Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14313602
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 50000 characters in sequence are not A, C, G, or T
File 43 of 74
Found at i:8793499 original size:26 final size:26
Alignment explanation
Indices: 8793464--8793518 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
8793454 TTTAAATTTT
8793464 AAAATATATTTAAAATATTAATA-TA
1 AAAATATATTTAAAATATTAATAGTA
* *
8793489 AAAATATTATTTTAAATTTTAATAGTA
1 AAAATA-TATTTAAAATATTAATAGTA
8793516 AAA
1 AAA
8793519 TGGGCCTACT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 6 0.23
26 15 0.58
27 5 0.19
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (26 bp):
AAAATATATTTAAAATATTAATAGTA
Found at i:8808128 original size:2 final size:2
Alignment explanation
Indices: 8808121--8808148 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8808111 CATAATTTGG
8808121 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8808149 AAACTTGACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8816161 original size:3 final size:3
Alignment explanation
Indices: 8816153--8816196 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
8816143 TCACATTGCT
8816153 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
8816197 GTTCACATTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8824286 original size:51 final size:51
Alignment explanation
Indices: 8824190--8824289 Score: 130
Period size: 51 Copynumber: 2.0 Consensus size: 51
8824180 TTTAAATTTT
* *
8824190 TTAAAATTTTATTAATGATATTTTAATCAATCACTTTTAATATTTTTTAAA
1 TTAAAATTTCATTAATGATATTTTAATCAATCACTTTTAACATTTTTTAAA
* * * *
8824241 TTAAAATTTCATTAATGGTATTTTAGTCAATTA-TTCTTAGCATTTTTTA
1 TTAAAATTTCATTAATGATATTTTAATCAATCACTT-TTAACATTTTTTA
8824290 GTCTAAGTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
50 2 0.05
51 40 0.95
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (51 bp):
TTAAAATTTCATTAATGATATTTTAATCAATCACTTTTAACATTTTTTAAA
Found at i:8827936 original size:4 final size:4
Alignment explanation
Indices: 8827927--8827958 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
8827917 GGACATGCTG
8827927 AAGA AAGA AAGA AAGA AAGA AAGA AA-A AAGA A
1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA A
8827959 CCCCTTACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.11
4 24 0.89
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:8828630 original size:23 final size:23
Alignment explanation
Indices: 8828604--8828673 Score: 58
Period size: 23 Copynumber: 3.1 Consensus size: 23
8828594 AAATGAGATT
8828604 TAGCCATAACGCATAGAACAATA
1 TAGCCATAACGCATAGAACAATA
* * * *
8828627 TAGCC--GAC-AATTGAA-ATCATT
1 TAGCCATAACGCATAGAACA--ATA
8828648 TAGCCATAACGCATAGAACAATA
1 TAGCCATAACGCATAGAACAATA
8828671 TAG
1 TAG
8828674 TCGACAATTG
Statistics
Matches: 33, Mismatches: 8, Indels: 12
0.62 0.15 0.23
Matches are distributed among these distances:
19 1 0.03
20 5 0.15
21 9 0.27
23 12 0.36
24 5 0.15
25 1 0.03
ACGTcount: A:0.44, C:0.20, G:0.14, T:0.21
Consensus pattern (23 bp):
TAGCCATAACGCATAGAACAATA
Found at i:8828664 original size:44 final size:44
Alignment explanation
Indices: 8828601--8828688 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
8828591 ACTAAATGAG
8828601 ATTTAGCCATAACGCATAGAACAATATAGCCGACAATTGAAATC
1 ATTTAGCCATAACGCATAGAACAATATAGCCGACAATTGAAATC
*
8828645 ATTTAGCCATAACGCATAGAACAATATAGTCGACAATTGAAATC
1 ATTTAGCCATAACGCATAGAACAATATAGCCGACAATTGAAATC
8828689 TTCAATCGAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.43, C:0.19, G:0.14, T:0.24
Consensus pattern (44 bp):
ATTTAGCCATAACGCATAGAACAATATAGCCGACAATTGAAATC
Found at i:8829850 original size:14 final size:15
Alignment explanation
Indices: 8829831--8829861 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
8829821 TATTATCTGA
8829831 TTTATTATC-TTTCT
1 TTTATTATCTTTTCT
8829845 TTTATTATCTTTTCT
1 TTTATTATCTTTTCT
8829860 TT
1 TT
8829862 ATCTGTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTATTATCTTTTCT
Found at i:8830753 original size:7 final size:7
Alignment explanation
Indices: 8830741--8830769 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
8830731 TAGTGTAAAT
8830741 GGTTCAC
1 GGTTCAC
8830748 GGTTCAC
1 GGTTCAC
8830755 GGTTCAC
1 GGTTCAC
8830762 GGTTCAC
1 GGTTCAC
8830769 G
1 G
8830770 ACGGTAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.28, G:0.31, T:0.28
Consensus pattern (7 bp):
GGTTCAC
Found at i:8831401 original size:18 final size:18
Alignment explanation
Indices: 8831381--8831414 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8831371 TATATATAAT
8831381 TTTTA-TTATTTATTTTG
1 TTTTATTTATTTATTTTG
*
8831398 TTTTATTTGTTTATTTT
1 TTTTATTTATTTATTTT
8831415 AAAAATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.15, C:0.00, G:0.06, T:0.79
Consensus pattern (18 bp):
TTTTATTTATTTATTTTG
Found at i:8832229 original size:21 final size:20
Alignment explanation
Indices: 8832197--8832238 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 20
8832187 AAAAATTTAG
8832197 AAATGAAATTTGTAAAATAAA
1 AAATGAAATTTG-AAAATAAA
*
8832218 AAAT-AAATTTTGAAGATAAA
1 AAATGAAA-TTTGAAAATAAA
8832238 A
1 A
8832239 TTCTAAGAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.29
Consensus pattern (20 bp):
AAATGAAATTTGAAAATAAA
Found at i:8834147 original size:18 final size:18
Alignment explanation
Indices: 8834124--8834163 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
8834114 ATTTTTATTT
*
8834124 TATAAAATTTAA-AAAATA
1 TATAAAAATTAATAAAA-A
8834142 TATAAAAATTAATAAAAA
1 TATAAAAATTAATAAAAA
8834160 TATA
1 TATA
8834164 TCAGTTTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TATAAAAATTAATAAAAA
Found at i:8836664 original size:6 final size:6
Alignment explanation
Indices: 8836620--8836653 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
8836610 TTAATATAGT
*
8836620 TATATAA TATAAA TATAAA TATAAA TATATA TAT
1 TATA-AA TATAAA TATAAA TATAAA TATAAA TAT
8836654 TATATACATA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
6 22 0.85
7 4 0.15
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (6 bp):
TATAAA
Found at i:8837117 original size:2 final size:2
Alignment explanation
Indices: 8837110--8837142 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
8837100 GATCTACTTG
8837110 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8837143 AGTTAAAACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8838113 original size:15 final size:14
Alignment explanation
Indices: 8838073--8838123 Score: 57
Period size: 15 Copynumber: 3.5 Consensus size: 14
8838063 CTTTTTTTGG
*
8838073 TTTTTGTTTTATAT
1 TTTTTATTTTATAT
*
8838087 TTTGTTACTTTATAT
1 TTT-TTATTTTATAT
*
8838102 TTTTATATTTTAAAT
1 TTTT-TATTTTATAT
8838117 TTTTTAT
1 TTTTTAT
8838124 GCACTTTTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
14 7 0.23
15 24 0.77
ACGTcount: A:0.22, C:0.02, G:0.04, T:0.73
Consensus pattern (14 bp):
TTTTTATTTTATAT
Found at i:8840105 original size:31 final size:31
Alignment explanation
Indices: 8840046--8840125 Score: 83
Period size: 31 Copynumber: 2.5 Consensus size: 31
8840036 ATTGAATTTA
8840046 TTATTATTTTTTAAAATGTCTAAATTTTAAT-
1 TTATTATTTTTTAAAATGTCTAAATTTT-ATG
* * *
8840077 TTATTATTTTTATAAAAT-TTTCAGTTTTATG
1 TTATTATTTTT-TAAAATGTCTAAATTTTATG
*
8840108 TTATTATTGTTTGAAAAT
1 TTATTATT-TTTTAAAAT
8840126 AAATATCAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
30 2 0.05
31 31 0.74
32 9 0.21
ACGTcount: A:0.33, C:0.03, G:0.06, T:0.59
Consensus pattern (31 bp):
TTATTATTTTTTAAAATGTCTAAATTTTATG
Found at i:8847256 original size:64 final size:62
Alignment explanation
Indices: 8847124--8847247 Score: 153
Period size: 64 Copynumber: 2.0 Consensus size: 62
8847114 TATTTATCTT
* * ** * *
8847124 ATTTTGTTTTTATTCTTAAAGAATTTAGGAAAAGTTGATATTTCAATTTTTTCCTTATATTTTT
1 ATTTTGTTTTTATTCTTAAAGAATTTAGGAAAA--TAATATTTAAACCTTTTCCTAATATTTTA
8847188 ATTTTGTTTTTATTCTTAAAGAATTTA-GAAAA-AATATTTAAACCTTTTCCTAAATATTTT
1 ATTTTGTTTTTATTCTTAAAGAATTTAGGAAAATAATATTTAAACCTTTTCCT-AATATTTT
8847248 CAAAATTTTA
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
60 15 0.28
61 7 0.13
63 5 0.09
64 27 0.50
ACGTcount: A:0.32, C:0.07, G:0.07, T:0.53
Consensus pattern (62 bp):
ATTTTGTTTTTATTCTTAAAGAATTTAGGAAAATAATATTTAAACCTTTTCCTAATATTTTA
Found at i:8847518 original size:20 final size:20
Alignment explanation
Indices: 8847495--8847538 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
8847485 AAAAATATTG
8847495 AAAAAAATGAAAAAAATACA
1 AAAAAAATGAAAAAAATACA
** *
8847515 AAAATTATGAAAAAGATACA
1 AAAAAAATGAAAAAAATACA
8847535 AAAA
1 AAAA
8847539 TGCCCTTAGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.75, C:0.05, G:0.07, T:0.14
Consensus pattern (20 bp):
AAAAAAATGAAAAAAATACA
Found at i:8847539 original size:20 final size:20
Alignment explanation
Indices: 8847501--8847539 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
8847491 ATTGAAAAAA
8847501 ATGAAAAAAATACAAAAATT
1 ATGAAAAAAATACAAAAATT
*
8847521 ATGAAAAAGATACAAAAAT
1 ATGAAAAAAATACAAAAAT
8847540 GCCCTTAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.69, C:0.05, G:0.08, T:0.18
Consensus pattern (20 bp):
ATGAAAAAAATACAAAAATT
Found at i:8848438 original size:3 final size:3
Alignment explanation
Indices: 8848432--8848523 Score: 166
Period size: 3 Copynumber: 30.7 Consensus size: 3
8848422 GAAGAAATGT
* *
8848432 ATA ATA ATA ACA ATA ATA ACA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8848480 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
8848524 TTAAAATGAT
Statistics
Matches: 85, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 85 1.00
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:8849642 original size:34 final size:33
Alignment explanation
Indices: 8849577--8849654 Score: 93
Period size: 34 Copynumber: 2.3 Consensus size: 33
8849567 AGGCAATGGC
** * *
8849577 ACTTTAAAAACTCCTCTAATTAGAGGATATGAA
1 ACTTTAAAAACTTATCTAAATAAAGGATATGAA
*
8849610 ACTTTAAATAACTTATCTAAATAAAGGGTATGAA
1 ACTTTAAA-AACTTATCTAAATAAAGGATATGAA
8849644 ACTTTTAAAAA
1 AC-TTTAAAAA
8849655 ACTTCATTGA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
33 8 0.21
34 24 0.63
35 6 0.16
ACGTcount: A:0.46, C:0.12, G:0.10, T:0.32
Consensus pattern (33 bp):
ACTTTAAAAACTTATCTAAATAAAGGATATGAA
Found at i:8849739 original size:32 final size:33
Alignment explanation
Indices: 8849674--8849753 Score: 99
Period size: 32 Copynumber: 2.5 Consensus size: 33
8849664 ACTAGAAGGC
* *
8849674 AATGGAATTTGAAAGATTCCTCTAACCAGAGGT
1 AATGAAATTTGAAAGATTACTCTAACCAGAGGT
* * *
8849707 AATGAGATTTGAAATATTACTC-AACCATAGGT
1 AATGAAATTTGAAAGATTACTCTAACCAGAGGT
*
8849739 AATGAAACTTGAAAG
1 AATGAAATTTGAAAG
8849754 GTTCCTCTGG
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
32 21 0.54
33 18 0.46
ACGTcount: A:0.41, C:0.12, G:0.19, T:0.28
Consensus pattern (33 bp):
AATGAAATTTGAAAGATTACTCTAACCAGAGGT
Found at i:8859661 original size:28 final size:28
Alignment explanation
Indices: 8859629--8859685 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
8859619 TTTATCAATG
8859629 TTCATAAGATTGGCTAGCTTTTTACAAA
1 TTCATAAGATTGGCTAGCTTTTTACAAA
8859657 TTCATAAGATTGGCTAGCTTTTTACAAA
1 TTCATAAGATTGGCTAGCTTTTTACAAA
8859685 T
1 T
8859686 CCTAACTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (28 bp):
TTCATAAGATTGGCTAGCTTTTTACAAA
Found at i:8861666 original size:17 final size:19
Alignment explanation
Indices: 8861644--8861679 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
8861634 AGTTCACATA
8861644 AAAAATA-AAA-AAAATAT
1 AAAAATAGAAAGAAAATAT
8861661 AAAAATAGAAAGAAAATAT
1 AAAAATAGAAAGAAAATAT
8861680 TTTTAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.41
18 3 0.18
19 7 0.41
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.17
Consensus pattern (19 bp):
AAAAATAGAAAGAAAATAT
Found at i:8862678 original size:3 final size:3
Alignment explanation
Indices: 8862672--8862711 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
8862662 AAAAGAAATC
8862672 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
8862712 TTTAAATGAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:8863458 original size:2 final size:2
Alignment explanation
Indices: 8863451--8863483 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
8863441 TTAGCACAAA
*
8863451 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8863484 AATTGTTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8866878 original size:15 final size:14
Alignment explanation
Indices: 8866839--8866880 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 14
8866829 CCAACTTTGC
8866839 TAATTTTTAATTAA
1 TAATTTTTAATTAA
8866853 TAATTTTTAATTGAA
1 TAATTTTTAATT-AA
8866868 -AATTTTGTAATTA
1 TAATTTT-TAATTA
8866881 GAACTTTGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 19 0.73
15 7 0.27
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (14 bp):
TAATTTTTAATTAA
Found at i:8866995 original size:13 final size:12
Alignment explanation
Indices: 8866964--8867005 Score: 50
Period size: 13 Copynumber: 3.4 Consensus size: 12
8866954 CTGTTTGAAT
8866964 TTATATTATTT-A
1 TTAT-TTATTTGA
8866976 TTATTTATTTGA
1 TTATTTATTTGA
*
8866988 TGTATTTATTTGT
1 T-TATTTATTTGA
8867001 TTATT
1 TTATT
8867006 ATGAGTATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
11 6 0.22
12 10 0.37
13 11 0.41
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (12 bp):
TTATTTATTTGA
Found at i:8874165 original size:14 final size:15
Alignment explanation
Indices: 8874148--8874176 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8874138 TGAAAATTAT
8874148 TTAAA-TACCTTTTA
1 TTAAACTACCTTTTA
8874162 TTAAACTACCTTTTA
1 TTAAACTACCTTTTA
8874177 ACACCCTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.48
Consensus pattern (15 bp):
TTAAACTACCTTTTA
Found at i:8874210 original size:18 final size:17
Alignment explanation
Indices: 8874189--8874230 Score: 66
Period size: 18 Copynumber: 2.4 Consensus size: 17
8874179 ACCCTTTCTC
8874189 TTTTTCTCTTCATCATTT
1 TTTTTCTCTTCATC-TTT
8874207 TTTTTCTCTTCATCTTT
1 TTTTTCTCTTCATCTTT
*
8874224 TCTTTCT
1 TTTTTCT
8874231 TGCGCTTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 9 0.39
18 14 0.61
ACGTcount: A:0.07, C:0.24, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTTTCTCTTCATCTTT
Found at i:8877765 original size:16 final size:17
Alignment explanation
Indices: 8877746--8877847 Score: 88
Period size: 16 Copynumber: 6.2 Consensus size: 17
8877736 TTTTTTGGAC
8877746 TTTGGATTTTGA-GGAT
1 TTTGGATTTTGAGGGAT
*
8877762 TTTGGACTTTTG-GGGGT
1 TTTGGA-TTTTGAGGGAT
8877779 TTTGGATTTT-AGGGAT
1 TTTGGATTTTGAGGGAT
* * *
8877795 TTTGAATTTTTATGGG-G
1 TTTGGATTTTGA-GGGAT
*
8877812 TTTGGA-TTTAAGGGAT
1 TTTGGATTTTGAGGGAT
* *
8877828 TTTGGATTTTTAGGGGT
1 TTTGGATTTTGAGGGAT
8877845 TTT
1 TTT
8877848 AGAAACCTAT
Statistics
Matches: 70, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
15 3 0.04
16 33 0.47
17 31 0.44
18 3 0.04
ACGTcount: A:0.16, C:0.01, G:0.32, T:0.51
Consensus pattern (17 bp):
TTTGGATTTTGAGGGAT
Found at i:8877781 original size:17 final size:16
Alignment explanation
Indices: 8877746--8877847 Score: 91
Period size: 17 Copynumber: 6.2 Consensus size: 16
8877736 TTTTTTGGAC
8877746 TTTGGATTTT-GAGGAT
1 TTTGGATTTTAG-GGAT
* *
8877762 TTTGGACTTTTGGGGGT
1 TTTGGA-TTTTAGGGAT
8877779 TTTGGATTTTAGGGAT
1 TTTGGATTTTAGGGAT
* *
8877795 TTTGAATTTTTATGGG-G
1 TTTGGA-TTTTA-GGGAT
*
8877812 TTTGGATTTAAGGGAT
1 TTTGGATTTTAGGGAT
*
8877828 TTTGGATTTTTAGGGGT
1 TTTGGA-TTTTAGGGAT
8877845 TTT
1 TTT
8877848 AGAAACCTAT
Statistics
Matches: 70, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
15 3 0.04
16 29 0.41
17 34 0.49
18 4 0.06
ACGTcount: A:0.16, C:0.01, G:0.32, T:0.51
Consensus pattern (16 bp):
TTTGGATTTTAGGGAT
Found at i:8877784 original size:33 final size:33
Alignment explanation
Indices: 8877746--8877847 Score: 136
Period size: 33 Copynumber: 3.1 Consensus size: 33
8877736 TTTTTTGGAC
* *
8877746 TTTGGATTTT-GAGGATTTTGGACTTTTGGGGGT
1 TTTGGATTTTAG-GGATTTTGGATTTTTAGGGGT
*
8877779 TTTGGATTTTAGGGATTTTGAATTTTTATGGGG-
1 TTTGGATTTTAGGGATTTTGGATTTTTA-GGGGT
*
8877812 TTTGGATTTAAGGGATTTTGGATTTTTAGGGGT
1 TTTGGATTTTAGGGATTTTGGATTTTTAGGGGT
8877845 TTT
1 TTT
8877848 AGAAACCTAT
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
32 4 0.07
33 52 0.85
34 5 0.08
ACGTcount: A:0.16, C:0.01, G:0.32, T:0.51
Consensus pattern (33 bp):
TTTGGATTTTAGGGATTTTGGATTTTTAGGGGT
Found at i:8878237 original size:8 final size:8
Alignment explanation
Indices: 8878221--8878271 Score: 57
Period size: 8 Copynumber: 6.2 Consensus size: 8
8878211 ATGCATAAAT
8878221 ATAAAAAA
1 ATAAAAAA
8878229 ATAACAAAA
1 ATAA-AAAA
* *
8878238 ATAATAAT
1 ATAAAAAA
8878246 ATAAAAAA
1 ATAAAAAA
8878254 ATAAAAAA
1 ATAAAAAA
* *
8878262 TTCAAAAA
1 ATAAAAAA
8878270 AT
1 AT
8878272 TTTTTTTTTT
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
8 27 0.77
9 8 0.23
ACGTcount: A:0.76, C:0.04, G:0.00, T:0.20
Consensus pattern (8 bp):
ATAAAAAA
Found at i:8879263 original size:15 final size:15
Alignment explanation
Indices: 8879239--8879272 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8879229 CTTATTTCCA
*
8879239 TTTTGTTTTTGTTTG
1 TTTTGGTTTTGTTTG
*
8879254 TTTTGGTTTTTTTTG
1 TTTTGGTTTTGTTTG
8879269 TTTT
1 TTTT
8879273 TTGTTTGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82
Consensus pattern (15 bp):
TTTTGGTTTTGTTTG
Found at i:8879273 original size:16 final size:15
Alignment explanation
Indices: 8879239--8879286 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
8879229 CTTATTTCCA
8879239 TTTTGTTTTTGTTTGT
1 TTTTGTTTTT-TTTGT
*
8879255 TTTGGTTTTTTTTGTT
1 TTTTGTTTTTTTTG-T
*
8879271 TTTTGTTTGTTTTGT
1 TTTTGTTTTTTTTGT
8879286 T
1 T
8879287 AAATATTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 6 0.21
16 22 0.79
ACGTcount: A:0.00, C:0.00, G:0.19, T:0.81
Consensus pattern (15 bp):
TTTTGTTTTTTTTGT
Found at i:8879283 original size:10 final size:10
Alignment explanation
Indices: 8879240--8879282 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
8879230 TTATTTCCAT
8879240 TTTGTTTTTG
1 TTTGTTTTTG
*
8879250 TTTGTTTTGG
1 TTTGTTTTTG
8879260 TTT-TTTTTG
1 TTTGTTTTTG
*
8879269 TTTTTTGTTTG
1 TTTGTT-TTTG
8879280 TTT
1 TTT
8879283 TGTTAAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
9 8 0.28
10 14 0.48
11 7 0.24
ACGTcount: A:0.00, C:0.00, G:0.19, T:0.81
Consensus pattern (10 bp):
TTTGTTTTTG
Found at i:8879545 original size:49 final size:47
Alignment explanation
Indices: 8879429--8879611 Score: 251
Period size: 47 Copynumber: 3.9 Consensus size: 47
8879419 TAAATTCTCT
* *
8879429 TGGAAAAACTCCTCT-AGCAGAGGCTCAACAACTTTAAAATCTCATC
1 TGGAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAATCTCATC
* * * *
8879475 TGAAAAAGCTCCTCTCAACAGAGGATCCACAACTTTAAAATTCTCACC
1 TGGAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAA-TCTCATC
*
8879523 TTGGAAAAGCTCTTCTCAACAGAGGCTCAACAACTTTAAAATCTCATC
1 -TGGAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAATCTCATC
* * *
8879571 TGGAAAAGCTCATCTCAACAGAAGCTCCACAACTTTAAAAT
1 TGGAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAAT
8879612 TTTCCTCTCA
Statistics
Matches: 120, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
46 13 0.11
47 59 0.49
48 12 0.10
49 36 0.30
ACGTcount: A:0.38, C:0.26, G:0.12, T:0.24
Consensus pattern (47 bp):
TGGAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAATCTCATC
Found at i:8879579 original size:96 final size:95
Alignment explanation
Indices: 8879427--8879748 Score: 345
Period size: 81 Copynumber: 3.5 Consensus size: 95
8879417 AATAAATTCT
* *
8879427 CTTGGAAAAACTCCTCTAGCAGAGGCTCAACAACTTTAAAATCTCATCTGAAAAAGCTCCTCTCA
1 CTTGGAAAAACTCCTCTAACAGAGGCTCAACAACTTTAAAATCTCATCTGAAAAAGCTCATCTCA
*
8879492 ACAGAGGATCCACAACTTTAAAATTCTCAC
66 ACAGAAGATCCACAACTTTAAAATTCTCAC
* * *
8879522 CTTGGAAAAGCTCTTCTCAACAGAGGCTCAACAACTTTAAAATCTCATCTGGAAAAGCTCATCTC
1 CTTGGAAAAACTCCTCT-AACAGAGGCTCAACAACTTTAAAATCTCATCTGAAAAAGCTCATCTC
*
8879587 AACAGAAGCTCCACAACTTTAAAA-T-T---
65 AACAGAAGATCCACAACTTTAAAATTCTCAC
* * *
8879613 -TT------CCT-CTC-AATAGAGGCTCAACAACTTTAAAATCTCATATGAAAAAGCTCATCTCA
1 CTTGGAAAAACTCCTCTAACAGAGGCTCAACAACTTTAAAATCTCATCTGAAAAAGCTCATCTCA
* * * * *
8879669 ACAGAGGCTCCACAACTTTACAA-GCTCAT
66 ACAGAAGATCCACAACTTTAAAATTCTCAC
*
8879698 C-T-GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTCTCATCTG
1 CTTGGAAAAA-CTCCTCT-AACAGAGGCTCAACAACTTTAAAA-TCTCATCTG
8879749 TTTTCAAATT
Statistics
Matches: 192, Mismatches: 19, Indels: 32
0.79 0.08 0.13
Matches are distributed among these distances:
81 66 0.34
82 1 0.01
83 2 0.01
84 2 0.01
85 1 0.01
90 2 0.01
91 2 0.01
92 3 0.02
94 23 0.12
95 24 0.12
96 66 0.34
ACGTcount: A:0.36, C:0.27, G:0.11, T:0.25
Consensus pattern (95 bp):
CTTGGAAAAACTCCTCTAACAGAGGCTCAACAACTTTAAAATCTCATCTGAAAAAGCTCATCTCA
ACAGAAGATCCACAACTTTAAAATTCTCAC
Found at i:8879675 original size:47 final size:47
Alignment explanation
Indices: 8879617--8879745 Score: 195
Period size: 47 Copynumber: 2.7 Consensus size: 47
8879607 AAAATTTTCC
* *
8879617 TCTCAATAGAGGCTCAACAACTTTAAAATCTCATATGAAAAAGCTCA
1 TCTCAACAGAGGCTCCACAACTTTAAAATCTCATATGAAAAAGCTCA
* * * *
8879664 TCTCAACAGAGGCTCCACAACTTTACAAGCTCATCTGAAAAAGCTCC
1 TCTCAACAGAGGCTCCACAACTTTAAAATCTCATATGAAAAAGCTCA
8879711 TCTCAACAGAGGCTCCACAACTTTAAAATTCTCAT
1 TCTCAACAGAGGCTCCACAACTTTAAAA-TCTCAT
8879746 CTGTTTTCAA
Statistics
Matches: 73, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
47 68 0.93
48 5 0.07
ACGTcount: A:0.37, C:0.27, G:0.11, T:0.25
Consensus pattern (47 bp):
TCTCAACAGAGGCTCCACAACTTTAAAATCTCATATGAAAAAGCTCA
Found at i:8879684 original size:128 final size:129
Alignment explanation
Indices: 8879484--8879740 Score: 383
Period size: 128 Copynumber: 2.0 Consensus size: 129
8879474 CTGAAAAAGC
* * *
8879484 TCCTCTCAACAGAGGATCCACAACTTTAAAATTCTCACCTTGGAAAAGCTCTTCTCAACAGAGGC
1 TCCTCTCAACAGAGGATCAACAACTTTAAAATTCTCA-CTTGAAAAAGCTCATCTCAACAGAGGC
* *
8879549 TCAACAACTTTAAAATCTCATCTGGAAAAGCTCATCTCAACAGAAGCTCCACAACTTTAAAATTT
65 TCAACAACTTTAAAAGCTCATCTGAAAAAGCTCATCTCAACAGAAGCTCCACAACTTTAAAATTT
* *
8879614 TCCTCTCAATAGAGGCTCAACAACTTTAAAA-TCTCA-TATGAAAAAGCTCATCTCAACAGAGGC
1 TCCTCTCAACAGAGGATCAACAACTTTAAAATTCTCACT-TGAAAAAGCTCATCTCAACAGAGGC
* * * *
8879677 TCCACAACTTTACAAGCTCATCTGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAATT
65 TCAACAACTTTAAAAGCTCATCTGAAAAAGCTCATCTCAACAGAAGCTCCACAACTTTAAAATT
8879741 CTCATCTGTT
Statistics
Matches: 115, Mismatches: 11, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
127 1 0.01
128 81 0.70
129 5 0.04
130 28 0.24
ACGTcount: A:0.37, C:0.27, G:0.11, T:0.25
Consensus pattern (129 bp):
TCCTCTCAACAGAGGATCAACAACTTTAAAATTCTCACTTGAAAAAGCTCATCTCAACAGAGGCT
CAACAACTTTAAAAGCTCATCTGAAAAAGCTCATCTCAACAGAAGCTCCACAACTTTAAAATTT
Found at i:8883789 original size:19 final size:18
Alignment explanation
Indices: 8883767--8883838 Score: 65
Period size: 18 Copynumber: 3.9 Consensus size: 18
8883757 ATAAAAAATT
*
8883767 TAAAAAATTTTAAACATTC
1 TAAAAAATTTTAAA-ACTC
*
8883786 TAAAATATTTTAAAAACTC
1 TAAAAAATTTT-AAAACTC
* * *
8883805 T-AACAATTGTAAAAGTC
1 TAAAAAATTTTAAAACTC
*
8883822 TAAAAATTTTTAAAACT
1 TAAAAAATTTTAAAACT
8883839 TTTTAAATTT
Statistics
Matches: 41, Mismatches: 10, Indels: 5
0.73 0.18 0.09
Matches are distributed among these distances:
17 7 0.17
18 17 0.41
19 14 0.34
20 3 0.07
ACGTcount: A:0.51, C:0.10, G:0.03, T:0.36
Consensus pattern (18 bp):
TAAAAAATTTTAAAACTC
Found at i:8883967 original size:19 final size:18
Alignment explanation
Indices: 8883903--8883966 Score: 94
Period size: 18 Copynumber: 3.6 Consensus size: 18
8883893 TTTTTTTTCA
*
8883903 TTCTATAAAATTTTAACAT
1 TTCTAAAAAATTTTAA-AT
8883922 TTCTAAAAAATTTTAAAT
1 TTCTAAAAAATTTTAAAT
*
8883940 TTCTAAAAACTTTTAAAT
1 TTCTAAAAAATTTTAAAT
8883958 TT-TAAAAAA
1 TTCTAAAAAA
8883967 ATATTCAAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
17 6 0.14
18 21 0.50
19 15 0.36
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (18 bp):
TTCTAAAAAATTTTAAAT
Found at i:8884047 original size:30 final size:29
Alignment explanation
Indices: 8883978--8884049 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 29
8883968 TATTCAAAAC
* *
8883978 ATTTTTAAAAAATATTAATAGTTTTAGAA
1 ATTTTTAAAAAATATTAATAATTTTACAA
* *
8884007 AGTTTCTAAAAAATATTTAA-AATTTTTCAA
1 A-TTTTTAAAAAATA-TTAATAATTTTACAA
8884037 ATTTTATAAAAAA
1 ATTTT-TAAAAAA
8884050 AAAAATTTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
29 4 0.11
30 27 0.77
31 4 0.11
ACGTcount: A:0.50, C:0.03, G:0.04, T:0.43
Consensus pattern (29 bp):
ATTTTTAAAAAATATTAATAATTTTACAA
Found at i:8884330 original size:7 final size:7
Alignment explanation
Indices: 8884311--8884344 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
8884301 TTAAAGTTTA
8884311 AAAAATT
1 AAAAATT
8884318 ACAAAATT
1 A-AAAATT
*
8884326 AAAAACT
1 AAAAATT
8884333 AAAAATT
1 AAAAATT
8884340 AAAAA
1 AAAAA
8884345 AATTATAAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 17 0.71
8 7 0.29
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.21
Consensus pattern (7 bp):
AAAAATT
Found at i:8884394 original size:18 final size:19
Alignment explanation
Indices: 8884373--8884420 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
8884363 TTTTTCAAAA
*
8884373 TTTAAAAAATT-ATAAATT
1 TTTAAAAAATTAAAAAATT
8884391 TTTAAAAAATTCAAAAAATT
1 TTTAAAAAATT-AAAAAATT
*
8884411 TTTGAAAAAT
1 TTTAAAAAAT
8884421 CAAATATCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 11 0.42
20 15 0.58
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (19 bp):
TTTAAAAAATTAAAAAATT
Found at i:8884860 original size:21 final size:21
Alignment explanation
Indices: 8884836--8884878 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
8884826 TTTTTTAGAA
8884836 TTTTTTTAATTTT-TAAAGTTT
1 TTTTTTTAATTTTATAAA-TTT
8884857 TTTTTTTAATTTTATAAATTT
1 TTTTTTTAATTTTATAAATTT
8884878 T
1 T
8884879 AAAAAATGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (21 bp):
TTTTTTTAATTTTATAAATTT
Found at i:8884861 original size:30 final size:30
Alignment explanation
Indices: 8884804--8884859 Score: 98
Period size: 28 Copynumber: 1.9 Consensus size: 30
8884794 AAATATCCTT
8884804 AATTTTTTTAATTATTTTAAAGTTTTTTAG
1 AATTTTTTTAATTATTTTAAAGTTTTTTAG
8884834 AATTTTTTTAA-T-TTTTAAAGTTTTTT
1 AATTTTTTTAATTATTTTAAAGTTTTTT
8884860 TTTTAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
28 14 0.54
29 1 0.04
30 11 0.42
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (30 bp):
AATTTTTTTAATTATTTTAAAGTTTTTTAG
Found at i:8884869 original size:9 final size:9
Alignment explanation
Indices: 8884802--8884849 Score: 51
Period size: 10 Copynumber: 5.0 Consensus size: 9
8884792 TTAAATATCC
8884802 TTAATTTTT
1 TTAATTTTT
8884811 TTAATTATTT
1 TTAATT-TTT
*
8884821 TAAAGTTTTT
1 TTAA-TTTTT
*
8884831 TAGAATTTTT
1 T-TAATTTTT
8884841 TTAATTTTT
1 TTAATTTTT
8884850 AAAGTTTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 13 0.39
10 16 0.48
11 4 0.12
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (9 bp):
TTAATTTTT
Found at i:8885399 original size:10 final size:10
Alignment explanation
Indices: 8885330--8885384 Score: 69
Period size: 10 Copynumber: 5.6 Consensus size: 10
8885320 ACATTCAAAG
8885330 AAAAATTC-A
1 AAAAATTCTA
*
8885339 AATAA-TCTA
1 AAAAATTCTA
8885348 AAAAATTCTA
1 AAAAATTCTA
8885358 AAACAATTCTA
1 AAA-AATTCTA
*
8885369 AAAAATTTTA
1 AAAAATTCTA
8885379 AAAAAT
1 AAAAAT
8885385 GAAAATTATA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
8 2 0.05
9 9 0.22
10 19 0.47
11 10 0.25
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.29
Consensus pattern (10 bp):
AAAAATTCTA
Found at i:8885478 original size:28 final size:28
Alignment explanation
Indices: 8885456--8885518 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
8885446 GTTAAGAAAT
8885456 TCAAAAAAATCACAAAATTTTAATAAAAA
1 TCAAAAAAATCA-AAAATTTTAATAAAAA
* * *
8885485 TCCAAAAAATTAAAAATTTTAACAAAAA
1 TCAAAAAAATCAAAAATTTTAATAAAAA
8885513 T-AAAAA
1 TCAAAAA
8885519 TTTCATAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 4 0.13
28 16 0.53
29 10 0.33
ACGTcount: A:0.67, C:0.10, G:0.00, T:0.24
Consensus pattern (28 bp):
TCAAAAAAATCAAAAATTTTAATAAAAA
Found at i:8885497 original size:19 final size:20
Alignment explanation
Indices: 8885460--8885497 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
8885450 AGAAATTCAA
**
8885460 AAAAATCACAAAATTTTAAT
1 AAAAATCACAAAAAATTAAT
8885480 AAAAATC-CAAAAAATTAA
1 AAAAATCACAAAAAATTAA
8885498 AAATTTTAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 9 0.56
20 7 0.44
ACGTcount: A:0.66, C:0.11, G:0.00, T:0.24
Consensus pattern (20 bp):
AAAAATCACAAAAAATTAAT
Found at i:8885687 original size:11 final size:10
Alignment explanation
Indices: 8885653--8885711 Score: 61
Period size: 9 Copynumber: 6.0 Consensus size: 10
8885643 CTTTAAATTT
8885653 TAAATTTTTA
1 TAAATTTTTA
*
8885663 TATA-TTTT-
1 TAAATTTTTA
*
8885671 TGAATTTTTCA
1 TAAATTTTT-A
8885682 TAAATTTTTA
1 TAAATTTTTA
8885692 -AAATTTTTA
1 TAAATTTTTA
8885701 TTAAATTTTTA
1 -TAAATTTTTA
8885712 ATTGTTTTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
8 2 0.05
9 17 0.43
10 4 0.10
11 17 0.43
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (10 bp):
TAAATTTTTA
Found at i:8885693 original size:8 final size:8
Alignment explanation
Indices: 8885634--8885784 Score: 62
Period size: 8 Copynumber: 17.6 Consensus size: 8
8885624 AGTTTTCATT
*
8885634 TTTTTTAA
1 TTTTTAAA
*
8885642 TCTTTAAA
1 TTTTTAAA
8885650 -TTTTAAA
1 TTTTTAAA
8885657 TTTTTATATA
1 TTTTTA-A-A
*
8885667 TTTTTGAAT
1 TTTTT-AAA
8885676 TTTTCATAAA
1 TTTT--TAAA
8885686 TTTTTAAAA
1 TTTTT-AAA
8885695 TTTTTATTAAA
1 --TTT-TTAAA
8885706 TTTTT-AA
1 TTTTTAAA
8885713 TTGTTT---
1 TT-TTTAAA
*
8885719 TTTTTAAT
1 TTTTTAAA
*
8885727 TTTTTAAT
1 TTTTTAAA
8885735 TTTTGTAAA
1 TTTT-TAAA
8885744 TTTTTTAGAA
1 -TTTTTA-AA
*
8885754 TGTTTCAAAA
1 T-TTT-TAAA
8885764 TTTTT-AA
1 TTTTTAAA
8885771 TTTTTAGAA
1 TTTTTA-AA
8885780 TTTTT
1 TTTTT
8885785 TGAGAAAATT
Statistics
Matches: 114, Mismatches: 8, Indels: 41
0.70 0.05 0.25
Matches are distributed among these distances:
5 3 0.03
6 2 0.02
7 17 0.15
8 29 0.25
9 27 0.24
10 25 0.22
11 9 0.08
12 2 0.02
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.64
Consensus pattern (8 bp):
TTTTTAAA
Found at i:8885695 original size:9 final size:9
Alignment explanation
Indices: 8885650--8885784 Score: 53
Period size: 9 Copynumber: 14.4 Consensus size: 9
8885640 AATCTTTAAA
8885650 TTTT-AAAT
1 TTTTAAAAT
*
8885658 TTTTATATAT
1 TTTTA-AAAT
*
8885668 TTTT-GAAT
1 TTTTAAAAT
8885676 TTTTCATAAAT
1 TTTT-A-AAAT
8885687 TTTTAAAAT
1 TTTTAAAAT
8885696 TTTTATTAAAT
1 TTTTA--AAAT
**
8885707 TTTTAATTGTT
1 TTTTAA--AAT
**
8885718 TTTTTTAAT
1 TTTTAAAAT
* *
8885727 TTTTTAATT
1 TTTTAAAAT
*
8885736 TTTGTAAATT
1 TTT-TAAAAT
*
8885746 TTTTAGAAT
1 TTTTAAAAT
*
8885755 GTTTCAAAAT
1 -TTTTAAAAT
8885765 TTTT--AAT
1 TTTTAAAAT
*
8885772 TTTTAGAAT
1 TTTTAAAAT
8885781 TTTT
1 TTTT
8885785 TGAGAAAATT
Statistics
Matches: 96, Mismatches: 18, Indels: 25
0.69 0.13 0.18
Matches are distributed among these distances:
7 7 0.07
8 10 0.10
9 35 0.36
10 23 0.24
11 21 0.22
ACGTcount: A:0.30, C:0.01, G:0.04, T:0.64
Consensus pattern (9 bp):
TTTTAAAAT
Found at i:8885696 original size:20 final size:18
Alignment explanation
Indices: 8885646--8885776 Score: 97
Period size: 20 Copynumber: 7.0 Consensus size: 18
8885636 TTTTAATCTT
8885646 TAAA-TTTTAAATTTTTA
1 TAAATTTTTAAATTTTTA
* *
8885663 TATATTTTTGAATTTTTCA
1 TAAATTTTTAAATTTTT-A
8885682 TAAATTTTTAAAATTTTTA
1 TAAATTTTT-AAATTTTTA
* *
8885701 TTAAATTTTTAATTGTTTTTT
1 -TAAATTTTTAA--ATTTTTA
* * *
8885722 TTAATTTTTTAATTTTTG
1 TAAATTTTTAAATTTTTA
*
8885740 TAAATTTTTTAGAATGTTTCA
1 TAAA-TTTTTA-AAT-TTTTA
8885761 -AAATTTTT-AATTTTTA
1 TAAATTTTTAAATTTTTA
8885777 GAATTTTTTG
Statistics
Matches: 90, Mismatches: 15, Indels: 19
0.73 0.12 0.15
Matches are distributed among these distances:
16 4 0.04
17 6 0.07
18 19 0.21
19 22 0.24
20 31 0.34
21 8 0.09
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.63
Consensus pattern (18 bp):
TAAATTTTTAAATTTTTA
Found at i:8885928 original size:16 final size:17
Alignment explanation
Indices: 8885892--8885929 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
8885882 TTTAAGAAAA
8885892 TTTTATTTTTATTATAC
1 TTTTATTTTTATTATAC
8885909 TTTTCATTTTT-TTA-AC
1 TTTT-ATTTTTATTATAC
8885925 TTTTA
1 TTTTA
8885930 GAATTTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 1 0.05
16 6 0.30
17 7 0.35
18 6 0.30
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTATTTTTATTATAC
Found at i:8885993 original size:32 final size:32
Alignment explanation
Indices: 8885959--8886021 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
8885949 ATTTTTTATT
* * *
8885959 AAATTATTAAGATTTTTTGAATTTTCAAATTTA
1 AAATTATTAA-AATTTTAGAATTTTAAAATTTA
*
8885992 AAATTTTTAAAATTTTAGAATTTTAAAATT
1 AAATTATTAAAATTTTAGAATTTTAAAATT
8886022 CTTTTGAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
32 17 0.65
33 9 0.35
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.51
Consensus pattern (32 bp):
AAATTATTAAAATTTTAGAATTTTAAAATTTA
Found at i:8885997 original size:24 final size:26
Alignment explanation
Indices: 8885960--8886035 Score: 77
Period size: 24 Copynumber: 3.0 Consensus size: 26
8885950 TTTTTTATTA
*
8885960 AATTATTAAGATTTTTTGAATTTTCA-
1 AATT-TTAAAATTTTTTGAATTTTCAG
**
8885986 AA-TTTAAAATTTTTAAAATTTT-AG
1 AATTTTAAAATTTTTTGAATTTTCAG
*
8886010 AATTTTAAAATTCTTTTGAAATTTCA
1 AATTTTAAAATT-TTTTGAATTTTCA
8886036 TTTAATATTG
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
23 1 0.03
24 18 0.45
25 10 0.25
26 10 0.25
27 1 0.03
ACGTcount: A:0.39, C:0.04, G:0.05, T:0.51
Consensus pattern (26 bp):
AATTTTAAAATTTTTTGAATTTTCAG
Found at i:8886000 original size:9 final size:8
Alignment explanation
Indices: 8885978--8886021 Score: 54
Period size: 8 Copynumber: 5.5 Consensus size: 8
8885968 AGATTTTTTG
*
8885978 AATTTTCA
1 AATTTTAA
8885986 AA-TTTAA
1 AATTTTAA
8885993 AATTTTTAA
1 AA-TTTTAA
*
8886002 AATTTTAG
1 AATTTTAA
8886010 AATTTTAA
1 AATTTTAA
8886018 AATT
1 AATT
8886022 CTTTTGAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
7 6 0.19
8 18 0.58
9 7 0.23
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (8 bp):
AATTTTAA
Found at i:8888071 original size:20 final size:19
Alignment explanation
Indices: 8888024--8888074 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 19
8888014 AATTATATAA
8888024 ATAAAAATAGTTTTTTAAAT
1 ATAAAAATA-TTTTTTAAAT
8888044 -TGATAAAATATTTTTTAATAT
1 AT-A-AAAATATTTTTTAA-AT
8888065 ATAAAAATAT
1 ATAAAAATAT
8888075 AAATATTAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 16 0.59
21 9 0.33
22 1 0.04
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (19 bp):
ATAAAAATATTTTTTAAAT
Found at i:8888484 original size:20 final size:19
Alignment explanation
Indices: 8888459--8888520 Score: 63
Period size: 21 Copynumber: 3.2 Consensus size: 19
8888449 TTTTATAAAA
8888459 TTTTAAAAAGTATGAAATAT
1 TTTTAAAAA-TATGAAATAT
* *
8888479 TTTTAAAAAATTATAAAAAAT
1 TTTT-AAAAA-TATGAAATAT
*
8888500 TTTTAAAAA-ACGAAATAT
1 TTTTAAAAATATGAAATAT
8888518 TTT
1 TTT
8888521 ACAAAACTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
18 9 0.26
20 9 0.26
21 17 0.49
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.40
Consensus pattern (19 bp):
TTTTAAAAATATGAAATAT
Found at i:8888501 original size:21 final size:21
Alignment explanation
Indices: 8888455--8888509 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
8888445 TAACTTTTAT
*
8888455 AAAA-TTTT-AAAAAGTATGA
1 AAAATTTTTAAAAAAGTATAA
* *
8888474 AATATTTTTAAAAAATTATAA
1 AAAATTTTTAAAAAAGTATAA
8888495 AAAATTTTTAAAAAA
1 AAAATTTTTAAAAAA
8888510 CGAAATATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 3 0.10
20 4 0.13
21 23 0.77
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (21 bp):
AAAATTTTTAAAAAAGTATAA
Found at i:8888506 original size:11 final size:11
Alignment explanation
Indices: 8888477--8888509 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
8888467 AGTATGAAAT
8888477 ATTTTTAAAAA
1 ATTTTTAAAAA
*
8888488 A-TTATAAAAA
1 ATTTTTAAAAA
8888498 ATTTTTAAAAA
1 ATTTTTAAAAA
8888509 A
1 A
8888510 CGAAATATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (11 bp):
ATTTTTAAAAA
Found at i:8888515 original size:39 final size:38
Alignment explanation
Indices: 8888455--8888537 Score: 98
Period size: 38 Copynumber: 2.2 Consensus size: 38
8888445 TAACTTTTAT
* *
8888455 AAAA-TTTTAAAAAGTATGAAATATTTTTAAAAAATTATAA
1 AAAATTTTTAAAAAG-ACGAAATA-TTTTAAAAAACTA-AA
*
8888495 AAAATTTTTAAAAA-ACGAAATATTTTACAAAACTAAA
1 AAAATTTTTAAAAAGACGAAATATTTTAAAAAACTAAA
8888532 AAAATT
1 AAAATT
8888538 ATGAACACAT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
37 8 0.21
38 11 0.28
39 7 0.18
40 4 0.10
41 9 0.23
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.34
Consensus pattern (38 bp):
AAAATTTTTAAAAAGACGAAATATTTTAAAAAACTAAA
Found at i:8888721 original size:10 final size:10
Alignment explanation
Indices: 8888698--8888734 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
8888688 GGAAAAAATA
8888698 AAAAATTTCT
1 AAAAATTTCT
*
8888708 -AAAATTTTT
1 AAAAATTTCT
8888717 AAAAATTTCT
1 AAAAATTTCT
8888727 AAAAATTT
1 AAAAATTT
8888735 TTCATTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 8 0.33
10 16 0.67
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.43
Consensus pattern (10 bp):
AAAAATTTCT
Found at i:8888722 original size:19 final size:20
Alignment explanation
Indices: 8888698--8888736 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
8888688 GGAAAAAATA
8888698 AAAAATTTCT-AAAATTTTT
1 AAAAATTTCTAAAAATTTTT
8888717 AAAAATTTCTAAAAATTTTT
1 AAAAATTTCTAAAAATTTTT
8888737 CATTTTTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (20 bp):
AAAAATTTCTAAAAATTTTT
Found at i:8888809 original size:12 final size:12
Alignment explanation
Indices: 8888763--8888818 Score: 58
Period size: 13 Copynumber: 4.4 Consensus size: 12
8888753 CGATTTTAAC
*
8888763 TTTTTATATATTT
1 TTTTTA-ATTTTT
*
8888776 TATTTAATTTTT
1 TTTTTAATTTTT
*
8888788 TTTTGAAATTTTT
1 TTTT-TAATTTTT
8888801 TTTTTAATTTTT
1 TTTTTAATTTTT
8888813 ATTTTT
1 -TTTTT
8888819 TAGAAAATTT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
12 15 0.42
13 21 0.58
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (12 bp):
TTTTTAATTTTT
Found at i:8888818 original size:27 final size:26
Alignment explanation
Indices: 8888783--8888840 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
8888773 TTTTATTTAA
8888783 TTTTTTTTT-GAAATTTTTTTTTTAATT
1 TTTTTTTTTAGAAA--TTTTTTTTAATT
*
8888810 TTTATTTTTTAGAAAATTTTTTTAATT
1 TTT-TTTTTTAGAAATTTTTTTTAATT
8888837 TTTT
1 TTTT
8888841 ATAATTATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 1 0.04
27 17 0.61
28 6 0.21
29 4 0.14
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.74
Consensus pattern (26 bp):
TTTTTTTTTAGAAATTTTTTTTAATT
Found at i:8888838 original size:9 final size:9
Alignment explanation
Indices: 8888824--8888917 Score: 50
Period size: 10 Copynumber: 10.0 Consensus size: 9
8888814 TTTTTTAGAA
8888824 AATTTTTTT
1 AATTTTTTT
8888833 AATTTTTTAT
1 AATTTTTT-T
*
8888843 AATTATTTT
1 AATTTTTTT
*
8888852 AGA-ATTTTT
1 A-ATTTTTTT
**
8888861 -ATTTTTCAA
1 AATTTTT-TT
* *
8888870 AAATTTTTA
1 AATTTTTTT
8888879 AATTTTTTT
1 AATTTTTTT
8888888 CAGAATTTTTTT
1 ---AATTTTTTT
8888900 AAATTTTTTT
1 -AATTTTTTT
8888910 -ATTTTTTT
1 AATTTTTTT
8888918 CAAAAAATTT
Statistics
Matches: 66, Mismatches: 11, Indels: 17
0.70 0.12 0.18
Matches are distributed among these distances:
7 1 0.02
8 11 0.17
9 22 0.33
10 23 0.35
12 9 0.14
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (9 bp):
AATTTTTTT
Found at i:8888917 original size:10 final size:10
Alignment explanation
Indices: 8888873--8888910 Score: 58
Period size: 10 Copynumber: 3.6 Consensus size: 10
8888863 TTTTCAAAAA
8888873 TTTTTAAATT
1 TTTTTAAATT
8888883 TTTTTCAGAATT
1 TTTTT-A-AATT
8888895 TTTTTAAATT
1 TTTTTAAATT
8888905 TTTTTA
1 TTTTTA
8888911 TTTTTTTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 15 0.58
11 2 0.08
12 9 0.35
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.68
Consensus pattern (10 bp):
TTTTTAAATT
Found at i:8888934 original size:30 final size:30
Alignment explanation
Indices: 8888869--8888936 Score: 82
Period size: 30 Copynumber: 2.3 Consensus size: 30
8888859 TTATTTTTCA
* **
8888869 AAAATTTTTAAATTTTTTTCAGAATTTTTT
1 AAAATTTTTAAATTTTTTTCAAAAAATTTT
* **
8888899 TAAATTTTTTTATTTTTTTCAAAAAATTTT
1 AAAATTTTTAAATTTTTTTCAAAAAATTTT
8888929 AAAATTTT
1 AAAATTTT
8888937 AGTAATTTTG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.60
Consensus pattern (30 bp):
AAAATTTTTAAATTTTTTTCAAAAAATTTT
Found at i:8888998 original size:17 final size:16
Alignment explanation
Indices: 8888972--8889025 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 16
8888962 TTGTGATTTT
*
8888972 TTTTAATTTTAAGAAAA
1 TTTTATTTTTAAG-AAA
**
8888989 TTTTATTTTTATTAAA
1 TTTTATTTTTAAGAAA
*
8889005 TTTTGATTTTTATGAAA
1 TTTT-ATTTTTAAGAAA
8889022 TTTT
1 TTTT
8889026 GAAATATATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
16 7 0.22
17 25 0.78
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (16 bp):
TTTTATTTTTAAGAAA
Found at i:8889026 original size:17 final size:17
Alignment explanation
Indices: 8888986--8889027 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
8888976 AATTTTAAGA
*
8888986 AAATTTT-ATTTTTATT
1 AAATTTTGATTTTTATG
8889002 AAATTTTGATTTTTATG
1 AAATTTTGATTTTTATG
8889019 AAATTTTGA
1 AAATTTTGA
8889028 AATATATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 7 0.29
17 17 0.71
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (17 bp):
AAATTTTGATTTTTATG
Found at i:8890058 original size:16 final size:17
Alignment explanation
Indices: 8890037--8890068 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
8890027 AAGCGTCCAA
8890037 AAAATATTTTT-TTTTC
1 AAAATATTTTTATTTTC
8890053 AAAATATTTTTATTTT
1 AAAATATTTTTATTTT
8890069 TAATTTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (17 bp):
AAAATATTTTTATTTTC
Found at i:8898150 original size:2 final size:2
Alignment explanation
Indices: 8898143--8898175 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
8898133 CTTATAAATA
*
8898143 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8898176 GAGAGAGAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:8906329 original size:10 final size:10
Alignment explanation
Indices: 8906314--8906357 Score: 70
Period size: 10 Copynumber: 4.3 Consensus size: 10
8906304 GAGGAAAAAG
8906314 AAAAAAAGAA
1 AAAAAAAGAA
8906324 AAAAAAAGAA
1 AAAAAAAGAA
*
8906334 AAAGAAAGAA
1 AAAAAAAGAA
8906344 AAAAAAAGAGA
1 AAAAAAAGA-A
8906355 AAA
1 AAA
8906358 TTGGTTTTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
10 27 0.87
11 4 0.13
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:8906335 original size:16 final size:15
Alignment explanation
Indices: 8906308--8906357 Score: 64
Period size: 16 Copynumber: 3.2 Consensus size: 15
8906298 TAACGAGAGG
*
8906308 AAAAAGAAAAAAAGA
1 AAAAAAAAAAAAAGA
8906323 AAAAAAAAGAAAAAGA
1 AAAAAAAA-AAAAAGA
*
8906339 AAGAAAAAAAAAGAGA
1 AA-AAAAAAAAAAAGA
8906355 AAA
1 AAA
8906358 TTGGTTTTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
15 8 0.26
16 17 0.55
17 6 0.19
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAAGA
Found at i:8906343 original size:20 final size:19
Alignment explanation
Indices: 8906308--8906357 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 19
8906298 TAACGAGAGG
8906308 AAAAAG-AAAAAAAGAAAA
1 AAAAAGAAAAAAAAGAAAA
8906326 AAAAAGAAAAAGAAAGAAAA
1 AAAAAGAAAAA-AAAGAAAA
8906346 AAAAAGAGAAAA
1 AAAAAGA-AAAA
8906358 TTGGTTTTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
18 6 0.21
19 4 0.14
20 15 0.52
21 4 0.14
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (19 bp):
AAAAAGAAAAAAAAGAAAA
Found at i:8906398 original size:15 final size:14
Alignment explanation
Indices: 8906373--8906431 Score: 84
Period size: 14 Copynumber: 4.1 Consensus size: 14
8906363 TTTGACATCT
8906373 AAGAAGGAAAAAAAA
1 AAGAA-GAAAAAAAA
*
8906388 TAGAAGAAAAAAAA
1 AAGAAGAAAAAAAA
8906402 AAG-AGAAAAAGAAA
1 AAGAAGAAAAA-AAA
8906416 AAGAAGAAAAAAAA
1 AAGAAGAAAAAAAA
8906430 AA
1 AA
8906432 AGAGGAGAGG
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
13 7 0.17
14 22 0.55
15 11 0.28
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (14 bp):
AAGAAGAAAAAAAA
Found at i:8907533 original size:15 final size:15
Alignment explanation
Indices: 8907513--8907558 Score: 65
Period size: 15 Copynumber: 3.0 Consensus size: 15
8907503 AAAACTCCTT
8907513 AATCCTAAAATCTAA
1 AATCCTAAAATCTAA
*
8907528 AATCCTAAAACTCTCA
1 AATCCTAAAA-TCTAA
*
8907544 AATCCTGAAATCTAA
1 AATCCTAAAATCTAA
8907559 CTCCTAACCC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
15 14 0.52
16 13 0.48
ACGTcount: A:0.48, C:0.24, G:0.02, T:0.26
Consensus pattern (15 bp):
AATCCTAAAATCTAA
Found at i:8907548 original size:16 final size:16
Alignment explanation
Indices: 8907486--8907549 Score: 62
Period size: 16 Copynumber: 4.1 Consensus size: 16
8907476 AGAAAAAATT
*
8907486 TAAAAC-CTCAAAACC
1 TAAAACTCTCAAATCC
*
8907501 TTAAAACTC-CTTAATCC
1 -TAAAACTCTC-AAATCC
*
8907518 TAAAA-TCTAAAATCC
1 TAAAACTCTCAAATCC
8907533 TAAAACTCTCAAATCC
1 TAAAACTCTCAAATCC
8907549 T
1 T
8907550 GAAATCTAAC
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
15 12 0.31
16 22 0.56
17 5 0.13
ACGTcount: A:0.45, C:0.28, G:0.00, T:0.27
Consensus pattern (16 bp):
TAAAACTCTCAAATCC
Found at i:8907605 original size:15 final size:16
Alignment explanation
Indices: 8907567--8907607 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
8907557 AACTCCTAAC
8907567 CCCTAAAATTGTGAAA
1 CCCTAAAATTGTGAAA
*
8907583 CCCCAAAATCT-TG-AA
1 CCCTAAAAT-TGTGAAA
8907598 CCCTAAAATT
1 CCCTAAAATT
8907608 AAAAAGCCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 1 0.05
15 10 0.45
16 10 0.45
17 1 0.05
ACGTcount: A:0.41, C:0.27, G:0.07, T:0.24
Consensus pattern (16 bp):
CCCTAAAATTGTGAAA
Found at i:8909319 original size:27 final size:27
Alignment explanation
Indices: 8909281--8909333 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
8909271 TGAAGATCGA
8909281 GATGCCTTACTA-GTCTATAATGGATGG
1 GATGCCTTACTAGGT-TATAATGGATGG
8909308 GATGCCTTACTAGGTTATAATGGATG
1 GATGCCTTACTAGGTTATAATGGATG
8909334 ATGATATGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 23 0.92
28 2 0.08
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.34
Consensus pattern (27 bp):
GATGCCTTACTAGGTTATAATGGATGG
Found at i:8913493 original size:20 final size:21
Alignment explanation
Indices: 8913470--8913508 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
8913460 AGGAAAAAAA
8913470 TGAAAAAAAATT-TTTTGAGG
1 TGAAAAAAAATTCTTTTGAGG
*
8913490 TGAAAAAAATTTCTTTTGA
1 TGAAAAAAAATTCTTTTGA
8913509 ATGGCAAGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.44, C:0.03, G:0.15, T:0.38
Consensus pattern (21 bp):
TGAAAAAAAATTCTTTTGAGG
Found at i:8914733 original size:30 final size:29
Alignment explanation
Indices: 8914694--8914750 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
8914684 AGAAAAAGTA
*
8914694 AAAGTAAAAAGAAAAAGCAAGAAAAAAACC
1 AAAGCAAAAAGAAAAAG-AAGAAAAAAACC
* *
8914724 AAAGCAAAAATAAATAGAAGAAAAAAA
1 AAAGCAAAAAGAAAAAGAAGAAAAAAA
8914751 TGATTAAAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 10 0.42
30 14 0.58
ACGTcount: A:0.75, C:0.07, G:0.12, T:0.05
Consensus pattern (29 bp):
AAAGCAAAAAGAAAAAGAAGAAAAAAACC
Found at i:8916541 original size:23 final size:23
Alignment explanation
Indices: 8916514--8916575 Score: 60
Period size: 23 Copynumber: 2.8 Consensus size: 23
8916504 GAAAGTTTAT
8916514 CAAAAAAGAG-AAGAGAAAA-AAAA
1 CAAAAAAGAGTAA-A-AAAATAAAA
* *
8916537 GAAAAAATAGTAAAAAAATAAAA
1 CAAAAAAGAGTAAAAAAATAAAA
8916560 CAAAAAAGA--AAAAAAA
1 CAAAAAAGAGTAAAAAAA
8916576 CTCTATCATG
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 7 0.21
22 4 0.12
23 20 0.61
24 2 0.06
ACGTcount: A:0.81, C:0.03, G:0.11, T:0.05
Consensus pattern (23 bp):
CAAAAAAGAGTAAAAAAATAAAA
Found at i:8916551 original size:10 final size:9
Alignment explanation
Indices: 8916527--8916575 Score: 53
Period size: 9 Copynumber: 5.1 Consensus size: 9
8916517 AAAAGAGAAG
8916527 AGAAAAAAA
1 AGAAAAAAA
*
8916536 AGAAAAAAT
1 AGAAAAAAA
8916545 AGTAAAAAAA
1 AG-AAAAAAA
*
8916555 TAAAACAAAAA
1 -AGAA-AAAAA
8916566 AGAAAAAAA
1 AGAAAAAAA
8916575 A
1 A
8916576 CTCTATCATG
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
9 16 0.48
10 11 0.33
11 6 0.18
ACGTcount: A:0.84, C:0.02, G:0.08, T:0.06
Consensus pattern (9 bp):
AGAAAAAAA
Found at i:8916553 original size:21 final size:19
Alignment explanation
Indices: 8916527--8916575 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
8916517 AAAAGAGAAG
* *
8916527 AGAAAAAAAAGAA-AAAAT
1 AGAAAAAAAAAAACAAAAA
8916545 AGTAAAAAAATAAAACAAAAA
1 AG-AAAAAAA-AAAACAAAAA
8916566 AGAAAAAAAA
1 AGAAAAAAAA
8916576 CTCTATCATG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 2 0.08
19 8 0.31
20 10 0.38
21 6 0.23
ACGTcount: A:0.84, C:0.02, G:0.08, T:0.06
Consensus pattern (19 bp):
AGAAAAAAAAAAACAAAAA
Found at i:8917033 original size:23 final size:23
Alignment explanation
Indices: 8916954--8917041 Score: 72
Period size: 23 Copynumber: 3.9 Consensus size: 23
8916944 CATAAATTTC
* * *
8916954 AAGCCTAAATTAACTAACATTTT
1 AAGCCTAGATTAACTAGCACTTT
** *
8916977 AAGCCTAGATTAGTTGGCAAC--T
1 AAGCCTAGATTAACTAGC-ACTTT
* * *
8916999 AAGCCCACATTAACTGGCACTTT
1 AAGCCTAGATTAACTAGCACTTT
8917022 AAGCCTAGATTAACTAGCAC
1 AAGCCTAGATTAACTAGCAC
8917042 CCAAGCCCAA
Statistics
Matches: 49, Mismatches: 13, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
21 2 0.04
22 15 0.31
23 31 0.63
24 1 0.02
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (23 bp):
AAGCCTAGATTAACTAGCACTTT
Found at i:8917664 original size:22 final size:22
Alignment explanation
Indices: 8917622--8917664 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
8917612 GTGTCATCTC
**
8917622 TAAATCCTTTAGGCAGGATTTG
1 TAAATCCTTTAGGCAAAATTTG
8917644 TAAAT-CTTTAGGGCAAAATTT
1 TAAATCCTTTA-GGCAAAATTT
8917665 TTTAAATTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.37
Consensus pattern (22 bp):
TAAATCCTTTAGGCAAAATTTG
Found at i:8919141 original size:19 final size:20
Alignment explanation
Indices: 8919117--8919159 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
8919107 AAAGAAAGGG
8919117 AAAAGAAGAGAAAAAGAA-A
1 AAAAGAAGAGAAAAAGAAGA
* *
8919136 AAAAGAAGCGAAGAAGAAGA
1 AAAAGAAGAGAAAAAGAAGA
8919156 AAAA
1 AAAA
8919160 AAAAAGAGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.74, C:0.02, G:0.23, T:0.00
Consensus pattern (20 bp):
AAAAGAAGAGAAAAAGAAGA
Found at i:8919172 original size:24 final size:25
Alignment explanation
Indices: 8919120--8919173 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
8919110 GAAAGGGAAA
8919120 AGAAG-AGAAAAAGAAAAAAAGAAG
1 AGAAGAAGAAAAAGAAAAAAAGAAG
*
8919144 CGAAGAAGAAGAAA-AAAAAAAG-AG
1 AGAAGAAGAA-AAAGAAAAAAAGAAG
8919168 AGAAGA
1 AGAAGA
8919174 GGGCCACTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 11 0.42
25 12 0.46
26 3 0.12
ACGTcount: A:0.72, C:0.02, G:0.26, T:0.00
Consensus pattern (25 bp):
AGAAGAAGAAAAAGAAAAAAAGAAG
Found at i:8919785 original size:12 final size:13
Alignment explanation
Indices: 8919741--8919784 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
8919731 AATAAAATAG
8919741 AAAAAT-ATTTATA
1 AAAAATGATTT-TA
*
8919754 AAAAATAAATTTTA
1 AAAAAT-GATTTTA
8919768 AAAAATGATTTTA
1 AAAAATGATTTTA
8919781 AAAA
1 AAAA
8919785 TCCTGCCTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 16 0.57
14 8 0.29
15 4 0.14
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (13 bp):
AAAAATGATTTTA
Found at i:8920229 original size:16 final size:16
Alignment explanation
Indices: 8920208--8920243 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
8920198 TTCGTAAGAA
8920208 AAAATTTCAAAACCCT
1 AAAATTTCAAAACCCT
*
8920224 AAAA-TTCAATACCCT
1 AAAATTTCAAAACCCT
8920239 AAAAT
1 AAAAT
8920244 CTAAAATCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.53, C:0.22, G:0.00, T:0.25
Consensus pattern (16 bp):
AAAATTTCAAAACCCT
Found at i:8920285 original size:14 final size:14
Alignment explanation
Indices: 8920262--8920347 Score: 59
Period size: 14 Copynumber: 5.9 Consensus size: 14
8920252 CTATAGCCCC
8920262 AACCCT-AAATCGA
1 AACCCTAAAATCGA
*
8920275 AACCCTAAAATCAA
1 AACCCTAAAATCGA
*
8920289 AACCCTAAAACATTGA
1 AACCCT-AAA-ATCGA
*
8920305 AATCCTAAAATTC-A
1 AACCCTAAAA-TCGA
* *
8920319 AAACCTAAAACCTTTGA
1 AACCCTAAAA---TCGA
8920336 AACCCTAAAATC
1 AACCCTAAAATC
8920348 ATAAAACTAG
Statistics
Matches: 57, Mismatches: 9, Indels: 13
0.72 0.11 0.16
Matches are distributed among these distances:
13 6 0.11
14 24 0.42
15 7 0.12
16 10 0.18
17 10 0.18
ACGTcount: A:0.50, C:0.27, G:0.03, T:0.20
Consensus pattern (14 bp):
AACCCTAAAATCGA
Found at i:8920313 original size:16 final size:16
Alignment explanation
Indices: 8920287--8920345 Score: 50
Period size: 17 Copynumber: 3.7 Consensus size: 16
8920277 CCCTAAAATC
8920287 AAAACCCTAAAACATTG
1 AAAA-CCTAAAACATTG
* *
8920304 AAATCCT-AAA-ATTC
1 AAAACCTAAAACATTG
*
8920318 AAAACCTAAAACCTTTG
1 AAAACCTAAAA-CATTG
*
8920335 AAACCCTAAAA
1 AAAACCTAAAA
8920346 TCATAAAACT
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
14 9 0.27
15 6 0.18
16 3 0.09
17 15 0.45
ACGTcount: A:0.53, C:0.24, G:0.03, T:0.20
Consensus pattern (16 bp):
AAAACCTAAAACATTG
Found at i:8920314 original size:30 final size:30
Alignment explanation
Indices: 8920273--8920375 Score: 113
Period size: 31 Copynumber: 3.4 Consensus size: 30
8920263 ACCCTAAATC
8920273 GAAACCCTAAAATCAAAACCCTAAAA-CATT
1 GAAACCCTAAAATCAAAA-CCTAAAACCATT
* *
8920303 GAAATCCTAAAATTCAAAACCTAAAACCTTT
1 GAAACCCTAAAA-TCAAAACCTAAAACCATT
* *
8920334 GAAACCCTAAAATCATAAAACTAGAAACCCTT
1 GAAACCCTAAAATCA-AAACCTA-AAACCATT
8920366 -AAA-CCTAAAA
1 GAAACCCTAAAA
8920376 CCTCGAAACT
Statistics
Matches: 64, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
30 28 0.44
31 29 0.45
32 7 0.11
ACGTcount: A:0.52, C:0.24, G:0.04, T:0.19
Consensus pattern (30 bp):
GAAACCCTAAAATCAAAACCTAAAACCATT
Found at i:8920354 original size:16 final size:15
Alignment explanation
Indices: 8920216--8920354 Score: 51
Period size: 14 Copynumber: 9.3 Consensus size: 15
8920206 AAAAAATTTC
8920216 AAAACCCTAAAAT-T
1 AAAACCCTAAAATCT
*
8920230 CAATACCCTAAAATCT
1 -AAAACCCTAAAATCT
* * * *
8920246 AAAATCCT-ATAGCC
1 AAAACCCTAAAATCT
**
8920260 CCAACCCT-AAATC-
1 AAAACCCTAAAATCT
*
8920273 GAAACCCTAAAATC-
1 AAAACCCTAAAATCT
8920287 AAAACCCTAAAA-CATT
1 AAAACCCTAAAATC--T
* *
8920303 GAAATCCTAAAAT-T
1 AAAACCCTAAAATCT
*
8920317 CAAAA-CCTAAAACCTTT
1 -AAAACCCTAAAA--TCT
*
8920334 GAAACCCTAAAATCAT
1 AAAACCCTAAAATC-T
8920350 AAAAC
1 AAAAC
8920355 TAGAAACCCT
Statistics
Matches: 92, Mismatches: 20, Indels: 23
0.68 0.15 0.17
Matches are distributed among these distances:
13 7 0.08
14 35 0.38
15 22 0.24
16 20 0.22
17 8 0.09
ACGTcount: A:0.50, C:0.27, G:0.03, T:0.20
Consensus pattern (15 bp):
AAAACCCTAAAATCT
Found at i:8920383 original size:23 final size:23
Alignment explanation
Indices: 8920318--8920392 Score: 73
Period size: 23 Copynumber: 3.3 Consensus size: 23
8920308 CCTAAAATTC
*
8920318 AAAACCTAAAACCTTTGAAACCCT
1 AAAACCTAAAACC-TAGAAACCCT
*
8920342 AAAATCATAAAA-CTAGAAACCCT
1 AAAA-CCTAAAACCTAGAAACCCT
* * *
8920365 TAAACCTAAAACCTCGAAA-CTT
1 AAAACCTAAAACCTAGAAACCCT
8920387 AAAACC
1 AAAACC
8920393 CTCAAAATGA
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
22 13 0.31
23 18 0.43
24 5 0.12
25 6 0.14
ACGTcount: A:0.51, C:0.27, G:0.04, T:0.19
Consensus pattern (23 bp):
AAAACCTAAAACCTAGAAACCCT
Found at i:8920443 original size:23 final size:23
Alignment explanation
Indices: 8920417--8920491 Score: 71
Period size: 23 Copynumber: 3.2 Consensus size: 23
8920407 TCCATAATCC
*
8920417 TAAATCCCAAAACTCC-AAAACTT
1 TAAATCCCAAAAC-CCTAAAACCT
*
8920440 TAAATCCTAAAACCCTAAAACCT
1 TAAATCCCAAAACCCTAAAACCT
* * *
8920463 TAAAACCCTAAAACCATCAAAACCC
1 TAAATCCC-AAAACCCT-AAAACCT
8920488 TAAA
1 TAAA
8920492 CCTTGAAACT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
22 2 0.05
23 24 0.56
24 7 0.16
25 10 0.23
ACGTcount: A:0.51, C:0.31, G:0.00, T:0.19
Consensus pattern (23 bp):
TAAATCCCAAAACCCTAAAACCT
Found at i:8920456 original size:8 final size:8
Alignment explanation
Indices: 8920445--8920491 Score: 67
Period size: 8 Copynumber: 5.8 Consensus size: 8
8920435 AACTTTAAAT
8920445 CCTAAAAC
1 CCTAAAAC
8920453 CCTAAAAC
1 CCTAAAAC
*
8920461 CTTAAAAC
1 CCTAAAAC
8920469 CCTAAAAC
1 CCTAAAAC
*
8920477 CATCAAAAC
1 CCT-AAAAC
8920486 CCTAAA
1 CCTAAA
8920492 CCTTGAAACT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
8 27 0.79
9 7 0.21
ACGTcount: A:0.51, C:0.34, G:0.00, T:0.15
Consensus pattern (8 bp):
CCTAAAAC
Found at i:8920468 original size:16 final size:16
Alignment explanation
Indices: 8920447--8920689 Score: 84
Period size: 16 Copynumber: 15.8 Consensus size: 16
8920437 CTTTAAATCC
8920447 TAAAACCCTAAAACCT
1 TAAAACCCTAAAACCT
8920463 TAAAACCCTAAAACCAT
1 TAAAACCCTAAAACC-T
*
8920480 CAAAACCCT-AAACCT
1 TAAAACCCTAAAACCT
* * *
8920495 TGAAA-CTTAAAACTT
1 TAAAACCCTAAAACCT
* *
8920510 CTAAAA-CC-AAATCCC
1 -TAAAACCCTAAAACCT
* * *
8920525 TGACACCCT-AAATCT
1 TAAAACCCTAAAACCT
** * *
8920540 CGAAGCCCCAAAACCT
1 TAAAACCCTAAAACCT
* ** *
8920556 CAAAACTTTAAAACTTT
1 TAAAACCCTAAAAC-CT
*
8920573 TAAAACCCT-AAACCC
1 TAAAACCCTAAAACCT
* *
8920588 TAAATCTC-AAAATCC-
1 TAAAACCCTAAAA-CCT
**
8920603 T-AAACTTTCAAAA-CT
1 TAAAACCCT-AAAACCT
* *
8920618 TGAAACCTTAAAA-CT
1 TAAAACCCTAAAACCT
*
8920633 TAAAACCTTAAAACCT
1 TAAAACCCTAAAACCT
* *
8920649 CAAAATCCTAAAACC-
1 TAAAACCCTAAAACCT
8920664 -AAAA-CCT-AAACCT
1 TAAAACCCTAAAACCT
*
8920677 TAAAACCTTAAAA
1 TAAAACCCTAAAA
8920690 TGAGAACCTA
Statistics
Matches: 168, Mismatches: 41, Indels: 36
0.69 0.17 0.15
Matches are distributed among these distances:
12 5 0.03
13 3 0.02
14 18 0.11
15 54 0.32
16 72 0.43
17 16 0.10
ACGTcount: A:0.48, C:0.29, G:0.02, T:0.21
Consensus pattern (16 bp):
TAAAACCCTAAAACCT
Found at i:8920632 original size:15 final size:15
Alignment explanation
Indices: 8920612--8920689 Score: 81
Period size: 15 Copynumber: 5.3 Consensus size: 15
8920602 CTAAACTTTC
*
8920612 AAAACTTGAAACCTT
1 AAAACTTAAAACCTT
8920627 AAAACTTAAAACCTT
1 AAAACTTAAAACCTT
*
8920642 AAAACCTCAAAATCC-T
1 AAAA-CTTAAAA-CCTT
*
8920658 AAAAC-CAAAACC-T
1 AAAACTTAAAACCTT
*
8920671 AAACCTTAAAACCTT
1 AAAACTTAAAACCTT
8920686 AAAA
1 AAAA
8920690 TGAGAACCTA
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
13 7 0.13
14 11 0.20
15 23 0.43
16 11 0.20
17 2 0.04
ACGTcount: A:0.54, C:0.24, G:0.01, T:0.21
Consensus pattern (15 bp):
AAAACTTAAAACCTT
Found at i:8920634 original size:7 final size:7
Alignment explanation
Indices: 8920612--8920689 Score: 50
Period size: 8 Copynumber: 10.6 Consensus size: 7
8920602 CTAAACTTTC
8920612 AAAACTT
1 AAAACTT
*
8920619 GAAACCTT
1 -AAAACTT
8920627 AAAACTT
1 AAAACTT
8920634 AAAACCTT
1 AAAA-CTT
*
8920642 AAAACCTC
1 AAAA-CTT
*
8920650 AAAATCCT
1 AAAA-CTT
*
8920658 AAAAC-C
1 AAAACTT
*
8920664 AAAACCT
1 AAAACTT
*
8920671 AAACCTT
1 AAAACTT
8920678 AAAACCTT
1 AAAA-CTT
8920686 AAAA
1 AAAA
8920690 TGAGAACCTA
Statistics
Matches: 56, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
6 5 0.09
7 19 0.34
8 32 0.57
ACGTcount: A:0.54, C:0.24, G:0.01, T:0.21
Consensus pattern (7 bp):
AAAACTT
Found at i:8920642 original size:8 final size:8
Alignment explanation
Indices: 8920620--8920689 Score: 80
Period size: 8 Copynumber: 9.4 Consensus size: 8
8920610 TCAAAACTTG
8920620 AAACCTTA
1 AAACCTTA
8920628 AAA-CTTA
1 AAACCTTA
8920635 AAACCTTA
1 AAACCTTA
*
8920643 AAACCTCA
1 AAACCTTA
8920651 AAATCC-TA
1 AAA-CCTTA
8920659 AAACC--A
1 AAACCTTA
8920665 AAACC-T-
1 AAACCTTA
8920671 AAACCTTA
1 AAACCTTA
8920679 AAACCTTA
1 AAACCTTA
8920687 AAA
1 AAA
8920690 TGAGAACCTA
Statistics
Matches: 55, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
6 11 0.20
7 10 0.18
8 32 0.58
9 2 0.04
ACGTcount: A:0.54, C:0.26, G:0.00, T:0.20
Consensus pattern (8 bp):
AAACCTTA
Found at i:8920681 original size:28 final size:29
Alignment explanation
Indices: 8920623--8920713 Score: 78
Period size: 28 Copynumber: 3.1 Consensus size: 29
8920613 AAACTTGAAA
* *
8920623 CCTTAAAACTTAAAACCTTAAAACCTCAAAAT
1 CCTTAAAAC-CAAAACC-T-AAACCTAAAAAT
*
8920655 CC-TAAAACCAAAACCTAAACCTTAAAA-
1 CCTTAAAACCAAAACCTAAACCTAAAAAT
** *
8920682 CCTTAAAATGAGAACCTAAATCCTAAAAAT
1 CCTTAAAACCAAAACCTAAA-CCTAAAAAT
8920712 CC
1 CC
8920714 ACTAAGGCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
27 2 0.04
28 24 0.48
29 8 0.16
30 8 0.16
31 6 0.12
32 2 0.04
ACGTcount: A:0.51, C:0.26, G:0.02, T:0.21
Consensus pattern (29 bp):
CCTTAAAACCAAAACCTAAACCTAAAAAT
Found at i:8922435 original size:233 final size:236
Alignment explanation
Indices: 8921873--8922778 Score: 657
Period size: 232 Copynumber: 3.9 Consensus size: 236
8921863 TGTAACATAT
* * ** * * * *
8921873 TAAGAAAAAATTATAATAATTCTAAATGTAATGGAATGTAATAATAATCATAAGAAGATATTATT
1 TAAGAAAAAATTATGACAATTCTAAA--TAATTAAATGTAAGAACAACCATAAAAAGATATTATT
* * * * * * * * * *
8921938 GTAA-ACCAAATAATTATGTTGATATCGTAAAATTTTAATTAATTATTGTTCCTGTAAATAATTT
64 ATAATA-TAAATAATTATATTGACATCTTAAAATTTTAACTAATTATTATT--TTTATAT-ATAT
* * *
8922002 AA--AAAATAGCTAAAAATT--AAAAAACAAATTGAT-ATGTGAACAAGTGAG---AAATGTAAA
125 AAGGAAAATAGCTAAAAATTAAAAAAAATAAATTGGTAATGTAAACAAGTGAGAAAAAATGTAAA
* * ** * * * * * * * *
8922059 ATTAGTATCATTTTG-TGTAAAATGGGTAA-GAAGTACCGTAATATAT
190 ATTAATAT-AATTTGACATAAAAAGGGTAATAAAATGCCATAACACAC
* * ** * * *
8922105 TAA-AAAAGAACTATTACAATTCTAAACGTAACGAAAAGTAA-AA-ATACTTATAAAAATATATT
1 TAAGAAAA-AATTATGACAATTCTAAA--TAATTAAATGTAAGAACA-AC-CATAAAAAGATATT
*
8922167 ATTATAATATAAATAATTATGA-TGACATTTTAAAATTTTAACTAATTATTATTTTTATATATAT
61 ATTATAATATAAATAATTAT-ATTGACATCTTAAAATTTTAACTAATTATTATTTTTATATATAT
*
8922231 AAGGAAAATAGCTAGAAATTAAAAAAAATAAATTGGTAATGTAAACAAGTGAGAAAAAAATGTAA
125 AAGGAAAATAGCTAAAAATTAAAAAAAATAAATTGGTAATGTAAACAAGTGAG-AAAAAATGTAA
* * * ** * **
8922296 AAGTAGTATAATTTGA-AGT-AAAAGGAGTAA-AAAGTTTCATAATATGC
189 AATTAATATAATTTGACA-TAAAAAGG-GTAATAAAATGCCATAACACAC
* * * * * *
8922343 TAAGAAAGAGTTATGACAATTCTAAA-CA-T-ATTGTAAGAACAACCATAATAAGATATTATTGT
1 TAAGAAAAAATTATGACAATTCTAAATAATTAAATGTAAGAACAACCATAAAAAGATATTATTAT
* * * * * *
8922405 AACATAAATAATTATATTGGCAACTTAAAATTTTAACTAACTATTATTTTTTAAATATATAAGGG
66 AATATAAATAATTATATTGACATCTTAAAATTTTAACTAATTATTA-TTTTTATATATATAAGGA
* * * * * *
8922470 TAATAGTTAAAAATT--GAAAAATAAATAGGTAATGTAAAAAAGTGAGAGAAACA--TAAAATTA
130 AAATAGCTAAAAATTAAAAAAAATAAATTGGTAATGTAAACAAGTGAGA-AAAAATGTAAAATTA
*
8922531 ATATAATTTGACATAAAAATGGTAATAAAATGCCATAACACAC
194 ATATAATTTGACATAAAAAGGGTAATAAAATGCCATAACACAC
* * *
8922574 TAAGAAAAAATTATGACAATTCTAAATGTAATTAAATGTAGGAACAATCATAAAAAGAAATTATT
1 TAAGAAAAAATTATGACAATTCTAAA--TAATTAAATGTAAGAACAACCATAAAAAGATATTATT
* * * * * * *
8922639 ATAATGTAAATAATTA-AGTTGCCATCATAAAACTTTAATTAATTAATTTTTTTTATAAATATAC
64 ATAATATAAATAATTATA-TTGACATCTTAAAATTTTAACTAATT-ATTATTTTTATATATATA-
*
8922703 A-TAAAA-AGCTAAAAATTAAAAAAAA-AATATTGGTAATGTAAACAAGTGAG-AAAAATGTAAA
126 AGGAAAATAGCTAAAAATTAAAAAAAATAA-ATTGGTAATGTAAACAAGTGAGAAAAAATGTAAA
*
8922764 ATTAATATTATTTGA
190 ATTAATATAATTTGA
8922779 TGCAAGCAAA
Statistics
Matches: 535, Mismatches: 100, Indels: 73
0.76 0.14 0.10
Matches are distributed among these distances:
229 5 0.01
230 28 0.05
231 64 0.12
232 115 0.21
233 73 0.14
234 47 0.09
235 18 0.03
236 75 0.14
237 57 0.11
238 50 0.09
239 3 0.01
ACGTcount: A:0.50, C:0.06, G:0.11, T:0.32
Consensus pattern (236 bp):
TAAGAAAAAATTATGACAATTCTAAATAATTAAATGTAAGAACAACCATAAAAAGATATTATTAT
AATATAAATAATTATATTGACATCTTAAAATTTTAACTAATTATTATTTTTATATATATAAGGAA
AATAGCTAAAAATTAAAAAAAATAAATTGGTAATGTAAACAAGTGAGAAAAAATGTAAAATTAAT
ATAATTTGACATAAAAAGGGTAATAAAATGCCATAACACAC
Found at i:8923826 original size:232 final size:226
Alignment explanation
Indices: 8923376--8923902 Score: 571
Period size: 232 Copynumber: 2.3 Consensus size: 226
8923366 GTCGATAACC
* * * *
8923376 TAAACTTTTAATTGATTATTGTTTTGTAAATATATAAAAAATAGCTAAAATTTTAAAAACAAATA
1 TAAAATTTTAATTTATTA-T-TTTTGTAAATATATAAAAAAAAACTAAAA-TTT--AAA-AAA-A
* * * *
8923441 GGTAACATAAACAAGTGAGAAAAATGTAAAATTTCTATCATTTGCTGTAAAATAGATAAGAAGTG
59 GGTAACATAAACAAGTAAGAAAAATGTAAAATTTCTATCATTTGATGTAAAATAAATAAAAAGTG
* * **
8923506 TCGTAACATAAAATAAAATAGTTATAACAATTTCAAACATAATGAAAAGTAAAAACAACTGTAAG
124 TCGTAACATAAAATAAAAGAGTAATAACAATTTCAAACATAATGAAAAGTAAAAACAACCATAAG
*
8923571 AAGATATTATTGTAATGTAAATAATTAA-TAATGCAATG
189 AAGATATTATTGTAATGTAAATAATTAAGTAA-GCAACG
* *
8923609 TAAAATTTTAATTAATCATTATTTTTGTAAATATATAAAAAAAATCTAAAAGTTAAAAAAAGGTA
1 TAAAATTTTAATT--T-ATTATTTTTGTAAATATATAAAAAAAAACTAAAATTTAAAAAAAGGTA
*
8923674 A-AGTCAACAAGTAAGAAAAATTGTAAAA-TTCATATCATTTGATGTAAAATAAATAAAAAGTGT
63 ACA-TAAACAAGTAAGAAAAA-TGTAAAATTTC-TATCATTTGATGTAAAATAAATAAAAAGTG-
* * ** * * * *
8923737 TC-TAATACATATTAA-AAAAGAGTAATAATAA-TTCTAAATGTAATGTAAGGTAAGAATAACCA
124 TCGT-A-ACATA-AAATAAAAGAGTAATAACAATTTC-AAACATAATGAAAAGTAAAAACAACCA
* *
8923799 TAAGAAGATATTATTTTAATGTAAATAATTAAGTAAGTAACG
185 TAAGAAGATATTATTGTAATGTAAATAATTAAGTAAGCAACG
8923841 TAAAATTTTAATTTATTATTGTTCTGTAAATATATAAGAAAAATAACTAAAATTTAAAAAAA
1 TAAAATTTTAATTTATTATT-TT-TGTAAATATATAA-AAAAA-AACTAAAATTTAAAAAAA
8923903 CAAATTGGTA
Statistics
Matches: 251, Mismatches: 27, Indels: 32
0.81 0.09 0.10
Matches are distributed among these distances:
228 1 0.00
229 30 0.12
230 41 0.16
231 22 0.09
232 90 0.36
233 35 0.14
234 27 0.11
235 1 0.00
236 4 0.02
ACGTcount: A:0.51, C:0.06, G:0.10, T:0.33
Consensus pattern (226 bp):
TAAAATTTTAATTTATTATTTTTGTAAATATATAAAAAAAAACTAAAATTTAAAAAAAGGTAACA
TAAACAAGTAAGAAAAATGTAAAATTTCTATCATTTGATGTAAAATAAATAAAAAGTGTCGTAAC
ATAAAATAAAAGAGTAATAACAATTTCAAACATAATGAAAAGTAAAAACAACCATAAGAAGATAT
TATTGTAATGTAAATAATTAAGTAAGCAACG
Found at i:8924049 original size:237 final size:228
Alignment explanation
Indices: 8923376--8924305 Score: 613
Period size: 238 Copynumber: 4.0 Consensus size: 228
8923366 GTCGATAACC
* * * *
8923376 TAAACTTTTAATTGATTATTGTTTTGTAAATATAT-AAAAAATAGCTAAAATTTTAAAAACAAAT
1 TAAAATTTTAATTTATTATTGTTCTGTAAATATATAAAAAAATAACTAAAA-TTTAAAAACAAAT
* *
8923440 AGGTAACATAAACAAGTGAGAAAAATGTAAAATTTCTATCATTTGCTGTAAAATAGATAAGAAGT
65 -GGTAACAGAAACAAGTGAGAAAAATGTAAAATTTATATCATTTGCTGTAAAATAG-TAAGAAGT
** * * * *
8923505 GTCGTAACATAAAATAAAATAGTTATAACAATTTC-AAACATAATGAAAAGTAAAAACAACTGTA
128 GTTATAACATATAA-AAAAGAGTTAT---AATTTCTAAACTTAATGAAAAGTAAGAACAACTGTA
*
8923569 AGAAGATATTATTGTAATGTAAATAATTAA-TAATGCAATG
189 AGAAGATATTATTGTAATGTAAATAATTAAGTAA-GCAACG
* *
8923609 TAAAATTTTAATTAATCATTATT-TT-TGTAAATATATAAAAAAA-ATCTAAAAGTT-AAAA-AA
1 TAAAATTTTAATT--T-ATTATTGTTCTGTAAATATATAAAAAAATAACTAAAATTTAAAAACAA
* * * * * *
8923669 A-GGTAA-AGTCAACAAGTAAGAAAAATTGTAAAATTCATATCATTTGATGTAAAATAAATAAAA
63 ATGGTAACAG-AAACAAGTGAGAAAAA-TGTAAAATTTATATCATTTGCTGTAAAAT-AGTAAGA
* * * * *
8923732 AGTGTTCTAATACATATTAAAAAAGAGTAATAATAATTCTAAA-TGTAATGTAAGGTAAGAATAA
125 AGTGTTAT-A-ACATA-TAAAAAAGAGTTATAAT--TTCTAAACT-TAATGAAAAGTAAGAACAA
** * *
8923796 CCATAAGAAGATATTATTTTAATGTAAATAATTAAGTAAGTAACG
184 CTGTAAGAAGATATTATTGTAATGTAAATAATTAAGTAAGCAACG
8923841 TAAAATTTTAATTTATTATTGTTCTGTAAATATATAAGAAAAATAACTAAAATTTAAAAAAACAA
1 TAAAATTTTAATTTATTATTGTTCTGTAAATATATAA-AAAAATAACTAAAATTT--AAAAACAA
* * * * * * * *
8923906 ATTGGTAACAGAAAAAAATGAGAAAAGGTGCAAATTTTGTATAATTTGCCGTAAAATGAGTAAGA
63 A-TGGTAACAGAAACAAGTGAGAAAA-ATGTAAAATTTATATCATTTGCTGTAAAAT-AGTAAGA
* * * * *
8923971 AGTGTTATAACACACTAAAAAAGAGTTATGAATGTTCTAAACTTATTGGAATGTAAGAACAATTG
125 AGTGTTATAACATA-TAAAAAAGAGTTAT-AAT-TTCTAAACTTAATGAAAAGTAAGAACAACTG
* ** * ** *
8924036 TACA-AAAATATTATTGTAACATAAAT-ATTCGAGTTGGCAATG
187 TA-AGAAGATATTATTGTAATGTAAATAATT-AAGTAAGCAACG
* * * * * **
8924078 TAAACTTTTAATTAAGTATTATTCAAGTAAATATATAAGAAAAATATTTAATAAATTATAATAAA
1 TAAAATTTTAATTTATTATTGTTC-TGTAAATATATAA-AAAAATAACT-A-AAATT-TAA-AAA
* * *** * * ** * *
8924143 AAAAT-TTAACTTTAGCATGAAAGAGAAAACGTAAAATTTATATCATTTGATGTAAAATATGTAA
60 CAAATGGTAACAGAAACAAGTGAGA-AAAATGTAAAATTTATATCATTTGCTGTAAAATA-GTAA
* * *
8924207 -AAGGTAGCT-TAAC-TCA-ACAAGAAAGAGCTATGACAATTCTAAA-TGTAAT-AGAAAGTAAG
123 GAA-GT-GTTATAACAT-ATA-AA-AAAGAGTTAT-A-ATTTCTAAACT-TAATGA-AAAGTAAG
* * * *
8924266 AACGACTGTAAGAAAATATTTTTATAATGTAAATAATTAA
179 AACAACTGTAAGAAGATATTATTGTAATGTAAATAATTAA
8924306 ATCAGTAACA
Statistics
Matches: 544, Mismatches: 105, Indels: 91
0.74 0.14 0.12
Matches are distributed among these distances:
228 1 0.00
229 28 0.05
230 39 0.07
231 21 0.04
232 90 0.17
233 28 0.05
234 18 0.03
235 8 0.01
236 14 0.03
237 96 0.18
238 124 0.23
239 63 0.12
240 13 0.02
241 1 0.00
ACGTcount: A:0.50, C:0.06, G:0.12, T:0.32
Consensus pattern (228 bp):
TAAAATTTTAATTTATTATTGTTCTGTAAATATATAAAAAAATAACTAAAATTTAAAAACAAATG
GTAACAGAAACAAGTGAGAAAAATGTAAAATTTATATCATTTGCTGTAAAATAGTAAGAAGTGTT
ATAACATATAAAAAAGAGTTATAATTTCTAAACTTAATGAAAAGTAAGAACAACTGTAAGAAGAT
ATTATTGTAATGTAAATAATTAAGTAAGCAACG
Found at i:8924053 original size:16 final size:17
Alignment explanation
Indices: 8924032--8924064 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8924022 TGTAAGAACA
8924032 ATTGT-ACAAAAATATT
1 ATTGTAACAAAAATATT
*
8924048 ATTGTAACATAAATATT
1 ATTGTAACAAAAATATT
8924065 CGAGTTGGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (17 bp):
ATTGTAACAAAAATATT
Found at i:8924137 original size:23 final size:24
Alignment explanation
Indices: 8924105--8924151 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
8924095 ATTATTCAAG
*
8924105 TAAATATATAAGAAAAATATTTAA
1 TAAATATATAAGAAAAAAATTTAA
*
8924129 TAAAT-TATAATAAAAAAATTTAA
1 TAAATATATAAGAAAAAAATTTAA
8924152 CTTTAGCATG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 16 0.76
24 5 0.24
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (24 bp):
TAAATATATAAGAAAAAAATTTAA
Found at i:8934701 original size:8 final size:8
Alignment explanation
Indices: 8934688--8934716 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
8934678 AGCCTTACAT
8934688 TTTTAATA
1 TTTTAATA
8934696 TTTTAATA
1 TTTTAATA
8934704 TTTTAATA
1 TTTTAATA
8934712 TTTTA
1 TTTTA
8934717 TGCATATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (8 bp):
TTTTAATA
Found at i:8935779 original size:15 final size:15
Alignment explanation
Indices: 8935756--8935785 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8935746 AAAAATAAAG
*
8935756 AAATTTTTAAAAAAT
1 AAATATTTAAAAAAT
8935771 AAATATTTAAAAAAT
1 AAATATTTAAAAAAT
8935786 CGATAGTTCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
AAATATTTAAAAAAT
Found at i:8936564 original size:36 final size:36
Alignment explanation
Indices: 8936515--8936588 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
8936505 ACCTAATGGC
8936515 TAGTGGGAGTTCTAAGATAATTGATTTGTTCTATCT
1 TAGTGGGAGTTCTAAGATAATTGATTTGTTCTATCT
*
8936551 TAGTGGGATTTCTAAGATAATTGATTTGTTCTATCT
1 TAGTGGGAGTTCTAAGATAATTGATTTGTTCTATCT
8936587 TA
1 TA
8936589 TAAATGTTGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.26, C:0.08, G:0.20, T:0.46
Consensus pattern (36 bp):
TAGTGGGAGTTCTAAGATAATTGATTTGTTCTATCT
Found at i:8937058 original size:14 final size:14
Alignment explanation
Indices: 8937017--8937043 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8937007 TTCAAATACA
8937017 ATATAGAGAATATG
1 ATATAGAGAATATG
8937031 ATATAGAGAATAT
1 ATATAGAGAATAT
8937044 AGAGAATATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.19, T:0.30
Consensus pattern (14 bp):
ATATAGAGAATATG
Found at i:8941173 original size:67 final size:67
Alignment explanation
Indices: 8941043--8941173 Score: 171
Period size: 68 Copynumber: 1.9 Consensus size: 67
8941033 TTTGATCCAA
* *
8941043 AAAAATAAAGAAAAAAAATTTTGTTTTAAATTTGATTTGTTTTTGTTTCAAAAAAGGAGAAAAAG
1 AAAAATAAAGAAAAAAAATTTTGTTTTAAATTTGA-TTGTTTTTGTTCCAAAAAAGGAAAAAAAG
8941108 AAC
65 AAC
8941111 AAAAATAAA-AATAAAAAATAGTATTGTTTTAAATTTGA-T-TTTTT-TTCCAAAAAAGGAAAAA
1 AAAAATAAAGAA-AAAAAAT--T-TTGTTTTAAATTTGATTGTTTTTGTTCCAAAAAAGGAAAAA
8941172 AA
62 AA
8941174 AAAGCAAATT
Statistics
Matches: 57, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
67 19 0.33
68 21 0.37
69 1 0.02
70 1 0.02
71 15 0.26
ACGTcount: A:0.53, C:0.03, G:0.11, T:0.34
Consensus pattern (67 bp):
AAAAATAAAGAAAAAAAATTTTGTTTTAAATTTGATTGTTTTTGTTCCAAAAAAGGAAAAAAAGA
AC
Found at i:8941884 original size:25 final size:25
Alignment explanation
Indices: 8941856--8941911 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
8941846 TGCAAATATG
*
8941856 TCATTTGATGCATATTTTAATCATA
1 TCATTTCATGCATATTTTAATCATA
* * *
8941881 TCATCTCATGCATATTTTAATTATG
1 TCATTTCATGCATATTTTAATCATA
8941906 TCATTT
1 TCATTT
8941912 ATTATATGTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.29, C:0.14, G:0.07, T:0.50
Consensus pattern (25 bp):
TCATTTCATGCATATTTTAATCATA
Found at i:8945248 original size:626 final size:629
Alignment explanation
Indices: 8944010--8947097 Score: 2802
Period size: 627 Copynumber: 4.9 Consensus size: 629
8944000 CAAATGCTGT
* * * * * *
8944010 AAGAAGAAATAGGTTAACTCAAGTATGAA-AAAGGTGTGCAAAAGGATATGGTAGAAAATATGAC
1 AAGAAAAAATAGATTAGCTCAAGTATGAAGAAA-GTGAGCAAAATGATATGCTAGAAAATATGAC
* * * *
8944074 AAAGGAAAAATACTTGGCT-TATAATGACCTCAAAGAGCTACACTTAGAAAACTAATGATTAAGG
65 AAAGGAAAAAGACTTGGCTCGA-AGTGACCTCAAAGAGCTACACTTA-AAAACCAATGATTAAGG
* * * ** * * *
8944138 GTTTAGTTAAAAGATAAGTTAAA-GAAAGTAAACAT-TGGAATGAGATAGAGTAGCTTCGGGATG
128 GCTTAGTTAAAAGATAAGGTAAAGGAAAGTAAAAATCAAG-ATGAGATAGAGCAACTTCGAGATG
* * * * *
8944201 AAGTTCATATT-TAGAGGTGAAAGGCTTGGGATAACGATGACAAAATCAACATGACAGTATGAAA
192 AAGTTCAT-TTCTAGAGGCG-TAGGCTTGGGATAGCGATGACAAAATCAACGTGACAGTATGAGA
*** * * * *
8944265 AAAGAAAGATTCACACAAAGCCCTTGTAGCATACAAAAAGGAATTAAGCAACACTCAGGAAGAGA
255 AAAGAAAGATTCACACAAAGCCCTCACAACACACAAAAGGGAATTAAGCAAGACTCAGGAAGAGA
* * *
8944330 ATGAAGAATTGAAGGAATAGTTGAGATGTGAGAA-AAAGAGGAGTCTGGATACTC-AAGAGGAAA
320 ATGAAGAATTGAAGGAAGAGTTGAGATGTGAGAAGAAA-A-GCGTCTAGATACTCAAAG-GGAAA
* * * * * * *
8944393 AAGATGAACTT-AAATAGAAATCAAGACCATGGAAATGCAGTTGTAAGAAAACAAGGATTGCATT
382 AA-ATGCACTTGGAATAGAAATCAAGGCTATAGAGATGCAGTTGCAAGAAAACAAGGATTGCATT
* * *
8944457 GCTCGCCTACACAAGGAATGGCAAGAAAAGAAGGTTGAATGGAAACAAGTTTGCAACCAAAAGGT
446 GCTCACCTACACAAGGAATGGCAAGAAAAGGAGGTTGAATGGAAACAAGTTTGCAACCAAGAGGT
* * * ** * ** *
8944522 AGAAGCCTATAAGTATTAGAAGATTAAGAGTAAAAGAAGATAGATGTATATTGATCACCTTAGTA
511 AGAAGCCTATAAGTATTGGAAGATTAGGAGTTAGGGGAGATAGATGTATATCAACCACCTTAGTA
* * * *
8944587 TTCAG-ATCTGAAAGGTAGTCAGAGA-AGACGAGGTGATGAT-GAAAAAGTTGT
576 CTCAGTATCTAAAAGGTAGTCAGATAGAGACGAGGTGATGATGGAAAAAGTTGC
*
8944638 AA-AAAAACATCA-ATTAGCTCAAGTATGAAGAAAGTGAGCAAAATGATATGTTAGAAAATATGA
1 AAGAAAAA-AT-AGATTAGCTCAAGTATGAAGAAAGTGAGCAAAATGATATGCTAGAAAATATGA
*
8944701 CAAAGGAAAGAGACTTGGCTCGAAGTGACCTCAAAGAGCTACACTTAAAAACCAATGATTAAGGG
64 CAAAGGAAAAAGACTTGGCTCGAAGTGACCTCAAAGAGCTACACTTAAAAACCAATGATTAAGGG
* * * *
8944766 CTTAGTTAAAAAACAAGGTAAAGGAAAGTAAAAATCAAGATGAGGTAGAGCAACTTCGAGAAGAA
129 CTTAGTTAAAAGATAAGGTAAAGGAAAGTAAAAATCAAGATGAGATAGAGCAACTTCGAGATGAA
* * * * * * * *
8944831 GTTCATTTCTAAAGGTGTAGGACTTGTGATAGCAAAGACAAAATCAACATGACAATACGAGAAAA
194 GTTCATTTCTAGAGGCGTAGG-CTTGGGATAGCGATGACAAAATCAACGTGACAGTATGAGAAAA
*
8944896 GAAAGATTCACACAAAGCCCTCACAACACACAAAAGGGAATTAAGCAAGACTCAAGAAG-GAATG
258 GAAAGATTCACACAAAGCCCTCACAACACACAAAAGGGAATTAAGCAAGACTCAGGAAGAGAATG
* * * * * * * * **
8944960 AAAAATTGAAAGAATAGTTGAGCTGTGAGAAGATAAGCTGTTTGGATACTC-ATGGGGCAAAATG
323 AAGAATTGAAGGAAGAGTTGAGATGTGAGAAGAAAAGC-GTCTAGATACTCAAAGGGAAAAAATG
* * * * * * *
8945024 CACTTAGAAAAGAAATCAAGGCTACAAAGATGCAGTTGCAAGAAAATAAGGATTACATTGTTCAC
387 CACTTGGAATAGAAATCAAGGCTATAGAGATGCAGTTGCAAGAAAACAAGGATTGCATTGCTCAC
* * * * *
8945089 TTATATAGGGAATGGCAAGAAAAGGAGGTTGAATGGAAACAAGTTTGCAACCAAGAGATAGAAGC
452 CTACACAAGGAATGGCAAGAAAAGGAGGTTGAATGGAAACAAGTTTGCAACCAAGAGGTAGAAGC
* *
8945154 CTATAAGTATTGGAAGATTAGGAATTAGGGGAGATAGATGTACATCAACCACCTTAGTACTCAGT
517 CTATAAGTATTGGAAGATTAGGAGTTAGGGGAGATAGATGTATATCAACCACCTTAGTACTCAGT
* * * *
8945219 TTC-AAAAGATAGTCAGATAGAG-TGAGGTGATGATGGAAAAGGTTGC
582 ATCTAAAAGGTAGTCAGATAGAGACGAGGTGATGATGGAAAAAGTTGC
* ** * * * * * * *
8945265 AATAGGAAATAGGTTGGCTCAAATATGAAGAAGGTGTA-CAAAAAGATATGCTAGAAAAAATGAT
1 AAGAAAAAATAGATTAGCTCAAGTATGAAGAAAGTG-AGCAAAATGATATGCTAGAAAATATGAC
** * * * * *
8945329 AAAGGAAAAAGACTTGGCTTAAAGTGACATCAAAGA-TTACATTTAAAAAACCAACGATT-AGAG
65 AAAGGAAAAAGACTTGGCTCGAAGTGACCTCAAAGAGCTACACTT-AAAAACCAATGATTAAGGG
* * * * * * * * *
8945392 CTCAGTTAAAAGACAAGGTAAAAGAAAGTAAAGATC-GGTACGAGATAGGGCAACTTTGAGATGG
129 CTTAGTTAAAAGATAAGGTAAAGGAAAGTAAAAATCAAG-ATGAGATAGAGCAACTTCGAGATGA
* * * * * * * *
8945456 TGTTCATTTAT-GAAGCCATAGGGCTTAGGATAGCAATGACAAAATCAATGTGACAATATGAGAA
193 AGTTCATTTCTAG-AGGCGTA-GGCTTGGGATAGCGATGACAAAATCAACGTGACAGTATGAGAA
* * * ** * *
8945520 AAAAAAGATTCATACAAAGCCGTCACAGTACCCAAAAGGGAATTAAGCAAGACTTAGGAAGAGAA
256 AAGAAAGATTCACACAAAGCCCTCACAACACACAAAAGGGAATTAAGCAAGACTCAGGAAGAGAA
* * * * * *
8945585 TGAAGAATTGAAGGAAGAGTTAAGATATAAGAAAAAAAGATGTCTAGATACTCGAAA-AGAAAAG
321 TGAAGAATTGAAGGAAGAGTTGAGATGTGAGAAGAAAAG-CGTCTAGATACTC-AAAGGGAAAA-
* * * * * *
8945649 GATGCACTTGGAATAGAAATCAGGGCCATAGAGATGCAGTTGCAAGAAAACTAGGATTACATTAC
383 AATGCACTTGGAATAGAAATCAAGGCTATAGAGATGCAGTTGCAAGAAAACAAGGATTGCATTGC
* * ** * ** * * *
8945714 TTACCTACATAAATAATGGTAAGAAAAAAAGGTTGAATGGAAAAAAGTTTACAA-CTAGAGGTAG
448 TCACCTACACAAGGAATGGCAAGAAAAGGAGGTTGAATGGAAACAAGTTTGCAACCAAGAGGTAG
* * * * ** *
8945778 AAGCCCACAAGTATTGGAAGACTAAGAGTTAAAGGAGATAGATGTATATCAACCACCTTAGTATT
513 AAGCCTATAAGTATTGGAAGATTAGGAGTTAGGGGAGATAGATGTATATCAACCACCTTAGTACT
* * * * * * *
8945843 CA-AATCTGAAAGGTAGTTACAT--AGACGATGTGATGATGGAAAAAGCTAC
578 CAGTATCTAAAAGGTAGTCAGATAGAGACGAGGTGATGATGGAAAAAGTTGC
** * * * *
8945892 AAGAGGAAATA-AGTTAGCTAAAGTATGAAGTAAGTGTA-CAAAA-GCATATGCTAAAAAAGATG
1 AAGAAAAAATAGA-TTAGCTCAAGTATGAAGAAAGTG-AGCAAAATG-ATATGCTAGAAAATATG
* * * * * **
8945954 ACAAAAGAAAGAGACTTGGCTTGAAATGACCTCAAAGAGCTAAACTTAGAAAAACCAATGGCTAA
63 ACAAAGGAAAAAGACTTGGCTCGAAGTGACCTCAAAGAGCTACACTT--AAAAACCAATGATTAA
* * * * ** * * *
8946019 AGGCTTAGTTAAAAAATGAGGTAAAGGAAAGTAGAAATCAAGACAAGATAGAACAGCTT-TAGGA
126 GGGCTTAGTTAAAAGATAAGGTAAAGGAAAGTAAAAATCAAGATGAGATAGAGCAACTTCGA-GA
** * * *
8946083 TGAAGTTCATTTCTAGAGGCGTAGGGCTTGGGATAGCGATGACAAAATTTATGTAATAGTATGA-
190 TGAAGTTCATTTCTAGAGGCGTA-GGCTTGGGATAGCGATGACAAAATCAACGTGACAGTATGAG
* * * *
8946147 AAAAGAAATATT--CACAAAGCCCCCACAACACACAAAAGGGAATTAAGTAAGATTCAGGAA-AG
254 AAAAGAAAGATTCACACAAAGCCCTCACAACACACAAAAGGGAATTAAGCAAGACTCAGGAAGAG
* *
8946209 AATGAAGAATTGAAGGAAGAGTTGATATGTGAGAAGAAAAGGCATCTAGATACTCAAAGGGAAAA
319 AATGAAGAATTGAAGGAAGAGTTGAGATGTGAGAAGAAAA-GCGTCTAGATACTCAAAGGG-AAA
* * * * ** *
8946274 AAATGCACTTGGAATAGAAATTAAAGCT-TAGAGATGTAGTTGTAAGAAAACAAGGATTGCGCTA
382 AAATGCACTTGGAATAGAAATCAAGGCTATAGAGATGCAGTTGCAAGAAAACAAGGATTGCATTG
* * * * *
8946338 CTCGA-TTACACAGGGAATGCCAAGAAAATGAGGTTGAATGGAAACAAGTTTGCAACTAAGAGGT
447 CTC-ACCTACACAAGGAATGGCAAGAAAAGGAGGTTGAATGGAAACAAGTTTGCAACCAAGAGGT
* * * ** * * * * * *
8946402 AAAAGCCCACAAGTATTAAAAGATTAGAAATTAGGGAAGACAAATGTATATTAACCACCTTAGTT
511 AGAAGCCTATAAGTATTGGAAGATTAGGAGTTAGGGGAGATAGATGTATATCAACCACCTTAG--
* * * *
8946467 TA-T-A-AATCTAAAAGGTAGTCAGACAG-G-CTGATGTGATGATGGAAAATGTTGC
574 TACTCAGTATCTAAAAGGTAGTCAGATAGAGAC-GAGGTGATGATGGAAAAAGTTGC
* * * * * *
8946519 AA-AAAGAAATAGGTTAGTTCAAATATGAAGAAA-TTATGCACAATGTTATGCTAGAAAGATA--
1 AAGAAA-AAATAGATTAGCTCAAGTATGAAGAAAGTGA-GCAAAATGATATGCTAGAAA-ATATG
* * * ** *
8946580 AAAAAAGAAAAAGACTTGGCTCGAAGTGACCTTAAAGAGCTACACTTTAAAAATAAATTATTAAG
63 ACAAAGGAAAAAGACTTGGCTCGAAGTGACCTCAAAGAGCTACAC-TTAAAAACCAATGATTAAG
* * * * *
8946645 GGCTCAGTTAAAAGATAAGGTAAAGAAAAGTAAATATCGAGATGAAATAGAGCAACTTC-AGGAT
127 GGCTTAGTTAAAAGATAAGGTAAAGGAAAGTAAAAATCAAGATGAGATAGAGCAACTTCGA-GAT
* * * * * * *
8946709 GAAGTT-GTTTCTGGAGACGTAAGGCTTGGGATAGTGATGATAAAATCAACGTGATAGTATAAGA
191 GAAGTTCATTTCTAGAGGCGT-AGGCTTGGGATAGCGATGACAAAATCAACGTGACAGTATGAGA
* * * * * * * * *
8946773 AAAGAAATATTCATACAAAACCCTCATAACATATAAAAAGGAATTAAACAAGACTCAAGAAGAGA
255 AAAGAAAGATTCACACAAAGCCCTCACAACACACAAAAGGGAATTAAGCAAGACTCAGGAAGAGA
* * * * * * * *
8946838 ATTAAGAATTGAAAGAAGAGTTGAGATGTGAAAAGCAAAGGCATATAGATATTCAAAGAGAAAAA
320 ATGAAGAATTGAAGGAAGAGTTGAGATGTGAGAAG-AAAAGCGTCTAGATACTCAAAG-GGAAAA
* * * * *
8946903 AATGCACTTGGAATAGAAATCAAAGCTATAGAGATGAAATTGCAAGGAAACATGGATTGCATTGC
383 AATGCACTTGGAATAGAAATCAAGGCTATAGAGATGCAGTTGCAAGAAAACAAGGATTGCATTGC
* * * *
8946968 TCACCTACACAAAGAGTGGTAAG-AAA-GAGGTTGAATGGAAACAAGTTTGCAACCAAAAGGTAG
448 TCACCTACACAAGGAATGGCAAGAAAAGGAGGTTGAATGGAAACAAGTTTGCAACCAAGAGGTAG
* * * * * * *
8947031 AAACCTGTAAGTATTGGAATATTGGGAGTCAGGGGAGACAAATGTATATCAACCACCTTAGTACT
513 AAGCCTATAAGTATTGGAAGATTAGGAGTTAGGGGAGATAGATGTATATCAACCACCTTAGTACT
8947096 CA
578 CA
8947098 TATTTGAAAA
Statistics
Matches: 1988, Mismatches: 407, Indels: 131
0.79 0.16 0.05
Matches are distributed among these distances:
624 44 0.02
625 166 0.08
626 539 0.27
627 568 0.29
628 399 0.20
629 174 0.09
630 96 0.05
631 2 0.00
ACGTcount: A:0.44, C:0.11, G:0.23, T:0.21
Consensus pattern (629 bp):
AAGAAAAAATAGATTAGCTCAAGTATGAAGAAAGTGAGCAAAATGATATGCTAGAAAATATGACA
AAGGAAAAAGACTTGGCTCGAAGTGACCTCAAAGAGCTACACTTAAAAACCAATGATTAAGGGCT
TAGTTAAAAGATAAGGTAAAGGAAAGTAAAAATCAAGATGAGATAGAGCAACTTCGAGATGAAGT
TCATTTCTAGAGGCGTAGGCTTGGGATAGCGATGACAAAATCAACGTGACAGTATGAGAAAAGAA
AGATTCACACAAAGCCCTCACAACACACAAAAGGGAATTAAGCAAGACTCAGGAAGAGAATGAAG
AATTGAAGGAAGAGTTGAGATGTGAGAAGAAAAGCGTCTAGATACTCAAAGGGAAAAAATGCACT
TGGAATAGAAATCAAGGCTATAGAGATGCAGTTGCAAGAAAACAAGGATTGCATTGCTCACCTAC
ACAAGGAATGGCAAGAAAAGGAGGTTGAATGGAAACAAGTTTGCAACCAAGAGGTAGAAGCCTAT
AAGTATTGGAAGATTAGGAGTTAGGGGAGATAGATGTATATCAACCACCTTAGTACTCAGTATCT
AAAAGGTAGTCAGATAGAGACGAGGTGATGATGGAAAAAGTTGC
Found at i:8946166 original size:627 final size:626
Alignment explanation
Indices: 8944010--8947093 Score: 2753
Period size: 626 Copynumber: 4.9 Consensus size: 626
8944000 CAAATGCTGT
* * * * * *
8944010 AAGAAGAAATAGGTTAACTCAAGTATGAA-AAAGGTGTGCAAAAGGATATGGTAGAAAATATGAC
1 AAGAAGAAATAGGTTAGCTAAAGTATGAAGAAA-GTGTACAAAA-GATATGCTAAAAAAGATGAC
* * *
8944074 AAAGGAAAAATACTTGGCTT-ATAATGACCTCAAAGAGCTACACTTAGAAAACTAATGATTAAGG
64 AAAGGAAAAAGACTTGGCTTGA-AATGACCTCAAAGAGCTACACTTAAAAAACCAATGATTAAGG
* * ** * * **
8944138 GTTTAGTTAAAAGATAAGTTAAA-GAAAGTAAACAT-TGGA-ATGAGATAGAGTAGCTTCGGGAT
128 GCTTAGTTAAAAGATAAGGTAAAGGAAAGTAAACATCAAGACA--AGATAGAGCAACTTTAGGAT
* * * * * *
8944200 GAAGTTCATATT-TAGAGGTGAAAGGCTTGGGATAACGATGACAAAATCAACATGACAGTATGAA
191 GAAGTTCAT-TTCTAGAGGCGTAGGGCTTGGGATAGCGATGACAAAATCAACGTGACAGTATGAG
*** * * * *
8944264 AAAAGAAAGATTCACACAAAGCCCTTGTAGCATACAAAAAGGAATTAAGCAACACTCAGGAAGAG
255 AAAAGAAAGATT--CACAAAGCCCTCACAACACACAAAAGGGAATTAAGCAAGACTCAGGAAGAG
* * *
8944329 AATGAAGAATTGAAGGAATAGTTGAGATGTGAGAAAAAGAGGA-GTCTGGATACTCAAGAGGAAA
318 AATGAAGAATTGAAGGAAGAGTTGAGATGTGAGAAAAA-AAGACGTCTAGATACTCAA-AGGAAA
* * * * * * *
8944393 AAGATGAACTT-AAATAGAAATCAAGACCATGGAAATGCAGTTGTAAGAAAACAAGGATTGCATT
381 AAAATGCACTTGGAATAGAAATCAAGGCCATAGAGATGCAGTTGCAAGAAAACAAGGATTGCATT
* * *
8944457 GCTCGCCTACACAAGGAATGGCAAG-AAAAGAAGGTTGAATGGAAACAAGTTTGCAACCAAAAGG
446 ACTCACCTACACAAGGAATGGCAAGAAAAAG-AGGTTGAATGGAAACAAGTTTGCAACCAAGAGG
* * * * ** *
8944521 TAGAAGCCTATAAGTATTAGAAGATTAAGAGTAAAAGAAGATAGATGTATATTGATCACCTTAGT
510 TAGAAGCCTATAAGTATTGGAAGATTAAGAGTTAAGGGAGATAGATGTATATCAACCACCTTAGT
* * * *
8944586 ATTCAGATCTGAAAGGTAGTCAGAGAAGACGAGGTGATGAT-GAAAAAGTTGT
575 ATTCAAATCTAAAAGGTAGTCAGA-TAGACGAGGTGATGATGGAAAAAGTTGC
* * * * * *
8944638 AA-AAAAACATCA-ATTAGCTCAAGTATGAAGAAAGTG-AGCAAAATGATATGTTAGAAAATATG
1 AAGAAGAA-AT-AGGTTAGCTAAAGTATGAAGAAAGTGTA-CAAAA-GATATGCTAAAAAAGATG
* * *
8944700 ACAAAGGAAAGAGACTTGGCTCGAAGTGACCTCAAAGAGCTACACTT-AAAAACCAATGATTAAG
62 ACAAAGGAAAAAGACTTGGCTTGAAATGACCTCAAAGAGCTACACTTAAAAAACCAATGATTAAG
* * * ** * * *
8944764 GGCTTAGTTAAAAAACAAGGTAAAGGAAAGTAAAAATCAAGATGAGGTAGAGCAAC-TTCGAGAA
127 GGCTTAGTTAAAAGATAAGGTAAAGGAAAGTAAACATCAAGACAAGATAGAGCAACTTTAG-GAT
* * * * * * * * *
8944828 GAAGTTCATTTCTAAAGGTGTAGGACTTGTGATAGCAAAGACAAAATCAACATGACAATACGAGA
191 GAAGTTCATTTCTAGAGGCGTAGGGCTTGGGATAGCGATGACAAAATCAACGTGACAGTATGAGA
*
8944893 AAAGAAAGATTCACACAAAGCCCTCACAACACACAAAAGGGAATTAAGCAAGACTCAAGAAG-GA
256 AAAGAAAGATT--CACAAAGCCCTCACAACACACAAAAGGGAATTAAGCAAGACTCAGGAAGAGA
* * * * * * * * * ***
8944957 ATGAAAAATTGAAAGAATAGTTGAGCTGTGAGAAGATAAG-CTGTTTGGATACTC-ATGGGGCAA
319 ATGAAGAATTGAAGGAAGAGTTGAGATGTGAGAAAAAAAGAC-GTCTAGATACTCAAAGGAAAAA
* * * * * * * **
8945020 AATGCACTTAGAAAAGAAATCAAGGCTACAAAGATGCAGTTGCAAGAAAATAAGGATTACATTGT
383 AATGCACTTGGAATAGAAATCAAGGCCATAGAGATGCAGTTGCAAGAAAACAAGGATTGCATTAC
* * * * * *
8945085 TCACTTATATAGGGAATGGCAAGAAAAGGAGGTTGAATGGAAACAAGTTTGCAACCAAGAGATAG
448 TCACCTACACAAGGAATGGCAAGAAAAAGAGGTTGAATGGAAACAAGTTTGCAACCAAGAGGTAG
* * * * *
8945150 AAGCCTATAAGTATTGGAAGATTAGGAATTAGGGGAGATAGATGTACATCAACCACCTTAGTACT
513 AAGCCTATAAGTATTGGAAGATTAAGAGTTAAGGGAGATAGATGTATATCAACCACCTTAGTATT
* * * * *
8945215 C-AGTTTCAAAAGATAGTCAGATAGAGTGAGGTGATGATGGAAAAGGTTGC
578 CAAATCT-AAAAGGTAGTCAGATAGA-CGAGGTGATGATGGAAAAAGTTGC
* * * *
8945265 AATAGGAAATAGGTTGGCTCAAA-TATGAAGAAGGTGTACAAAAAGATATGCTAGAAAAA-ATGA
1 AAGAAGAAATAGGTTAGCT-AAAGTATGAAGAAAGTGTAC-AAAAGATATGCTA-AAAAAGATGA
* * * * *
8945328 TAAAGGAAAAAGACTTGGCTT-AAAGTGACATCAAAGA-TTACATTTAAAAAACCAACGATT-AG
63 CAAAGGAAAAAGACTTGGCTTGAAA-TGACCTCAAAGAGCTACACTTAAAAAACCAATGATTAAG
* * * * * * * *
8945390 AGCTCAGTTAAAAGACAAGGTAAAAGAAAGTAAAGATC-GGTACGAGATAGGGCAACTTT-GAGA
127 GGCTTAGTTAAAAGATAAGGTAAAGGAAAGTAAACATCAAG-ACAAGATAGAGCAACTTTAG-GA
** * * * * * * *
8945453 TGGTGTTCATTTAT-GAAGCCATAGGGCTTAGGATAGCAATGACAAAATCAATGTGACAATATGA
190 TGAAGTTCATTTCTAG-AGGCGTAGGGCTTGGGATAGCGATGACAAAATCAACGTGACAGTATGA
* * ** * *
8945517 GAAAAAAAAGATTCATACAAAGCCGTCACAGTACCCAAAAGGGAATTAAGCAAGACTTAGGAAGA
254 GAAAAGAAAGATTC--ACAAAGCCCTCACAACACACAAAAGGGAATTAAGCAAGACTCAGGAAGA
* * * * *
8945582 GAATGAAGAATTGAAGGAAGAGTTAAGATATAAGAAAAAAAGATGTCTAGATACTCGAAAAGAAA
317 GAATGAAGAATTGAAGGAAGAGTTGAGATGTGAGAAAAAAAGACGTCTAGATACTC-AAAGGAAA
** * * *
8945647 AGGATGCACTTGGAATAGAAATCAGGGCCATAGAGATGCAGTTGCAAGAAAACTAGGATTACATT
381 AAAATGCACTTGGAATAGAAATCAAGGCCATAGAGATGCAGTTGCAAGAAAACAAGGATTGCATT
* * ** * * * * *
8945712 ACTTACCTACATAAATAATGGTAAGAAAAAAAGGTTGAATGGAAAAAAGTTTACAA-CTAGAGGT
446 ACTCACCTACACAAGGAATGGCAAGAAAAAGAGGTTGAATGGAAACAAGTTTGCAACCAAGAGGT
* * * *
8945776 AGAAGCCCACAAGTATTGGAAGACTAAGAGTTAAAGGAGATAGATGTATATCAACCACCTTAGTA
511 AGAAGCCTATAAGTATTGGAAGATTAAGAGTTAAGGGAGATAGATGTATATCAACCACCTTAGTA
* * * * * *
8945841 TTCAAATCTGAAAGGTAGTTACATAGACGATGTGATGATGGAAAAAGCTAC
576 TTCAAATCTAAAAGGTAGTCAGATAGACGAGGTGATGATGGAAAAAGTTGC
* * *
8945892 AAGAGGAAATAAGTTAGCTAAAGTATGAAGTAAGTGTACAAAAGCATATGCTAAAAAAGATGACA
1 AAGAAGAAATAGGTTAGCTAAAGTATGAAGAAAGTGTACAAAAG-ATATGCTAAAAAAGATGACA
* * * ** *
8945957 AAAGAAAGAGACTTGGCTTGAAATGACCTCAAAGAGCTAAACTTAGAAAAACCAATGGCTAAAGG
65 AAGGAAAAAGACTTGGCTTGAAATGACCTCAAAGAGCTACACTTA-AAAAACCAATGATTAAGGG
* * * *
8946022 CTTAGTTAAAAAATGAGGTAAAGGAAAGTAGAA-ATCAAGACAAGATAGAACAGCTTTAGGATGA
129 CTTAGTTAAAAGATAAGGTAAAGGAAAGTA-AACATCAAGACAAGATAGAGCAACTTTAGGATGA
** * * *
8946086 AGTTCATTTCTAGAGGCGTAGGGCTTGGGATAGCGATGACAAAATTTATGTAATAGTATGA-AAA
193 AGTTCATTTCTAGAGGCGTAGGGCTTGGGATAGCGATGACAAAATCAACGTGACAGTATGAGAAA
* * * *
8946150 AGAAATATTCACAAAGCCCCCACAACACACAAAAGGGAATTAAGTAAGATTCAGGAA-AGAATGA
258 AGAAAGATTCACAAAGCCCTCACAACACACAAAAGGGAATTAAGCAAGACTCAGGAAGAGAATGA
* * * *
8946214 AGAATTGAAGGAAGAGTTGATATGTGAGAAGAAAAGGCATCTAGATACTCAAAGGGAAAAAAATG
323 AGAATTGAAGGAAGAGTTGAGATGTGAGAAAAAAAGACGTCTAGATACTCAAA-GGAAAAAAATG
* * * * * **
8946279 CACTTGGAATAGAAATTAAAG-CTTAGAGATGTAGTTGTAAGAAAACAAGGATTGCGCTACTCGA
387 CACTTGGAATAGAAATCAAGGCCATAGAGATGCAGTTGCAAGAAAACAAGGATTGCATTACTC-A
* * * * * *
8946343 -TTACACAGGGAATGCCAAGAAAATGAGGTTGAATGGAAACAAGTTTGCAACTAAGAGGTAAAAG
451 CCTACACAAGGAATGGCAAGAAAAAGAGGTTGAATGGAAACAAGTTTGCAACCAAGAGGTAGAAG
* * ** * * * *
8946407 CCCACAAGTATTAAAAGATT-AGAAATT-AGGGAAGACAAATGTATATTAACCACCTTAGT-TTA
516 CCTATAAGTATTGGAAGATTAAG-AGTTAAGGG-AGATAGATGTATATCAACCACCTTAGTATT-
* * * * *
8946469 TAAATCTAAAAGGTAGTCAGACAGGCTGATGTGATGATGGAAAATGTTGC
578 CAAATCTAAAAGGTAGTCAGATAGAC-GAGGTGATGATGGAAAAAGTTGC
* * * * * * * * * *
8946519 AAAAAGAAATAGGTTAGTTCAAA-TATGAAGAAATTATGCACAATGTTATGCT-AGAAAGATAAA
1 AAGAAGAAATAGGTTAGCT-AAAGTATGAAGAAAGTGTACA-AAAGATATGCTAAAAAAGATGAC
* * * * * ** *
8946582 AAAAGAAAAAGACTTGGCTCGAAGTGACCTTAAAGAGCTACACTTTAAAAATAAATTATTAAGGG
64 AAAGGAAAAAGACTTGGCTTGAAATGACCTCAAAGAGCTACACTTAAAAAACCAATGATTAAGGG
* * * * * *
8946647 CTCAGTTAAAAGATAAGGTAAAGAAAAGTAAATATCGAGATGAA-ATAGAGCAACTTCAGGATGA
129 CTTAGTTAAAAGATAAGGTAAAGGAAAGTAAACATCAAGA-CAAGATAGAGCAACTTTAGGATGA
* * * * * * * *
8946711 AGTT-GTTTCTGGAGACGTAAGGCTTGGGATAGTGATGATAAAATCAACGTGATAGTATAAGAAA
193 AGTTCATTTCTAGAGGCGTAGGGCTTGGGATAGCGATGACAAAATCAACGTGACAGTATGAGAAA
* * * * * * * *
8946775 AGAAATATTCATACAAAACCCTCATAACATATAAAAAGGAATTAAACAAGACTCAAGAAGAGAAT
258 AGAAAGATTC--ACAAAGCCCTCACAACACACAAAAGGGAATTAAGCAAGACTCAGGAAGAGAAT
* * * * * * *
8946840 TAAGAATTGAAAGAAGAGTTGAGATGTGA-AAAGCAAAGGCATATAGATATTCAAAGAGAAAAAA
321 GAAGAATTGAAGGAAGAGTTGAGATGTGAGAAA-AAAAGACGTCTAGATACTCAAAG-GAAAAAA
* * * * * * *
8946904 ATGCACTTGGAATAGAAATCAAAGCTATAGAGATGAAATTGCAAGGAAACATGGATTGCATTGCT
384 ATGCACTTGGAATAGAAATCAAGGCCATAGAGATGCAGTTGCAAGAAAACAAGGATTGCATTACT
* * * *
8946969 CACCTACACAAAGAGTGGTAAG--AAAGAGGTTGAATGGAAACAAGTTTGCAACCAAAAGGTAGA
449 CACCTACACAAGGAATGGCAAGAAAAAGAGGTTGAATGGAAACAAGTTTGCAACCAAGAGGTAGA
* * * ** * * * *
8947032 AACCTGTAAGTATTGGAATATTGGGAGTCAGGGGAGACAAATGTATATCAACCACCTTAGTA
514 AGCCTATAAGTATTGGAAGATTAAGAGTTAAGGGAGATAGATGTATATCAACCACCTTAGTA
8947094 CTCATATTTG
Statistics
Matches: 1983, Mismatches: 405, Indels: 136
0.79 0.16 0.05
Matches are distributed among these distances:
624 48 0.02
625 178 0.09
626 550 0.28
627 525 0.26
628 405 0.20
629 176 0.09
630 96 0.05
631 5 0.00
ACGTcount: A:0.45, C:0.11, G:0.23, T:0.21
Consensus pattern (626 bp):
AAGAAGAAATAGGTTAGCTAAAGTATGAAGAAAGTGTACAAAAGATATGCTAAAAAAGATGACAA
AGGAAAAAGACTTGGCTTGAAATGACCTCAAAGAGCTACACTTAAAAAACCAATGATTAAGGGCT
TAGTTAAAAGATAAGGTAAAGGAAAGTAAACATCAAGACAAGATAGAGCAACTTTAGGATGAAGT
TCATTTCTAGAGGCGTAGGGCTTGGGATAGCGATGACAAAATCAACGTGACAGTATGAGAAAAGA
AAGATTCACAAAGCCCTCACAACACACAAAAGGGAATTAAGCAAGACTCAGGAAGAGAATGAAGA
ATTGAAGGAAGAGTTGAGATGTGAGAAAAAAAGACGTCTAGATACTCAAAGGAAAAAAATGCACT
TGGAATAGAAATCAAGGCCATAGAGATGCAGTTGCAAGAAAACAAGGATTGCATTACTCACCTAC
ACAAGGAATGGCAAGAAAAAGAGGTTGAATGGAAACAAGTTTGCAACCAAGAGGTAGAAGCCTAT
AAGTATTGGAAGATTAAGAGTTAAGGGAGATAGATGTATATCAACCACCTTAGTATTCAAATCTA
AAAGGTAGTCAGATAGACGAGGTGATGATGGAAAAAGTTGC
Done.