Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14313602
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 50000 characters in sequence are not A, C, G, or T
File 41 of 74
Found at i:8539611 original size:22 final size:22
Alignment explanation
Indices: 8539586--8539680 Score: 86
Period size: 22 Copynumber: 4.3 Consensus size: 22
8539576 ATTACAATTA
8539586 ATTTATTACTAAATTATTATGC
1 ATTTATTACTAAATTATTATGC
* * *
8539608 ATTTACTATTATATTATTATTG-
1 ATTTATTACTAAATTATTA-TGC
* * *
8539630 TTTTATTACTAAGTTATTAAT-T
1 ATTTATTACTAAATTATT-ATGC
* *
8539652 ATTAATTACTAAATTATTATTC
1 ATTTATTACTAAATTATTATGC
8539674 ATTTATT
1 ATTTATT
8539681 GAGTTTTGCA
Statistics
Matches: 56, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
21 2 0.04
22 51 0.91
23 3 0.05
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.56
Consensus pattern (22 bp):
ATTTATTACTAAATTATTATGC
Found at i:8539612 original size:44 final size:44
Alignment explanation
Indices: 8539558--8539648 Score: 119
Period size: 44 Copynumber: 2.1 Consensus size: 44
8539548 CTACTCTCTG
8539558 TTATACATTTACAATTATATTACAATTAATTTATTACTAAATTA
1 TTATACATTTACAATTATATTACAATTAATTTATTACTAAATTA
* * ** ** *
8539602 TTATGCATTTACTATTATATTATTATTGTTTTATTACTAAGTTA
1 TTATACATTTACAATTATATTACAATTAATTTATTACTAAATTA
8539646 TTA
1 TTA
8539649 ATTATTAATT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.36, C:0.08, G:0.03, T:0.53
Consensus pattern (44 bp):
TTATACATTTACAATTATATTACAATTAATTTATTACTAAATTA
Found at i:8539722 original size:22 final size:22
Alignment explanation
Indices: 8539697--8539760 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
8539687 TGCATGATTT
8539697 ACTATTAAGTTATTATTAATTA
1 ACTATTAAGTTATTATTAATTA
*
8539719 ACTATTAAGTTATTATTTATT-
1 ACTATTAAGTTATTATTAATTA
* *
8539740 ACTACTAAGTTA-TATTGATTA
1 ACTATTAAGTTATTATTAATTA
8539761 CTTTTAACTT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
20 7 0.18
21 11 0.29
22 20 0.53
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (22 bp):
ACTATTAAGTTATTATTAATTA
Found at i:8540338 original size:13 final size:14
Alignment explanation
Indices: 8540306--8540339 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
8540296 AAGCAATGAG
8540306 AAAAAATTTACTAA
1 AAAAAATTTACTAA
*
8540320 ACAAAATTTA-TAA
1 AAAAAATTTACTAA
8540333 AAAAAAT
1 AAAAAAT
8540340 AGACAATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (14 bp):
AAAAAATTTACTAA
Found at i:8546346 original size:22 final size:23
Alignment explanation
Indices: 8546307--8546364 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 23
8546297 ACGTTATTGG
* *
8546307 TGATTTACTACTAAATTATCA-A
1 TGATTTACTATTATATTATCATA
* *
8546329 TGATTTATTATTATATTATTATA
1 TGATTTACTATTATATTATCATA
8546352 T-ATTTACTATTAT
1 TGATTTACTATTAT
8546365 GTCATAATTG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
22 28 0.93
23 2 0.07
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.53
Consensus pattern (23 bp):
TGATTTACTATTATATTATCATA
Found at i:8546692 original size:11 final size:11
Alignment explanation
Indices: 8546676--8546734 Score: 66
Period size: 11 Copynumber: 5.4 Consensus size: 11
8546666 TAAAATTGAT
*
8546676 TTATTATTAAA
1 TTATTATTAAG
* *
8546687 TTATTACTAAT
1 TTATTATTAAG
*
8546698 TTACTATTAAG
1 TTATTATTAAG
8546709 TTATTATT-AG
1 TTATTATTAAG
8546719 TTTATTATTAAG
1 -TTATTATTAAG
8546731 TTAT
1 TTAT
8546735 CAATGATTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
10 2 0.05
11 36 0.90
12 2 0.05
ACGTcount: A:0.36, C:0.03, G:0.05, T:0.56
Consensus pattern (11 bp):
TTATTATTAAG
Found at i:8546902 original size:44 final size:44
Alignment explanation
Indices: 8546804--8546985 Score: 153
Period size: 44 Copynumber: 4.2 Consensus size: 44
8546794 CTCTTGTTAT
* ** * * *
8546804 TCATTTACAATTATATTACAATTAATTTATTACTAAATTAT-TA
1 TCATTTACTATTATATTATTATTGATTTATTACTAAGTTATCAA
8546847 TGCATTTACTATTATATTATTATTGATTTATTACTAAGTTATCAA
1 T-CATTTACTATTATATTATTATTGATTTATTACTAAGTTATCAA
* * * * *
8546892 TCATTGACTATTAAATTATTATTCA--TA-TACTGATTTATGC-A
1 TCATTTACTATTATATTATTATTGATTTATTACTAAGTTAT-CAA
* * *
8546933 TGATTTACTATTA-AGTTATTATTGATTAATTATTAAGTTATCAA
1 TCATTTACTATTATA-TTATTATTGATTTATTACTAAGTTATCAA
*
8546977 T-AATTACTA
1 TCATTTACTA
8546986 CAAAGTTATA
Statistics
Matches: 112, Mismatches: 19, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
40 1 0.01
41 30 0.27
42 3 0.03
43 10 0.09
44 66 0.59
45 2 0.02
ACGTcount: A:0.37, C:0.09, G:0.05, T:0.49
Consensus pattern (44 bp):
TCATTTACTATTATATTATTATTGATTTATTACTAAGTTATCAA
Found at i:8546917 original size:22 final size:22
Alignment explanation
Indices: 8546654--8546922 Score: 103
Period size: 22 Copynumber: 12.2 Consensus size: 22
8546644 TATTAATTAA
* ** *
8546654 TTACTATTAAAATAAAATTGAT
1 TTACTATTAAATTATTATTCAT
* * *
8546676 TTATTATTAAATTATTACTAAT
1 TTACTATTAAATTATTATTCAT
*
8546698 TTACTATTAAGTTATTATT-AGT
1 TTACTATTAAATTATTATTCA-T
* * * * *
8546720 TTATTATTAAGTTATCAATGAT
1 TTACTATTAAATTATTATTCAT
* * * *
8546742 TAACTATTAAGTTGTCACTT-AT
1 TTACTATTAAATTATTA-TTCAT
* * * *
8546764 TT-TTCATTAAATTTTTCTTGAT
1 TTACT-ATTAAATTATTATTCAT
* *** *
8546786 TTACTACTCTCTTGTTATTCAT
1 TTACTATTAAATTATTATTCAT
* * ** *
8546808 TTACAATTATATTACAATTAAT
1 TTACTATTAAATTATTATTCAT
* * *
8546830 TTATTACTAAATTATTATGCAT
1 TTACTATTAAATTATTATTCAT
* *
8546852 TTACTATTATATTATTATTGAT
1 TTACTATTAAATTATTATTCAT
* * * * *
8546874 TTATTACTAAGTTATCAATCAT
1 TTACTATTAAATTATTATTCAT
*
8546896 TGACTATTAAATTATTATTCAT
1 TTACTATTAAATTATTATTCAT
*
8546918 ATACT
1 TTACT
8546923 GATTTATGCA
Statistics
Matches: 175, Mismatches: 66, Indels: 12
0.69 0.26 0.05
Matches are distributed among these distances:
21 4 0.02
22 168 0.96
23 3 0.02
ACGTcount: A:0.35, C:0.09, G:0.05, T:0.51
Consensus pattern (22 bp):
TTACTATTAAATTATTATTCAT
Found at i:8546951 original size:22 final size:22
Alignment explanation
Indices: 8546933--8546975 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8546923 GATTTATGCA
* *
8546933 TGATTTACTATTAAGTTATTAT
1 TGATTAACTATTAAGTTATCAT
*
8546955 TGATTAATTATTAAGTTATCA
1 TGATTAACTATTAAGTTATCA
8546976 ATAATTACTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.35, C:0.05, G:0.09, T:0.51
Consensus pattern (22 bp):
TGATTAACTATTAAGTTATCAT
Found at i:8546982 original size:22 final size:22
Alignment explanation
Indices: 8546941--8546982 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
8546931 CATGATTTAC
* * *
8546941 TATTAAGTTATTATTGATTAAT
1 TATTAAGTTATCAATAATTAAT
8546963 TATTAAGTTATCAATAATTA
1 TATTAAGTTATCAATAATTA
8546983 CTACAAAGTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.50
Consensus pattern (22 bp):
TATTAAGTTATCAATAATTAAT
Found at i:8553141 original size:20 final size:19
Alignment explanation
Indices: 8553116--8553160 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
8553106 AAATCTAAGT
8553116 TTTATTGTAT-TTGAATTTA
1 TTTATTGTATGTT-AATTTA
*
8553135 GTTTATTTTATGTTAATTTA
1 -TTTATTGTATGTTAATTTA
8553155 TTTATT
1 TTTATT
8553161 TAATAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 6 0.26
20 15 0.65
21 2 0.09
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.67
Consensus pattern (19 bp):
TTTATTGTATGTTAATTTA
Found at i:8555941 original size:53 final size:53
Alignment explanation
Indices: 8555814--8555941 Score: 158
Period size: 51 Copynumber: 2.5 Consensus size: 53
8555804 TATACAAAAA
* *
8555814 AATAATTTTTAA-ATATA-TAATAACAAATTATTATTTGATATAAAAATAATTTT
1 AATAATTTTTAATATTTATTAAT-A-AAAGTATTATTTGATATAAAAATAATTTT
* *
8555867 AAT-ATTTTTCA-GTTTATTAATAAAAGTATTATTTGATAT-AAAATAATTTT
1 AATAATTTTTAATATTTATTAATAAAAGTATTATTTGATATAAAAATAATTTT
8555917 AATAATTTTTAATTATTTATTAATA
1 AATAATTTTTAA-TATTTATTAATA
8555942 TCACAAATAT
Statistics
Matches: 65, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
50 14 0.22
51 23 0.35
52 11 0.17
53 17 0.26
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (53 bp):
AATAATTTTTAATATTTATTAATAAAAGTATTATTTGATATAAAAATAATTTT
Found at i:8556118 original size:21 final size:20
Alignment explanation
Indices: 8556088--8556128 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
8556078 TGATTTTAAT
*
8556088 CTTACCGTTATAGTAATCAAA
1 CTTACCGTTAGAGTAA-CAAA
*
8556109 CTTACTGTTAGAGTAACAAA
1 CTTACCGTTAGAGTAACAAA
8556129 TCTCATCTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (20 bp):
CTTACCGTTAGAGTAACAAA
Found at i:8559607 original size:12 final size:12
Alignment explanation
Indices: 8559590--8559616 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
8559580 AACGAAAGCA
8559590 ACACTTGAGAGT
1 ACACTTGAGAGT
8559602 ACACTTGAGAGT
1 ACACTTGAGAGT
8559614 ACA
1 ACA
8559617 AGTGAACCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (12 bp):
ACACTTGAGAGT
Found at i:8564893 original size:156 final size:156
Alignment explanation
Indices: 8564606--8564915 Score: 575
Period size: 156 Copynumber: 2.0 Consensus size: 156
8564596 CCAGAAAACC
* *
8564606 AAGAACACACTTTGGCCCATGCAAAACCAGAAAACTAGAAAAAGGTTTTCTTGATTTTCTAGAGT
1 AAGAACACACTTTGGCCCATGCAAAACCAGAAAACTAGAAAAAGGATTTCTTCATTTTCTAGAGT
* *
8564671 ATCAAGAGAAAGAACAAGTTTATGCCATGTATGTTGAGAATATTGATTTTAGTTTCAATCATACA
66 ATCAAGAGAAAGAACAAGTTTATGCCATGTATGTTGAGAATATCGATTTTAGTTTCAATCACACA
8564736 CAAGTAAATGGGTTTATAAGATAATG
131 CAAGTAAATGGGTTTATAAGATAATG
*
8564762 AAGAACACCCTTTGGCCCATGCAAAACCAGAAAACTAGAAAAAGGATTTCTTCATTTTCTAGAGT
1 AAGAACACACTTTGGCCCATGCAAAACCAGAAAACTAGAAAAAGGATTTCTTCATTTTCTAGAGT
8564827 ATCAAGAGAAAGAACAAGTTTATGCCATGTATGTTGAGAATATCGATTTTAGTTTCAATCACACA
66 ATCAAGAGAAAGAACAAGTTTATGCCATGTATGTTGAGAATATCGATTTTAGTTTCAATCACACA
8564892 CAAGTAAATGGGTTTATAAGATAA
131 CAAGTAAATGGGTTTATAAGATAA
8564916 GGATTTAAGG
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
156 149 1.00
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.29
Consensus pattern (156 bp):
AAGAACACACTTTGGCCCATGCAAAACCAGAAAACTAGAAAAAGGATTTCTTCATTTTCTAGAGT
ATCAAGAGAAAGAACAAGTTTATGCCATGTATGTTGAGAATATCGATTTTAGTTTCAATCACACA
CAAGTAAATGGGTTTATAAGATAATG
Found at i:8565210 original size:253 final size:253
Alignment explanation
Indices: 8564762--8565266 Score: 902
Period size: 253 Copynumber: 2.0 Consensus size: 253
8564752 TAAGATAATG
*
8564762 AAGAACACCCTTTGGCCCATGCAAAACCAGAAAACTAGAAAAAGGATTTCTTCATTTTCTAGAGT
1 AAGAACACCCTTTGGCCCATGCAAAACCAAAAAACTAGAAAAAGGATTTCTTCATTTTCTAGAGT
8564827 ATCAAGAGAAAGAACAAGTTTATGCCATGTATGTTGAGAATATCGATTTTAGTTTCAATCACACA
66 ATCAAGAGAAAGAACAAGTTTATGCCATGTATGTTGAGAATATCGATTTTAGTTTCAATCACACA
*
8564892 CAAGTAAATGGGTTTATAAGATAAGGATTTAAGGTTTTCAATGATTAAAGTGAATTCGAGATTCT
131 CAAGTAAATGGGCTTATAAGATAAGGATTTAAGGTTTTCAATGATTAAAGTGAATTCGAGATTCT
*
8564957 AAGAAATAGATATCCAAGAATACTTAAAGATTCTCGAATATTCATTTTTAAGAATACC
196 AAGAAATAGATATCCAAGAATACTTAAAGATTCTCAAATATTCATTTTTAAGAATACC
* * * *
8565015 AAGAACACCCTTTGGCCCATGCAAAAGCAAAAAACTAGAAAATGGTTTTCTTGATTTTCTAGAGT
1 AAGAACACCCTTTGGCCCATGCAAAACCAAAAAACTAGAAAAAGGATTTCTTCATTTTCTAGAGT
* *
8565080 ATCAAGAGAAAGAACAAGTTTATGCCATGTATGTTGAGAATATTGATTTTAGTTTCAATCATACA
66 ATCAAGAGAAAGAACAAGTTTATGCCATGTATGTTGAGAATATCGATTTTAGTTTCAATCACACA
* *
8565145 CAAGTAAATGGGCTTATAAGATAATGATTTAAGGTTTTCAGTGATTAAAGTGAATTCGAGATTCT
131 CAAGTAAATGGGCTTATAAGATAAGGATTTAAGGTTTTCAATGATTAAAGTGAATTCGAGATTCT
*
8565210 AAGAAATAGATATCCAAGAATACTTAAAGATTCTCAAATATTCATTTTTGAGAATAC
196 AAGAAATAGATATCCAAGAATACTTAAAGATTCTCAAATATTCATTTTTAAGAATAC
8565267 TCAAAACTTC
Statistics
Matches: 240, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
253 240 1.00
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.31
Consensus pattern (253 bp):
AAGAACACCCTTTGGCCCATGCAAAACCAAAAAACTAGAAAAAGGATTTCTTCATTTTCTAGAGT
ATCAAGAGAAAGAACAAGTTTATGCCATGTATGTTGAGAATATCGATTTTAGTTTCAATCACACA
CAAGTAAATGGGCTTATAAGATAAGGATTTAAGGTTTTCAATGATTAAAGTGAATTCGAGATTCT
AAGAAATAGATATCCAAGAATACTTAAAGATTCTCAAATATTCATTTTTAAGAATACC
Found at i:8566199 original size:5 final size:5
Alignment explanation
Indices: 8566191--8566220 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
8566181 CTATCCTATT
8566191 TTTTA TTTTA TTTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA -TTTTA TTTTA TTTTA TTTT
8566221 TTTGTTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:8566212 original size:16 final size:16
Alignment explanation
Indices: 8566191--8566221 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
8566181 CTATCCTATT
8566191 TTTTATTTTATTTTTA
1 TTTTATTTTATTTTTA
8566207 TTTTATTTTATTTTT
1 TTTTATTTTATTTTT
8566222 TTGTTAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTATTTTATTTTTA
Found at i:8566221 original size:11 final size:11
Alignment explanation
Indices: 8566190--8566220 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
8566180 CCTATCCTAT
8566190 TTTTTATTTTA
1 TTTTTATTTTA
8566201 TTTTTATTTTA
1 TTTTTATTTTA
8566212 -TTTTATTTT
1 TTTTTATTTT
8566221 TTTGTTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTTATTTTA
Found at i:8567137 original size:41 final size:41
Alignment explanation
Indices: 8567080--8567170 Score: 146
Period size: 41 Copynumber: 2.2 Consensus size: 41
8567070 ATCCACACGT
* * *
8567080 CAACCCGTTGACCCGACCCAAGGTCCATGCACTTGACTCGA
1 CAACCCGTCGACCCGACCCAAGGTCAATGCACTCGACTCGA
*
8567121 CAACCCGTCGACCCGACCCAGGGTCAATGCACTCGACTCGA
1 CAACCCGTCGACCCGACCCAAGGTCAATGCACTCGACTCGA
8567162 CAACCCGTC
1 CAACCCGTC
8567171 TTCCAATTGA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.24, C:0.42, G:0.20, T:0.14
Consensus pattern (41 bp):
CAACCCGTCGACCCGACCCAAGGTCAATGCACTCGACTCGA
Found at i:8567406 original size:20 final size:18
Alignment explanation
Indices: 8567364--8567409 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 18
8567354 ATGCATATTA
8567364 AAAT-ATTTATTTTTGTT
1 AAATAATTTATTTTTGTT
8567381 AGAATAATTTATTTTTGTGAT
1 A-AATAATTTATTTTTGT--T
8567402 AAATAATT
1 AAATAATT
8567410 CATTAGTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 1 0.04
18 3 0.12
19 12 0.48
20 7 0.28
21 2 0.08
ACGTcount: A:0.37, C:0.00, G:0.09, T:0.54
Consensus pattern (18 bp):
AAATAATTTATTTTTGTT
Found at i:8567496 original size:20 final size:21
Alignment explanation
Indices: 8567471--8567517 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
8567461 TTTTAATTTT
8567471 AAAATAAACTTTA-AAAAATA
1 AAAATAAACTTTATAAAAATA
*
8567491 AAAATAAACTTTATAATAATA
1 AAAATAAACTTTATAAAAATA
*
8567512 ATAATA
1 AAAATA
8567518 TAAAGTAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 13 0.54
21 11 0.46
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (21 bp):
AAAATAAACTTTATAAAAATA
Found at i:8572300 original size:30 final size:30
Alignment explanation
Indices: 8572256--8572319 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 30
8572246 ATTTAGACAT
*
8572256 CTTTCCAACATTATAAAATGACT-ATTTAC
1 CTTTCCAAAATTATAAAATGACTAATTTAC
*
8572285 CTTTCTCAAAATTATAAAATGATTAATTTAC
1 CTTTC-CAAAATTATAAAATGACTAATTTAC
8572316 CTTT
1 CTTT
8572320 TTTAACATTC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 5 0.16
30 16 0.52
31 10 0.32
ACGTcount: A:0.38, C:0.17, G:0.03, T:0.42
Consensus pattern (30 bp):
CTTTCCAAAATTATAAAATGACTAATTTAC
Found at i:8572405 original size:16 final size:16
Alignment explanation
Indices: 8572356--8572406 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
8572346 TTTTTTAATG
*
8572356 AAAATAAAATAACTTAA
1 AAAAT-AAATAATTTAA
*
8572373 AATATAAATAATTTAA
1 AAAATAAATAATTTAA
8572389 AAAATAAA-AATTATAA
1 AAAATAAATAATT-TAA
8572405 AA
1 AA
8572407 TTCGAAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
15 4 0.13
16 22 0.73
17 4 0.13
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (16 bp):
AAAATAAATAATTTAA
Found at i:8584276 original size:241 final size:243
Alignment explanation
Indices: 8583819--8584279 Score: 845
Period size: 243 Copynumber: 1.9 Consensus size: 243
8583809 GAGATCTATT
*
8583819 TTTTAGGAAAAAATTAGAAAAAAAAAACATTTCATTTTTTCTTACTATTTTAAATACAGTTTAAA
1 TTTTAGGAAAAAATT--AAAAAAAAAACATTTCATTTTTTCCTACTATTTTAAATACAGTTTAAA
8583884 AACAAAAAGTAAGAAAATAAAAATTAAAAGTTCTAGTATTTTTTTCACAATCATTAAATTTTCAA
64 AACAAAAAGTAAGAAAATAAAAATTAAAAGTTCTAGTATTTTTTTCACAATCATTAAATTTTCAA
8583949 TTATTCAACATTAATCTACAAAAAAAAAAAATCACCACTCCATACTATAATACTCATGAAATTCA
129 TTATTCAACATTAATCTAC-AAAAAAAAAAATCACCACTCCATACTATAATACTCATGAAATTCA
8584014 AAACCCAAAACTAAACCCTATAAATAAAAAACATTTCATTTTTTTTTTATA
193 AAACCCAAAACTAAACCCTATAAATAAAAAACATTTCATTTTTTTTTTATA
8584065 TTTTAGGAAAAAATT-AAAAAAAAACATTTCATTTTTTCCTACTATTTTAAATACAGTTTAAAAA
1 TTTTAGGAAAAAATTAAAAAAAAAACATTTCATTTTTTCCTACTATTTTAAATACAGTTTAAAAA
* *
8584129 TAAAAAGTAAGAAAATAAAAATTAAAAGTTCTAGTATTTTTTTCGCAATCATTAAATTTTCAATT
66 CAAAAAGTAAGAAAATAAAAATTAAAAGTTCTAGTATTTTTTTCACAATCATTAAATTTTCAATT
*
8584194 ATTCAATATTAATCTAC-AAAAAAAAAATCACCACTCCATACTATAATACTCATGAAATTCAAAA
131 ATTCAACATTAATCTACAAAAAAAAAAATCACCACTCCATACTATAATACTCATGAAATTCAAAA
8584258 CCCAAAACTAAACCCTATAAAT
196 CCCAAAACTAAACCCTATAAAT
8584280 TTTTGTTTGT
Statistics
Matches: 211, Mismatches: 4, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
241 69 0.33
243 127 0.60
246 15 0.07
ACGTcount: A:0.48, C:0.14, G:0.04, T:0.34
Consensus pattern (243 bp):
TTTTAGGAAAAAATTAAAAAAAAAACATTTCATTTTTTCCTACTATTTTAAATACAGTTTAAAAA
CAAAAAGTAAGAAAATAAAAATTAAAAGTTCTAGTATTTTTTTCACAATCATTAAATTTTCAATT
ATTCAACATTAATCTACAAAAAAAAAAATCACCACTCCATACTATAATACTCATGAAATTCAAAA
CCCAAAACTAAACCCTATAAATAAAAAACATTTCATTTTTTTTTTATA
Found at i:8585085 original size:16 final size:17
Alignment explanation
Indices: 8585054--8585086 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
8585044 GAGAAAGTAG
*
8585054 TTGAATGGAGAAAAAAA
1 TTGAATGGAAAAAAAAA
8585071 TTGAAT-GAAAAAAAAA
1 TTGAATGGAAAAAAAAA
8585087 AAAAAAAAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.64, C:0.00, G:0.18, T:0.18
Consensus pattern (17 bp):
TTGAATGGAAAAAAAAA
Found at i:8585086 original size:17 final size:17
Alignment explanation
Indices: 8585054--8585087 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8585044 GAGAAAGTAG
* *
8585054 TTGAATGGAGAAAAAAA
1 TTGAATGAAAAAAAAAA
8585071 TTGAATGAAAAAAAAAA
1 TTGAATGAAAAAAAAAA
8585088 AAAAAAAGAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.18, T:0.18
Consensus pattern (17 bp):
TTGAATGAAAAAAAAAA
Found at i:8585809 original size:22 final size:22
Alignment explanation
Indices: 8585774--8585876 Score: 64
Period size: 22 Copynumber: 4.7 Consensus size: 22
8585764 TTATCATTAT
*
8585774 GTTATCAATGATTTACTACTAA
1 GTTATCAATAATTTACTACTAA
* *
8585796 GTTATTAATAATTTATTACTAA
1 GTTATCAATAATTTACTACTAA
** * * *
8585818 AATAACATTAATTTACAACTAA
1 GTTATCAATAATTTACTACTAA
* * *
8585840 TTTATAAATGATTTA-TCACTAA
1 GTTATCAATAATTTACT-ACTAA
* * *
8585862 ATTATAAATGATTTA
1 GTTATCAATAATTTA
8585877 ACATTAAATT
Statistics
Matches: 62, Mismatches: 18, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
22 62 1.00
ACGTcount: A:0.44, C:0.09, G:0.05, T:0.43
Consensus pattern (22 bp):
GTTATCAATAATTTACTACTAA
Found at i:8585876 original size:44 final size:44
Alignment explanation
Indices: 8585775--8585909 Score: 132
Period size: 44 Copynumber: 3.1 Consensus size: 44
8585765 TATCATTATG
* * * *
8585775 TTATCAATGATTTACTACTAAGTTATTAATAATTTATTACTAAA
1 TTATAAATGATTTACAACTAAATTATTAATAATTTATCACTAAA
* * * *
8585819 --ATAACATTAATTTACAACTAATTTATAAATGATTTATCACTAAA
1 TTATAA-A-TGATTTACAACTAAATTATTAATAATTTATCACTAAA
* *
8585863 TTATAAATGATTTA-ACATTAAATTATTGATAATTTATCACTAAA
1 TTATAAATGATTTACA-ACTAAATTATTAATAATTTATCACTAAA
8585907 TTA
1 TTA
8585910 CTAGAAATTT
Statistics
Matches: 73, Mismatches: 13, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
42 3 0.04
43 2 0.03
44 63 0.86
45 1 0.01
46 4 0.05
ACGTcount: A:0.44, C:0.09, G:0.04, T:0.43
Consensus pattern (44 bp):
TTATAAATGATTTACAACTAAATTATTAATAATTTATCACTAAA
Found at i:8585884 original size:22 final size:22
Alignment explanation
Indices: 8585835--8585909 Score: 87
Period size: 22 Copynumber: 3.4 Consensus size: 22
8585825 TTAATTTACA
* *
8585835 ACTAATTTATAAATGATTTATC
1 ACTAAATTATAAATGATTTAAC
8585857 ACTAAATTATAAATGATTTAAC
1 ACTAAATTATAAATGATTTAAC
* ** * *
8585879 ATTAAATTATTGATAATTTATC
1 ACTAAATTATAAATGATTTAAC
8585901 ACTAAATTA
1 ACTAAATTA
8585910 CTAGAAATTT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 45 1.00
ACGTcount: A:0.45, C:0.08, G:0.04, T:0.43
Consensus pattern (22 bp):
ACTAAATTATAAATGATTTAAC
Found at i:8585918 original size:22 final size:21
Alignment explanation
Indices: 8585850--8585921 Score: 74
Period size: 22 Copynumber: 3.3 Consensus size: 21
8585840 TTTATAAATG
8585850 ATTTATCACTAAATTATA-AA
1 ATTTATCACTAAATTATAGAA
* * *
8585870 TGATTTAACATTAAATTATTGATA
1 --ATTTATCACTAAATTATAGA-A
8585894 ATTTATCACTAAATTACTAGAA
1 ATTTATCACTAAATTA-TAGAA
8585916 ATTTAT
1 ATTTAT
8585922 TATAAAGTTA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
22 36 0.88
23 4 0.10
24 1 0.02
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.43
Consensus pattern (21 bp):
ATTTATCACTAAATTATAGAA
Found at i:8586012 original size:22 final size:22
Alignment explanation
Indices: 8585986--8586069 Score: 87
Period size: 22 Copynumber: 3.8 Consensus size: 22
8585976 TCAATTGTTA
**
8585986 ACTAATTTATTGCTAAATTATC
1 ACTAATTTATAACTAAATTATC
* *
8586008 TCTAATTTACAACTAAATTATC
1 ACTAATTTATAACTAAATTATC
** *
8586030 ACTAATTTATAACTATTTTATT
1 ACTAATTTATAACTAAATTATC
* *
8586052 ACTGATTTATTACTAAAT
1 ACTAATTTATAACTAAAT
8586070 CCCCAATGAT
Statistics
Matches: 49, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 49 1.00
ACGTcount: A:0.38, C:0.13, G:0.02, T:0.46
Consensus pattern (22 bp):
ACTAATTTATAACTAAATTATC
Found at i:8586044 original size:11 final size:11
Alignment explanation
Indices: 8585984--8586067 Score: 60
Period size: 11 Copynumber: 7.6 Consensus size: 11
8585974 TATCAATTGT
8585984 TAACTAATTTA
1 TAACTAATTTA
** *
8585995 TTGCTAAATTA
1 TAACTAATTTA
**
8586006 TCTCTAATTTA
1 TAACTAATTTA
* *
8586017 CAACTAAATTA
1 TAACTAATTTA
*
8586028 TCACTAATTTA
1 TAACTAATTTA
*
8586039 TAACTATTTTA
1 TAACTAATTTA
* *
8586050 TTACTGATTTA
1 TAACTAATTTA
*
8586061 TTACTAA
1 TAACTAA
8586068 ATCCCCAATG
Statistics
Matches: 54, Mismatches: 19, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
11 54 1.00
ACGTcount: A:0.38, C:0.13, G:0.02, T:0.46
Consensus pattern (11 bp):
TAACTAATTTA
Found at i:8586878 original size:18 final size:18
Alignment explanation
Indices: 8586852--8586886 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8586842 ACTGACAATA
*
8586852 TATAAGATAATTTTATTT
1 TATAAGATAATATTATTT
*
8586870 TATACGATAATATTATT
1 TATAAGATAATATTATT
8586887 ATTTATTCAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.51
Consensus pattern (18 bp):
TATAAGATAATATTATTT
Found at i:8587131 original size:22 final size:22
Alignment explanation
Indices: 8587062--8587245 Score: 90
Period size: 22 Copynumber: 8.4 Consensus size: 22
8587052 TACTATTATG
* * *
8587062 TTATTAATCATTTATTACTAAG
1 TTATCAATAATTTATTACTAAA
* * *
8587084 CTACCAATAATTTAATACTAAA
1 TTATCAATAATTTATTACTAAA
*
8587106 TTATCAATAATTTATTAC-ATAT
1 TTATCAATAATTTATTACTA-AA
* * *
8587128 TTATAAATGATTTA-TCCTTAAA
1 TTATCAATAATTTATTAC-TAAA
* * ** *
8587150 TTATGAATTATTTATCGCTAAG
1 TTATCAATAATTTATTACTAAA
**
8587172 TTATTGATAATTTATTA-TAAA
1 TTATCAATAATTTATTACTAAA
* * *
8587193 GTTAT-AACTTATTTATTATTAAT
1 -TTATCAA-TAATTTATTACTAAA
* *
8587216 TTATGAATGATTTATTA-TAAAA
1 TTATCAATAATTTATTACT-AAA
8587238 TTATCAAT
1 TTATCAAT
8587246 GATTAACTAA
Statistics
Matches: 122, Mismatches: 31, Indels: 18
0.71 0.18 0.11
Matches are distributed among these distances:
21 8 0.07
22 107 0.88
23 7 0.06
ACGTcount: A:0.40, C:0.08, G:0.05, T:0.47
Consensus pattern (22 bp):
TTATCAATAATTTATTACTAAA
Found at i:8587163 original size:66 final size:66
Alignment explanation
Indices: 8587093--8587245 Score: 148
Period size: 66 Copynumber: 2.3 Consensus size: 66
8587083 GCTACCAATA
* * *
8587093 ATTTAATACTAAATTATCAATAATTTATTACATATTTATAAATGATTTATCCTTAAATTATGAAT
1 ATTTAATACTAAATTATCAATAATTTATTACAAAGTTATAAATGATTTATCATTAAATTATGAAT
*
8587158 T
66 G
* * ** * * * * *
8587159 ATTT-ATCGCTAAGTTATTGATAATTTATTATAAAGTTATAACTTATTTATTATTAATTTATGAA
1 ATTTAAT-ACTAAATTATCAATAATTTATTACAAAGTTATAAATGATTTATCATTAAATTATGAA
8587223 TG
65 TG
*
8587225 ATTTATTA-TAAAATTATCAAT
1 ATTTAATACT-AAATTATCAAT
8587246 GATTAACTAA
Statistics
Matches: 66, Mismatches: 18, Indels: 6
0.73 0.20 0.07
Matches are distributed among these distances:
65 3 0.05
66 62 0.94
67 1 0.02
ACGTcount: A:0.41, C:0.06, G:0.05, T:0.48
Consensus pattern (66 bp):
ATTTAATACTAAATTATCAATAATTTATTACAAAGTTATAAATGATTTATCATTAAATTATGAAT
G
Found at i:8587345 original size:22 final size:22
Alignment explanation
Indices: 8587320--8587616 Score: 110
Period size: 22 Copynumber: 13.8 Consensus size: 22
8587310 CGTTATTGAC
*
8587320 GATTTACTACTAAATTATCAAT
1 GATTTACTATTAAATTATCAAT
* * *
8587342 GATTTATTATTATATTATTATAT
1 GATTTACTATTAAATTATCA-AT
** *
8587365 -ATTTACTATTATGTCAT-AATT
1 GATTTACTATTAAATTATCAA-T
* * * *
8587386 GATTTACAATTTAATTTTCGAT
1 GATTTACTATTAAATTATCAAT
* * * * *
8587408 TATATACTA-CAAATTATTATT
1 GATTTACTATTAAATTATCAAT
* * *
8587429 AATTTAGTATTAAATTATCCAT
1 GATTTACTATTAAATTATCAAT
* * ** * *
8587451 GATTCATTACCAAGTTATCATT
1 GATTTACTATTAAATTATCAAT
* *
8587473 AATTTA-TATTACATTATCCAA-
1 GATTTACTATTAAATTAT-CAAT
* *
8587494 -ATTTACTATTAATTTATCATT
1 GATTTACTATTAAATTATCAAT
* * * **
8587515 GATTAACAATTAAGTTATTGAT
1 GATTTACTATTAAATTATCAAT
*
8587537 GATTTACTATTAAATTAT-ATT
1 GATTTACTATTAAATTATCAAT
* **
8587558 GATTTACT-TTTAA-CGT-AAT
1 GATTTACTATTAAATTATCAAT
* *
8587577 GAGTAACTATTAAATTATCAAT
1 GATTTACTATTAAATTATCAAT
* * *
8587599 TATTTAATATTAAGTTAT
1 GATTTACTATTAAATTAT
8587617 TATTCACAAT
Statistics
Matches: 190, Mismatches: 73, Indels: 24
0.66 0.25 0.08
Matches are distributed among these distances:
19 9 0.05
20 16 0.08
21 40 0.21
22 122 0.64
23 3 0.02
ACGTcount: A:0.38, C:0.09, G:0.06, T:0.48
Consensus pattern (22 bp):
GATTTACTATTAAATTATCAAT
Found at i:8587710 original size:22 final size:22
Alignment explanation
Indices: 8587685--8587747 Score: 90
Period size: 22 Copynumber: 2.9 Consensus size: 22
8587675 AATAAAATTG
*
8587685 ATTTATTATTAAATTATCACTA
1 ATTTATTATTAAGTTATCACTA
* * *
8587707 ATTTACTATTAAGTTATTATTA
1 ATTTATTATTAAGTTATCACTA
8587729 ATTTATTATTAAGTTATCA
1 ATTTATTATTAAGTTATCA
8587748 ATGGTTAACT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.38, C:0.06, G:0.03, T:0.52
Consensus pattern (22 bp):
ATTTATTATTAAGTTATCACTA
Found at i:8587729 original size:11 final size:11
Alignment explanation
Indices: 8587687--8587745 Score: 64
Period size: 11 Copynumber: 5.4 Consensus size: 11
8587677 TAAAATTGAT
*
8587687 TTATTATTAAA
1 TTATTATTAAG
* * *
8587698 TTATCACTAAT
1 TTATTATTAAG
*
8587709 TTACTATTAAG
1 TTATTATTAAG
*
8587720 TTATTATTAAT
1 TTATTATTAAG
8587731 TTATTATTAAG
1 TTATTATTAAG
8587742 TTAT
1 TTAT
8587746 CAATGGTTAA
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 38 1.00
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.54
Consensus pattern (11 bp):
TTATTATTAAG
Found at i:8587864 original size:22 final size:22
Alignment explanation
Indices: 8587839--8587925 Score: 70
Period size: 22 Copynumber: 4.0 Consensus size: 22
8587829 ATTACAATTA
8587839 ATTTATTACTAAATTATTA-TG
1 ATTTATTACTAAATTATTATTG
* * *
8587860 CATTTACTATTATATTATTATTG
1 -ATTTATTACTAAATTATTATTG
* *
8587883 ATTTATTACTAAGTTATCAATT-
1 ATTTATTACTAAATTAT-TATTG
* * *
8587905 ATTGACTATTAAATTATTATT
1 ATTTATTACTAAATTATTATT
8587926 CATATATTGA
Statistics
Matches: 50, Mismatches: 13, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
21 3 0.06
22 42 0.84
23 5 0.10
ACGTcount: A:0.36, C:0.07, G:0.05, T:0.53
Consensus pattern (22 bp):
ATTTATTACTAAATTATTATTG
Found at i:8587913 original size:44 final size:44
Alignment explanation
Indices: 8587817--8587999 Score: 130
Period size: 44 Copynumber: 4.2 Consensus size: 44
8587807 CTTGTTATTC
* ** * * * *
8587817 ATTTACAATTATATTACAATTAATTTATTACTAAATTAT-TATGC
1 ATTTACTATTATATTATTATTGATTTATTACTAAGTTATCAAT-A
*
8587861 ATTTACTATTATATTATTATTGATTTATTACTAAGTTATCAATT
1 ATTTACTATTATATTATTATTGATTTATTACTAAGTTATCAATA
* * * * *
8587905 ATTGACTATTAAATTATTATTCATATATTGA-T---TTATGC-ATG
1 ATTTACTATTATATTATTATTGATTTATT-ACTAAGTTAT-CAATA
* * *
8587946 ATTTACTATTA-AGTTATTATTGGTTAATTATTAAGTTATCAATA
1 ATTTACTATTATA-TTATTATTGATTTATTACTAAGTTATCAATA
8587990 A-TTACTATTA
1 ATTTACTATTA
8588000 AGTTATACTG
Statistics
Matches: 112, Mismatches: 18, Indels: 19
0.75 0.12 0.13
Matches are distributed among these distances:
40 2 0.02
41 29 0.26
42 1 0.01
43 10 0.09
44 67 0.60
45 3 0.03
ACGTcount: A:0.37, C:0.07, G:0.06, T:0.50
Consensus pattern (44 bp):
ATTTACTATTATATTATTATTGATTTATTACTAAGTTATCAATA
Found at i:8587962 original size:22 final size:21
Alignment explanation
Indices: 8587852--8588005 Score: 59
Period size: 22 Copynumber: 7.2 Consensus size: 21
8587842 TATTACTAAA
*
8587852 TTATTATGCATTTACTATTATA-
1 TTATCATG-ATTTACTATTA-AG
* * *
8587874 TTATTATTGATTTATTACTAAG
1 TTATCA-TGATTTACTATTAAG
* * *
8587896 TTATCAATTATTGACTATTAAA
1 TTATC-ATGATTTACTATTAAG
* *
8587918 TTAT--T-ATTCATA-TATTGAT
1 TTATCATGATT--TACTATTAAG
8587937 TTATGCATGATTTACTATTAAG
1 TTAT-CATGATTTACTATTAAG
* * * *
8587959 TTATTATTGGTTAATTATTAAG
1 TTATCA-TGATTTACTATTAAG
*
8587981 TTATCAAT-AATTACTATTAAG
1 TTATC-ATGATTTACTATTAAG
8588002 TTAT
1 TTAT
8588006 ACTGATTACT
Statistics
Matches: 98, Mismatches: 22, Indels: 25
0.68 0.15 0.17
Matches are distributed among these distances:
18 3 0.03
19 10 0.10
20 1 0.01
21 17 0.17
22 60 0.61
23 7 0.07
ACGTcount: A:0.34, C:0.06, G:0.08, T:0.51
Consensus pattern (21 bp):
TTATCATGATTTACTATTAAG
Found at i:8590065 original size:16 final size:17
Alignment explanation
Indices: 8590046--8590090 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 17
8590036 AAATTTTCTT
*
8590046 TTATTTAAAAATTTT-A
1 TTATATAAAAATTTTGA
* *
8590062 TTATACATAAATTTTGA
1 TTATATAAAAATTTTGA
8590079 TTATATAAAAAT
1 TTATATAAAAAT
8590091 ATCACAATAC
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
16 12 0.52
17 11 0.48
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (17 bp):
TTATATAAAAATTTTGA
Found at i:8591430 original size:188 final size:188
Alignment explanation
Indices: 8591113--8591483 Score: 715
Period size: 188 Copynumber: 2.0 Consensus size: 188
8591103 TCAGTAAATA
* *
8591113 GAAGAAAATCGTTTAGAGCACATTCATCCTCCCATTGAAGCTCTTTCCACCATTTTTTCTCTCCT
1 GAAGAAAATCGTTTAGAGCACATTCATCCTCCCATTGAAGCTCTTTCCACCATTCTTTCTCTCCC
8591178 CTAATGCTGATTTTGTTTTCCTTTGCACTGTTGGAGTCGAGTGGAAGTCTTTTCAGCTTTGGGCA
66 CTAATGCTGATTTTGTTTTCCTTTGCACTGTTGGAGTCGAGTGGAAGTCTTTTCAGCTTTGGGCA
8591243 CCGATGAACATAAATTTCTTTCAAACATGAGAAGGGAAGTGTATCCCAGTAAAGCAGG
131 CCGATGAACATAAATTTCTTTCAAACATGAGAAGGGAAGTGTATCCCAGTAAAGCAGG
8591301 GAAGAAAATCGTTTAGAGCACATTCATCCTCCCATTGAAGCTCTTTCCACCATTCTTTCTCTCCC
1 GAAGAAAATCGTTTAGAGCACATTCATCCTCCCATTGAAGCTCTTTCCACCATTCTTTCTCTCCC
*
8591366 CTAATGCTGATTTTGTTTTCCTTTGCACTGTTGGAGTTGAGTGGAAGTCTTTTCAGCTTTGGGCA
66 CTAATGCTGATTTTGTTTTCCTTTGCACTGTTGGAGTCGAGTGGAAGTCTTTTCAGCTTTGGGCA
8591431 CCGATGAACATAAATTTCTTTCAAACATGAGAAGGGAAGTGTATCCCAGTAAA
131 CCGATGAACATAAATTTCTTTCAAACATGAGAAGGGAAGTGTATCCCAGTAAA
8591484 TGCTCTTCAA
Statistics
Matches: 180, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
188 180 1.00
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.34
Consensus pattern (188 bp):
GAAGAAAATCGTTTAGAGCACATTCATCCTCCCATTGAAGCTCTTTCCACCATTCTTTCTCTCCC
CTAATGCTGATTTTGTTTTCCTTTGCACTGTTGGAGTCGAGTGGAAGTCTTTTCAGCTTTGGGCA
CCGATGAACATAAATTTCTTTCAAACATGAGAAGGGAAGTGTATCCCAGTAAAGCAGG
Found at i:8594829 original size:20 final size:19
Alignment explanation
Indices: 8594804--8594848 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
8594794 AAATTTAAGT
8594804 TTTATTGTAT-TTGAATTTA
1 TTTATTGTATGTT-AATTTA
*
8594823 GTTTATTTTATGTTAATTTA
1 -TTTATTGTATGTTAATTTA
8594843 TTTATT
1 TTTATT
8594849 TAATAATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 6 0.26
20 15 0.65
21 2 0.09
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.67
Consensus pattern (19 bp):
TTTATTGTATGTTAATTTA
Found at i:8604564 original size:14 final size:15
Alignment explanation
Indices: 8604547--8604578 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
8604537 TTAATTGATT
8604547 TTATTTTTTTCAT-A
1 TTATTTTTTTCATGA
8604561 TTATTTTTTTCATGA
1 TTATTTTTTTCATGA
8604576 TTA
1 TTA
8604579 AATTTAGGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.22, C:0.06, G:0.03, T:0.69
Consensus pattern (15 bp):
TTATTTTTTTCATGA
Found at i:8609980 original size:57 final size:57
Alignment explanation
Indices: 8609881--8610039 Score: 171
Period size: 57 Copynumber: 2.8 Consensus size: 57
8609871 TGTTTTTGTA
** ***
8609881 CAAGGAAAATTGATACTTTCAATTTTTC-CCCAAAATATTTTTTAG-AAACTTTAATTTT
1 CAAGGAAAATTGATACTTTCAACCTTTCATTAAAAATATTTTTTAGAAAAC-TT--TTTT
* * * *
8609939 GAA-GAAAATTTATATTTTCAACCTTTCCTTAAAAATATTTTTTAGAAAACTTTTTT
1 CAAGGAAAATTGATACTTTCAACCTTTCATTAAAAATATTTTTTAGAAAACTTTTTT
*
8609995 CAAGGAAAATTGATACTTTCAACTTTTCATTAAAAATATATTTTT
1 CAAGGAAAATTGATACTTTCAACCTTTCATTAAAAATAT-TTTTT
8610040 TAAAATTTAT
Statistics
Matches: 84, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
56 6 0.07
57 51 0.61
58 23 0.27
59 4 0.05
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.44
Consensus pattern (57 bp):
CAAGGAAAATTGATACTTTCAACCTTTCATTAAAAATATTTTTTAGAAAACTTTTTT
Found at i:8610149 original size:12 final size:12
Alignment explanation
Indices: 8610097--8610150 Score: 51
Period size: 11 Copynumber: 4.7 Consensus size: 12
8610087 AATTAAAGGG
**
8610097 AAAAAATAAAGG
1 AAAAAATAAAAT
8610109 AAAAAA-AGAAAT
1 AAAAAATA-AAAT
8610121 -AAAAATAAAA-
1 AAAAAATAAAAT
*
8610131 ATAAAATAAAAT
1 AAAAAATAAAAT
8610143 AAAAAATA
1 AAAAAATA
8610151 CTAAACAATT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
11 18 0.53
12 16 0.47
ACGTcount: A:0.81, C:0.00, G:0.06, T:0.13
Consensus pattern (12 bp):
AAAAAATAAAAT
Found at i:8610150 original size:17 final size:16
Alignment explanation
Indices: 8610097--8610148 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
8610087 AATTAAAGGG
**
8610097 AAAAAATAAAGGAAAA
1 AAAAAATAAAATAAAA
8610113 AAAGAAATAAAAATAAAA
1 AAA-AAAT-AAAATAAAA
*
8610131 ATAAAATAAAATAAAA
1 AAAAAATAAAATAAAA
8610147 AA
1 AA
8610149 TACTAAACAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
16 13 0.43
17 8 0.27
18 9 0.30
ACGTcount: A:0.83, C:0.00, G:0.06, T:0.12
Consensus pattern (16 bp):
AAAAAATAAAATAAAA
Found at i:8610179 original size:7 final size:7
Alignment explanation
Indices: 8610167--8610207 Score: 59
Period size: 7 Copynumber: 6.0 Consensus size: 7
8610157 AATTCTAATC
8610167 TAATAAA
1 TAATAAA
8610174 TAAT-AA
1 TAATAAA
8610180 TAAT-AA
1 TAATAAA
8610186 TAATAAA
1 TAATAAA
8610193 TAATAAA
1 TAATAAA
8610200 TAAATAAA
1 T-AATAAA
8610208 AACTTGGGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
6 12 0.38
7 14 0.44
8 6 0.19
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
TAATAAA
Found at i:8610611 original size:30 final size:31
Alignment explanation
Indices: 8610577--8610636 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
8610567 GGTAGTTGGT
8610577 CGAAAAATTCAAACTTGGCC-AAAAATTCAC
1 CGAAAAATTCAAACTTGGCCAAAAAATTCAC
* **
8610607 CGAAAATTTTGAACTTGGCCAAAAAATTCA
1 CGAAAAATTCAAACTTGGCCAAAAAATTCA
8610637 ACCAAAATCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 17 0.65
31 9 0.35
ACGTcount: A:0.45, C:0.20, G:0.12, T:0.23
Consensus pattern (31 bp):
CGAAAAATTCAAACTTGGCCAAAAAATTCAC
Found at i:8610994 original size:21 final size:20
Alignment explanation
Indices: 8610949--8611042 Score: 59
Period size: 21 Copynumber: 4.5 Consensus size: 20
8610939 TCTCAGTCGA
** *
8610949 ATAAAAAAAAAATAAAATCAA
1 ATAAAAAAAAAATTTAAT-AG
8610970 ATAAAAAAAAAATGTTAATAG
1 ATAAAAAAAAAAT-TTAATAG
*
8610991 ATAATTAAAGAAAA--TAATTAG
1 ATAA--AAAAAAAATTTAA-TAG
*
8611012 AT-AAATAAAAATATTAATAG
1 ATAAAAAAAAAAT-TTAATAG
8611032 ATAAATAAAAA
1 ATAAA-AAAAA
8611043 TAATAACAGA
Statistics
Matches: 57, Mismatches: 7, Indels: 17
0.70 0.09 0.21
Matches are distributed among these distances:
18 6 0.11
20 9 0.16
21 28 0.49
22 7 0.12
23 7 0.12
ACGTcount: A:0.70, C:0.01, G:0.05, T:0.23
Consensus pattern (20 bp):
ATAAAAAAAAAATTTAATAG
Found at i:8611022 original size:42 final size:41
Alignment explanation
Indices: 8610970--8611112 Score: 146
Period size: 41 Copynumber: 3.4 Consensus size: 41
8610960 ATAAAATCAA
* * *
8610970 ATAAAAAAAAAATGTTAATAGATAATTAAAGAAAATAATTAG
1 ATAAATAAAAAATATTAATAGATAAATAAA-AAAATAATTAG
*
8611012 ATAAAT-AAAAATATTAATAGATAAATAAAAATAATAA-CAG
1 ATAAATAAAAAATATTAATAGATAAATAAAAA-AATAATTAG
* *
8611052 ATAAATAATAATATATAAATAGATAAATAATAATAAATACATATAG
1 ATAAATAA-AAAATATTAATAGATAAATAA-AA-AAATA-AT-TAG
*
8611098 ATAAATAATAAATAT
1 ATAAATAAAAAATAT
8611113 ATATTAACAA
Statistics
Matches: 84, Mismatches: 9, Indels: 13
0.79 0.08 0.12
Matches are distributed among these distances:
40 10 0.12
41 27 0.32
42 24 0.29
43 6 0.07
44 2 0.02
45 5 0.06
46 10 0.12
ACGTcount: A:0.65, C:0.01, G:0.06, T:0.28
Consensus pattern (41 bp):
ATAAATAAAAAATATTAATAGATAAATAAAAAAATAATTAG
Found at i:8611034 original size:20 final size:20
Alignment explanation
Indices: 8610977--8611086 Score: 114
Period size: 20 Copynumber: 5.3 Consensus size: 20
8610967 CAAATAAAAA
* *
8610977 AAAAATGTTAATAGATAATT
1 AAAAATATTAATAGATAAAT
*
8610997 AAAGAA-AATAATTAGATAAAT
1 AAA-AATATTAA-TAGATAAAT
8611018 AAAAATATTAATAGATAAAT
1 AAAAATATTAATAGATAAAT
* *
8611038 AAAAATAATAACAGATAAAT
1 AAAAATATTAATAGATAAAT
*
8611058 AATAATATATAAATAGATAAAT
1 AA-AA-ATATTAATAGATAAAT
*
8611080 AATAATA
1 AAAAATA
8611087 AATACATATA
Statistics
Matches: 75, Mismatches: 10, Indels: 10
0.79 0.11 0.11
Matches are distributed among these distances:
20 40 0.53
21 20 0.27
22 15 0.20
ACGTcount: A:0.65, C:0.01, G:0.06, T:0.28
Consensus pattern (20 bp):
AAAAATATTAATAGATAAAT
Found at i:8611039 original size:4 final size:4
Alignment explanation
Indices: 8611002--8611240 Score: 119
Period size: 4 Copynumber: 59.8 Consensus size: 4
8610992 TAATTAAAGA
* * * * * *
8611002 AAAT AATT AGAT AAAT AAA- AATAT TAAT AGAT AAAT AAAA ATAAT -AAC
1 AAAT AAAT AAAT AAAT AAAT AA-AT AAAT AAAT AAAT AAAT A-AAT AAAT
* * *
8611050 AGAT AAAT -AAT -AAT ATAT AAAT AGAT AAAT -AAT -AAT AAAT ACATAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A-A-AT
* * * *
8611096 AGAT AAAT -AAT AAAT ATATAT TAAC AAAT AAAT -AAT AAAA AAAT AAAAT
1 AAAT AAAT AAAT AAAT A-A-AT AAAT AAAT AAAT AAAT AAAT AAAT -AAAT
* *
8611145 AAAT ATATAT TAAT AAAT AGTAAT -AAT AAAT AAAT AAAT ACAT AAGAT
1 AAAT A-A-AT AAAT AAAT A--AAT AAAT AAAT AAAT AAAT AAAT AA-AT
8611193 ACAA- ACAAT AAAT AAAT AAAT AAAT -AA- AAAT AAA- AAAT AAA- AAAT
1 A-AAT A-AAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
8611238 AAA
1 AAA
8611241 ATGGGCCTAC
Statistics
Matches: 180, Mismatches: 30, Indels: 50
0.69 0.12 0.19
Matches are distributed among these distances:
3 35 0.19
4 117 0.65
5 17 0.09
6 11 0.06
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (4 bp):
AAAT
Found at i:8611044 original size:14 final size:13
Alignment explanation
Indices: 8611014--8611235 Score: 103
Period size: 14 Copynumber: 16.2 Consensus size: 13
8611004 ATAATTAGAT
*
8611014 AAATAA-AAATAT
1 AAATAATAAATAA
*
8611026 TAATAGATAAATAA
1 AAATA-ATAAATAA
* *
8611040 AAATAATAACAGAT
1 AAATAATAA-ATAA
*
8611054 AAATAATAATATAT
1 AAATAATAA-ATAA
8611068 AAATAGATAAATAA
1 AAATA-ATAAATAA
*
8611082 TAATAAATACATATAGA
1 AAAT-AATA-A-ATA-A
8611099 TAAATAATAAATATA
1 -AAATAATAAATA-A
* * *
8611114 TATTAACAAAT--
1 AAATAATAAATAA
8611125 AAATAATAAA-AA
1 AAATAATAAATAA
*
8611137 AATAAAATAAATATA
1 AA-ATAATAAATA-A
* * *
8611152 TATTAATAAATAG
1 AAATAATAAATAA
*
8611165 TAATAATAAATAAA
1 AAATAATAAAT-AA
*
8611179 TAAATACATAAGATAC
1 -AAATA-ATAA-ATAA
*
8611195 AAACAATAAATAA
1 AAATAATAAATAA
*
8611208 ATA-AATAAATAA
1 AAATAATAAATAA
*
8611220 AAATAAAAAATAA
1 AAATAATAAATAA
8611233 AAA
1 AAA
8611236 ATAAAATGGG
Statistics
Matches: 160, Mismatches: 31, Indels: 37
0.70 0.14 0.16
Matches are distributed among these distances:
11 7 0.04
12 17 0.11
13 38 0.24
14 59 0.37
15 20 0.12
16 9 0.06
17 7 0.04
18 3 0.02
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (13 bp):
AAATAATAAATAA
Found at i:8611124 original size:21 final size:21
Alignment explanation
Indices: 8611080--8611126 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
8611070 ATAGATAAAT
*
8611080 AATAATAAATACATATAGATA
1 AATAATAAATACATATAGACA
*
8611101 AATAATAAATATATATTA-ACA
1 AATAATAAATACATA-TAGACA
8611122 AATAA
1 AATAA
8611127 ATAATAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 21 0.91
22 2 0.09
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (21 bp):
AATAATAAATACATATAGACA
Found at i:8611150 original size:38 final size:38
Alignment explanation
Indices: 8611034--8611226 Score: 143
Period size: 38 Copynumber: 5.2 Consensus size: 38
8611024 ATTAATAGAT
* * *
8611034 AAATAAA-A-ATAATAACAGATAAATAAT-AATATAT-
1 AAATAAATATATATTAACAAATAAATAATAAATAAATA
* * * * * *
8611068 AAATAGATAAATAATAATAAATACAT-ATAGATAAAT-
1 AAATAAATATATATTAACAAATAAATAATAAATAAATA
*
8611104 -AATAAATATATATTAACAAATAAATAATAAAAAAATA
1 AAATAAATATATATTAACAAATAAATAATAAATAAATA
*
8611141 AAATAAATATATATTAATAAATAGTAATAATAAATAAAT-
1 AAATAAATATATATTAACAAATA--AATAATAAATAAATA
* * **
8611180 AAATACATAAGATACAAAC-AATAAATAAATAAATAAATAA
1 AAATAAAT-ATATATTAACAAATAAAT-AATAAATAAAT-A
8611220 AAATAAA
1 AAATAAA
8611227 AAATAAAAAA
Statistics
Matches: 126, Mismatches: 21, Indels: 18
0.76 0.13 0.11
Matches are distributed among these distances:
34 6 0.05
35 23 0.18
36 26 0.21
37 3 0.02
38 32 0.25
39 11 0.09
40 25 0.20
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (38 bp):
AAATAAATATATATTAACAAATAAATAATAAATAAATA
Found at i:8611184 original size:59 final size:60
Alignment explanation
Indices: 8611076--8611189 Score: 135
Period size: 59 Copynumber: 1.9 Consensus size: 60
8611066 ATAAATAGAT
* *
8611076 AAATAATAATAAATACATATAGATAAATAATAAATATATATTAACAAATAAATAATAAAA
1 AAATAATAATAAATACATATAGATAAATAATAAATATAAATAAACAAATAAATAATAAAA
* * * *
8611136 AAATAA-AATAAATATATATTA-ATAAATAGT-AATAATAAATAAATAAATACATAA
1 AAATAATAATAAATACATA-TAGATAAATAATAAAT-ATAAATAAACAAATAAATAA
8611190 GATACAAACA
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
58 3 0.07
59 35 0.76
60 8 0.17
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.29
Consensus pattern (60 bp):
AAATAATAATAAATACATATAGATAAATAATAAATATAAATAAACAAATAAATAATAAAA
Found at i:8611205 original size:30 final size:29
Alignment explanation
Indices: 8611027--8611240 Score: 118
Period size: 31 Copynumber: 7.2 Consensus size: 29
8611017 TAAAAATATT
* * * *
8611027 AATAGATAAATAAAAAT-AATAACAGATA
1 AATAAATAAATAAAAATAAAAAATAAATA
* *
8611055 AAT-AATAATATATAAATAGATAAAT-AAT-
1 AATAAATAA-ATAAAAATA-AAAAATAAATA
* * * *
8611083 AATAAATACATATAGATAAATAATAAATA
1 AATAAATAAATAAAAATAAAAAATAAATA
* *
8611112 TATATTAACAAATAAATAATAAAAAAATAAAATA
1 -A-ATAAATAAATAAA-AAT-AAAAAAT-AAATA
* * *
8611146 AATATAT-ATTAATAAATAGTAATAATAAATA
1 AATAAATAAATAA-AAATA--AAAAATAAATA
* *
8611177 AATAAATACAT-AAGATACAAACAATAAATA
1 AATAAATAAATAAAAATA-AAA-AATAAATA
8611207 AATAAATAAATAAAAATAAAAAATAAA-A
1 AATAAATAAATAAAAATAAAAAATAAATA
8611235 AATAAA
1 AATAAA
8611241 ATGGGCCTAC
Statistics
Matches: 140, Mismatches: 29, Indels: 34
0.69 0.14 0.17
Matches are distributed among these distances:
27 8 0.06
28 31 0.22
29 14 0.10
30 30 0.21
31 33 0.24
32 12 0.09
33 7 0.05
34 5 0.04
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.26
Consensus pattern (29 bp):
AATAAATAAATAAAAATAAAAAATAAATA
Found at i:8611225 original size:6 final size:7
Alignment explanation
Indices: 8611166--8611241 Score: 64
Period size: 7 Copynumber: 10.0 Consensus size: 7
8611156 AATAAATAGT
*
8611166 AATAATA
1 AATAAAA
8611173 AATAAATA
1 AATAAA-A
8611181 AATACATAA
1 AATA-A-AA
*
8611190 GATACAAA
1 AATA-AAA
8611198 CAATAAATA
1 -AATAAA-A
8611207 AATAAATA
1 AATAAA-A
8611215 AAT-AAA
1 AATAAAA
8611221 AATAAAA
1 AATAAAA
8611228 AATAAAA
1 AATAAAA
8611235 AATAAAA
1 AATAAAA
8611242 TGGGCCTACC
Statistics
Matches: 60, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
6 4 0.07
7 24 0.40
8 20 0.33
9 11 0.18
10 1 0.02
ACGTcount: A:0.75, C:0.04, G:0.01, T:0.20
Consensus pattern (7 bp):
AATAAAA
Found at i:8611232 original size:21 final size:21
Alignment explanation
Indices: 8610951--8611241 Score: 94
Period size: 20 Copynumber: 13.1 Consensus size: 21
8610941 TCAGTCGAAT
8610951 AAAA-AAAAAATAAAATCAAATA
1 AAAATAAAAAAT-AAAT-AAATA
* * *
8610973 AAAA-AAAAATGTTAATAGATA
1 AAAATAAAAA-ATAAATAAATA
* *
8610994 ATTAAAGAAAATAATTAGATAAATA
1 A--AAATAAAA-AA-TAAATAAATA
** *
8611019 AAAAT-ATTAATAGATAAATA
1 AAAATAAAAAATAAATAAATA
* * *
8611039 AAAAT-AATAACAGATAAATA
1 AAAATAAAAAATAAATAAATA
* * *
8611059 ATAATATATAAATAGATAAATA
1 AAAATA-AAAAATAAATAAATA
* *
8611081 ATAATAAATACATATAGATAAATA
1 AAAATAAA-A-A-ATAAATAAATA
* * * *
8611105 ATAAAT-ATATATTAACAAATA
1 A-AAATAAAAAATAAATAAATA
*
8611126 AATAATAAAAAA-ATA-AAATA
1 AA-AATAAAAAATAAATAAATA
* **
8611146 AATATATATTAATAAATAGTAATA
1 AAAATA-AAAAATAAATA--AATA
*
8611170 ATAAATAAATAAATACATAAGATACA
1 A-AAATAAA-AAATAAATAA-AT--A
8611196 AACAATAAATAAATAAATAAATA
1 AA-AATAAA-AAATAAATAAATA
8611219 AAAATAAAAAATAAA-AAATA
1 AAAATAAAAAATAAATAAATA
8611239 AAA
1 AAA
8611242 TGGGCCTACC
Statistics
Matches: 208, Mismatches: 36, Indels: 52
0.70 0.12 0.18
Matches are distributed among these distances:
19 3 0.01
20 51 0.25
21 30 0.14
22 42 0.20
23 13 0.06
24 25 0.12
25 26 0.12
26 18 0.09
ACGTcount: A:0.69, C:0.02, G:0.03, T:0.25
Consensus pattern (21 bp):
AAAATAAAAAATAAATAAATA
Found at i:8611517 original size:42 final size:42
Alignment explanation
Indices: 8611420--8611651 Score: 315
Period size: 42 Copynumber: 5.5 Consensus size: 42
8611410 AATTCTGATC
* *
8611420 AAAGCTCCTCTAAGCAGAGGCTCAACGACTTTGAAAACATAAAC
1 AAAGCTCCTCTAATCAGAGGCTCAACGACTTTG-AAA-ATAAAT
*
8611464 AAAGCTCCTCTAATCAGAGGCTCAACGATTTTGAAAATAAAT
1 AAAGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAATAAAT
* *
8611506 AAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAATATAAAT
1 AAAGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAATAAAT
*
8611548 GAAGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAATAAAT
1 AAAGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAATAAAT
* * * *
8611590 --GGCTCCTCTAATCAGAGGCTCAACAACTTTGGAAGACAAAT
1 AAAGCTCCTCTAATCAGAGGCTCAACGACTTT-GAAAATAAAT
* *
8611631 AAAGCTCTTCTAAACAGAGGC
1 AAAGCTCCTCTAATCAGAGGC
8611652 GTTATAACTT
Statistics
Matches: 169, Mismatches: 16, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
40 28 0.17
41 8 0.05
42 83 0.49
43 19 0.11
44 31 0.18
ACGTcount: A:0.39, C:0.22, G:0.16, T:0.22
Consensus pattern (42 bp):
AAAGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAATAAAT
Found at i:8611676 original size:82 final size:80
Alignment explanation
Indices: 8611423--8611676 Score: 251
Period size: 82 Copynumber: 3.0 Consensus size: 80
8611413 TCTGATCAAA
* *
8611423 GCTCCTCTAAGCAGAGGCTCAACGACTTTGAAAACATAAACAAAGCTCCTCTAATCAGAGGCTCA
1 GCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAC--AAATAAAGCTCCTCTAATCAGAGGCTCA
*
8611488 ACGATTTTGAAAATAAATAAA-
64 AC-A-CTT-AAAA-AAA-AAAG
* * *
8611509 GCTCCTCTAAACAGAGGCTCAACGACTTTGAATATAAATGAAGCTCCTCTAATCAGAGGCTCAAC
1 GCTCCTCTAAACAGAGGCTCAACGACTTTGAAAACAAATAAAGCTCCTCTAATCAGAGGCTCAAC
* * *
8611574 GACTTTGAAAATAAATG
66 -AC-TTAAAAAAAAAAG
* * * * * *
8611591 GCTCCTCTAATCAGAGGCTCAACAACTTTGGAAGACAAATAAAGCTCTTCTAAACAGAGGCGTTA
1 GCTCCTCTAAACAGAGGCTCAACGACTTT-GAAAACAAATAAAGCTCCTCTAATCAGAGGC-TCA
8611656 TA-ACTTAAAAAAAAAAG
64 -ACACTTAAAAAAAAAAG
8611673 GCTC
1 GCTC
8611677 ATTGACAATC
Statistics
Matches: 143, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
81 2 0.01
82 43 0.30
83 31 0.22
84 34 0.24
85 1 0.01
86 32 0.22
ACGTcount: A:0.39, C:0.22, G:0.16, T:0.23
Consensus pattern (80 bp):
GCTCCTCTAAACAGAGGCTCAACGACTTTGAAAACAAATAAAGCTCCTCTAATCAGAGGCTCAAC
ACTTAAAAAAAAAAG
Found at i:8612717 original size:17 final size:16
Alignment explanation
Indices: 8612685--8612715 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
8612675 TCATTCACTT
8612685 TTTTTCATTTTTTTTC
1 TTTTTCATTTTTTTTC
8612701 TTTTTCATTTTTTTT
1 TTTTTCATTTTTTTT
8612716 TCAAGCATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.10, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTTCATTTTTTTTC
Found at i:8624349 original size:58 final size:57
Alignment explanation
Indices: 8624207--8624538 Score: 449
Period size: 57 Copynumber: 5.8 Consensus size: 57
8624197 TGCTTTTGTG
* * *
8624207 CAAGGAAAATTAATACTTTCAACTTTT-TCCCAAAATATTTTTTAG-AAACTTTAATTT
1 CAAGGAAAATTGATACTTTCAACTTTTCT-CAAAAATATTTTTTAGAAAAC-TTATTTT
* **
8624264 CGAA-GAAAATTGATATTTTCAACTTTTCTTTGAAAATA-TTTTTAGAAAACTTATTTT
1 C-AAGGAAAATTGATACTTTCAACTTTTC-TCAAAAATATTTTTTAGAAAACTTATTTT
* *
8624321 CAAGGAAAATTGATACTTTCAACTTTTTCTCAAAACTATTTTTTAGAAAA-ATATTTT
1 CAAGGAAAATTGATACTTTCAAC-TTTTCTCAAAAATATTTTTTAGAAAACTTATTTT
*
8624378 CAAGGAAAATTGATACTTTCAACTTTTCTTCAAAAATATTTTTTAGAAAACTTATTCT
1 CAAGGAAAATTGATACTTTCAACTTTTC-TCAAAAATATTTTTTAGAAAACTTATTTT
8624436 CAAGGAAAATTGATACTTTCAACTTTTTCTCAAAAATATTATTTTAGAAAACTTATTTT
1 CAAGGAAAATTGATACTTTCAAC-TTTTCTCAAAAATATT-TTTTAGAAAACTTATTTT
* *
8624495 CAAGAAAAATTGATACTTTCAACTTTTCATTAAAAATATTTTTT
1 CAAGGAAAATTGATACTTTCAACTTTTC-TCAAAAATATTTTTT
8624539 TTGAAATTTA
Statistics
Matches: 247, Mismatches: 16, Indels: 23
0.86 0.06 0.08
Matches are distributed among these distances:
56 7 0.03
57 109 0.44
58 76 0.31
59 55 0.22
ACGTcount: A:0.39, C:0.12, G:0.07, T:0.43
Consensus pattern (57 bp):
CAAGGAAAATTGATACTTTCAACTTTTCTCAAAAATATTTTTTAGAAAACTTATTTT
Found at i:8624589 original size:16 final size:15
Alignment explanation
Indices: 8624561--8624618 Score: 62
Period size: 16 Copynumber: 3.7 Consensus size: 15
8624551 TAAAGAAAAT
*
8624561 AATAACAAAAAATAA
1 AATAAAAAAAAATAA
8624576 AATAAAATAAAAATAA
1 AATAAAA-AAAAATAA
**
8624592 AGGAAAAAAGAAATAAA
1 AATAAAAAA-AAAT-AA
8624609 AATAAAAAAA
1 AATAAAAAAA
8624619 TACTAAACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
15 8 0.23
16 18 0.51
17 9 0.26
ACGTcount: A:0.81, C:0.02, G:0.05, T:0.12
Consensus pattern (15 bp):
AATAAAAAAAAATAA
Found at i:8624650 original size:3 final size:3
Alignment explanation
Indices: 8624637--8624670 Score: 59
Period size: 3 Copynumber: 11.0 Consensus size: 3
8624627 AATTCTAATC
8624637 TAA TAAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8624671 ATAAATAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:8625148 original size:18 final size:19
Alignment explanation
Indices: 8625105--8625154 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
8625095 GGTAGCTGGT
*
8625105 CGAAAAATTCAAACTTGGC
1 CGAAAAATTCAAACTTGAC
* *
8625124 TGAAAAATTCGAACTTGAC
1 CGAAAAATTCAAACTTGAC
8625143 CGAAAAATTCAA
1 CGAAAAATTCAA
8625155 TCGAAATCTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.46, C:0.18, G:0.14, T:0.22
Consensus pattern (19 bp):
CGAAAAATTCAAACTTGAC
Found at i:8625541 original size:42 final size:42
Alignment explanation
Indices: 8625497--8625711 Score: 172
Period size: 42 Copynumber: 5.0 Consensus size: 42
8625487 TAAAATAAAA
* * *
8625497 AAATGTTAATAGATAATTAAAAGAAAATAATTAGATAAATAA-
1 AAATATTAATAGATAAATAAAA-ATAATAATTAGATAAATAAT
*
8625539 AAATATTAATAGATAAATAAAAATAATAA-CAGATAAATAAT
1 AAATATTAATAGATAAATAAAAATAATAATTAGATAAATAAT
* *
8625580 AATATATAAATAGATAAATAATAATAATACATATAGATAAATAAT
1 AA-ATATTAATAGATAAATAAAAATAATA-AT-TAGATAAATAAT
* * * *
8625625 AAATATATATTA-ATAAATAAATAATAAAAAATA-A-AATAAAAT
1 AAATAT-TAATAGATAAATAAA-AATAATAATTAGATAA-ATAAT
* ** * *
8625667 AAATATATATTA-ATAAATAGTAATAATAAATAAATAAATACAT
1 AAATAT-TAATAGATAAATAAAAATAATAATTAGATAAATA-AT
8625710 AA
1 AA
8625712 GATGCAAACA
Statistics
Matches: 145, Mismatches: 17, Indels: 21
0.79 0.09 0.11
Matches are distributed among these distances:
40 10 0.07
41 20 0.14
42 71 0.49
43 9 0.06
44 13 0.09
45 22 0.15
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.29
Consensus pattern (42 bp):
AAATATTAATAGATAAATAAAAATAATAATTAGATAAATAAT
Found at i:8625558 original size:4 final size:4
Alignment explanation
Indices: 8625521--8625786 Score: 121
Period size: 4 Copynumber: 65.8 Consensus size: 4
8625511 AATTAAAAGA
* * * * * *
8625521 AAAT AATT AGAT AAAT AAA- AATAT TAAT AGAT AAAT AAAA ATAAT -AAC
1 AAAT AAAT AAAT AAAT AAAT AA-AT AAAT AAAT AAAT AAAT A-AAT AAAT
* * *
8625569 AGAT AAAT -AAT -AAT ATAT AAAT AGAT AAAT -AAT -AAT -AAT ACATAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A-A-AT
* *
8625614 AGAT AAAT -AAT AAAT ATATAT TAAT AAAT AAAT -AAT AAA- AAAT AAAAT
1 AAAT AAAT AAAT AAAT A-A-AT AAAT AAAT AAAT AAAT AAAT AAAT -AAAT
* *
8625662 AAAAT AAAT ATATAT TAAT AAAT AGTAAT -AAT AAAT AAAT AAAT ACAT
1 -AAAT AAAT A-A-AT AAAT AAAT A--AAT AAAT AAAT AAAT AAAT AAAT
* *
8625710 AAGAT GCAAA- CAA- AAAT AAAT AAAT AAAT AAAT AAAT ACAT AAGAT
1 AA-AT --AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA-AT
*
8625756 GCAAA- CAA- AAAT AAAT AAAT AAAT AAAT AAA
1 --AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
8625787 AATATAAAAT
Statistics
Matches: 203, Mismatches: 32, Indels: 54
0.70 0.11 0.19
Matches are distributed among these distances:
3 39 0.19
4 127 0.63
5 21 0.10
6 12 0.06
7 4 0.02
ACGTcount: A:0.67, C:0.03, G:0.04, T:0.26
Consensus pattern (4 bp):
AAAT
Found at i:8625563 original size:14 final size:13
Alignment explanation
Indices: 8625533--8625805 Score: 108
Period size: 14 Copynumber: 19.5 Consensus size: 13
8625523 ATAATTAGAT
*
8625533 AAATAA-AAATAT
1 AAATAATAAATAA
*
8625545 TAATAGATAAATAA
1 AAATA-ATAAATAA
* *
8625559 AAATAATAACAGAT
1 AAATAATAA-ATAA
*
8625573 AAATAATAATATAT
1 AAATAATAA-ATAA
8625587 AAATAGATAAATAA
1 AAATA-ATAAATAA
*
8625601 TAATAATACATATAGA
1 AAATAATA-A-ATA-A
8625617 TAAATAATAAATATA
1 -AAATAATAAATA-A
* *
8625632 TATTAATAAATAA
1 AAATAATAAATAA
*
8625645 ATAATAAAAAATAA
1 A-AATAATAAATAA
*
8625659 AATAAAATAAATATA
1 AA-ATAATAAATA-A
* * *
8625674 TATTAATAAATAG
1 AAATAATAAATAA
*
8625687 TAATAATAAATAAA
1 AAATAATAAAT-AA
8625701 TAAATACATAAGATGCAA
1 -AAATA-ATAA-AT--AA
*
8625719 ACAAAAATAAATAA
1 A-AATAATAAATAA
*
8625733 ATA-AATAAAT--
1 AAATAATAAATAA
8625743 AAATACATAAGATGCAA
1 AAATA-ATAA-AT--AA
*
8625760 ACAAAAATAAATAA
1 A-AATAATAAATAA
*
8625774 ATA-AATAAATAA
1 AAATAATAAATAA
8625786 AAAT-ATAAAATATA
1 AAATAAT-AAATA-A
8625800 AAATAA
1 AAATAA
8625806 AATGGGCATA
Statistics
Matches: 200, Mismatches: 32, Indels: 55
0.70 0.11 0.19
Matches are distributed among these distances:
10 2 0.01
11 1 0.00
12 28 0.14
13 29 0.14
14 85 0.43
15 18 0.09
16 10 0.05
17 19 0.09
18 8 0.04
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (13 bp):
AAATAATAAATAA
Found at i:8625573 original size:62 final size:66
Alignment explanation
Indices: 8625507--8625659 Score: 154
Period size: 62 Copynumber: 2.3 Consensus size: 66
8625497 AAATGTTAAT
* * *
8625507 AGATAATTAA-AAGAAAATAATTAGATAAATAAAAAT-AT-TA-ATAGATAAATAA-AAATAATA
1 AGATAAATAATAA-AAAATAAATAGATAAATAAAAATAATACATATAGATAAATAATAAATAATA
8625567 AC
65 AC
* * *
8625569 AGATAAATAATAATATATAAATAGATAAATAATAATAATACATATAGATAAATAATAAATATATA
1 AGATAAATAATAAAAAATAAATAGATAAATAAAAATAATACATATAGATAAATAAT-AA-ATA-A
*
8625634 TTAAT
63 -TAAC
*
8625639 AAATAAATAATAAAAAATAAA
1 AGATAAATAATAAAAAATAAA
8625660 ATAAAATAAA
Statistics
Matches: 72, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
62 28 0.39
63 4 0.06
64 1 0.01
65 12 0.17
67 2 0.03
68 3 0.04
69 1 0.01
70 21 0.29
ACGTcount: A:0.66, C:0.01, G:0.05, T:0.28
Consensus pattern (66 bp):
AGATAAATAATAAAAAATAAATAGATAAATAAAAATAATACATATAGATAAATAATAAATAATAA
C
Found at i:8625683 original size:63 final size:60
Alignment explanation
Indices: 8625559--8625711 Score: 147
Period size: 63 Copynumber: 2.5 Consensus size: 60
8625549 AGATAAATAA
* * *
8625559 AAATAATAACAGATAAAT-AAT-AATATATAAATAGAT-AAATAATAATAATACATATAGAT
1 AAATAATAATA-ATAAATAAATAAATACATAAA-AAATAAAATAATAATAATACATATAGAT
*
8625618 AAATAATAAATATATATTAATAAATAAATA-ATAAAAAATAAAATAA-AATAAATATATATTA-A
1 AAATAAT-AATA-ATA--AATAAATAAATACATAAAAAATAAAATAATAAT-AATACATA-TAGA
8625680 T
60 T
*
8625681 AAATAGTAATAATAAATAAATAAATACATAA
1 AAATAATAATAATAAATAAATAAATACATAA
8625712 GATGCAAACA
Statistics
Matches: 80, Mismatches: 5, Indels: 17
0.78 0.05 0.17
Matches are distributed among these distances:
59 19 0.24
60 10 0.12
61 3 0.04
62 13 0.16
63 29 0.36
64 6 0.08
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (60 bp):
AAATAATAATAATAAATAAATAAATACATAAAAAATAAAATAATAATAATACATATAGAT
Found at i:8625736 original size:41 final size:41
Alignment explanation
Indices: 8625691--8625786 Score: 192
Period size: 41 Copynumber: 2.3 Consensus size: 41
8625681 AAATAGTAAT
8625691 AATAAATAAATAAATACATAAGATGCAAACAAAAATAAATA
1 AATAAATAAATAAATACATAAGATGCAAACAAAAATAAATA
8625732 AATAAATAAATAAATACATAAGATGCAAACAAAAATAAATA
1 AATAAATAAATAAATACATAAGATGCAAACAAAAATAAATA
8625773 AATAAATAAATAAA
1 AATAAATAAATAAA
8625787 AATATAAAAT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 55 1.00
ACGTcount: A:0.70, C:0.06, G:0.04, T:0.20
Consensus pattern (41 bp):
AATAAATAAATAAATACATAAGATGCAAACAAAAATAAATA
Found at i:8625808 original size:41 final size:42
Alignment explanation
Indices: 8625521--8625808 Score: 151
Period size: 41 Copynumber: 7.0 Consensus size: 42
8625511 AATTAAAAGA
* * * *
8625521 AAATAATTAGATAAATAAAAATAT-TAATAGATAAATAAAA-
1 AAATAAATAAATAAATAAAAATATAAAATACATAAATAAAAT
* * * *
8625561 ATAAT-AACAGATAAATAATAATATATAAATAGATAAATAATAAT
1 A-AATAAATAAATAAATAAAAATATA-AAATACATAAATAA-AAT
* * *
8625605 -AATACATATAGATAAATAATAAATATATATTA-ATAAAT-AAAT
1 AAATA-A-ATAAATAAATAA-AAATATAAAATACATAAATAAAAT
* * *
8625647 -AATAAA-AAATAAA-ATAAAATA-AATATATATTAAT-AAAT
1 AAATAAATAAATAAATA-AAAATATAAAATACATAAATAAAAT
* * * *
8625685 AGTAAT-AATAAATAAATAAATACATAAGATGCA-AACA-AAAAT
1 A--AATAAATAAATAAATAAAAATATAAAATACATAA-ATAAAAT
* * * *
8625727 AAATAAATAAATAAATAAATACATAAGATGCA-AACA-AAAAT
1 AAATAAATAAATAAATAAAAATATAAAATACATAA-ATAAAAT
*
8625768 AAATAAATAAATAAATAAAAATATAAAATATA-AAATAAAAT
1 AAATAAATAAATAAATAAAAATATAAAATACATAAATAAAAT
8625809 GGGCATACCT
Statistics
Matches: 203, Mismatches: 24, Indels: 41
0.76 0.09 0.15
Matches are distributed among these distances:
37 3 0.01
38 15 0.07
39 7 0.03
40 24 0.12
41 89 0.44
42 35 0.17
43 3 0.01
44 7 0.03
45 14 0.07
46 6 0.03
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.26
Consensus pattern (42 bp):
AAATAAATAAATAAATAAAAATATAAAATACATAAATAAAAT
Found at i:8626134 original size:24 final size:23
Alignment explanation
Indices: 8626102--8626147 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
8626092 TACATGAATT
8626102 TAATAAAAATACTTCATTTATATA
1 TAATAAAAATA-TTCATTTATATA
* *
8626126 TAATTAAAATATTTATTTATAT
1 TAATAAAAATATTCATTTATAT
8626148 TTAAAAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (23 bp):
TAATAAAAATATTCATTTATATA
Found at i:8626141 original size:19 final size:19
Alignment explanation
Indices: 8626117--8626153 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8626107 AAAATACTTC
8626117 ATTTATATATAATTAAAAT
1 ATTTATATATAATTAAAAT
* *
8626136 ATTTATTTATATTTAAAA
1 ATTTATATATAATTAAAA
8626154 ATTATATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
ATTTATATATAATTAAAAT
Found at i:8626161 original size:19 final size:19
Alignment explanation
Indices: 8626124--8626176 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
8626114 TTCATTTATA
*
8626124 TATAATTAAAATATT-TATT
1 TATATTTAAAA-ATTATATT
8626143 TATATTTAAAAATTATATT
1 TATATTTAAAAATTATATT
*
8626162 T-T-TATAAAAATTATA
1 TATATTTAAAAATTATA
8626177 CTAAATTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 12 0.39
18 4 0.13
19 15 0.48
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TATATTTAAAAATTATATT
Found at i:8629706 original size:18 final size:18
Alignment explanation
Indices: 8629679--8629713 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8629669 ATAAATATTA
*
8629679 TAAAGACATTTTTAATGC
1 TAAAGACATTTTAAATGC
*
8629697 TAAAGTCATTTTAAATG
1 TAAAGACATTTTAAATG
8629714 TCACATATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.40
Consensus pattern (18 bp):
TAAAGACATTTTAAATGC
Found at i:8630139 original size:5 final size:5
Alignment explanation
Indices: 8630129--8630163 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
8630119 TAGCTTGTTT
*
8630129 TTTTA TTTTA TTTTA TTGTTA GTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TT-TTA TTTTA TTTTA TTTT
8630164 TTTAAAATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
5 23 0.85
6 4 0.15
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:8630883 original size:15 final size:15
Alignment explanation
Indices: 8630859--8630888 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8630849 TAACAGAGAG
*
8630859 AGAGGTAGAGAAAGA
1 AGAGGAAGAGAAAGA
8630874 AGAGGAAGAGAAAGA
1 AGAGGAAGAGAAAGA
8630889 TGAGCTGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.40, T:0.03
Consensus pattern (15 bp):
AGAGGAAGAGAAAGA
Found at i:8637054 original size:149 final size:148
Alignment explanation
Indices: 8636848--8637138 Score: 408
Period size: 149 Copynumber: 2.0 Consensus size: 148
8636838 AAAAATACAA
* *
8636848 TTAAAATGTTAATAATAAAAGTTAAAAATATATTAAAAGAATTTTTAAATAGATTATATTTT-AT
1 TTAAAATGTTAATAATAAAAGTTAAAAATATATTAAAAGAATTTTCAAAGAGATTATATTTTGA-
* * * * *
8636912 CATC-TGTCTAATATTATAAAATGATCATTTTATC-TTTTCTAATATTATAGAATGATCATTTTA
65 CA-CATGTCCAACATTATAAAATGATCATTTTATCTTTTTCTAACATTATAAAATGATAATTTTA
*
8636975 CCCTTTAATGAAAAAAGAAAC
129 ACCTTTAAT-AAAAAAGAAAC
* * *
8636996 TTAAAATGTTAATAATAAAAATTTAAAAGTATATTAAAAGAATTTTCAAAGAGGTTATATTTTGA
1 TTAAAATGTTAATAAT-AAAAGTTAAAAATATATTAAAAGAATTTTCAAAGAGATTATATTTTGA
*
8637061 CACATGTCCAACATTATAAAATGATCATTTTATCTTTTTTTAACATTATAAAATGATAATTTTAA
65 CACATGTCCAACATTATAAAATGATCATTTTATCTTTTTCTAACATTATAAAATGATAATTTTAA
*
8637126 GCTTTAATAAAAA
130 CCTTTAATAAAAA
8637139 TAAAATAACA
Statistics
Matches: 126, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
148 17 0.13
149 76 0.60
150 33 0.26
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.41
Consensus pattern (148 bp):
TTAAAATGTTAATAATAAAAGTTAAAAATATATTAAAAGAATTTTCAAAGAGATTATATTTTGAC
ACATGTCCAACATTATAAAATGATCATTTTATCTTTTTCTAACATTATAAAATGATAATTTTAAC
CTTTAATAAAAAAGAAAC
Found at i:8637353 original size:12 final size:12
Alignment explanation
Indices: 8637328--8637366 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
8637318 AAAATAATTT
*
8637328 AAAATATAAATAA
1 AAAATAT-ATTAA
8637341 AAAATATATTAA
1 AAAATATATTAA
8637353 AAAATATATTAA
1 AAAATATATTAA
8637365 AA
1 AA
8637367 GAATTCCCGT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
12 18 0.72
13 7 0.28
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (12 bp):
AAAATATATTAA
Found at i:8641804 original size:52 final size:52
Alignment explanation
Indices: 8641719--8641875 Score: 210
Period size: 52 Copynumber: 3.0 Consensus size: 52
8641709 TATAACCATA
* * * *
8641719 CAAACTTGCCCATTAAGAATCCCTCTCCATTTAGAATTCTTCTCCTGTAAGT
1 CAAACTTGCCTATTAAGAATCCCTTTCCTTTTAGAATTCTTCTCCTGCAAGT
*
8641771 CAAACTTGCCTATTAAGAATCCCTTTCCTTTTAGAATTCTTCTCTTGCAAGT
1 CAAACTTGCCTATTAAGAATCCCTTTCCTTTTAGAATTCTTCTCCTGCAAGT
* **
8641823 CAAACTTACCTATTAAGAATCCTCTTT-CTTTT-GAAATTCTTCTTTTGCAAGT
1 CAAACTTGCCTATTAAGAATCC-CTTTCCTTTTAG-AATTCTTCTCCTGCAAGT
8641875 C
1 C
8641876 TTCTTGTCCA
Statistics
Matches: 96, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
51 1 0.01
52 91 0.95
53 4 0.04
ACGTcount: A:0.26, C:0.25, G:0.09, T:0.39
Consensus pattern (52 bp):
CAAACTTGCCTATTAAGAATCCCTTTCCTTTTAGAATTCTTCTCCTGCAAGT
Found at i:8660874 original size:11 final size:11
Alignment explanation
Indices: 8660858--8660886 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
8660848 ATGATGATAT
8660858 TATTCTAGTAA
1 TATTCTAGTAA
8660869 TATTCTAGTAA
1 TATTCTAGTAA
8660880 TATTCTA
1 TATTCTA
8660887 TATTGATTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.34, C:0.10, G:0.07, T:0.48
Consensus pattern (11 bp):
TATTCTAGTAA
Found at i:8660945 original size:12 final size:11
Alignment explanation
Indices: 8660886--8660949 Score: 51
Period size: 11 Copynumber: 5.8 Consensus size: 11
8660876 GTAATATTCT
*
8660886 ATATTGATTTG
1 ATATTGATTTA
8660897 ATATTGATTTA
1 ATATTGATTTA
* *
8660908 GAGAAT-A-TTA
1 -ATATTGATTTA
* *
8660918 GTGTTGATTTA
1 ATATTGATTTA
8660929 ATATTGATTTAA
1 ATATTGATTT-A
8660941 ATATTGATT
1 ATATTGATT
8660950 AGATGATTAT
Statistics
Matches: 40, Mismatches: 9, Indels: 7
0.71 0.16 0.12
Matches are distributed among these distances:
9 1 0.03
10 4 0.10
11 22 0.55
12 13 0.32
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (11 bp):
ATATTGATTTA
Found at i:8666440 original size:59 final size:58
Alignment explanation
Indices: 8666297--8666758 Score: 530
Period size: 59 Copynumber: 7.9 Consensus size: 58
8666287 TCTTGTGTAG
* *
8666297 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATTATTTTTTTTGAAAATTTACTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAA-TATTTTTTTTG-AAATTTATTTTTAA
8666357 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAATTTATTTTTAA
* *
8666415 GGAAAATTGATACTTTCAACTTTTTCC-AAAAATA--TTTTTTGAAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTG-AAATTTATTTTTAA
**
8666471 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAATATTTTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAATA--TTTTTTTTGAAA-TTT-ATTTTTAA
* * ** **
8666533 GAAAAATTGATACTTTCAACTTTT-TCTCAAAAATCCCTTTTTTAAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAAT-ATTTTTTTTGAAATTTATTTTTAA
* * *
8666592 GAAAAATTGATACTTTCAACTTTT-CCTAAAAA-ATCCTTTTTTGAAATTT-TGCTTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATAT-TTTTTTTGAAATTTAT--TTT-TAA
* ***
8666651 GGAAAATTGATACTTTCAAC-TTTCCCTCAAAA-ACCGTTTTTGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAATTTATTTTTAA
*
8666707 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATAAATTTTTTTTGGAATTT
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAAT--ATTTTTTTTGAAATTT
8666759 TTTATTTTTA
Statistics
Matches: 352, Mismatches: 30, Indels: 40
0.83 0.07 0.09
Matches are distributed among these distances:
55 9 0.03
56 60 0.17
57 39 0.11
58 63 0.18
59 73 0.21
60 50 0.14
61 19 0.05
62 39 0.11
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.45
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAATTTATTTTTAA
Found at i:8666552 original size:118 final size:117
Alignment explanation
Indices: 8666297--8666758 Score: 605
Period size: 118 Copynumber: 3.9 Consensus size: 117
8666287 TCTTGTGTAG
* *
8666297 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATTATTTTTTTTGAAAATTTACTTTTAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-TA--TTTTTTGAAAATTTATTTTTAAGGAAA
**
8666362 ATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTTTGAAATTT-ATTTTTAA
63 ATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAAATTTGATTTCCAA
* *
8666415 GGAAAATTGATACTTTCAACTTTTTC-CAAAAATATTTTTTGAAAATTTATTTCTAAGGAAAATT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAATTTATTTTTAAGGAAAATT
8666479 GATACTTTCAACTTTT-CCTCAAAAATATTTTTTTTTTGAAACTTTGATTTCCAA
66 GATACTTTCAACTTTTCCCT-AAAAATA-TTTTTTTTTGAAA-TTTGATTTCCAA
* * * * *
8666533 GAAAAATTGATACTTTCAACTTTTTCTCAAAAATCCCTTTTTTAAAAATTTATTTTTAAGAAAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAT--ATTTTTTGAAAATTTATTTTTAAGGAAAA
** *
8666598 TTGATACTTTCAACTTTT-CCTAAAAA-ATCCTTTTTTGAAATTTTGCTTTCCAA
64 TTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAAA-TTTGATTTCCAA
* ***
8666651 GGAAAATTGATACTTTCAACTTTCCCTCAAAAACCGTTTTTG-AAATTTATTTTTAAGGAAAATT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAATTTATTTTTAAGGAAAATT
* *
8666715 GATACTTTCAACTTTTCCCTAAAAATAAATTTTTTTTGGAATTT
66 GATACTTTCAACTTTTCCCTAAAAAT-ATTTTTTTTTGAAATTT
8666759 TTTATTTTTA
Statistics
Matches: 308, Mismatches: 25, Indels: 23
0.87 0.07 0.06
Matches are distributed among these distances:
113 3 0.01
114 51 0.17
115 37 0.12
116 28 0.09
117 12 0.04
118 118 0.38
119 8 0.03
120 5 0.02
121 46 0.15
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.45
Consensus pattern (117 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAATTTATTTTTAAGGAAAATT
GATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAAATTTGATTTCCAA
Found at i:8666814 original size:10 final size:10
Alignment explanation
Indices: 8666771--8666923 Score: 59
Period size: 10 Copynumber: 15.0 Consensus size: 10
8666761 TATTTTTATT
*
8666771 TAAAGAAAAA
1 TAAATAAAAA
8666781 TAGAATAATAAA
1 TA-AATAA-AAA
*
8666793 -AAAGTGAAAA
1 TAAA-TAAAAA
8666803 TAAATAAAAA
1 TAAATAAAAA
*
8666813 TAAA-AAAAT
1 TAAATAAAAA
* *
8666822 TAAAGAAAAG
1 TAAATAAAAA
*
8666832 T--A-AAACA
1 TAAATAAAAA
8666839 -AAATAAAAA
1 TAAATAAAAA
8666848 TAAGATAAAGAA
1 TAA-ATAAA-AA
* *
8666860 AAAATATTAAA
1 TAAATA-AAAA
*
8666871 TAAATCTAATCTAA
1 TAAA--TAA--AAA
8666885 TAAATAAAAA
1 TAAATAAAAA
*
8666895 TAAATAAAGA
1 TAAATAAAAA
*
8666905 TAAA-ACAAA
1 TAAATAAAAA
*
8666914 TGAATAAAAA
1 TAAATAAAAA
8666924 ATTCAAAAAA
Statistics
Matches: 107, Mismatches: 19, Indels: 34
0.67 0.12 0.21
Matches are distributed among these distances:
7 3 0.03
8 2 0.02
9 18 0.17
10 42 0.39
11 23 0.21
12 11 0.10
13 2 0.02
14 6 0.06
ACGTcount: A:0.72, C:0.03, G:0.07, T:0.19
Consensus pattern (10 bp):
TAAATAAAAA
Found at i:8667805 original size:33 final size:32
Alignment explanation
Indices: 8667757--8667851 Score: 95
Period size: 32 Copynumber: 3.0 Consensus size: 32
8667747 CCAACCCTCC
*
8667757 AAAAATAAAAAAATAAAAAATAAT-AGATAATTA
1 AAAAAGAAAAAAAT-AAAAATAATCAGATAA-TA
* *
8667790 GAAAAGAAAAAAATAATAATAATCAGATAATA
1 AAAAAGAAAAAAATAAAAATAATCAGATAATA
** * *
8667822 AAAAAGAATCAGATAAAATTAA-CAGATAAT
1 AAAAAGAAAAAAATAAAAATAATCAGATAAT
8667852 TTAAAAAATA
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
31 8 0.15
32 26 0.50
33 18 0.35
ACGTcount: A:0.69, C:0.03, G:0.07, T:0.20
Consensus pattern (32 bp):
AAAAAGAAAAAAATAAAAATAATCAGATAATA
Found at i:8667837 original size:26 final size:25
Alignment explanation
Indices: 8667766--8667837 Score: 83
Period size: 25 Copynumber: 2.8 Consensus size: 25
8667756 CAAAAATAAA
*
8667766 AAAATAAAAAATAATAGATAATTAG
1 AAAATAAAAAATAATAGATAATCAG
*
8667791 AAAAGAAAAAAATAATA-ATAATCAG
1 AAAA-TAAAAAATAATAGATAATCAG
* *
8667816 ATAATAAAAAAGAATCAGATAA
1 AAAATAAAAAATAAT-AGATAA
8667838 AATTAACAGA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
24 9 0.23
25 15 0.38
26 15 0.38
ACGTcount: A:0.69, C:0.03, G:0.08, T:0.19
Consensus pattern (25 bp):
AAAATAAAAAATAATAGATAATCAG
Found at i:8667899 original size:3 final size:3
Alignment explanation
Indices: 8667891--8667945 Score: 103
Period size: 3 Copynumber: 18.7 Consensus size: 3
8667881 ATATATTACA
8667891 AAT AAT AAT AAT AAT AAT -AT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8667938 AAT AAT AA
1 AAT AAT AA
8667946 ATATATACAT
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 49 0.96
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8675228 original size:18 final size:18
Alignment explanation
Indices: 8675207--8675288 Score: 50
Period size: 16 Copynumber: 4.7 Consensus size: 18
8675197 TTTTTTTTTA
8675207 TTATTATTATTTTGTATT
1 TTATTATTATTTTGTATT
*
8675225 TTATATTTTATATTT-TATTT
1 TTAT-TATTAT-TTTGTA-TT
* *
8675245 TTATT-TTA-TATATATT
1 TTATTATTATTTTGTATT
*
8675261 TTA-TATT-TTATGTA-T
1 TTATTATTATTTTGTATT
8675276 TTATTATTCATTT
1 TTATTATT-ATTT
8675289 ATTTATTATT
Statistics
Matches: 51, Mismatches: 4, Indels: 18
0.70 0.05 0.25
Matches are distributed among these distances:
15 5 0.10
16 18 0.35
17 2 0.04
18 9 0.18
19 8 0.16
20 9 0.18
ACGTcount: A:0.26, C:0.01, G:0.02, T:0.71
Consensus pattern (18 bp):
TTATTATTATTTTGTATT
Found at i:8675235 original size:25 final size:25
Alignment explanation
Indices: 8675207--8675255 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
8675197 TTTTTTTTTA
8675207 TTAT-TATTATTTTGTATTTTATATT
1 TTATATATTATTTT-TATTTTATATT
*
8675232 TTATATTTTATTTTTATTTTATAT
1 TTATATATTATTTTTATTTTATAT
8675256 ATATTTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (25 bp):
TTATATATTATTTTTATTTTATATT
Found at i:8675270 original size:7 final size:7
Alignment explanation
Indices: 8675200--8675271 Score: 74
Period size: 7 Copynumber: 9.9 Consensus size: 7
8675190 CCTTGTTTTT
*
8675200 TTTTTTA
1 TTTTATA
8675207 TTATTATTA
1 TT-TTA-TA
*
8675216 TTTTGTA
1 TTTTATA
8675223 TTTTATA
1 TTTTATA
8675230 TTTTATA
1 TTTTATA
8675237 TTTTAT-
1 TTTTATA
*
8675243 TTTTATT
1 TTTTATA
8675250 TTATATATA
1 TT-T-TATA
8675259 TTTTATA
1 TTTTATA
8675266 TTTTAT
1 TTTTAT
8675272 GTATTTATTA
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
6 6 0.11
7 35 0.62
8 6 0.11
9 9 0.16
ACGTcount: A:0.25, C:0.00, G:0.01, T:0.74
Consensus pattern (7 bp):
TTTTATA
Found at i:8675283 original size:7 final size:7
Alignment explanation
Indices: 8675203--8675375 Score: 69
Period size: 7 Copynumber: 24.0 Consensus size: 7
8675193 TGTTTTTTTT
8675203 TTTATTA
1 TTTATTA
8675210 -TTATTA
1 TTTATTA
8675216 TTT-TGTA
1 TTTAT-TA
8675223 TTT-TATA
1 TTTAT-TA
8675230 TTT-TATA
1 TTTAT-TA
8675237 TTTTATT-
1 -TTTATTA
8675244 TTTATT-
1 TTTATTA
8675250 TTATATATA
1 TT-TAT-TA
8675259 TTT-TATA
1 TTTAT-TA
8675266 TTTTATGTA
1 -TTTAT-TA
8675275 TTTATTA
1 TTTATTA
*
8675282 TTCATTTA
1 TTTA-TTA
8675290 TTTATTA
1 TTTATTA
*
8675297 -TTACTA
1 TTTATTA
8675303 TTTATTA
1 TTTATTA
*
8675310 -ATATATA
1 TTTAT-TA
*
8675317 TTTATTT
1 TTTATTA
8675324 TATTATT-
1 T-TTATTA
8675331 TTTATTA
1 TTTATTA
*
8675338 TTTATCTG
1 TTTAT-TA
*
8675346 TTGATATA
1 TTTAT-TA
*
8675354 TATATTA
1 TTTATTA
8675361 TTTATCTA
1 TTTAT-TA
*
8675369 TTAATTA
1 TTTATTA
8675376 ATATATTATC
Statistics
Matches: 132, Mismatches: 17, Indels: 34
0.72 0.09 0.19
Matches are distributed among these distances:
6 28 0.21
7 55 0.42
8 43 0.33
9 6 0.05
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.66
Consensus pattern (7 bp):
TTTATTA
Found at i:8675292 original size:31 final size:29
Alignment explanation
Indices: 8675200--8675371 Score: 85
Period size: 29 Copynumber: 5.9 Consensus size: 29
8675190 CCTTGTTTTT
*
8675200 TTTTTTATTATTATTATTT-TGTATT-TTATA
1 TTTTATATT-TTATTATTTAT-TATTATT-TA
*
8675230 TTTTATATTTTATT-TTTATT-TTATATA
1 TTTTATATTTTATTATTTATTATTATTTA
* *
8675257 TATTTTATATTTTATGTATTTATTATTCATTTA
1 TTTTATAT--TTTAT-TATTTATTATT-ATTTA
* * *
8675290 -TTTAT-TATTACTATTTATTA--ATATA
1 TTTTATATTTTATTATTTATTATTATTTA
*
8675315 TATT-TATTTTATTATTT-TTATTATTTA
1 TTTTATATTTTATTATTTATTATTATTTA
*
8675342 TCTGTTGATATATATATTATTTATCTATTA
1 T-T-TT-ATAT-TTTATTATTTAT-TATTA
8675372 ATTAATATAT
Statistics
Matches: 107, Mismatches: 16, Indels: 34
0.68 0.10 0.22
Matches are distributed among these distances:
25 8 0.07
26 11 0.10
27 15 0.14
28 14 0.13
29 16 0.15
30 9 0.08
31 10 0.09
32 14 0.13
33 5 0.05
34 5 0.05
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (29 bp):
TTTTATATTTTATTATTTATTATTATTTA
Found at i:8675362 original size:23 final size:23
Alignment explanation
Indices: 8675273--8675384 Score: 78
Period size: 23 Copynumber: 5.1 Consensus size: 23
8675263 ATATTTTATG
* * *
8675273 TATTTAT-TATTCATTTATTTAT
1 TATTTATCTATTAATTAATATAT
*
8675295 TA-TTA-CTATTTATTAATATA-
1 TATTTATCTATTAATTAATATAT
* *
8675315 TATTTAT-T-TT-ATTATTTTTAT
1 TATTTATCTATTAATTA-ATATAT
* *
8675336 TATTTATCTGTTGA-TATATATAT
1 TATTTATCTATTAATTA-ATATAT
8675359 TATTTATCTATTAATTAATATAT
1 TATTTATCTATTAATTAATATAT
8675382 TAT
1 TAT
8675385 CTTTGTTATT
Statistics
Matches: 72, Mismatches: 9, Indels: 17
0.73 0.09 0.17
Matches are distributed among these distances:
19 4 0.06
20 7 0.10
21 25 0.35
22 3 0.04
23 30 0.42
24 3 0.04
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (23 bp):
TATTTATCTATTAATTAATATAT
Found at i:8676298 original size:26 final size:23
Alignment explanation
Indices: 8676250--8676298 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 23
8676240 CGTTCTCAGG
8676250 TTTTTTTTTTTATTATTATTATT
1 TTTTTTTTTTTATTATTATTATT
8676273 TTTTTCTTTATTTATTTATTATTATT
1 TTTTT-TTT-TTTA-TTATTATTATT
8676299 ATTATATTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 5 0.22
24 3 0.13
25 4 0.17
26 11 0.48
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (23 bp):
TTTTTTTTTTTATTATTATTATT
Found at i:8676573 original size:60 final size:57
Alignment explanation
Indices: 8676393--8676609 Score: 222
Period size: 60 Copynumber: 3.7 Consensus size: 57
8676383 AAAAAATAAA
* * * * *
8676393 AAAAAACATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTTTCGAAATTAAAAATTCC
1 AAAAAATATTTTT-AGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTTAAATTTTC
* * *
8676451 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT-TAAGA-ATAAATTTTC
1 AAAAAATATTTTTA-GGAAAAGTTGAAAGTATCAATTTTTCTCGAA-ATTTAAATTTTC
* * *
8676508 AAAAAAGGTTTTTTTTTAGGAAAAGTTAAAAGTATCAATTTTTCTCGAAATTTAAGTTTTC
1 AAAAAA----TATTTTTAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTTAAATTTTC
*
8676569 AAAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTT
1 --AAAAAATATTTTTAGG-AAAAGTTGAAAGTATCAATTTT
8676610 CCCTTGTACA
Statistics
Matches: 131, Mismatches: 17, Indels: 20
0.78 0.10 0.12
Matches are distributed among these distances:
57 15 0.11
58 38 0.29
59 8 0.06
60 47 0.36
61 17 0.13
63 6 0.05
ACGTcount: A:0.43, C:0.06, G:0.13, T:0.37
Consensus pattern (57 bp):
AAAAAATATTTTTAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTTAAATTTTC
Found at i:8680541 original size:14 final size:14
Alignment explanation
Indices: 8680522--8680569 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
8680512 AACAATGGAT
8680522 GAAAAAAAGATGAA
1 GAAAAAAAGATGAA
*
8680536 GAAAAAAAAAT-AA
1 GAAAAAAAGATGAA
*
8680549 -AAAAAAAGAAAGAA
1 GAAAAAAAG-ATGAA
8680563 GAAAAAA
1 GAAAAAA
8680570 TGAGAAAATG
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
12 7 0.25
13 3 0.11
14 12 0.43
15 6 0.21
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (14 bp):
GAAAAAAAGATGAA
Found at i:8680550 original size:24 final size:24
Alignment explanation
Indices: 8680523--8680570 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 24
8680513 ACAATGGATG
8680523 AAAAAAAGATGAAGAAAAAAAAATAA
1 AAAAAAAGA--AAGAAAAAAAAATAA
*
8680549 AAAAAAAGAAAGAAGAAAAAAT
1 AAAAAAAGAAAGAAAAAAAAAT
8680571 GAGAAAATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 12 0.57
26 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.12, T:0.06
Consensus pattern (24 bp):
AAAAAAAGAAAGAAAAAAAAATAA
Found at i:8680569 original size:17 final size:16
Alignment explanation
Indices: 8680537--8680587 Score: 50
Period size: 17 Copynumber: 3.2 Consensus size: 16
8680527 AAAGATGAAG
*
8680537 AAAA-AAAAATAAAAA
1 AAAAGAAAAAGAAAAA
8680552 AAAAGAAAGAAGAAAAA
1 AAAAGAAA-AAGAAAAA
** *
8680569 ATGAGAAAATGAAAAA
1 AAAAGAAAAAGAAAAA
8680585 AAA
1 AAA
8680588 GATTCAAATT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
15 4 0.14
16 11 0.39
17 13 0.46
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.06
Consensus pattern (16 bp):
AAAAGAAAAAGAAAAA
Found at i:8680577 original size:24 final size:24
Alignment explanation
Indices: 8680520--8680577 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
8680510 TCAACAATGG
8680520 ATGAAAAAAAGATGAAGAAAAAAAA
1 ATGAAAAAAAGA-GAAGAAAAAAAA
* *
8680545 AT-AAAAAAAAAGAAAGAAGAAAAA
1 ATGAAAAAAAGAG-AAGAAAAAAAA
*
8680569 ATGAGAAAA
1 ATGAAAAAA
8680578 TGAAAAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
23 1 0.04
24 20 0.71
25 7 0.25
ACGTcount: A:0.78, C:0.00, G:0.16, T:0.07
Consensus pattern (24 bp):
ATGAAAAAAAGAGAAGAAAAAAAA
Found at i:8682069 original size:43 final size:42
Alignment explanation
Indices: 8682015--8682096 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 42
8682005 GCCTTTGAAC
* *
8682015 TCAAATGAAAAGCTTT-GAATTTTTGGATGTGAATTTCTAAAAT
1 TCAAATAAAAAGCTTTAG-ATTTTTGGATATGAA-TTCTAAAAT
8682058 TCAAATAAAAAGCTTTAGATTTTTGGATATGAATTCTAA
1 TCAAATAAAAAGCTTTAGATTTTTGGATATGAATTCTAA
8682097 GTTTGCCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
42 6 0.17
43 29 0.81
44 1 0.03
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (42 bp):
TCAAATAAAAAGCTTTAGATTTTTGGATATGAATTCTAAAAT
Found at i:8682506 original size:42 final size:41
Alignment explanation
Indices: 8682419--8682606 Score: 220
Period size: 42 Copynumber: 4.6 Consensus size: 41
8682409 AGTTTCGTTG
** *
8682419 CCTCTGTTTAGAGGAGCAATTTACTTT-CAAAGTTGTTGTG
1 CCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTTGAGGTA
*
8682459 CCTCTGTTTAGAGGAGTAATTTACTTTCCAAAAGTTGAGGTA
1 CCTCTGTTTAGAGGAGCAATTTACTTTCC-AAAGTTGAGGTA
* * * * *
8682501 CCTCTGTTTAAAGGAGCAATTTACTTTTCAAAGTTGTGCTG
1 CCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTTGAGGTA
8682542 CCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAGTT-ATGG-A
1 CCTCTGTTTAGAGGAGCAATTTACTTTCC-AAAGTTGA-GGTA
* *
8682583 GCCTCTGATTAGAGGAGCCATTTA
1 -CCTCTGTTTAGAGGAGCAATTTA
8682607 TTCATTTTCA
Statistics
Matches: 126, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
40 26 0.21
41 37 0.29
42 63 0.50
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.36
Consensus pattern (41 bp):
CCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTTGAGGTA
Found at i:8682546 original size:41 final size:40
Alignment explanation
Indices: 8682389--8682685 Score: 258
Period size: 41 Copynumber: 7.1 Consensus size: 40
8682379 GACTGTCAAT
*
8682389 GAGCAATTTATTTTTTCCAAAGTT-TCGTTGCCTCTGTTTAGAG
1 GAGCAATTTA-CTTTT-CAAAGTTGT-G-TGCCTCTGTTTAGAG
8682432 GAGCAATTTAC-TTTCAAAGTTGTTGTGCCTCTGTTTAGAG
1 GAGCAATTTACTTTTCAAAGTTG-TGTGCCTCTGTTTAGAG
* * * * *
8682472 GAGTAATTTACTTTCCAAAAGTTGAGGTACCTCTGTTTAAAG
1 GAGCAATTTACTTTTC-AAAGTTG-TGTGCCTCTGTTTAGAG
8682514 GAGCAATTTACTTTTCAAAGTTGTGCTGCCTCTGTTTAGAG
1 GAGCAATTTACTTTTCAAAGTTGTG-TGCCTCTGTTTAGAG
* * * *
8682555 GAGCAATTTACTTTCCAAAAGTTATGGAGCCTCTGATTAGAG
1 GAGCAATTTACTTTTC-AAAGTTGT-GTGCCTCTGTTTAGAG
* * *
8682597 GAGCCATTTATTCATTTTCAAAGTCGT-TGAACCTCTATTTAGAG
1 GAGCAATTTA--C-TTTTCAAAGTTGTGTG--CCTCTGTTTAGAG
* * * * * *
8682641 GAGCTATTTATTTTTCAAAATCGTTGAGCCTCTGCTTAGAG
1 GAGCAATTTACTTTTCAAAGTTG-TGTGCCTCTGTTTAGAG
8682682 GAGC
1 GAGC
8682686 TTTGATCAAA
Statistics
Matches: 211, Mismatches: 29, Indels: 30
0.78 0.11 0.11
Matches are distributed among these distances:
40 33 0.16
41 68 0.32
42 67 0.32
43 12 0.06
44 27 0.13
45 4 0.02
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.38
Consensus pattern (40 bp):
GAGCAATTTACTTTTCAAAGTTGTGTGCCTCTGTTTAGAG
Found at i:8682551 original size:83 final size:83
Alignment explanation
Indices: 8682418--8682685 Score: 312
Period size: 83 Copynumber: 3.2 Consensus size: 83
8682408 AAGTTTCGTT
*
8682418 GCCTCTGTTTAGAGGAGCAATTTAC-TTTCAAAGTTGTTGTGCCTCTGTTTAGAGGAGTAATTTA
1 GCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTGTTGTGCCTCTGTTTAGAGGAGCAATTTA
8682482 CTTTCCAAAAGTTGA-GGTA
66 CTTTCCAAAAGTT-ATGG-A
*
8682501 -CCTCTGTTTAAAGGAGCAATTTACTTTTCAAAGTTG-TGCTGCCTCTGTTTAGAGGAGCAATTT
1 GCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTGTTG-TGCCTCTGTTTAGAGGAGCAATTT
8682564 ACTTTCCAAAAGTTATGGA
65 ACTTTCCAAAAGTTATGGA
* * * ** * *
8682583 GCCTCTGATTAGAGGAGCCATTTATTCATTTTCAAAGTCGTTGAACCTCTATTTAGAGGAGCTAT
1 GCCTCTGTTTAGAGGAGCAATTTA--C-TTTTCAAAGTTGTTGTGCCTCTGTTTAGAGGAGCAAT
* * ** *
8682648 TTATTTTTCAAAA-TCGTTGA
63 TTACTTTCCAAAAGTTATGGA
*
8682668 GCCTCTGCTTAGAGGAGC
1 GCCTCTGTTTAGAGGAGC
8682686 TTTGATCAAA
Statistics
Matches: 161, Mismatches: 16, Indels: 14
0.84 0.08 0.07
Matches are distributed among these distances:
82 27 0.17
83 70 0.43
85 22 0.14
86 40 0.25
87 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.37
Consensus pattern (83 bp):
GCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTGTTGTGCCTCTGTTTAGAGGAGCAATTTA
CTTTCCAAAAGTTATGGA
Found at i:8682704 original size:1 final size:1
Alignment explanation
Indices: 8682698--8682749 Score: 59
Period size: 1 Copynumber: 52.0 Consensus size: 1
8682688 TGATCAAATT
* * * * *
8682698 AAAAAAAAAAACAAAAAAAAACAAAAAACAAAAAAATAAAAAAATAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
8682750 TTTGCCTCTG
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 41 1.00
ACGTcount: A:0.90, C:0.06, G:0.00, T:0.04
Consensus pattern (1 bp):
A
Found at i:8682718 original size:17 final size:17
Alignment explanation
Indices: 8682698--8682741 Score: 70
Period size: 17 Copynumber: 2.5 Consensus size: 17
8682688 TGATCAAATT
8682698 AAAAAAAAAAACAAAAA
1 AAAAAAAAAAACAAAAA
*
8682715 AAAACAAAAAACAAAAA
1 AAAAAAAAAAACAAAAA
8682732 AATAAAAAAA
1 AA-AAAAAAA
8682742 TAAAAAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 18 0.75
18 6 0.25
ACGTcount: A:0.91, C:0.07, G:0.00, T:0.02
Consensus pattern (17 bp):
AAAAAAAAAAACAAAAA
Found at i:8682750 original size:16 final size:16
Alignment explanation
Indices: 8682698--8682750 Score: 72
Period size: 16 Copynumber: 3.3 Consensus size: 16
8682688 TGATCAAATT
8682698 AAAA-AAAAAAACAAA
1 AAAATAAAAAAACAAA
*
8682713 AAAAAACAAAAAACAAA
1 AAAATA-AAAAAACAAA
*
8682730 AAAATAAAAAAATAAA
1 AAAATAAAAAAACAAA
8682746 AAAAT
1 AAAAT
8682751 TTGCCTCTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
15 4 0.12
16 15 0.44
17 15 0.44
ACGTcount: A:0.89, C:0.06, G:0.00, T:0.06
Consensus pattern (16 bp):
AAAATAAAAAAACAAA
Found at i:8682814 original size:43 final size:43
Alignment explanation
Indices: 8682753--8683071 Score: 399
Period size: 43 Copynumber: 7.4 Consensus size: 43
8682743 AAAAAAATTT
* * * *
8682753 GCCTCTGTTTAGGGGAGCTTTGTTTATTTTTGAAAGTCGTTGA
1 GCCTCTGATTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTGA
* *
8682796 GCCTCTAATTAGAGGAGCTTTATTTATTTTCCAAAGTCGTTGA
1 GCCTCTGATTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTGA
8682839 GCCTCTGATTAGAGGAGCTTTATTTATTTTTCAAAGTCGTT-A
1 GCCTCTGATTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTGA
** *
8682881 GGCCTCTGATTAGAAAAGCTTTATTTATTCTTCAAAGTCGTTGA
1 -GCCTCTGATTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTGA
* * * *
8682925 GCCTTTGATTAGAGGAGCTTTATTTATTCTTCAAAGTCATTAA
1 GCCTCTGATTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTGA
* * * *
8682968 GCCTCTGATTAAAGGAGCTTTATTCATCTTT-AAAGTTGTTGA
1 GCCTCTGATTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTGA
* * * *
8683010 GCCTCTGATTAGAAGAGCATTGTTTATGTTTTTCAAAGTCTTTGA
1 GCCTCTGATTAGAGGAGCTTTATTTA--TTTTTCAAAGTCGTTGA
*
8683055 GCCTCTGCTTAGAGGAG
1 GCCTCTGATTAGAGGAG
8683072 TTTTGATCAA
Statistics
Matches: 237, Mismatches: 34, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
42 30 0.13
43 178 0.75
44 5 0.02
45 24 0.10
ACGTcount: A:0.24, C:0.15, G:0.21, T:0.40
Consensus pattern (43 bp):
GCCTCTGATTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTGA
Found at i:8683287 original size:7 final size:7
Alignment explanation
Indices: 8683275--8683373 Score: 60
Period size: 7 Copynumber: 14.3 Consensus size: 7
8683265 CACCTTGTTT
8683275 TTTTTTA
1 TTTTTTA
8683282 TTTTTTA
1 TTTTTTA
*
8683289 -TTATTA
1 TTTTTTA
*
8683295 TTTTGTA
1 TTTTTTA
*
8683302 TTTTATA
1 TTTTTTA
8683309 TTTTTT-
1 TTTTTTA
*
8683315 TATTTTA
1 TTTTTTA
8683322 -TTTTTA
1 TTTTTTA
*
8683328 TTTTATA
1 TTTTTTA
* *
8683335 TATATTA
1 TTTTTTA
*
8683342 TATTTTA
1 TTTTTTA
*
8683349 TGTATTTA
1 T-TTTTTA
* *
8683357 TTATTCA
1 TTTTTTA
8683364 TTTATTTA
1 TTT-TTTA
8683372 TT
1 TT
8683374 ATTACTATTT
Statistics
Matches: 70, Mismatches: 17, Indels: 9
0.73 0.18 0.09
Matches are distributed among these distances:
6 15 0.21
7 45 0.64
8 10 0.14
ACGTcount: A:0.23, C:0.01, G:0.02, T:0.74
Consensus pattern (7 bp):
TTTTTTA
Found at i:8683287 original size:10 final size:10
Alignment explanation
Indices: 8683272--8683331 Score: 57
Period size: 11 Copynumber: 5.4 Consensus size: 10
8683262 GTCCACCTTG
8683272 TTTTTTTTTA
1 TTTTTTTTTA
8683282 TTTTTTATTATTA
1 -TTTTT-TT-TTA
8683295 TTTTGTATTTTA
1 TTTT-T-TTTTA
*
8683307 TATTTTTTTA
1 TTTTTTTTTA
8683317 TTTTATTTTTA
1 TTTT-TTTTTA
8683328 TTTT
1 TTTT
8683332 ATATATATTA
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
10 8 0.19
11 16 0.37
12 12 0.28
13 7 0.16
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.82
Consensus pattern (10 bp):
TTTTTTTTTA
Found at i:8683320 original size:35 final size:37
Alignment explanation
Indices: 8683274--8683370 Score: 103
Period size: 33 Copynumber: 2.6 Consensus size: 37
8683264 CCACCTTGTT
*
8683274 TTTTTTTATTTTTTATTATTATTTTGTAT-T-TTATA
1 TTTTTTTATTTTTTATTATTATTTTATATATATTATA
*
8683309 TTTTTTTA--TTTTATTTTTATTTTATATATATTATA
1 TTTTTTTATTTTTTATTATTATTTTATATATATTATA
* *
8683344 TTTTATGTATTTATTATTCATTTATTT
1 TTTT-TTTATTTTTTATT-A-TTATTT
8683371 ATTATTACTA
Statistics
Matches: 50, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
33 17 0.34
34 1 0.02
35 17 0.34
36 3 0.06
38 6 0.12
40 6 0.12
ACGTcount: A:0.23, C:0.01, G:0.02, T:0.74
Consensus pattern (37 bp):
TTTTTTTATTTTTTATTATTATTTTATATATATTATA
Found at i:8683323 original size:20 final size:18
Alignment explanation
Indices: 8683272--8683331 Score: 66
Period size: 20 Copynumber: 3.1 Consensus size: 18
8683262 GTCCACCTTG
8683272 TTTTTTTTTATTTTTTATT
1 TTTTTTTTTA-TTTTTATT
* *
8683291 ATTATTTTGTATTTTATATT
1 -TTTTTTTTTATTTT-TATT
8683311 TTTTTATTTTATTTTTATT
1 TTTTT-TTTTATTTTTATT
8683330 TT
1 TT
8683332 ATATATATTA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
19 14 0.41
20 20 0.59
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.82
Consensus pattern (18 bp):
TTTTTTTTTATTTTTATT
Found at i:8683324 original size:40 final size:40
Alignment explanation
Indices: 8683272--8683423 Score: 130
Period size: 40 Copynumber: 3.6 Consensus size: 40
8683262 GTCCACCTTG
*
8683272 TTTTTTTTTATTTTTTATTATTATTTTGTATTTTATATTT-
1 TTTTATTTTATTTTTTATTATTATTTT-TATTTTATATTTA
* *
8683312 TTTTATTTTATTTTTATTTTATATATATTATATTTTATGTATTTA
1 TTTTATTTTATTTTT-TATTAT-TAT-TTTTATTTTA--TATTTA
* * * *
8683357 TTATTCA-TTTATTTATTATTACTATTTATTAATCTATATTTA
1 TT-TT-ATTTTATTTTTTATTATTATTT-TTATTTTATATTTA
*
8683399 TTTTATTTTATTATTT-TTATTATTT
1 TTTTATTTTATTTTTTATTATTATTT
8683424 ATCTATTGAT
Statistics
Matches: 90, Mismatches: 12, Indels: 20
0.74 0.10 0.16
Matches are distributed among these distances:
40 23 0.26
41 15 0.17
42 18 0.20
43 4 0.04
44 13 0.14
45 6 0.07
46 10 0.11
47 1 0.01
ACGTcount: A:0.24, C:0.02, G:0.01, T:0.72
Consensus pattern (40 bp):
TTTTATTTTATTTTTTATTATTATTTTTATTTTATATTTA
Found at i:8683358 original size:4 final size:4
Alignment explanation
Indices: 8683278--8683484 Score: 55
Period size: 4 Copynumber: 52.5 Consensus size: 4
8683268 CTTGTTTTTT
* * *
8683278 TTTA TTT- TTTA -TTA -TTA TTT- TGTA TTT- TATA TTTT TTTA TTT-
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* * * *
8683320 TATT- TTTA TTT- TATA TATA TTATA TTTTA TGTA TTTA -TTA TTCA TTTA
1 T-TTA TTTA TTTA TTTA TTTA TT-TA -TTTA TTTA TTTA TTTA TTTA TTTA
* *
8683368 TTTA -TTA TTACTA TTTA TTAA TCTATA TTTA TTTTA TTT- TATTA TTTT
1 TTTA TTTA TT--TA TTTA TTTA T-T-TA TTTA -TTTA TTTA T-TTA TTTA
* * * * * * *
8683416 TATTA TTTA TCTA TTGA TATA TATA TGTA -TTA -TTA GTTA TCTA TTTA
1 T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* *
8683463 TATA TATTA -TTA TTTA TCTA TT
1 TTTA T-TTA TTTA TTTA TTTA TT
8683485 AATTAATATA
Statistics
Matches: 151, Mismatches: 30, Indels: 44
0.67 0.13 0.20
Matches are distributed among these distances:
3 33 0.22
4 94 0.62
5 16 0.11
6 8 0.05
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.67
Consensus pattern (4 bp):
TTTA
Found at i:8683401 original size:46 final size:42
Alignment explanation
Indices: 8683277--8683479 Score: 127
Period size: 46 Copynumber: 4.8 Consensus size: 42
8683267 CCTTGTTTTT
* *
8683277 TTTTATTT-TTTATTATTATTTTGTATT--TTATATTTTTTTA
1 TTTTATTTATTTATTATTATATT-TATTAATTATATTTATTTA
* * *
8683317 TTTTA-TT-TTTATT-TTATATATATTATATTTTATGTATTTA
1 TTTTATTTATTTATTATTATATTTATTA-ATTATATTTATTTA
8683357 TTATTCATTTATTTATTATTACTATTTATTAATCTATATTTATTTTA
1 TT-TT-ATTTATTTATTATTA-TATTTATTAAT-TATATTTA-TTTA
* * * * *
8683404 TTTTATTATTTTTATTATT-TATCTATTGA-TATATATATGTA
1 TTTTATT-TATTTATTATTATATTTATTAATTATATTTATTTA
* * *
8683445 TTATTAGTTATCTATT-TATATATATTATTATTTAT
1 TT-TTATTTATTTATTAT-TATAT-TTATTAATTAT
8683480 CTATTAATTA
Statistics
Matches: 127, Mismatches: 19, Indels: 30
0.72 0.11 0.17
Matches are distributed among these distances:
37 4 0.03
38 5 0.04
39 8 0.06
40 18 0.14
41 14 0.11
42 15 0.12
43 6 0.05
44 17 0.13
45 8 0.06
46 26 0.20
47 6 0.05
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (42 bp):
TTTTATTTATTTATTATTATATTTATTAATTATATTTATTTA
Done.