Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14313602
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 50000 characters in sequence are not A, C, G, or T
File 40 of 74
Found at i:8403497 original size:66 final size:65
Alignment explanation
Indices: 8403427--8403579 Score: 148
Period size: 66 Copynumber: 2.3 Consensus size: 65
8403417 GCTACCAATA
* * *
8403427 ATTTACTACTAAATTATCAATAATTTATTACATATTTATAAATGATTTATCCTTAAATTATGAAT
1 ATTTA-TACTAAATTATCAATAATTTATTACAAAGTTATAAATGATTTATCATTAAATTATGAAT
*
8403492 T
65 G
* * * * * * *
8403493 ATTTATCACTAAGTTA-CTGATAATTTATTATAAAGTTATAACTTATTTATTATTAATTTATGAA
1 ATTTAT-ACTAAATTATC-AATAATTTATTACAAAGTTATAAATGATTTATCATTAAATTATGAA
8403557 TG
64 TG
8403559 ATTTATTA-TAAAATTATCAAT
1 ATTTA-TACT-AAATTATCAAT
8403580 GATTAACTAA
Statistics
Matches: 69, Mismatches: 13, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
65 3 0.04
66 64 0.93
67 2 0.03
ACGTcount: A:0.41, C:0.07, G:0.05, T:0.48
Consensus pattern (65 bp):
ATTTATACTAAATTATCAATAATTTATTACAAAGTTATAAATGATTTATCATTAAATTATGAATG
Found at i:8403539 original size:44 final size:44
Alignment explanation
Indices: 8403481--8403575 Score: 113
Period size: 44 Copynumber: 2.2 Consensus size: 44
8403471 ATTTATCCTT
8403481 AAATTATGAA-TTATTTATCACTAAGTTACTG-ATAATTTATTATA
1 AAATTAT-AACTTATTTATCACTAAGTTA-TGAATAATTTATTATA
* * * * *
8403525 AAGTTATAACTTATTTATTATTAATTTATGAATGATTTATTATA
1 AAATTATAACTTATTTATCACTAAGTTATGAATAATTTATTATA
8403569 AAATTAT
1 AAATTAT
8403576 CAATGATTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
43 4 0.09
44 39 0.91
ACGTcount: A:0.41, C:0.04, G:0.06, T:0.48
Consensus pattern (44 bp):
AAATTATAACTTATTTATCACTAAGTTATGAATAATTTATTATA
Found at i:8403692 original size:22 final size:23
Alignment explanation
Indices: 8403653--8403710 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 23
8403643 ACGTTATTGG
* *
8403653 TGATTTACTACTAAATTATCA-A
1 TGATTTACTATTATATTATCATA
* *
8403675 TGATTTATTATTATATTATTATA
1 TGATTTACTATTATATTATCATA
8403698 T-ATTTACTATTAT
1 TGATTTACTATTAT
8403711 GTCATAATTG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
22 28 0.93
23 2 0.07
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.53
Consensus pattern (23 bp):
TGATTTACTATTATATTATCATA
Found at i:8403825 original size:21 final size:22
Alignment explanation
Indices: 8403800--8403905 Score: 71
Period size: 22 Copynumber: 5.0 Consensus size: 22
8403790 CATTACCAAG
8403800 TTATCATTAATTTA-TATTACA-
1 TTATCATTAATTTACTATTA-AT
8403821 TTATCCA--AATTTACTATTAAT
1 TTAT-CATTAATTTACTATTAAT
* * * *
8403842 TTATCATTGATTAACAATTAAG
1 TTATCATTAATTTACTATTAAT
* * *
8403864 TTATTGA-TGATTTACTATTAAA
1 TTA-TCATTAATTTACTATTAAT
*
8403886 TTAT-ATTAATTTACTTTTAA
1 TTATCATTAATTTACTATTAA
8403906 CGTAATGAGT
Statistics
Matches: 68, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
20 10 0.15
21 26 0.38
22 30 0.44
23 2 0.03
ACGTcount: A:0.38, C:0.08, G:0.04, T:0.50
Consensus pattern (22 bp):
TTATCATTAATTTACTATTAAT
Found at i:8404043 original size:22 final size:22
Alignment explanation
Indices: 8404018--8404122 Score: 95
Period size: 22 Copynumber: 4.8 Consensus size: 22
8404008 AATAAAATTG
*
8404018 ATTTATTATTAAATTATCACTA
1 ATTTATTATTAAGTTATCACTA
* * *
8404040 ATTTACTATTAAGTTATTATTA
1 ATTTATTATTAAGTTATCACTA
* *
8404062 ATTTATTATTAAGTTATCAATG
1 ATTTATTATTAAGTTATCACTA
* * * *
8404084 ATTAACTATTAAGTTGTCACTT
1 ATTTATTATTAAGTTATCACTA
*
8404106 ATTT-TTCATTAAATTAT
1 ATTTATT-ATTAAGTTAT
8404123 TCTTGATTTA
Statistics
Matches: 65, Mismatches: 17, Indels: 2
0.77 0.20 0.02
Matches are distributed among these distances:
21 1 0.02
22 64 0.98
ACGTcount: A:0.36, C:0.08, G:0.05, T:0.51
Consensus pattern (22 bp):
ATTTATTATTAAGTTATCACTA
Found at i:8404051 original size:44 final size:44
Alignment explanation
Indices: 8403998--8404095 Score: 115
Period size: 44 Copynumber: 2.2 Consensus size: 44
8403988 TATTAATTAA
* *
8403998 TTACTATTAAAATAAAATTGATTTATTATTAAATTATCACTAAT
1 TTACTATTAAAATAAAATTAATTTATTATTAAATTATCAATAAT
** ** * *
8404042 TTACTATTAAGTTATTATTAATTTATTATTAAGTTATCAATGAT
1 TTACTATTAAAATAAAATTAATTTATTATTAAATTATCAATAAT
*
8404086 TAACTATTAA
1 TTACTATTAA
8404096 GTTGTCACTT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.42, C:0.06, G:0.04, T:0.48
Consensus pattern (44 bp):
TTACTATTAAAATAAAATTAATTTATTATTAAATTATCAATAAT
Found at i:8404062 original size:11 final size:11
Alignment explanation
Indices: 8404020--8404078 Score: 64
Period size: 11 Copynumber: 5.4 Consensus size: 11
8404010 TAAAATTGAT
*
8404020 TTATTATTAAA
1 TTATTATTAAG
* * *
8404031 TTATCACTAAT
1 TTATTATTAAG
*
8404042 TTACTATTAAG
1 TTATTATTAAG
*
8404053 TTATTATTAAT
1 TTATTATTAAG
8404064 TTATTATTAAG
1 TTATTATTAAG
8404075 TTAT
1 TTAT
8404079 CAATGATTAA
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 38 1.00
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.54
Consensus pattern (11 bp):
TTATTATTAAG
Found at i:8404117 original size:44 final size:44
Alignment explanation
Indices: 8404018--8404122 Score: 124
Period size: 44 Copynumber: 2.4 Consensus size: 44
8404008 AATAAAATTG
* * *
8404018 ATTTATTATTAAATTATCACTAATTTACTATTAAGTTATTATTA
1 ATTTATTATTAAATTATCAATAATTAACTATTAAGTTATCATTA
* * *
8404062 ATTTATTATTAAGTTATCAATGATTAACTATTAAGTTGTCACTT-
1 ATTTATTATTAAATTATCAATAATTAACTATTAAGTTATCA-TTA
8404106 ATTT-TTCATTAAATTAT
1 ATTTATT-ATTAAATTAT
8404123 TCTTGATTTA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
43 2 0.04
44 48 0.92
45 2 0.04
ACGTcount: A:0.36, C:0.08, G:0.05, T:0.51
Consensus pattern (44 bp):
ATTTATTATTAAATTATCAATAATTAACTATTAAGTTATCATTA
Found at i:8404197 original size:22 final size:22
Alignment explanation
Indices: 8404172--8404258 Score: 70
Period size: 22 Copynumber: 4.0 Consensus size: 22
8404162 ATTACAATTA
8404172 ATTTATTACTAAATTATTA-TG
1 ATTTATTACTAAATTATTATTG
* * *
8404193 CATTTACTATTATATTATTATTG
1 -ATTTATTACTAAATTATTATTG
* *
8404216 ATTTATTACTAAGTTATCAATT-
1 ATTTATTACTAAATTAT-TATTG
* * *
8404238 ATTGACTATTAAATTATTATT
1 ATTTATTACTAAATTATTATT
8404259 CATATATTGA
Statistics
Matches: 50, Mismatches: 13, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
21 3 0.06
22 42 0.84
23 5 0.10
ACGTcount: A:0.36, C:0.07, G:0.05, T:0.53
Consensus pattern (22 bp):
ATTTATTACTAAATTATTATTG
Found at i:8404246 original size:44 final size:44
Alignment explanation
Indices: 8404150--8404329 Score: 133
Period size: 44 Copynumber: 4.2 Consensus size: 44
8404140 CTTGTTATGC
* ** * * * *
8404150 ATTTACAATTATATTACAATTAATTTATTACTAAATTAT-TATGC
1 ATTTACTATTATATTATTATTGATTTATTACTAAGTTATCAAT-A
*
8404194 ATTTACTATTATATTATTATTGATTTATTACTAAGTTATCAATT
1 ATTTACTATTATATTATTATTGATTTATTACTAAGTTATCAATA
* * * * *
8404238 ATTGACTATTAAATTATTATTCATATATTGA-T---TTATGC-ATG
1 ATTTACTATTATATTATTATTGATTTATT-ACTAAGTTAT-CAATA
* *
8404279 ATTTACTATTA-AGTTATTATTGATTAATTATTAAGTTATCAATA
1 ATTTACTATTATA-TTATTATTGATTTATTACTAAGTTATCAATA
8404323 A-TTACTA
1 ATTTACTA
8404330 CTAAGTTATA
Statistics
Matches: 110, Mismatches: 17, Indels: 19
0.75 0.12 0.13
Matches are distributed among these distances:
40 2 0.02
41 30 0.27
42 1 0.01
43 7 0.06
44 67 0.61
45 3 0.03
ACGTcount: A:0.37, C:0.07, G:0.06, T:0.50
Consensus pattern (44 bp):
ATTTACTATTATATTATTATTGATTTATTACTAAGTTATCAATA
Found at i:8404295 original size:22 final size:21
Alignment explanation
Indices: 8404185--8404338 Score: 59
Period size: 22 Copynumber: 7.2 Consensus size: 21
8404175 TATTACTAAA
*
8404185 TTATTATGCATTTACTATTATA-
1 TTATCATG-ATTTACTATTA-AG
* * *
8404207 TTATTATTGATTTATTACTAAG
1 TTATCA-TGATTTACTATTAAG
* * *
8404229 TTATCAATTATTGACTATTAAA
1 TTATC-ATGATTTACTATTAAG
* *
8404251 TTAT--T-ATTCATA-TATTGAT
1 TTATCATGATT--TACTATTAAG
8404270 TTATGCATGATTTACTATTAAG
1 TTAT-CATGATTTACTATTAAG
* * *
8404292 TTATTATTGATTAATTATTAAG
1 TTATCA-TGATTTACTATTAAG
* *
8404314 TTATCAAT-AATTACTACTAAG
1 TTATC-ATGATTTACTATTAAG
8404335 TTAT
1 TTAT
8404339 ACTGATTACT
Statistics
Matches: 99, Mismatches: 21, Indels: 25
0.68 0.14 0.17
Matches are distributed among these distances:
18 3 0.03
19 10 0.10
20 1 0.01
21 17 0.17
22 61 0.62
23 7 0.07
ACGTcount: A:0.35, C:0.07, G:0.07, T:0.51
Consensus pattern (21 bp):
TTATCATGATTTACTATTAAG
Found at i:8404924 original size:24 final size:23
Alignment explanation
Indices: 8404897--8404941 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
8404887 AAAAATTTAC
*
8404897 TAAATAAAATTTAATAAAAATAAA
1 TAAACAAAATTTAA-AAAAATAAA
* *
8404921 TAAACAATATTTTAAAAAATA
1 TAAACAAAATTTAAAAAAATA
8404942 TTAAGTTTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 7 0.39
24 11 0.61
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (23 bp):
TAAACAAAATTTAAAAAAATAAA
Found at i:8406400 original size:16 final size:17
Alignment explanation
Indices: 8406381--8406425 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 17
8406371 AAAATATCTT
*
8406381 TTATTTAAAAATTTT-A
1 TTATATAAAAATTTTGA
* *
8406397 TTATACATAAATTTTGA
1 TTATATAAAAATTTTGA
8406414 TTATATAAAAAT
1 TTATATAAAAAT
8406426 ATCACAATAC
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
16 12 0.52
17 11 0.48
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (17 bp):
TTATATAAAAATTTTGA
Found at i:8410980 original size:21 final size:22
Alignment explanation
Indices: 8410947--8410996 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 22
8410937 TTAAAGTTTC
8410947 GAATTTAAGTTTTATTGTAT-TT
1 GAATTT-AGTTTTATTGTATGTT
*
8410969 GAATTTAGTTTTATTTTATGTT
1 GAATTTAGTTTTATTGTATGTT
8410991 -AATTTA
1 GAATTTA
8410997 TTTATTTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 18 0.69
22 8 0.31
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (22 bp):
GAATTTAGTTTTATTGTATGTT
Found at i:8413220 original size:19 final size:19
Alignment explanation
Indices: 8413198--8413258 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 19
8413188 GATAATTATT
8413198 TTTAATTCATAAGATTAAA
1 TTTAATTCATAAGATTAAA
* * **
8413217 TTTAAAT-ATCCA-ATTATT
1 TTTAATTCAT-AAGATTAAA
8413235 TTTAATTCATAAGATTAAA
1 TTTAATTCATAAGATTAAA
*
8413254 CTTAA
1 TTTAA
8413259 ACATCCAATT
Statistics
Matches: 30, Mismatches: 9, Indels: 6
0.67 0.20 0.13
Matches are distributed among these distances:
18 13 0.43
19 17 0.57
ACGTcount: A:0.44, C:0.08, G:0.03, T:0.44
Consensus pattern (19 bp):
TTTAATTCATAAGATTAAA
Found at i:8413233 original size:37 final size:37
Alignment explanation
Indices: 8413191--8413270 Score: 142
Period size: 37 Copynumber: 2.2 Consensus size: 37
8413181 AAATGAAGAT
* *
8413191 AATTATTTTTAATTCATAAGATTAAATTTAAATATCC
1 AATTATTTTTAATTCATAAGATTAAACTTAAACATCC
8413228 AATTATTTTTAATTCATAAGATTAAACTTAAACATCC
1 AATTATTTTTAATTCATAAGATTAAACTTAAACATCC
8413265 AATTAT
1 AATTAT
8413271 ACCTTTAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.44, C:0.10, G:0.03, T:0.44
Consensus pattern (37 bp):
AATTATTTTTAATTCATAAGATTAAACTTAAACATCC
Found at i:8421751 original size:33 final size:34
Alignment explanation
Indices: 8421709--8421777 Score: 88
Period size: 34 Copynumber: 2.1 Consensus size: 34
8421699 TGGAAATGAT
* *
8421709 CATATGGCCCTA-CTAACA-AGTTATAGTAGTTAG
1 CATAAGGCCCTAGCTAACAGA-TTATAATAGTTAG
*
8421742 CATAAGGCCCTAGCTAGCAGATTATAATAGTTAG
1 CATAAGGCCCTAGCTAACAGATTATAATAGTTAG
8421776 CA
1 CA
8421778 ATGATAATGA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
33 11 0.35
34 19 0.61
35 1 0.03
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (34 bp):
CATAAGGCCCTAGCTAACAGATTATAATAGTTAG
Found at i:8421878 original size:16 final size:16
Alignment explanation
Indices: 8421853--8421885 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
8421843 TGATAAAAAA
8421853 ATGATAATGATGATTT
1 ATGATAATGATGATTT
*
8421869 ATGATGATGATGATTT
1 ATGATAATGATGATTT
8421885 A
1 A
8421886 CAATAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.21, T:0.42
Consensus pattern (16 bp):
ATGATAATGATGATTT
Found at i:8426979 original size:16 final size:16
Alignment explanation
Indices: 8426947--8426980 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8426937 ATGAATGTTA
**
8426947 ATGATGATTTATGATG
1 ATGATGATTTACAATG
8426963 ATGATGATTTACAATG
1 ATGATGATTTACAATG
8426979 AT
1 AT
8426981 TTTTAATAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.03, G:0.21, T:0.41
Consensus pattern (16 bp):
ATGATGATTTACAATG
Found at i:8444410 original size:15 final size:17
Alignment explanation
Indices: 8444386--8444437 Score: 58
Period size: 15 Copynumber: 3.3 Consensus size: 17
8444376 TTTTTTTCGA
8444386 ATTTTATAATT-TTTAT
1 ATTTTATAATTATTTAT
*
8444402 -TTTTTTAATTATTTAT
1 ATTTTATAATTATTTAT
*
8444418 ATTTTA-AGTTATTT-T
1 ATTTTATAATTATTTAT
8444433 ATTTT
1 ATTTT
8444438 CATTAAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
15 15 0.48
16 12 0.39
17 4 0.13
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (17 bp):
ATTTTATAATTATTTAT
Found at i:8444429 original size:16 final size:14
Alignment explanation
Indices: 8444404--8444442 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
8444394 ATTTTTATTT
8444404 TTTTAATTATTTATA
1 TTTTAATTATTT-TA
8444419 TTTTAAGTTATTTTA
1 TTTTAA-TTATTTTA
*
8444434 TTTTCATTA
1 TTTTAATTA
8444443 AAAAATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 3 0.14
15 13 0.59
16 6 0.27
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (14 bp):
TTTTAATTATTTTA
Found at i:8444669 original size:88 final size:88
Alignment explanation
Indices: 8444508--8444681 Score: 244
Period size: 88 Copynumber: 2.0 Consensus size: 88
8444498 GTTGGAAAGA
* ** * *
8444508 TGTCTAAATATAACTTTTTGGGAATTCTTTTAATATATTTTTAATTTCTTTGTTAATTATATTTT
1 TGTCAAAATATAACTTTTTGAAAATTCTTTTAATATATTTTTAAATTCTTTATTAATTATATTTT
*
8444573 AAATTATTTTATTTTGATTAATG
66 AAATTATTTTATTTTCATTAATG
*
8444596 TGTCAAAATATATCTTCTTTGAAAATTCTTTTAATATATTTTTAAATT-TTTATT-ATTAATATT
1 TGTCAAAATATAACTT-TTTGAAAATTCTTTTAATATATTTTTAAATTCTTTATTAATT-ATATT
*
8444659 TTAAGTTATTTTATTTTCATTAA
64 TTAAATTATTTTATTTTCATTAA
8444682 AGGGTAAAAT
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
87 3 0.04
88 45 0.59
89 28 0.37
ACGTcount: A:0.32, C:0.05, G:0.06, T:0.57
Consensus pattern (88 bp):
TGTCAAAATATAACTTTTTGAAAATTCTTTTAATATATTTTTAAATTCTTTATTAATTATATTTT
AAATTATTTTATTTTCATTAATG
Found at i:8447551 original size:14 final size:14
Alignment explanation
Indices: 8447528--8447561 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
8447518 ATTCATATAA
8447528 TAAAATTC-AATTT
1 TAAAATTCAAATTT
8447541 TAAAATCTCAAATTT
1 TAAAAT-TCAAATTT
8447556 TAAAAT
1 TAAAAT
8447562 ATTCGTGCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 2 0.11
15 11 0.58
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (14 bp):
TAAAATTCAAATTT
Found at i:8449256 original size:215 final size:214
Alignment explanation
Indices: 8448843--8449256 Score: 485
Period size: 215 Copynumber: 1.9 Consensus size: 214
8448833 GTTTTTGAAG
* * *
8448843 AAAAAAGGAATTTTTATTATATTGAAGATTTTTTATAAATATTCCAATACATTAGTAATATTTAA
1 AAAAAAGAAATTTTTATTATATTGAAAAATTTTTATAAATATTCCAATACATTAGTAATATTTAA
* * * ** * *
8448908 AAAAAATCTTCTCACTTAGGGATTTCTTAAAGCATCTTTACTCGGAATACTTTTAGAATCCCATC
66 AAAAAATCTTCTCACCTAGAGATTTCATAAAGCATCACTACTCAGAATACCTTTAGAATCCCATC
* * * **
8448973 ATCAGATAAAATTTTCTTTTTTCTTATTTTCTAACACTTTATTCTTAATTTATTAGTTAATTTTT
131 ATCAGATAAAAATTTCTCTTTTCTTATTTTCTAACACTTTATTATTAATTTATTAGTTAAAGTTT
8449038 ATTTACTATTTTATAACAA
196 ATTTACTATTTTATAACAA
* * * * *
8449057 AAAAAAGAAAATTTTTATTGTATTGAAAAATTTTTATAAATATTTCAATATATTGGTAGTATTTA
1 AAAAAAG-AAATTTTTATTATATTGAAAAATTTTTATAAATATTCCAATACATTAGTAATATTTA
* * *
8449122 AAAAAAATCTTCTCACCTAGAGATTTCAT-AGGTATCACTACTCAGAATACCTTT-GAATCTCAT
65 AAAAAAATCTTCTCACCTAGAGATTTCATAAAGCATCACTACTCAGAATACCTTTAGAATCCCAT
** * ** * *
8449185 TGTCAGATAAAAATTTC-CTTTTCTTACATTTTTTATTACTTTA-TATTATTATTATTATTATAA
130 CATCAGATAAAAATTTCTCTTTTCTT--ATTTTCTAACACTTTATTATTAAT-TTATTAGT-TAA
8449248 AGTTTATTT
191 AGTTTATTT
8449257 TTATTTTTTA
Statistics
Matches: 165, Mismatches: 30, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
212 7 0.04
213 27 0.16
214 46 0.28
215 85 0.52
ACGTcount: A:0.36, C:0.11, G:0.07, T:0.45
Consensus pattern (214 bp):
AAAAAAGAAATTTTTATTATATTGAAAAATTTTTATAAATATTCCAATACATTAGTAATATTTAA
AAAAAATCTTCTCACCTAGAGATTTCATAAAGCATCACTACTCAGAATACCTTTAGAATCCCATC
ATCAGATAAAAATTTCTCTTTTCTTATTTTCTAACACTTTATTATTAATTTATTAGTTAAAGTTT
ATTTACTATTTTATAACAA
Found at i:8449270 original size:20 final size:21
Alignment explanation
Indices: 8449230--8449277 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
8449220 TTACTTTATA
*
8449230 TTATTATTATTATTATAAAGT
1 TTATTTTTATTATTATAAAGT
*
8449251 TTATTTTTATT-TTTTAAAGT
1 TTATTTTTATTATTATAAAGT
8449271 TTATTTT
1 TTATTTT
8449278 AAATTAACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (21 bp):
TTATTTTTATTATTATAAAGT
Found at i:8449654 original size:41 final size:41
Alignment explanation
Indices: 8449595--8449682 Score: 140
Period size: 41 Copynumber: 2.1 Consensus size: 41
8449585 ATTGGAAGAT
** *
8449595 GGGTTGTCGAGTTGGGTGCATGGACCCTGGGTCGGGTCGAC
1 GGGTTGTCGAGTCAGGTGCATGGACCCTGGGTCGGGTCAAC
*
8449636 GGGTTGTCGAGTCAGGTGCATGGACCTTGGGTCGGGTCAAC
1 GGGTTGTCGAGTCAGGTGCATGGACCCTGGGTCGGGTCAAC
8449677 GGGTTG
1 GGGTTG
8449683 GCGTGTGGAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.11, C:0.18, G:0.45, T:0.25
Consensus pattern (41 bp):
GGGTTGTCGAGTCAGGTGCATGGACCCTGGGTCGGGTCAAC
Found at i:8450523 original size:5 final size:5
Alignment explanation
Indices: 8450515--8450549 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
8450505 AATTTAACAA
*
8450515 AAAAT AAAAT AAACT AAAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT -AAAAT AAAAT AAAAT AAAA
8450550 AATAGGTTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
5 23 0.85
6 4 0.15
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:8450550 original size:17 final size:17
Alignment explanation
Indices: 8450513--8450553 Score: 66
Period size: 16 Copynumber: 2.5 Consensus size: 17
8450503 TTAATTTAAC
*
8450513 AAAAAATAAAATAAACT
1 AAAAAATAAAATAAAAT
8450530 -AAAAATAAAATAAAAT
1 AAAAAATAAAATAAAAT
8450546 AAAAAATA
1 AAAAAATA
8450554 GGTTGGGCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 15 0.68
17 7 0.32
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.17
Consensus pattern (17 bp):
AAAAAATAAAATAAAAT
Found at i:8450621 original size:28 final size:28
Alignment explanation
Indices: 8450589--8450648 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
8450579 CTTAAGACCC
* *
8450589 AATTAAAATCAAACTTTAGGCCTAGTTG
1 AATTAAAATCAAACTTGAAGCCTAGTTG
* *
8450617 AATTAAAATCGAGCTTGAAGCCTAGTTG
1 AATTAAAATCAAACTTGAAGCCTAGTTG
8450645 AATT
1 AATT
8450649 GAATTTAGGC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (28 bp):
AATTAAAATCAAACTTGAAGCCTAGTTG
Found at i:8457357 original size:19 final size:19
Alignment explanation
Indices: 8457333--8457372 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
8457323 ATGGGTTATA
*
8457333 ATTATAAT-TAATAATTGTT
1 ATTATAATCGAATAATT-TT
8457352 ATTATAATCGAATAATTTT
1 ATTATAATCGAATAATTTT
8457371 AT
1 AT
8457373 ACATCACATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (19 bp):
ATTATAATCGAATAATTTT
Found at i:8460152 original size:16 final size:16
Alignment explanation
Indices: 8460106--8460187 Score: 76
Period size: 16 Copynumber: 5.0 Consensus size: 16
8460096 GATTTTGGGG
* *
8460106 AGGGTTTTTGGGATTTA
1 AGGGATTTT-GGATTTT
* *
8460123 AGGG-TTTCGAATTTT
1 AGGGATTTTGGATTTT
8460138 AGGGATTTTGGATTTTT
1 AGGGATTTTGGA-TTTT
*
8460155 AGTGGGTTTTGGATTTT
1 AG-GGATTTTGGATTTT
*
8460172 AGAGATTTTGGATTTT
1 AGGGATTTTGGATTTT
8460188 GGGTTTTAGA
Statistics
Matches: 54, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
15 9 0.17
16 20 0.37
17 16 0.30
18 9 0.17
ACGTcount: A:0.18, C:0.01, G:0.30, T:0.50
Consensus pattern (16 bp):
AGGGATTTTGGATTTT
Found at i:8460166 original size:18 final size:17
Alignment explanation
Indices: 8460134--8460187 Score: 74
Period size: 17 Copynumber: 3.2 Consensus size: 17
8460124 GGGTTTCGAA
8460134 TTTTAGGGATTTTGGAT
1 TTTTAGGGATTTTGGAT
*
8460151 TTTTAGTGGGTTTTGGA-
1 TTTTAG-GGATTTTGGAT
*
8460168 TTTTAGAGATTTTGGAT
1 TTTTAGGGATTTTGGAT
8460185 TTT
1 TTT
8460188 GGGTTTTAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 8 0.25
17 15 0.47
18 9 0.28
ACGTcount: A:0.17, C:0.00, G:0.28, T:0.56
Consensus pattern (17 bp):
TTTTAGGGATTTTGGAT
Found at i:8461296 original size:15 final size:15
Alignment explanation
Indices: 8461276--8461309 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8461266 ACTATTTGTT
* *
8461276 TTTTTTTTGTTTTTG
1 TTTTTTATGTTTCTG
8461291 TTTTTTATGTTTCTG
1 TTTTTTATGTTTCTG
8461306 TTTT
1 TTTT
8461310 CGTGGTTGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.03, C:0.03, G:0.12, T:0.82
Consensus pattern (15 bp):
TTTTTTATGTTTCTG
Found at i:8461749 original size:17 final size:18
Alignment explanation
Indices: 8461721--8461766 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
8461711 TATTTATATA
8461721 ATTAATAATTATTATT-TT
1 ATTAA-AATTATTATTATT
*
8461739 TTTAAAATTATTATTATT
1 ATTAAAATTATTATTATT
8461757 ATTAAAATTA
1 ATTAAAATTA
8461767 AAACAGTAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 10 0.40
18 15 0.60
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTAAAATTATTATTATT
Found at i:8462066 original size:22 final size:22
Alignment explanation
Indices: 8462036--8462078 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8462026 CCGTAAGTTA
* *
8462036 AAATTATGCCCTAAGGTCTTAC
1 AAATCATGCCCGAAGGTCTTAC
*
8462058 AAATCATGCCCGGAGGTCTTA
1 AAATCATGCCCGAAGGTCTTA
8462079 TAGAATCGAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (22 bp):
AAATCATGCCCGAAGGTCTTAC
Found at i:8462275 original size:109 final size:109
Alignment explanation
Indices: 8462009--8462293 Score: 322
Period size: 110 Copynumber: 2.6 Consensus size: 109
8461999 GGTCTTACAA
* * * * * ** *
8462009 AATCGATTGAGATAATACCGTAAGTTAAAATTATGCCCTAAGGTCTTACAAATCATGCCCGGAGG
1 AATCGATCGGGATAACACCGTAAATCAAAATTATGCCCGGAGGTCTTAGAAATCATG-CCGGAGG
* * * * *
8462074 TCTTATAGAATCGATTGAAATAACATCACAAGTCAAAAGATAAAG
65 TCTTACAAAATCAATAGAAATAACACCACAAGTCAAAAGATAAAG
* *
8462119 AATCGATCGGGATAACACCGTAAATCAAAATTATGTCTGGAGGTCTTAGAAATCATGCTCGGAGG
1 AATCGATCGGGATAACACCGTAAATCAAAATTATGCCCGGAGGTCTTAGAAATCATGC-CGGAGG
* * * *
8462184 TCTTACAAAATTAACTAG-GATAACACCGCAAGTCAGAA-ATAAAG
65 TCTTACAAAATCAA-TAGAAATAACACCACAAGTCAAAAGATAAAG
* * *
8462228 AATCGATCGGGATAACATCGTGAATCAAAATTATGCCCGGAGATCTTAGAAATCATGCCTGGAGG
1 AATCGATCGGGATAACACCGTAAATCAAAATTATGCCCGGAGGTCTTAGAAATCATGCC-GGAGG
8462293 T
65 T
8462294 TTTATAGAAT
Statistics
Matches: 148, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
108 1 0.01
109 66 0.45
110 79 0.53
111 2 0.01
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (109 bp):
AATCGATCGGGATAACACCGTAAATCAAAATTATGCCCGGAGGTCTTAGAAATCATGCCGGAGGT
CTTACAAAATCAATAGAAATAACACCACAAGTCAAAAGATAAAG
Found at i:8462459 original size:23 final size:23
Alignment explanation
Indices: 8462414--8462459 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
8462404 AATCAAATTT
*
8462414 ATGCTCAGAGGTCTTAGAAAATC
1 ATGCTCAGAGGTCTTACAAAATC
* *
8462437 ATGCTCGGAGGTCTTACATAATC
1 ATGCTCAGAGGTCTTACAAAATC
8462460 GATTGAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (23 bp):
ATGCTCAGAGGTCTTACAAAATC
Found at i:8462478 original size:111 final size:111
Alignment explanation
Indices: 8462331--8462659 Score: 398
Period size: 111 Copynumber: 3.0 Consensus size: 111
8462321 TAGAATTGCC
* *
8462331 CGGAGGTCTTGCAGAATCAATTGAAATAACATCACAAGTCAAAAAATAAAAAATCGATCGGGATA
1 CGGAGGTCTTACAGAATCAATTGAAATAACATCACAAGTCAAAAAATAAAGAATCGATCGGGATA
8462396 ACATCGTGAATCAAATTTATGCTC-AGAGGTCTTAGAAAATCATGCT
66 ACATCGTGAATCAAATTTATGCTCGA-AGGTCTTAGAAAATCATGCT
* * * * * *
8462442 CGGAGGTCTTACATAATCGATTGAAATAACACCACAAGTTAAAAGATAAAGAATCGATCAGGATA
1 CGGAGGTCTTACAGAATCAATTGAAATAACATCACAAGTCAAAAAATAAAGAATCGATCGGGATA
**
8462507 ACATCACGAATCAAATTTATGCTCGAAGGTCTTAG-AAATCATGCT
66 ACATCGTGAATCAAATTTATGCTCGAAGGTCTTAGAAAATCATGCT
* ** ** ** * * * * *
8462552 CTGAGGTCTTACAGAATTTATTGGGATAACATTGCAAGTC-AAAAATAGAGAATCAATTGGAACA
1 CGGAGGTCTTACAGAATCAATTGAAATAACATCACAAGTCAAAAAATAAAGAATCGATCGGGATA
*
8462616 ACATCGTTAATCGAAA-TTATGCTCGAAGGTCTTA-AAAATCATGC
66 ACATCGTGAATC-AAATTTATGCTCGAAGGTCTTAGAAAATCATGC
8462660 CTGAAAGTTT
Statistics
Matches: 185, Mismatches: 30, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
109 53 0.29
110 43 0.23
111 88 0.48
112 1 0.01
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.26
Consensus pattern (111 bp):
CGGAGGTCTTACAGAATCAATTGAAATAACATCACAAGTCAAAAAATAAAGAATCGATCGGGATA
ACATCGTGAATCAAATTTATGCTCGAAGGTCTTAGAAAATCATGCT
Found at i:8462695 original size:23 final size:23
Alignment explanation
Indices: 8462629--8462717 Score: 76
Period size: 23 Copynumber: 4.0 Consensus size: 23
8462619 TCGTTAATCG
* *
8462629 AAATTATGCTCGAAGGTCTTA-A
1 AAATCATGCCCGAAGGTCTTACA
* * *
8462651 AAATCATGCCTGAAAGTTTTACA
1 AAATCATGCCCGAAGGTCTTACA
*
8462674 AAATCATGCCCGGAGGTCTTACA
1 AAATCATGCCCGAAGGTCTTACA
* **
8462697 GAAT--TGTTCGAAGGTCTTACA
1 AAATCATGCCCGAAGGTCTTACA
8462718 GAATTGTTCG
Statistics
Matches: 53, Mismatches: 13, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
21 14 0.26
22 16 0.30
23 23 0.43
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (23 bp):
AAATCATGCCCGAAGGTCTTACA
Found at i:8462712 original size:21 final size:21
Alignment explanation
Indices: 8462687--8462727 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
8462677 TCATGCCCGG
8462687 AGGTCTTACAGAATTGTTCGA
1 AGGTCTTACAGAATTGTTCGA
8462708 AGGTCTTACAGAATTGTTCG
1 AGGTCTTACAGAATTGTTCG
8462728 GGATAATATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (21 bp):
AGGTCTTACAGAATTGTTCGA
Found at i:8463240 original size:41 final size:41
Alignment explanation
Indices: 8463153--8463259 Score: 119
Period size: 41 Copynumber: 2.6 Consensus size: 41
8463143 TTTTCTGAGG
* *
8463153 ATGGTTCCT-TCTAAACAGAAGCTTTGAAATCTTGATTGAAA
1 ATGGTTCCTCT-TAAACAGAGGCTTTGAAATCTTAATTGAAA
* *
8463194 TTGGTTCCTCTTAAATAGAGGCTTTGAAATCTTAATT-AAGA
1 ATGGTTCCTCTTAAACAGAGGCTTTGAAATCTTAATTGAA-A
* * *
8463235 ATGGTTCTTCCTAAACAGAGACTTT
1 ATGGTTCCTCTTAAACAGAGGCTTT
8463260 AAAACTTTAA
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
40 2 0.04
41 52 0.95
42 1 0.02
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (41 bp):
ATGGTTCCTCTTAAACAGAGGCTTTGAAATCTTAATTGAAA
Found at i:8463639 original size:41 final size:41
Alignment explanation
Indices: 8463561--8463640 Score: 99
Period size: 41 Copynumber: 2.0 Consensus size: 41
8463551 TCTTATACAA
* * * *
8463561 ATGCCAATGCAAGTGATGCAAATACGAATGTCTTTCTTGTG
1 ATGCAAATGCAAGCGATGCAAATACGAAAGACTTTCTTGTG
*
8463602 ATGCAAATGCAAGCGATGCAAATGC-AAAGACTCTTCTTG
1 ATGCAAATGCAAGCGATGCAAATACGAAAGACT-TTCTTG
8463641 CCCCTCTTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
40 5 0.15
41 28 0.85
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (41 bp):
ATGCAAATGCAAGCGATGCAAATACGAAAGACTTTCTTGTG
Found at i:8466887 original size:25 final size:25
Alignment explanation
Indices: 8466853--8466903 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
8466843 GAAACTTGAG
8466853 GCTTTGAATTTTGATGGAATAACAA
1 GCTTTGAATTTTGATGGAATAACAA
8466878 GCTTTGAATTTTGATGGAATAACAA
1 GCTTTGAATTTTGATGGAATAACAA
8466903 G
1 G
8466904 ATTAGGTACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (25 bp):
GCTTTGAATTTTGATGGAATAACAA
Found at i:8470351 original size:31 final size:31
Alignment explanation
Indices: 8470311--8470381 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
8470301 AATTTCCAGA
* * ** *
8470311 TTCCCGCGAAAATTCCGACGAAGTTTGAATT
1 TTCCGGCGAAAATTCCGACCAACATTGAAGT
*
8470342 TTCCGGCGAAAATTCCGGCCAACATTGAAGT
1 TTCCGGCGAAAATTCCGACCAACATTGAAGT
8470373 TTCCGGCGA
1 TTCCGGCGA
8470382 CCTGCCCAGT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (31 bp):
TTCCGGCGAAAATTCCGACCAACATTGAAGT
Found at i:8470837 original size:28 final size:26
Alignment explanation
Indices: 8470792--8470863 Score: 72
Period size: 28 Copynumber: 2.6 Consensus size: 26
8470782 CGCTCCAGGT
* * *
8470792 TTTTTTTTTTTTTTTTTCCTTTGAATTA
1 TTTTATTTTATTTATTT-CTTTG-ATTA
*
8470820 TTTTATTTTATTTATTTCTTTGTTTA
1 TTTTATTTTATTTATTTCTTTGATTA
8470846 TTTTAATTTTTATTTATT
1 TTTT-A-TTTTATTTATT
8470864 AGATTAGGTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
26 7 0.18
27 6 0.16
28 25 0.66
ACGTcount: A:0.15, C:0.04, G:0.03, T:0.78
Consensus pattern (26 bp):
TTTTATTTTATTTATTTCTTTGATTA
Found at i:8470996 original size:59 final size:59
Alignment explanation
Indices: 8470936--8471339 Score: 549
Period size: 59 Copynumber: 6.8 Consensus size: 59
8470926 AAATAAAAAA
8470936 TTCCAAAAAAATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAT
1 TTCCAAAAAAA-ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAT
* *
8470996 TTCC--AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAATAAAT
1 TTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAT
*
8471053 TTCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAGAAAAATAAAT
1 TTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT---AG--AAATAAAT
8471117 TTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATCGAAAT
1 TTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAAT--AAAT
*
8471178 TTCC--AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAT
1 TTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAT
* ** *
8471235 TTTCAAAAAAAAGGGTTTTT-GAGGAAAAGTTGAAAGTATCATTTTTCCTT-GAAATCGAAAT
1 TTCCAAAAAAAA-TATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT--AAAT
8471296 TTCC---AAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
1 TTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
8471340 CTACAAAAAA
Statistics
Matches: 312, Mismatches: 15, Indels: 37
0.86 0.04 0.10
Matches are distributed among these distances:
57 86 0.28
58 11 0.04
59 104 0.33
60 38 0.12
61 15 0.05
62 2 0.01
64 56 0.18
ACGTcount: A:0.44, C:0.09, G:0.14, T:0.34
Consensus pattern (59 bp):
TTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAT
Found at i:8473760 original size:13 final size:13
Alignment explanation
Indices: 8473727--8473761 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
8473717 GGATTTTTAT
8473727 GAGGTTTTGAGTA
1 GAGGTTTTGAGTA
*
8473740 -AGGGTTTGAGTA
1 GAGGTTTTGAGTA
8473752 GAGGTTTTGA
1 GAGGTTTTGA
8473762 AGGTTTGGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.23, C:0.00, G:0.40, T:0.37
Consensus pattern (13 bp):
GAGGTTTTGAGTA
Found at i:8473850 original size:16 final size:16
Alignment explanation
Indices: 8473829--8473859 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8473819 TTAGGGTTTT
8473829 GATTTTAGAGTTTGGA
1 GATTTTAGAGTTTGGA
*
8473845 GATTTTAGGGTTTGG
1 GATTTTAGAGTTTGG
8473860 GTTTTGATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.45
Consensus pattern (16 bp):
GATTTTAGAGTTTGGA
Found at i:8473874 original size:20 final size:20
Alignment explanation
Indices: 8473845--8473884 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8473835 AGAGTTTGGA
* *
8473845 GATTTTAGGGTTTGGGTTTT
1 GATTTAAGGGTTTGGATTTT
8473865 GATTTAAGGGTTTGGATTTT
1 GATTTAAGGGTTTGGATTTT
8473885 AGGGATTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.33, T:0.53
Consensus pattern (20 bp):
GATTTAAGGGTTTGGATTTT
Found at i:8473895 original size:36 final size:36
Alignment explanation
Indices: 8473816--8473888 Score: 105
Period size: 36 Copynumber: 2.1 Consensus size: 36
8473806 GGATATGGAA
*
8473816 GGTTTAGGGTTTTGATTTTAGAGTTTGGAGATTTTAG
1 GGTTT-GGGTTTTGATTTAAGAGTTTGGAGATTTTAG
*
8473853 GGTTTGGGTTTTGATTTAAGGGTTT-G-GATTTTAG
1 GGTTTGGGTTTTGATTTAAGAGTTTGGAGATTTTAG
8473887 GG
1 GG
8473889 ATTTTGGATT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
34 10 0.29
35 1 0.03
36 18 0.53
37 5 0.15
ACGTcount: A:0.16, C:0.00, G:0.36, T:0.48
Consensus pattern (36 bp):
GGTTTGGGTTTTGATTTAAGAGTTTGGAGATTTTAG
Found at i:8473901 original size:36 final size:36
Alignment explanation
Indices: 8473816--8473901 Score: 95
Period size: 36 Copynumber: 2.4 Consensus size: 36
8473806 GGATATGGAA
* *
8473816 GGTTTAGGGTTTTGATTTTAGAGTTTGGAGATTTTAG
1 GGTTT-GGATTTTGATTTAAGAGTTTGGAGATTTTAG
* *
8473853 GGTTTGGGTTTTGATTTAAGGGTTT-G-GATTTTAG
1 GGTTTGGATTTTGATTTAAGAGTTTGGAGATTTTAG
8473887 GGATTTTGGATTTTG
1 GG--TTTGGATTTTG
8473902 GGTTGGATTT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
34 10 0.23
35 1 0.02
36 28 0.64
37 5 0.11
ACGTcount: A:0.16, C:0.00, G:0.34, T:0.50
Consensus pattern (36 bp):
GGTTTGGATTTTGATTTAAGAGTTTGGAGATTTTAG
Found at i:8473959 original size:17 final size:16
Alignment explanation
Indices: 8473945--8474033 Score: 108
Period size: 16 Copynumber: 5.5 Consensus size: 16
8473935 CAGATTTTGG
8473945 GGGGTTTTGGATTTTA
1 GGGGTTTTGGATTTTA
*
8473961 AGGGTTTTGGATTTTA
1 GGGGTTTTGGATTTTA
*
8473977 GGGATTTTGGATTTTTA
1 GGGGTTTTGGA-TTTTA
8473994 GTGGGTTTTGGATTTTA
1 G-GGGTTTTGGATTTTA
* * *
8474011 GAGATTTTTGATTTT-
1 GGGGTTTTGGATTTTA
8474026 GGGGTTTT
1 GGGGTTTT
8474034 AGAAACCTAG
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
15 6 0.10
16 35 0.56
17 12 0.19
18 9 0.15
ACGTcount: A:0.15, C:0.00, G:0.33, T:0.53
Consensus pattern (16 bp):
GGGGTTTTGGATTTTA
Found at i:8474005 original size:34 final size:33
Alignment explanation
Indices: 8473949--8474025 Score: 111
Period size: 34 Copynumber: 2.3 Consensus size: 33
8473939 TTTTGGGGGG
*
8473949 TTTTGGA-TTTTAAGGGTTTTGGATTTTAGGGA
1 TTTTGGATTTTTAAGGGTTTTGGATTTTAGAGA
*
8473981 TTTTGGATTTTTAGTGGGTTTTGGATTTTAGAGA
1 TTTTGGATTTTTA-AGGGTTTTGGATTTTAGAGA
*
8474015 TTTTTGATTTT
1 TTTTGGATTTT
8474026 GGGGTTTTAG
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
32 7 0.17
33 5 0.12
34 28 0.70
ACGTcount: A:0.17, C:0.00, G:0.27, T:0.56
Consensus pattern (33 bp):
TTTTGGATTTTTAAGGGTTTTGGATTTTAGAGA
Found at i:8475332 original size:23 final size:23
Alignment explanation
Indices: 8475302--8475347 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
8475292 TTCAGAGAAT
8475302 ATTCGAGAGAAAAGTTGAAGGGG
1 ATTCGAGAGAAAAGTTGAAGGGG
8475325 ATTCGAGAGAAAAGTTGAAGGGG
1 ATTCGAGAGAAAAGTTGAAGGGG
8475348 GAATGGGTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.04, G:0.39, T:0.17
Consensus pattern (23 bp):
ATTCGAGAGAAAAGTTGAAGGGG
Found at i:8475561 original size:21 final size:21
Alignment explanation
Indices: 8475537--8475576 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
8475527 ATAAATAATA
*
8475537 ATTATTATTTTTAAAATTATT
1 ATTATTATTATTAAAATTATT
8475558 ATTATTATTATTAAAATTA
1 ATTATTATTATTAAAATTA
8475577 AAATAATAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTATTATTATTAAAATTATT
Found at i:8475829 original size:21 final size:21
Alignment explanation
Indices: 8475799--8475840 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8475789 ATGAGATTTG
* *
8475799 TTACTCTAACAGTAAGTTTAA
1 TTACTATAACAGTAAGATTAA
*
8475820 TTACTATAACGGTAAGATTAA
1 TTACTATAACAGTAAGATTAA
8475841 AATTAATAGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (21 bp):
TTACTATAACAGTAAGATTAA
Found at i:8476042 original size:53 final size:52
Alignment explanation
Indices: 8475982--8476109 Score: 181
Period size: 50 Copynumber: 2.5 Consensus size: 52
8475972 ATATTTGTGA
8475982 TATTAATAAATAATTAAAAATTATTAAAATTA-TTTTATATCAAATAATAATTT
1 TATTAAT-AATAATTAAAAATTATTAAAATTACTTTTATATCAAATAATAA-TT
*
8476035 TATTAAT-A-AATTGAAAATTATTAAAATTACTTTTATATCAAATAATAATT
1 TATTAATAATAATTAAAAATTATTAAAATTACTTTTATATCAAATAATAATT
* *
8476085 TATTATTATATATTTAAAAATTATT
1 TATTAATA-ATAATTAAAAATTATT
8476110 TTTTGTGTAT
Statistics
Matches: 67, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
50 28 0.42
51 19 0.28
52 1 0.01
53 19 0.28
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.47
Consensus pattern (52 bp):
TATTAATAATAATTAAAAATTATTAAAATTACTTTTATATCAAATAATAATT
Found at i:8476622 original size:19 final size:19
Alignment explanation
Indices: 8476598--8476637 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
8476588 ATTGGTTATA
*
8476598 ATTATAAT-TAATAATTGTT
1 ATTATAATCGAATAATT-TT
8476617 ATTATAATCGAATAATTTT
1 ATTATAATCGAATAATTTT
8476636 AT
1 AT
8476638 ACATCACATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (19 bp):
ATTATAATCGAATAATTTT
Found at i:8484407 original size:21 final size:22
Alignment explanation
Indices: 8484362--8484413 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
8484352 AATAGGTGGT
8484362 GGCTGTAAGGTGGCATAGAGGTA
1 GGCTGT-AGGTGGCATAGAGGTA
8484385 GGCTGTAGGTGGGC-TAG-GGTA
1 GGCTGTAGGT-GGCATAGAGGTA
*
8484406 GGTTGTAG
1 GGCTGTAG
8484414 AGGGTGGCTG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
21 11 0.41
22 7 0.26
23 9 0.33
ACGTcount: A:0.19, C:0.08, G:0.48, T:0.25
Consensus pattern (22 bp):
GGCTGTAGGTGGCATAGAGGTA
Found at i:8484600 original size:15 final size:15
Alignment explanation
Indices: 8484580--8484609 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8484570 AATATTATTG
8484580 TTATTATTAAAATTA
1 TTATTATTAAAATTA
*
8484595 TTATTATTAATATTA
1 TTATTATTAAAATTA
8484610 AACAAGAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TTATTATTAAAATTA
Found at i:8485676 original size:25 final size:25
Alignment explanation
Indices: 8485648--8485698 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
8485638 ATGTATATTT
*
8485648 CATTTGTTATACACGTGCATAACTA
1 CATTTGTTATACACGTGCACAACTA
8485673 CATTTGTTATACACGTGCACAACTA
1 CATTTGTTATACACGTGCACAACTA
8485698 C
1 C
8485699 TGTGCATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33
Consensus pattern (25 bp):
CATTTGTTATACACGTGCACAACTA
Found at i:8485955 original size:30 final size:30
Alignment explanation
Indices: 8485921--8485979 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
8485911 TATATCGACA
*
8485921 TACCTTACAGCACAATTTTATTTTTTAATG
1 TACCTTACAGCACAATTTTATTTTGTAATG
8485951 TACCTTACAGCACAATTTTATTTTGTAAT
1 TACCTTACAGCACAATTTTATTTTGTAAT
8485980 ACACTAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.17, G:0.07, T:0.46
Consensus pattern (30 bp):
TACCTTACAGCACAATTTTATTTTGTAATG
Found at i:8486043 original size:17 final size:18
Alignment explanation
Indices: 8486023--8486076 Score: 55
Period size: 17 Copynumber: 3.2 Consensus size: 18
8486013 TAATTAAATG
8486023 TTAT-TTATATTTAAAAA
1 TTATATTATATTTAAAAA
8486040 TTATATT-T-TTATAAAAA
1 TTATATTATATT-TAAAAA
*
8486057 TTATATTA-AATT-AAAA
1 TTATATTATATTTAAAAA
8486073 TTAT
1 TTAT
8486077 TAAATTAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
16 10 0.31
17 19 0.59
18 3 0.09
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (18 bp):
TTATATTATATTTAAAAA
Found at i:8487074 original size:16 final size:16
Alignment explanation
Indices: 8487053--8487084 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
8487043 AATATGGATC
8487053 TGTCATTATTCATCAT
1 TGTCATTATTCATCAT
8487069 TGTCATTATTCATCAT
1 TGTCATTATTCATCAT
8487085 GATGAATGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.06, T:0.50
Consensus pattern (16 bp):
TGTCATTATTCATCAT
Found at i:8488542 original size:15 final size:15
Alignment explanation
Indices: 8488522--8488551 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8488512 TTTTAAAAAA
8488522 TTTTTCTTTCCTTTC
1 TTTTTCTTTCCTTTC
*
8488537 TTTTTCTTTCTTTTC
1 TTTTTCTTTCCTTTC
8488552 CTTTATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTTCTTTCCTTTC
Found at i:8510318 original size:153 final size:151
Alignment explanation
Indices: 8510129--8510435 Score: 533
Period size: 153 Copynumber: 2.0 Consensus size: 151
8510119 TTAATAATAT
* *
8510129 AATTTATATATATGGATGTGTGTGTTAATGATTTAATGTTATTGTTGCAAACCAATAAGTTGCTA
1 AATTTATATATATGGATGTGTGTGTTAATGACTTAATCTTATTGTTGCAAACCAATAAGTTGCTA
*
8510194 TTGAAACTTAATAAAAAATAAAAGTTGATATAATTCTGGACAAACACTGGAGCCAAATAATGTTA
66 TTGAAACTTAATAAAAAATAAAAGTTGATATAATTCTGGACAAACACTGGAGCCAAACAATGTTA
8510259 AGAGAAATTACACAAATATAG
131 AGAGAAATTACACAAATATAG
* *
8510280 AATTTATATATATGCGTGTGTGTGTGTTAATGACTTAATCTTTTTGTTGCAAACCAATAAGTTGC
1 AATTTATATATATG-G-ATGTGTGTGTTAATGACTTAATCTTATTGTTGCAAACCAATAAGTTGC
* *
8510345 TATTGAAACTTAATAGAAAATAAAAGTTGATATAATTCTGGACAAACACTGGAGCCAAACATTGT
64 TATTGAAACTTAATAAAAAATAAAAGTTGATATAATTCTGGACAAACACTGGAGCCAAACAATGT
8510410 TAAGAGAAATTACACAAATATAG
129 TAAGAGAAATTACACAAATATAG
8510433 AAT
1 AAT
8510436 GATTATTTTG
Statistics
Matches: 147, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
151 14 0.10
152 1 0.01
153 132 0.90
ACGTcount: A:0.41, C:0.10, G:0.16, T:0.33
Consensus pattern (151 bp):
AATTTATATATATGGATGTGTGTGTTAATGACTTAATCTTATTGTTGCAAACCAATAAGTTGCTA
TTGAAACTTAATAAAAAATAAAAGTTGATATAATTCTGGACAAACACTGGAGCCAAACAATGTTA
AGAGAAATTACACAAATATAG
Found at i:8510883 original size:17 final size:18
Alignment explanation
Indices: 8510850--8510883 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
8510840 TAAAGTATTG
*
8510850 TAAAAGTAATTTGAAAAA
1 TAAAAGTAATTTAAAAAA
8510868 TAAAAGT-ATTTAAAAA
1 TAAAAGTAATTTAAAAA
8510884 TGACAAGTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.29
Consensus pattern (18 bp):
TAAAAGTAATTTAAAAAA
Found at i:8510892 original size:17 final size:17
Alignment explanation
Indices: 8510850--8510884 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
8510840 TAAAGTATTG
8510850 TAAAAGTAATTTGAAAAA
1 TAAAAGT-ATTTGAAAAA
8510868 TAAAAGTATTT-AAAAA
1 TAAAAGTATTTGAAAAA
8510884 T
1 T
8510885 GACAAGTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 4 0.24
18 7 0.41
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.31
Consensus pattern (17 bp):
TAAAAGTATTTGAAAAA
Found at i:8516038 original size:7 final size:7
Alignment explanation
Indices: 8515994--8516091 Score: 54
Period size: 7 Copynumber: 12.9 Consensus size: 7
8515984 GTAAGCCCAC
8515994 TTTATTT
1 TTTATTT
*
8516001 TGTATTT
1 TTTATTT
8516008 TTGTATTT
1 TT-TATTT
8516016 CTTATATTT
1 -TT-TATTT
8516025 TTATATTT
1 TT-TATTT
8516033 TTTATTT
1 TTTATTT
*
8516040 TATT-TTAC
1 T-TTATT-T
8516048 TTTATTT
1 TTTATTT
**
8516055 CATATTT
1 TTTATTT
8516062 TATGTATTT
1 T-T-TATTT
*
8516071 ATTATTT
1 TTTATTT
8516078 ATTTATTT
1 -TTTATTT
*
8516086 ATTATT
1 TTTATT
8516092 CCTATTTATT
Statistics
Matches: 71, Mismatches: 12, Indels: 16
0.72 0.12 0.16
Matches are distributed among these distances:
7 32 0.45
8 27 0.38
9 12 0.17
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.72
Consensus pattern (7 bp):
TTTATTT
Found at i:8516040 original size:15 final size:15
Alignment explanation
Indices: 8515996--8516040 Score: 54
Period size: 17 Copynumber: 2.9 Consensus size: 15
8515986 AAGCCCACTT
* *
8515996 TATTTTGTATTTTTG
1 TATTTTTTATTTTTA
8516011 TATTTCTTATATTTTTA
1 TATTT-TT-TATTTTTA
8516028 TATTTTTTATTTT
1 TATTTTTTATTTT
8516041 ATTTTACTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 11 0.42
16 3 0.12
17 12 0.46
ACGTcount: A:0.18, C:0.02, G:0.04, T:0.76
Consensus pattern (15 bp):
TATTTTTTATTTTTA
Found at i:8516079 original size:4 final size:4
Alignment explanation
Indices: 8515994--8516267 Score: 79
Period size: 4 Copynumber: 66.8 Consensus size: 4
8515984 GTAAGCCCAC
* *
8515994 TTTA TTT- TGTA TTT- TTGTA TTTC TTATA TTT- TTATA TTT- TTTA TTTTA
1 TTTA TTTA TTTA TTTA TT-TA TTTA TT-TA TTTA TT-TA TTTA TTTA -TTTA
* *
8516042 TTTTA CTTTA TTTCA TAT- TTTA TGTA TTTA -TTA TTTA TTTA TTTA -TTA
1 -TTTA -TTTA TTT-A TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* * *
8516090 TTCCTA TTTA TTAATA TATA TTTA TTTTA TTTTA TTTT TATTA TTTT TATTA
1 TT--TA TTTA TT--TA TTTA TTTA -TTTA -TTTA TTTA T-TTA TTTA T-TTA
* * * * * * * *
8516142 TTTA TCTG TTGA TATA TATA TGTA -TTA -TTA TTTA TCTA TTTA TATA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* * * * *
8516188 TATTA -TTA TTTA TCTA TTAA TTAA TATA -TTA TCCTTA -TTA -TTA TCTTT
1 T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T--TTA TTTA TTTA T-TTA
* *
8516236 TTTA TTTT TTTA TTTT TTTA TTTA TTTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA -TTTA TTT
8516268 TTTTCTTTTC
Statistics
Matches: 202, Mismatches: 40, Indels: 56
0.68 0.13 0.19
Matches are distributed among these distances:
3 33 0.16
4 112 0.55
5 47 0.23
6 10 0.05
ACGTcount: A:0.25, C:0.04, G:0.02, T:0.69
Consensus pattern (4 bp):
TTTA
Found at i:8516133 original size:9 final size:9
Alignment explanation
Indices: 8516111--8516144 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
8516101 TAATATATAT
*
8516111 TTATTTTATT
1 TTATTTT-TA
8516121 TTATTTTTA
1 TTATTTTTA
8516130 TTATTTTTA
1 TTATTTTTA
8516139 TTATTT
1 TTATTT
8516145 ATCTGTTGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 16 0.70
10 7 0.30
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (9 bp):
TTATTTTTA
Found at i:8516172 original size:30 final size:27
Alignment explanation
Indices: 8516056--8516219 Score: 109
Period size: 26 Copynumber: 6.3 Consensus size: 27
8516046 ACTTTATTTC
*
8516056 ATATT-TTATGTATTTAT-TATTTATTT
1 ATATTATTAT-TATTTATCTATTTATAT
* * * *
8516082 AT-TTATTATTC-CTATTTATTAATAT
1 ATATTATTATTATTTATCTATTTATAT
8516107 ATATTTATT-TTATTTTAT-T-TTTAT-T
1 ATA-TTATTATTA-TTTATCTATTTATAT
*
8516132 AT-TT-TTATTATTTATCTGTTGATATAT
1 ATATTATTATTATTTATCTATT--TATAT
8516159 ATATGTATTATTATTTATCTATTTATAT
1 ATAT-TATTATTATTTATCTATTTATAT
* *
8516187 ATATTATTATTTATCTAT-TAATTA-AT
1 ATATTATTA-TTATTTATCTATTTATAT
8516213 ATATTAT
1 ATATTAT
8516220 CCTTATTATT
Statistics
Matches: 112, Mismatches: 10, Indels: 32
0.73 0.06 0.21
Matches are distributed among these distances:
22 7 0.06
23 6 0.05
24 5 0.04
25 15 0.13
26 24 0.21
27 19 0.17
28 20 0.18
29 1 0.01
30 15 0.13
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.64
Consensus pattern (27 bp):
ATATTATTATTATTTATCTATTTATAT
Found at i:8516185 original size:24 final size:24
Alignment explanation
Indices: 8516158--8516219 Score: 88
Period size: 24 Copynumber: 2.5 Consensus size: 24
8516148 TGTTGATATA
*
8516158 TATATGTATTATTATTTATCTATT
1 TATATATATTATTATTTATCTATT
8516182 TATATATATTATTATTTATCTATT
1 TATATATATTATTATTTATCTATT
*
8516206 AATTAATATATTAT
1 TA-T-ATATATTAT
8516220 CCTTATTATT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
24 24 0.71
25 1 0.03
26 9 0.26
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.60
Consensus pattern (24 bp):
TATATATATTATTATTTATCTATT
Found at i:8516268 original size:16 final size:16
Alignment explanation
Indices: 8516228--8516276 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 16
8516218 ATCCTTATTA
8516228 TTATCTTTTTTATTTTT
1 TTAT-TTTTTTATTTTT
8516245 TTATTTTTTTATTTATT
1 TTATTTTTTTATTT-TT
*
8516262 TTATTTTTTTCTTTT
1 TTATTTTTTTATTTT
8516277 CTTCTTTCCT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 11 0.37
17 19 0.63
ACGTcount: A:0.12, C:0.04, G:0.00, T:0.84
Consensus pattern (16 bp):
TTATTTTTTTATTTTT
Found at i:8516271 original size:8 final size:8
Alignment explanation
Indices: 8516228--8516276 Score: 71
Period size: 8 Copynumber: 5.9 Consensus size: 8
8516218 ATCCTTATTA
8516228 TTATCTTTT
1 TTAT-TTTT
8516237 TTATTTTT
1 TTATTTTT
8516245 TTATTTTT
1 TTATTTTT
8516253 TTATTTATT
1 TTATTT-TT
8516262 TTATTTTT
1 TTATTTTT
*
8516270 TTCTTTT
1 TTATTTT
8516277 CTTCTTTCCT
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
8 26 0.68
9 12 0.32
ACGTcount: A:0.12, C:0.04, G:0.00, T:0.84
Consensus pattern (8 bp):
TTATTTTT
Found at i:8516289 original size:25 final size:25
Alignment explanation
Indices: 8516236--8516289 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
8516226 TATTATCTTT
* *
8516236 TTTATTTTTTTATTTTTTTATTTAT
1 TTTATTTTTTTATTTTCTTATTTAC
* * *
8516261 TTTATTTTTTTCTTTTCTTCTTTCC
1 TTTATTTTTTTATTTTCTTATTTAC
8516286 TTTA
1 TTTA
8516290 CTCGATTGGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.11, C:0.09, G:0.00, T:0.80
Consensus pattern (25 bp):
TTTATTTTTTTATTTTCTTATTTAC
Found at i:8516849 original size:15 final size:15
Alignment explanation
Indices: 8516824--8516866 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
8516814 TTCAGATTTT
8516824 AAAGAGAAGGGAGAGA
1 AAAGAGAAGGGA-AGA
8516840 AAAG-GAAGGGAAG-
1 AAAGAGAAGGGAAGA
8516853 AAAGAGAGAGGGAA
1 AAAGAGA-AGGGAA
8516867 TGAGGGTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 4 0.16
14 4 0.16
15 13 0.52
16 4 0.16
ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00
Consensus pattern (15 bp):
AAAGAGAAGGGAAGA
Found at i:8517154 original size:15 final size:14
Alignment explanation
Indices: 8517130--8517161 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
8517120 TTTTTTTTTC
8517130 ATTTTTTATTATTT
1 ATTTTTTATTATTT
8517144 ATTTATTTATTATTT
1 ATTT-TTTATTATTT
8517159 ATT
1 ATT
8517162 AATTAGATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (14 bp):
ATTTTTTATTATTT
Found at i:8517193 original size:13 final size:13
Alignment explanation
Indices: 8517175--8517218 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
8517165 TAGATTAGAA
8517175 TTATTTAATTTTT
1 TTATTTAATTTTT
8517188 TTATTTAATTTTT
1 TTATTTAATTTTT
8517201 TTATTT--TTATTT
1 TTATTTAATT-TTT
8517213 TTATTT
1 TTATTT
8517219 TCATTTTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
11 2 0.07
12 9 0.30
13 19 0.63
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
TTATTTAATTTTT
Found at i:8517207 original size:5 final size:5
Alignment explanation
Indices: 8517186--8517238 Score: 56
Period size: 5 Copynumber: 10.4 Consensus size: 5
8517176 TATTTAATTT
*
8517186 TTTTA -TTTA ATTT- TTTTA TTTTTA TTTTTA TTTTCA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA -TTTTA -TTTTA TTTT-A TTTTA TTTTA
8517232 TTTTA TT
1 TTTTA TT
8517239 ATTTTTACTT
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
4 7 0.16
5 20 0.47
6 16 0.37
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:8517209 original size:6 final size:6
Alignment explanation
Indices: 8517185--8517245 Score: 56
Period size: 6 Copynumber: 10.0 Consensus size: 6
8517175 TTATTTAATT
*
8517185 TTTTTA TTTAATT- TTTTTA TTTTTA TTTTTA TTTTCA -TTTTA -TTTTA
1 TTTTTA TTT--TTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
8517232 TTTTATTA TTTTTA
1 -TTT-TTA TTTTTA
8517246 CTTTCTTAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
5 11 0.23
6 23 0.49
7 8 0.17
8 5 0.11
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:8517242 original size:13 final size:13
Alignment explanation
Indices: 8517175--8517243 Score: 52
Period size: 13 Copynumber: 5.2 Consensus size: 13
8517165 TAGATTAGAA
* *
8517175 TTATTTAATTTTT
1 TTATTTTATTATT
* *
8517188 TTATTTAATTTTT
1 TTATTTTATTATT
8517201 TTA-TTT-TTATTT
1 TTATTTTATTA-TT
8517213 TTATTTTCATTTTATT
1 TTATTTT-A--TTATT
8517229 TTATTTTATTATT
1 TTATTTTATTATT
8517242 TT
1 TT
8517244 TACTTTCTTA
Statistics
Matches: 48, Mismatches: 2, Indels: 12
0.77 0.03 0.19
Matches are distributed among these distances:
11 2 0.04
12 7 0.15
13 26 0.54
15 1 0.02
16 9 0.19
17 3 0.06
ACGTcount: A:0.20, C:0.01, G:0.00, T:0.78
Consensus pattern (13 bp):
TTATTTTATTATT
Found at i:8517316 original size:59 final size:59
Alignment explanation
Indices: 8517253--8517366 Score: 144
Period size: 59 Copynumber: 1.9 Consensus size: 59
8517243 TTACTTTCTT
8517253 AAATAAAAT-TCCAAAAA-AAATATTTTTG-GAGAAAAGTTGAAAGTATCAATTTTCCTTAA
1 AAAT-AAATCTCCAAAAATAAAT-TTTTTGAGA-AAAAGTTGAAAGTATCAATTTTCCTTAA
* * * *
8517312 AAATAAGTCTTCAAAAATGAATTTTTTGAGAAAAAGTTGAAAGTGTCAATTTTCC
1 AAATAAATCTCCAAAAATAAATTTTTTGAGAAAAAGTTGAAAGTATCAATTTTCC
8517367 CTGCACAAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
58 3 0.06
59 40 0.83
60 5 0.10
ACGTcount: A:0.46, C:0.09, G:0.12, T:0.33
Consensus pattern (59 bp):
AAATAAATCTCCAAAAATAAATTTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAA
Found at i:8522698 original size:111 final size:111
Alignment explanation
Indices: 8522504--8522729 Score: 373
Period size: 111 Copynumber: 2.0 Consensus size: 111
8522494 CTGTGAGCAA
* * *
8522504 TTTCACCGAGAGGTGTAAAAACTCTTGGATTCATACCAGATGGAGGTCTATAAAAGAAAAAAAGA
1 TTTCACCAAGAGGTGCAAAAACTCTTGGATTCATACCAGATAGAGGTCTATAAAAGAAAAAAAGA
*
8522569 CTTAAGAAGTGCTGAGGTGTCCATGACTGATAAGCCTGCAAAGCTG
66 CTTAAGAAGTGCTGAGGTGTCCATGACTGATAAACCTGCAAAGCTG
*
8522615 TTTCACCAAGAGGTGCAAAAACTCTTGGATTCATACCAGATAGAGGTCTATAAAAGAAGAGAAA-
1 TTTCACCAAGAGGTGCAAAAACTCTTGGATTCATACCAGATAGAGGTCTATAAAAGAA-AAAAAG
* *
8522679 ACTTAAGAAGTGTTGAGGTGTCCATGACTGATAAACCTGCAAAGTTG
65 ACTTAAGAAGTGCTGAGGTGTCCATGACTGATAAACCTGCAAAGCTG
8522726 TTTC
1 TTTC
8522730 CAAAGTCAGT
Statistics
Matches: 107, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
111 103 0.96
112 4 0.04
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (111 bp):
TTTCACCAAGAGGTGCAAAAACTCTTGGATTCATACCAGATAGAGGTCTATAAAAGAAAAAAAGA
CTTAAGAAGTGCTGAGGTGTCCATGACTGATAAACCTGCAAAGCTG
Found at i:8527903 original size:18 final size:18
Alignment explanation
Indices: 8527880--8527925 Score: 76
Period size: 17 Copynumber: 2.6 Consensus size: 18
8527870 TATTATGCTT
8527880 AAAAAAATGAAAAAATAA
1 AAAAAAATGAAAAAATAA
*
8527898 AAAAAAATG-AAAAATGA
1 AAAAAAATGAAAAAATAA
8527915 AAAAAAATGAA
1 AAAAAAATGAA
8527926 TGAAAAAGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 16 0.62
18 10 0.38
ACGTcount: A:0.80, C:0.00, G:0.09, T:0.11
Consensus pattern (18 bp):
AAAAAAATGAAAAAATAA
Found at i:8528977 original size:41 final size:41
Alignment explanation
Indices: 8528927--8529139 Score: 245
Period size: 41 Copynumber: 5.1 Consensus size: 41
8528917 GATTGTCAAT
* *
8528927 GAGCAATTTATTTTTCAAAGTCATTGAGCCTCTGATTAGAG
1 GAGCCATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAG
8528968 GAGCCATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAG
1 GAGCCATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAG
* * * * *
8529009 GAGCCGTTTATTTTCCAAATTCATTGAGCCTCTGTTTAGAG
1 GAGCCATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAG
*
8529050 GAG-C-TTTATTCATTTTCAAAGTCGTTGAGCCTCTGATTAGAA
1 GAGCCATTTA-T--TTTTCAAAGTCGTTGAGCCTCTGATTAGAG
8529092 GAG-CATTGTTTATGTTTTTCAAAGTCGTTGAGCCTCT-ACTTAGAG
1 GAGCCA---TTTA--TTTTTCAAAGTCGTTGAGCCTCTGA-TTAGAG
8529137 GAG
1 GAG
8529140 TTTTGATCAC
Statistics
Matches: 149, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
39 4 0.03
40 2 0.01
41 78 0.52
42 29 0.19
44 1 0.01
45 30 0.20
46 4 0.03
47 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (41 bp):
GAGCCATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAG
Found at i:8529413 original size:46 final size:46
Alignment explanation
Indices: 8529342--8529430 Score: 103
Period size: 46 Copynumber: 1.9 Consensus size: 46
8529332 TATTTTGTAT
*
8529342 TTTTGTATTTCTTATATTTTATATTTTTATATTTTATT-TTACTTTA
1 TTTTGTATTTCTTATATTTTATATTTATATA-TTTATTATTACTTTA
* *
8529388 TTTTGTA-TT-TTATGTATTTATTATTTATGTATTTATTATTACT
1 TTTTGTATTTCTTATAT-TTTA-TATTTATATATTTATTATTACT
8529431 ATTTATTAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
44 5 0.14
45 12 0.32
46 20 0.54
ACGTcount: A:0.22, C:0.03, G:0.04, T:0.70
Consensus pattern (46 bp):
TTTTGTATTTCTTATATTTTATATTTATATATTTATTATTACTTTA
Found at i:8529415 original size:4 final size:4
Alignment explanation
Indices: 8529374--8529568 Score: 65
Period size: 4 Copynumber: 48.8 Consensus size: 4
8529364 ATTTTTATAT
* * *
8529374 TTTA TTTTA CTTTA TTT- TGTA TTTTA TGTA TTTA -TTA TTTA TGTA TTTA
1 TTTA -TTTA -TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TTTA
*
8529423 -TTA TTACTA TTTA TTAATA TATA TTTA TTTTA TTT- TTT- TTTA -TTA
1 TTTA TT--TA TTTA TT--TA TTTA TTTA -TTTA TTTA TTTA TTTA TTTA
* * * *
8529468 -TTA TTTA TTTG TTGATA TATA TGTA -TTA -TTA TTTA TCTA -TTA -TTA
1 TTTA TTTA TTTA TT--TA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* * * * *
8529513 -TTA -TTA TTTA TCTA TTAA TTAA TATA TTATC TTTA TTTA TTTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT-TA TTTA TTTA -TTTA TTTA
8529561 TTTTA TTT
1 -TTTA TTT
8529569 TTTTTCTTTT
Statistics
Matches: 148, Mismatches: 24, Indels: 37
0.71 0.11 0.18
Matches are distributed among these distances:
3 36 0.24
4 77 0.52
5 26 0.18
6 9 0.06
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.67
Consensus pattern (4 bp):
TTTA
Found at i:8529426 original size:3 final size:3
Alignment explanation
Indices: 8529405--8529567 Score: 54
Period size: 3 Copynumber: 50.7 Consensus size: 3
8529395 TTTTATGTAT
* *
8529405 TTA TTA TTTA TGTA TTTA TTA TTA CTA TTTA TTA ATA TATA TTTA TT-
1 TTA TTA -TTA T-TA -TTA TTA TTA TTA -TTA TTA TTA T-TA -TTA TTA
* *
8529452 TTA TT- TT- TTT TTA TTA TTA TTTA TTTG TTGA -TA TATA TGTA TTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA -TTA TT-A TTA T-TA T-TA TTA
*
8529496 TTA TTTA TCTA TTA TTA TTA TTA TTTA TCTA TTAA TTA ATA -TA TTA
1 TTA -TTA T-TA TTA TTA TTA TTA -TTA T-TA TT-A TTA TTA TTA TTA
8529542 TCT- TTA TTTA TT- TTA TTTA TT- TTA TT
1 T-TA TTA -TTA TTA TTA -TTA TTA TTA TT
8529568 TTTTTTCTTT
Statistics
Matches: 127, Mismatches: 9, Indels: 48
0.69 0.05 0.26
Matches are distributed among these distances:
2 14 0.11
3 64 0.50
4 47 0.37
5 2 0.02
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:8529434 original size:54 final size:54
Alignment explanation
Indices: 8529327--8529434 Score: 139
Period size: 54 Copynumber: 2.0 Consensus size: 54
8529317 TGGGTAGGCC
* * **
8529327 TACTTTATTTTGTATTTTTGTATTTCTTATATTTTATATTTTTATATTTTATTT
1 TACTTTATTTTGTATTTTTGTATTTATTATATTATATATTTTTATATACTATTT
*
8529381 TACTTTATTTTGTATTTTATGTATTTATTAT-TTATGTATTTATTAT-TACTATTT
1 TACTTTATTTTGTATTTT-TGTATTTATTATATTATATATTT-TTATATACTATTT
8529435 ATTAATATAT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
54 32 0.68
55 15 0.32
ACGTcount: A:0.22, C:0.04, G:0.05, T:0.69
Consensus pattern (54 bp):
TACTTTATTTTGTATTTTTGTATTTATTATATTATATATTTTTATATACTATTT
Found at i:8529449 original size:14 final size:14
Alignment explanation
Indices: 8529402--8529539 Score: 54
Period size: 14 Copynumber: 10.1 Consensus size: 14
8529392 GTATTTTATG
* *
8529402 TATTTATTATTTATG
1 TATTTATTA-ATATA
8529417 TATTTATT-AT-TA
1 TATTTATTAATATA
8529429 CTATTTATTAATATA
1 -TATTTATTAATATA
* * *
8529444 TATTTATTTTATTTT
1 TATTTA-TTAATATA
* * *
8529459 TTTTTATTATTATT
1 TATTTATTAATATA
* *
8529473 TATTTGTTGATATA
1 TATTTATTAATATA
* * *
8529487 TATGTATTATTATT
1 TATTTATTAATATA
* *
8529501 TATCTATTATTAT-
1 TATTTATTAATATA
*
8529514 TA-TTATT--TATC
1 TATTTATTAATATA
*
8529525 TATTAATTAATATA
1 TATTTATTAATATA
8529539 T
1 T
8529540 TATCTTTATT
Statistics
Matches: 92, Mismatches: 23, Indels: 17
0.70 0.17 0.13
Matches are distributed among these distances:
10 3 0.03
11 2 0.02
12 9 0.10
13 11 0.12
14 47 0.51
15 20 0.22
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.64
Consensus pattern (14 bp):
TATTTATTAATATA
Found at i:8529465 original size:77 final size:73
Alignment explanation
Indices: 8529362--8529523 Score: 166
Period size: 77 Copynumber: 2.2 Consensus size: 73
8529352 CTTATATTTT
* * * *
8529362 ATATTTTTATATTTTATTTTACTTTATTTTGTATTTTATGTATTTATTATTTATGTATTTATTA-
1 ATATTATT-TATTTTATTTTACTTTATTAT-TA-TTTATGTATTGA-TATATATGTA-TTATTAT
8529426 TTA-CTATTTATTA
61 TTATCTA-TTATTA
** * *
8529439 ATATATATTTATTTTATTTTTTTTTATTATTATTTATTTGTTGATATATATGTATTATTATTTAT
1 ATAT-TATTTATTTTATTTTACTTTATTATTATTTATGTATTGATATATATGTATTATTATTTAT
8529504 CTATTATTA
65 CTATTATTA
*
8529513 TTATTATTTAT
1 ATATTATTTAT
8529524 CTATTAATTA
Statistics
Matches: 73, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
73 13 0.18
74 21 0.29
75 12 0.16
76 2 0.03
77 22 0.30
78 3 0.04
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (73 bp):
ATATTATTTATTTTATTTTACTTTATTATTATTTATGTATTGATATATATGTATTATTATTTATC
TATTATTA
Found at i:8529476 original size:87 final size:86
Alignment explanation
Indices: 8529373--8529564 Score: 216
Period size: 87 Copynumber: 2.2 Consensus size: 86
8529363 TATTTTTATA
* *
8529373 TTTTATTTTACTTTATTTTG-T-AT-TTTATGTATTTATTATTTATGTATTTATTATTACTATTT
1 TTTTATTTTA-TTTATTTTGTTGATATATATGTA-TTATTATTTATCTA-TTATTATTACTATTT
* *
8529435 AT-TAATATATATT-TATTTTATTTTT
63 ATCT-AT-TA-ATTATATATTATCTTT
*
8529460 TTTTATTATTATTTA-TTTGTTGATATATATGTATTATTATTTATCTATTATTATTATTATTTAT
1 TTTTATT-TTATTTATTTTGTTGATATATATGTATTATTATTTATCTATTATTATTACTATTTAT
8529524 CTATTAATTAATATATTATCTTT
65 CTATTAATT-ATATATTATCTTT
*
8529547 ATTTATTTTATTTATTTT
1 TTTTATTTTATTTATTTT
8529565 ATTTTTTTTC
Statistics
Matches: 91, Mismatches: 6, Indels: 16
0.81 0.05 0.14
Matches are distributed among these distances:
85 3 0.03
86 13 0.14
87 49 0.54
88 19 0.21
89 7 0.08
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.67
Consensus pattern (86 bp):
TTTTATTTTATTTATTTTGTTGATATATATGTATTATTATTTATCTATTATTATTACTATTTATC
TATTAATTATATATTATCTTT
Found at i:8529570 original size:15 final size:15
Alignment explanation
Indices: 8529330--8529473 Score: 61
Period size: 15 Copynumber: 9.5 Consensus size: 15
8529320 GTAGGCCTAC
8529330 TTTATTTTGTATTT-T
1 TTTATTTT-TATTTAT
*
8529345 TGTATTTCTTA--TAT
1 TTTATTT-TTATTTAT
*
8529359 TTTATATTTT-TATAT
1 TTTAT-TTTTATTTAT
8529374 TTTA-TTTTACTTTAT
1 TTTATTTTTA-TTTAT
* *
8529389 TTTGTATTTTATGTA-
1 TTTAT-TTTTATTTAT
*
8529404 TTTATTATTTATGTA-
1 TTTATT-TTTATTTAT
8529419 TTTATTATTACTATTTA-
1 TTTATT-TT--TATTTAT
* * *
8529436 TTAATATATATTTAT
1 TTTATTTTTATTTAT
*
8529451 TTTATTTTTTTTTAT
1 TTTATTTTTATTTAT
8529466 TATTATTT
1 T-TTATTT
8529474 ATTTGTTGAT
Statistics
Matches: 101, Mismatches: 14, Indels: 27
0.71 0.10 0.19
Matches are distributed among these distances:
13 5 0.05
14 14 0.14
15 57 0.56
16 11 0.11
17 14 0.14
ACGTcount: A:0.24, C:0.02, G:0.03, T:0.71
Consensus pattern (15 bp):
TTTATTTTTATTTAT
Found at i:8529573 original size:9 final size:9
Alignment explanation
Indices: 8529356--8529572 Score: 73
Period size: 10 Copynumber: 23.7 Consensus size: 9
8529346 GTATTTCTTA
8529356 TATTTTATAT
1 TATTTTAT-T
8529366 T-TTTATATTT
1 TATTT-TA-TT
8529376 TATTTTACTT
1 TATTTTA-TT
*
8529386 TA-TTT-TG
1 TATTTTATT
*
8529393 TATTTTATG
1 TATTTTATT
8529402 TATTTATTATT
1 TA-TT-TTATT
*
8529413 TA-TGTATT
1 TATTTTATT
*
8529421 TATTATTA-C
1 TATT-TTATT
8529430 TA-TTTATT
1 TATTTTATT
* *
8529438 AATATATATT
1 TAT-TTTATT
8529448 TATTTTA-T
1 TATTTTATT
8529456 T-TTTT-TT
1 TATTTTATT
8529463 TATTATTATT
1 TATT-TTATT
*
8529473 TA-TTTGTT
1 TATTTTATT
* * *
8529481 GATATATATG
1 TAT-TTTATT
8529491 TATTATTATT
1 TATT-TTATT
8529501 TATCTATTA-T
1 TAT-T-TTATT
8529511 TATTATTATT
1 TATT-TTATT
*
8529521 TA-TCTATT
1 TATTTTATT
* *
8529529 AATTAATATAT
1 TATT-TTAT-T
8529540 TATCTTTATT
1 TAT-TTTATT
8529550 TATTTTATT
1 TATTTTATT
8529559 TATTTTATT
1 TATTTTATT
8529568 T-TTTT
1 TATTTT
8529573 TCTTTTCTTC
Statistics
Matches: 158, Mismatches: 24, Indels: 52
0.68 0.10 0.22
Matches are distributed among these distances:
7 12 0.08
8 29 0.18
9 44 0.28
10 51 0.32
11 21 0.13
12 1 0.01
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.68
Consensus pattern (9 bp):
TATTTTATT
Found at i:8529578 original size:14 final size:14
Alignment explanation
Indices: 8529356--8529569 Score: 54
Period size: 15 Copynumber: 14.8 Consensus size: 14
8529346 GTATTTCTTA
8529356 TATTTTATATTT-TT
1 TATTTTAT-TTTATT
8529370 ATATTTTATTTTACTT
1 -TATTTTATTTTA-TT
*
8529386 TATTTTGTATTTTATG
1 TA-TTT-TATTTTATT
*
8529402 TA-TTTATTATTTATG
1 TATTTTA-T-TTTATT
*
8529417 TA-TTTATTATTA-C
1 TATTTTATT-TTATT
* *
8529430 TA-TTTA-TTAATA
1 TATTTTATTTTATT
8529442 TATATTTATTTTATTT
1 TAT-TTTATTTTA-TT
*
8529458 TTTTTTATTATTATT
1 TATTTTATT-TTATT
* * *
8529473 TA-TTT-GTTGATA
1 TATTTTATTTTATT
*
8529485 TATATGTATTATTATT
1 TAT-TTTATT-TTATT
8529501 TATCTATTATTATTA-T
1 TAT-T-TTATT-TTATT
*
8529517 TA-TTTATCTATTAAT
1 TATTTTAT-T-TTATT
* * * *
8529532 TAATATATTATCTT
1 TATTTTATTTTATT
8529546 TA-TTTATTTTATT
1 TATTTTATTTTATT
8529559 TATTTTATTTT
1 TATTTTATTTT
8529570 TTTTCTTTTC
Statistics
Matches: 153, Mismatches: 24, Indels: 45
0.69 0.11 0.20
Matches are distributed among these distances:
11 2 0.01
12 8 0.05
13 24 0.16
14 37 0.24
15 39 0.25
16 28 0.18
17 15 0.10
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.68
Consensus pattern (14 bp):
TATTTTATTTTATT
Found at i:8530476 original size:9 final size:10
Alignment explanation
Indices: 8530462--8530537 Score: 50
Period size: 9 Copynumber: 7.7 Consensus size: 10
8530452 TCATTTTTTA
8530462 ATTTATTATT
1 ATTTATTATT
8530472 A-TTATTATT
1 ATTTATTATT
8530481 ATTTATTAATT
1 ATTTATT-ATT
* **
8530492 AGATTAGAATT
1 A-TTTATTATT
* *
8530503 GTTTAATATT
1 ATTTATTATT
*
8530513 TTTTATT-TT
1 ATTTATTATT
*
8530522 ATTTTTTATT
1 ATTTATTATT
8530532 -TTTATT
1 ATTTATT
8530538 TTCATTTTAT
Statistics
Matches: 50, Mismatches: 12, Indels: 9
0.70 0.17 0.13
Matches are distributed among these distances:
9 21 0.42
10 19 0.38
11 7 0.14
12 3 0.06
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (10 bp):
ATTTATTATT
Found at i:8530523 original size:5 final size:5
Alignment explanation
Indices: 8530513--8530553 Score: 50
Period size: 5 Copynumber: 8.4 Consensus size: 5
8530503 GTTTAATATT
*
8530513 TTTTA TTTTA TTTT- TTAT- TTTTA TTTTCA TTTTA TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT-A TTTTA TTTTA TT
8530554 ATTTTTACTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
4 6 0.19
5 21 0.66
6 5 0.16
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:8530526 original size:12 final size:12
Alignment explanation
Indices: 8530509--8530558 Score: 66
Period size: 12 Copynumber: 4.1 Consensus size: 12
8530499 AATTGTTTAA
8530509 TATTTTTTATTT
1 TATTTTTTATTT
8530521 TATTTTTTATTT
1 TATTTTTTATTT
*
8530533 T-TATTTTCATTT
1 TAT-TTTTTATTT
8530545 TATTTTATTATTT
1 TATTTT-TTATTT
8530558 T
1 T
8530559 TACTTTCTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
11 1 0.03
12 25 0.76
13 7 0.21
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (12 bp):
TATTTTTTATTT
Found at i:8530533 original size:19 final size:18
Alignment explanation
Indices: 8530509--8530558 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 18
8530499 AATTGTTTAA
8530509 TATTTTTTATTTT-ATTT
1 TATTTTTTATTTTCATTT
*
8530526 TTTATTTTTATTTTCATTT
1 TAT-TTTTTATTTTCATTT
8530545 TATTTTATTATTTT
1 TATTTT-TTATTTT
8530559 TACTTTCTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 2 0.07
18 13 0.46
19 13 0.46
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (18 bp):
TATTTTTTATTTTCATTT
Found at i:8530537 original size:25 final size:26
Alignment explanation
Indices: 8530509--8530569 Score: 81
Period size: 24 Copynumber: 2.3 Consensus size: 26
8530499 AATTGTTTAA
8530509 TATTTTTTATTTTATTTT-TTATTTT
1 TATTTTTTATTTTATTTTATTATTTT
*
8530534 TA-TTTTCATTTTATTTTATTATTTT
1 TATTTTTTATTTTATTTTATTATTTT
8530559 TACTTTCTTTA
1 TA-TTT-TTTA
8530570 AATAAAATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
24 14 0.47
25 11 0.37
27 2 0.07
28 3 0.10
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.77
Consensus pattern (26 bp):
TATTTTTTATTTTATTTTATTATTTT
Found at i:8530685 original size:60 final size:61
Alignment explanation
Indices: 8530569--8530864 Score: 347
Period size: 61 Copynumber: 4.9 Consensus size: 61
8530559 TACTTTCTTT
* * * * * * *
8530569 AAATAAA-ATTCAAAAAAAAATATTTTTGGA-AAAAAATTGAAAGTATTAATTTTTCTTAA
1 AAATAAATTTTCAAAAAAAGATTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAA
* * *
8530628 AAATAAATTTTTAAAAAAAGATTTTTTTTGAAGAAAAGTTGAAAGTATCAA-TTTTCTTCGA
1 AAATAAATTTTCAAAAAAAGATTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTT-AA
* * *
8530689 AATTAAAGTTTTC-AAAAAA-A-TATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAA
1 AAATAAA-TTTTCAAAAAAAGATTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAA
* **
8530748 AAATAAATTTTCAAAAAAAGATTTTTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTCGA
1 AAATAAATTTTCAAAAAAAGATTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAA
* *
8530809 AATTAAAGTTTTCAAAAATAGA-TTTTTTT-AGGAAAAGTTGAAAGTATCAATTTTTC
1 AAATAAA-TTTTCAAAAAAAGATTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTC
8530865 CTATACAAAA
Statistics
Matches: 206, Mismatches: 22, Indels: 17
0.84 0.09 0.07
Matches are distributed among these distances:
58 5 0.02
59 46 0.22
60 60 0.29
61 78 0.38
62 17 0.08
ACGTcount: A:0.45, C:0.05, G:0.12, T:0.39
Consensus pattern (61 bp):
AAATAAATTTTCAAAAAAAGATTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAA
Found at i:8530729 original size:120 final size:120
Alignment explanation
Indices: 8530582--8530864 Score: 444
Period size: 120 Copynumber: 2.4 Consensus size: 120
8530572 TAAAATTCAA
** * * *
8530582 AAAAAAATATTTTTGGAAAAAAATTGAAAGTATTAATTTTTCTTAAAAATAAATTTTTAAAAAAA
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAAA
8530647 GATTTTTTTTGAAGAAAAGTTGAAAGTATCAA-TTTTCTTCGAAATTAAAGTTTTC
66 GATTTTTTTTGAAGAAAAGTTGAAAGTATCAATTTTTC-TCGAAATTAAAGTTTTC
8530702 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAAA
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAAA
**
8530767 GATTTTTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTTC
66 GATTTTTTTTGAAGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTTC
**
8530822 AAAAATAGAT-TTTTTTAGGAAAAGTTGAAAGTATCAATTTTTC
1 AAAAA-A-ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTC
8530865 CTATACAAAA
Statistics
Matches: 151, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
120 112 0.74
121 37 0.25
122 2 0.01
ACGTcount: A:0.43, C:0.05, G:0.12, T:0.39
Consensus pattern (120 bp):
AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAAA
GATTTTTTTTGAAGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTTC
Found at i:8533063 original size:16 final size:15
Alignment explanation
Indices: 8533020--8533067 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
8533010 AAGATGTTAT
8533020 TTATA-TAA-AAAAA
1 TTATATTAATAAAAA
*
8533033 TTATATTTATAAAAA
1 TTATATTAATAAAAA
*
8533048 TTATATTAAATTAAAA
1 TTATATT-AATAAAAA
8533064 TTAT
1 TTAT
8533068 TGAATTAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
13 5 0.17
14 2 0.07
15 12 0.41
16 10 0.34
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
TTATATTAATAAAAA
Found at i:8533585 original size:15 final size:14
Alignment explanation
Indices: 8533565--8533594 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
8533555 ATCAGTGGAG
8533565 CAATTTGGAAAGAAA
1 CAATTTGGAAA-AAA
8533580 CAATTTGGAAAAAA
1 CAATTTGGAAAAAA
8533594 C
1 C
8533595 GCAGTCCCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.53, C:0.10, G:0.17, T:0.20
Consensus pattern (14 bp):
CAATTTGGAAAAAA
Found at i:8535521 original size:20 final size:21
Alignment explanation
Indices: 8535455--8535509 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 21
8535445 CTTAATTTTG
* * * *
8535455 ATTTTGATAACATTTGTTAGA
1 ATTTTGGTAACTTTTGATAAA
*
8535476 AGTTTGGTAACTTTTGATAAA
1 ATTTTGGTAACTTTTGATAAA
8535497 ATTTTGGT-ACTTT
1 ATTTTGGTAACTTT
8535510 CTATACAATT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
20 5 0.18
21 23 0.82
ACGTcount: A:0.29, C:0.05, G:0.16, T:0.49
Consensus pattern (21 bp):
ATTTTGGTAACTTTTGATAAA
Found at i:8535592 original size:21 final size:22
Alignment explanation
Indices: 8535568--8535612 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
8535558 TTGGTAACCA
*
8535568 TTGATACAATTTTAAT-ACTTT
1 TTGATAAAATTTTAATAACTTT
*
8535589 TTGATAAAATTTTGATAACTTT
1 TTGATAAAATTTTAATAACTTT
8535611 TT
1 TT
8535613 TATGTAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (22 bp):
TTGATAAAATTTTAATAACTTT
Found at i:8537648 original size:66 final size:67
Alignment explanation
Indices: 8537532--8537715 Score: 191
Period size: 66 Copynumber: 2.8 Consensus size: 67
8537522 ATATTACTAG
* * ** * *
8537532 TGATTTA-CTACTAAATTATTAATGATTTACTACTAAAATA-ACATTGATTTA-CAACTAATTTA
1 TGATTTATC-ACTAAATTATAAATGATTTACTACTAAATTATTGA-TAATTTATC-ACTAAGTTA
8537594 -TAAA
63 CTAAA
8537598 TGATTTATCACTAAATTATAAATGATTTACTACTAAATTATTGATAATTTATCACTAAGTTACTA
1 TGATTTATCACTAAATTATAAATGATTTACTACTAAATTATTGATAATTTATCACTAAGTTACTA
8537663 AA
66 AA
* * * * *
8537665 -GATTTATTA-TAAAGTTATAACTAATTTACTACTAAGTTATTGATTATTTAT
1 TGATTTATCACTAAA-TTATAAATGATTTACTACTAAATTATTGATAATTTAT
8537716 TACAAAATTA
Statistics
Matches: 102, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
65 4 0.04
66 91 0.89
67 7 0.07
ACGTcount: A:0.41, C:0.09, G:0.06, T:0.43
Consensus pattern (67 bp):
TGATTTATCACTAAATTATAAATGATTTACTACTAAATTATTGATAATTTATCACTAAGTTACTA
AA
Found at i:8537661 original size:33 final size:33
Alignment explanation
Indices: 8537624--8537715 Score: 91
Period size: 33 Copynumber: 2.8 Consensus size: 33
8537614 TATAAATGAT
*
8537624 TTACTACTAAATTATTGATAATTTATCACTAAG
1 TTACTACTAAATTATTGATAATTTATAACTAAG
* *
8537657 TTACTA--AAGATTTATT-ATAAAGTTATAACTAAT
1 TTACTACTAA-A-TTATTGAT-AATTTATAACTAAG
* *
8537690 TTACTACTAAGTTATTGATTATTTAT
1 TTACTACTAAATTATTGATAATTTAT
8537716 TACAAAATTA
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
31 2 0.04
32 3 0.06
33 38 0.81
34 2 0.04
35 2 0.04
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.46
Consensus pattern (33 bp):
TTACTACTAAATTATTGATAATTTATAACTAAG
Found at i:8537713 original size:22 final size:22
Alignment explanation
Indices: 8537510--8537726 Score: 154
Period size: 22 Copynumber: 9.9 Consensus size: 22
8537500 AAGTCATCAT
* * * *
8537510 TGATTTACTATTATATTACTAG
1 TGATTTACTACTAAATTATTAA
8537532 TGATTTACTACTAAATTATTAA
1 TGATTTACTACTAAATTATTAA
* ** *
8537554 TGATTTACTACTAAAATAACAT
1 TGATTTACTACTAAATTATTAA
* * *
8537576 TGATTTACAACTAATTTATAAA
1 TGATTTACTACTAAATTATTAA
*
8537598 TGATTTA-TCACTAAATTATAAA
1 TGATTTACT-ACTAAATTATTAA
*
8537620 TGATTTACTACTAAATTATTGA
1 TGATTTACTACTAAATTATTAA
* * *
8537642 TAATTTA-TCACTAAGTTACTAA
1 TGATTTACT-ACTAAATTATTAA
* *
8537664 AGATTTATTA-TAAAGTTA-TAA
1 TGATTTACTACTAAA-TTATTAA
* * *
8537685 CTAATTTACTACTAAGTTATTGA
1 -TGATTTACTACTAAATTATTAA
* * *
8537708 TTATTTATTACAAAATTAT
1 TGATTTACTACTAAATTAT
8537727 CAATTATTAA
Statistics
Matches: 153, Mismatches: 34, Indels: 16
0.75 0.17 0.08
Matches are distributed among these distances:
21 7 0.05
22 139 0.91
23 7 0.05
ACGTcount: A:0.41, C:0.09, G:0.06, T:0.44
Consensus pattern (22 bp):
TGATTTACTACTAAATTATTAA
Found at i:8537776 original size:23 final size:23
Alignment explanation
Indices: 8537750--8537795 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
8537740 ATTTACTGCT
8537750 AAATTATCAATAATTTATAACTA
1 AAATTATCAATAATTTATAACTA
* *
8537773 AAATTATTAGTAATTTATAACTA
1 AAATTATCAATAATTTATAACTA
8537796 TGTTATTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.41
Consensus pattern (23 bp):
AAATTATCAATAATTTATAACTA
Found at i:8538463 original size:11 final size:11
Alignment explanation
Indices: 8538432--8538465 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
8538422 TTAAAGTAAA
8538432 ATTGATTTATT
1 ATTGATTTATT
* *
8538443 ATTAAGTTATT
1 ATTGATTTATT
8538454 ATTGATTTATT
1 ATTGATTTATT
8538465 A
1 A
8538466 CTTAGATATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.59
Consensus pattern (11 bp):
ATTGATTTATT
Found at i:8538481 original size:22 final size:22
Alignment explanation
Indices: 8538432--8538531 Score: 62
Period size: 22 Copynumber: 4.5 Consensus size: 22
8538422 TTAAAGTAAA
*
8538432 ATTGATTTATTATTAAGTTATT
1 ATTGATTTATTATTAAGATATT
8538454 ATTGATTTATTACTT-AGATA-T
1 ATTGATTTATTA-TTAAGATATT
* * * * *
8538475 ATATGATTAACTACTAAGTTACT
1 AT-TGATTTATTATTAAGATATT
* * *
8538498 ATTTACTTT-TTATTAATATATC
1 ATTGA-TTTATTATTAAGATATT
*
8538520 CTTGATTTATTA
1 ATTGATTTATTA
8538532 ATATGCTGCT
Statistics
Matches: 57, Mismatches: 15, Indels: 12
0.68 0.18 0.14
Matches are distributed among these distances:
21 7 0.12
22 43 0.75
23 7 0.12
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (22 bp):
ATTGATTTATTATTAAGATATT
Found at i:8538957 original size:23 final size:23
Alignment explanation
Indices: 8538927--8538973 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
8538917 TTATAACTTA
* * *
8538927 TTTATTACTAATTTATGAATGAT
1 TTTATTACAAAATTATCAATGAT
8538950 TTTATTACAAAATTATCAATGAT
1 TTTATTACAAAATTATCAATGAT
8538973 T
1 T
8538974 AAACTAATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.49
Consensus pattern (23 bp):
TTTATTACAAAATTATCAATGAT
Found at i:8539027 original size:22 final size:22
Alignment explanation
Indices: 8539002--8539093 Score: 87
Period size: 22 Copynumber: 4.2 Consensus size: 22
8538992 ATTGTTACTC
*
8539002 ATTTA-TAGCTAAGTTATCAATA
1 ATTTATTA-CTAAATTATCAATA
** * *
8539024 ATTTATTACTATGTTATTAGTA
1 ATTTATTACTAAATTATCAATA
* * *
8539046 ATTTACTATTAAATTATCTATA
1 ATTTATTACTAAATTATCAATA
*
8539068 ATTTATTACTAAATTATCAATG
1 ATTTATTACTAAATTATCAATA
8539090 ATTT
1 ATTT
8539094 TCTATTATAT
Statistics
Matches: 55, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
22 53 0.96
23 2 0.04
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.49
Consensus pattern (22 bp):
ATTTATTACTAAATTATCAATA
Found at i:8539054 original size:66 final size:65
Alignment explanation
Indices: 8538978--8539123 Score: 163
Period size: 66 Copynumber: 2.2 Consensus size: 65
8538968 ATGATTAAAC
* * * *
8538978 TAATTTACTATTATATTGT-TACTCATTTA-TAGCTAAGTTATCAATAATTTAT-TACTATGTTA
1 TAATTTACTATTATATTATCTA-TAATTTATTA-CTAAATTATCAATAATTT-TCTACTATATTA
8539040 TTA
63 TTA
* * *
8539043 GTAATTTACTATTAAATTATCTATAATTTATTACTAAATTATCAATGATTTTCTATTATATTATT
1 -TAATTTACTATTATATTATCTATAATTTATTACTAAATTATCAATAATTTTCTACTATATTATT
8539108 A
65 A
8539109 TATATTTACTATTAT
1 TA-ATTTACTATTAT
8539124 GTCATAATTG
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
65 3 0.04
66 61 0.90
67 4 0.06
ACGTcount: A:0.36, C:0.08, G:0.04, T:0.52
Consensus pattern (65 bp):
TAATTTACTATTATATTATCTATAATTTATTACTAAATTATCAATAATTTTCTACTATATTATTA
Found at i:8539099 original size:44 final size:44
Alignment explanation
Indices: 8539015--8539116 Score: 116
Period size: 44 Copynumber: 2.3 Consensus size: 44
8539005 TATAGCTAAG
* ** * *
8539015 TTATCAATAATTTATTACTATGTTATTAGTAATTTACTATTAAA
1 TTATCTATAATTTATTACTAAATTATCAATAATTTACTATTAAA
* * *
8539059 TTATCTATAATTTATTACTAAATTATCAATGATTTTCTATTATA
1 TTATCTATAATTTATTACTAAATTATCAATAATTTACTATTAAA
8539103 TTAT-TATATATTTA
1 TTATCTATA-ATTTA
8539117 CTATTATGTC
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 4 0.08
44 45 0.92
ACGTcount: A:0.37, C:0.07, G:0.03, T:0.53
Consensus pattern (44 bp):
TTATCTATAATTTATTACTAAATTATCAATAATTTACTATTAAA
Found at i:8539105 original size:22 final size:22
Alignment explanation
Indices: 8539046--8539123 Score: 70
Period size: 22 Copynumber: 3.5 Consensus size: 22
8539036 GTTATTAGTA
*
8539046 ATTTACTATTAAATTATC-TAT
1 ATTTACTATTATATTATCATAT
* * *
8539067 AATTTATTACTAAATTATCA-AT
1 -ATTTACTATTATATTATCATAT
* *
8539089 GATTTTCTATTATATTATTATAT
1 -ATTTACTATTATATTATCATAT
8539112 ATTTACTATTAT
1 ATTTACTATTAT
8539124 GTCATAATTG
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
22 43 0.96
23 2 0.04
ACGTcount: A:0.37, C:0.08, G:0.01, T:0.54
Consensus pattern (22 bp):
ATTTACTATTATATTATCATAT
Found at i:8539471 original size:22 final size:22
Alignment explanation
Indices: 8539432--8539495 Score: 83
Period size: 22 Copynumber: 2.9 Consensus size: 22
8539422 ACTGAAATTG
8539432 ATTTACTATTCAAATTATCACTA
1 ATTTACTATT-AAATTATCACTA
* *
8539455 ATTTACTATTAAATTATTATTA
1 ATTTACTATTAAATTATCACTA
* *
8539477 ATTTATTATTAAGTTATCA
1 ATTTACTATTAAATTATCA
8539496 ATGTTTAACT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
22 26 0.72
23 10 0.28
ACGTcount: A:0.39, C:0.09, G:0.02, T:0.50
Consensus pattern (22 bp):
ATTTACTATTAAATTATCACTA
Done.