Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14313602
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 50000 characters in sequence are not A, C, G, or T
File 46 of 74
Found at i:9445452 original size:16 final size:18
Alignment explanation
Indices: 9445418--9445457 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
9445408 TCGATTATAA
*
9445418 TTATATATTTTTATTAAT
1 TTATATATTTTTATAAAT
9445436 TTATAT-TTTTTA-AAAT
1 TTATATATTTTTATAAAT
9445452 TT-TATA
1 TTATATA
9445458 AAAATAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
15 3 0.15
16 5 0.25
17 6 0.30
18 6 0.30
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TTATATATTTTTATAAAT
Found at i:9445892 original size:27 final size:27
Alignment explanation
Indices: 9445862--9445927 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
9445852 GATTTTTTAT
* * *
9445862 TAAAAATCAATAAATTATGTATAATAA
1 TAAAATTCAATAAAATATATATAATAA
9445889 TAAAATTCAATAAAATATATATAATAA
1 TAAAATTCAATAAAATATATATAATAA
9445916 TAAAATTCAATA
1 TAAAATTCAATA
9445928 TTAAGTCATT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.33
Consensus pattern (27 bp):
TAAAATTCAATAAAATATATATAATAA
Found at i:9446941 original size:3 final size:3
Alignment explanation
Indices: 9446933--9447063 Score: 129
Period size: 3 Copynumber: 44.0 Consensus size: 3
9446923 TTACTTGGTT
** *
9446933 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT- TTA CCA TTA TCA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * ** * * *
9446980 TTA TTA TTA TAA TTA TCA TTA TTA ACA TTA TCA TTA TCA TTA TCA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
9447028 TCA TTA TCA TTA TCA TCA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
9447064 GTTTTTGGGT
Statistics
Matches: 101, Mismatches: 26, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
2 2 0.02
3 99 0.98
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.56
Consensus pattern (3 bp):
TTA
Found at i:9457554 original size:18 final size:18
Alignment explanation
Indices: 9457531--9457570 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
9457521 TTATTTGATG
*
9457531 ATATTGATATTGGTGGTT
1 ATATTGATATTGATGGTT
9457549 ATATTGATATTGATGGTT
1 ATATTGATATTGATGGTT
9457567 ATAT
1 ATAT
9457571 CCTTGTTCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.50
Consensus pattern (18 bp):
ATATTGATATTGATGGTT
Found at i:9460748 original size:38 final size:38
Alignment explanation
Indices: 9460699--9460775 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
9460689 TAAACAATGC
* * *
9460699 ATGGCAAAACTCCTCCTCAATTTGTGCATCCTAATCCA
1 ATGGCAAAACTCCCCCTCAATTTATACATCCTAATCCA
9460737 ATGGCAAAACTCCCCCTCAATTTATACATCCTAATCCA
1 ATGGCAAAACTCCCCCTCAATTTATACATCCTAATCCA
9460775 A
1 A
9460776 CACAACTTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.32, C:0.32, G:0.08, T:0.27
Consensus pattern (38 bp):
ATGGCAAAACTCCCCCTCAATTTATACATCCTAATCCA
Found at i:9467432 original size:29 final size:29
Alignment explanation
Indices: 9467399--9467454 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
9467389 TATCTTAAAG
9467399 AGACAATTAGAGTAAAAGTTTTTAAAAAA
1 AGACAATTAGAGTAAAAGTTTTTAAAAAA
* *
9467428 AGACAATTATAGTATAAGTTTTTAAAA
1 AGACAATTAGAGTAAAAGTTTTTAAAA
9467455 CTTTGAAACA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.52, C:0.04, G:0.12, T:0.32
Consensus pattern (29 bp):
AGACAATTAGAGTAAAAGTTTTTAAAAAA
Found at i:9467468 original size:91 final size:91
Alignment explanation
Indices: 9467366--9467547 Score: 278
Period size: 91 Copynumber: 2.0 Consensus size: 91
9467356 AAAAACACCC
*
9467366 TTGAAATAATTAAAGATATCATATATCTTAAAGAGACAATT-AGAGTAAAAGTTTTTAAAAAAAG
1 TTGAAACAATTAAAGATATCATATATCTTAAAGAGACAATTGA-AGTAAAAGTTTTTAAAAAAAG
*
9467430 ACAATT-ATAGTATAAGTTTTTAAAACT
65 ACAATTGA-AGTAAAAGTTTTTAAAACT
* * *
9467457 TTGAAACAATTAAAGATATCTTATATCTTAAAGAGACAATTGAAGTAAAAGTTTTTTAGAAAAGA
1 TTGAAACAATTAAAGATATCATATATCTTAAAGAGACAATTGAAGTAAAAGTTTTTAAAAAAAGA
*
9467522 TAATTGAAGTAAAAGTTTTTAAAACT
66 CAATTGAAGTAAAAGTTTTTAAAACT
9467548 ATCTCCTATC
Statistics
Matches: 83, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
91 81 0.98
92 2 0.02
ACGTcount: A:0.48, C:0.05, G:0.12, T:0.34
Consensus pattern (91 bp):
TTGAAACAATTAAAGATATCATATATCTTAAAGAGACAATTGAAGTAAAAGTTTTTAAAAAAAGA
CAATTGAAGTAAAAGTTTTTAAAACT
Found at i:9470032 original size:6 final size:6
Alignment explanation
Indices: 9470012--9470134 Score: 86
Period size: 6 Copynumber: 20.2 Consensus size: 6
9470002 AACTTTTGAC
* * * *
9470012 TAAAA- TAACAT TAAAAT TAAAAT TAAAAT TAAAAT CAAAAC CAAAAT
1 TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT
* * ** * * * *
9470059 CACAGC CAAAAT TAAAAT AAAAAAT TAAAAT CAAAAT CAAAAT TAAAAT
1 TAAAAT TAAAAT TAAAAT -TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT
* *
9470108 TAAAAAT CAAAAT CAAAAT TGAAAAT T
1 T-AAAAT TAAAAT TAAAAT T-AAAAT T
9470135 TTGGGTTTTT
Statistics
Matches: 96, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
5 4 0.04
6 76 0.79
7 16 0.17
ACGTcount: A:0.65, C:0.10, G:0.02, T:0.24
Consensus pattern (6 bp):
TAAAAT
Found at i:9470084 original size:13 final size:12
Alignment explanation
Indices: 9470066--9470126 Score: 59
Period size: 13 Copynumber: 4.9 Consensus size: 12
9470056 AATCACAGCC
9470066 AAAATTAAAATAA
1 AAAATTAAAAT-A
*
9470079 AAAATTAAAATC
1 AAAATTAAAATA
* *
9470091 AAAATCAAAATT
1 AAAATTAAAATA
*
9470103 AAAATTAAAAATC
1 AAAATT-AAAATA
*
9470116 AAAATCAAAAT
1 AAAATTAAAAT
9470127 TGAAAATTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
12 20 0.49
13 21 0.51
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (12 bp):
AAAATTAAAATA
Found at i:9470093 original size:25 final size:25
Alignment explanation
Indices: 9470065--9470126 Score: 90
Period size: 25 Copynumber: 2.5 Consensus size: 25
9470055 AAATCACAGC
*
9470065 CAAAATTAAAATAAAAAATT-AAAAT
1 CAAAATCAAAAT-AAAAATTAAAAAT
*
9470090 CAAAATCAAAATTAAAATTAAAAAT
1 CAAAATCAAAATAAAAATTAAAAAT
9470115 CAAAATCAAAAT
1 CAAAATCAAAAT
9470127 TGAAAATTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
24 6 0.18
25 28 0.82
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.23
Consensus pattern (25 bp):
CAAAATCAAAATAAAAATTAAAAAT
Found at i:9470100 original size:31 final size:30
Alignment explanation
Indices: 9470024--9470126 Score: 116
Period size: 31 Copynumber: 3.4 Consensus size: 30
9470014 AAATAACATT
* * * *
9470024 AAAATTAAAATTAAAATTAAAATCAAAACC
1 AAAATCAAAATCAAAATTAAAATAAAAATC
* ** *
9470054 AAAATCACAGCCAAAATTAAAATAAAAAATT
1 AAAATCAAAATCAAAATTAAAAT-AAAAATC
9470085 AAAATCAAAATCAAAATTAAAATTAAAAATC
1 AAAATCAAAATCAAAATTAAAA-TAAAAATC
9470116 AAAATCAAAAT
1 AAAATCAAAAT
9470127 TGAAAATTTT
Statistics
Matches: 59, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
30 18 0.31
31 40 0.68
32 1 0.02
ACGTcount: A:0.67, C:0.11, G:0.01, T:0.21
Consensus pattern (30 bp):
AAAATCAAAATCAAAATTAAAATAAAAATC
Found at i:9470497 original size:17 final size:17
Alignment explanation
Indices: 9470460--9470598 Score: 68
Period size: 17 Copynumber: 7.9 Consensus size: 17
9470450 TCAAGTTTTC
* **
9470460 CAAAGACTCAAAATTTG
1 CAAAGATTCAAAATTCA
9470477 CAAAGATTCAAAATTCA
1 CAAAGATTCAAAATTCA
* *
9470494 CAAAAGA-TCTAAGATTCG
1 C-AAAGATTC-AAAATTCA
*
9470512 TAAAGATTCAAATATTTGCA
1 CAAAGATTCAAA-A-TT-CA
* **
9470532 -AAATATTCAAGTTTCA
1 CAAAGATTCAAAATTCA
* * *
9470548 TAAAAACTCAAAATTTGCA
1 CAAAGATTCAAAA-TT-CA
*
9470567 -AAAGATTCAAATTTCA
1 CAAAGATTCAAAATTCA
*
9470583 CAAAAATTCAAAATTC
1 CAAAGATTCAAAATTC
9470599 GTGAAAGATT
Statistics
Matches: 92, Mismatches: 20, Indels: 20
0.70 0.15 0.15
Matches are distributed among these distances:
16 4 0.04
17 49 0.53
18 25 0.27
19 13 0.14
20 1 0.01
ACGTcount: A:0.49, C:0.15, G:0.08, T:0.28
Consensus pattern (17 bp):
CAAAGATTCAAAATTCA
Found at i:9470501 original size:18 final size:18
Alignment explanation
Indices: 9470478--9470598 Score: 79
Period size: 18 Copynumber: 6.8 Consensus size: 18
9470468 CAAAATTTGC
9470478 AAAGATTCAAAATTCACA
1 AAAGATTCAAAATTCACA
* **
9470496 AAAGA-TCTAAGATTC-GT
1 AAAGATTC-AAAATTCACA
**
9470513 AAAGATTCAAATATTTGCA
1 AAAGATTCAAA-ATTCACA
* ** *
9470532 AAATATTCAAGTTTCATA
1 AAAGATTCAAAATTCACA
* **
9470550 AAA-ACTCAAAATTTGCA
1 AAAGATTCAAAATTCACA
*
9470567 AAAGATTCAAATTTCACA
1 AAAGATTCAAAATTCACA
9470585 AAA-ATTCAAAATTC
1 AAAGATTCAAAATTC
9470599 GTGAAAGATT
Statistics
Matches: 74, Mismatches: 24, Indels: 11
0.68 0.22 0.10
Matches are distributed among these distances:
17 30 0.41
18 35 0.47
19 9 0.12
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (18 bp):
AAAGATTCAAAATTCACA
Found at i:9470540 original size:88 final size:88
Alignment explanation
Indices: 9470417--9470628 Score: 256
Period size: 88 Copynumber: 2.4 Consensus size: 88
9470407 AAAGGATTGA
* * ** *
9470417 AAGATTCGTAAA-ATTCCAAGATTCACAAAATATTCAAGTTTTC-CAAAGACTCAAAATTTGC-A
1 AAGATTCGTAAAGATTCAAATATTTGCAAAATATTCAAG-TTTCACAAAAACTCAAAATTTGCAA
9470479 AAGATTCAAAATTCACAAAAGA-TC
65 AAGATTCAAAATTCACAAAA-ATTC
*
9470503 TAAGATTCGTAAAGATTCAAATATTTGCAAAATATTCAAGTTTCATAAAAACTCAAAATTTGCAA
1 -AAGATTCGTAAAGATTCAAATATTTGCAAAATATTCAAGTTTCACAAAAACTCAAAATTTGCAA
*
9470568 AAGATTCAAATTTCACAAAAATTC
65 AAGATTCAAAATTCACAAAAATTC
* * *
9470592 AAAATTCGTGAAAGATTCAAGT-TTTG-AAAAAATTCAA
1 AAGATTCGT-AAAGATTCAAATATTTGCAAAATATTCAA
9470629 AATCCAAAAG
Statistics
Matches: 110, Mismatches: 10, Indels: 10
0.85 0.08 0.08
Matches are distributed among these distances:
87 26 0.24
88 51 0.46
89 33 0.30
ACGTcount: A:0.47, C:0.14, G:0.09, T:0.29
Consensus pattern (88 bp):
AAGATTCGTAAAGATTCAAATATTTGCAAAATATTCAAGTTTCACAAAAACTCAAAATTTGCAAA
AGATTCAAAATTCACAAAAATTC
Found at i:9470623 original size:35 final size:35
Alignment explanation
Indices: 9470477--9470639 Score: 136
Period size: 35 Copynumber: 4.7 Consensus size: 35
9470467 TCAAAATTTG
* * * *
9470477 CAAAGATTCAAAATTCACAAAAGA-TCTAAGATTCG
1 CAAAAATTCAAAATTCGCAAAAGATTC-AAGTTTCA
* * * *
9470512 TAAAGATTCAAATATTTGCAAAATATTCAAGTTTCA
1 CAAAAATTCAAA-ATTCGCAAAAGATTCAAGTTTCA
* * * *
9470548 TAAAAACTCAAAATTTGCAAAAGATTCAAATTTCA
1 CAAAAATTCAAAATTCGCAAAAGATTCAAGTTTCA
** *
9470583 CAAAAATTCAAAATTCGTGAAAGATTCAAGTTTTGA
1 CAAAAATTCAAAATTCGCAAAAGATTCAAG-TTTCA
9470619 -AAAAATTCAAAA-TC-CAAAAGA
1 CAAAAATTCAAAATTCGCAAAAGA
9470640 AAAATTCAAA
Statistics
Matches: 106, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
33 5 0.05
34 2 0.02
35 68 0.64
36 29 0.27
37 2 0.02
ACGTcount: A:0.50, C:0.13, G:0.09, T:0.28
Consensus pattern (35 bp):
CAAAAATTCAAAATTCGCAAAAGATTCAAGTTTCA
Found at i:9470687 original size:17 final size:17
Alignment explanation
Indices: 9470665--9470704 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
9470655 CAGTGGTAAA
*
9470665 AAATTTGCAA-AGTTTCC
1 AAATTTGCAAGAGATT-C
9470682 AAATTTGCAAGAGATTC
1 AAATTTGCAAGAGATTC
9470699 AAATTT
1 AAATTT
9470705 TTTAAAAGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 17 0.81
18 4 0.19
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.35
Consensus pattern (17 bp):
AAATTTGCAAGAGATTC
Found at i:9471025 original size:54 final size:54
Alignment explanation
Indices: 9470812--9471043 Score: 229
Period size: 54 Copynumber: 4.3 Consensus size: 54
9470802 CAATATGCGA
* * * **
9470812 AAAGATTCCAAGATTC-GAAAAGGTTCCAA-AGTTCATAAAGGTTCCAAGATTTGT
1 AAAGATTTCAAGATTCAG-AAAGATTCCAAGA-TTCATAAAGGTTTCAAGATTCCT
* * *
9470866 AAAGATTTCAAGGTTCAGAATGATTCCAAGATTCATAAAGGTTTCAAGATTTGC-
1 AAAGATTTCAAGATTCAGAAAGATTCCAAGATTCATAAAGGTTTCAAGA-TTCCT
* * *
9470920 AAAG-TTTCCAAGATTCAGAAAGGTTCCAAGATTCGTAAAGGTTGCAAGATTCCT
1 AAAGATTT-CAAGATTCAGAAAGATTCCAAGATTCATAAAGGTTTCAAGATTCCT
* * * * * *
9470974 AAAGGTTTTAAGATTCACAAAGATTCTAAGATTTATAAAGGTTTCAAGATTCAT
1 AAAGATTTCAAGATTCAGAAAGATTCCAAGATTCATAAAGGTTTCAAGATTCCT
* *
9471028 AAAAATTTTAAGATTC
1 AAAGATTTCAAGATTC
9471044 TTAAAAATAT
Statistics
Matches: 149, Mismatches: 23, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
53 6 0.04
54 136 0.91
55 7 0.05
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (54 bp):
AAAGATTTCAAGATTCAGAAAGATTCCAAGATTCATAAAGGTTTCAAGATTCCT
Found at i:9471029 original size:18 final size:18
Alignment explanation
Indices: 9470820--9471030 Score: 160
Period size: 18 Copynumber: 11.7 Consensus size: 18
9470810 GAAAAGATTC
*
9470820 CAAGATTCGA-AAAGGTTC
1 CAAGATTC-ATAAAGGTTT
*
9470838 CAA-AGTTCATAAAGGTTC
1 CAAGA-TTCATAAAGGTTT
** *
9470856 CAAGATTTGTAAAGATTT
1 CAAGATTCATAAAGGTTT
* * * * *
9470874 CAAGGTTCAGAATGATTC
1 CAAGATTCATAAAGGTTT
9470892 CAAGATTCATAAAGGTTT
1 CAAGATTCATAAAGGTTT
***
9470910 CAAGATTTGCAAA-GTTT
1 CAAGATTCATAAAGGTTT
* *
9470927 CCAAGATTCAGAAAGGTTC
1 -CAAGATTCATAAAGGTTT
* *
9470946 CAAGATTCGTAAAGGTTG
1 CAAGATTCATAAAGGTTT
*
9470964 CAAGATTCCTAAAGGTTT
1 CAAGATTCATAAAGGTTT
* * *
9470982 TAAGATTCACAAA-GATT
1 CAAGATTCATAAAGGTTT
*
9470999 CTAAGATTTATAAAGGTTT
1 C-AAGATTCATAAAGGTTT
9471018 CAAGATTCATAAA
1 CAAGATTCATAAA
9471031 AATTTTAAGA
Statistics
Matches: 150, Mismatches: 36, Indels: 14
0.75 0.18 0.07
Matches are distributed among these distances:
17 9 0.06
18 133 0.89
19 8 0.05
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.30
Consensus pattern (18 bp):
CAAGATTCATAAAGGTTT
Found at i:9471040 original size:36 final size:36
Alignment explanation
Indices: 9470812--9471048 Score: 208
Period size: 36 Copynumber: 6.6 Consensus size: 36
9470802 CAATATGCGA
*
9470812 AAAGATTCCAAGATTCGA-AAAGGTTCCAA-AGTTCAT
1 AAAGATTCCAAGATTC-ATAAAGGTTTCAAGA-TTCAT
* ** * * *
9470848 AAAGGTTCCAAGATTTGTAAAGATTTCAAGGTTCAG
1 AAAGATTCCAAGATTCATAAAGGTTTCAAGATTCAT
* ***
9470884 AATGATTCCAAGATTCATAAAGGTTTCAAGATTTGC
1 AAAGATTCCAAGATTCATAAAGGTTTCAAGATTCAT
* * * *
9470920 AAAGTTTCCAAGATTCAGAAAGGTTCCAAGATTCGT
1 AAAGATTCCAAGATTCATAAAGGTTTCAAGATTCAT
* * * * *
9470956 AAAGGTTGCAAGATTCCTAAAGGTTTTAAGATTCAC
1 AAAGATTCCAAGATTCATAAAGGTTTCAAGATTCAT
* *
9470992 AAAGATTCTAAGATTTATAAAGGTTTCAAGATTCAT
1 AAAGATTCCAAGATTCATAAAGGTTTCAAGATTCAT
* ** *
9471028 AAAAATTTTAAGATTCTTAAA
1 AAAGATTCCAAGATTCATAAA
9471049 AATATCAAGA
Statistics
Matches: 158, Mismatches: 41, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
36 158 1.00
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (36 bp):
AAAGATTCCAAGATTCATAAAGGTTTCAAGATTCAT
Found at i:9471058 original size:18 final size:18
Alignment explanation
Indices: 9471017--9471061 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
9471007 TATAAAGGTT
*
9471017 TCAAGATTCATAAAAATT
1 TCAAGATTCATAAAAATA
* *
9471035 TTAAGATTCTTAAAAATA
1 TCAAGATTCATAAAAATA
9471053 TCAAGATTC
1 TCAAGATTC
9471062 GCATTCAAGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.47, C:0.11, G:0.07, T:0.36
Consensus pattern (18 bp):
TCAAGATTCATAAAAATA
Found at i:9471917 original size:175 final size:176
Alignment explanation
Indices: 9471600--9471956 Score: 653
Period size: 175 Copynumber: 2.0 Consensus size: 176
9471590 ATTCTAATTC
* *
9471600 ATGACAAATATGATTCAATCATACATTTTCTCAATTCATTCTAGGGATGCAAAATTGGTAAAGAA
1 ATGACAAATATGATTCAATCATACATTTTCTCAATTCACTCTAGGGATACAAAATTGGTAAAGAA
* *
9471665 CAAAAAAAAAATGGGTATCTATTATCGAAAGGAAGTTTGGGTAAGAACAAATCAAAGATGAACAA
66 C-AAAAAAAAATAGGTATCTATTATCGAAAGGAAGTTTGGGTAAGAACAAATCAAAGATAAACAA
*
9471730 AAAGAAATCATTGTGACTGTTTGAATGGGATATCAACATATAGAATA
130 AAACAAATCATTGTGACTGTTTGAATGGGATATCAACATATAGAATA
9471777 ATGACAAATATGATTCAATCATACATTTTCTCAATTCACTCTAGGGATACAAAATTGGTAAAGAA
1 ATGACAAATATGATTCAATCATACATTTTCTCAATTCACTCTAGGGATACAAAATTGGTAAAGAA
9471842 C-AAAAAAAATAGGTATCTATTATCGAAAGGAAGTTTGGGTAAGAACAAATCAAAGATAAACAAA
66 CAAAAAAAAATAGGTATCTATTATCGAAAGGAAGTTTGGGTAAGAACAAATCAAAGATAAACAAA
9471906 AACAAATCATTGTGACTGTTTGAATGGGATATCAACATATAGAATA
131 AACAAATCATTGTGACTGTTTGAATGGGATATCAACATATAGAATA
9471952 ATGAC
1 ATGAC
9471957 TATCAAGATA
Statistics
Matches: 175, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
175 111 0.63
177 64 0.37
ACGTcount: A:0.45, C:0.11, G:0.17, T:0.27
Consensus pattern (176 bp):
ATGACAAATATGATTCAATCATACATTTTCTCAATTCACTCTAGGGATACAAAATTGGTAAAGAA
CAAAAAAAAATAGGTATCTATTATCGAAAGGAAGTTTGGGTAAGAACAAATCAAAGATAAACAAA
AACAAATCATTGTGACTGTTTGAATGGGATATCAACATATAGAATA
Found at i:9472486 original size:15 final size:15
Alignment explanation
Indices: 9472468--9472500 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
9472458 ATCCCATCAA
9472468 TTTTTTTTCTT-TTTC
1 TTTTTTTT-TTATTTC
9472483 TTTTTTTTTTATTTC
1 TTTTTTTTTTATTTC
9472498 TTT
1 TTT
9472501 CTCTATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 2 0.12
15 15 0.88
ACGTcount: A:0.03, C:0.09, G:0.00, T:0.88
Consensus pattern (15 bp):
TTTTTTTTTTATTTC
Found at i:9472497 original size:21 final size:20
Alignment explanation
Indices: 9472468--9472511 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
9472458 ATCCCATCAA
* *
9472468 TTTTTTTTCTTTTTCTTTTT
1 TTTTTTTTCTTTCTCTATTT
9472488 TTTTTATTTCTTTCTCTATTT
1 TTTTT-TTTCTTTCTCTATTT
9472509 TTT
1 TTT
9472512 CTTCATACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (20 bp):
TTTTTTTTCTTTCTCTATTT
Found at i:9476218 original size:15 final size:16
Alignment explanation
Indices: 9476200--9476229 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9476190 GTCTAAATTT
9476200 TCTT-TCTTTTTTTTC
1 TCTTCTCTTTTTTTTC
9476215 TCTTCTCTTTTTTTT
1 TCTTCTCTTTTTTTT
9476230 TTCACATTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (16 bp):
TCTTCTCTTTTTTTTC
Found at i:9476225 original size:14 final size:13
Alignment explanation
Indices: 9476197--9476252 Score: 51
Period size: 14 Copynumber: 4.2 Consensus size: 13
9476187 TTTGTCTAAA
*
9476197 TTTTCTTTCTTTT
1 TTTTCTTTCTCTT
9476210 TTTTCTCTTCTCTT
1 TTTTCT-TTCTCTT
* *
9476224 TTTTTTTTCACATT
1 TTTTCTTTCTC-TT
9476238 TCTTTCTTTC-CTT
1 T-TTTCTTTCTCTT
9476251 TT
1 TT
9476253 CTTCGTAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
12 1 0.03
13 13 0.36
14 15 0.42
15 7 0.19
ACGTcount: A:0.04, C:0.21, G:0.00, T:0.75
Consensus pattern (13 bp):
TTTTCTTTCTCTT
Found at i:9477599 original size:50 final size:51
Alignment explanation
Indices: 9477477--9477600 Score: 142
Period size: 51 Copynumber: 2.5 Consensus size: 51
9477467 TACATGTTTA
* * * * * *
9477477 ATGCATTAGAGTTTGCATTTTCATTAATGGCATTTTGATAATTTTTGTTAC
1 ATGCATCAAAGTTTGCATTTTTACTAATAGCATTTTGATAATCTTTGTTAC
** * *
9477528 ATATATCAAAGTTTACCTTTTTACTAATAGCATTTTGATAA-CTTTGTTAC
1 ATGCATCAAAGTTTGCATTTTTACTAATAGCATTTTGATAATCTTTGTTAC
*
9477578 ATGCATCAAAGTTTGTATTTTTA
1 ATGCATCAAAGTTTGCATTTTTA
9477601 TCAATGGTCT
Statistics
Matches: 58, Mismatches: 15, Indels: 1
0.78 0.20 0.01
Matches are distributed among these distances:
50 26 0.45
51 32 0.55
ACGTcount: A:0.29, C:0.11, G:0.12, T:0.48
Consensus pattern (51 bp):
ATGCATCAAAGTTTGCATTTTTACTAATAGCATTTTGATAATCTTTGTTAC
Found at i:9481168 original size:13 final size:12
Alignment explanation
Indices: 9481140--9481178 Score: 53
Period size: 13 Copynumber: 3.2 Consensus size: 12
9481130 AAGCTTACCT
9481140 TTAAAATTTTATA
1 TTAAAATTTTA-A
9481153 TTAATAATTTTAA
1 TTAA-AATTTTAA
9481166 TTAAAA-TTTAA
1 TTAAAATTTTAA
9481177 TT
1 TT
9481179 TCAAAATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 7 0.28
12 2 0.08
13 9 0.36
14 7 0.28
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (12 bp):
TTAAAATTTTAA
Found at i:9484927 original size:42 final size:42
Alignment explanation
Indices: 9484878--9484963 Score: 163
Period size: 42 Copynumber: 2.0 Consensus size: 42
9484868 TCTACTCGAC
9484878 TTTTTGACATATTGATAAACTAACTCTTTAACAATTCTAAAA
1 TTTTTGACATATTGATAAACTAACTCTTTAACAATTCTAAAA
*
9484920 TTTTTGACATATTGATAAACTAACTCTTTAACAATTCTAGAA
1 TTTTTGACATATTGATAAACTAACTCTTTAACAATTCTAAAA
9484962 TT
1 TT
9484964 ACAAGTATTG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.38, C:0.14, G:0.06, T:0.42
Consensus pattern (42 bp):
TTTTTGACATATTGATAAACTAACTCTTTAACAATTCTAAAA
Found at i:9485034 original size:17 final size:18
Alignment explanation
Indices: 9485005--9485044 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
9484995 TAAACTTGGT
9485005 AATT-TTAATAATA-TTA
1 AATTCTTAATAATACTTA
9485021 GAATTCTTAA-AATACTTA
1 -AATTCTTAATAATACTTA
9485039 AATTCT
1 AATTCT
9485045 AAGTAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.45
Consensus pattern (18 bp):
AATTCTTAATAATACTTA
Found at i:9489990 original size:101 final size:99
Alignment explanation
Indices: 9489642--9490034 Score: 431
Period size: 101 Copynumber: 3.9 Consensus size: 99
9489632 TGAATAATCT
* * * * **
9489642 AATCATTTGGTAGGA-TTAAAAATCTATTTTT-TTT-AAGATTCATTATGAAATTCCCCAATCAT
1 AATCATTTGGTAAGATTTAAAAA--TATTTTTCTTTCAAAATTTATTATGAAATTCTCCAATTGT
* *
9489704 TTGGTAGAATTCATAATTTTTTTTTTAAAGAATAGAATCCTCC
64 TTGATAGAATTCATAA------TTTTAAAAAATAGAATCCT-C
* * *
9489747 AATTATTTGGTAAGATTTAAAAATAGTTTTCTTTCAAAATTTATTATGAAATTCTTCAATCAT-T
1 AATCATTTGGTAAGATTTAAAAATATTTTTCTTTCAAAATTTATTATGAAATTCTCCAAT--TGT
* ***
9489811 TTGGTAGAATTCATAATAACAAAAAA-AGAATCCTTC
64 TTGATAGAATTCATAATTTTAAAAAATAGAATCC-TC
*
9489847 AATCATTTTGT-AGAGTTT-AAAATATTTTTCTTTCAAAAATTTATTATGAAATTCTCCAATTGT
1 AATCATTTGGTAAGA-TTTAAAAATATTTTTCTTTC-AAAATTTATTATGAAATTCTCCAATTGT
9489910 TTGATAGAATTCATAATTTTTAAAAAATAGAATCCTC
64 TTGATAGAATTCATAA-TTTTAAAAAATAGAATCCTC
*
9489947 AACCATTTGGTAAGATTTAAAAATATTTTTCTTTCAAAAATTTATTATGAAATTCTCCAATTGTT
1 AATCATTTGGTAAGATTTAAAAATATTTTTCTTTC-AAAATTTATTATGAAATTCTCCAATTGTT
*
9490012 TGATAAAATTCATAATTTTAAAA
65 TGATAGAATTCATAATTTTAAAA
9490035 TTTTTAAACC
Statistics
Matches: 252, Mismatches: 23, Indels: 31
0.82 0.08 0.10
Matches are distributed among these distances:
98 1 0.00
99 34 0.13
100 73 0.29
101 77 0.31
104 6 0.02
105 16 0.06
106 28 0.11
107 17 0.07
ACGTcount: A:0.38, C:0.10, G:0.09, T:0.42
Consensus pattern (99 bp):
AATCATTTGGTAAGATTTAAAAATATTTTTCTTTCAAAATTTATTATGAAATTCTCCAATTGTTT
GATAGAATTCATAATTTTAAAAAATAGAATCCTC
Found at i:9493947 original size:25 final size:25
Alignment explanation
Indices: 9493919--9493966 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
9493909 ATTAACATCT
9493919 TTTTTATTAATT-TTATTAATTATTA
1 TTTTTA-TAATTATTATTAATTATTA
*
9493944 TTTTTATAATTATTTTTAATTAT
1 TTTTTATAATTATTATTAATTAT
9493967 GATATCAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (25 bp):
TTTTTATAATTATTATTAATTATTA
Found at i:9499893 original size:27 final size:27
Alignment explanation
Indices: 9499830--9499895 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
9499820 AAATTCCAAT
* *
9499830 CCAAATTCTCAACTAGCCCCTTTAAAA
1 CCAAATTCTCAACCAGCCCCTTCAAAA
* * *
9499857 CTAAAATCTCAACCATCCCCTTCAAAA
1 CCAAATTCTCAACCAGCCCCTTCAAAA
*
9499884 CCAGATTCTCAA
1 CCAAATTCTCAA
9499896 TCTACCCAAC
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.38, C:0.35, G:0.03, T:0.24
Consensus pattern (27 bp):
CCAAATTCTCAACCAGCCCCTTCAAAA
Found at i:9501810 original size:25 final size:24
Alignment explanation
Indices: 9501775--9501834 Score: 86
Period size: 25 Copynumber: 2.5 Consensus size: 24
9501765 GTGTAGAAAT
9501775 TTGATTCTCCTACATTAATGCAGA
1 TTGATTCTCCTACATTAATGCAGA
* *
9501799 TCTGATTCTCCTACATTAGTGCAGC
1 T-TGATTCTCCTACATTAATGCAGA
9501824 TTGATT-TCCTA
1 TTGATTCTCCTA
9501835 ATTTATTTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
23 5 0.15
24 6 0.18
25 22 0.67
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.40
Consensus pattern (24 bp):
TTGATTCTCCTACATTAATGCAGA
Found at i:9504238 original size:18 final size:18
Alignment explanation
Indices: 9504215--9504252 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
9504205 ATTTAGGATG
9504215 CATTTGGATGAGGGA-TTT
1 CATTTGGA-GAGGGACTTT
*
9504233 CATTTGTAGAGGGACTTT
1 CATTTGGAGAGGGACTTT
9504251 CA
1 CA
9504253 AATTTCTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.24, C:0.11, G:0.29, T:0.37
Consensus pattern (18 bp):
CATTTGGAGAGGGACTTT
Found at i:9504603 original size:16 final size:17
Alignment explanation
Indices: 9504582--9504615 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
9504572 TCCTTTTCTA
*
9504582 TCTCTA-AATCATTATT
1 TCTCTATAATAATTATT
9504598 TCTCTATAATAATTATT
1 TCTCTATAATAATTATT
9504615 T
1 T
9504616 TTTATCTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.32, C:0.15, G:0.00, T:0.53
Consensus pattern (17 bp):
TCTCTATAATAATTATT
Found at i:9511942 original size:97 final size:95
Alignment explanation
Indices: 9511709--9512045 Score: 273
Period size: 96 Copynumber: 3.5 Consensus size: 95
9511699 TAAAAATATA
* * * *
9511709 AAATTTATTTATTTTAAACTATAAAATTTGATCAAATATATTAATGTTATATTATATTTAAATAT
1 AAATTTATTTATTTTAAACTATAAAATTTGATAAAATATATTAA--ATATATTA-ATCTAAAAAT
* *
9511774 AATTT--AAAAAACCATTTAAAAATAAAATTTTG
63 -TTTTAAAAAAAACCATTTAAAAAGAAAATTTTG
* * * * *
9511806 AAATTTATCTATTCT-AATTATAAAACTAGATAAAATATA-TAAATATATTAATCTAAAAATTTT
1 AAATTTATTTATTTTAAACTATAAAATTTGATAAAATATATTAAATATATTAATCTAAAAATTTT
* *
9511869 TAAAAAAAAGCTTCTTAAAATTAGAAAATTTT-
66 TAAAAAAAACCAT-TTAAAA--AGAAAATTTTG
* * *
9511901 AGAATTTATTTATTTTAAACTATAAATTTTGATAAAATATATTAAACTATAGT-ATGTATAAAA-
1 A-AATTTATTTATTTTAAACTATAAAATTTGATAAAATATATTAAA-TATATTAATCTA-AAAAT
* * *
9511964 TTTT--AAAAAGCTTATTCAAAAAG-AAATGTTTG
63 TTTTAAAAAAAAC-CATTTAAAAAGAAAAT-TTTG
* * * *
9511996 AAATTTGTTTATTTTGAATTATAATATTTGATAAAA-ATATTATAATATAT
1 AAATTTATTTATTTTAAACTATAAAATTTGATAAAATATATTA-AATATAT
9512046 ATTATAATTT
Statistics
Matches: 194, Mismatches: 32, Indels: 32
0.75 0.12 0.12
Matches are distributed among these distances:
91 3 0.02
92 8 0.04
93 29 0.15
94 43 0.22
95 5 0.03
96 51 0.26
97 34 0.18
98 12 0.06
99 9 0.05
ACGTcount: A:0.48, C:0.04, G:0.05, T:0.43
Consensus pattern (95 bp):
AAATTTATTTATTTTAAACTATAAAATTTGATAAAATATATTAAATATATTAATCTAAAAATTTT
TAAAAAAAACCATTTAAAAAGAAAATTTTG
Found at i:9512068 original size:193 final size:187
Alignment explanation
Indices: 9511609--9512090 Score: 405
Period size: 193 Copynumber: 2.5 Consensus size: 187
9511599 TCTAATTTTT
* * * * *
9511609 TAAAA-TTTAAAATTTATTTATTTTAAATTATAAAACTAGATAAAAATATAAAAATAAATTATAT
1 TAAAATTTTGAAATTTATCTATTCT-AATTATAAAACTAGAT-AAAATATATAAATATATTA-AT
* * * * * *
9511673 TTAGAAATTAAAAAA---C---AAAAACTTATTAAAAATATAAAATTTATTTATTTTAAACTATA
63 CTAAAAATTAAAAAACTTCTTGAAAAA--TA-GAAAATTTTAGAATTTATTTATTTTAAACTATA
* ** * * *
9511732 AAATTTGATCAAATATATTAATGTTATATTATATTTAAATATAATTTAAAAAACCATTTAAAAA
125 AAATTTGATAAAATATATTAATACTATAGTATATATAAATAT-ATTTAAAAAACCATTCAAAAA
9511796 TAAAATTTTGAAATTTATCTATTCTAATTATAAAACTAGATAAAATATATAAATATATTAATCTA
1 TAAAATTTTGAAATTTATCTATTCTAATTATAAAACTAGATAAAATATATAAATATATTAATCTA
*
9511861 AAAATTTTTAAAAAAAAGCTTCTT-AAAATTAGAAAATTTTAGAATTTATTTATTTTAAACTATA
66 AAAA---TT--AAAAAA-CTTCTTGAAAAATAGAAAATTTTAGAATTTATTTATTTTAAACTATA
* * * *
9511925 AATTTTGATAAAATATATTAA-ACTATAGTATGTATAAA-AT-TTTAAAAAGCTTATTCAAAAA
125 AAATTTGATAAAATATATTAATACTATAGTATATATAAATATATTTAAAAAAC-CATTCAAAAA
* * * * * * *
9511986 -GAAATGTTTGAAATTTGTTTATTTTGAATTATAATATTTGATAAAAATATTATAATATATATTA
1 TAAAAT-TTTGAAATTTATCTATTCT-AATTATAAAACTAGAT-AAAATA-TATAA-ATATA-T-
*
9512050 TAATTTGAAAAA-TAAAAAACTTCTTGAAAAATAGAAAATTT
59 TAATCT-AAAAATTAAAAAACTTCTTGAAAAATAGAAAATTT
9512091 AAAACTCATT
Statistics
Matches: 242, Mismatches: 31, Indels: 40
0.77 0.10 0.13
Matches are distributed among these distances:
185 7 0.03
186 17 0.07
187 21 0.09
188 18 0.07
189 13 0.05
190 36 0.15
191 35 0.14
192 18 0.07
193 54 0.22
194 8 0.03
195 1 0.00
196 9 0.04
197 5 0.02
ACGTcount: A:0.51, C:0.04, G:0.05, T:0.40
Consensus pattern (187 bp):
TAAAATTTTGAAATTTATCTATTCTAATTATAAAACTAGATAAAATATATAAATATATTAATCTA
AAAATTAAAAAACTTCTTGAAAAATAGAAAATTTTAGAATTTATTTATTTTAAACTATAAAATTT
GATAAAATATATTAATACTATAGTATATATAAATATATTTAAAAAACCATTCAAAAA
Found at i:9512824 original size:4 final size:4
Alignment explanation
Indices: 9512808--9512856 Score: 80
Period size: 4 Copynumber: 12.2 Consensus size: 4
9512798 TAAAAATTTA
* *
9512808 ACAT ACAT GCAT ACAT ACAT ACAT ACAT ACAT GCAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
9512856 A
1 A
9512857 GTATTCTAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.47, C:0.24, G:0.04, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:9513962 original size:10 final size:10
Alignment explanation
Indices: 9513947--9513997 Score: 50
Period size: 10 Copynumber: 4.9 Consensus size: 10
9513937 AAGCTTTCCA
9513947 TTACATTTAT
1 TTACATTTAT
9513957 TTACATGTTCAT
1 TTACAT-TT-AT
*
9513969 TCA-ATTTAT
1 TTACATTTAT
*
9513978 TTACATTTTT
1 TTACATTTAT
9513988 TTAGCATTTA
1 TTA-CATTTA
9513998 CTTCAATTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
9 4 0.12
10 16 0.48
11 9 0.27
12 4 0.12
ACGTcount: A:0.27, C:0.12, G:0.04, T:0.57
Consensus pattern (10 bp):
TTACATTTAT
Found at i:9513985 original size:31 final size:31
Alignment explanation
Indices: 9513947--9514007 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
9513937 AAGCTTTCCA
9513947 TTACATTTATTTA-CATGTT-CATTCAATTTAT
1 TTACATTTATTTAGCAT-TTAC-TTCAATTTAT
*
9513978 TTACATTTTTTTAGCATTTACTTCAATTTA
1 TTACATTTATTTAGCATTTACTTCAATTTA
9514008 AGTTGTAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
31 23 0.85
32 4 0.15
ACGTcount: A:0.28, C:0.13, G:0.03, T:0.56
Consensus pattern (31 bp):
TTACATTTATTTAGCATTTACTTCAATTTAT
Found at i:9516039 original size:15 final size:15
Alignment explanation
Indices: 9516002--9516044 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
9515992 AGTGGAGAAT
*
9516002 ATTTTTAAATTTTTG
1 ATTTTTAAATTTTAG
*
9516017 ATAATTTAAATTTTAG
1 AT-TTTTAAATTTTAG
9516033 ATTTTTAAATTT
1 ATTTTTAAATTT
9516045 AAGGGTAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (15 bp):
ATTTTTAAATTTTAG
Found at i:9518780 original size:3 final size:3
Alignment explanation
Indices: 9518772--9518806 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
9518762 TTAATTTGGA
9518772 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
9518807 ATTTTTCATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:9519044 original size:25 final size:25
Alignment explanation
Indices: 9519015--9519063 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
9519005 AATTCTTAAA
9519015 GATAAATATTGAATTTTTATATGAT
1 GATAAATATTGAATTTTTATATGAT
*
9519040 GATAAATGTTGAATTTTTATATGA
1 GATAAATATTGAATTTTTATATGA
9519064 AAATACAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.14, T:0.47
Consensus pattern (25 bp):
GATAAATATTGAATTTTTATATGAT
Found at i:9519864 original size:21 final size:20
Alignment explanation
Indices: 9519838--9519887 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
9519828 CTTGGTAAAA
*
9519838 TTTTTTTGGTTATTTCTTTAT
1 TTTTTTTAGTTATTT-TTTAT
*
9519859 TTTTTTATATTTATTTTTTAT
1 TTTTTT-TAGTTATTTTTTAT
9519880 TTGTTTTT
1 TT-TTTTT
9519888 TATTTATTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 14 0.56
22 11 0.44
ACGTcount: A:0.12, C:0.02, G:0.06, T:0.80
Consensus pattern (20 bp):
TTTTTTTAGTTATTTTTTAT
Found at i:9519872 original size:22 final size:22
Alignment explanation
Indices: 9519847--9519896 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
9519837 ATTTTTTTGG
9519847 TTATTTCTTTATTT-TTTTATAT
1 TTATTT-TTTATTTGTTTTATAT
*
9519869 TTATTTTTTATTTGTTTTTTAT
1 TTATTTTTTATTTGTTTTATAT
9519891 TTATTT
1 TTATTT
9519897 GATTATTCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 7 0.27
22 19 0.73
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (22 bp):
TTATTTTTTATTTGTTTTATAT
Found at i:9519880 original size:11 final size:11
Alignment explanation
Indices: 9519847--9519896 Score: 66
Period size: 11 Copynumber: 4.5 Consensus size: 11
9519837 ATTTTTTTGG
9519847 TTATTTCTTTAT
1 TTATTT-TTTAT
*
9519859 TT-TTTTATAT
1 TTATTTTTTAT
9519869 TTATTTTTTAT
1 TTATTTTTTAT
*
9519880 TTGTTTTTTAT
1 TTATTTTTTAT
9519891 TTATTT
1 TTATTT
9519897 GATTATTCAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
10 6 0.18
11 25 0.76
12 2 0.06
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (11 bp):
TTATTTTTTAT
Found at i:9525344 original size:9 final size:9
Alignment explanation
Indices: 9525316--9525357 Score: 57
Period size: 9 Copynumber: 4.4 Consensus size: 9
9525306 CATACAAGAA
*
9525316 AAAAAAAAG
1 AAAAAAATG
9525325 TAAAGAAAATG
1 -AAA-AAAATG
9525336 AAAAAAATG
1 AAAAAAATG
9525345 AAAAAAATG
1 AAAAAAATG
9525354 AAAA
1 AAAA
9525358 GGCATGTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
9 19 0.63
10 6 0.20
11 5 0.17
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.10
Consensus pattern (9 bp):
AAAAAAATG
Found at i:9526710 original size:23 final size:26
Alignment explanation
Indices: 9526667--9526713 Score: 73
Period size: 23 Copynumber: 1.9 Consensus size: 26
9526657 TTGAAAACCT
9526667 GTAATATCATTTTCTAAAACCTCTGA
1 GTAATATCATTTTCTAAAACCTCTGA
9526693 GTAAT-TC-TTTT-TAAAACCTCT
1 GTAATATCATTTTCTAAAACCTCT
9526714 AGGTATATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 10 0.48
24 4 0.19
25 2 0.10
26 5 0.24
ACGTcount: A:0.32, C:0.19, G:0.06, T:0.43
Consensus pattern (26 bp):
GTAATATCATTTTCTAAAACCTCTGA
Found at i:9526724 original size:23 final size:24
Alignment explanation
Indices: 9526670--9526725 Score: 64
Period size: 23 Copynumber: 2.3 Consensus size: 24
9526660 AAAACCTGTA
9526670 ATATCATTTTCTAAAACCTCTGAGT
1 ATATC-TTTTCTAAAACCTCTGAGT
9526695 A-ATTCTTTT-TAAAACCTCT-AGGT
1 ATA-TCTTTTCTAAAACCTCTGA-GT
9526718 ATATCTTT
1 ATATCTTT
9526726 AAAACTTTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
22 1 0.04
23 18 0.64
24 6 0.21
25 3 0.11
ACGTcount: A:0.30, C:0.18, G:0.07, T:0.45
Consensus pattern (24 bp):
ATATCTTTTCTAAAACCTCTGAGT
Found at i:9527500 original size:10 final size:10
Alignment explanation
Indices: 9527474--9527538 Score: 57
Period size: 10 Copynumber: 6.6 Consensus size: 10
9527464 ATTTGTTGAA
*
9527474 TTTATGTTATT
1 TTTAT-TTATC
9527485 TTTATTT-TC
1 TTTATTTATC
9527494 ATTTATTTATC
1 -TTTATTTATC
9527505 TTTATTTAT-
1 TTTATTTATC
*
9527514 TAT-TTTAT-
1 TTTATTTATC
9527522 TTATATTTATC
1 TT-TATTTATC
9527533 TTTATT
1 TTTATT
9527539 AATTTTTTAC
Statistics
Matches: 46, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
8 6 0.13
9 4 0.09
10 27 0.59
11 9 0.20
ACGTcount: A:0.22, C:0.05, G:0.02, T:0.72
Consensus pattern (10 bp):
TTTATTTATC
Found at i:9527536 original size:28 final size:26
Alignment explanation
Indices: 9527480--9527547 Score: 86
Period size: 28 Copynumber: 2.6 Consensus size: 26
9527470 TGAATTTATG
9527480 TTATTT-TTATTTTCATTTATTTATCT
1 TTATTTATTATTTT-ATTTATTTATCT
9527506 TTATTTATTATTTTATTTATATTTATCT
1 TTATTTATTATTTTA-TT-TATTTATCT
*
9527534 TTATTAATT-TTTTA
1 TTATTTATTATTTTA
9527548 CTTTTTTGGA
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
26 7 0.18
27 14 0.37
28 17 0.45
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (26 bp):
TTATTTATTATTTTATTTATTTATCT
Found at i:9528526 original size:8 final size:8
Alignment explanation
Indices: 9528524--9528564 Score: 64
Period size: 8 Copynumber: 5.1 Consensus size: 8
9528514 TATTTTTTTA
9528524 TTTATTTG
1 TTTATTTG
9528532 TTTATTTG
1 TTTATTTG
*
9528540 TTTATTTA
1 TTTATTTG
*
9528548 TATATTTG
1 TTTATTTG
9528556 TTTATTTG
1 TTTATTTG
9528564 T
1 T
9528565 GAGTATTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.17, C:0.00, G:0.10, T:0.73
Consensus pattern (8 bp):
TTTATTTG
Found at i:9528528 original size:12 final size:12
Alignment explanation
Indices: 9528513--9528562 Score: 64
Period size: 12 Copynumber: 4.2 Consensus size: 12
9528503 TTTTTTTTGG
*
9528513 TTATTTTTTTAT
1 TTATTTGTTTAT
9528525 TTATTTGTTTAT
1 TTATTTGTTTAT
* *
9528537 TTGTTTATTTAT
1 TTATTTGTTTAT
*
9528549 ATATTTGTTTAT
1 TTATTTGTTTAT
9528561 TT
1 TT
9528563 GTGAGTATTT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.18, C:0.00, G:0.06, T:0.76
Consensus pattern (12 bp):
TTATTTGTTTAT
Found at i:9528536 original size:20 final size:20
Alignment explanation
Indices: 9528508--9528548 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
9528498 TAAATTTTTT
*
9528508 TTTGGTTATTTTTTTATTTA
1 TTTGGTTATTTGTTTATTTA
*
9528528 TTTGTTTATTTGTTTATTTA
1 TTTGGTTATTTGTTTATTTA
9528548 T
1 T
9528549 ATATTTGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.10, T:0.76
Consensus pattern (20 bp):
TTTGGTTATTTGTTTATTTA
Found at i:9530917 original size:23 final size:23
Alignment explanation
Indices: 9530868--9530911 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
9530858 CTTAAATTTC
*
9530868 AAAAGAAAGAAAATGAGAAAAAG
1 AAAAGAAACAAAATGAGAAAAAG
9530891 AAAAGAAACAAAA-GAAGAAAA
1 AAAAGAAACAAAATG-AGAAAA
9530912 CAAAAATGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 1 0.05
23 18 0.95
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.02
Consensus pattern (23 bp):
AAAAGAAACAAAATGAGAAAAAG
Found at i:9536811 original size:17 final size:17
Alignment explanation
Indices: 9536791--9536825 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
9536781 TTGGGGCTTA
9536791 ATTTATGATTTAT-TTAT
1 ATTTAT-ATTTATATTAT
9536808 ATTTATATTTATATTAT
1 ATTTATATTTATATTAT
9536825 A
1 A
9536826 AGTGGATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (17 bp):
ATTTATATTTATATTAT
Found at i:9538447 original size:127 final size:128
Alignment explanation
Indices: 9538190--9538432 Score: 289
Period size: 127 Copynumber: 1.9 Consensus size: 128
9538180 TTTTCGACAG
** * ** *
9538190 AAAATCACCTTTAATAATCCATAGGAAAAATATGGAATGAATTCTTGAAAGTGTTTTTGGCCAAA
1 AAAATCACCTTTAATAATCCATACAAAAAATATGGAACGAATTCTTGAAAGCATTTGTGGCCAAA
* *
9538255 AATGCCTTTAATAATCTAATCAATAAATTTTTAATTATGATTATTAAAGGTAATTTTTATAAA
66 AATGCCTTTAATAATCTAATCAATAAAATTTTAATGATGATTATTAAAGGTAATTTTTATAAA
* * *
9538318 AAAAT-ACCTTTAATAATCCATACAAAAAAGT-TGGAACGGATTCTTGAAGGCATTTGTGGCCCA
1 AAAATCACCTTTAATAATCCATACAAAAAA-TATGGAACGAATTCTTGAAAGCATTTGTGGCCAA
* * *
9538381 AAATGCCTTTAAT-ATTTCACA-CAATAAAATTTTAGGTGA-GATTATTGAAGGT
65 AAATGCCTTTAATAATCT-A-ATCAATAAAATTTTA-ATGATGATTATTAAAGGT
9538433 GGTTTTTGTC
Statistics
Matches: 97, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
126 3 0.03
127 85 0.88
128 9 0.09
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.35
Consensus pattern (128 bp):
AAAATCACCTTTAATAATCCATACAAAAAATATGGAACGAATTCTTGAAAGCATTTGTGGCCAAA
AATGCCTTTAATAATCTAATCAATAAAATTTTAATGATGATTATTAAAGGTAATTTTTATAAA
Found at i:9538651 original size:126 final size:124
Alignment explanation
Indices: 9538470--9538764 Score: 291
Period size: 126 Copynumber: 2.3 Consensus size: 124
9538460 CATTTTGTTA
* ** *
9538470 GGGATTATTCAAGGC-ATTTTCTTACTAAAAATGCCCTT-AATAATTCATAAGAAAAATATAG-A
1 GGGATTATTGAAGGCGATTTTGGTA--AAAAATG-CCTTCAATAATCCATAAGAAAAA-ATAGAA
* * *
9538532 ATGGATTTTTGAAGGCGTT-TTTGGC-CAAAGGCGCTTTCAATAATC-CAATCAATAAATTTTTA
62 ACGGATTTTTGAAAGC-TTGTTTGGCTAAAAGGC-CTTT-AATAATCACAA--AATAAATTTTTA
*
9538594 GTT
122 GGT
* * * *
9538597 GGGATTATTGATGGC-AGTTTTTGTCAAAAATGCCTTCAATAATCCATACA-AAAAAATTGAAAC
1 GGGATTATTGAAGGCGA-TTTTGGTAAAAAATGCCTTCAATAATCCATA-AGAAAAAATAGAAAC
* *
9538660 GGATTTTTGAAAGCTTGTTTGGCTTAAAATGCCTTTAATATTCTACAAAATAAATTTTTAGGT
64 GGATTTTTGAAAGCTTGTTTGGC-TAAAAGGCCTTTAATAATC-ACAAAATAAATTTTTAGGT
9538723 GGGATTATTGAAGGCGATTTTGGTAAAAAATGCCTTCAATAA
1 GGGATTATTGAAGGCGATTTTGGTAAAAAATGCCTTCAATAA
9538765 CATTTTGTTG
Statistics
Matches: 142, Mismatches: 16, Indels: 21
0.79 0.09 0.12
Matches are distributed among these distances:
125 9 0.06
126 100 0.70
127 20 0.14
128 13 0.09
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.35
Consensus pattern (124 bp):
GGGATTATTGAAGGCGATTTTGGTAAAAAATGCCTTCAATAATCCATAAGAAAAAATAGAAACGG
ATTTTTGAAAGCTTGTTTGGCTAAAAGGCCTTTAATAATCACAAAATAAATTTTTAGGT
Found at i:9538754 original size:305 final size:305
Alignment explanation
Indices: 9538200--9538831 Score: 792
Period size: 305 Copynumber: 2.1 Consensus size: 305
9538190 AAAATCACCT
* * * *
9538200 TTAATAATCCATAGGAAAAATATGGAATGAATTCTTGAAAGTGTTTTTGGCCAAAAATGCCTTTA
1 TTAATAATCCATAAGAAAAATATAGAATGAATTCTTGAAAGCGTTTTTGGCC-AAAAGGCCTTTA
* * * *
9538265 ATAATCTAATCAATAAATTTTTAATTATGATTATTAAAGGTAATTTTTATAAAAAAATACCTTTA
65 ATAATCCAATCAATAAATTTTTAATTAGGATTATTAAAGGCAATTTTTATAAAAAAATACCTTCA
* * *
9538330 ATAATCCATACAAAAAAGTTGGAACGGATTCTTGAAGGCATTTGTGGCCCAAAATGCCTTTAATA
130 ATAATCCATACAAAAAAATTGAAACGGATTCTTGAAAGCATTTGTGGCCCAAAATGCCTTTAATA
* * * * *
9538395 TTTCACACAATAAAATTTTAGGTGAGATTATTGAAGGTGGTTTTTGTCAAAAATGCCTTCAATAA
195 TTTCACAAAATAAAATTTTAGGTGAGATTATTGAAGGCGATTTTGGTAAAAAATGCCTTCAATAA
* *
9538460 CATTTTGTTAGG-GATTATTCAAGGCATTTTCTTACTAAAAATGCCC
260 CATTTTGTT-GGAGATTATTCAAAGCATTTTCTTAATAAAAATGCCC
* * * *
9538506 TTAATAATTCATAAGAAAAATATAGAATGGATTTTTGAAGGCGTTTTTGGCC-AAAGGCGCTTTC
1 TTAATAATCCATAAGAAAAATATAGAATGAATTCTTGAAAGCGTTTTTGGCCAAAAGGC-CTTT-
* * * * * * * *
9538570 AATAATCCAATCAATAAATTTTTAGTTGGGATTATTGATGGCAGTTTTTGT-CAAAAATGCCTTC
64 AATAATCCAATCAATAAATTTTTAATTAGGATTATTAAAGGCAATTTTTATAAAAAAATACCTTC
* * **
9538634 AATAATCCATACAAAAAAATTGAAACGGATTTTTGAAAGC-TTGTTTGGCTTAAAATGCCTTTAA
129 AATAATCCATACAAAAAAATTGAAACGGATTCTTGAAAGCATT-TGTGGCCCAAAATGCCTTTAA
* *
9538698 TA-TTCTACAAAATAAATTTTTAGGTGGGATTATTGAAGGCGATTTTGGTAAAAAATGCCTTCAA
193 TATTTC-ACAAAATAAAATTTTAGGTGAGATTATTGAAGGCGATTTTGGTAAAAAATGCCTTCAA
* *
9538762 TAACATTTTGTTGGAGATTATTCAAAGCGTTTTCTTAATAAAAAT-ACC
257 TAACATTTTGTTGGAGATTATTCAAAGCATTTTCTTAATAAAAATGCCC
*
9538810 TTCATTAATCCCATAA-AAAAAT
1 TT-AATAAT-CCATAAGAAAAAT
9538832 TTTTTTTGGT
Statistics
Matches: 279, Mismatches: 40, Indels: 15
0.84 0.12 0.04
Matches are distributed among these distances:
304 16 0.06
305 171 0.61
306 92 0.33
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (305 bp):
TTAATAATCCATAAGAAAAATATAGAATGAATTCTTGAAAGCGTTTTTGGCCAAAAGGCCTTTAA
TAATCCAATCAATAAATTTTTAATTAGGATTATTAAAGGCAATTTTTATAAAAAAATACCTTCAA
TAATCCATACAAAAAAATTGAAACGGATTCTTGAAAGCATTTGTGGCCCAAAATGCCTTTAATAT
TTCACAAAATAAAATTTTAGGTGAGATTATTGAAGGCGATTTTGGTAAAAAATGCCTTCAATAAC
ATTTTGTTGGAGATTATTCAAAGCATTTTCTTAATAAAAATGCCC
Found at i:9538902 original size:35 final size:35
Alignment explanation
Indices: 9538847--9538918 Score: 90
Period size: 35 Copynumber: 2.1 Consensus size: 35
9538837 TTGGTATATG
* * *
9538847 TGAAGTTAGTTATAGGTTTATACCCATAAAACATT
1 TGAAGTCAGTTATAGATTTATACCCAGAAAACATT
* **
9538882 TGAAGTCAGTTGTAGATTTATGTCCAGAAAACATT
1 TGAAGTCAGTTATAGATTTATACCCAGAAAACATT
9538917 TG
1 TG
9538919 GTTTATATAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.36
Consensus pattern (35 bp):
TGAAGTCAGTTATAGATTTATACCCAGAAAACATT
Found at i:9543517 original size:238 final size:236
Alignment explanation
Indices: 9542975--9543584 Score: 782
Period size: 238 Copynumber: 2.6 Consensus size: 236
9542965 TTTTTCAAAG
* * * * *
9542975 AAAATTATTGAAGGCATATAATGCAAAAAATACCTTCAATATATTCATTCAAAAATCAGAATAAA
1 AAAATTATTGAAGGCTTATAATGCAAAAAATACCTTCAATAAATTCCTTCAAAAATTAGAATGAA
* *
9543040 TTAGCT-AAGGCATTTTTCTGGAATAAACGCCTTCACTGACTATCTTAAAATTTTAGTAGTAGAA
66 TTAG-TGAAGGCATTTTTCTGGAATAAACGCCTTCACTAACT-TCTTAAAATTTTAGTAGTGGAA
* ** *
9543104 TATTAAATGTATTTTTCACTAAACAACACTTTTAATAATCTCAAACAATTTTAAAAAAAATTATT
129 TATTGAATACATTTTTCACTAAACAACACATTTAATAATCTCAAACAATTTTAAAAAAAATTATT
* *
9543169 AAAGGCGTTTGTTCTAAAAAAATACCTTTAATAATTATCTACA
194 AAAGGCATTTGTTCTAAAAAAATACCTTCAATAATTATCTACA
* *
9543212 AAAGTTATTGAATG-TGTATAATGCAAAAAATACCTTCAATAAATT-CTTCAAAAATTAGAATGA
1 AAAATTATTGAAGGCT-TATAATGCAAAAAATACCTTCAATAAATTCCTTCAAAAATTAGAATGA
* * * *
9543275 ATTAGTGAAGGCGTTTTTATGGAATAAACGCATTCACTAACTGTTTTAAAATTTTAGTAGTGGAA
65 ATTAGTGAAGGCATTTTTCTGGAATAAACGCCTTCACTAACT-TCTTAAAATTTTAGTAGTGGAA
*
9543340 TATTGAATACA-TTTTCTACTAAA-AGACGCATTTAATAATCTCAAACAATTTTTAAAAGAAAAT
129 TATTGAATACATTTTTC-ACTAAACA-ACACATTTAATAATCTCAAACAA-TTTTAAAA-AAAAT
* * * * * * * *
9543403 TATTGAATGTATTTTTTGTCAAGAAATGCCTTCAATAATTATCTACA
190 TATTAAAGGCATTTGTTCTAAAAAAATACCTTCAATAATTATCTACA
* *
9543450 AAAATTATTGAAGGCTTATAATG-AAAAAATACCTTCAATAAATTCCTTCAAAAATTAAAACGAA
1 AAAATTATTGAAGGCTTATAATGCAAAAAATACCTTCAATAAATTCCTTCAAAAATTAGAATGAA
* * * * *
9543514 TTAGTGAAGGTATTTTTCTAGAATAAACACCTTCAATAACCTTCTTAAAATTTTAATAGTGGAAT
66 TTAGTGAAGGCATTTTTCTGGAATAAACGCCTTCACTAA-CTTCTTAAAATTTTAGTAGTGGAAT
9543579 ATTGAA
130 ATTGAA
9543585 GATGTATAGT
Statistics
Matches: 322, Mismatches: 42, Indels: 17
0.85 0.11 0.04
Matches are distributed among these distances:
235 7 0.02
236 106 0.33
237 69 0.21
238 137 0.43
239 3 0.01
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.35
Consensus pattern (236 bp):
AAAATTATTGAAGGCTTATAATGCAAAAAATACCTTCAATAAATTCCTTCAAAAATTAGAATGAA
TTAGTGAAGGCATTTTTCTGGAATAAACGCCTTCACTAACTTCTTAAAATTTTAGTAGTGGAATA
TTGAATACATTTTTCACTAAACAACACATTTAATAATCTCAAACAATTTTAAAAAAAATTATTAA
AGGCATTTGTTCTAAAAAAATACCTTCAATAATTATCTACA
Found at i:9543690 original size:123 final size:124
Alignment explanation
Indices: 9543481--9543708 Score: 341
Period size: 123 Copynumber: 1.8 Consensus size: 124
9543471 TGAAAAAATA
* ** *
9543481 CCTTCAATAAATTCCTTCAAAAATTAAAACGAATTAGTGAAGGTATTTTTCTAGAATAAACACCT
1 CCTTCAATAAATTCCTTCAAAAATTAAAACGAACTAGTGAACATATTTTTCTAAAATAAACACCT
* *
9543546 TCAATAACCTTCTTAAAATTTTAATAGTGGAATATTGAAGATGTATAGTGTAACAAACG
66 TCAATAACCGTCTTAAAATTTTAATAGTGAAATATTGAAGATGTATAGTGTAACAAACG
* ** *
9543605 CCTTCAATAAATTCCTTCAAAAATTAGAATTAACTAGTGAACATA-TTTTCTAAAATAAACGCCT
1 CCTTCAATAAATTCCTTCAAAAATTAAAACGAACTAGTGAACATATTTTTCTAAAATAAACACCT
* *
9543669 TGATTAACCGTCTTAAAATTTTAATAGTGAAATATTGAAG
66 TCAATAACCGTCTTAAAATTTTAATAGTGAAATATTGAAG
9543709 GCGTTTTCTA
Statistics
Matches: 92, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
123 53 0.58
124 39 0.42
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (124 bp):
CCTTCAATAAATTCCTTCAAAAATTAAAACGAACTAGTGAACATATTTTTCTAAAATAAACACCT
TCAATAACCGTCTTAAAATTTTAATAGTGAAATATTGAAGATGTATAGTGTAACAAACG
Found at i:9543753 original size:361 final size:359
Alignment explanation
Indices: 9543244--9543940 Score: 979
Period size: 361 Copynumber: 1.9 Consensus size: 359
9543234 GCAAAAAATA
* * **
9543244 CCTTCAATAAATTCTTCAAAAATTAGAATGAATTAGTGAAGGCGTTTTTATGGAATAAACGCATT
1 CCTTCAATAAATTCTTCAAAAATTAGAATGAACTAGTGAA-GCATTTTTATAAAATAAACGCATT
* * * * *
9543309 CACTAACTGTTTTAAAATTTTAGTAGTGGAATATTGAATACATTTTCTACTAAAAGACGCATTTA
65 CACTAACCGTCTTAAAATTTTAATAGTGAAATATTGAAGACATTTTCTACTAAAAGACGCATTTA
* * * * **
9543374 ATAATCTCAAACAA-TTTTTAAAAGAAAATTATTGAATGTATTTTTTGTCAAGAAATGCCTTCAA
130 ATAATCTCAAACAATTTTTTAAAA-AAAATTATTAAAGGCATTTTTTCTCAAGAAACACCTTCAA
* *
9543438 TAATTATCTACAAAAATTATTGAAGGCTTATAATG-AAAAAATACCTTCAATAAATTCCTTCAAA
194 TAATTATCTACAAAAATTATTGAAGACGTATAATGCAAAAAATACCTTCAATAAATTCCTTCAAA
*
9543502 AATTAAAACGAATTAGTGAAGGTATTTTTCTAGAATAAACACCTTCAATAACCTTCTTAAAATTT
259 AATTAAAACGAATTAGTGAAGGTATTTTTCTAGAATAAACACCTTCAATAACCCT-TTAAAA-TT
9543567 TAATAGTGGAATATTGAAGATGTATAGTGTAACAAACG
322 TAATAGTGGAATATTGAAGATGTATAGTGTAACAAACG
* * *
9543605 CCTTCAATAAATTCCTTCAAAAATTAGAATTAACTAGTGAA-CATATTTTCTAAAATAAACGCCT
1 CCTTCAATAAATT-CTTCAAAAATTAGAATGAACTAGTGAAGCAT-TTTTATAAAATAAACGCAT
* * * * *
9543669 TGATTAACCGTCTTAAAATTTTAATAGTGAAATATTGAAGGCGTTTTCTACTAGAAGACGTC-TT
64 TCACTAACCGTCTTAAAATTTTAATAGTGAAATATTGAAGACATTTTCTACTAAAAGACG-CATT
* * *
9543733 TAATAATCTCAAATAATTTTTTAAAAAAAATTATTAAAGGCATTTTTTCTCAAGAAACATCTTTA
128 TAATAATCTCAAACAATTTTTTAAAAAAAATTATTAAAGGCATTTTTTCTCAAGAAACACCTTCA
* * *
9543798 GTAATTATCTACAAAAATTATTGAAGACGTATAATGCAAAAAATACTTTCAATAAATTCTTTCAA
193 ATAATTATCTACAAAAATTATTGAAGACGTATAATGCAAAAAATACCTTCAATAAATTCCTTCAA
* * *
9543863 AAATTAGAACGAATTGGTGAAGGTATTTTTCTGGAATAAACACCTTCAATAACCCTTTAAAATTT
258 AAATTAAAACGAATTAGTGAAGGTATTTTTCTAGAATAAACACCTTCAATAACCCTTTAAAATTT
*
9543928 ATTAGTGGAATAT
323 AATAGTGGAATAT
9543941 CAAAGGTATT
Statistics
Matches: 295, Mismatches: 36, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
360 17 0.06
361 165 0.56
362 113 0.38
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.35
Consensus pattern (359 bp):
CCTTCAATAAATTCTTCAAAAATTAGAATGAACTAGTGAAGCATTTTTATAAAATAAACGCATTC
ACTAACCGTCTTAAAATTTTAATAGTGAAATATTGAAGACATTTTCTACTAAAAGACGCATTTAA
TAATCTCAAACAATTTTTTAAAAAAAATTATTAAAGGCATTTTTTCTCAAGAAACACCTTCAATA
ATTATCTACAAAAATTATTGAAGACGTATAATGCAAAAAATACCTTCAATAAATTCCTTCAAAAA
TTAAAACGAATTAGTGAAGGTATTTTTCTAGAATAAACACCTTCAATAACCCTTTAAAATTTAAT
AGTGGAATATTGAAGATGTATAGTGTAACAAACG
Found at i:9549005 original size:15 final size:15
Alignment explanation
Indices: 9548985--9549020 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
9548975 TACTGTTGGA
*
9548985 TCTAACTCAGTCACT
1 TCTAACTCAATCACT
9549000 TCTAACTCAATCACT
1 TCTAACTCAATCACT
*
9549015 TTTAAC
1 TCTAAC
9549021 CCTTTAACTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.31, C:0.31, G:0.03, T:0.36
Consensus pattern (15 bp):
TCTAACTCAATCACT
Found at i:9554294 original size:17 final size:16
Alignment explanation
Indices: 9554255--9554297 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
9554245 CTTGTTTGGC
9554255 TGTTTGTGTTTGATTGT
1 TGTTTGT-TTTGATTGT
*
9554272 TATTTGTTTTGATTGT
1 TGTTTGTTTTGATTGT
9554288 GTGTTTGTTT
1 -TGTTTGTTT
9554298 GTGTTTTTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 9 0.39
17 14 0.61
ACGTcount: A:0.07, C:0.00, G:0.26, T:0.67
Consensus pattern (16 bp):
TGTTTGTTTTGATTGT
Found at i:9559472 original size:16 final size:17
Alignment explanation
Indices: 9559453--9559497 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
9559443 GAAAACAAAC
9559453 AAAATAAAAAAACGA-A
1 AAAATAAAAAAACGAGA
*
9559469 AAAATAAAAGAAAGGAGA
1 AAAATAAAA-AAACGAGA
9559487 AAGAATAAAAA
1 AA-AATAAAAA
9559498 CAAAAAAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
16 9 0.36
17 5 0.20
18 4 0.16
19 7 0.28
ACGTcount: A:0.78, C:0.02, G:0.13, T:0.07
Consensus pattern (17 bp):
AAAATAAAAAAACGAGA
Found at i:9563152 original size:34 final size:32
Alignment explanation
Indices: 9563109--9563187 Score: 96
Period size: 28 Copynumber: 2.6 Consensus size: 32
9563099 ATTTTAAGTA
9563109 TAAAT-TATTTGAGTTTTATATATTGATTAATGG
1 TAAATGTATTT-A-TTTTATATATTGATTAATGG
9563142 TAAATG----TATTTTATATATTGATTAATGG
1 TAAATGTATTTATTTTATATATTGATTAATGG
*
9563170 TAAATGTATTTATCTTAT
1 TAAATGTATTTATTTTAT
9563188 CATCTACCTA
Statistics
Matches: 40, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
28 26 0.65
29 1 0.03
30 1 0.03
32 7 0.17
33 5 0.12
ACGTcount: A:0.34, C:0.01, G:0.13, T:0.52
Consensus pattern (32 bp):
TAAATGTATTTATTTTATATATTGATTAATGG
Found at i:9563162 original size:28 final size:28
Alignment explanation
Indices: 9563122--9563180 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
9563112 ATTATTTGAG
9563122 TTTTATATATTGATTAATGGTAAATGTA
1 TTTTATATATTGATTAATGGTAAATGTA
9563150 TTTTATATATTGATTAATGGTAAATGTA
1 TTTTATATATTGATTAATGGTAAATGTA
9563178 TTT
1 TTT
9563181 ATCTTATCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.53
Consensus pattern (28 bp):
TTTTATATATTGATTAATGGTAAATGTA
Found at i:9566921 original size:17 final size:17
Alignment explanation
Indices: 9566892--9566924 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
9566882 AAAAGGCTAT
9566892 TTATTCTAGAATTTTTA
1 TTATTCTAGAATTTTTA
9566909 TTATCTCTA-AATTTTT
1 TTAT-TCTAGAATTTTT
9566925 TTTAATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.27, C:0.09, G:0.03, T:0.61
Consensus pattern (17 bp):
TTATTCTAGAATTTTTA
Found at i:9567629 original size:333 final size:333
Alignment explanation
Indices: 9567122--9567782 Score: 976
Period size: 333 Copynumber: 2.0 Consensus size: 333
9567112 AAAATTTTAT
*
9567122 AAATATTATATTATATTTTTATTAAATTGAAAATAAAATGTCAATTAATATTAGTGAATGTTTTT
1 AAATATTATATTATATTTTTATTAAATTGAAAATAAAATGTCAATTAATATTAGTAAATGTTTTT
*
9567187 ATCTAAATTTTTCATGGTCAAAATTAAAAAAGAAAAAACCCTTTTTCACCTAAAAATTTCTTTAA
66 ATCTAAATTTTTCATGGTCAAAATTAAAAAAGAAAAAACCCTTTTTCACCAAAAAATTTCTTTAA
* * * * *
9567252 AAAATTGATCACTCTTGATTTTTAAGAATTTTATGATTGGAATAATTTTCATTTACTTTAAAATA
131 AAAATTAATCAATCTTGATTTTTAAAAATTCTATGATTGGAATAATTTTCATTTACTTTAAAAAA
** * * *
9567317 TTTTATTACAGCTACACAATAAAAATACAATAGAATACC-AAAAAAA-TCAATTTATTAATTGTT
196 TGCTATTACAACTACACAATAAAAAAACAATAGAATACCAAAAAAAATTCAATTTATTAATTATT
*
9567380 ATGTTAAG-TATATCTAATTTTTATTTACCTATCCTAGATATAAATGTAACAGTTTTACTTTTAC
261 ATGTT-AGCTATATCTAATTTTTATTTACCTACCCTAGATATAAATGTAACAGTTTTACTTTTAC
9567444 TATATATTA
325 TATATATTA
* *
9567453 AAATA-TATATTATATTTTTATTCACTTGAAAAT-AAATGTCAATTAATATTAGTAAATGTTTTT
1 AAATATTATATTATATTTTTATTAAATTGAAAATAAAATGTCAATTAATATTAGTAAATGTTTTT
* * *
9567516 ATCTAAAATTTTCGTCAATCGAGTTAATATTAAAAAA-AGAAAA-CCTTTTTCACCAAAAAATTT
66 ATCT-AAATTTT--TC-AT-G-GTCAAAATTAAAAAAGAAAAAACCCTTTTTCACCAAAAAATTT
* *
9567579 CTTTAAAAAGTTAATCAATCTTGATTTTTAAAAATTCTATGATTGGAATAATTTTTATTTACTTT
125 CTTTAAAAAATTAATCAATCTTGATTTTTAAAAATTCTATGATTGGAATAATTTTCATTTACTTT
* *
9567644 AAAAAATGCTATTACAATTACACAATAAAAAAACAATAGAATACCAAAAAAAATTTAATTTATTA
190 AAAAAATGCTATTACAACTACACAATAAAAAAACAATAGAATACCAAAAAAAATTCAATTTATTA
* * * *
9567709 ATTATTGTGTTAGCTATATCTAATTTTTATTTACCTCCCCTATATATAAATGTAATAGTTTTACT
255 ATTATTATGTTAGCTATATCTAATTTTTATTTACCTACCCTAGATATAAATGTAACAGTTTTACT
9567774 TTTACTATA
320 TTTACTATA
9567783 CATTGCAACT
Statistics
Matches: 295, Mismatches: 26, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
329 33 0.11
330 33 0.11
331 5 0.02
332 2 0.01
333 119 0.40
334 15 0.05
335 88 0.30
ACGTcount: A:0.42, C:0.10, G:0.06, T:0.42
Consensus pattern (333 bp):
AAATATTATATTATATTTTTATTAAATTGAAAATAAAATGTCAATTAATATTAGTAAATGTTTTT
ATCTAAATTTTTCATGGTCAAAATTAAAAAAGAAAAAACCCTTTTTCACCAAAAAATTTCTTTAA
AAAATTAATCAATCTTGATTTTTAAAAATTCTATGATTGGAATAATTTTCATTTACTTTAAAAAA
TGCTATTACAACTACACAATAAAAAAACAATAGAATACCAAAAAAAATTCAATTTATTAATTATT
ATGTTAGCTATATCTAATTTTTATTTACCTACCCTAGATATAAATGTAACAGTTTTACTTTTACT
ATATATTA
Found at i:9568105 original size:13 final size:13
Alignment explanation
Indices: 9568072--9568118 Score: 60
Period size: 13 Copynumber: 3.7 Consensus size: 13
9568062 GCGGGATTCA
9568072 TATTTTTTAAATT
1 TATTTTTTAAATT
*
9568085 TATCTTTTAAATT
1 TATTTTTTAAATT
* *
9568098 TATTTTTT-CATC
1 TATTTTTTAAATT
9568110 TATTTTTTA
1 TATTTTTTA
9568119 TTTTTTTTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
12 10 0.34
13 19 0.66
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (13 bp):
TATTTTTTAAATT
Found at i:9568154 original size:12 final size:12
Alignment explanation
Indices: 9568139--9568171 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
9568129 TATTATATTT
9568139 AATATTTTAAAA
1 AATATTTTAAAA
*
9568151 AATATATTAAAA
1 AATATTTTAAAA
9568163 AA-ATTTTAA
1 AATATTTTAA
9568172 GATTCACTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 6 0.32
12 13 0.68
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
AATATTTTAAAA
Found at i:9568626 original size:20 final size:21
Alignment explanation
Indices: 9568601--9568641 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
9568591 TCTTTTTCAA
*
9568601 AATTTACAAT-TTTATTTTTT
1 AATTTACAATATTAATTTTTT
*
9568621 AATTTATAATATTAATTTTTT
1 AATTTACAATATTAATTTTTT
9568642 GATTAAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (21 bp):
AATTTACAATATTAATTTTTT
Found at i:9568813 original size:25 final size:25
Alignment explanation
Indices: 9568759--9568823 Score: 60
Period size: 25 Copynumber: 2.6 Consensus size: 25
9568749 TTGATTAATT
* *
9568759 ATAATTACTATAATGCCCATTTAGC
1 ATAATTACTAAAATGACCATTTAGC
* *
9568784 GTAATTACTAAAAT-ACCATTTTATC
1 ATAATTACTAAAATGACCA-TTTAGC
*
9568809 ATAATTGGCTAAAAT
1 ATAATT-ACTAAAAT
9568824 TCTATAATAC
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
24 3 0.09
25 22 0.69
26 7 0.22
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.37
Consensus pattern (25 bp):
ATAATTACTAAAATGACCATTTAGC
Found at i:9569110 original size:4 final size:4
Alignment explanation
Indices: 9569101--9569150 Score: 57
Period size: 4 Copynumber: 12.5 Consensus size: 4
9569091 GTTCTGAATT
* * *
9569101 TTTA TTTA TTTA TCTA TCTA TTTA TTTA TTTG TTTA TTGT- TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT-TA TTTA TTTA
9569149 TT
1 TT
9569151 AATATTTGTT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
3 1 0.03
4 38 0.95
5 1 0.03
ACGTcount: A:0.20, C:0.04, G:0.04, T:0.72
Consensus pattern (4 bp):
TTTA
Found at i:9569915 original size:16 final size:15
Alignment explanation
Indices: 9569894--9569927 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
9569884 CGTAAAAGTT
9569894 TTTTTTTCATTATTTA
1 TTTTTTTCATTA-TTA
*
9569910 TTTTTTTTATTATTA
1 TTTTTTTCATTATTA
9569925 TTT
1 TTT
9569928 CTACTTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTTTTCATTATTA
Found at i:9570056 original size:59 final size:59
Alignment explanation
Indices: 9569993--9570185 Score: 178
Period size: 59 Copynumber: 3.3 Consensus size: 59
9569983 TTTTCAATGA
9569993 TTTTCCT-AAAATAAAATTTTCAAAAAAAAATTTTTTGAGGAAAAGTTGAAAATATCAAT
1 TTTTCCTGAAAATAAAATTTTCAAAAAAAAA-TTTTTGAGGAAAAGTTGAAAATATCAAT
* * * * * * ** *
9570052 TTTTCTTGAAGATAAAAATTTT-TAAAATATATTTTTAAAAAAAAGTTGAAAGTATCAAT
1 TTTTCCTGAAAAT-AAAATTTTCAAAAAAAAATTTTTGAGGAAAAGTTGAAAATATCAAT
* * * * * *
9570111 TTTTCTTGAAAATAAAA-TTACAAAAAAAAACATTTTGAGGAAAAGTTGGAATTACCAA-
1 TTTTCCTGAAAATAAAATTTTCAAAAAAAAA-TTTTTGAGGAAAAGTTGAAAATATCAAT
*
9570169 TTTTCCTTTAAAATAAA
1 TTTTCC-TGAAAATAAA
9570186 GTAAAAAATA
Statistics
Matches: 106, Mismatches: 23, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
57 2 0.02
58 15 0.14
59 71 0.67
60 10 0.09
61 8 0.08
ACGTcount: A:0.48, C:0.07, G:0.09, T:0.36
Consensus pattern (59 bp):
TTTTCCTGAAAATAAAATTTTCAAAAAAAAATTTTTGAGGAAAAGTTGAAAATATCAAT
Found at i:9570147 original size:118 final size:112
Alignment explanation
Indices: 9570000--9570288 Score: 292
Period size: 114 Copynumber: 2.5 Consensus size: 112
9569990 TGATTTTCCT
* *
9570000 AAAATAAAATTTTCAAAAAAAAATTTTTTGAGGAAAAGTTGAAAATATCAATTTTTCTTGAAGAT
1 AAAATAAAA-TTACAAAAAAAAA-CTTTTGAGGAAAAGTTGAAAATATCAATTTTTCTTGAA-A-
* **
9570065 AAAAATTTTTAAAATATATTTTTAAAAAAAAGTTGAAAGTATCAATTTTTCTTG
62 AAAAA-GTAAAAAATATA-TTTTAAAAAAAAGTTGAAAGTATCAATTTTT-TTG
* * * * * *
9570119 AAAATAAAATTACAAAAAAAAACATTTTGAGGAAAAGTTGGAATTACCAATTTTCCTTTAAAATA
1 AAAATAAAATTACAAAAAAAAAC-TTTTGAGGAAAAGTTGAAAATATCAATTTTTCTTGAAAAAA
* *
9570184 AAGTAAAAAATATATTTTAAGAAAAAGTTGAAAGTATCAATTTTTTTT
65 AAGTAAAAAATATATTTTAAAAAAAAGTTGAAAGTATCAATTTTTTTG
* ** *** ** *
9570232 ACAAAAAAAAAAACCTTAAAATGC-TTTAAGGAAAAGTTGAAAATATCAATTTTTCTT
1 A-AAATAAAATTACAAAAAAAAACTTTTGAGGAAAAGTTGAAAATATCAATTTTTCTT
9570289 ATATAAAAGC
Statistics
Matches: 142, Mismatches: 26, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
112 28 0.20
113 3 0.02
114 44 0.31
115 9 0.06
116 4 0.03
117 1 0.01
118 44 0.31
119 9 0.06
ACGTcount: A:0.49, C:0.06, G:0.09, T:0.35
Consensus pattern (112 bp):
AAAATAAAATTACAAAAAAAAACTTTTGAGGAAAAGTTGAAAATATCAATTTTTCTTGAAAAAAA
AGTAAAAAATATATTTTAAAAAAAAGTTGAAAGTATCAATTTTTTTG
Found at i:9582245 original size:4 final size:4
Alignment explanation
Indices: 9582238--9582287 Score: 68
Period size: 4 Copynumber: 12.8 Consensus size: 4
9582228 TTTTTTTGTC
*
9582238 ATTT ATTT ATTT ATTT ATTT ATTT A-TT A-TT ATTTT GTTT ATTT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT A-TTT ATTT ATTT ATTT
9582285 ATT
1 ATT
9582288 AATTAAATTA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
3 6 0.14
4 34 0.81
5 2 0.05
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (4 bp):
ATTT
Found at i:9582304 original size:35 final size:35
Alignment explanation
Indices: 9582239--9582306 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
9582229 TTTTTTGTCA
* * * **
9582239 TTTATTTATTTATTTATTTATTTATTATTATTTTG
1 TTTATTTATTTATTAATTAAATTAGAATTATTTTG
9582274 TTTATTTATTTATTAATTAAATTAGAATTATTT
1 TTTATTTATTTATTAATTAAATTAGAATTATTT
9582307 AGTATTCCTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 28 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (35 bp):
TTTATTTATTTATTAATTAAATTAGAATTATTTTG
Found at i:9582477 original size:61 final size:61
Alignment explanation
Indices: 9582354--9582641 Score: 348
Period size: 61 Copynumber: 4.7 Consensus size: 61
9582344 TTTTTTCAAA
* * * * *
9582354 AATTTTCCTTAAAAATACAA-TTT--AAAAAAAATATTTGTGAAAAAAAGTTTAAAATATT
1 AATTTTCCTTAAAAATATAATTTTAAAAAAAAAATATTTTTGAGAAAAAGTTGAAAATATC
* * *
9582412 AATTTTCCTTAAAAATACAATTTCAAAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATC
1 AATTTTCCTTAAAAATATAATTTTAAAAAAAAAATATTTTTGAGAAAAAGTTGAAAATATC
* *** * *
9582473 AATTTTTCTTAAAAATATAATTTTTTTAAAAAAATAATTTTTTAAAAAAAGTTGAAAATATC
1 AATTTTCCTTAAAAATATAATTTTAAAAAAAAAAT-ATTTTTGAGAAAAAGTTGAAAATATC
* * * *
9582535 AATTTTCCTTAAAAGTATAATTTTAAAAAATATATATTTTTGAGAAAAAGTTGAAAGTATC
1 AATTTTCCTTAAAAATATAATTTTAAAAAAAAAATATTTTTGAGAAAAAGTTGAAAATATC
* *
9582596 AATTTTCCTTAAAAATATAATTTTTTTAAAAAAAAATTTTTTTGAG
1 AATTTTCCTTAAAAATATAA--TTTTAAAAAAAAAATATTTTTGAG
9582642 GGGGGAAATT
Statistics
Matches: 194, Mismatches: 30, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
58 20 0.10
59 2 0.01
61 101 0.52
62 51 0.26
63 20 0.10
ACGTcount: A:0.49, C:0.05, G:0.06, T:0.40
Consensus pattern (61 bp):
AATTTTCCTTAAAAATATAATTTTAAAAAAAAAATATTTTTGAGAAAAAGTTGAAAATATC
Found at i:9582513 original size:16 final size:17
Alignment explanation
Indices: 9582473--9582522 Score: 75
Period size: 16 Copynumber: 2.9 Consensus size: 17
9582463 TGAAAGTATC
*
9582473 AATTTTTCTTAAAAATAT
1 AATTTTT-TTAAAAAAAT
9582491 AATTTTTTTAAAAAAAT
1 AATTTTTTTAAAAAAAT
9582508 AA-TTTTTTAAAAAAA
1 AATTTTTTTAAAAAAA
9582523 GTTGAAAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
16 13 0.42
17 11 0.35
18 7 0.23
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (17 bp):
AATTTTTTTAAAAAAAT
Found at i:9582531 original size:123 final size:123
Alignment explanation
Indices: 9582354--9582637 Score: 425
Period size: 123 Copynumber: 2.3 Consensus size: 123
9582344 TTTTTTCAAA
* * * * * *
9582354 AATTTTCCTTAAAAATACAA---TTTAAAAAAAAT-ATTTGTGAAAAAAAGTTTAAAATATTAAT
1 AATTTTCCTTAAAAATATAATTTTTTTAAAAAAATAATTTTTTAAAAAAAGTTGAAAATATCAAT
9582415 TTTCCTTAAAAATACAATTTCAAAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATC
66 TTTCCTTAAAAATACAATTTCAAAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATC
*
9582473 AATTTTTCTTAAAAATATAATTTTTTTAAAAAAATAATTTTTTAAAAAAAGTTGAAAATATCAAT
1 AATTTTCCTTAAAAATATAATTTTTTTAAAAAAATAATTTTTTAAAAAAAGTTGAAAATATCAAT
* * * * *
9582538 TTTCCTTAAAAGTATAATTTTAAAAAATATATATTTTTGAGAAAAAGTTGAAAGTATC
66 TTTCCTTAAAAATACAATTTCAAAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATC
9582596 AATTTTCCTTAAAAATATAATTTTTTTAAAAAAA-AATTTTTT
1 AATTTTCCTTAAAAATATAATTTTTTTAAAAAAATAATTTTTT
9582638 TGAGGGGGGA
Statistics
Matches: 148, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
119 18 0.12
122 19 0.13
123 111 0.75
ACGTcount: A:0.49, C:0.05, G:0.06, T:0.40
Consensus pattern (123 bp):
AATTTTCCTTAAAAATATAATTTTTTTAAAAAAATAATTTTTTAAAAAAAGTTGAAAATATCAAT
TTTCCTTAAAAATACAATTTCAAAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATC
Found at i:9582633 original size:16 final size:17
Alignment explanation
Indices: 9582604--9582638 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
9582594 TCAATTTTCC
*
9582604 TTAAAAATATAATTTTT
1 TTAAAAATAAAATTTTT
9582621 TTAAAAA-AAAATTTTT
1 TTAAAAATAAAATTTTT
9582637 TT
1 TT
9582639 GAGGGGGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TTAAAAATAAAATTTTT
Found at i:9582707 original size:123 final size:120
Alignment explanation
Indices: 9582354--9582955 Score: 403
Period size: 123 Copynumber: 5.0 Consensus size: 120
9582344 TTTTTTCAAA
* * * * * *
9582354 AATTTTCCTTAAAAATACAA---TTTAAAAAAAAT-ATTTGTGAAAAAAAGTTTAAAATATTAAT
1 AATTTTCCTTAAAAATATAATTTTTTTAAAAAAATAATTTTTTAAAAAAAGTTGAAAATATCAAT
* * *
9582415 TTTCCTTAAAAATACAATTTCAAAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATC
66 TTTCCTTAAAAGTAAAATTT---TAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATC
*
9582473 AATTTTTCTTAAAAATATAATTTTTTTAAAAAAATAATTTTTTAAAAAAAGTTGAAAATATCAAT
1 AATTTTCCTTAAAAATATAATTTTTTTAAAAAAATAATTTTTTAAAAAAAGTTGAAAATATCAAT
*
9582538 TTTCCTTAAAAGTATAATTTTAAAAAATATATATTTTTGAGAAAAAGTTGAAAGTATC
66 TTTCCTTAAAAGTAAAATTTT-AAAAA-A-ATATTTTTGAGAAAAAGTTGAAAGTATC
*** *
9582596 AATTTTCCTTAAAAATATAATTTTTTTAAAAAAA-AATTTTTTTGAGGGGGGAAA-TTGAAAGTA
1 AATTTTCCTTAAAAATATAATTTTTTTAAAAAAATAA-TTTTTT-A---AAAAAAGTTGAAAATA
* * * * *
9582659 TCGATTTTCTTTGACAA-TAAAAGTGCTTT-TAAAAA-ATTTTTAAG-AAAAGTTGAAAGTATC
61 TCAATTTTCCTT-AAAAGTAAAA-T--TTTAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATC
* * * * * *
9582719 AATTTCCCTTGAAAATAAAAGTGTTCT--AAAAAT-A-TTTTTAAGGAAAAAGTT-AAAAGTATC
1 AATTTTCCTTAAAAATATAATTTTTTTAAAAAAATAATTTTTTAA--AAAAAGTTGAAAA-TATC
* * * * *
9582779 AATTTTTTCTTGAAAA-TAAAATTGTT--AAAAACATTTTTAAGGAAAAGCTGAAAGTATC
63 AA-TTTTCCTT-AAAAGTAAAATT-TTAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATC
* ** * * * *
9582837 AATTTT-TTTAAAAA-ATAA-AATTTT-CAAAAA-CA-TTTTTAAGGAAAAGTT-AACAGTATCA
1 AATTTTCCTTAAAAATATAATTTTTTTAAAAAAATAATTTTTTAA-AAAAAGTTGAA-AATATCA
** * * * * *
9582895 ATTTTTTTTAAGA-TAAAATTTTTAAAAAATATTTTTAAGGAAAA-TTAAAAGTATC
64 ATTTTCCTTAAAAGTAAAATTTTAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATC
9582950 AATTTT
1 AATTTT
9582956 TCTTGTATAA
Statistics
Matches: 403, Mismatches: 50, Indels: 66
0.78 0.10 0.13
Matches are distributed among these distances:
112 2 0.00
113 25 0.06
114 26 0.06
115 19 0.05
116 23 0.06
117 23 0.06
118 29 0.07
119 38 0.09
121 11 0.03
122 14 0.03
123 147 0.36
124 9 0.02
125 1 0.00
126 23 0.06
127 10 0.02
129 3 0.01
ACGTcount: A:0.47, C:0.06, G:0.09, T:0.38
Consensus pattern (120 bp):
AATTTTCCTTAAAAATATAATTTTTTTAAAAAAATAATTTTTTAAAAAAAGTTGAAAATATCAAT
TTTCCTTAAAAGTAAAATTTTAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATC
Found at i:9582736 original size:58 final size:56
Alignment explanation
Indices: 9582441--9582956 Score: 344
Period size: 57 Copynumber: 8.7 Consensus size: 56
9582431 ATTTCAAAAA
* * * * *
9582441 AAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATATAATTTTTTT
1 AAAAACATTTTTAAGGAAAAGTTGAAAGTATCAATTTTT-TTGAAAATA-AA-ATTTTT
* * * * * *
9582500 AAAAAAATAATTTTTTAA-AAAAAGTTGAAAATATCAATTTTCCTT-AAAAGTATAATTTTAAA
1 --AAAAA-CA-TTTTTAAGGAAAAGTTGAAAGTATCAATTTT-TTTGAAAA-TAAAATTTT--T
* * * * * *
9582562 AAATATATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATATAATTTTTTT
1 AAA-A-ACATTTTTAAGGAAAAGTTGAAAGTATCAATTTT-TTTGAAAATA-AA-ATTTTT
* * * * *
9582623 AAAAAAAAATTTTTTTGAGGGGGGAAA-TTGAAAGTATCGATTTTCTTTGACAATAAAAGTGCTT
1 --AAAAACA--TTTTT-A--AGGAAAAGTTGAAAGTATCAATTTT-TTTGAAAATAAAA-T--TT
9582687 TT
55 TT
** *
9582689 AAAAA-ATTTTTAA-GAAAAGTTGAAAGTATCAATTTCCCTTGAAAATAAAAGTGTTCT
1 AAAAACATTTTTAAGGAAAAGTTGAAAGTATCAATTT-TTTTGAAAATAAAA-T-TTTT
* * *
9582746 AAAAATATTTTTAAGGAAAAAGTTAAAAGTATCAATTTTTTCTTGAAAATAAAATTGTT
1 AAAAACATTTTTAAGG-AAAAGTTGAAAGTATCAA-TTTTT-TTGAAAATAAAATTTTT
* * *
9582805 AAAAACATTTTTAAGGAAAAGCTGAAAGTATCAATTTTTTTAAAAAATAAAATTTTC
1 AAAAACATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTTT-GAAAATAAAATTTTT
* *
9582862 AAAAACATTTTTAAGGAAAAGTT-AACAGTATCAATTTTTTTTAAGATAAAATTTTT
1 AAAAACATTTTTAAGGAAAAGTTGAA-AGTATCAATTTTTTTGAAAATAAAATTTTT
* *
9582918 AAAAAATATTTTTAAGGAAAA-TTAAAAGTATCAATTTTT
1 -AAAAACATTTTTAAGGAAAAGTTGAAAGTATCAATTTTT
9582957 CTTGTATAAA
Statistics
Matches: 375, Mismatches: 47, Indels: 71
0.76 0.10 0.14
Matches are distributed among these distances:
56 31 0.08
57 87 0.23
58 52 0.14
59 18 0.05
60 32 0.09
61 62 0.17
62 34 0.09
63 19 0.05
64 8 0.02
65 24 0.06
66 8 0.02
ACGTcount: A:0.46, C:0.05, G:0.10, T:0.39
Consensus pattern (56 bp):
AAAAACATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTTTGAAAATAAAATTTTT
Found at i:9592977 original size:20 final size:18
Alignment explanation
Indices: 9592954--9593036 Score: 58
Period size: 19 Copynumber: 4.3 Consensus size: 18
9592944 ATGCTTGAAA
9592954 AAAAAAGAAAGAAAAAAAT
1 AAAAAA-AAAGAAAAAAAT
* *
9592973 GAAAAAAATGAAAAAAAAT
1 AAAAAAAAAG-AAAAAAAT
** **
9592992 GAGGAAAAAAGTGAAAAAT
1 -AAAAAAAAAGAAAAAAAT
*
9593011 AAAAATAAAAAGTAAAAAAT
1 -AAAA-AAAAAGAAAAAAAT
9593031 AAAAAA
1 AAAAAA
9593037 GGAAGACTCA
Statistics
Matches: 49, Mismatches: 12, Indels: 7
0.72 0.18 0.10
Matches are distributed among these distances:
18 5 0.10
19 25 0.51
20 19 0.39
ACGTcount: A:0.78, C:0.00, G:0.12, T:0.10
Consensus pattern (18 bp):
AAAAAAAAAGAAAAAAAT
Found at i:9592988 original size:10 final size:10
Alignment explanation
Indices: 9592965--9593009 Score: 56
Period size: 10 Copynumber: 4.4 Consensus size: 10
9592955 AAAAAGAAAG
9592965 AAAAAAATG-
1 AAAAAAATGA
9592974 AAAAAAATGA
1 AAAAAAATGA
9592984 AAAAAAATGA
1 AAAAAAATGA
*
9592994 GGAAAAAAGTGA
1 --AAAAAAATGA
9593006 AAAA
1 AAAA
9593010 TAAAAATAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
9 9 0.28
10 14 0.44
12 9 0.28
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.09
Consensus pattern (10 bp):
AAAAAAATGA
Found at i:9593628 original size:24 final size:23
Alignment explanation
Indices: 9593613--9593659 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
9593603 GAGAGTTACT
9593613 CTAACTTGGTCTTTGAAGAATAAC
1 CTAACTTGGTCTTTG-AGAATAAC
*
9593637 GTAACTTGGTCTTTGAAGAATAA
1 CTAACTTGGTCTTTG-AGAATAA
9593660 AGGGTTCGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (23 bp):
CTAACTTGGTCTTTGAGAATAAC
Found at i:9593761 original size:16 final size:16
Alignment explanation
Indices: 9593740--9593770 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9593730 CATTCACGTA
9593740 GCATGCATTGAATTTT
1 GCATGCATTGAATTTT
*
9593756 GCATGCATTGCATTT
1 GCATGCATTGAATTT
9593771 CACATAGCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.42
Consensus pattern (16 bp):
GCATGCATTGAATTTT
Found at i:9594145 original size:44 final size:43
Alignment explanation
Indices: 9594096--9594331 Score: 211
Period size: 44 Copynumber: 5.3 Consensus size: 43
9594086 CAAAGTTCTG
* * * *
9594096 TTTAGAGGAGCTTTGTTTATTTTCTGAAAGTCGTTAAGCCTATC
1 TTTAGAGGAGCTTTGTTTATTTT-TCAAAGTCGTTGAGCCTCTA
* * * *
9594140 TTTAGAGGAGCTTTATTTATTTTTTCAAAATTGTTGAGCCTCTG
1 TTTAGAGGAGCTTTGTTTA-TTTTTCAAAGTCGTTGAGCCTCTA
* *
9594184 TTTAGAAGAGCTTTATTTATCTTTTCAAAGTCGTTGAGCCTCTA
1 TTTAGAGGAGCTTTGTTTAT-TTTTCAAAGTCGTTGAGCCTCTA
* * * * * ** *
9594228 TTTAAAGAAGTTTTGTTTGTTTTTGTAAAGTAATTGAGCTTCTA
1 TTTAGAGGAGCTTTGTTTATTTTT-CAAAGTCGTTGAGCCTCTA
* * *
9594272 TTTAGATGAGCTTTGTTTATTTTTTTCAAAATCGTTGAGCCTCTG
1 TTTAGAGGAGCTTTGTTTA--TTTTTCAAAGTCGTTGAGCCTCTA
* *
9594317 CTTAGAGTAGCTTTG
1 TTTAGAGGAGCTTTG
9594332 ATCAAAATTT
Statistics
Matches: 152, Mismatches: 35, Indels: 9
0.78 0.18 0.05
Matches are distributed among these distances:
43 5 0.03
44 113 0.74
45 29 0.19
46 5 0.03
ACGTcount: A:0.23, C:0.12, G:0.19, T:0.46
Consensus pattern (43 bp):
TTTAGAGGAGCTTTGTTTATTTTTCAAAGTCGTTGAGCCTCTA
Found at i:9594251 original size:88 final size:87
Alignment explanation
Indices: 9594092--9594315 Score: 234
Period size: 88 Copynumber: 2.5 Consensus size: 87
9594082 TTCTCAAAGT
* * * * * * *
9594092 TCTGTTTAGAGGAGCTTTGTTTATTTTCTGAAAGTCGTTAAGCCTATCTTTAGAGGAGCTTTATT
1 TCTGTTTAGAAGAGCTTTGTTTATTTT-TCAAAGTCGTTGAGCCTCTATTTAAAGAAGCTTTATT
**
9594157 TATTTTT-TCAAAATTGTTGAGCC
65 TATTTTTGT-AAAATAATTGAGCC
* * *
9594180 TCTGTTTAGAAGAGCTTTATTTATCTTTTCAAAGTCGTTGAGCCTCTATTTAAAGAAGTTTTGTT
1 TCTGTTTAGAAGAGCTTTGTTTAT-TTTTCAAAGTCGTTGAGCCTCTATTTAAAGAAGCTTTATT
* * *
9594245 TGTTTTTGTAAAGTAATTGAGCT
65 TATTTTTGTAAAATAATTGAGCC
* * *
9594268 TCTATTTAGATGAGCTTTGTTTATTTTTTTCAAAATCGTTGAGCCTCT
1 TCTGTTTAGAAGAGCTTTGTTTA--TTTTTCAAAGTCGTTGAGCCTCT
9594316 GCTTAGAGTA
Statistics
Matches: 113, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
88 87 0.77
89 25 0.22
90 1 0.01
ACGTcount: A:0.23, C:0.12, G:0.18, T:0.47
Consensus pattern (87 bp):
TCTGTTTAGAAGAGCTTTGTTTATTTTTCAAAGTCGTTGAGCCTCTATTTAAAGAAGCTTTATTT
ATTTTTGTAAAATAATTGAGCC
Found at i:9595293 original size:13 final size:13
Alignment explanation
Indices: 9595275--9595306 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
9595265 CAGCCCCTGT
9595275 TGAGCCGCTGAGC
1 TGAGCCGCTGAGC
*
9595288 TGAGCCTCTGAGC
1 TGAGCCGCTGAGC
9595301 TGAGCC
1 TGAGCC
9595307 ATTTCAGTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.16, C:0.31, G:0.34, T:0.19
Consensus pattern (13 bp):
TGAGCCGCTGAGC
Found at i:9595573 original size:60 final size:58
Alignment explanation
Indices: 9595504--9595938 Score: 319
Period size: 60 Copynumber: 7.3 Consensus size: 58
9595494 TTTTTTCAAT
*
9595504 AATTTTCCTTAAAAATACAATTTTCAAAAAAAAAAATTTTGAGAAAAAGTTGAAAGTATC
1 AATTTTCCTTAAAAATAAAATTTTC--AAAAAAAAATTTTGAGAAAAAGTTGAAAGTATC
* * * *
9595564 AATTTTCCTTAAAAATACAATTTCCAAAAAAAATATTTTTAAGAAAAAGTTAAAAGTATC
1 AATTTTCCTTAAAAATAAAATTTTCAAAAAAAA-A-TTTTGAGAAAAAGTTGAAAGTATC
* * * * *
9595624 AATTTTTCTTAAAAATACAATTTTCAAAAAAAAAAATTTTTAGAAGGAGAAAGTTTAAAGTTTC
1 AATTTTCCTTAAAAATAAAATTTTC--AAAAAAAAA-TTTT-G-A-GAAAAAGTTGAAAGTATC
* * ** *
9595688 AATTTTTCTTGAAAATAAAAGTGTTT--TTAAAAAATTTT-AGGAAAAGTTGAAAGTATC
1 AATTTTCCTTAAAAATAAAA-T-TTTCAAAAAAAAATTTTGAGAAAAAGTTGAAAGTATC
* * * * * * *
9595745 AA-TTTCTCTTGAAAATAAAAGTGTTCTAAAAATATTTTTGAAGAAAAAGTTAAAAATATC
1 AATTTTC-CTTAAAAATAAAA-TTTTCAAAAAAAAATTTTG-AGAAAAAGTTGAAAGTATC
* * * *
9595805 AATTTTTCCTTGAAAATAAAATTGTT---AAAAACATTTTTAGGGAAAAGTTGAAAGTATC
1 AA-TTTTCCTTAAAAATAAAATT-TTCAAAAAAAAATTTTGA-GAAAAAGTTGAAAGTATC
** * * * * * * *
9595863 AATTTTTTTTTAAAATAAAATTTTTAAAAAATACTTTTAAGGAAAAGTTGAAAGTGT-
1 AATTTTCCTTAAAAATAAAATTTTCAAAAAAAAATTTTGAGAAAAAGTTGAAAGTATC
* *
9595920 TATTTTTCTTAAAAATAAA
1 AATTTTCCTTAAAAATAAA
9595939 CAACCTCAAA
Statistics
Matches: 309, Mismatches: 45, Indels: 45
0.77 0.11 0.11
Matches are distributed among these distances:
56 7 0.02
57 65 0.21
58 58 0.19
59 10 0.03
60 88 0.28
61 25 0.08
62 18 0.06
63 1 0.00
64 33 0.11
65 1 0.00
66 3 0.01
ACGTcount: A:0.48, C:0.06, G:0.10, T:0.37
Consensus pattern (58 bp):
AATTTTCCTTAAAAATAAAATTTTCAAAAAAAAATTTTGAGAAAAAGTTGAAAGTATC
Found at i:9595747 original size:57 final size:58
Alignment explanation
Indices: 9595548--9595987 Score: 354
Period size: 57 Copynumber: 7.5 Consensus size: 58
9595538 AATTTTGAGA
* * * *** *
9595548 AAAAGTTGAAAGTATCAATTTTCCTTAAAAATACAATTTCCAAAAAAAATATTTTTAAGA
1 AAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAATTT--TTTAAAAATATTTTTAAGG
* * * ** *
9595608 AAAAGTTAAAAGTATCAATTTTTCTTAAAAATACAATTTTCAAAAAAAAAAATTTTTAGAAGG
1 AAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAATTTT---TTAAAAATATTTTT--AAGG
* *
9595671 AGAAAGTTTAAAGTTTCAATTTTTCTTGAAAATAAAAGTGTTTTTAAAAA-A-TTTT-AGG
1 A-AAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAA-T-TTTTTAAAAATATTTTTAAGG
* * * *
9595729 AAAAGTTGAAAGTATCAATTTCTCTTGAAAATAAAAGTGTTCTAAAAATATTTTTGAAGA
1 AAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAA-TTTTTTAAAAATATTTTT-AAGG
* * * * *
9595789 AAAAGTTAAAAATATCAATTTTTCCTTGAAAATAAAA-TTGTTAAAAACATTTTTAGGG
1 AAAAGTTGAAAGTATCAATTTTT-CTTGAAAATAAAATTTTTTAAAAATATTTTTAAGG
* * * *
9595847 AAAAGTTGAAAGTATCAATTTTTTTTTAAAATAAAATTTTTAAAAAATACTTTTAAGG
1 AAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAATTTTTTAAAAATATTTTTAAGG
* * * *** * ** *
9595905 AAAAGTTGAAAGTGT-TATTTTTCTTAAAAATAAACA--ACCTCAAAATGCTTTTAAAG
1 AAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAA-ATTTTTTAAAAATATTTTTAAGG
*
9595961 AAAAGTTGAAAGTATAAATTTTTCTTG
1 AAAAGTTGAAAGTATCAATTTTTCTTG
9595988 TATAAAAGCA
Statistics
Matches: 315, Mismatches: 49, Indels: 35
0.79 0.12 0.09
Matches are distributed among these distances:
56 35 0.11
57 71 0.23
58 62 0.20
59 13 0.04
60 59 0.19
61 30 0.10
62 1 0.00
63 9 0.03
64 31 0.10
65 1 0.00
66 3 0.01
ACGTcount: A:0.46, C:0.07, G:0.10, T:0.37
Consensus pattern (58 bp):
AAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAATTTTTTAAAAATATTTTTAAGG
Found at i:9596628 original size:118 final size:113
Alignment explanation
Indices: 9596498--9596865 Score: 420
Period size: 118 Copynumber: 3.2 Consensus size: 113
9596488 AAAAAATTTA
* ** * *
9596498 AAAGTATCAATTTTTCTTAAAAATAAAATTTTAAAAAAATATATTTTTTTGGGAAAGTTGAAAAT
1 AAAGTATCAATTTTTCTTGAAAATAAAATTTT--AAAAA-ATATTTTTAAGGAAAAGTTGAAAGT
*
9596563 ATCAA-TTTTCTTTAAAAATAAAAGTGCTTTTAAAAAATTTTTAGGAAAAGTTG
63 ATCAATTTTTC-TTGAAAATAAAA-T-CTTTTAAAAAATTTTTAGGAAAAGTTG
*
9596616 AAAGTATTAATTTTTCTTGAAAATAAAAGTGTTCT-AAAAATATTTTTAAGGAAAAAGTTGAAAG
1 AAAGTATCAATTTTTCTTGAAAATAAAA-T-TT-TAAAAAATATTTTTAAGG-AAAAGTTGAAAG
*
9596680 TATCAATTTTTTCTTGAAAATAAAAT-TGTTAAAAACATTTTTAAGGAAAAGTTG
62 TATCAA-TTTTTCTTGAAAATAAAATCTTTTAAAAA-ATTTTT-AGGAAAAGTTG
* * * *
9596734 AAAGTATCAATTTTTCTTGAAAATAAAAGTTTCAAAAATATTTTTAAAGAAAAATTGAAAGTATC
1 AAAGTATCAATTTTTCTTGAAAATAAAATTTTAAAAAATATTTTTAAGGAAAAGTTGAAAGTATC
* * * * * *
9596799 AATTTTTCTTGAAGATAAAAAAC-TTCAAAATACTTTAAGGAAAAGTTG
66 AATTTTTCTTGAAAAT-AAAATCTTTTAAAAAATTTTTAGGAAAAGTTG
9596847 AAAGTATCAATTTTTCTTG
1 AAAGTATCAATTTTTCTTG
9596866 TATTAAAGCA
Statistics
Matches: 220, Mismatches: 19, Indels: 27
0.83 0.07 0.10
Matches are distributed among these distances:
113 30 0.14
114 17 0.08
115 27 0.12
116 25 0.11
117 16 0.07
118 85 0.39
119 12 0.05
120 7 0.03
121 1 0.00
ACGTcount: A:0.45, C:0.05, G:0.11, T:0.38
Consensus pattern (113 bp):
AAAGTATCAATTTTTCTTGAAAATAAAATTTTAAAAAATATTTTTAAGGAAAAGTTGAAAGTATC
AATTTTTCTTGAAAATAAAATCTTTTAAAAAATTTTTAGGAAAAGTTG
Found at i:9596639 original size:58 final size:58
Alignment explanation
Indices: 9596498--9596865 Score: 419
Period size: 57 Copynumber: 6.3 Consensus size: 58
9596488 AAAAAATTTA
* * ** *
9596498 AAAGTATCAATTTTTCTTAAAAATAAAAT-TTTAAAAAAATATATTTTTTTGGGAAAGTTG
1 AAAGTATCAATTTTTCTTGAAAATAAAATGTTT--TAAAA-ATATTTTTAAGGAAAAGTTG
* *
9596558 AAAATATCAA-TTTTCTTTAAAAATAAAAGTGCTTTTAAAAA-ATTTTT-AGGAAAAGTTG
1 AAAGTATCAATTTTTC-TTGAAAATAAAA-TG-TTTTAAAAATATTTTTAAGGAAAAGTTG
* *
9596616 AAAGTATTAATTTTTCTTGAAAATAAAAGTGTTCTAAAAATATTTTTAAGGAAAAAGTTG
1 AAAGTATCAATTTTTCTTGAAAATAAAA-TGTTTTAAAAATATTTTTAAGG-AAAAGTTG
* *
9596676 AAAGTATCAATTTTTTCTTGAAAATAAAAT-TGTTAAAAACATTTTTAAGGAAAAGTTG
1 AAAGTATCAA-TTTTTCTTGAAAATAAAATGTTTTAAAAATATTTTTAAGGAAAAGTTG
* * *
9596734 AAAGTATCAATTTTTCTTGAAAATAAAA-GTTTCAAAAATATTTTTAAAGAAAAATTG
1 AAAGTATCAATTTTTCTTGAAAATAAAATGTTTTAAAAATATTTTTAAGGAAAAGTTG
* *** * *
9596791 AAAGTATCAATTTTTCTTGAAGATAAAA-AACTTCAAAATA-CTTTAAGGAAAAGTTG
1 AAAGTATCAATTTTTCTTGAAAATAAAATGTTTTAAAAATATTTTTAAGGAAAAGTTG
9596847 AAAGTATCAATTTTTCTTG
1 AAAGTATCAATTTTTCTTG
9596866 TATTAAAGCA
Statistics
Matches: 272, Mismatches: 26, Indels: 24
0.84 0.08 0.07
Matches are distributed among these distances:
56 32 0.12
57 83 0.31
58 55 0.20
59 36 0.13
60 40 0.15
61 23 0.08
63 3 0.01
ACGTcount: A:0.45, C:0.05, G:0.11, T:0.38
Consensus pattern (58 bp):
AAAGTATCAATTTTTCTTGAAAATAAAATGTTTTAAAAATATTTTTAAGGAAAAGTTG
Found at i:9596762 original size:32 final size:32
Alignment explanation
Indices: 9596726--9596818 Score: 85
Period size: 32 Copynumber: 3.1 Consensus size: 32
9596716 ATTTTTAAGG
9596726 AAAAGTTGAAAGTATCAATTTTTCTTGAAAAT
1 AAAAGTTGAAAGTATCAATTTTTCTTGAAAAT
** *
9596758 AAAAGTTTCAA--A--AATATTT-TT-AAAGA-
1 AAAAGTTGAAAGTATCAATTTTTCTTGAAA-AT
*
9596784 AAAA-TTGAAAGTATCAATTTTTCTTGAAGAT
1 AAAAGTTGAAAGTATCAATTTTTCTTGAAAAT
9596815 AAAA
1 AAAA
9596819 AACTTCAAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 17
0.66 0.10 0.24
Matches are distributed among these distances:
25 4 0.09
26 7 0.15
27 4 0.09
28 6 0.13
29 6 0.13
30 4 0.09
31 6 0.13
32 9 0.20
ACGTcount: A:0.48, C:0.05, G:0.11, T:0.35
Consensus pattern (32 bp):
AAAAGTTGAAAGTATCAATTTTTCTTGAAAAT
Found at i:9596806 original size:879 final size:860
Alignment explanation
Indices: 9595607--9597339 Score: 2456
Period size: 872 Copynumber: 2.0 Consensus size: 860
9595597 TATTTTTAAG
*
9595607 AAAAAGTTAAAAGTATCAATTTTTCTTAAAAATACAATTTTCAAAAAAAAAAATTTTTAGAAGGA
1 AAAAAGTTAAAAGTATCAATTTTTCTTAAAAATAAAATTTTCAAAAAAAAAAATTTTTA-AAGGA
* * * * *
9595672 GAAAGTTTAAAGTTTCAATTTTTCTTGAAAATAAAAGTGTTTTTAAAAAATTTTAGGAAAAGTTG
65 GAAAGTTGAAAATATCAATTTTTCTTAAAAATAAAAGTGCTTTTAAAAAATTTTAGGAAAAGTTG
9595737 AAAGTATCAATTTCTCTTGAAAATAAAAGTGTTCTAAAAATATTTTTGAAGAAAAAGTTAAAAAT
130 AAAGTATCAATTTCTCTTGAAAATAAAAGTGTTCTAAAAATATTTTTGAAGAAAAAGTTAAAAAT
*
9595802 ATCAATTTTTCCTTGAAAATAAAATTGTTAAAAACATTTTTAGGGAAAAGTTGAAAGTATCAATT
195 ATCAATTTTTCCTTGAAAATAAAATTGTTAAAAACATTTTTAAGGAAAAGTTGAAAGTATCAATT
* * * * * * *
9595867 TTTTTTTAAAATAAAATTTTTAAAAAATACTTTTAAGGAAAAGTTGAAAGTGTTATTTTTCTTAA
260 TTTCTTGAAAATAAAATGTTTAAAAAATACTTTTAAAGAAAAATTGAAAGTATAATTTTTCTTAA
* *
9595932 AAATAAACAACCTCAAAATGCTTTTAAAGAAAAGTTGAAAGTATAAATTTTTCTTGTATAAAAGC
325 AAATAAAAAACCTCAAAATAC-TTTAAAGAAAAGTTGAAAGTATAAATTTTTCTTGTATAAAAGC
**
9595997 ATGAGTTTTTTTTTTAAAAAAAAAGGGATCCATATTAATTGTTATGCTTACTCA-TTTTTTTAAA
389 ATGAGTTTTTTTTTT-----AAAA--GATCCATATTAATCATTATGCTTACTCATTTTTTTTAAA
* * * * *
9596061 TCTTGTTAAATAACCCGACGATGGAGCCTCTATAAGTGAAACAGTAATTTTTTTGTATACTTTTG
447 TCTTGTTAAATAACCCGACGATGGAGCCTCTACAAATGAAACAATAATTTTCTTGTATACTCTTG
* *
9596126 AGGTGAGAGAATTTTCTTAATTTTTTGCCAAAAGTATTGAAGTTAATTAAGAATAATTTTCAATA
512 AGGTGAGAAAATTTTCTTAATTTTCTGCCAAAAGTATTGAAGTTAATTAAGAATAATTTTCAATA
*
9596191 ATTAATTACTTGATAAAATTTTTAAGGCTTATCGGATAACATGAAATTAAACT-GGTACCATTTT
577 ATTAATTACTTGATAAAATTTTTAAGGCTTATCGGATAACATGAAATT-AACTCGGTACCATCTT
* *
9596255 TCGATGGGCGTTGTAAGGGTGTTATAACCTTCCTCACTCGTAACCAAACTCTCGAACCCTATTCT
641 TCGATGGGCATTGTAAGGGTGCTATAACCTTCCTCACTCGTAACCAAACTCTCGAACCCTATTCT
* * *
9596320 AGTTAATAGACCCGAACCTATTCTTTTAGGGACTCTTAAGCTTAGGTGATCTTTAAAAGGATAGA
706 AGTTAATAGACCCG-----A-------AGGGACCCTTAAGCTTAGGTGATCCTTAAAAGAATAGA
** * *
9596385 TTTTTTAGGTGACCAATCGCACCTAAATAAAAAAAAAAATTGATGGTGACTCCTTAAGTCAATGT
759 TTCCTTAAGTGACCAATCGCACCTAAAT--AAAAAAAAATTGATGGCGACTCCTTAAGTCAATGT
9596450 CTAGCGATAGATCCCCAAATCTAGACGTTATGGTAGTTA
822 CTAGCGATAGATCCCCAAATCTAGACGTTATGGTAGTTA
* * * **
9596489 AAAAATTTAAAAGTATCAATTTTTCTTAAAAATAAAATTTT-AAAAAAATATATTTTT-TTGG-G
1 AAAAAGTTAAAAGTATCAATTTTTCTTAAAAATAAAATTTTCAAAAAAAAAAATTTTTAAAGGAG
9596551 AAAGTTGAAAATATCAA-TTTTCTTTAAAAATAAAAGTGCTTTTAAAAAATTTTTAGGAAAAGTT
66 AAAGTTGAAAATATCAATTTTTC-TTAAAAATAAAAGTGCTTTTAAAAAA-TTTTAGGAAAAGTT
* * *
9596615 GAAAGTATTAATTTTTCTTGAAAATAAAAGTGTTCTAAAAATATTTTT-AAGGAAAAAGTTGAAA
129 GAAAGTATCAATTTCTCTTGAAAATAAAAGTGTTCTAAAAATATTTTTGAA-GAAAAAGTTAAAA
* *
9596679 GTATCAATTTTTTCTTGAAAATAAAATTGTTAAAAACATTTTTAAGGAAAAGTTGAAAGTATCAA
193 ATATCAATTTTTCCTTGAAAATAAAATTGTTAAAAACATTTTTAAGGAAAAGTTGAAAGTATCAA
* *
9596744 TTTTTCTTGAAAATAAAA-GTTTCAAAAATATTTTTAAAGAAAAATTGAAAGTATCAATTTTTCT
258 TTTTTCTTGAAAATAAAATGTTTAAAAAATACTTTTAAAGAAAAATTGAAAGTAT-AATTTTTCT
* * * * * *
9596808 TGAAGATAAAAAACTTCAAAATACTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTGTATTAAA
322 TAAAAATAAAAAACCTCAAAATACTTTAAAGAAAAGTTGAAAGTATAAATTTTTCTTGTATAAAA
**
9596873 GCATGAGTTTTTTTTTTTTAAGATCCATATTAATCATTATGCTTACTCATTTTTTTTAAATCTTG
387 GCATGAGTTTTTTTTTTAAAAGATCCATATTAATCATTATGCTTACTCATTTTTTTTAAATCTTG
* * * * *
9596938 TTAAATAATCTGACGATGGAGTCTCTGCAAATGAAACAATAGTTTTCTTGTATACTCTTGAGGTG
452 TTAAATAACCCGACGATGGAGCCTCTACAAATGAAACAATAATTTTCTTGTATACTCTTGAGGTG
* *
9597003 AGAAAATTTTTTTAATTTTCTGTCAAAAGTATTGAAGTTAATTAAGAATAATTTTCAATAATTAA
517 AGAAAATTTTCTTAATTTTCTGCCAAAAGTATTGAAGTTAATTAAGAATAATTTTCAATAATTAA
*
9597068 TTACTTGATAAAATTTTTAAGGCTTATCGGATAACATGAAATTAAGTCGGTACCATCTTTCGATG
582 TTACTTGATAAAATTTTTAAGGCTTATCGGATAACATGAAATTAACTCGGTACCATCTTTCGATG
* * * * * * *
9597133 GGCATTGTGAGGGTGCTATAACCTTCTTCACTTGTAATCGAACTCTCGAACCCTGTTCTGGTTAA
647 GGCATTGTAAGGGTGCTATAACCTTCCTCACTCGTAACCAAACTCTCGAACCCTATTCTAGTTAA
* * * *
9597198 TAGACCCGAAGGGACCCTTAAGCTTAGGTGTTCCTTGAAAGAATAGATTCCTTAAGTGGCTAATC
712 TAGACCCGAAGGGACCCTTAAGCTTAGGTGATCCTTAAAAGAATAGATTCCTTAAGTGACCAATC
* * * *
9597263 GCACCTAAATAAAAAAAGATTGGTGGCGACTCCTTAAGTCAATGTCTAGTGATAGATCCCCAGAT
777 GCACCTAAATAAAAAAAAATTGATGGCGACTCCTTAAGTCAATGTCTAGCGATAGATCCCCAAAT
9597328 CTAGACGTTATG
842 CTAGACGTTATG
9597340 ACATAATTGA
Statistics
Matches: 767, Mismatches: 78, Indels: 36
0.87 0.09 0.04
Matches are distributed among these distances:
858 62 0.08
860 56 0.07
867 1 0.00
871 29 0.04
872 254 0.33
873 2 0.00
877 5 0.01
878 126 0.16
879 179 0.23
881 14 0.02
882 39 0.05
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (860 bp):
AAAAAGTTAAAAGTATCAATTTTTCTTAAAAATAAAATTTTCAAAAAAAAAAATTTTTAAAGGAG
AAAGTTGAAAATATCAATTTTTCTTAAAAATAAAAGTGCTTTTAAAAAATTTTAGGAAAAGTTGA
AAGTATCAATTTCTCTTGAAAATAAAAGTGTTCTAAAAATATTTTTGAAGAAAAAGTTAAAAATA
TCAATTTTTCCTTGAAAATAAAATTGTTAAAAACATTTTTAAGGAAAAGTTGAAAGTATCAATTT
TTCTTGAAAATAAAATGTTTAAAAAATACTTTTAAAGAAAAATTGAAAGTATAATTTTTCTTAAA
AATAAAAAACCTCAAAATACTTTAAAGAAAAGTTGAAAGTATAAATTTTTCTTGTATAAAAGCAT
GAGTTTTTTTTTTAAAAGATCCATATTAATCATTATGCTTACTCATTTTTTTTAAATCTTGTTAA
ATAACCCGACGATGGAGCCTCTACAAATGAAACAATAATTTTCTTGTATACTCTTGAGGTGAGAA
AATTTTCTTAATTTTCTGCCAAAAGTATTGAAGTTAATTAAGAATAATTTTCAATAATTAATTAC
TTGATAAAATTTTTAAGGCTTATCGGATAACATGAAATTAACTCGGTACCATCTTTCGATGGGCA
TTGTAAGGGTGCTATAACCTTCCTCACTCGTAACCAAACTCTCGAACCCTATTCTAGTTAATAGA
CCCGAAGGGACCCTTAAGCTTAGGTGATCCTTAAAAGAATAGATTCCTTAAGTGACCAATCGCAC
CTAAATAAAAAAAAATTGATGGCGACTCCTTAAGTCAATGTCTAGCGATAGATCCCCAAATCTAG
ACGTTATGGTAGTTA
Found at i:9597795 original size:43 final size:42
Alignment explanation
Indices: 9597659--9597870 Score: 189
Period size: 43 Copynumber: 5.0 Consensus size: 42
9597649 ATTGTTAAAG
* *
9597659 AGTATTTTATTTTTTC-AAAGTCATGGTTACCTCTATTTAGAGA
1 AGTAATTTA-TTTTTCAAAAGTCATGG-TACCTCTGTTTAGAGA
* * * *
9597702 AGCAATTTA-TTTTCTAATGTCATGGTCGCCTCTGTTTAGATG-
1 AGTAATTTATTTTTCAAAAGTCATGGT-ACCTCTGTTTAGA-GA
*
9597744 AGTGATTTATTTTTTCAAAAGTCATGGTACCTCTGTTTAGAGA
1 AGTAATTTA-TTTTTCAAAAGTCATGGTACCTCTGTTTAGAGA
* * * * *
9597787 AGTAATTTATTTTTCAAAAGTTATGGTTGCCTCTATTTAAAGG
1 AGTAATTTATTTTTCAAAAGTCATGG-TACCTCTGTTTAGAGA
* * * *
9597830 AGTAATTTATTGTTCCAAAGTTATTG-AGCCTCTGTTTAGAG
1 AGTAATTTATTTTTCAAAAGTCATGGTA-CCTCTGTTTAGAG
9597871 GAGCTTTATT
Statistics
Matches: 139, Mismatches: 22, Indels: 17
0.78 0.12 0.10
Matches are distributed among these distances:
41 6 0.04
42 55 0.40
43 63 0.45
44 15 0.11
ACGTcount: A:0.27, C:0.12, G:0.17, T:0.43
Consensus pattern (42 bp):
AGTAATTTATTTTTCAAAAGTCATGGTACCTCTGTTTAGAGA
Found at i:9597850 original size:85 final size:83
Alignment explanation
Indices: 9597653--9597870 Score: 240
Period size: 85 Copynumber: 2.6 Consensus size: 83
9597643 GACATGATTG
* * * *
9597653 TTAAAGAGTATTTTATTTTTTCAAAGTCATGGTTACCTCTATTTAGAGAAGCAATTTATTTTCTA
1 TTAAAGAGTAATTTATTTTTCCAAAGTCATGG-TACCTCTGTTTAGAGAAGCAATTTATTTTCAA
* *
9597718 ATGTCATGGTCGCCTCTGT
65 AAGTCATGGTCGCCTCTAT
* * * *
9597737 TTAGATGAGTGATTTATTTTTTCAAAAGTCATGGTACCTCTGTTTAGAGAAGTAATTTATTTTTC
1 TTA-AAGAGTAATTTA-TTTTTCCAAAGTCATGGTACCTCTGTTTAGAGAAGCAATTTA-TTTTC
* *
9597802 AAAAGTTATGGTTGCCTCTAT
63 AAAAGTCATGGTCGCCTCTAT
* * *
9597823 TTAAAGGAGTAATTTATTGTTCCAAAGTTATTG-AGCCTCTGTTTAGAG
1 TTAAA-GAGTAATTTATTTTTCCAAAGTCATGGTA-CCTCTGTTTAGAG
9597871 GAGCTTTATT
Statistics
Matches: 111, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
84 4 0.04
85 59 0.53
86 48 0.43
ACGTcount: A:0.28, C:0.12, G:0.17, T:0.43
Consensus pattern (83 bp):
TTAAAGAGTAATTTATTTTTCCAAAGTCATGGTACCTCTGTTTAGAGAAGCAATTTATTTTCAAA
AGTCATGGTCGCCTCTAT
Found at i:9598925 original size:15 final size:13
Alignment explanation
Indices: 9598905--9598975 Score: 58
Period size: 12 Copynumber: 5.3 Consensus size: 13
9598895 TATTTTTTTC
9598905 ATTATTTATTTATTT
1 ATTA-TTATTTA-TT
*
9598920 ATTATTA-TTACT
1 ATTATTATTTATT
9598932 ATTATTA-TTATT
1 ATTATTATTTATT
*
9598944 ATTATTATTT-CT
1 ATTATTATTTATT
9598956 ACTTATTTATTTATT
1 A-TTA-TTATTTATT
9598971 GATTA
1 -ATTA
9598976 AATTGGAATT
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
12 21 0.45
13 8 0.17
14 9 0.19
15 8 0.17
16 1 0.02
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (13 bp):
ATTATTATTTATT
Found at i:9598926 original size:3 final size:3
Alignment explanation
Indices: 9598918--9598952 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
9598908 ATTTATTTAT
*
9598918 TTA TTA TTA TTA CTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
9598953 TCTACTTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:9599095 original size:60 final size:58
Alignment explanation
Indices: 9599030--9599447 Score: 483
Period size: 60 Copynumber: 7.1 Consensus size: 58
9599020 GATTTTCCTT
* *
9599030 AAATAAAATTTTAAAAATATATATTTTTGAGGAAAAGTTGAAAGTATAAATTTTTCTTAA
1 AAATAAAATTTTAAAAA-A-ATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAA
*
9599090 AAATAAAAATTTTAAAAAATATATTTTTGAGAAAAAGTTGAAAGTATCAAATTTTCTTAA
1 AAAT-AAAATTTTAAAAAA-ATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAA
*
9599150 AAATAAAAATTTCT-AAAAAATATTTTTGAGAAAAAATTGAAAGTATCAATTTTTCTTAA
1 AAAT-AAAATTT-TAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAA
* * * *
9599209 AAATAAAATTTTTAAAAAATATTTTTAAG-GAAAGTTGAAAGTATCAATTTTTCTTGA
1 AAATAAAATTTTAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAA
** * * * * * *
9599266 AAATAAAATTACAAAAAAAAACATTTTGAGAAAAATTTGGAATTACCAATTTTTCTT-A
1 AAATAAAATTTTAAAAAAATA-TTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAA
* * *
9599324 AAAT-AAA--GTAAAAAAATATATTTTAAGAAAAAGTTGAAAGTATCAATTTTTCTTGA
1 AAATAAAATTTTAAAAAAATAT-TTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAA
*
9599380 AAATAAAATTAAAATTAAAAAAA-A-ATTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAA
1 AAATAAAATT----TTAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAA
*
9599440 AAAAAAAA
1 AAATAAAA
9599448 AAACTTAAAA
Statistics
Matches: 310, Mismatches: 34, Indels: 28
0.83 0.09 0.08
Matches are distributed among these distances:
55 37 0.12
56 5 0.02
57 49 0.16
58 33 0.11
59 63 0.20
60 100 0.32
61 14 0.05
62 1 0.00
63 8 0.03
ACGTcount: A:0.52, C:0.04, G:0.09, T:0.35
Consensus pattern (58 bp):
AAATAAAATTTTAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAA
Found at i:9599298 original size:116 final size:116
Alignment explanation
Indices: 9599054--9599447 Score: 510
Period size: 116 Copynumber: 3.4 Consensus size: 116
9599044 AAATATATAT
* * *
9599054 TTTTGAGGAAAAGTTGAAAGTATAAATTTTTCTTAAAAATAAAAATTTTAAAAAATATATTTTTG
1 TTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAAATTTTAAAAAA-ATATTTTTA
* * * * * *
9599119 AGAAAAAGTTGAAAGTATCAAATTTTCTTAAAAATAAAAATTTCTAAAAAATAT
64 AGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAAT-AAAATTACAAAAAAAAAA
* *
9599173 TTTTGAGAAAAAATTGAAAGTATCAATTTTTCTTAAAAATAAAATTTTTAAAAAATATTTTTAAG
1 TTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTTAAAAAAATATTTTTAAG
*
9599238 -GAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAATTACAAAAAAAAACA
66 AAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAATTACAAAAAAAAA-A
* * * * *
9599289 TTTTGAGAAAAATTTGGAATTACCAATTTTTCTT-AAAAT-AAA--GTAAAAAAATATATTTTAA
1 TTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTTAAAAAAATAT-TTTTAA
*
9599350 GAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAATTAAAATTAAAAAAAA
65 GAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAATTACAA--AAAAAAAA
* *
9599404 ATTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAAAAAAA
1 TTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAA
9599448 AAACTTAAAA
Statistics
Matches: 242, Mismatches: 26, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
112 10 0.04
113 7 0.03
114 43 0.18
115 49 0.20
116 70 0.29
117 13 0.05
118 13 0.05
119 37 0.15
ACGTcount: A:0.51, C:0.04, G:0.09, T:0.35
Consensus pattern (116 bp):
TTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTTAAAAAAATATTTTTAAG
AAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAATTACAAAAAAAAAA
Found at i:9600239 original size:111 final size:110
Alignment explanation
Indices: 9600076--9600279 Score: 261
Period size: 111 Copynumber: 1.8 Consensus size: 110
9600066 ATGCATTCTC
** * * * *
9600076 ACCATAATTATGAAAATAACCTCATATTATAATTAGCTAAAATTATTATAATA-CCATTTAATCA
1 ACCATAATTACAAAAATAACCTCATATTATAATTAGCCAAAATTACTATAATATCC-TCTAAGCA
*
9600140 TAATTACAAAAAAATCCCTTTTGATTACTTTATATAATGTTTCTTCA
65 TAATTACAAAAAAA-CCATTTTGATTACTTTATATAATGTTTCTTCA
*
9600187 ACCATAATTACAAAAAT-ACGCTCATATTATAATT-GACCAAAATTACTATAATATTCTCTAAGC
1 ACCATAATTACAAAAATAAC-CTCATATTATAATTAG-CCAAAATTACTATAATATCCTCTAAGC
* *
9600250 ATAATTATAAAAATACCATTTTGATTACTT
64 ATAATTACAAAAAAACCATTTTGATTACTT
9600280 CATAATTGCA
Statistics
Matches: 80, Mismatches: 10, Indels: 7
0.82 0.10 0.07
Matches are distributed among these distances:
110 17 0.21
111 62 0.77
112 1 0.01
ACGTcount: A:0.43, C:0.15, G:0.04, T:0.38
Consensus pattern (110 bp):
ACCATAATTACAAAAATAACCTCATATTATAATTAGCCAAAATTACTATAATATCCTCTAAGCAT
AATTACAAAAAAACCATTTTGATTACTTTATATAATGTTTCTTCA
Found at i:9602904 original size:9 final size:9
Alignment explanation
Indices: 9602852--9602908 Score: 53
Period size: 9 Copynumber: 6.3 Consensus size: 9
9602842 TTAATATGTT
9602852 TATATTAAA
1 TATATTAAA
* *
9602861 TTAAAATAAA
1 -TATATTAAA
*
9602871 TATA-AAAA
1 TATATTAAA
9602879 TATATTAAA
1 TATATTAAA
* *
9602888 CATGTTAAA
1 TATATTAAA
9602897 TATATTAAA
1 TATATTAAA
9602906 TAT
1 TAT
9602909 TTACTCGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
8 7 0.19
9 23 0.62
10 7 0.19
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (9 bp):
TATATTAAA
Found at i:9603121 original size:12 final size:11
Alignment explanation
Indices: 9603099--9603129 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
9603089 TTTTAAAATA
9603099 TATATAATTTT
1 TATATAATTTT
9603110 TATATCAATTTT
1 TATAT-AATTTT
9603122 TATATAAT
1 TATATAAT
9603130 CATATTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (11 bp):
TATATAATTTT
Found at i:9616593 original size:13 final size:14
Alignment explanation
Indices: 9616577--9616609 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
9616567 AATATTTTGA
9616577 TATTTAAAT-ATTT
1 TATTTAAATGATTT
9616590 TA-TTAAATGATTT
1 TATTTAAATGATTT
9616603 TATTTAA
1 TATTTAA
9616610 TTTGTTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 6 0.33
13 8 0.44
14 4 0.22
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (14 bp):
TATTTAAATGATTT
Found at i:9628008 original size:15 final size:16
Alignment explanation
Indices: 9627988--9628017 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
9627978 TTAATTTGAA
9627988 AATATAAAA-AATTAT
1 AATATAAAATAATTAT
9628003 AATATAAAATAATTA
1 AATATAAAATAATTA
9628018 AATTTTGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AATATAAAATAATTAT
Found at i:9631214 original size:59 final size:59
Alignment explanation
Indices: 9631104--9631239 Score: 211
Period size: 59 Copynumber: 2.3 Consensus size: 59
9631094 TTCAGAAACA
* **
9631104 CCTTAAATGATCCTTTTA-TTTTTTTTATAAAAAAATTAATTAAGGTGTTTTTGTGGTG
1 CCTTAAATGATCATTTTATTTTTTTTTATAAAAAAATTAATTAAGGCATTTTTGTGGTG
* *
9631162 CTTTAAATGATCATTTTATTTTTTTTTATAAAAAAATTATTTAAGGCATTTTTGTGGTG
1 CCTTAAATGATCATTTTATTTTTTTTTATAAAAAAATTAATTAAGGCATTTTTGTGGTG
*
9631221 CCTTAGATGATCATTTTAT
1 CCTTAAATGATCATTTTAT
9631240 AAATTTTTTT
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
58 16 0.23
59 54 0.77
ACGTcount: A:0.29, C:0.07, G:0.12, T:0.51
Consensus pattern (59 bp):
CCTTAAATGATCATTTTATTTTTTTTTATAAAAAAATTAATTAAGGCATTTTTGTGGTG
Found at i:9631247 original size:59 final size:59
Alignment explanation
Indices: 9631104--9631268 Score: 190
Period size: 59 Copynumber: 2.8 Consensus size: 59
9631094 TTCAGAAACA
* ** * **
9631104 CCTTAAATGATCCTTTTAT-TTTTTTTATAAAAAAATTAATTAAGGTGTTTTTGTGGTG
1 CCTTAAATGATCATTTTATAAATTTTTATAAAAAAATTATTTAAGGCATTTTTGTGGTG
* ***
9631162 CTTTAAATGATCATTTTATTTTTTTTTATAAAAAAATTATTTAAGGCATTTTTGTGGTG
1 CCTTAAATGATCATTTTATAAATTTTTATAAAAAAATTATTTAAGGCATTTTTGTGGTG
* * * *
9631221 CCTTAGATGATCATTTTATAAATTTTT-TTAAAAGATCATTTAAGGCAT
1 CCTTAAATGATCATTTTATAAATTTTTATAAAAAAATTATTTAAGGCAT
9631269 GATCTTTTTA
Statistics
Matches: 93, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
58 35 0.38
59 58 0.62
ACGTcount: A:0.32, C:0.07, G:0.12, T:0.49
Consensus pattern (59 bp):
CCTTAAATGATCATTTTATAAATTTTTATAAAAAAATTATTTAAGGCATTTTTGTGGTG
Found at i:9631302 original size:40 final size:40
Alignment explanation
Indices: 9631227--9631304 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 40
9631217 GGTGCCTTAG
* *
9631227 ATGATCATTTTATAAATTTTTTTAAAAGATCATTTAAGGC
1 ATGATCATTTTATAAAATTTTTTAAAAGATAATTTAAGGC
*
9631267 ATGATCTTTTTATAAAATTTTTT-AAAGAATAATTTAAG
1 ATGATCATTTTATAAAATTTTTTAAAAG-ATAATTTAAG
9631305 ATGTTTTTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.46
Consensus pattern (40 bp):
ATGATCATTTTATAAAATTTTTTAAAAGATAATTTAAGGC
Found at i:9635693 original size:24 final size:24
Alignment explanation
Indices: 9635666--9635720 Score: 92
Period size: 24 Copynumber: 2.2 Consensus size: 24
9635656 ATGATATTAT
9635666 TCAAATTCAAAAAGATAGAAAAAA
1 TCAAATTCAAAAAGATAGAAAAAA
*
9635690 TCAAATTCAAAGAGATAGAAAAAA
1 TCAAATTCAAAAAGATAGAAAAAA
9635714 TGCAAAT
1 T-CAAAT
9635721 ATTTTTGGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 24 0.83
25 5 0.17
ACGTcount: A:0.62, C:0.09, G:0.11, T:0.18
Consensus pattern (24 bp):
TCAAATTCAAAAAGATAGAAAAAA
Found at i:9640207 original size:3 final size:3
Alignment explanation
Indices: 9640199--9640227 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
9640189 ATTTTGAAAT
9640199 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
9640228 TTCAAATCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:9640865 original size:11 final size:11
Alignment explanation
Indices: 9640843--9640881 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
9640833 TAATAAAAAT
*
9640843 TAAAAAAATAA
1 TAAAATAATAA
*
9640854 TAAGATAATAA
1 TAAAATAATAA
9640865 TAAAATAATAA
1 TAAAATAATAA
9640876 GTAAAA
1 -TAAAA
9640882 GACTATTTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
11 19 0.79
12 5 0.21
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (11 bp):
TAAAATAATAA
Found at i:9641219 original size:13 final size:13
Alignment explanation
Indices: 9641201--9641233 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
9641191 GTTGAATAGT
*
9641201 TTTATTTTATTTA
1 TTTATTTTATTGA
9641214 TTTATTTTATTGA
1 TTTATTTTATTGA
9641227 TTTATTT
1 TTTATTT
9641234 GCCTAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (13 bp):
TTTATTTTATTGA
Found at i:9645319 original size:13 final size:13
Alignment explanation
Indices: 9645303--9645327 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9645293 TGAAAACAAG
9645303 AAGAAAAAAAAGA
1 AAGAAAAAAAAGA
9645316 AAGAAAAAAAAG
1 AAGAAAAAAAAG
9645328 TCAATGGGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (13 bp):
AAGAAAAAAAAGA
Found at i:9645794 original size:13 final size:13
Alignment explanation
Indices: 9645776--9645800 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9645766 AATCGATACA
9645776 AAAAAATAAAAAT
1 AAAAAATAAAAAT
9645789 AAAAAATAAAAA
1 AAAAAATAAAAA
9645801 AAATGAGAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:9647561 original size:42 final size:42
Alignment explanation
Indices: 9647460--9647602 Score: 121
Period size: 42 Copynumber: 3.4 Consensus size: 42
9647450 AAAATCACTT
* ** *
9647460 AGTGATGATATTCGAGTATTAAAAGTCTA-AATT-TTTTCTTCTC
1 AGTGATGATATTTGAGTATT-AAAG-CTAGAATTGAATT-TTCTG
* * *
9647503 TGTGGTGATATCTGAGTATTAAAGCTAGAATTGAATTTTCTCG
1 AGTGATGATATTTGAGTATTAAAGCTAGAATTGAATTTTCT-G
* * ** *
9647546 A-TGATGATATTTGAGTGTTAAAGCTTGAATTTCATTTTCTT
1 AGTGATGATATTTGAGTATTAAAGCTAGAATTGAATTTTCTG
9647587 AGTGATGATATTTGAG
1 AGTGATGATATTTGAG
9647603 ACATTTTGAA
Statistics
Matches: 81, Mismatches: 15, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
41 4 0.05
42 59 0.73
43 18 0.22
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.43
Consensus pattern (42 bp):
AGTGATGATATTTGAGTATTAAAGCTAGAATTGAATTTTCTG
Done.