8152372--8152400 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
8152362 ATTTTATCAT
8152372 TTAAAATA-A
1 TTAAAATATA
8152381 TTAAAATATA
1 TTAAAATATA
8152391 TTAAAATATA
1 TTAAAATATA
8152401 AAAATTTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 8 0.42
10 11 0.58
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
TTAAAATATA
Found at i:8152635 original size:35 final size:37
Alignment explanation
Indices: 8152596--8152680 Score: 129
Period size: 35 Copynumber: 2.3 Consensus size: 37
8152586 CGATCGATTT
8152596 TTTTTTAACTCAAATTCAACTCCA-AAAAAAA-AAAA
1 TTTTTTAACTCAAATTCAACTCCAGAAAAAAATAAAA
*
8152631 TTTTTTAACTCAAATTCAACTCCAGAAAAAAATCAAA
1 TTTTTTAACTCAAATTCAACTCCAGAAAAAAATAAAA
*
8152668 TTGTTTAAACTCA
1 TT-TTTTAACTCA
8152681 CTCGATTAAG
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
35 24 0.53
36 7 0.16
37 5 0.11
38 9 0.20
ACGTcount: A:0.48, C:0.18, G:0.02, T:0.32
Consensus pattern (37 bp):
TTTTTTAACTCAAATTCAACTCCAGAAAAAAATAAAA
Found at i:8152781 original size:10 final size:10
Alignment explanation
Indices: 8152758--8152786 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
8152748 ATTTTATCAT
8152758 TTAAAATA-A
1 TTAAAATATA
8152767 TTAAAATATA
1 TTAAAATATA
8152777 TTAAAATATA
1 TTAAAATATA
8152787 AAAACTTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 8 0.42
10 11 0.58
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
TTAAAATATA
Found at i:8157841 original size:21 final size:22
Alignment explanation
Indices: 8157816--8157861 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
8157806 TGTGTAAATT
*
8157816 GAAGAAAGA-AGAAAACAAAAA
1 GAAGAAAGAGAAAAAACAAAAA
*
8157837 GAAGAAAGAGAAAAAAGAAAAA
1 GAAGAAAGAGAAAAAACAAAAA
8157859 GAA
1 GAA
8157862 AAGGTTAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.76, C:0.02, G:0.22, T:0.00
Consensus pattern (22 bp):
GAAGAAAGAGAAAAAACAAAAA
Found at i:8157856 original size:13 final size:14
Alignment explanation
Indices: 8157820--8157864 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
8157810 TAAATTGAAG
8157820 AAAGAAGAAAACA-A
1 AAAGAAGAAAA-AGA
*
8157834 AAAGAAGAAAGAGA
1 AAAGAAGAAAAAGA
8157848 AAA-AAGAAAAAGA
1 AAAGAAGAAAAAGA
8157861 AAAG
1 AAAG
8157865 GTTAGAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 13 0.48
14 14 0.52
ACGTcount: A:0.78, C:0.02, G:0.20, T:0.00
Consensus pattern (14 bp):
AAAGAAGAAAAAGA
Found at i:8158966 original size:43 final size:43
Alignment explanation
Indices: 8158909--8158990 Score: 114
Period size: 43 Copynumber: 1.9 Consensus size: 43
8158899 ATTTTATATA
*
8158909 TTTATATAAGAATAA-TGATACATTATAATGTTAAATTTTTGTT
1 TTTATATAAGAATAATTG-TACATTATAATATTAAATTTTTGTT
*
8158952 TTTATTATAA-AATAATTGTACATTATAATATTAGATTTT
1 TTTA-TATAAGAATAATTGTACATTATAATATTAAATTTT
8158991 ATGTATATGG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
43 28 0.80
44 7 0.20
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.50
Consensus pattern (43 bp):
TTTATATAAGAATAATTGTACATTATAATATTAAATTTTTGTT
Found at i:8161992 original size:28 final size:28
Alignment explanation
Indices: 8161942--8162010 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 28
8161932 TATCACATTA
*
8161942 ATTAACAAA-TTTATAATTCAAATAT-AT
1 ATTAA-AAATTTTAAAATTCAAATATCAT
* *
8161969 ATTAGAGAATTTTAAAATTTAAATATCAT
1 ATTA-AAAATTTTAAAATTCAAATATCAT
8161998 ATTAAAAATTTTA
1 ATTAAAAATTTTA
8162011 CTATAATTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
27 6 0.17
28 23 0.66
29 6 0.17
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.42
Consensus pattern (28 bp):
ATTAAAAATTTTAAAATTCAAATATCAT
Found at i:8175628 original size:22 final size:22
Alignment explanation
Indices: 8175601--8175642 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
8175591 TTGAACTTGA
*
8175601 ATGTGAATATTTGAAATTTTGG
1 ATGTGAATATTTAAAATTTTGG
*
8175623 ATGTGAATTTTTAAAATTTT
1 ATGTGAATATTTAAAATTTT
8175643 TGAATCTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (22 bp):
ATGTGAATATTTAAAATTTTGG
Found at i:8175652 original size:17 final size:18
Alignment explanation
Indices: 8175626--8175660 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8175616 ATTTTGGATG
*
8175626 TGAAT-TTTTAAAATTTT
1 TGAATCTTTAAAAATTTT
8175643 TGAATCTTTAAAAATTTT
1 TGAATCTTTAAAAATTTT
8175661 CAAATGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.37, C:0.03, G:0.06, T:0.54
Consensus pattern (18 bp):
TGAATCTTTAAAAATTTT
Found at i:8175752 original size:46 final size:46
Alignment explanation
Indices: 8175643--8175760 Score: 123
Period size: 46 Copynumber: 2.6 Consensus size: 46
8175633 TTAAAATTTT
* * *
8175643 TGAATCTTTAAAAATTTTCAAATGAGAATCTTTGAAATCTTGGATG
1 TGAATCTCTAAAATTTTTCAAATGAAAATCTTTGAAATCTTGGATG
** * * *
8175689 CAAAACTCTAAAGTTTTTCAAATGAAAATCTTTG-AAT-TATGGGTG
1 TGAATCTCTAAAATTTTTCAAATGAAAATCTTTGAAATCT-TGGATG
*
8175734 TGAATCTCTAAAATTTTTTAATATGAA
1 TGAATCTCTAAAATTTTTCAA-ATGAA
8175761 TATTTGAATT
Statistics
Matches: 57, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
44 1 0.02
45 24 0.42
46 32 0.56
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.39
Consensus pattern (46 bp):
TGAATCTCTAAAATTTTTCAAATGAAAATCTTTGAAATCTTGGATG
Found at i:8176043 original size:49 final size:49
Alignment explanation
Indices: 8175937--8176084 Score: 142
Period size: 49 Copynumber: 3.0 Consensus size: 49
8175927 ATAATGAAGT
* * **
8175937 TGAAATTCTTGAGAATTCAAAATTTTTACGAATCTG-GAATTCTTGTGAACC
1 TGAAATTCTTGAGAA-TC-ATATTTTTACAAATCTGAG-ATTCTTGTGAATA
* * * *
8175988 TAAAATTCTTGAGAATCATATTTTAACAAATTTGAGATTCTTGCGAATA
1 TGAAATTCTTGAGAATCATATTTTTACAAATCTGAGATTCTTGTGAATA
8176037 TGAAATT-TTAGAGAATC-TAAGTTTTTACAAATCTGAG-TTCTTGTGAAT
1 TGAAATTCTT-GAGAATCAT-A-TTTTTACAAATCTGAGATTCTTGTGAAT
8176085 CTAAGAATTT
Statistics
Matches: 81, Mismatches: 12, Indels: 10
0.79 0.12 0.10
Matches are distributed among these distances:
48 3 0.04
49 47 0.58
50 17 0.21
51 14 0.17
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (49 bp):
TGAAATTCTTGAGAATCATATTTTTACAAATCTGAGATTCTTGTGAATA
Found at i:8176195 original size:187 final size:187
Alignment explanation
Indices: 8175988--8176352 Score: 721
Period size: 187 Copynumber: 2.0 Consensus size: 187
8175978 CTTGTGAACC
8175988 TAAAATTCTTGAGAATCATATTTTAACAAATTTGAGATTCTTGCGAATATGAAATTTTAGAGAAT
1 TAAAATTCTTGAGAATCATATTTTAACAAATTTGAGATTCTTGCGAATATGAAATTTTAGAGAAT
8176053 CTAAGTTTTTACAAATCTGAGTTCTTGTGAATCTAAGAATTTTGGAATCTTCAATTCTAGTGGAT
66 CTAAGTTTTTACAAATCTGAGTTCTTGTGAATCTAAGAATTTTGGAATCTTCAATTCTAGTGGAT
8176118 ATTCAATTCTTGTGCTCTTTGAATTCTTGCTAATCTTCAATTCTTGTGGAAATTTGT
131 ATTCAATTCTTGTGCTCTTTGAATTCTTGCTAATCTTCAATTCTTGTGGAAATTTGT
8176175 TAAAATTCTTGAGAATCATATTTTAACAAATTTGAGATTCTTGCGAATATGAAATTTTAGAGAAT
1 TAAAATTCTTGAGAATCATATTTTAACAAATTTGAGATTCTTGCGAATATGAAATTTTAGAGAAT
*
8176240 CTAAGTTTTTACAAATCTGAGTTCTTGTGAATCTAAGAATTTTGGAATCTTCAGTTCTAGTGGAT
66 CTAAGTTTTTACAAATCTGAGTTCTTGTGAATCTAAGAATTTTGGAATCTTCAATTCTAGTGGAT
8176305 ATTCAATTCTTGTGCTCTTTGAATTCTTGCTAATCTTCAATTCTTGTG
131 ATTCAATTCTTGTGCTCTTTGAATTCTTGCTAATCTTCAATTCTTGTG
8176353 AACCTTTAAA
Statistics
Matches: 177, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
187 177 1.00
ACGTcount: A:0.30, C:0.12, G:0.15, T:0.43
Consensus pattern (187 bp):
TAAAATTCTTGAGAATCATATTTTAACAAATTTGAGATTCTTGCGAATATGAAATTTTAGAGAAT
CTAAGTTTTTACAAATCTGAGTTCTTGTGAATCTAAGAATTTTGGAATCTTCAATTCTAGTGGAT
ATTCAATTCTTGTGCTCTTTGAATTCTTGCTAATCTTCAATTCTTGTGGAAATTTGT
Found at i:8176238 original size:49 final size:49
Alignment explanation
Indices: 8176177--8176271 Score: 115
Period size: 49 Copynumber: 1.9 Consensus size: 49
8176167 AAATTTGTTA
*
8176177 AAATTCTTGAGAATC-ATA-TTTTAACAAATTTGAGATTCTTGCGAATATG
1 AAATTCTTGAGAATCTA-AGTTTTAACAAATCTGAG-TTCTTGCGAATATG
* *
8176226 AAATT-TTAGAGAATCTAAGTTTTTACAAATCTGAGTTCTTGTGAAT
1 AAATTCTT-GAGAATCTAAGTTTTAACAAATCTGAGTTCTTGCGAAT
8176272 CTAAGAATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
48 2 0.05
49 23 0.57
50 15 0.38
ACGTcount: A:0.36, C:0.09, G:0.15, T:0.40
Consensus pattern (49 bp):
AAATTCTTGAGAATCTAAGTTTTAACAAATCTGAGTTCTTGCGAATATG
Found at i:8176375 original size:35 final size:34
Alignment explanation
Indices: 8176306--8176376 Score: 90
Period size: 35 Copynumber: 2.1 Consensus size: 34
8176296 CTAGTGGATA
* * *
8176306 TTCAATTCTTGTGCTCTTTGAATTCTTGCTAATC
1 TTCAATTCTTGTGCTCTTTAAATTCTTACAAATC
8176340 TTCAATTCTTGTGAAC-CTTTAAATTCTTACAAATC
1 TTCAATTCTTGTG--CTCTTTAAATTCTTACAAATC
8176375 TT
1 TT
8176377 TGAACCTTGC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
34 13 0.41
35 18 0.56
36 1 0.03
ACGTcount: A:0.24, C:0.20, G:0.08, T:0.48
Consensus pattern (34 bp):
TTCAATTCTTGTGCTCTTTAAATTCTTACAAATC
Found at i:8178016 original size:20 final size:19
Alignment explanation
Indices: 8177987--8178024 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
8177977 TATTTTATTC
*
8177987 GTTTGTTTAAGTAAAAATT
1 GTTTGTTTAAATAAAAATT
8178006 GTTTAGTTTAAATAAAAAT
1 GTTT-GTTTAAATAAAAAT
8178025 AAATATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (19 bp):
GTTTGTTTAAATAAAAATT
Found at i:8179020 original size:29 final size:30
Alignment explanation
Indices: 8178973--8179035 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 30
8178963 TATTCAATTC
*
8178973 TATTTAAATAAATCCTTATACTTTTATTT-
1 TATTTAAATAAATCCTTATACTTTCATTTA
** *
8179002 TATTTAAATAAATTTTTATCCTTTCATTTA
1 TATTTAAATAAATCCTTATACTTTCATTTA
8179032 TATT
1 TATT
8179036 CATATAATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 25 0.86
30 4 0.14
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (30 bp):
TATTTAAATAAATCCTTATACTTTCATTTA
Found at i:8179147 original size:30 final size:30
Alignment explanation
Indices: 8179070--8179160 Score: 96
Period size: 30 Copynumber: 3.0 Consensus size: 30
8179060 AAGTTGATTT
* * *
8179070 ATATTAAGAGCTTATTTAGATAAAAATTAA
1 ATATTAAGAGTTTATTTGGATACAAATTAA
8179100 ATATTAATGA-TTTATTTGGATACAAATTATA
1 ATATTAA-GAGTTTATTTGGATACAAATTA-A
* * *
8179131 A-GTTAAGAGTTTATTTGAATGCAAATTAA
1 ATATTAAGAGTTTATTTGGATACAAATTAA
8179160 A
1 A
8179161 AATTTAAAAC
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
29 4 0.08
30 44 0.85
31 4 0.08
ACGTcount: A:0.45, C:0.03, G:0.12, T:0.40
Consensus pattern (30 bp):
ATATTAAGAGTTTATTTGGATACAAATTAA
Found at i:8179175 original size:30 final size:28
Alignment explanation
Indices: 8179141--8179197 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
8179131 AGTTAAGAGT
* *
8179141 TTATTTGAATGCAAATTAAAAATTTAAAAC
1 TTATTCGAATGC-AA-TAAAAATATAAAAC
*
8179171 TTATTCGGATGCAATAAAAATATAAAA
1 TTATTCGAATGCAATAAAAATATAAAA
8179198 TATTATTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 12 0.50
29 2 0.08
30 10 0.42
ACGTcount: A:0.51, C:0.07, G:0.09, T:0.33
Consensus pattern (28 bp):
TTATTCGAATGCAATAAAAATATAAAAC
Found at i:8179423 original size:3 final size:3
Alignment explanation
Indices: 8179345--8179411 Score: 134
Period size: 3 Copynumber: 22.3 Consensus size: 3
8179335 ATCTTCACAT
8179345 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8179393 ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA A
8179412 AAACCTAATA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:8181300 original size:18 final size:18
Alignment explanation
Indices: 8181270--8181314 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
8181260 AAAAATTATC
*
8181270 ATATATTTATATTTT-TTA
1 ATAT-TTTATATTTTATAA
8181288 ATATTTTATTATTTTATAA
1 ATATTTTA-TATTTTATAA
8181307 ATATTTTA
1 ATATTTTA
8181315 AAAATATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 4 0.17
18 10 0.42
19 10 0.42
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
ATATTTTATATTTTATAA
Found at i:8181310 original size:29 final size:28
Alignment explanation
Indices: 8181278--8181348 Score: 72
Period size: 29 Copynumber: 2.4 Consensus size: 28
8181268 TCATATATTT
*
8181278 ATATTTTTTAATATTTT-ATTATTTTATAA
1 ATATTTTTTAATATTTTAATTA-TTCAT-A
**
8181307 ATATTTTAAAAATATTTTAATTATTCATA
1 ATATTTT-TTAATATTTTAATTATTCATA
8181336 ATATTTTTATAAT
1 ATATTTTT-TAAT
8181349 GATATTAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
29 18 0.53
30 12 0.35
31 4 0.12
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.59
Consensus pattern (28 bp):
ATATTTTTTAATATTTTAATTATTCATA
Found at i:8181313 original size:11 final size:11
Alignment explanation
Indices: 8181278--8181325 Score: 50
Period size: 11 Copynumber: 4.7 Consensus size: 11
8181268 TCATATATTT
*
8181278 ATATTTT-TTA
1 ATATTTTATAA
8181288 ATATTTTAT--
1 ATATTTTATAA
8181297 -TATTTTATAA
1 ATATTTTATAA
*
8181307 ATATTTTAAAA
1 ATATTTTATAA
8181318 ATATTTTA
1 ATATTTTA
8181326 ATTATTCATA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
8 8 0.24
10 7 0.21
11 18 0.55
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
ATATTTTATAA
Found at i:8181326 original size:11 final size:11
Alignment explanation
Indices: 8181297--8181326 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
8181287 AATATTTTAT
*
8181297 TATTTTATAAA
1 TATTTTAAAAA
8181308 TATTTTAAAAA
1 TATTTTAAAAA
8181319 TATTTTAA
1 TATTTTAA
8181327 TTATTCATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:8181344 original size:30 final size:30
Alignment explanation
Indices: 8181287--8181342 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
8181277 TATATTTTTT
*
8181287 AATATTTTATTATTTTATAAATATTTTAAA
1 AATATTTTATTATTTCATAAATATTTTAAA
8181317 AATATTTTAATTA-TTCAT-AATATTTT
1 AATATTTT-ATTATTTCATAAATATTTT
8181343 TATAATGATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
29 8 0.33
30 12 0.50
31 4 0.17
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (30 bp):
AATATTTTATTATTTCATAAATATTTTAAA
Found at i:8181411 original size:14 final size:14
Alignment explanation
Indices: 8181376--8181414 Score: 62
Period size: 13 Copynumber: 2.9 Consensus size: 14
8181366 GTTTTTACTC
*
8181376 ATATTTTTTAATAT
1 ATATTTTTAAATAT
8181390 A-ATTTTTAAATAT
1 ATATTTTTAAATAT
8181403 ATATTTTTAAAT
1 ATATTTTTAAAT
8181415 TAAAAAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
ATATTTTTAAATAT
Found at i:8181669 original size:21 final size:21
Alignment explanation
Indices: 8181640--8181697 Score: 98
Period size: 21 Copynumber: 2.8 Consensus size: 21
8181630 ATAAATAATA
*
8181640 ATAAAAATAAAATTAATTATT
1 ATAATAATAAAATTAATTATT
8181661 ATAATAATAAAATTAATTATT
1 ATAATAATAAAATTAATTATT
*
8181682 ATAGTAATAAAATTAA
1 ATAATAATAAAATTAA
8181698 AATTAATTAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (21 bp):
ATAATAATAAAATTAATTATT
Found at i:8181672 original size:27 final size:26
Alignment explanation
Indices: 8181622--8181706 Score: 85
Period size: 24 Copynumber: 3.5 Consensus size: 26
8181612 ATTAATTTTG
*
8181622 ATAAAATT-A-TAAATAATAATAAAA
1 ATAAAATTAATTATATAATAATAAAA
8181646 ATAAAATTAATTAT-T-ATAAT---A
1 ATAAAATTAATTATATAATAATAAAA
*
8181667 ATAAAATTAATTATTATAGTAATAAAA
1 ATAAAATTAATTA-TATAATAATAAAA
*
8181694 TTAAAATTAATTA
1 ATAAAATTAATTA
8181707 CGAGAAATAT
Statistics
Matches: 50, Mismatches: 3, Indels: 13
0.76 0.05 0.20
Matches are distributed among these distances:
21 14 0.28
22 1 0.02
23 1 0.02
24 17 0.34
25 2 0.04
26 2 0.04
27 13 0.26
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (26 bp):
ATAAAATTAATTATATAATAATAAAA
Found at i:8188329 original size:17 final size:18
Alignment explanation
Indices: 8188290--8188350 Score: 79
Period size: 17 Copynumber: 3.4 Consensus size: 18
8188280 ACAAAGTATA
* * *
8188290 GTGGCTTGGTAGTGTTCG
1 GTGGCTTGGCAATGTTAG
8188308 GTGGCTTGGCAATGTT-G
1 GTGGCTTGGCAATGTTAG
8188325 GTGGCTTGGCAATGTTAGG
1 GTGGCTTGGCAATGTTA-G
8188344 GTGGCTT
1 GTGGCTT
8188351 TACAAGTGTT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
17 17 0.44
18 14 0.36
19 8 0.21
ACGTcount: A:0.10, C:0.11, G:0.43, T:0.36
Consensus pattern (18 bp):
GTGGCTTGGCAATGTTAG
Found at i:8189187 original size:20 final size:22
Alignment explanation
Indices: 8189142--8189190 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
8189132 CGAAATTAAC
8189142 AAATATTATTTTTTAAAATATA
1 AAATATTATTTTTTAAAATATA
8189164 AAATATTATTTTTT-AAATAT-
1 AAATATTATTTTTTAAAATATA
8189184 AAATATT
1 AAATATT
8189191 TAAAAATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 7 0.26
21 6 0.22
22 14 0.52
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
AAATATTATTTTTTAAAATATA
Found at i:8189198 original size:30 final size:30
Alignment explanation
Indices: 8189163--8189223 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
8189153 TTTAAAATAT
* * * *
8189163 AAAATATTATTTTTTAAATATAAATATTTA
1 AAAATATAATTATATAAATATAAATAATTA
*
8189193 AAAATATAATTATATAAATATATATAATTA
1 AAAATATAATTATATAAATATAAATAATTA
8189223 A
1 A
8189224 TTAATTAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (30 bp):
AAAATATAATTATATAAATATAAATAATTA
Found at i:8189199 original size:16 final size:16
Alignment explanation
Indices: 8189178--8189216 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
8189168 ATTATTTTTT
*
8189178 AAATATAAATATTTAA
1 AAATATAAATATATAA
*
8189194 AAATATAATTATATAA
1 AAATATAAATATATAA
*
8189210 ATATATA
1 AAATATA
8189217 TAATTAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
AAATATAAATATATAA
Found at i:8189645 original size:34 final size:33
Alignment explanation
Indices: 8189599--8189681 Score: 89
Period size: 33 Copynumber: 2.5 Consensus size: 33
8189589 TGGAAACCTT
8189599 AGATATCACCATT-AAGAAAAATGCAAACA-ACTTC
1 AGATATCACCATTGAA-AAAAA-GCAAA-AGACTTC
*
8189633 AGATATCTCCATTGAAAAAAAGCAAAAGACTTC
1 AGATATCACCATTGAAAAAAAGCAAAAGACTTC
* * *
8189666 GGATATTATCATTGAA
1 AGATATCACCATTGAA
8189682 GGAAACTCAA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
32 1 0.02
33 22 0.52
34 17 0.40
35 2 0.05
ACGTcount: A:0.47, C:0.17, G:0.12, T:0.24
Consensus pattern (33 bp):
AGATATCACCATTGAAAAAAAGCAAAAGACTTC
Found at i:8189658 original size:33 final size:34
Alignment explanation
Indices: 8189599--8189671 Score: 89
Period size: 34 Copynumber: 2.2 Consensus size: 34
8189589 TGGAAACCTT
8189599 AGATATCACCATTAAGAAAAATGCAAACA-ACTTC
1 AGATATCACCATTAAGAAAAATGCAAA-AGACTTC
*
8189633 AGATATCTCCATTGAA-AAAAA-GCAAAAGACTTC
1 AGATATCACCATT-AAGAAAAATGCAAAAGACTTC
*
8189666 GGATAT
1 AGATAT
8189672 TATCATTGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
32 1 0.03
33 15 0.43
34 17 0.49
35 2 0.06
ACGTcount: A:0.48, C:0.18, G:0.12, T:0.22
Consensus pattern (34 bp):
AGATATCACCATTAAGAAAAATGCAAAAGACTTC
Found at i:8190259 original size:57 final size:58
Alignment explanation
Indices: 8190195--8190543 Score: 438
Period size: 60 Copynumber: 6.0 Consensus size: 58
8190185 TCTTGTTCAG
*
8190195 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTG-AATTTTAATTTCGA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAATTTTAATTTTGA
* * *
8190252 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTTATTTTTTTGAAAATTT-A-TTAG-
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA--TATTTTTTTGAAATTTTAATTTTGA
* * *
8190309 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATCTTTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAATTTTAATTTTGA
* * *
8190367 GGAAAATTAATACTTTCAACTTTTCCTCAAAAATCTCTTTTTTTGAAATTTT-ATTTTGAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA--TATTTTTTTGAAATTTTAATTTTG-A
* * * * *
8190427 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATGTTTTTTTTAAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAT-ATTTTTTTGAAATTTTAATTTTGA
* *
8190486 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTT-GAAATTTTAATTTT
8190544 TATTTAAAGA
Statistics
Matches: 255, Mismatches: 24, Indels: 23
0.84 0.08 0.08
Matches are distributed among these distances:
55 15 0.06
57 66 0.26
58 35 0.14
59 69 0.27
60 70 0.27
ACGTcount: A:0.33, C:0.12, G:0.08, T:0.47
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAATTTTAATTTTGA
Found at i:8190495 original size:59 final size:58
Alignment explanation
Indices: 8190195--8190545 Score: 478
Period size: 59 Copynumber: 6.0 Consensus size: 58
8190185 TCTTGTTCAG
* * * **
8190195 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTG-AATTTTAATTTCGA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTGAAATTTTATTTTTAA
* *
8190252 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTTATTTTTTTGAAAATTTA---TTAG
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-TT-TTTTTTTGAAATTTTATTTTTAA
* *
8190309 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATCTTTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTGAAATTTTATTTTTAA
* *
8190367 GGAAAATTAATACTTTCAACTTTTCCTCAAAAATCTCTTTTTTTGAAATTTTATTTTGAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAT-T-TTTTTTTGAAATTTTATTTTTAA
*
8190427 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATGTTTTTTTTAAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAT-TTTTTTTTGAAATTTTATTTTTAA
8190486 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAAT-TTTTTTTT-GAAATTTT-ATTTTTA
8190546 TTTAAAGAAA
Statistics
Matches: 263, Mismatches: 20, Indels: 18
0.87 0.07 0.06
Matches are distributed among these distances:
55 15 0.06
56 1 0.00
57 65 0.25
58 37 0.14
59 69 0.26
60 69 0.26
61 7 0.03
ACGTcount: A:0.33, C:0.12, G:0.08, T:0.47
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTGAAATTTTATTTTTAA
Found at i:8190590 original size:27 final size:27
Alignment explanation
Indices: 8190553--8190646 Score: 75
Period size: 27 Copynumber: 3.3 Consensus size: 27
8190543 TTATTTAAAG
*
8190553 AAAATAGAATAAATAAAGAAATAAATA
1 AAAATAAAATAAATAAAGAAATAAATA
*
8190580 AAAATAAAAT--ATAAAGAAAGGTAAAACA
1 AAAATAAAATAAATAAAGAAA--T-AAATA
*
8190608 AAAATAAAAATAAGATAAAGATAAAAAATA
1 AAAAT-AAAATAA-ATAAAGA-AATAAATA
*
8190638 TTAAATAAA
1 -AAAATAAA
8190647 TCTAATCTAA
Statistics
Matches: 53, Mismatches: 5, Indels: 15
0.73 0.07 0.21
Matches are distributed among these distances:
25 9 0.17
27 10 0.19
28 9 0.17
29 5 0.09
30 7 0.13
31 4 0.08
32 7 0.13
33 2 0.04
ACGTcount: A:0.73, C:0.01, G:0.07, T:0.18
Consensus pattern (27 bp):
AAAATAAAATAAATAAAGAAATAAATA
Found at i:8190593 original size:17 final size:17
Alignment explanation
Indices: 8190563--8190634 Score: 56
Period size: 17 Copynumber: 4.2 Consensus size: 17
8190553 AAAATAGAAT
*
8190563 AAATAAAGAAATAAATAA
1 AAATAAA-ATATAAATAA
*
8190581 AAATAAAATATAAAGAA
1 AAATAAAATATAAATAA
** * *
8190598 AGGTAAAACAAAAATAA
1 AAATAAAATATAAATAA
*
8190615 AAATAAGATA-AAGATAA
1 AAATAAAATATAA-ATAA
8190632 AAA
1 AAA
8190635 ATATTAAATA
Statistics
Matches: 42, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
16 2 0.05
17 33 0.79
18 7 0.17
ACGTcount: A:0.75, C:0.01, G:0.08, T:0.15
Consensus pattern (17 bp):
AAATAAAATATAAATAA
Found at i:8190627 original size:28 final size:28
Alignment explanation
Indices: 8190561--8190633 Score: 76
Period size: 28 Copynumber: 2.6 Consensus size: 28
8190551 AGAAAATAGA
* * *
8190561 ATAAATAAAGAAATAAATAAAAATAAAAT
1 ATAAAGAAAGATA-AAACAAAAATAAAAT
*
8190590 ATAAAGAAAGGTAAAACAAAAATAAAA-
1 ATAAAGAAAGATAAAACAAAAATAAAAT
*
8190617 ATAAGATAAAGATAAAA
1 ATAA-AGAAAGATAAAA
8190634 AATATTAAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
27 4 0.11
28 23 0.62
29 10 0.27
ACGTcount: A:0.74, C:0.01, G:0.08, T:0.16
Consensus pattern (28 bp):
ATAAAGAAAGATAAAACAAAAATAAAAT
Found at i:8191733 original size:23 final size:24
Alignment explanation
Indices: 8191700--8191755 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
8191690 ATAAAAAAAA
*
8191700 ATAATA-ATATAATAATAATACATAT
1 ATAATATATA-AATAA-ATTACATAT
8191725 ATAACTATATAAATAAATTACATAT
1 ATAA-TATATAAATAAATTACATAT
8191750 A-AATAT
1 ATAATAT
8191756 TAACAAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
23 3 0.11
24 2 0.07
25 13 0.46
26 7 0.25
27 3 0.11
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (24 bp):
ATAATATATAAATAAATTACATAT
Found at i:8191935 original size:20 final size:21
Alignment explanation
Indices: 8191910--8191948 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8191900 TTACCCCATT
*
8191910 TGGGCC-AGGCCCAATTGGTC
1 TGGGCCTAGACCCAATTGGTC
8191930 TGGGCCTAGACCCAATTGG
1 TGGGCCTAGACCCAATTGG
8191949 GTGTCTACAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.18, C:0.28, G:0.33, T:0.21
Consensus pattern (21 bp):
TGGGCCTAGACCCAATTGGTC
Found at i:8192056 original size:8 final size:8
Alignment explanation
Indices: 8192043--8192112 Score: 63
Period size: 8 Copynumber: 8.8 Consensus size: 8
8192033 ACATTGTCAT
*
8192043 TTTTTTTA
1 TTTTTTTG
*
8192051 TTTTTTGTA
1 TTTTTT-TG
8192060 TTTTTTTG
1 TTTTTTTG
8192068 TTGTTTTT-
1 TT-TTTTTG
* *
8192076 TGTTGTT-
1 TTTTTTTG
*
8192083 TTTTGTTG
1 TTTTTTTG
8192091 TTTTTTTG
1 TTTTTTTG
8192099 TTTTTTTG
1 TTTTTTTG
8192107 TTTTTT
1 TTTTTT
8192113 AACCAAAGCT
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
7 10 0.19
8 31 0.57
9 13 0.24
ACGTcount: A:0.03, C:0.00, G:0.13, T:0.84
Consensus pattern (8 bp):
TTTTTTTG
Found at i:8192064 original size:10 final size:9
Alignment explanation
Indices: 8192042--8192112 Score: 74
Period size: 10 Copynumber: 7.6 Consensus size: 9
8192032 AACATTGTCA
8192042 TTTTTTT-T
1 TTTTTTTGT
*
8192050 ATTTTTTGT
1 TTTTTTTGT
8192059 ATTTTTTTGT
1 -TTTTTTTGT
8192069 TGTTTTTTGT
1 T-TTTTTTGT
8192079 TGTTTTTTGT
1 T-TTTTTTGT
8192089 TGTTTTTT-T
1 T-TTTTTTGT
8192098 GTTTTTTTGT
1 -TTTTTTTGT
8192108 TTTTT
1 TTTTT
8192113 AACCAAAGCT
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
8 6 0.11
9 14 0.25
10 36 0.64
ACGTcount: A:0.03, C:0.00, G:0.13, T:0.85
Consensus pattern (9 bp):
TTTTTTTGT
Found at i:8192074 original size:20 final size:19
Alignment explanation
Indices: 8192042--8192105 Score: 85
Period size: 20 Copynumber: 3.3 Consensus size: 19
8192032 AACATTGTCA
*
8192042 TTTTTT-TTATTTTTTGTAT
1 TTTTTTGTTGTTTTTTGT-T
8192061 TTTTTTGTTGTTTTTTGTT
1 TTTTTTGTTGTTTTTTGTT
8192080 GTTTTTTGTTGTTTTTTTGTT
1 -TTTTTTGTTG-TTTTTTGTT
8192101 TTTTT
1 TTTTT
8192106 GTTTTTTAAC
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
19 7 0.17
20 25 0.61
21 9 0.22
ACGTcount: A:0.03, C:0.00, G:0.12, T:0.84
Consensus pattern (19 bp):
TTTTTTGTTGTTTTTTGTT
Found at i:8192279 original size:41 final size:41
Alignment explanation
Indices: 8192123--8192842 Score: 1024
Period size: 41 Copynumber: 17.7 Consensus size: 41
8192113 AACCAAAGCT
* *
8192123 AGAGGCACCATGACTTTGG-AACTAAATTGCTCCTCTAAAC
1 AGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAAC
*
8192163 AGAGGTACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAAC
1 AGAGGCACCACGACTTTGG-AAAGTAAATTGCTCCTCTAAAC
*
8192205 AGAGGCA--ACGAAC-TTGAAAAGTAAATTGCTCCTCTAAAC
1 AGAGGCACCACG-ACTTTGGAAAGTAAATTGCTCCTCTAAAC
* *
8192244 AGAGGTACCAGGACTTTGGAAAGTAAATTGCTCCTCTAAAC
1 AGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAAC
*
8192285 AGAGGCA--ACGAAC-TTGAAAAGTAAATTGCTCCTCTAAAC
1 AGAGGCACCACG-ACTTTGGAAAGTAAATTGCTCCTCTAAAC
* *
8192324 AGAGGCA--ACGAACTTTGAAAAGTAAATTGCTCTTCTAAAC
1 AGAGGCACCACG-ACTTTGGAAAGTAAATTGCTCCTCTAAAC
* *
8192364 AGAGGTACCACAACTTTGGAAAGTAAATTGCTCCTCTAAAC
1 AGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAAC
* *
8192405 AGAGGCA--ACGAACTTTGAAAAAGTAAATTGCTCCTCTAAAT
1 AGAGGCACCACG-ACTTTG-GAAAGTAAATTGCTCCTCTAAAC
*
8192446 AGAGGTACCACGACTTTGGAAAGTAAATTGCTCCTCTAAAC
1 AGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAAC
8192487 AGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAAC
1 AGAGGCACCACGACTTTGG-AAAGTAAATTGCTCCTCTAAAC
*
8192529 AGAGGCACCACGACTTTGGAAAGTAAATAGCTCCTCTAAAC
1 AGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAAC
8192570 AGAGGCA--ACGAAC-TTGGAAAGTAAATTGCTCCTCTAAAC
1 AGAGGCACCACG-ACTTTGGAAAGTAAATTGCTCCTCTAAAC
* ** *
8192609 AGAGGCAACGGGACTTTGGAAATTAAATTGCTCCTCTAAAC
1 AGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAAC
8192650 AGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAAC
1 AGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAAC
*
8192691 AGAGGCACCACGACTTTGAAAAAGTAAATTGCTCCTCTAAAC
1 AGAGGCACCACGACTTTG-GAAAGTAAATTGCTCCTCTAAAC
8192733 AGAGGCA--ACGGAACTTT-GAAAGTAAATTGCTCCTCTAAAC
1 AGAGGCACCAC-G-ACTTTGGAAAGTAAATTGCTCCTCTAAAC
*
8192773 AGAGGCACCACGACTTTGGAAAGTAAATTGTTCCTCTAAAC
1 AGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAAC
8192814 AGAGGCACCACGACTTTGGAAAAGTAAAT
1 AGAGGCACCACGACTTTGG-AAAGTAAAT
8192843 ACTCCTAGAC
Statistics
Matches: 618, Mismatches: 36, Indels: 50
0.88 0.05 0.07
Matches are distributed among these distances:
39 105 0.17
40 104 0.17
41 286 0.46
42 120 0.19
43 3 0.00
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (41 bp):
AGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAAC
Found at i:8192646 original size:204 final size:203
Alignment explanation
Indices: 8192135--8192842 Score: 1069
Period size: 204 Copynumber: 3.5 Consensus size: 203
8192125 AGGCACCATG
* *
8192135 ACTTTGG-AACTAAATTGCTCCTCTAAACAGAGGTACCACGACTTTGGAAAAGTAAATTGCTCCT
1 ACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGG-ACAACGACTTTGG-AAAGTAAATTGCTCCT
*
8192199 CTAAACAGAGGCAACGAAC-TTGAAAAGTAAATTGCTCCTCTAAACAGAGGTACCAGGACTTTGG
64 CTAAACAGAGGCAACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGTACCACGACTTTGG
8192263 AAAGTAAATTGCTCCTCTAAACAGAGGCA--ACGAAC-TT-GAAAAGTAAATTGCTCCTCTAAAC
129 AAAGTAAATTGCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAAGTAAATTGCTCCTCTAAAC
8192324 AGAGGCAACGA
193 AGAGGCAACGA
* * * *
8192335 ACTTTGAAAAGTAAATTGCTCTTCTAAACAGAGGTACCACAACTTTGGAAAGTAAATTGCTCCTC
1 ACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGG-ACAACGACTTTGGAAAGTAAATTGCTCCTC
*
8192400 TAAACAGAGGCAACGAACTTTGAAAAAGTAAATTGCTCCTCTAAATAGAGGTACCACGACTTTGG
65 TAAACAGAGGCAACGAACTTTG-AAAAGTAAATTGCTCCTCTAAACAGAGGTACCACGACTTTGG
8192465 AAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACA
129 AAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACA
8192530 GAGGCACCACG-
194 GAGGCA--ACGA
*
8192541 ACTTTGGAAAGTAAATAGCTCCTCTAAACAGAGG-CAACGAAC-TTGGAAAGTAAATTGCTCCTC
1 ACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGACAACG-ACTTTGGAAAGTAAATTGCTCCTC
* * * *
8192604 TAAACAGAGGCAACGGGACTTTGGAAATTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGG
65 TAAACAGAGGCAAC-GAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGTACCACGACTTTGG
*
8192669 AAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATTGCTCCTCTAAACA
129 AAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACA
8192734 GAGGCAACGGA
194 GAGGCAAC-GA
* *
8192745 ACTTT-GAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGTTCCTC
1 ACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGG-ACAACGACTTTGGAAAGTAAATTGCTCCTC
8192809 TAAACAGAGGCACCACG-ACTTTGGAAAAGTAAAT
65 TAAACAGAGGCA--ACGAACTTT-GAAAAGTAAAT
8192843 ACTCCTAGAC
Statistics
Matches: 467, Mismatches: 22, Indels: 32
0.90 0.04 0.06
Matches are distributed among these distances:
200 41 0.09
201 40 0.09
202 71 0.15
203 30 0.06
204 158 0.34
205 81 0.17
206 41 0.09
207 5 0.01
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (203 bp):
ACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGACAACGACTTTGGAAAGTAAATTGCTCCTCT
AAACAGAGGCAACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGTACCACGACTTTGGAA
AGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGA
GGCAACGA
Found at i:8192798 original size:285 final size:284
Alignment explanation
Indices: 8192123--8192848 Score: 1139
Period size: 285 Copynumber: 2.6 Consensus size: 284
8192113 AACCAAAGCT
* * *
8192123 AGAGGCACCATGACTTTG--GAACTAAATTGCTCCTCTAAACAGAGGTACCACGACTTTGGAAAA
1 AGAGGCACCACGACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGG-ACCACGACTTTGG-AAA
*
8192186 GTAAATTGCTCCTCTAAACAGAGGCA--ACGAAC-TTGAAAAGTAAATTGCTCCTCTAAACAGAG
64 GTAAATTGCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAGTAAATTGCTCCTCTAAACAGAG
* * *
8192248 GTACCAGGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCAACGAACTTGAAAAGTAAATTG
128 GCACCACGACTTTGGAAAGTAAATAGCTCCTCTAAACAGAGGCAACGAACTTGAAAAGTAAATTG
* *
8192313 CTCCTCTAAACAGAGGCAACGAACTTTGAAAAGTAAATTGCTCTTCTAAACAGAGGTACCACAAC
193 CTCCTCTAAACAGAGGCAACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACAAC
8192378 TTTGGAAAGTAAATTGCTCCTCTAAAC
258 TTTGGAAAGTAAATTGCTCCTCTAAAC
*
8192405 AGAGGCA--ACGAACTTTGAAAAAGTAAATTGCTCCTCTAAATAGAGGTACCACGACTTTGGAAA
1 AGAGGCACCACG-ACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGG-ACCACGACTTTGGAAA
8192468 GTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAG
64 GTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATTGCTCCTCTAAACAGAG
*
8192533 GCACCACGACTTTGGAAAGTAAATAGCTCCTCTAAACAGAGGCAACGAACTTGGAAAGTAAATTG
128 GCACCACGACTTTGGAAAGTAAATAGCTCCTCTAAACAGAGGCAACGAACTTGAAAAGTAAATTG
* * * *
8192598 CTCCTCTAAACAGAGGCAACGGGACTTTGGAAATTAAATTGCTCCTCTAAACAGAGGCACCACGA
193 CTCCTCTAAACAGAGGCAAC-GAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACAA
8192663 CTTTGGAAAGTAAATTGCTCCTCTAAAC
257 CTTTGGAAAGTAAATTGCTCCTCTAAAC
*
8192691 AGAGGCACCACGACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGG-CAACGGAACTTT-GAAA
1 AGAGGCACCACGACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGACCAC-G-ACTTTGGAAA
*
8192754 GTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGTTCCTCTAAACAGAGG
64 GTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGG
8192819 CACCACGACTTTGGAAAAGTAAATA-CTCCT
129 CACCACGACTTTGG-AAAGTAAATAGCTCCT
8192849 AGACAATCAT
Statistics
Matches: 413, Mismatches: 18, Indels: 23
0.91 0.04 0.05
Matches are distributed among these distances:
280 2 0.00
281 6 0.01
282 36 0.09
283 40 0.10
284 6 0.01
285 155 0.38
286 126 0.31
287 39 0.09
288 3 0.01
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (284 bp):
AGAGGCACCACGACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGACCACGACTTTGGAAAGT
AAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCA
CCACGACTTTGGAAAGTAAATAGCTCCTCTAAACAGAGGCAACGAACTTGAAAAGTAAATTGCTC
CTCTAAACAGAGGCAACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACAACTTT
GGAAAGTAAATTGCTCCTCTAAAC
Found at i:8194107 original size:14 final size:13
Alignment explanation
Indices: 8194090--8194131 Score: 66
Period size: 14 Copynumber: 3.1 Consensus size: 13
8194080 TTTTTCCTTC
8194090 TTTCTTTCTTTTTT
1 TTTCTTT-TTTTTT
8194104 TTTCTTTTTTTTTT
1 TTTC-TTTTTTTTT
8194118 TTTCTTTTTTTTT
1 TTTCTTTTTTTTT
8194131 T
1 T
8194132 CATTTTTCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.37
14 14 0.52
15 3 0.11
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (13 bp):
TTTCTTTTTTTTT
Found at i:8194114 original size:11 final size:11
Alignment explanation
Indices: 8194079--8194138 Score: 57
Period size: 11 Copynumber: 5.2 Consensus size: 11
8194069 CATTTTCTCA
* *
8194079 TTTTTTCCTTC
1 TTTTTTTCTTT
*
8194090 TTTCTTTCTTTT
1 TTTTTTTC-TTT
*
8194102 TTTTTCTTTTTT
1 TTTTT-TTCTTT
8194114 TTTTTTTCTTT
1 TTTTTTTCTTT
8194125 TTTTTTTCATTT
1 TTTTTTTC-TTT
8194137 TT
1 TT
8194139 CATCCATTGT
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
11 19 0.47
12 19 0.47
13 2 0.05
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:8194137 original size:18 final size:17
Alignment explanation
Indices: 8194080--8194139 Score: 57
Period size: 18 Copynumber: 3.4 Consensus size: 17
8194070 ATTTTCTCAT
* *
8194080 TTTTTCCTTCTTTCTTTC
1 TTTTT-CTTTTTTTTTTC
* *
8194098 TTTTTTTTTCTTTTTTTT
1 TTTTTCTTT-TTTTTTTC
8194116 TTTTTCTTTTTTTTTTC
1 TTTTTCTTTTTTTTTTC
8194133 ATTTTTC
1 -TTTTTC
8194140 ATCCATTGTT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
17 9 0.26
18 25 0.74
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (17 bp):
TTTTTCTTTTTTTTTTC
Found at i:8194138 original size:1 final size:1
Alignment explanation
Indices: 8194098--8194131 Score: 50
Period size: 1 Copynumber: 34.0 Consensus size: 1
8194088 TCTTTCTTTC
* *
8194098 TTTTTTTTTCTTTTTTTTTTTTTCTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
8194132 CATTTTTCAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.00, C:0.06, G:0.00, T:0.94
Consensus pattern (1 bp):
T
Found at i:8194138 original size:8 final size:7
Alignment explanation
Indices: 8194065--8194131 Score: 57
Period size: 7 Copynumber: 9.3 Consensus size: 7
8194055 TTTGAATCTC
8194065 TTTTCATT
1 TTTTC-TT
*
8194073 TTCTCATT
1 TTTTC-TT
8194081 TTTTCCTT
1 TTTT-CTT
*
8194089 CTTTCTT
1 TTTTCTT
8194096 TCTTT-TT
1 T-TTTCTT
8194103 TTTTCTT
1 TTTTCTT
*
8194110 TTTTTTT
1 TTTTCTT
8194117 TTTTCTT
1 TTTTCTT
8194124 TTTT-TT
1 TTTTCTT
8194130 TT
1 TT
8194132 CATTTTTCAT
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
6 7 0.14
7 24 0.48
8 18 0.36
9 1 0.02
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTCTT
Found at i:8198272 original size:60 final size:59
Alignment explanation
Indices: 8197971--8198441 Score: 688
Period size: 59 Copynumber: 8.0 Consensus size: 59
8197961 TCTTGTTCAG
* * **
8197971 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTG-AATTTTAATTTCGA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAATTTTATTTTTAA
* * *
8198028 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTTATTTTTTTGAAAATTTA---TTAG
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATAT-TTTTTTTGAAATTTTATTTTTAA
* *
8198085 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAT-CTTTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAATTTTATTTTTAA
*
8198143 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAATTTTATTTTTAA
*
8198202 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCTCTTTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATAT-TTTTTTTGAAATTTTATTTTTAA
* *
8198262 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCTTTTTTTTAAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAATTTTATTTTTAA
*
8198321 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTTGGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTT-GAAATTTT-ATTTTTAA
8198382 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTT-GAAATTTT-ATTTTTA
8198442 TTTAAAGAAA
Statistics
Matches: 383, Mismatches: 20, Indels: 18
0.91 0.05 0.04
Matches are distributed among these distances:
55 15 0.04
57 67 0.17
58 37 0.10
59 127 0.33
60 71 0.19
61 66 0.17
ACGTcount: A:0.33, C:0.12, G:0.08, T:0.47
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAATTTTATTTTTAA
Found at i:8198277 original size:119 final size:117
Alignment explanation
Indices: 8197971--8198441 Score: 700
Period size: 119 Copynumber: 4.0 Consensus size: 117
8197961 TCTTGTTCAG
* * *
8197971 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTG-AATTTTAATTTCGAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATCTTTTTTTGAAATTTTATTTTCAAGGAAAAT
* * *
8198035 TGATACTTTCAACTTTTCCTCAAAAATTTATTTTTTTGAAAATTTA---TTAG
66 TGATACTTTCAACTTTTCCTCAAAAATAT-TTTTTTTGAAATTTTATTTTTAA
*
8198085 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATCTTTTTTTGAAATTTTATTTTTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATCTTTTTTTGAAATTTTATTTTCAAGGAAAAT
*
8198150 TGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTATTTTTAA
66 TGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAATTTTATTTTTAA
* *
8198202 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCTCTTTTTTTGAAATTTTATTTTTAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA--TCTTTTTTTGAAATTTTATTTTCAAGGAAA
* *
8198267 ATTGATACTTTCAACTTTTCCTCAAAAATCTTTTTTTTAAAATTTTATTTTTAA
64 ATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAATTTTATTTTTAA
* *
8198321 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTTTCAAGGAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAT-CTTTTTTT-GAAATTTT-ATTTTCAAGGAA
8198386 AATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTTGGAAATTTTGATTTTTA
63 AATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTT-GAAATTTT-ATTTTTA
8198442 TTTAAAGAAA
Statistics
Matches: 328, Mismatches: 17, Indels: 16
0.91 0.05 0.04
Matches are distributed among these distances:
114 57 0.17
115 46 0.14
117 36 0.11
118 7 0.02
119 121 0.37
120 47 0.14
121 7 0.02
122 7 0.02
ACGTcount: A:0.33, C:0.12, G:0.08, T:0.47
Consensus pattern (117 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATCTTTTTTTGAAATTTTATTTTCAAGGAAAAT
TGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAATTTTATTTTTAA
Found at i:8198486 original size:27 final size:27
Alignment explanation
Indices: 8198449--8198542 Score: 75
Period size: 27 Copynumber: 3.3 Consensus size: 27
8198439 TTATTTAAAG
*
8198449 AAAATAGAATAAATAAAGAAATAAATA
1 AAAATAAAATAAATAAAGAAATAAATA
*
8198476 AAAATAAAAT--ATAAAGAAAGGTAAAACA
1 AAAATAAAATAAATAAAGAAA--T-AAATA
*
8198504 AAAATAAAAATAAGATAAAGATAAAAAATA
1 AAAAT-AAAATAA-ATAAAGA-AATAAATA
*
8198534 TTAAATAAA
1 -AAAATAAA
8198543 TCTAATCTAA
Statistics
Matches: 53, Mismatches: 5, Indels: 15
0.73 0.07 0.21
Matches are distributed among these distances:
25 9 0.17
27 10 0.19
28 9 0.17
29 5 0.09
30 7 0.13
31 4 0.08
32 7 0.13
33 2 0.04
ACGTcount: A:0.73, C:0.01, G:0.07, T:0.18
Consensus pattern (27 bp):
AAAATAAAATAAATAAAGAAATAAATA
Found at i:8198489 original size:17 final size:17
Alignment explanation
Indices: 8198459--8198530 Score: 56
Period size: 17 Copynumber: 4.2 Consensus size: 17
8198449 AAAATAGAAT
*
8198459 AAATAAAGAAATAAATAA
1 AAATAAA-ATATAAATAA
*
8198477 AAATAAAATATAAAGAA
1 AAATAAAATATAAATAA
** * *
8198494 AGGTAAAACAAAAATAA
1 AAATAAAATATAAATAA
*
8198511 AAATAAGATA-AAGATAA
1 AAATAAAATATAA-ATAA
8198528 AAA
1 AAA
8198531 ATATTAAATA
Statistics
Matches: 42, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
16 2 0.05
17 33 0.79
18 7 0.17
ACGTcount: A:0.75, C:0.01, G:0.08, T:0.15
Consensus pattern (17 bp):
AAATAAAATATAAATAA
Found at i:8198523 original size:28 final size:28
Alignment explanation
Indices: 8198457--8198529 Score: 76
Period size: 28 Copynumber: 2.6 Consensus size: 28
8198447 AGAAAATAGA
* * *
8198457 ATAAATAAAGAAATAAATAAAAATAAAAT
1 ATAAAGAAAGATA-AAACAAAAATAAAAT
*
8198486 ATAAAGAAAGGTAAAACAAAAATAAAA-
1 ATAAAGAAAGATAAAACAAAAATAAAAT
*
8198513 ATAAGATAAAGATAAAA
1 ATAA-AGAAAGATAAAA
8198530 AATATTAAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
27 4 0.11
28 23 0.62
29 10 0.27
ACGTcount: A:0.74, C:0.01, G:0.08, T:0.16
Consensus pattern (28 bp):
ATAAAGAAAGATAAAACAAAAATAAAAT
Found at i:8199634 original size:23 final size:24
Alignment explanation
Indices: 8199601--8199656 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
8199591 TATAAAAAAA
*
8199601 ATAATA-ATATAATAATAATACATAT
1 ATAATATATA-AATAA-ATTACATAT
8199626 ATAACTATATAAATAAATTACATAT
1 ATAA-TATATAAATAAATTACATAT
8199651 A-AATAT
1 ATAATAT
8199657 TAACAAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
23 3 0.11
24 2 0.07
25 13 0.46
26 7 0.25
27 3 0.11
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (24 bp):
ATAATATATAAATAAATTACATAT
Found at i:8199835 original size:20 final size:21
Alignment explanation
Indices: 8199810--8199848 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
8199800 GCTTACCCCA
8199810 TTTGGGCCAGG-CCCAATTGG
1 TTTGGGCCAGGACCCAATTGG
*
8199830 TTTGGGCCTGGACCCAATT
1 TTTGGGCCAGGACCCAATT
8199849 AGGTGTCTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.15, C:0.26, G:0.31, T:0.28
Consensus pattern (21 bp):
TTTGGGCCAGGACCCAATTGG
Done.