Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14313602
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 50000 characters in sequence are not A, C, G, or T
File 45 of 74
Found at i:9186972 original size:33 final size:33
Alignment explanation
Indices: 9186930--9186996 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
9186920 ATTGTAGTAA
*
9186930 ATTAATGTAATCAATTTGAAAAAGAAGAAACTT
1 ATTAATGTAATCAATTTGAAAAAGAAAAAACTT
9186963 ATTAATGTAATCAATTTGAAAAAGAAAAAACTT
1 ATTAATGTAATCAATTTGAAAAAGAAAAAACTT
9186996 A
1 A
9186997 GGCAAGGCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.54, C:0.06, G:0.10, T:0.30
Consensus pattern (33 bp):
ATTAATGTAATCAATTTGAAAAAGAAAAAACTT
Found at i:9188559 original size:25 final size:25
Alignment explanation
Indices: 9188529--9188607 Score: 108
Period size: 25 Copynumber: 3.2 Consensus size: 25
9188519 GTAAATCCTA
*
9188529 GATAATTATTTTAATTTAATTATGT
1 GATAATTATTTTAATTTAATTATCT
* *
9188554 GATAATTATTTTGATTTTATTATCT
1 GATAATTATTTTAATTTAATTATCT
*
9188579 G-TAAGT-TTTTAATTTAATTATCT
1 GATAATTATTTTAATTTAATTATCT
9188602 GATAAT
1 GATAAT
9188608 GAGATAATTC
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
23 16 0.35
24 7 0.15
25 23 0.50
ACGTcount: A:0.33, C:0.03, G:0.09, T:0.56
Consensus pattern (25 bp):
GATAATTATTTTAATTTAATTATCT
Found at i:9189104 original size:30 final size:29
Alignment explanation
Indices: 9189070--9189244 Score: 124
Period size: 30 Copynumber: 5.9 Consensus size: 29
9189060 CAAAATCCTA
*
9189070 TCCAAAGAGTCTCAGTTCCATCAAAACTCT
1 TCCAAAGAGTCTCAGTTCCACCAAAACT-T
9189100 TCCAAAGAGTCTCAGTTCCACCAAAACTT
1 TCCAAAGAGTCTCAGTTCCACCAAAACTT
* * *
9189129 TCCCAAAGAGTCCTC-GTTTCACTAAAACTC
1 T-CCAAAGAGT-CTCAGTTCCACCAAAACTT
* * * * *
9189159 TCTAAAAAAGT-TCTAGTTTCACTAAAACTC
1 TC-CAAAGAGTCTC-AGTTCCACCAAAACTT
* * *
9189189 TCCTAAAGAGT-TCTAGTTTCACTAAAACTC
1 TCC-AAAGAGTCTC-AGTTCCACCAAAACTT
*
9189219 TCCTAAAGAGT-TCTAGTTTCACCAAA
1 TCC-AAAGAGTCTC-AGTTCCACCAAA
9189245 TTTGTTTGAA
Statistics
Matches: 130, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
28 2 0.02
29 3 0.02
30 122 0.94
31 3 0.02
ACGTcount: A:0.34, C:0.27, G:0.10, T:0.29
Consensus pattern (29 bp):
TCCAAAGAGTCTCAGTTCCACCAAAACTT
Found at i:9189156 original size:60 final size:58
Alignment explanation
Indices: 9189071--9189244 Score: 190
Period size: 60 Copynumber: 2.9 Consensus size: 58
9189061 AAAATCCTAT
* * *
9189071 CCAAAGAGTCTCAGTTCCA-TCAAAACTCTTCCAAAGAG-TCTCAGTTCCACCAAAACTTTC
1 CCAAAGAGTCTC-GTTTCACT-AAAACTC-TCCAAAGAGTTCT-AGTTTCACCAAAACTCTC
* * *
9189131 CCAAAGAGTCCTCGTTTCACTAAAACTCTCTAAAAAAGTTCTAGTTTCACTAAAACTCTC
1 CCAAAGAGT-CTCGTTTCACTAAAACTCTC-CAAAGAGTTCTAGTTTCACCAAAACTCTC
* *
9189191 CTAAAGAGTTCTAGTTTCACTAAAACTCTCCTAAAGAGTTCTAGTTTCACCAAA
1 CCAAAGAG-TCTCGTTTCACTAAAACTCTCC-AAAGAGTTCTAGTTTCACCAAA
9189245 TTTGTTTGAA
Statistics
Matches: 97, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
59 2 0.02
60 87 0.90
61 8 0.08
ACGTcount: A:0.34, C:0.27, G:0.10, T:0.29
Consensus pattern (58 bp):
CCAAAGAGTCTCGTTTCACTAAAACTCTCCAAAGAGTTCTAGTTTCACCAAAACTCTC
Found at i:9192233 original size:34 final size:32
Alignment explanation
Indices: 9192159--9192233 Score: 78
Period size: 34 Copynumber: 2.2 Consensus size: 32
9192149 TTAATTCATT
* *
9192159 TTCATTTTCATTTTTTTCCTTTTTAAAAAAAA
1 TTCATTTTCATTATTTTACTTTTTAAAAAAAA
* * *
9192191 TATTATTTTCTATTATTTTATTTTTTAAAGATAAA
1 T-TCATTTTC-ATTATTTTACTTTTTAAA-AAAAA
9192226 TTCATTTT
1 TTCATTTT
9192234 ATTTAAGAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
32 1 0.03
33 7 0.21
34 21 0.62
35 5 0.15
ACGTcount: A:0.31, C:0.08, G:0.01, T:0.60
Consensus pattern (32 bp):
TTCATTTTCATTATTTTACTTTTTAAAAAAAA
Found at i:9192777 original size:3 final size:3
Alignment explanation
Indices: 9192771--9192802 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
9192761 AAAAACTAAA
*
9192771 AAT AAT AAT AAT AAT AAT AAT GAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
9192803 GATTAAAAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:9192839 original size:16 final size:18
Alignment explanation
Indices: 9192818--9192852 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
9192808 AAAGTATATT
9192818 AAAATTA-AAAAAA-TAA
1 AAAATTAGAAAAAACTAA
9192834 AAAATTAGAAAAAACTAA
1 AAAATTAGAAAAAACTAA
9192852 A
1 A
9192853 TAATAAAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 6 0.35
18 4 0.24
ACGTcount: A:0.77, C:0.03, G:0.03, T:0.17
Consensus pattern (18 bp):
AAAATTAGAAAAAACTAA
Found at i:9195461 original size:15 final size:17
Alignment explanation
Indices: 9195440--9195479 Score: 57
Period size: 15 Copynumber: 2.5 Consensus size: 17
9195430 ATGAACCATC
*
9195440 CTTTTTTTC-AAGAATT
1 CTTTTTTTCAAAAAATT
9195456 -TTTTTTTCAAAAAATT
1 CTTTTTTTCAAAAAATT
9195472 CTTTTTTT
1 CTTTTTTT
9195480 TATTTTCTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 8 0.38
16 6 0.29
17 7 0.33
ACGTcount: A:0.25, C:0.10, G:0.03, T:0.62
Consensus pattern (17 bp):
CTTTTTTTCAAAAAATT
Found at i:9195709 original size:13 final size:14
Alignment explanation
Indices: 9195678--9195711 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
9195668 TGGAAAAAAA
9195678 AAATTTTTTTTTGT
1 AAATTTTTTTTTGT
*
9195692 GAATTTTTTTTT-T
1 AAATTTTTTTTTGT
9195705 AAATTTT
1 AAATTTT
9195712 GGTAGTAGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.71
Consensus pattern (14 bp):
AAATTTTTTTTTGT
Found at i:9196141 original size:14 final size:14
Alignment explanation
Indices: 9196124--9196156 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
9196114 TATTAAGGAT
9196124 AATATATACAAATA
1 AATATATACAAATA
*
9196138 AATATATATAAATA
1 AATATATACAAATA
9196152 AATAT
1 AATAT
9196157 TGAACAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (14 bp):
AATATATACAAATA
Found at i:9202085 original size:21 final size:22
Alignment explanation
Indices: 9202045--9202086 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
9202035 TGTTTAAAGA
* *
9202045 TTTAATTTTCAAGTTTTATTTT
1 TTTAATTTTAAAGGTTTATTTT
9202067 TTTAA-TTTAAAGGTTTATTT
1 TTTAATTTTAAAGGTTTATTT
9202087 ACTTTCTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.26, C:0.02, G:0.07, T:0.64
Consensus pattern (22 bp):
TTTAATTTTAAAGGTTTATTTT
Found at i:9202883 original size:19 final size:18
Alignment explanation
Indices: 9202861--9202912 Score: 61
Period size: 19 Copynumber: 2.9 Consensus size: 18
9202851 AATATTAACC
*
9202861 AATATATAAAAATATATA
1 AATATATAAAAATAAATA
*
9202879 GAATATATATAAATAAATA
1 -AATATATAAAAATAAATA
*
9202898 ATTAT-TAAAAATAAA
1 AATATATAAAAATAAA
9202913 ATAAGCCTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
17 9 0.31
18 4 0.14
19 16 0.55
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (18 bp):
AATATATAAAAATAAATA
Found at i:9204758 original size:15 final size:15
Alignment explanation
Indices: 9204738--9204767 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9204728 AATCAACAGA
9204738 ATTAAATTTTGATTT
1 ATTAAATTTTGATTT
*
9204753 ATTAAATTTTTATTT
1 ATTAAATTTTGATTT
9204768 TTTATTGTCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (15 bp):
ATTAAATTTTGATTT
Found at i:9207058 original size:10 final size:10
Alignment explanation
Indices: 9207032--9207082 Score: 52
Period size: 10 Copynumber: 5.2 Consensus size: 10
9207022 TTTCTCATTA
9207032 AAAAATAT-T
1 AAAAATATAT
*
9207041 AACCAATATAT
1 AA-AAATATAT
9207052 AAAAATATAT
1 AAAAATATAT
*
9207062 -AGAATATAT
1 AAAAATATAT
*
9207071 AAAAATAAAT
1 AAAAATATAT
9207081 AA
1 AA
9207083 TTATTAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
9 10 0.29
10 21 0.62
11 3 0.09
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (10 bp):
AAAAATATAT
Found at i:9207092 original size:17 final size:19
Alignment explanation
Indices: 9207045--9207096 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 19
9207035 AATATTAACC
*
9207045 AATATATAAAAATATATAG
1 AATATATAAAAATAAATAG
9207064 AATATATAAAAATAAATA-
1 AATATATAAAAATAAATAG
*
9207082 ATTAT-TAAAAATAAA
1 AATATATAAAAATAAA
9207097 ATAAGCCTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.32
18 4 0.13
19 17 0.55
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (19 bp):
AATATATAAAAATAAATAG
Found at i:9213640 original size:146 final size:146
Alignment explanation
Indices: 9213366--9213647 Score: 451
Period size: 146 Copynumber: 1.9 Consensus size: 146
9213356 TGGAGAGTTG
* *
9213366 AGGGAAAAGTGAACATATGAAGTCAATTATGTCTTTGAGTTAAGATGTAATGAAATGTTTTACAT
1 AGGGAAAAGCGAACATATGAAGTCAATTATGTCTTTAAGTTAAGATGTAATGAAATGTTTTACAT
* * *
9213431 TCTTTTTACTTGAGTTATATGCATGAATTAAAGATTGAATAAATCTATATGTATAAAGAACATAA
66 TCCTTTTACATGAGTTATATGCATGAACTAAAGATTGAATAAATCTATATGTATAAAGAACATAA
9213496 GATATTGTTGAGAAGA
131 GATATTGTTGAGAAGA
* * *
9213512 AGGGGAAAGCGAACATATGAAGTCGATTTTGTCTTTAAGTTGAA-ATGTAATGAAATGTTTTACA
1 AGGGAAAAGCGAACATATGAAGTCAATTATGTCTTTAAGTT-AAGATGTAATGAAATGTTTTACA
*
9213576 TTCCTTTTACATGAGTTATATGCATGAACTAAAGATTGAATAAAT-TCATATGTATGAAGAACAT
65 TTCCTTTTACATGAGTTATATGCATGAACTAAAGATTGAATAAATCT-ATATGTATAAAGAACAT
9213640 AAGATATT
129 AAGATATT
9213648 AGGAGCTTAT
Statistics
Matches: 125, Mismatches: 9, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
145 1 0.01
146 122 0.98
147 2 0.02
ACGTcount: A:0.39, C:0.07, G:0.18, T:0.35
Consensus pattern (146 bp):
AGGGAAAAGCGAACATATGAAGTCAATTATGTCTTTAAGTTAAGATGTAATGAAATGTTTTACAT
TCCTTTTACATGAGTTATATGCATGAACTAAAGATTGAATAAATCTATATGTATAAAGAACATAA
GATATTGTTGAGAAGA
Found at i:9221867 original size:15 final size:15
Alignment explanation
Indices: 9221847--9221876 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
9221837 TTTAGGCACA
9221847 ACAACAAGCTTAGAG
1 ACAACAAGCTTAGAG
9221862 ACAACAAGCTTAGAG
1 ACAACAAGCTTAGAG
9221877 TTTCTAAGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.20, G:0.20, T:0.13
Consensus pattern (15 bp):
ACAACAAGCTTAGAG
Found at i:9222382 original size:59 final size:59
Alignment explanation
Indices: 9222286--9222406 Score: 179
Period size: 59 Copynumber: 2.1 Consensus size: 59
9222276 CAAAGAAAGA
* * *
9222286 AAAATAGATCATAAGACCTAAAATTGGTCTTACGTGAGGCATTTGATTGTCAATATTTC
1 AAAATAGATCATAAGACCTAAAATTGCTATTACGTGAGGCACTTGATTGTCAATATTTC
* * * *
9222345 AAAATAGATCATAAGACTTGAAATTGCTATTATGTGAGGCACTTGATTTTCAATATTTC
1 AAAATAGATCATAAGACCTAAAATTGCTATTACGTGAGGCACTTGATTGTCAATATTTC
9222404 AAA
1 AAA
9222407 CAATATACAA
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
59 55 1.00
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (59 bp):
AAAATAGATCATAAGACCTAAAATTGCTATTACGTGAGGCACTTGATTGTCAATATTTC
Found at i:9227233 original size:3 final size:3
Alignment explanation
Indices: 9227225--9227262 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
9227215 TCCTAAACCC
9227225 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
9227263 GATTAGACAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:9230133 original size:38 final size:38
Alignment explanation
Indices: 9230091--9230167 Score: 129
Period size: 38 Copynumber: 2.0 Consensus size: 38
9230081 TAAACAATGC
*
9230091 ATGGCAAAACTCC-CCATCTATTTATGCATCCTAATCCA
1 ATGGCAAAACTCCTCC-TCAATTTATGCATCCTAATCCA
9230129 ATGGCAAAACTCCTCCTCAATTTATGCATCCTAATCCA
1 ATGGCAAAACTCCTCCTCAATTTATGCATCCTAATCCA
9230167 A
1 A
9230168 CACAACTCAA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
38 35 0.95
39 2 0.05
ACGTcount: A:0.32, C:0.31, G:0.08, T:0.29
Consensus pattern (38 bp):
ATGGCAAAACTCCTCCTCAATTTATGCATCCTAATCCA
Found at i:9236863 original size:34 final size:34
Alignment explanation
Indices: 9236821--9236887 Score: 84
Period size: 34 Copynumber: 1.9 Consensus size: 34
9236811 AGTAAATAAC
*
9236821 ATAATTAAAAT-TAAAATTTGAT-AAATTTAAAAA
1 ATAATTAAAATGT-AAATTGGATAAAATTTAAAAA
9236854 ATAACTTAAAATGTAAATTGGATGAAAATTTAAA
1 ATAA-TTAAAATGTAAATTGGAT-AAAATTTAAA
9236888 GAACAAATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
33 4 0.14
34 15 0.52
35 1 0.03
36 9 0.31
ACGTcount: A:0.57, C:0.01, G:0.07, T:0.34
Consensus pattern (34 bp):
ATAATTAAAATGTAAATTGGATAAAATTTAAAAA
Found at i:9236999 original size:16 final size:16
Alignment explanation
Indices: 9236978--9237011 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9236968 ATTGCAAGTG
**
9236978 AACTTAAATTGCAAAA
1 AACTTAAAGAGCAAAA
9236994 AACTTAAAGAGCAAAA
1 AACTTAAAGAGCAAAA
9237010 AA
1 AA
9237012 GTAAACATGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.12, G:0.09, T:0.18
Consensus pattern (16 bp):
AACTTAAAGAGCAAAA
Found at i:9237559 original size:20 final size:20
Alignment explanation
Indices: 9237526--9237577 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
9237516 TGCCTTGTGG
* *
9237526 TCAAACTTGGTCAAATAAAT
1 TCAAACTAGATCAAATAAAT
*
9237546 TCGAACTAGATCAAATAAAT
1 TCAAACTAGATCAAATAAAT
9237566 TCAAACTAGATC
1 TCAAACTAGATC
9237578 GAACTCAGGT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.46, C:0.17, G:0.10, T:0.27
Consensus pattern (20 bp):
TCAAACTAGATCAAATAAAT
Found at i:9238089 original size:143 final size:144
Alignment explanation
Indices: 9237786--9238163 Score: 369
Period size: 143 Copynumber: 2.6 Consensus size: 144
9237776 CATCAAATTA
* ** ** * * * * *
9237786 TGATTTTTGATATATTAAAAATCTTGATCATATTTTGAAATGTGTGAAATTATCAAAATAGCTTT
1 TGATTTTTGATCTATTAAAAATCTTGATCGCACCTCGAAAGGTGTAAAATTATCAAAATAACATT
* * **
9237851 TAAGGGTATCTTTTTAACTTGATCTTTTCGAGGTCAATTTTTTGTAAAAGGCTTTAAATTATGTT
66 TAAGGGTATCTTTATAACTTGATCTTTTCGAGGTCAATTTTTTGGAAAAGGCTTTAAACCATGTT
9237916 TTAATATTATTTTG
131 TTAATATTATTTTG
* *
9237930 TGATTTTTGATGTATTAAAAAAT-TTGATCGCACCTCGAAAGGTGTAAAATTATGAAAATAACAT
1 TGATTTTTGATCTATT-AAAAATCTTGATCGCACCTCGAAAGGTGTAAAATTATCAAAATAACAT
* ** *
9237994 TTAAGGGTAT-TTTCAT-ATTTGATCTTTTTTAGGTTAATTTTTTGCGAAAA-GCTTTAAACCAT
65 TTAAGGGTATCTTT-ATAACTTGATCTTTTCGAGGTCAATTTTTTG-GAAAAGGCTTTAAACCAT
9238056 GTTTTAATATTA-TTTG
128 GTTTTAATATTATTTTG
** * * * **
9238072 ATGATTTTT-AGTCTATTAAAAATCTTGATCATACCTTGGAAA-GTGTGAAGTTATCAAAATGTC
1 -TGATTTTTGA-TCTATTAAAAATCTTGATCGCACC-TCGAAAGGTGTAAAATTATCAAAATAAC
*
9238135 ATTT-AGAAGTAT-TTTCATAACTTGATCTT
63 ATTTAAG-GGTATCTTT-ATAACTTGATCTT
9238164 ATCAAGGTTG
Statistics
Matches: 195, Mismatches: 30, Indels: 18
0.80 0.12 0.07
Matches are distributed among these distances:
142 13 0.07
143 101 0.52
144 75 0.38
145 6 0.03
ACGTcount: A:0.33, C:0.08, G:0.14, T:0.45
Consensus pattern (144 bp):
TGATTTTTGATCTATTAAAAATCTTGATCGCACCTCGAAAGGTGTAAAATTATCAAAATAACATT
TAAGGGTATCTTTATAACTTGATCTTTTCGAGGTCAATTTTTTGGAAAAGGCTTTAAACCATGTT
TTAATATTATTTTG
Found at i:9239834 original size:18 final size:18
Alignment explanation
Indices: 9239780--9239836 Score: 62
Period size: 19 Copynumber: 3.1 Consensus size: 18
9239770 AACTAAACTA
*
9239780 AACCCT-AAACCCTAGCCC
1 AACCCTGAAA-CCTAGACC
9239798 AACCCTGAAACCTTAGACC
1 AACCCTGAAACC-TAGACC
* *
9239817 AATCCTGAATCCTAGACC
1 AACCCTGAAACCTAGACC
9239835 AA
1 AA
9239837 ACGTCAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
18 16 0.47
19 18 0.53
ACGTcount: A:0.37, C:0.39, G:0.09, T:0.16
Consensus pattern (18 bp):
AACCCTGAAACCTAGACC
Found at i:9239857 original size:20 final size:19
Alignment explanation
Indices: 9239827--9239877 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
9239817 AATCCTGAAT
* *
9239827 CCTAGACCAAACGTCAAAAC
1 CCTAAACCAAACATC-AAAC
* *
9239847 TCTAAACCAAATATCAAAC
1 CCTAAACCAAACATCAAAC
9239866 CCTAAACCAAAC
1 CCTAAACCAAAC
9239878 CTTTAACTCT
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
19 14 0.56
20 11 0.44
ACGTcount: A:0.49, C:0.33, G:0.04, T:0.14
Consensus pattern (19 bp):
CCTAAACCAAACATCAAAC
Found at i:9239931 original size:15 final size:14
Alignment explanation
Indices: 9239908--9239938 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
9239898 ACTAAATCTA
9239908 AAACCTTAAACCTT
1 AAACCTTAAACCTT
9239922 AAACCTTTAAACCTT
1 AAACC-TTAAACCTT
9239937 AA
1 AA
9239939 CTAAATCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.29
Consensus pattern (14 bp):
AAACCTTAAACCTT
Found at i:9239950 original size:7 final size:7
Alignment explanation
Indices: 9239908--9239938 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
9239898 ACTAAATCTA
9239908 AAACCTT
1 AAACCTT
9239915 AAACCTT
1 AAACCTT
9239922 AAACCTTT
1 AAACC-TT
9239930 AAACCTT
1 AAACCTT
9239937 AA
1 AA
9239939 CTAAATCTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 16 0.70
8 7 0.30
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.29
Consensus pattern (7 bp):
AAACCTT
Found at i:9239970 original size:20 final size:20
Alignment explanation
Indices: 9239945--9239984 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
9239935 TTAACTAAAT
*
9239945 CTTAAACCCTAAATCAAACC
1 CTTAAACCCAAAATCAAACC
9239965 CTTAAACCCAAAATCAAACC
1 CTTAAACCCAAAATCAAACC
9239985 ACCATGTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.47, C:0.35, G:0.00, T:0.17
Consensus pattern (20 bp):
CTTAAACCCAAAATCAAACC
Found at i:9240414 original size:21 final size:23
Alignment explanation
Indices: 9240385--9240426 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
9240375 ATATATTGTT
9240385 TTTGCTTTCAA-A-ATAAAATGA
1 TTTGCTTTCAAGACATAAAATGA
*
9240406 TTTGTTTTCAAGACATAAAAT
1 TTTGCTTTCAAGACATAAAAT
9240427 TTGGAAAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 10 0.56
22 1 0.06
23 7 0.39
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (23 bp):
TTTGCTTTCAAGACATAAAATGA
Found at i:9244011 original size:17 final size:15
Alignment explanation
Indices: 9243981--9244016 Score: 54
Period size: 17 Copynumber: 2.3 Consensus size: 15
9243971 TTCTCTCTGT
9243981 TTCTTCTCTTCTTCC
1 TTCTTCTCTTCTTCC
9243996 TTCTTCTCTATTCTTCC
1 TTCTTCTC--TTCTTCC
9244013 TTCT
1 TTCT
9244017 CTTTTCTGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 8 0.42
17 11 0.58
ACGTcount: A:0.03, C:0.36, G:0.00, T:0.61
Consensus pattern (15 bp):
TTCTTCTCTTCTTCC
Found at i:9244683 original size:24 final size:22
Alignment explanation
Indices: 9244654--9244712 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 22
9244644 ATTCAAAAGC
9244654 TTTTTTTAATTTATTTATATTATA
1 TTTTTTT-ATTTATTTATATT-TA
*
9244678 TTTTTTTATTTATTTTTATTTA
1 TTTTTTTATTTATTTATATTTA
9244700 TGTTTTGTTATTT
1 T-TTTT-TTATTT
9244713 GATAAAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
22 3 0.09
23 16 0.50
24 13 0.41
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.76
Consensus pattern (22 bp):
TTTTTTTATTTATTTATATTTA
Found at i:9246308 original size:17 final size:17
Alignment explanation
Indices: 9246286--9246337 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
9246276 AACATGTATG
9246286 ATTTTTATTTTTAAATA
1 ATTTTTATTTTTAAATA
** *
9246303 ATTTTTA-AATAAAATA
1 ATTTTTATTTTTAAATA
9246319 ATATTTTATTTTT-AATA
1 AT-TTTTATTTTTAAATA
9246336 AT
1 AT
9246338 ACCAAATATA
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
16 8 0.30
17 18 0.67
18 1 0.04
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
ATTTTTATTTTTAAATA
Found at i:9254637 original size:24 final size:23
Alignment explanation
Indices: 9254591--9254638 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
9254581 AATAATCGTA
*
9254591 AAATATTAAAAAGTAAAAGTTTT
1 AAATATTAAAAAATAAAAGTTTT
* *
9254614 AAATATTTAAAAAATATAATTTTT
1 AAATA-TTAAAAAATAAAAGTTTT
9254638 A
1 A
9254639 GACAATCCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (23 bp):
AAATATTAAAAAATAAAAGTTTT
Found at i:9255530 original size:24 final size:24
Alignment explanation
Indices: 9255502--9255574 Score: 69
Period size: 24 Copynumber: 3.0 Consensus size: 24
9255492 AAAAACTGTG
9255502 TAAAAATGTATTTATAATTAAAAA
1 TAAAAATGTATTTATAATTAAAAA
* *
9255526 TAAAAATAG-ATTGA-AATATGAAAA
1 TAAAAAT-GTATTTATAAT-TAAAAA
* *
9255550 TAAAAAATATATTTTTAATTAAAAA
1 T-AAAAATGTATTTATAATTAAAAA
9255575 AGATATGTAT
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
23 3 0.08
24 17 0.45
25 15 0.39
26 3 0.08
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.34
Consensus pattern (24 bp):
TAAAAATGTATTTATAATTAAAAA
Found at i:9256415 original size:22 final size:21
Alignment explanation
Indices: 9256365--9256426 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 21
9256355 AATGATTTTA
* *
9256365 AATTAAATATAAAAATAAGTATT
1 AATTAAATA-AAAATTAA-AATT
*
9256388 AATTAATTAAAAATTAAAATT
1 AATTAAATAAAAATTAAAATT
*
9256409 AATTTAAATAAATATTAA
1 AA-TTAAATAAAAATTAA
9256427 TCTATATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
21 5 0.15
22 20 0.61
23 8 0.24
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (21 bp):
AATTAAATAAAAATTAAAATT
Found at i:9263658 original size:145 final size:143
Alignment explanation
Indices: 9263254--9263658 Score: 447
Period size: 145 Copynumber: 2.8 Consensus size: 143
9263244 TTAAAATACT
* * * * *
9263254 AAAAATCATAAAATTTTATGAAATTAAGATCTAAAAAGTTTTATGAAAATTTGAGCTCGAAAAGG
1 AAAAATCATGAAATATTATGAAATTAAGATATAAAAAGTTTCATGAAAATTTGAGCTCGAGAAGG
* * * * *
9263319 TCAAATTATGAAAACACCCTTATAAAGGTATTTTGGTAATTTCACACGTCTTGGAGTACTACTAT
66 TCAAATTATGAAAATACCC-TATAAGGGTATTTTGGTAATTTTACAC-TTTTCGAGTACTACTAT
9263384 GATTTTCAATGCACC
129 GATTTTCAATGCACC
* * * * * * *
9263399 AAAACTTATGAAATATTATAAAATTAAGATATAAAAAGTTTCATGAAAATTCGATCT-TAGGAAA
1 AAAAATCATGAAATATTATGAAATTAAGATATAAAAAGTTTCATGAAAATTTGAGCTCGA-GAAG
** * * * *
9263463 ACCAAATTATAAAAATAACCCTATAAGGGTATATGGGTAACTTTACACTTTTCGAGATACTACTA
65 GTCAAATTATGAAAAT-ACCCTATAAGGGTATTTTGGTAATTTTACACTTTTCGAG-TACTACTA
9263528 TGA-TTTCAAATGCACC
128 TGATTTTC-AATGCACC
* * * *
9263544 AAAAATCATGAAATATTATGAAATTTAGATATGAAAA-TTTGCATTAAATTTTGAGCTCGAGAAG
1 AAAAATCATGAAATATTATGAAATTAAGATATAAAAAGTTT-CATGAAAATTTGAGCTCGAGAAG
* * *
9263608 GTAAAATTACGAAAATACCCATATAAGGGTATTTTGGTAATTTTATACTTT
65 GTCAAATTATGAAAATACCC-TATAAGGGTATTTTGGTAATTTTACACTTT
9263659 CAAGGGTGTA
Statistics
Matches: 210, Mismatches: 43, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
144 18 0.09
145 187 0.89
146 5 0.02
ACGTcount: A:0.42, C:0.12, G:0.13, T:0.33
Consensus pattern (143 bp):
AAAAATCATGAAATATTATGAAATTAAGATATAAAAAGTTTCATGAAAATTTGAGCTCGAGAAGG
TCAAATTATGAAAATACCCTATAAGGGTATTTTGGTAATTTTACACTTTTCGAGTACTACTATGA
TTTTCAATGCACC
Found at i:9264098 original size:7 final size:7
Alignment explanation
Indices: 9264086--9264160 Score: 61
Period size: 7 Copynumber: 10.7 Consensus size: 7
9264076 CTCTCCCCTT
9264086 TTTTTTG
1 TTTTTTG
9264093 TTTTTT-
1 TTTTTTG
9264099 TATTTTTG
1 T-TTTTTG
9264107 -TTTTTG
1 TTTTTTG
*
9264113 CTTTGTTG
1 -TTTTTTG
9264121 TTTGTTT-
1 TTT-TTTG
9264128 TTATTTTG
1 TT-TTTTG
9264136 TTGTTTTG
1 TT-TTTTG
9264144 -TTTTT-
1 TTTTTTG
9264149 TTTTTTG
1 TTTTTTG
9264156 TTTTT
1 TTTTT
9264161 ATGAATTACT
Statistics
Matches: 56, Mismatches: 3, Indels: 18
0.73 0.04 0.23
Matches are distributed among these distances:
6 16 0.29
7 25 0.45
8 15 0.27
ACGTcount: A:0.03, C:0.01, G:0.13, T:0.83
Consensus pattern (7 bp):
TTTTTTG
Found at i:9264143 original size:31 final size:33
Alignment explanation
Indices: 9264089--9264162 Score: 91
Period size: 31 Copynumber: 2.3 Consensus size: 33
9264079 TCCCCTTTTT
*
9264089 TTTGTTTTT-TTATTTTTGTTTTTGCTTTGTTG
1 TTTGTTTTTATTATTGTTGTTTTTGCTTTGTTG
* * *
9264121 TTTGTTTTTATT-TTGTTG-TTTTGTTTTTTTT
1 TTTGTTTTTATTATTGTTGTTTTTGCTTTGTTG
9264152 TTTGTTTTTAT
1 TTTGTTTTTAT
9264163 GAATTACTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
31 21 0.57
32 14 0.38
33 2 0.05
ACGTcount: A:0.04, C:0.01, G:0.14, T:0.81
Consensus pattern (33 bp):
TTTGTTTTTATTATTGTTGTTTTTGCTTTGTTG
Found at i:9264152 original size:18 final size:19
Alignment explanation
Indices: 9264102--9264159 Score: 77
Period size: 18 Copynumber: 3.2 Consensus size: 19
9264092 GTTTTTTTAT
**
9264102 TTTTGTTTTTGCTTTGTTG
1 TTTTGTTTTTATTTTGTTG
9264121 -TTTGTTTTTATTTTGTTG
1 TTTTGTTTTTATTTTGTTG
9264139 TTTTGTTTTT-TTTT-TTG
1 TTTTGTTTTTATTTTGTTG
9264156 TTTT
1 TTTT
9264160 TATGAATTAC
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.19
18 20 0.56
19 9 0.25
ACGTcount: A:0.02, C:0.02, G:0.16, T:0.81
Consensus pattern (19 bp):
TTTTGTTTTTATTTTGTTG
Found at i:9264160 original size:18 final size:18
Alignment explanation
Indices: 9264084--9264160 Score: 70
Period size: 17 Copynumber: 4.3 Consensus size: 18
9264074 TCCTCTCCCC
* *
9264084 TTTTT-TTTGTTTTTTTA
1 TTTTTGTTTTTTTTTTTG
**
9264101 TTTTTG-TTTTTGCTTTG
1 TTTTTGTTTTTTTTTTTG
9264118 TTGTTTGTTTTTATTTTGTTG
1 TT-TTTGTTTTT-TTTT-TTG
9264139 -TTTTGTTTTTTTTTTTG
1 TTTTTGTTTTTTTTTTTG
9264156 TTTTT
1 TTTTT
9264161 ATGAATTACT
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
17 17 0.35
18 12 0.25
19 13 0.27
20 3 0.06
21 3 0.06
ACGTcount: A:0.03, C:0.01, G:0.13, T:0.83
Consensus pattern (18 bp):
TTTTTGTTTTTTTTTTTG
Found at i:9264538 original size:22 final size:22
Alignment explanation
Indices: 9264497--9264551 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
9264487 GTTTTATTTG
* *
9264497 AAGGTCTTAAAGATTGTGCCGTA
1 AAGGTTTTAGAGATTGTGCC-TA
*
9264520 AA-GTTTTAGAGATTTTGCCTA
1 AAGGTTTTAGAGATTGTGCCTA
9264541 AAGGTTTTAGA
1 AAGGTTTTAGA
9264552 AATTATGTGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 4 0.14
22 22 0.79
23 2 0.07
ACGTcount: A:0.31, C:0.09, G:0.24, T:0.36
Consensus pattern (22 bp):
AAGGTTTTAGAGATTGTGCCTA
Found at i:9264662 original size:44 final size:44
Alignment explanation
Indices: 9264525--9264806 Score: 207
Period size: 44 Copynumber: 6.4 Consensus size: 44
9264515 CCGTAAAGTT
* * *
9264525 TTAGAGATTTTGCCTAAAGGTTTTAGAAATTATGTGC-AGAGGTC
1 TTAGAGATTATGCCTGAAGGTTTTAGAAATTATG-CCAAGAGGTC
* * * ** * * **
9264569 TTAAAAATTATACCCCAATGTTTTACAAATTATGCCTTGAGGTC
1 TTAGAGATTATGCCTGAAGGTTTTAGAAATTATGCCAAGAGGTC
* * * * *
9264613 ATAGAGATTGTGCTTGAAGGTTTTAGAAATTATGCCCAGAGATC
1 TTAGAGATTATGCCTGAAGGTTTTAGAAATTATGCCAAGAGGTC
* * *
9264657 TTAGAGATCATGCCT-AGAGGTCTTAGAAATTATGCCAATAGGTC
1 TTAGAGATTATGCCTGA-AGGTTTTAGAAATTATGCCAAGAGGTC
* * *
9264701 TTAGAAATTATGCCCTG-AGGTCTTAGAAATTGTGCCAAGAGGTC
1 TTAGAGATTATG-CCTGAAGGTTTTAGAAATTATGCCAAGAGGTC
* * * * *
9264745 TTAGAAATTATG-TTCGGAGGTTTTA-AAGATCATGCC-TGAAGGTC
1 TTAGAGATTATGCCT-GAAGGTTTTAGAA-ATTATGCCAAG-AGGTC
*
9264789 TTAGAGATCATGCCTGAA
1 TTAGAGATTATGCCTGAA
9264807 AGTCTTAAAG
Statistics
Matches: 185, Mismatches: 44, Indels: 18
0.75 0.18 0.07
Matches are distributed among these distances:
42 1 0.01
43 6 0.03
44 174 0.94
45 4 0.02
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (44 bp):
TTAGAGATTATGCCTGAAGGTTTTAGAAATTATGCCAAGAGGTC
Found at i:9264765 original size:22 final size:22
Alignment explanation
Indices: 9264630--9264756 Score: 164
Period size: 22 Copynumber: 5.8 Consensus size: 22
9264620 TTGTGCTTGA
* *
9264630 AGGTTTTAGAAATTATGCCCAG
1 AGGTCTTAGAAATTATGCCAAG
* * * *
9264652 AGATCTTAGAGATCATGCCTAG
1 AGGTCTTAGAAATTATGCCAAG
*
9264674 AGGTCTTAGAAATTATGCCAAT
1 AGGTCTTAGAAATTATGCCAAG
**
9264696 AGGTCTTAGAAATTATGCCCTG
1 AGGTCTTAGAAATTATGCCAAG
*
9264718 AGGTCTTAGAAATTGTGCCAAG
1 AGGTCTTAGAAATTATGCCAAG
9264740 AGGTCTTAGAAATTATG
1 AGGTCTTAGAAATTATG
9264757 TTCGGAGGTT
Statistics
Matches: 88, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 88 1.00
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31
Consensus pattern (22 bp):
AGGTCTTAGAAATTATGCCAAG
Found at i:9264780 original size:66 final size:66
Alignment explanation
Indices: 9264630--9264802 Score: 190
Period size: 66 Copynumber: 2.6 Consensus size: 66
9264620 TTGTGCTTGA
* * * *
9264630 AGGTTTTAGAAATTATGCCCAGAGATCTTAGAGATCATGCCTAGAGGTCTTAGAAATTATGCCAA
1 AGGTTTTAGAAATTATGCCCTGAGGTCTTAGAAATCATGCCAAGAGGTCTTAGAAATTATGCCAA
*
9264695 T
66 G
* ** *
9264696 AGGTCTTAGAAATTATGCCCTGAGGTCTTAGAAATTGTGCCAAGAGGTCTTAGAAATTATGTTC-
1 AGGTTTTAGAAATTATGCCCTGAGGTCTTAGAAATCATGCCAAGAGGTCTTAGAAATTATG-CCA
*
9264760 GG
65 AG
* *
9264762 AGGTTTTA-AAGATCATG-CCTGAAGGTCTTAGAGATCATGCC
1 AGGTTTTAGAA-ATTATGCCCTG-AGGTCTTAGAAATCATGCC
9264803 TGAAAGTCTT
Statistics
Matches: 89, Mismatches: 15, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
65 6 0.07
66 82 0.92
67 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.31
Consensus pattern (66 bp):
AGGTTTTAGAAATTATGCCCTGAGGTCTTAGAAATCATGCCAAGAGGTCTTAGAAATTATGCCAA
G
Found at i:9264796 original size:22 final size:22
Alignment explanation
Indices: 9264627--9264813 Score: 109
Period size: 22 Copynumber: 8.5 Consensus size: 22
9264617 AGATTGTGCT
* *
9264627 TGAAGGTTTTAGAAATTATGCC
1 TGAAGGTCTTAGAAATCATGCC
* * *
9264649 -CAGAGATCTTAGAGATCATGCC
1 TGA-AGGTCTTAGAAATCATGCC
*
9264671 T-AGAGGTCTTAGAAATTATGCC
1 TGA-AGGTCTTAGAAATCATGCC
* *
9264693 -AATAGGTCTTAGAAATTATGCCC
1 TGA-AGGTCTTAGAAATCATG-CC
**
9264716 TG-AGGTCTTAGAAATTGTGCC
1 TGAAGGTCTTAGAAATCATGCC
* * *
9264737 -AAGAGGTCTTAGAAATTATG-T
1 TGA-AGGTCTTAGAAATCATGCC
* *
9264758 TCGGAGGTTTTA-AAGATCATGCC
1 T-GAAGGTCTTAGAA-ATCATGCC
*
9264781 TGAAGGTCTTAGAGATCATGCC
1 TGAAGGTCTTAGAAATCATGCC
*
9264803 TGAAAGTCTTA
1 TGAAGGTCTTA
9264814 AAGATCTTAA
Statistics
Matches: 130, Mismatches: 23, Indels: 24
0.73 0.13 0.14
Matches are distributed among these distances:
21 5 0.04
22 121 0.93
23 4 0.03
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (22 bp):
TGAAGGTCTTAGAAATCATGCC
Found at i:9264818 original size:22 final size:22
Alignment explanation
Indices: 9264767--9264819 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
9264757 TTCGGAGGTT
*
9264767 TTAAAGATCATGCCTGAAGGTC
1 TTAAAGATCATGCCTGAAAGTC
*
9264789 TTAGAGATCATGCCTGAAAGTC
1 TTAAAGATCATGCCTGAAAGTC
9264811 TTAAAGATC
1 TTAAAGATC
9264820 TTAAAATCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (22 bp):
TTAAAGATCATGCCTGAAAGTC
Found at i:9265214 original size:18 final size:18
Alignment explanation
Indices: 9265191--9265237 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
9265181 TCCATTAAAT
*
9265191 GATGCAAATGTAAATGTC
1 GATGCAAATGCAAATGTC
9265209 GATGCAAATGCAAATGTC
1 GATGCAAATGCAAATGTC
*
9265227 AATGCAAATGC
1 GATGCAAATGC
9265238 CAAAATATGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.40, C:0.15, G:0.21, T:0.23
Consensus pattern (18 bp):
GATGCAAATGCAAATGTC
Found at i:9265487 original size:61 final size:61
Alignment explanation
Indices: 9265422--9265537 Score: 135
Period size: 61 Copynumber: 1.9 Consensus size: 61
9265412 CAAGTGCAAA
* * *
9265422 TGCAAATGATGCAAATACGAATAACT-TTTTTGTTTTTGTAGCATGCAAATCAAATATCTTT
1 TGCAAATGATGCAAATAC-AAAAACTCTTTTTGTTTTTGCAACATGCAAATCAAATATCTTT
* ** * * *
9265483 TGCAAGTGATGTGAATGCAAAAATTCTTTTTGTTTTTGCAACATGCAGATCAAAT
1 TGCAAATGATGCAAATACAAAAACTCTTTTTGTTTTTGCAACATGCAAATCAAAT
9265538 GTTTTTTTTG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
60 5 0.11
61 40 0.89
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.38
Consensus pattern (61 bp):
TGCAAATGATGCAAATACAAAAACTCTTTTTGTTTTTGCAACATGCAAATCAAATATCTTT
Found at i:9267520 original size:14 final size:16
Alignment explanation
Indices: 9267501--9267540 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
9267491 AATTCAGTTG
9267501 AATCAATTTT-GTT-T
1 AATCAATTTTAGTTAT
*
9267515 ATTCAATTTTAGTTAT
1 AATCAATTTTAGTTAT
9267531 AATCAATTTT
1 AATCAATTTT
9267541 TTAAATCAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 9 0.41
15 3 0.14
16 10 0.45
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (16 bp):
AATCAATTTTAGTTAT
Found at i:9277096 original size:16 final size:16
Alignment explanation
Indices: 9277075--9277108 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9277065 AAATCCTGTC
*
9277075 TTATTATTATTATTAT
1 TTATTATTATTATAAT
*
9277091 TTATTATTTTTATAAT
1 TTATTATTATTATAAT
9277107 TT
1 TT
9277109 TTGTTTTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TTATTATTATTATAAT
Found at i:9277467 original size:3 final size:3
Alignment explanation
Indices: 9277461--9277502 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
9277451 ATCATCATCA
9277461 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
9277503 CTTTTTTTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:9283990 original size:22 final size:22
Alignment explanation
Indices: 9283937--9283990 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
9283927 GTGTTTGAGG
* *
9283937 TGAAATGTGATGCATCCAATTT
1 TGAAATATGTTGCATCCAATTT
9283959 TGAAATATGTTGCATCCAATTT
1 TGAAATATGTTGCATCCAATTT
9283981 TGAAATATGT
1 TGAAATATGT
9283991 GTTATTTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (22 bp):
TGAAATATGTTGCATCCAATTT
Found at i:9288027 original size:9 final size:9
Alignment explanation
Indices: 9288013--9288040 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
9288003 GATCAATGCT
9288013 CCTTGGATG
1 CCTTGGATG
9288022 CCTTGGATG
1 CCTTGGATG
9288031 CCTTGGATG
1 CCTTGGATG
9288040 C
1 C
9288041 ATCAGGGATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.11, C:0.25, G:0.32, T:0.32
Consensus pattern (9 bp):
CCTTGGATG
Found at i:9298810 original size:16 final size:16
Alignment explanation
Indices: 9298772--9298810 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
9298762 AATTTTGTTT
* *
9298772 TTTTTTTATATTGTAA
1 TTTTTTTATAATATAA
*
9298788 TTATTTTATAATATAA
1 TTTTTTTATAATATAA
9298804 TTTTTTT
1 TTTTTTT
9298811 TTATTTTAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (16 bp):
TTTTTTTATAATATAA
Found at i:9299502 original size:16 final size:17
Alignment explanation
Indices: 9299481--9299513 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
9299471 TTGAAAGTGT
*
9299481 ATAGTATATAT-AAATA
1 ATAGTACATATCAAATA
9299497 ATAGTACATATCAAATA
1 ATAGTACATATCAAATA
9299514 TAAACTCATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.33
Consensus pattern (17 bp):
ATAGTACATATCAAATA
Found at i:9312032 original size:24 final size:22
Alignment explanation
Indices: 9311983--9312069 Score: 81
Period size: 22 Copynumber: 3.8 Consensus size: 22
9311973 CTCCCCCCTT
9311983 TTGTTTTTGTTTTTTTTATTTT-
1 TTGTTTTTGTTTTTTTT-TTTTG
9312005 TTGTTTTTGTTTTTTTTTGCTTTG
1 TTGTTTTTGTTTTTTTTT--TTTG
9312029 TTG-TTTTGTTGTTTTGTTATTTTG
1 TTGTTTTTGTT-TTTT-TT-TTTTG
* *
9312053 TTATTTTT-TTTGTTTTT
1 TTGTTTTTGTTTTTTTTT
9312070 ATGAATTACT
Statistics
Matches: 56, Mismatches: 2, Indels: 15
0.77 0.03 0.21
Matches are distributed among these distances:
21 2 0.04
22 19 0.34
23 13 0.23
24 15 0.27
25 6 0.11
26 1 0.02
ACGTcount: A:0.03, C:0.01, G:0.14, T:0.82
Consensus pattern (22 bp):
TTGTTTTTGTTTTTTTTTTTTG
Found at i:9312068 original size:8 final size:8
Alignment explanation
Indices: 9311986--9312069 Score: 66
Period size: 8 Copynumber: 10.4 Consensus size: 8
9311976 CCCCCTTTTG
9311986 TTTTTGTT
1 TTTTTGTT
9311994 TTTTT-TAT
1 TTTTTGT-T
9312002 TTTTTGTT
1 TTTTTGTT
9312010 TTTGTT-TT
1 TTT-TTGTT
*
9312018 TTTTTGCT
1 TTTTTGTT
*
9312026 TTGTTGTT
1 TTTTTGTT
*
9312034 TTGTTGTT
1 TTTTTGTT
* *
9312042 TTGTTATT
1 TTTTTGTT
9312050 TTGTTAT-TT
1 TT-TT-TGTT
9312059 TTTTTGTT
1 TTTTTGTT
9312067 TTT
1 TTT
9312070 ATGAATTACT
Statistics
Matches: 64, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
7 4 0.06
8 51 0.80
9 8 0.12
10 1 0.02
ACGTcount: A:0.04, C:0.01, G:0.13, T:0.82
Consensus pattern (8 bp):
TTTTTGTT
Found at i:9312431 original size:22 final size:22
Alignment explanation
Indices: 9312405--9312446 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
9312395 GTTTTACTTG
9312405 AAGGTCTTAAAGATTGTGCCGT
1 AAGGTCTTAAAGATTGTGCCGT
* *
9312427 AAGGTTTTAAAGATTTTGCC
1 AAGGTCTTAAAGATTGTGCC
9312447 TAGAGGCTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.36
Consensus pattern (22 bp):
AAGGTCTTAAAGATTGTGCCGT
Found at i:9312457 original size:22 final size:22
Alignment explanation
Indices: 9312411--9312457 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
9312401 CTTGAAGGTC
*
9312411 TTAAAGATTGTGCCGTAAGGTT
1 TTAAAGATTGTGCCGTAAGGCT
*
9312433 TTAAAGATTTTGCC-TAGAGGCT
1 TTAAAGATTGTGCCGTA-AGGCT
9312455 TTA
1 TTA
9312458 GAAATTATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 2 0.09
22 20 0.91
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.38
Consensus pattern (22 bp):
TTAAAGATTGTGCCGTAAGGCT
Found at i:9312513 original size:66 final size:64
Alignment explanation
Indices: 9312426--9312683 Score: 193
Period size: 66 Copynumber: 3.9 Consensus size: 64
9312416 GATTGTGCCG
* * *
9312426 TAAGGTTTTA-AAGATTTTGCCTAGAGG-CTTTAGAAATTATGTACAAAGGTCTTAGAAATTACA
1 TAAGGTCTTAGAA-ATTGTGCCTAGAGGTC-TTAGAAATTATGTCCAAAGGTCTTAGAAATTAC-
9312489 CT
63 CT
* * * * * * * * *
9312491 TCAAGGTTTTAGAAATTGTGCCTTGAAGTCTTAGAGATTGTG-CTCGAAGATTTTAGAAATTATG
1 T-AAGGTCTTAGAAATTGTGCCTAGAGGTCTTAGAAATTATGTC-CAAAGGTCTTAGAAATTA-C
9312555 CT
63 CT
* * * *
9312557 TGAAGGTCTTAGAGATCGTG-CTCAAAGGTCTTAAAAATTATG-CCAAGAGGTCTTAGAAATTAT
1 T-AAGGTCTTAGAAATTGTGCCT-AGAGGTCTTAGAAATTATGTCCAA-AGGTCTTAGAAATTA-
9312620 GCCT
62 -CCT
* * * * *
9312624 TGAGGTCCTAGAAATTGTGCCAAGAGGTCTTAGAAATTATGTCCGAAGGTCTTAAAAATT
1 TAAGGTCTTAGAAATTGTGCCTAGAGGTCTTAGAAATTATGTCCAAAGGTCTTAGAAATT
9312684 GTGCTCAAAT
Statistics
Matches: 149, Mismatches: 34, Indels: 19
0.74 0.17 0.09
Matches are distributed among these distances:
65 5 0.03
66 134 0.90
67 10 0.07
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (64 bp):
TAAGGTCTTAGAAATTGTGCCTAGAGGTCTTAGAAATTATGTCCAAAGGTCTTAGAAATTACCT
Found at i:9312522 original size:44 final size:44
Alignment explanation
Indices: 9312454--9312569 Score: 112
Period size: 44 Copynumber: 2.6 Consensus size: 44
9312444 GCCTAGAGGC
** *
9312454 TTTAGAAATTATG-TACAAAGGTCTTAGAAATTACACTTC-AAGGT
1 TTTAGAAATTATGCT-TGAAGGTCTTAGAAATTACAC-TCGAAGAT
* * ***
9312498 TTTAGAAATTGTGCCTTGAA-GTCTTAGAGATTGTGCTCGAAGAT
1 TTTAGAAATTATG-CTTGAAGGTCTTAGAAATTACACTCGAAGAT
9312542 TTTAGAAATTATGCTTGAAGGTCTTAGA
1 TTTAGAAATTATGCTTGAAGGTCTTAGA
9312570 GATCGTGCTC
Statistics
Matches: 59, Mismatches: 9, Indels: 8
0.78 0.12 0.11
Matches are distributed among these distances:
43 8 0.14
44 48 0.81
45 2 0.03
46 1 0.02
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (44 bp):
TTTAGAAATTATGCTTGAAGGTCTTAGAAATTACACTCGAAGAT
Found at i:9312524 original size:22 final size:22
Alignment explanation
Indices: 9312499--9312687 Score: 109
Period size: 22 Copynumber: 8.6 Consensus size: 22
9312489 CTTCAAGGTT
9312499 TTAGAAATTGTGCCTTGAAGTC
1 TTAGAAATTGTGCCTTGAAGTC
* * *
9312521 TTAGAGATTGTG-CTCGAAGATT
1 TTAGAAATTGTGCCTTGAAG-TC
*
9312543 TTAGAAATTATG-CTTGAAGGTC
1 TTAGAAATTGTGCCTTGAA-GTC
* * **
9312565 TTAGAGATCGTG-CTCAAAGGTC
1 TTAGAAATTGTGCCTTGAA-GTC
* * ** *
9312587 TTAAAAATTATGCCAAGAGGTC
1 TTAGAAATTGTGCCTTGAAGTC
* *
9312609 TTAGAAATTATGCCTTGAGGTC
1 TTAGAAATTGTGCCTTGAAGTC
* ** *
9312631 CTAGAAATTGTGCCAAGAGGTC
1 TTAGAAATTGTGCCTTGAAGTC
*
9312653 TTAGAAATTATGTCC--GAAGGTC
1 TTAGAAATTGTG-CCTTGAA-GTC
*
9312675 TTAAAAATTGTGC
1 TTAGAAATTGTGC
9312688 TCAAATGTTT
Statistics
Matches: 130, Mismatches: 32, Indels: 11
0.75 0.18 0.06
Matches are distributed among these distances:
21 9 0.07
22 116 0.89
23 5 0.04
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.32
Consensus pattern (22 bp):
TTAGAAATTGTGCCTTGAAGTC
Found at i:9312570 original size:44 final size:43
Alignment explanation
Indices: 9312497--9312599 Score: 134
Period size: 44 Copynumber: 2.3 Consensus size: 43
9312487 CACTTCAAGG
* * *
9312497 TTTTAGAAATTGTGCCTTGAAGTCTTAGAGATTGTGCTCGAAGA
1 TTTTAGAAATTATG-CTTGAAGTCTTAGAGATCGTGCTCAAAGA
*
9312541 TTTTAGAAATTATGCTTGAAGGTCTTAGAGATCGTGCTCAAAGG
1 TTTTAGAAATTATGCTTGAA-GTCTTAGAGATCGTGCTCAAAGA
* *
9312585 TCTTAAAAATTATGC
1 TTTTAGAAATTATGC
9312600 CAAGAGGTCT
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
43 6 0.12
44 46 0.88
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.36
Consensus pattern (43 bp):
TTTTAGAAATTATGCTTGAAGTCTTAGAGATCGTGCTCAAAGA
Found at i:9312608 original size:44 final size:44
Alignment explanation
Indices: 9312518--9312723 Score: 150
Period size: 44 Copynumber: 4.7 Consensus size: 44
9312508 GTGCCTTGAA
* * * * **
9312518 GTCTTAGAGATTGTGCTCGAAGATTTTAGAAATTATG-CTTGAAG
1 GTCTTAGAGATTATGCTCGAAGGTCTTAAAAATTATGCCAAG-AG
** *
9312562 GTCTTAGAGATCGTGCTCAAAGGTCTTAAAAATTATGCCAAGAG
1 GTCTTAGAGATTATGCTCGAAGGTCTTAAAAATTATGCCAAGAG
* * * * *
9312606 GTCTTAGAAATTATGCCTTG-AGGTCCTAGAAATTGTGCCAAGAG
1 GTCTTAGAGATTATG-CTCGAAGGTCTTAAAAATTATGCCAAGAG
* * *
9312650 GTCTTAGAAATTATG-TCCGAAGGTCTTAAAAATTGTGCTCAA-AT
1 GTCTTAGAGATTATGCT-CGAAGGTCTTAAAAATTATGC-CAAGAG
* * * * *
9312694 GTTTTAGAGATCATACCCGAAAGTCTTAAA
1 GTCTTAGAGATTATGCTCGAAGGTCTTAAA
9312724 GATCTCAAAA
Statistics
Matches: 131, Mismatches: 25, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 122 0.93
45 7 0.05
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.32
Consensus pattern (44 bp):
GTCTTAGAGATTATGCTCGAAGGTCTTAAAAATTATGCCAAGAG
Found at i:9314194 original size:130 final size:129
Alignment explanation
Indices: 9314056--9314346 Score: 309
Period size: 130 Copynumber: 2.2 Consensus size: 129
9314046 AACTTTAAAC
* * * * *
9314056 TTCAATTTTAGCATTCTACTTTCTTT-AATTCTATTTTTCTAAAGCTTTATTCA-TTTATTGCCT
1 TTCATTTTTAGCAATC-AATTT-TTTGAATTCTATTTTCCTAAAGCTTCATTCACTTT-TTGCCT
* * *
9314119 TAGACTCTCATTTTTGAAATGTATTTCTTTCTTTCTTTGCTTTCCCCATCTTTTTTTGGGCATTT
63 TAGACTCTCATTTTCGAAATGCATTTCTTT-TTTCTTTGCCTTCCCCATCTTTTTTTGGGCATTT
9314184 GAT
127 GAT
* * *
9314187 TTCATTTTTAGCAATCAATTTTTTGAATTCTATTTTCCTGAAGCTTCATTCACTTTTTGCTTTGG
1 TTCATTTTTAGCAATCAATTTTTTGAATTCTATTTTCCTAAAGCTTCATTCACTTTTTGCCTTAG
* * ** * *
9314252 GCTCTCATTTTCGAAGTGCATTTCTTTTTTCTTTGCCTT-CCTTTTTTTTTCTTGGAACATTTGA
66 ACTCTCATTTTCGAAATGCATTTCTTTTTTCTTTGCCTTCCCCATCTTTTT-TTGG-GCATTTGA
*
9314316 C
129 T
* * *
9314317 TTCACTTTTAGCAATTAACTTTCTTGAATT
1 TTCATTTTTAGCAATCAA-TTTTTTGAATT
9314347 ATTGGGTTTC
Statistics
Matches: 134, Mismatches: 21, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
128 8 0.06
129 18 0.13
130 81 0.60
131 27 0.20
ACGTcount: A:0.18, C:0.19, G:0.10, T:0.54
Consensus pattern (129 bp):
TTCATTTTTAGCAATCAATTTTTTGAATTCTATTTTCCTAAAGCTTCATTCACTTTTTGCCTTAG
ACTCTCATTTTCGAAATGCATTTCTTTTTTCTTTGCCTTCCCCATCTTTTTTTGGGCATTTGAT
Found at i:9322153 original size:16 final size:16
Alignment explanation
Indices: 9322124--9322161 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
9322114 TTAACTACAA
9322124 ACAAA-AAAAAAACTC
1 ACAAAGAAAAAAACTC
* *
9322139 ATAAAGAAAACAACTC
1 ACAAAGAAAAAAACTC
9322155 ACAAAGA
1 ACAAAGA
9322162 TTTGAATAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.68, C:0.18, G:0.05, T:0.08
Consensus pattern (16 bp):
ACAAAGAAAAAAACTC
Found at i:9325381 original size:3 final size:3
Alignment explanation
Indices: 9325375--9325409 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
9325365 TTTTTTTCAA
*
9325375 TAT TAT TAT CAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
9325410 CCTTTTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:9327345 original size:143 final size:143
Alignment explanation
Indices: 9327077--9327404 Score: 374
Period size: 143 Copynumber: 2.3 Consensus size: 143
9327067 AAGTACCCTT
* * * *
9327077 AAATTATAAAAATACCCCTATAAGGATATTTTGGTAATTTCACACTTTTTGGAGTACTACTATGA
1 AAATTATAAAAATA-CCCTATAAGGGTATTTTGGTAACTTCACACTTCTCGGAGTACTACTATGA
* * * * * ** *
9327142 TTTCCAATGCACCAAAAATCATGAAATATTATGAAATTAAGATCTAAAAAGTTTTGTGAAAATCT
65 TTTCAAATACACCAAAAAACATAAAACATTATGAAATTAAGATCTAAAAAGTTTCATGAAAATAT
*
9327207 GATCTCGAGAAAA-TC
130 GAGCTC-A-AAAAGTC
* * * * *
9327222 AAATTATGAAAATATCTCTATAAGGGTATTTTGGTAACTTCACAC-TCTCGG-GTATTGCTGTGA
1 AAATTATAAAAATA-CCCTATAAGGGTATTTTGGTAACTTCACACTTCTCGGAGTACTACTATGA
* * *
9327285 TTTCAAATACAGCAAAAAACATAAAACATTATGAAATTAAGATCTGAAAAGTTTCATGAAATTAT
65 TTTCAAATACACCAAAAAACATAAAACATTATGAAATTAAGATCTAAAAAGTTTCATGAAAATAT
*
9327350 TAGCTCAAAAAGGTC
130 GAGCTCAAAAA-GTC
*
9327365 AAATTATAAAAATACCCTTATAAGGGTATTTTGATAACTT
1 AAATTATAAAAATACCC-TATAAGGGTATTTTGGTAACTT
9327405 TGTACTTTTT
Statistics
Matches: 154, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
141 4 0.03
142 3 0.02
143 103 0.67
144 4 0.03
145 40 0.26
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (143 bp):
AAATTATAAAAATACCCTATAAGGGTATTTTGGTAACTTCACACTTCTCGGAGTACTACTATGAT
TTCAAATACACCAAAAAACATAAAACATTATGAAATTAAGATCTAAAAAGTTTCATGAAAATATG
AGCTCAAAAAGTC
Found at i:9333864 original size:7 final size:6
Alignment explanation
Indices: 9333847--9333877 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
9333837 ATAGTTTTTG
9333847 TAAAAA TAAAAA TAAAAA TAAAAA TTAAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA -TAAAAA
9333878 CCATTTTCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
TAAAAA
Found at i:9341896 original size:16 final size:16
Alignment explanation
Indices: 9341871--9341910 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
9341861 CGATAAACGA
*
9341871 ATGATAATGATGATTT
1 ATGATGATGATGATTT
9341887 ATGATGATGATGATTT
1 ATGATGATGATGATTT
*
9341903 ACGATGAT
1 ATGATGAT
9341911 TTTTAATGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.35, C:0.03, G:0.23, T:0.40
Consensus pattern (16 bp):
ATGATGATGATGATTT
Found at i:9345480 original size:16 final size:15
Alignment explanation
Indices: 9345459--9345492 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
9345449 TTTTTCTTAA
9345459 ATTATAATTATTTTAT
1 ATTATAATT-TTTTAT
*
9345475 ATTATAATTTTTTGT
1 ATTATAATTTTTTAT
9345490 ATT
1 ATT
9345493 TTTAAACTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (15 bp):
ATTATAATTTTTTAT
Found at i:9355698 original size:97 final size:99
Alignment explanation
Indices: 9355512--9355698 Score: 225
Period size: 97 Copynumber: 1.9 Consensus size: 99
9355502 TTTTTAAAAC
** ** * * * *
9355512 TTATTTATGAATTTATTTAAAACATCATTAAATCTTTTAATAGTTTGGTAAAATTTAAATCCAAG
1 TTATTTAAAAATTTATTTAAAACAAAATTAAACCCTTAAATAGTTTGGTAAAAGTTAAATCCAAG
* *
9355577 ATTTAAAACCTCTAATAGTTTGGTAATATTGATT
66 ATTTAAAACCTCCAATAGCTTGGTAATATTGATT
* ***
9355611 TTATTTAAAAATTTATTTAAAA-AAAATTAAACCCTTAAATAGTTTGGT-AAAGTTCAATTTGAG
1 TTATTTAAAAATTTATTTAAAACAAAATTAAACCCTTAAATAGTTTGGTAAAAGTTAAATCCAAG
*
9355674 ATTTAAATCCTCCAATAGCTTGGTA
66 ATTTAAAACCTCCAATAGCTTGGTA
9355699 GGATTAAAAA
Statistics
Matches: 73, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
97 32 0.44
98 21 0.29
99 20 0.27
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.42
Consensus pattern (99 bp):
TTATTTAAAAATTTATTTAAAACAAAATTAAACCCTTAAATAGTTTGGTAAAAGTTAAATCCAAG
ATTTAAAACCTCCAATAGCTTGGTAATATTGATT
Found at i:9356815 original size:2 final size:2
Alignment explanation
Indices: 9356808--9356843 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
9356798 ATCAGTCTTT
9356808 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9356844 ACGATGATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:9356885 original size:37 final size:38
Alignment explanation
Indices: 9356835--9356913 Score: 151
Period size: 37 Copynumber: 2.1 Consensus size: 38
9356825 ATATATATAT
9356835 ATATATATAACGATGATTTTA-CCCTCCAAATTACAAA
1 ATATATATAACGATGATTTTACCCCTCCAAATTACAAA
9356872 ATATATATAACGATGATTTTACCCCTCCAAATTACAAA
1 ATATATATAACGATGATTTTACCCCTCCAAATTACAAA
9356910 ATAT
1 ATAT
9356914 CCTCATCAGA
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
37 21 0.51
38 20 0.49
ACGTcount: A:0.43, C:0.19, G:0.05, T:0.33
Consensus pattern (38 bp):
ATATATATAACGATGATTTTACCCCTCCAAATTACAAA
Found at i:9358615 original size:10 final size:10
Alignment explanation
Indices: 9358597--9358645 Score: 62
Period size: 10 Copynumber: 4.7 Consensus size: 10
9358587 TTAAATATAA
9358597 AAATAAATTT
1 AAATAAATTT
*
9358607 AAATTAATTT
1 AAATAAATTT
9358617 AAATAAATTT
1 AAATAAATTT
9358627 AATAGTAAATTT
1 AA-A-TAAATTT
*
9358639 ATATAAA
1 AAATAAA
9358646 AGTGCGTATT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
10 24 0.71
11 2 0.06
12 8 0.24
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (10 bp):
AAATAAATTT
Found at i:9359749 original size:18 final size:19
Alignment explanation
Indices: 9359726--9359771 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
9359716 AAATTTCGTA
*
9359726 AATTAATCAAG-ATTAATG
1 AATTAATCAAGAATGAATG
* *
9359744 AATTAA-CATGAATGAATT
1 AATTAATCAAGAATGAATG
9359762 AATTAATCAA
1 AATTAATCAA
9359772 TATTTTTTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
17 3 0.14
18 17 0.77
19 2 0.09
ACGTcount: A:0.52, C:0.07, G:0.09, T:0.33
Consensus pattern (19 bp):
AATTAATCAAGAATGAATG
Found at i:9360377 original size:30 final size:28
Alignment explanation
Indices: 9360343--9360419 Score: 79
Period size: 29 Copynumber: 2.6 Consensus size: 28
9360333 TCTTTTATTT
9360343 AAAATAAAAATTTATTT-GA-ATGCAAATCAA
1 AAAATAAAAATTTATTTAGATAT---AAT-AA
9360373 AAAAT-AAAATCTTATTTAGATATAATAA
1 AAAATAAAAAT-TTATTTAGATATAATAA
9360401 AAATATAAAAATTTATTTA
1 AAA-ATAAAAATTTATTTA
9360420 AAAAATAAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 11
0.79 0.00 0.21
Matches are distributed among these distances:
28 5 0.12
29 17 0.40
30 16 0.38
31 2 0.05
32 2 0.05
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (28 bp):
AAAATAAAAATTTATTTAGATATAATAA
Found at i:9360674 original size:60 final size:60
Alignment explanation
Indices: 9360601--9360780 Score: 326
Period size: 60 Copynumber: 3.0 Consensus size: 60
9360591 ACTAACGTCG
9360601 ATGTATAAAATAATATTAATCAATCATTTAATATTAAATTAAA-CAGAGTTAGACGACTGC
1 ATGTATAAAATAATATTAATCAATCATTTAATATTAAATTAAACCA-AGTTAGACGACTGC
* *
9360661 ATGTATAAAATAATATTAATCAATCATTTAATATTAAACTAAACCAAGTTAGACGATTGC
1 ATGTATAAAATAATATTAATCAATCATTTAATATTAAATTAAACCAAGTTAGACGACTGC
9360721 ATGTATAAAATAATATTAATCAATCATTTAATATTAAATTAAACCAAGTTAGACGACTGC
1 ATGTATAAAATAATATTAATCAATCATTTAATATTAAATTAAACCAAGTTAGACGACTGC
9360781 TGCTTTCATT
Statistics
Matches: 115, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
60 113 0.98
61 2 0.02
ACGTcount: A:0.47, C:0.11, G:0.09, T:0.33
Consensus pattern (60 bp):
ATGTATAAAATAATATTAATCAATCATTTAATATTAAATTAAACCAAGTTAGACGACTGC
Found at i:9361056 original size:38 final size:38
Alignment explanation
Indices: 9361005--9361109 Score: 158
Period size: 38 Copynumber: 2.8 Consensus size: 38
9360995 TGCAAAAGCT
* *
9361005 GGTTGGATCCATTCCCACACGAAACTAGCAGCCAACTA
1 GGTTGCATCCATTCCCACACGAAACCAGCAGCCAACTA
*
9361043 GGTTGCATCCATTCCCATACGAAACCAGCAGCCAACTA
1 GGTTGCATCCATTCCCACACGAAACCAGCAGCCAACTA
**
9361081 GGTTGCATCCATT-CCGTACGAAACCAGCA
1 GGTTGCATCCATTCCCACACGAAACCAGCA
9361110 ACCAGTCATT
Statistics
Matches: 63, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
37 15 0.24
38 48 0.76
ACGTcount: A:0.30, C:0.32, G:0.18, T:0.19
Consensus pattern (38 bp):
GGTTGCATCCATTCCCACACGAAACCAGCAGCCAACTA
Found at i:9362002 original size:3 final size:3
Alignment explanation
Indices: 9361994--9362022 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
9361984 GGTTACTTAC
9361994 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
9362023 AACCAAATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:9362052 original size:22 final size:22
Alignment explanation
Indices: 9362027--9362068 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
9362017 TAATAAAACC
* *
9362027 AAATATAATTAGAGAAAATCTA
1 AAATAAAATGAGAGAAAATCTA
*
9362049 AAATAAAATGGGAGAAAATC
1 AAATAAAATGAGAGAAAATC
9362069 ACATAATGTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.60, C:0.05, G:0.14, T:0.21
Consensus pattern (22 bp):
AAATAAAATGAGAGAAAATCTA
Found at i:9362796 original size:17 final size:18
Alignment explanation
Indices: 9362774--9362808 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
9362764 CATAATTAAT
9362774 TAGATTCATGAAT-ATTA
1 TAGATTCATGAATGATTA
9362791 TAGATTCATGAATGATTA
1 TAGATTCATGAATGATTA
9362809 AGTTTGTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.40, C:0.06, G:0.14, T:0.40
Consensus pattern (18 bp):
TAGATTCATGAATGATTA
Found at i:9368009 original size:21 final size:21
Alignment explanation
Indices: 9367970--9368009 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
9367960 TCTGTTTGTC
* *
9367970 TTAAATAAAATAGATTAATCA
1 TTAAATAAAATAAAATAATCA
*
9367991 TTAAATAATATAAAATAAT
1 TTAAATAAAATAAAATAAT
9368010 AAAAAAGAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.35
Consensus pattern (21 bp):
TTAAATAAAATAAAATAATCA
Found at i:9369601 original size:11 final size:11
Alignment explanation
Indices: 9369574--9369612 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
9369564 TTATGTAATA
*
9369574 TAAATATAAATT
1 TAAATATATA-T
9369586 TAAATATATAT
1 TAAATATATAT
*
9369597 TAAATACATAT
1 TAAATATATAT
9369608 TAAAT
1 TAAAT
9369613 GAGTATTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
11 16 0.64
12 9 0.36
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (11 bp):
TAAATATATAT
Found at i:9371720 original size:21 final size:22
Alignment explanation
Indices: 9371681--9371721 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
9371671 GCTTGTTAGG
* *
9371681 AAAAAATTAGAAGCTGAAAAGC
1 AAAAAATAAGAAGCAGAAAAGC
9371703 AAAAAATAAGAAG-AGAAAA
1 AAAAAATAAGAAGCAGAAAA
9371722 TTTAAAGCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.68, C:0.05, G:0.17, T:0.10
Consensus pattern (22 bp):
AAAAAATAAGAAGCAGAAAAGC
Found at i:9382487 original size:24 final size:24
Alignment explanation
Indices: 9382460--9382506 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
9382450 ATTCATTATA
9382460 TCATTA-TCAATTTACTCATTTTCG
1 TCATTACTCAATTT-CTCATTTTCG
* *
9382484 TCATTACTCACTTTCTCTTTTTC
1 TCATTACTCAATTTCTCATTTTC
9382507 TCCTTAAGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.19, C:0.26, G:0.02, T:0.53
Consensus pattern (24 bp):
TCATTACTCAATTTCTCATTTTCG
Found at i:9394068 original size:11 final size:12
Alignment explanation
Indices: 9394054--9394085 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
9394044 AAAAAAAACC
9394054 AAAAGGAAAAA-
1 AAAAGGAAAAAT
9394065 AAAAGGAAAAAT
1 AAAAGGAAAAAT
9394077 AAAA-GAAAA
1 AAAAGGAAAA
9394086 GTTAGAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 16 0.80
12 4 0.20
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (12 bp):
AAAAGGAAAAAT
Found at i:9396904 original size:47 final size:49
Alignment explanation
Indices: 9396849--9396966 Score: 125
Period size: 48 Copynumber: 2.5 Consensus size: 49
9396839 AATGAAAAAT
* *
9396849 GATGAGA-TTTTAAAGTTGCTTGGCCTTTATTTAGAAGGA-ATTTTTCA
1 GATGAGACTTTTAAAGTTGCTTGACCTCTATTTAGAAGGAGATTTTTCA
* * * * * *
9396896 TATGAGATTTTTAAAGTT-ATTTACCTCTATTTAGGAGGAGCTTTTTCA
1 GATGAGACTTTTAAAGTTGCTTGACCTCTATTTAGAAGGAGATTTTTCA
* *
9396944 GGTGAAACTTTTAAAGTTGCTTG
1 GATGAGACTTTTAAAGTTGCTTG
9396967 TAAGACTTTT
Statistics
Matches: 55, Mismatches: 13, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
47 22 0.40
48 31 0.56
49 2 0.04
ACGTcount: A:0.27, C:0.09, G:0.20, T:0.43
Consensus pattern (49 bp):
GATGAGACTTTTAAAGTTGCTTGACCTCTATTTAGAAGGAGATTTTTCA
Found at i:9405090 original size:2 final size:2
Alignment explanation
Indices: 9405083--9405119 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
9405073 TTTATATTTT
*
9405083 TA TA TA TA GA TA -A TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9405120 CACCTAACAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (2 bp):
TA
Found at i:9405901 original size:3 final size:3
Alignment explanation
Indices: 9405895--9405926 Score: 55
Period size: 3 Copynumber: 10.3 Consensus size: 3
9405885 TTGTTGTTGT
9405895 TGA TGA TGA TGA TGA TGA TGAA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TG-A TGA TGA TGA T
9405927 TTTTATTGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
TGA
Found at i:9406591 original size:32 final size:32
Alignment explanation
Indices: 9406548--9406611 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
9406538 TGATCAAACA
9406548 AAAACAATAATTGCAATAGTATTTTTATTATT
1 AAAACAATAATTGCAATAGTATTTTTATTATT
*
9406580 AAAATAATAATTGCAATAGTATTTTTATTATT
1 AAAACAATAATTGCAATAGTATTTTTATTATT
9406612 TTCAAAACCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.44, C:0.05, G:0.06, T:0.45
Consensus pattern (32 bp):
AAAACAATAATTGCAATAGTATTTTTATTATT
Found at i:9411806 original size:144 final size:142
Alignment explanation
Indices: 9411542--9411948 Score: 442
Period size: 144 Copynumber: 2.8 Consensus size: 142
9411532 GGGGAATTAA
* * * * **
9411542 AAATTACTAAAATGCCCCTTAGGGGTATTTTCATAATTTGGCCTTTCT-GAGCTTGTATTTTTGT
1 AAATTACCAAAATACCCTTTAGGGGTATTTTCATAATTTGG-CTTTCTCGAGCTTGGATTTTCAT
* * * *
9411606 AAAACTTTTTAGATCTTAATTTCATAATATTTCATGATTTTTGGTGCATTTGAAATCATAGCAAT
65 GAAACTTTTTAGAT-TTAATTTCATAATATTTCATGATTTTTGGTGGATTTAAAATCACAGCAAT
***
9411671 A-CCTCGTGGGGCATG
129 ATCC-C-AAAGGCATG
* * *
9411686 AAATTACCAAAATATCCCTTTAGGGGTATTTTCGTAACTTGGCTTTCTCAAGCTTGGATTTTCAT
1 AAATTACCAAAATA-CCCTTTAGGGGTATTTTCATAATTTGGCTTTCTCGAGCTTGGATTTTCAT
* * *
9411751 GAAACTTTTCAGATTTACTTTCATAATATTTCATGATTTTTGGTGGATTTAAAATCACAGCAGTA
65 GAAACTTTTTAGATTTAATTTCATAATATTTCATGATTTTTGGTGGATTTAAAATCACAGCAATA
**
9411816 TCCCAAAGGTTTG
130 TCCCAAAGGCATG
* * ** * * * *
9411829 GAATTACCAAAATACCTTTTAATGGTAGTTTCCTAATTTGGCTTTCACGAGCTTAGATTTTCATG
1 AAATTACCAAAATACCCTTTAGGGGTATTTTCATAATTTGGCTTTCTCGAGCTTGGATTTTCATG
* * * *
9411894 AAATTTTTTAGGACTTAATTTCATAATATTTCATGATTTTTGAT-GCTTTAAAATC
66 AAACTTTTTA-GATTTAATTTCATAATATTTCATGATTTTTGGTGGATTTAAAATC
9411949 CAAAAAATGA
Statistics
Matches: 222, Mismatches: 37, Indels: 10
0.83 0.14 0.04
Matches are distributed among these distances:
142 60 0.27
143 47 0.21
144 65 0.29
145 50 0.23
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.42
Consensus pattern (142 bp):
AAATTACCAAAATACCCTTTAGGGGTATTTTCATAATTTGGCTTTCTCGAGCTTGGATTTTCATG
AAACTTTTTAGATTTAATTTCATAATATTTCATGATTTTTGGTGGATTTAAAATCACAGCAATAT
CCCAAAGGCATG
Found at i:9411931 original size:143 final size:144
Alignment explanation
Indices: 9411607--9411948 Score: 404
Period size: 142 Copynumber: 2.4 Consensus size: 144
9411597 TATTTTTGTA
* * *
9411607 AAACTTTTTAGATCTTAATTTCATAATATTTCATGATTTTTGGTGCATTTGAAATCATAGCAATA
1 AAACTTTTTAGA-CTTAATTTCATAATATTTCATGATTTTTGGTGGATTTAAAATCACAGCAATA
*** * * * *
9411672 CCTCGTGGGGCATGAAATTACCAAAATATCCCTTTAGGGGTATTTTCGTAACTTGGCTTTCTCAA
65 CCTCGAAAGGCATGAAATTACCAAAATATCCCTTTAAGGGTAGTTTCCTAACTTGGCTTTCACAA
*
9411737 GCTTGGATTTTCATG
130 GCTTAGATTTTCATG
* * * *
9411752 AAACTTTTCAGATTTACTTTCATAATATTTCATGATTTTTGGTGGATTTAAAATCACAGCAGTAT
1 AAACTTTTTAGACTTAATTTCATAATATTTCATGATTTTTGGTGGATTTAAAATCACAGCAATA-
** * * * * *
9411817 CC-C-AAAGGTTTGGAATTACCAAAATA-CCTTTTAATGGTAGTTTCCTAATTTGGCTTTCACGA
65 CCTCGAAAGGCATGAAATTACCAAAATATCCCTTTAAGGGTAGTTTCCTAACTTGGCTTTCACAA
9411879 GCTTAGATTTTCATG
130 GCTTAGATTTTCATG
* * *
9411894 AAATTTTTTAGGACTTAATTTCATAATATTTCATGATTTTTGAT-GCTTTAAAATC
1 AAACTTTTTA-GACTTAATTTCATAATATTTCATGATTTTTGGTGGATTTAAAATC
9411949 CAAAAAATGA
Statistics
Matches: 167, Mismatches: 28, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
142 60 0.36
143 47 0.28
144 47 0.28
145 13 0.08
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.42
Consensus pattern (144 bp):
AAACTTTTTAGACTTAATTTCATAATATTTCATGATTTTTGGTGGATTTAAAATCACAGCAATAC
CTCGAAAGGCATGAAATTACCAAAATATCCCTTTAAGGGTAGTTTCCTAACTTGGCTTTCACAAG
CTTAGATTTTCATG
Found at i:9417610 original size:25 final size:25
Alignment explanation
Indices: 9417582--9417631 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
9417572 ATTTGTTTTC
9417582 ACAAATCTACAAGGTAGTGTAAAAA
1 ACAAATCTACAAGGTAGTGTAAAAA
*
9417607 ACAAATCTATAAGGTAGTGTAAAAA
1 ACAAATCTACAAGGTAGTGTAAAAA
9417632 GCCAATGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.52, C:0.10, G:0.16, T:0.22
Consensus pattern (25 bp):
ACAAATCTACAAGGTAGTGTAAAAA
Found at i:9420320 original size:139 final size:143
Alignment explanation
Indices: 9420174--9420446 Score: 310
Period size: 139 Copynumber: 1.9 Consensus size: 143
9420164 TGCATTTTGA
* *
9420174 AGATAAGAGTCTGACGCGAAAAATGAATAAAACTTCAGTCCCAAGT-AAA-AAAAAA-GAGATAG
1 AGATAAGAATCTGACGCGAAAAATGAATAAAACTTCAGTCACAA-TCAAATAAAAAAGGAGATAG
9420236 AATTCAAG-A-AAGAA-G-AAAGTTGAAGTCAAATG-TTTCCAAAAAAAAAAAAAGAACAAAAGA
65 AATTCAAGAAGAAGAATGCAAAGTTGAAGTCAAATGCTTT-C-AAAAAAAAAAAAGAAC-AAAGA
9420296 AAAGACGTACACCTCGG
127 AAAGACGTACACCTCGG
* * * * ** *
9420313 AGATAAGAATTTGAGGTGAAAAGTGAATAAGGCTTCAGTTACAATCCCAAATAAAAAAGGGAGAT
1 AGATAAGAATCTGACGCGAAAAATGAATAAAACTTCAGTCACAAT--CAAATAAAAAA-GGAGAT
* *
9420378 AGAATTCAAGAATGAAGAATGCTAAAGTTGAAGTCAAATGCTTTCAAAAAAATAAAAGAGCAAAG
63 AGAATTCAAGAA-GAAGAATGC-AAAGTTGAAGTCAAATGCTTTCAAAAAAAAAAAAGAACAAAG
9420443 AAAA
126 AAAA
9420447 AAATACACAT
Statistics
Matches: 110, Mismatches: 11, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
138 1 0.01
139 35 0.32
141 3 0.03
142 6 0.05
144 15 0.14
145 1 0.01
147 5 0.05
148 9 0.08
149 14 0.13
150 18 0.16
151 3 0.03
ACGTcount: A:0.52, C:0.11, G:0.19, T:0.18
Consensus pattern (143 bp):
AGATAAGAATCTGACGCGAAAAATGAATAAAACTTCAGTCACAATCAAATAAAAAAGGAGATAGA
ATTCAAGAAGAAGAATGCAAAGTTGAAGTCAAATGCTTTCAAAAAAAAAAAAGAACAAAGAAAAG
ACGTACACCTCGG
Found at i:9422257 original size:107 final size:107
Alignment explanation
Indices: 9422096--9422352 Score: 408
Period size: 107 Copynumber: 2.4 Consensus size: 107
9422086 ATTGATGATG
* ** * *
9422096 TCTTGATCAT-TTTGTTTTTTTGATCATTGGTGTTGTCCTGATCATCTTTATATTTTCAACCATT
1 TCTTGATCATCTTTGTTTTCTCAACCGTTGGTGTTGTCCTGATCATCTTTATATTTTCAACCATT
*
9422160 AGTGTTGTTTTGTTCATCTTATCTTCTCGACTATTGGTATTA
66 AGTGTTGTTTTGTTCATCTTATCTTCCCGACTATTGGTATTA
*
9422202 TCTTGATCATCTTTGTTTTCTCAACCGTTGGTGTTGTCCTTATCATCTTTATATTTTCAACCATT
1 TCTTGATCATCTTTGTTTTCTCAACCGTTGGTGTTGTCCTGATCATCTTTATATTTTCAACCATT
9422267 AGTGTTGTTTTGTTCATCTTATCTTCCCGACTATTGGTATTA
66 AGTGTTGTTTTGTTCATCTTATCTTCCCGACTATTGGTATTA
* * * *
9422309 TCTTAATCATCTTTGTCTTCTCCACCGTTGGTGTTATCCTGATC
1 TCTTGATCATCTTTGTTTTCTCAACCGTTGGTGTTGTCCTGATC
9422353 TTCTCGACCT
Statistics
Matches: 138, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
106 10 0.07
107 128 0.93
ACGTcount: A:0.16, C:0.19, G:0.14, T:0.51
Consensus pattern (107 bp):
TCTTGATCATCTTTGTTTTCTCAACCGTTGGTGTTGTCCTGATCATCTTTATATTTTCAACCATT
AGTGTTGTTTTGTTCATCTTATCTTCCCGACTATTGGTATTA
Found at i:9422284 original size:36 final size:36
Alignment explanation
Indices: 9422094--9422286 Score: 151
Period size: 36 Copynumber: 5.4 Consensus size: 36
9422084 CCATTGATGA
* * ** * *
9422094 TGTCTTGATCAT-TTTGTTTTTTTGATCATTGGTGT
1 TGTCTTGATCATCTTTATATTTTCAACCATTAGTGT
*
9422129 TGTCCTGATCATCTTTATATTTTCAACCATTAGTGT
1 TGTCTTGATCATCTTTATATTTTCAACCATTAGTGT
* * * * * * * *
9422165 TGTTTTGTTCATC-TTATCTTCTCGACTATTGGTAT
1 TGTCTTGATCATCTTTATATTTTCAACCATTAGTGT
* * * *
9422200 TATCTTGATCATCTTTGT-TTTCTCAACCGTTGGTGT
1 TGTCTTGATCATCTTTATATTT-TCAACCATTAGTGT
9422236 TGTCCTT-ATCATCTTTATATTTTCAACCATTAGTGT
1 TGT-CTTGATCATCTTTATATTTTCAACCATTAGTGT
* *
9422272 TGTTTTGTTCATCTT
1 TGTCTTGATCATCTT
9422287 ATCTTCCCGA
Statistics
Matches: 121, Mismatches: 31, Indels: 11
0.74 0.19 0.07
Matches are distributed among these distances:
35 41 0.34
36 74 0.61
37 6 0.05
ACGTcount: A:0.16, C:0.17, G:0.14, T:0.53
Consensus pattern (36 bp):
TGTCTTGATCATCTTTATATTTTCAACCATTAGTGT
Found at i:9422340 original size:36 final size:36
Alignment explanation
Indices: 9422120--9422352 Score: 166
Period size: 36 Copynumber: 6.5 Consensus size: 36
9422110 TTTTTTTGAT
* * * *
9422120 CATTGGTGTTGTCCTGATCATCTTTATATTTTCAAC
1 CATTGGTGTTATCTTGATCATCTTTATCTTCTCAAC
* * * * *
9422156 CATTAGTGTTGTTTTGTTCATC-TTATCTTCTCGAC
1 CATTGGTGTTATCTTGATCATCTTTATCTTCTCAAC
* * * *
9422191 TATTGGTATTATCTTGATCATCTTTGTTTTCTCAAC
1 CATTGGTGTTATCTTGATCATCTTTATCTTCTCAAC
* * * *
9422227 CGTTGGTGTTGTCCTT-ATCATCTTTATATTTTCAAC
1 CATTGGTGTTAT-CTTGATCATCTTTATCTTCTCAAC
* * * * * *
9422263 CATTAGTGTTGTTTTGTTCATC-TTATCTTCCCGAC
1 CATTGGTGTTATCTTGATCATCTTTATCTTCTCAAC
* * * * *
9422298 TATTGGTATTATCTTAATCATCTTTGTCTTCTCCAC
1 CATTGGTGTTATCTTGATCATCTTTATCTTCTCAAC
* *
9422334 CGTTGGTGTTATCCTGATC
1 CATTGGTGTTATCTTGATC
9422353 TTCTCGACCT
Statistics
Matches: 147, Mismatches: 46, Indels: 8
0.73 0.23 0.04
Matches are distributed among these distances:
35 52 0.35
36 92 0.63
37 3 0.02
ACGTcount: A:0.17, C:0.20, G:0.14, T:0.49
Consensus pattern (36 bp):
CATTGGTGTTATCTTGATCATCTTTATCTTCTCAAC
Found at i:9422366 original size:27 final size:27
Alignment explanation
Indices: 9422324--9422379 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
9422314 ATCATCTTTG
9422324 TCTTCTCCACCGTTGGTGTTATCCTGA
1 TCTTCTCCACCGTTGGTGTTATCCTGA
* * *
9422351 TCTTCTCGACCTTTGGTGTTGTCCTGA
1 TCTTCTCCACCGTTGGTGTTATCCTGA
9422378 TC
1 TC
9422380 ATCTTTATCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.09, C:0.29, G:0.20, T:0.43
Consensus pattern (27 bp):
TCTTCTCCACCGTTGGTGTTATCCTGA
Found at i:9422406 original size:36 final size:35
Alignment explanation
Indices: 9422366--9422461 Score: 108
Period size: 35 Copynumber: 2.8 Consensus size: 35
9422356 TCGACCTTTG
*
9422366 GTGTTGTCCTGATCATCTTTATCTTTCTGAC-TATCA
1 GTGTTGTCCTAATCATCTTTAT-TTTCTGACTTA-CA
* *
9422402 GTGTTGTCCCAATCATTTTTATTTTCTGACTTACA
1 GTGTTGTCCTAATCATCTTTATTTTCTGACTTACA
* *
9422437 GTGTTATCCTAGTCA--TTTATTTTCT
1 GTGTTGTCCTAATCATCTTTATTTTCT
9422462 CAACCATTGG
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
33 10 0.19
35 22 0.42
36 21 0.40
ACGTcount: A:0.18, C:0.20, G:0.12, T:0.50
Consensus pattern (35 bp):
GTGTTGTCCTAATCATCTTTATTTTCTGACTTACA
Found at i:9422439 original size:35 final size:36
Alignment explanation
Indices: 9422366--9422492 Score: 102
Period size: 35 Copynumber: 3.6 Consensus size: 36
9422356 TCGACCTTTG
**
9422366 GTGTTGTCCTGATCATCTTTATCTTTCTGACTATCA
1 GTGTTGTCCCAATCATCTTTATCTTTCTGACTATCA
*
9422402 GTGTTGTCCCAATCATTTTTAT-TTTCTGACT-TACA
1 GTGTTGTCCCAATCATCTTTATCTTTCTGACTAT-CA
* * * * * **
9422437 GTGTTATCCTAGTCA--TTTAT-TTTCTCAACCATTG
1 GTGTTGTCCCAATCATCTTTATCTTTCT-GACTATCA
*
9422471 GTGTTGTCACAATCATCTTTAT
1 GTGTTGTCCCAATCATCTTTAT
9422493 TTTTTTTGAC
Statistics
Matches: 72, Mismatches: 14, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
33 10 0.14
34 14 0.19
35 24 0.33
36 24 0.33
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (36 bp):
GTGTTGTCCCAATCATCTTTATCTTTCTGACTATCA
Found at i:9422604 original size:36 final size:35
Alignment explanation
Indices: 9422564--9422678 Score: 122
Period size: 36 Copynumber: 3.2 Consensus size: 35
9422554 ATTATATTTG
* * *
9422564 TTTTTTCGATCGTTGGTGTTGTCCCAGTCATCTTTA
1 TTTTTTCGA-CATTGGTGTTATCTCAGTCATCTTTA
* * * *
9422600 TTTTTTTGACCTATGATGTTATCTCAGTCATATTTA
1 TTTTTTCGACAT-TGGTGTTATCTCAGTCATCTTTA
* *
9422636 TTTTTTCAACTATTGGTGTTATCTCAATCATCTTTA
1 TTTTTTCGAC-ATTGGTGTTATCTCAGTCATCTTTA
9422672 TTTTTTC
1 TTTTTTC
9422679 AACCTGCGAT
Statistics
Matches: 65, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
35 2 0.03
36 62 0.95
37 1 0.02
ACGTcount: A:0.17, C:0.17, G:0.12, T:0.54
Consensus pattern (35 bp):
TTTTTTCGACATTGGTGTTATCTCAGTCATCTTTA
Found at i:9422605 original size:72 final size:72
Alignment explanation
Indices: 9422529--9422677 Score: 167
Period size: 72 Copynumber: 2.1 Consensus size: 72
9422519 ATCATTTTCA
* * * * * * * *
9422529 TTTTTTGATCTATGAAGTTGTAC-CAATTATATTTGTTTTTTCGA-TCGTTGGTGTTGTCCCAGT
1 TTTTTTGACCTATGAAGTTAT-CTCAATCATATTTATTTTTTCAACT-ATTGGTGTTATCCCAAT
9422592 CATCTTTAT
64 CATCTTTAT
* * *
9422601 TTTTTTGACCTATGATGTTATCTCAGTCATATTTATTTTTTCAACTATTGGTGTTATCTCAATCA
1 TTTTTTGACCTATGAAGTTATCTCAATCATATTTATTTTTTCAACTATTGGTGTTATCCCAATCA
9422666 TCTTTAT
66 TCTTTAT
9422673 TTTTT
1 TTTTT
9422678 CAACCTGCGA
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
71 1 0.02
72 62 0.97
73 1 0.02
ACGTcount: A:0.19, C:0.14, G:0.13, T:0.54
Consensus pattern (72 bp):
TTTTTTGACCTATGAAGTTATCTCAATCATATTTATTTTTTCAACTATTGGTGTTATCCCAATCA
TCTTTAT
Found at i:9422676 original size:108 final size:108
Alignment explanation
Indices: 9422468--9422678 Score: 234
Period size: 108 Copynumber: 2.0 Consensus size: 108
9422458 TTCTCAACCA
9422468 TTGGTGTTGTCACAATCATCTTTATTTTTTTTGACCTACATTGCTATCTCGATCATTTTCATTTT
1 TTGGTGTTGTCACAATCATCTTTATTTTTTTTGACCTACATTGCTATCTCGATCATTTTCATTTT
* * * * *
9422533 TTGATCTATGAAGTTGTACCAATTATATTTGTTTTTTCGATCG
66 TTCAACTATGAAGTTATACCAATCATATTTATTTTTTCGATCG
* * * *
9422576 TTGGTGTTGTCCCAGTCATCTTTA-TTTTTTTGACCTATGA-TGTTATCTC-AGTCATATTT-AT
1 TTGGTGTTGTCACAATCATCTTTATTTTTTTTGACCTA-CATTGCTATCTCGA-TCAT-TTTCAT
** *
9422637 TTTTTCAACTATTGGTGTTAT-CTCAATCATCTTTATTTTTTC
63 TTTTTCAACTA-TGAAGTTATAC-CAATCATATTTATTTTTTC
9422679 AACCTGCGAT
Statistics
Matches: 86, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
106 1 0.01
107 37 0.43
108 48 0.56
ACGTcount: A:0.19, C:0.16, G:0.12, T:0.52
Consensus pattern (108 bp):
TTGGTGTTGTCACAATCATCTTTATTTTTTTTGACCTACATTGCTATCTCGATCATTTTCATTTT
TTCAACTATGAAGTTATACCAATCATATTTATTTTTTCGATCG
Found at i:9422791 original size:36 final size:36
Alignment explanation
Indices: 9422577--9422817 Score: 159
Period size: 36 Copynumber: 6.7 Consensus size: 36
9422567 TTTCGATCGT
* * * ** * *
9422577 TGGTGTTGTCCCAGTCATCTTTATTTTTTTGACCTA
1 TGGTGTTGTCTCAATCATATTTATTTTTTCAACTTG
* * *
9422613 TGATGTTATCTCAGTCATATTTATTTTTTCAACTAT-
1 TGGTGTTGTCTCAATCATATTTATTTTTTCAACT-TG
* * *
9422649 TGGTGTTATCTCAATCATCTTTATTTTTTCAACCTG
1 TGGTGTTGTCTCAATCATATTTATTTTTTCAACTTG
* * * * *
9422685 CGATGTTG-CCCAAATTATATTCA-TTTTTCTAA-TTG
1 TGGTGTTGTCTC-AATCATATTTATTTTTTC-AACTTG
* * * *
9422720 TTGGTATTGTCGCAATCATTTTTATTTTTT-GACTTG
1 -TGGTGTTGTCTCAATCATATTTATTTTTTCAACTTG
* *
9422756 TGGTGTTGTTTTAATCATATTTATTTTTTCAACTTG
1 TGGTGTTGTCTCAATCATATTTATTTTTTCAACTTG
* * * *
9422792 AGATGTTGTCTTAGTCATATTTATTT
1 TGGTGTTGTCTCAATCATATTTATTT
9422818 GTTAACCTAC
Statistics
Matches: 159, Mismatches: 37, Indels: 18
0.74 0.17 0.08
Matches are distributed among these distances:
35 36 0.23
36 115 0.72
37 8 0.05
ACGTcount: A:0.20, C:0.14, G:0.13, T:0.52
Consensus pattern (36 bp):
TGGTGTTGTCTCAATCATATTTATTTTTTCAACTTG
Found at i:9423071 original size:36 final size:36
Alignment explanation
Indices: 9422982--9423141 Score: 128
Period size: 36 Copynumber: 4.5 Consensus size: 36
9422972 ATTGTTCTGG
* *
9422982 TCATATTTA-TTTTTTAACTCATGGTGTTGTCCTAA
1 TCATATTTATTTTTTTGACTCATGGTGTTATCCTAA
* * * * *
9423017 TCATATATGTTTTCTTGACTGATGGTGTTATCCTGA
1 TCATATTTATTTTTTTGACTCATGGTGTTATCCTAA
* * *
9423053 TCATCTTTATTTTTTTGACTTACGGTGTTATTCC-AA
1 TCATATTTATTTTTTTGACTCATGGTGTTA-TCCTAA
* * ** * *
9423089 TCATTTTTA-TTTTTAGACTTGTAGTATTATCCTAA
1 TCATATTTATTTTTTTGACTCATGGTGTTATCCTAA
**
9423124 TTGTATTTATTTTTTTGA
1 TCATATTTATTTTTTTGA
9423142 TCGTTGGTGT
Statistics
Matches: 97, Mismatches: 24, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
34 3 0.03
35 30 0.31
36 61 0.63
37 3 0.03
ACGTcount: A:0.21, C:0.12, G:0.12, T:0.54
Consensus pattern (36 bp):
TCATATTTATTTTTTTGACTCATGGTGTTATCCTAA
Found at i:9423221 original size:35 final size:35
Alignment explanation
Indices: 9423182--9423255 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 35
9423172 TTACCTACAA
* *
9423182 TGTTGT-CCACATCATCGTTATTTTTTGACTTGCAG
1 TGTTGTCCCA-ATCATCGTTATATTCTGACTTGCAG
* *
9423217 TGTTGTCCCAATCATCTTTATATTCTGACTTGTAG
1 TGTTGTCCCAATCATCGTTATATTCTGACTTGCAG
9423252 TGTT
1 TGTT
9423256 ATCTCAGTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
35 31 0.91
36 3 0.09
ACGTcount: A:0.18, C:0.19, G:0.16, T:0.47
Consensus pattern (35 bp):
TGTTGTCCCAATCATCGTTATATTCTGACTTGCAG
Found at i:9423328 original size:37 final size:36
Alignment explanation
Indices: 9423287--9423424 Score: 141
Period size: 37 Copynumber: 3.8 Consensus size: 36
9423277 TCGACCGTTA
*
9423287 GTGTTGTCTCGATCATCTTTATTTTTTTTGACCTGTG
1 GTGTTGTCTCGATCATCTTTATTTTTTTT-ACCTATG
* * * * *
9423324 GTGTTGTCTCGGTCATTTTTGTTTTTTTTATCATTTG
1 GTGTTGTCTCGATCATCTTTATTTTTTTTA-CCTATG
* * **
9423361 GTGTTATCCCGATCATCTTTATTTTTTCAACCTATG
1 GTGTTGTCTCGATCATCTTTATTTTTTTTACCTATG
* * *
9423397 GTGTTGTTTCGGTCATCTTAATTTTTTT
1 GTGTTGTCTCGATCATCTTTATTTTTTT
9423425 GATCATTTTT
Statistics
Matches: 80, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
36 27 0.34
37 53 0.66
ACGTcount: A:0.12, C:0.15, G:0.17, T:0.56
Consensus pattern (36 bp):
GTGTTGTCTCGATCATCTTTATTTTTTTTACCTATG
Found at i:9423386 original size:73 final size:74
Alignment explanation
Indices: 9423287--9423432 Score: 195
Period size: 73 Copynumber: 2.0 Consensus size: 74
9423277 TCGACCGTTA
* * ** * * **
9423287 GTGTTGTCTCGATCATCTTTATTTTTTTTGACCTGTGGTGTTGTCTCGGTCATTTTTGTTTTTTT
1 GTGTTATCCCGATCATCTTTATTTTTTTCAACCTATGGTGTTGTCTCGGTCATCTTAATTTTTTT
*
9423352 TATCATTTG
66 GATCATTTG
*
9423361 GTGTTATCCCGATCATCTTTA-TTTTTTCAACCTATGGTGTTGTTTCGGTCATCTTAATTTTTTT
1 GTGTTATCCCGATCATCTTTATTTTTTTCAACCTATGGTGTTGTCTCGGTCATCTTAATTTTTTT
9423425 GATCATTT
66 GATCATTT
9423433 TTATTTTTTG
Statistics
Matches: 62, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
73 43 0.69
74 19 0.31
ACGTcount: A:0.13, C:0.15, G:0.16, T:0.55
Consensus pattern (74 bp):
GTGTTATCCCGATCATCTTTATTTTTTTCAACCTATGGTGTTGTCTCGGTCATCTTAATTTTTTT
GATCATTTG
Found at i:9423464 original size:53 final size:54
Alignment explanation
Indices: 9423371--9423479 Score: 141
Period size: 53 Copynumber: 2.0 Consensus size: 54
9423361 GTGTTATCCC
* *
9423371 GATCATCTTTATTTTTTCAACCTATGGTGTTGTTTCGGTCATCTTAATTTTTTT
1 GATCATCTTTATTTTTTCAACCTACGGTGTTATTTCGGTCATCTTAATTTTTTT
* * * *
9423425 GATCATTTTTATTTTTT-GACTTACGGTGTTATCTT-GGTCATCTTTATTTTTTT
1 GATCATCTTTATTTTTTCAACCTACGGTGTTAT-TTCGGTCATCTTAATTTTTTT
9423478 GA
1 GA
9423480 CTTATAGTGT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
53 30 0.62
54 18 0.38
ACGTcount: A:0.17, C:0.13, G:0.14, T:0.57
Consensus pattern (54 bp):
GATCATCTTTATTTTTTCAACCTACGGTGTTATTTCGGTCATCTTAATTTTTTT
Found at i:9423481 original size:36 final size:36
Alignment explanation
Indices: 9423427--9423583 Score: 113
Period size: 36 Copynumber: 4.4 Consensus size: 36
9423417 ATTTTTTTGA
* *
9423427 TCATTTTTA-TTTTTTGACTTACGGTGTTATCTT-GG
1 TCATATTTATTTTTTTGACTTACAGTGTTAT-TTCGG
* * *
9423462 TCATCTTTATTTTTTTGACTTATAGTGTTATTTCTG
1 TCATATTTATTTTTTTGACTTACAGTGTTATTTCGG
** * * ***
9423498 TCATATTTATTTTTTCAACTTGCAATGTTGCCTCGG
1 TCATATTTATTTTTTTGACTTACAGTGTTATTTCGG
* * * * * *
9423534 TCATTTTTATTTTTTTAACTTGC-GATGTTGTTCCAG
1 TCATATTTATTTTTTTGACTTACAG-TGTTATTTCGG
9423570 TCATATTTATTTTT
1 TCATATTTATTTTT
9423584 CAAAAAAAAA
Statistics
Matches: 97, Mismatches: 22, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
35 10 0.10
36 87 0.90
ACGTcount: A:0.17, C:0.13, G:0.13, T:0.57
Consensus pattern (36 bp):
TCATATTTATTTTTTTGACTTACAGTGTTATTTCGG
Found at i:9423607 original size:13 final size:12
Alignment explanation
Indices: 9423587--9423646 Score: 66
Period size: 13 Copynumber: 4.8 Consensus size: 12
9423577 TATTTTTCAA
9423587 AAAAAAAAAAAC
1 AAAAAAAAAAAC
*
9423599 AAAACAAAAAAGC
1 AAAA-AAAAAAAC
* *
9423612 AACAAACAAAAGC
1 AA-AAAAAAAAAC
9423625 AAAAAATAAAAAC
1 AAAAAA-AAAAAC
9423638 AAAAAAAAA
1 AAAAAAAAA
9423647 GGAGAACAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
12 10 0.24
13 29 0.71
14 2 0.05
ACGTcount: A:0.83, C:0.12, G:0.03, T:0.02
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:9423618 original size:20 final size:18
Alignment explanation
Indices: 9423586--9423646 Score: 70
Period size: 19 Copynumber: 3.3 Consensus size: 18
9423576 TTATTTTTCA
*
9423586 AAAAAAAAAAAACAAAAC
1 AAAAAACAAAAACAAAAC
9423604 AAAAAAGCAACAAACAAAAGC
1 AAAAAA-CAA-AAACAAAA-C
*
9423625 AAAAAATAAAAACAAAA-
1 AAAAAACAAAAACAAAAC
9423642 AAAAA
1 AAAAA
9423647 GGAGAACAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
17 5 0.13
18 6 0.16
19 10 0.26
20 10 0.26
21 7 0.18
ACGTcount: A:0.84, C:0.11, G:0.03, T:0.02
Consensus pattern (18 bp):
AAAAAACAAAAACAAAAC
Found at i:9426392 original size:13 final size:13
Alignment explanation
Indices: 9426374--9426398 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9426364 GTTAAAATTG
9426374 TAAATTGAAACCT
1 TAAATTGAAACCT
9426387 TAAATTGAAACC
1 TAAATTGAAACC
9426399 CCAAACTCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.08, T:0.28
Consensus pattern (13 bp):
TAAATTGAAACCT
Found at i:9429593 original size:41 final size:41
Alignment explanation
Indices: 9429540--9429618 Score: 149
Period size: 41 Copynumber: 1.9 Consensus size: 41
9429530 GATATCATTC
*
9429540 CACAGGGTTTAGTTAAAAAGTCTAGACTAAGTACCAATCAT
1 CACAGGGATTAGTTAAAAAGTCTAGACTAAGTACCAATCAT
9429581 CACAGGGATTAGTTAAAAAGTCTAGACTAAGTACCAAT
1 CACAGGGATTAGTTAAAAAGTCTAGACTAAGTACCAAT
9429619 TATCTTCACA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.41, C:0.16, G:0.18, T:0.25
Consensus pattern (41 bp):
CACAGGGATTAGTTAAAAAGTCTAGACTAAGTACCAATCAT
Found at i:9430819 original size:16 final size:15
Alignment explanation
Indices: 9430798--9430841 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 15
9430788 GGAAACTGCT
*
9430798 AGAAAGAAAATTAGCA
1 AGAAAGAAAAAT-GCA
9430814 AGAAAGTAAAAATGCA
1 AGAAAG-AAAAATGCA
9430830 AGAAATGAAAAA
1 AGAAA-GAAAAA
9430842 AAAATCTACA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
16 19 0.76
17 6 0.24
ACGTcount: A:0.66, C:0.05, G:0.18, T:0.11
Consensus pattern (15 bp):
AGAAAGAAAAATGCA
Found at i:9433316 original size:32 final size:35
Alignment explanation
Indices: 9433278--9433347 Score: 94
Period size: 32 Copynumber: 2.1 Consensus size: 35
9433268 CTTTTATTTG
9433278 AAATAAAAACATACATTA-ATAC-A-AAAAAT-TAA
1 AAATAAAAACATAC-TTAGATACAATAAAAATATAA
*
9433310 AAATAAAAACTTACTTAGATACAATAAAAATATAA
1 AAATAAAAACATACTTAGATACAATAAAAATATAA
9433345 AAA
1 AAA
9433348 CTTACTTAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
31 3 0.09
32 17 0.52
33 1 0.03
34 6 0.18
35 6 0.18
ACGTcount: A:0.67, C:0.09, G:0.01, T:0.23
Consensus pattern (35 bp):
AAATAAAAACATACTTAGATACAATAAAAATATAA
Found at i:9433351 original size:29 final size:28
Alignment explanation
Indices: 9433302--9433371 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 28
9433292 ATTAATACAA
* *
9433302 AAAATTAAAAATAAAAACTTACTTAGAT
1 AAAATAAAAAATAAAAACTTACTTAAAT
*
9433330 ACAATAAAAATATAAAAACTTACTTAAAT
1 AAAATAAAAA-ATAAAAACTTACTTAAAT
9433359 AAAATAATAAAAT
1 AAAATAA-AAAAT
9433372 TCACAAGCTC
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
28 8 0.22
29 25 0.69
30 3 0.08
ACGTcount: A:0.64, C:0.07, G:0.01, T:0.27
Consensus pattern (28 bp):
AAAATAAAAAATAAAAACTTACTTAAAT
Found at i:9436713 original size:3 final size:3
Alignment explanation
Indices: 9436705--9436740 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
9436695 GCTATACAAG
9436705 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
9436741 CACAGCTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Done.