Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14313602
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 50000 characters in sequence are not A, C, G, or T
File 61 of 74
Found at i:12065688 original size:99 final size:101
Alignment explanation
Indices: 12065569--12065801 Score: 235
Period size: 99 Copynumber: 2.3 Consensus size: 101
12065559 CTTAATAGTT
* * ** * *
12065569 TTAAAAATTCTTATCTTGAAAAGGCTCTTTTAAAG-AGAA-GCTTAATAACTTTAAAAATTTTTA
1 TTAAAAATTCTCATTTTGAAAAGGCTCTTTTAAAGCA-AAGGCCCAATAACTTTAAAAATTCTCA
* * *
12065632 TCATGTG-AAAGGCTCTTTTAAATAG-TGCTTAATGAC
65 TCATG-GAAAAGGCTCATTTAAATAGAGGCTTAACGAC
* * *
12065668 TTAAAAATTCCCATTTTGAAATGGCT-TTTCT-AAGCAAAGGCCCAATGACTTTAAAAATTCTCA
1 TTAAAAATTCTCATTTTGAAAAGGCTCTTT-TAAAGCAAAGGCCCAATAACTTTAAAAATTCTCA
* *
12065731 TTATGGAAAAGGCTCATTTAAGTAGAAGGCTTAACGAC
65 TCATGGAAAAGGCTCATTTAAATAG-AGGCTTAACGAC
* * *
12065769 TTTAAAATTTTCATTTTGAAAAGGCTCCTTTAA
1 TTAAAAATTCTCATTTTGAAAAGGCTCTTTTAA
12065802 GTAGAGGTTT
Statistics
Matches: 107, Mismatches: 19, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
98 9 0.08
99 63 0.59
101 32 0.30
102 3 0.03
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (101 bp):
TTAAAAATTCTCATTTTGAAAAGGCTCTTTTAAAGCAAAGGCCCAATAACTTTAAAAATTCTCAT
CATGGAAAAGGCTCATTTAAATAGAGGCTTAACGAC
Found at i:12065801 original size:50 final size:51
Alignment explanation
Indices: 12065542--12065980 Score: 229
Period size: 50 Copynumber: 8.8 Consensus size: 51
12065532 GACAAAGAAA
* * * *
12065542 GCTCCTTTAAGCA-AAGGCTTAAT-AGTTTTAAAAATTCTT-ATCTTGAAAAG
1 GCTCTTTTAAGTAGAAGGCTTAATGA-CTTTAAAAATT-TTCATTTTGAAAAG
* * *
12065592 GCTCTTTTAAAG-AGAA-GCTTAATAACTTTAAAAATTTTTATCATGTG-AAAG
1 GCTCTTTT-AAGTAGAAGGCTTAATGACTTTAAAAATTTTCAT--TTTGAAAAG
* * ** *
12065643 GCTCTTTTAAATAG--TGCTTAATGAC-TTAAAAATTCCCATTTTGAAATG
1 GCTCTTTTAAGTAGAAGGCTTAATGACTTTAAAAATTTTCATTTTGAAAAG
* ** * *
12065691 GCT-TTTCTAAGCA-AAGGCCCAATGACTTTAAAAATTCTCATTATGGAAAAG
1 GCTCTTT-TAAGTAGAAGGCTTAATGACTTTAAAAATTTTCATT-TTGAAAAG
* *
12065742 GCTCATTTAAGTAGAAGGCTTAACGACTTT-AAAATTTTCATTTTGAAAAG
1 GCTCTTTTAAGTAGAAGGCTTAATGACTTTAAAAATTTTCATTTTGAAAAG
* * * * * *
12065792 GCTCCTTTAAGTAG-AGGTTTTACGACTTT-AAAATTTTCATATTGAAAAAA
1 GCTCTTTTAAGTAGAAGGCTTAATGACTTTAAAAATTTTCATTTTG-AAAAG
* * * * * * * * **
12065842 GCCCATCTAAGCAG-AGG-TTCAATCATTTTGAAAA-TCTCATCTTAAAAAAG
1 GCTCTTTTAAGTAGAAGGCTT-AATGACTTTAAAAATTTTCAT-TTTGAAAAG
* * * *
12065892 GCT-TCTCTAAGTAG-AGGCTCAATGATTTTAAACATTTTCATTTTGAAAAAG
1 GCTCT-TTTAAGTAGAAGGCTTAATGACTTTAAAAATTTTCATTTTG-AAAAG
* *
12065943 GCT-TATTAAAGTAG-AGG-TTCAATGACTTTAAAATTTTT
1 GCTCT-TTTAAGTAGAAGGCTT-AATGACTTTAAAAATTTT
12065981 TATCTTTTTT
Statistics
Matches: 303, Mismatches: 61, Indels: 49
0.73 0.15 0.12
Matches are distributed among these distances:
47 6 0.02
48 10 0.03
49 50 0.17
50 130 0.43
51 90 0.30
52 17 0.06
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.36
Consensus pattern (51 bp):
GCTCTTTTAAGTAGAAGGCTTAATGACTTTAAAAATTTTCATTTTGAAAAG
Found at i:12065837 original size:49 final size:50
Alignment explanation
Indices: 12065584--12065839 Score: 177
Period size: 49 Copynumber: 5.1 Consensus size: 50
12065574 AATTCTTATC
* ** *
12065584 TTGAAAAGGCTCTTTTAAAG-AGAA-GCTTAATAACTTTAAAAATTTTTATCA
1 TTGAAAAGGCTCATTT-AAGTAGAAGGCTTAACGACTTT-AAAATTTTCAT-A
* * * * * ** *
12065635 TGTG-AAAGGCTCTTTTAAATAG--TGCTTAATGACTTAAAAATTCCCATT
1 T-TGAAAAGGCTCATTTAAGTAGAAGGCTTAACGACTTTAAAATTTTCATA
* * * ** * *
12065683 TTGAAATGGCT-TTTCTAAGCA-AAGGCCCAATGACTTTAAAAATTCTCATTA
1 TTGAAAAGGCTCATT-TAAGTAGAAGGCTTAACGACTTT-AAAATTTTCA-TA
* *
12065734 TGGAAAAGGCTCATTTAAGTAGAAGGCTTAACGACTTTAAAATTTTCATT
1 TTGAAAAGGCTCATTTAAGTAGAAGGCTTAACGACTTTAAAATTTTCATA
* * *
12065784 TTGAAAAGGCTCCTTTAAGTAG-AGGTTTTACGACTTTAAAATTTTCATA
1 TTGAAAAGGCTCATTTAAGTAGAAGGCTTAACGACTTTAAAATTTTCATA
12065833 TTGAAAA
1 TTGAAAA
12065840 AAGCCCATCT
Statistics
Matches: 164, Mismatches: 30, Indels: 24
0.75 0.14 0.11
Matches are distributed among these distances:
47 5 0.03
48 11 0.07
49 49 0.30
50 43 0.26
51 39 0.24
52 17 0.10
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (50 bp):
TTGAAAAGGCTCATTTAAGTAGAAGGCTTAACGACTTTAAAATTTTCATA
Found at i:12065976 original size:100 final size:97
Alignment explanation
Indices: 12065662--12065976 Score: 254
Period size: 101 Copynumber: 3.1 Consensus size: 97
12065652 AATAGTGCTT
* * ** * * * * *
12065662 AATGACTTAAAAATTCCCATTTTGAAATGGCTTTTCTAAGCAAAGGCCCAATGACTTTAAAAATT
1 AATGACTTTAAAA-TCTCATTTAAAAAAGGCTTCTCTAAGTAGAGGCTCAATGACTTT-AAAATT
* * *
12065727 CTCATTATGGAAAAGGCTCATTTAAGTAGAAGGCTT-
64 TTCATTTTGAAAAAGGCTCA-TTAAGTAG-AGG-TTC
* * ** * * * ** *
12065763 AACGACTTTAAAATTTTCATTTTGAAAAGGCTCCTTTAAGTAGAGGTTTTACGACTTTAAAATTT
1 AATGACTTTAAAA-TCTCATTTAAAAAAGGCTTCTCTAAGTAGAGGCTCAATGACTTTAAAATTT
* * * *
12065828 TCATATTGAAAAAAGCCCATCTAAGCAGAGGTTC
65 TCATTTTGAAAAAGGCTCAT-TAAGTAGAGGTTC
* * *
12065862 AATCATTTTGAAAATCTCATCTTAAAAAAGGCTTCTCTAAGTAGAGGCTCAATGATTTTAAACAT
1 AATGACTTT-AAAATCTCAT-TTAAAAAAGGCTTCTCTAAGTAGAGGCTCAATGACTTTAAA-AT
*
12065927 TTTCATTTTGAAAAAGGCTTATTAAAGTAGAGGTTC
63 TTTCATTTTGAAAAAGGCTCATT-AAGTAGAGGTTC
12065963 AATGACTTTAAAAT
1 AATGACTTTAAAAT
12065977 TTTTTATCTT
Statistics
Matches: 166, Mismatches: 42, Indels: 13
0.75 0.19 0.06
Matches are distributed among these distances:
98 2 0.01
99 15 0.09
100 68 0.41
101 81 0.49
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (97 bp):
AATGACTTTAAAATCTCATTTAAAAAAGGCTTCTCTAAGTAGAGGCTCAATGACTTTAAAATTTT
CATTTTGAAAAAGGCTCATTAAGTAGAGGTTC
Found at i:12066861 original size:7 final size:8
Alignment explanation
Indices: 12066832--12066860 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
12066822 TTTTCTCTTA
12066832 TTTTTTAT
1 TTTTTTAT
12066840 TTTTTTAT
1 TTTTTTAT
12066848 TTTTTTAT
1 TTTTTTAT
12066856 TTTTT
1 TTTTT
12066861 AAGCAAAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (8 bp):
TTTTTTAT
Found at i:12072043 original size:22 final size:24
Alignment explanation
Indices: 12072013--12072062 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
12072003 GGTTTGAAAT
*
12072013 AAAAAG-AAAAT-AGAGAAAG-TG
1 AAAAAGAAAAATGAGAAAAAGTTG
12072034 AAAAAGGAAAAATGAGAAAAAGTTG
1 AAAAA-GAAAAATGAGAAAAAGTTG
12072059 AAAA
1 AAAA
12072063 TTTTGGCCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 5 0.21
22 1 0.04
23 5 0.21
24 7 0.29
25 6 0.25
ACGTcount: A:0.68, C:0.00, G:0.22, T:0.10
Consensus pattern (24 bp):
AAAAAGAAAAATGAGAAAAAGTTG
Found at i:12074920 original size:62 final size:59
Alignment explanation
Indices: 12074790--12075014 Score: 193
Period size: 60 Copynumber: 3.7 Consensus size: 59
12074780 ACTTATAAGA
* * * * *
12074790 GCATTTATGTAATTATGGTATAAGGGGTATTATAGTAATTTTGGTTAATTATGGTAGGAAAA
1 GCATTT-TGTAATTATGGTAGAA-AGGCATTATAGTAATTTTGGTCAATTATGGTA-GAAAG
* * * *
12074852 ACATTTTCGTAAGTATGGTATGAAAGGCATTATAGTAATTTTGGCCAAATATGGTAGATAAG
1 GCATTTT-GTAATTATGGTA-GAAAGGCATTATAGTAATTTTGGTCAATTATGGTAGA-AAG
* * * * * * *
12074914 GTATTTTGTAATTATGCTA-AAATGGCTTTGTAGTAATTTTGATCAATTATAGTAGGAAG
1 GCATTTTGTAATTATGGTAGAAA-GGCATTATAGTAATTTTGGTCAATTATGGTAGAAAG
* *
12074973 GCATTTTTGTAATTATGGTAGGAAGAG-ATTATAATAATTTTG
1 GCA-TTTTGTAATTATGGTAGAAAG-GCATTATAGTAATTTTG
12075015 ATATTATGTC
Statistics
Matches: 130, Mismatches: 26, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
59 8 0.06
60 54 0.42
61 16 0.12
62 50 0.38
63 2 0.02
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (59 bp):
GCATTTTGTAATTATGGTAGAAAGGCATTATAGTAATTTTGGTCAATTATGGTAGAAAG
Found at i:12075269 original size:61 final size:61
Alignment explanation
Indices: 12075144--12075261 Score: 157
Period size: 60 Copynumber: 1.9 Consensus size: 61
12075134 GCATTTTTGG
* * * * *
12075144 AATTATGGTAGGAAGTGTAATATAGTAATTTTGATCAATTATGAGAGAAATGTATTTCCAT
1 AATTATGGTAGGAAGTATAATATAGTAATTTTGATCAATAATAAAAGAAAGGTATTTCCAT
* *
12075205 AATTATGGTAGGAAG-ATATTATAGTAATTTTGATCAATAATAAAAGAAGGGTTATTT
1 AATTATGGTAGGAAGTATAATATAGTAATTTTGATCAATAATAAAAGAAAGG-TATTT
12075262 TCGTAATTTA
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
60 29 0.59
61 20 0.41
ACGTcount: A:0.40, C:0.03, G:0.19, T:0.37
Consensus pattern (61 bp):
AATTATGGTAGGAAGTATAATATAGTAATTTTGATCAATAATAAAAGAAAGGTATTTCCAT
Found at i:12075276 original size:31 final size:31
Alignment explanation
Indices: 12075240--12075301 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
12075230 AATTTTGATC
12075240 AATAATAAAAGAA-GGGTTATTTTCGTAATTT
1 AATAATAAAAGAATGGG-TATTTTCGTAATTT
*
12075271 AATAATAAATGAATGGGTATTTTCGTAATTT
1 AATAATAAAAGAATGGGTATTTTCGTAATTT
12075302 CATATGAGGG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 26 0.90
32 3 0.10
ACGTcount: A:0.40, C:0.03, G:0.16, T:0.40
Consensus pattern (31 bp):
AATAATAAAAGAATGGGTATTTTCGTAATTT
Found at i:12076269 original size:16 final size:16
Alignment explanation
Indices: 12076233--12076267 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
12076223 AAAATCTTAG
*
12076233 ATTTAAATTTCATCAT
1 ATTTAAATTTAATCAT
12076249 ATTTAAATTTAATC-T
1 ATTTAAATTTAATCAT
12076264 ATTT
1 ATTT
12076268 TATAATGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.54
Consensus pattern (16 bp):
ATTTAAATTTAATCAT
Found at i:12076531 original size:13 final size:13
Alignment explanation
Indices: 12076513--12076537 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12076503 ACATATGTAT
12076513 TTTTTTTAATTTA
1 TTTTTTTAATTTA
12076526 TTTTTTTAATTT
1 TTTTTTTAATTT
12076538 TTTAAATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTTTTAATTTA
Found at i:12079126 original size:44 final size:43
Alignment explanation
Indices: 12079077--12079231 Score: 186
Period size: 43 Copynumber: 3.6 Consensus size: 43
12079067 CCTCTTACTT
** *
12079077 GAGGCTTGACAACTTTTAAAAACATAAAATGGCTCTTTTGAGCA
1 GAGGCTTGACAACTTTTAAAAATTTAAAA-GGCTCTTTTAAGCA
* * * *
12079121 GAGGCTTAACAACTTTT-AAAATTTTAAAGAGTTCTTCTAAGCA
1 GAGGCTTGACAACTTTTAAAAATTTAAAAG-GCTCTTTTAAGCA
* *
12079164 GATGCTTGACAACTTTTAAAAATTTAAAAGGCTCCTTTAAGCA
1 GAGGCTTGACAACTTTTAAAAATTTAAAAGGCTCTTTTAAGCA
*
12079207 GAGACTTGACAACTTTTGAAAAATT
1 GAGGCTTGACAACTTTT-AAAAATT
12079232 GAAATATTCT
Statistics
Matches: 93, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
42 1 0.01
43 58 0.62
44 34 0.37
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.32
Consensus pattern (43 bp):
GAGGCTTGACAACTTTTAAAAATTTAAAAGGCTCTTTTAAGCA
Found at i:12079459 original size:100 final size:100
Alignment explanation
Indices: 12079349--12079635 Score: 307
Period size: 100 Copynumber: 2.9 Consensus size: 100
12079339 AGGCCTAATA
** * * *
12079349 ACTTTAAAAATTCTCATCATGCGAAAGGTTCTTTTAAATAAAGGCTTAACGACTTAAAAATTCTC
1 ACTTTAAAAATTCTCATCATGAAAAAGGCTCATTTAAACAAAGGCTTAACGACTTAAAAATTCTC
*
12079414 ATTTTGGAAAA-GCTTTTCTAAGCAACGGCCCAACG
66 ATTTT-GAAAAGGCTTCTCTAAGCAACGGCCCAACG
* *
12079449 ACTTTAAAAATTCTCATCATGAAAAAGGCTCATTTAAGCAGAGGCTTAACGACTTAAAAATTCTC
1 ACTTTAAAAATTCTCATCATGAAAAAGGCTCATTTAAACAAAGGCTTAACGACTTAAAAATTCTC
* ***
12079514 ATTTTGAAAAGGCTTCTCTAAGTAGA-GGCTTTACG
66 ATTTTGAAAAGGCTTCTCTAAGCA-ACGGCCCAACG
* * * *
12079549 ACTTT-AAAATTCTCA-AATTGAAAAAGGCTCATCTAAGCAAAGG-TTCAACCACTTTAAAAA-T
1 ACTTTAAAAATTCTCATCA-TGAAAAAGGCTCATTTAAACAAAGGCTT-AACGAC-TTAAAAATT
* * *
12079610 CTTATCTTGAAAAATGCTTCTCTAAG
63 CTCATTTTG-AAAAGGCTTCTCTAAG
12079636 TAGAGGTTCA
Statistics
Matches: 162, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
98 3 0.02
99 51 0.31
100 107 0.66
101 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (100 bp):
ACTTTAAAAATTCTCATCATGAAAAAGGCTCATTTAAACAAAGGCTTAACGACTTAAAAATTCTC
ATTTTGAAAAGGCTTCTCTAAGCAACGGCCCAACG
Found at i:12079543 original size:49 final size:50
Alignment explanation
Indices: 12079301--12079641 Score: 243
Period size: 50 Copynumber: 6.8 Consensus size: 50
12079291 CTCAATAGTT
* * * * **
12079301 TTAAAAATTCTTATCTT-AAAAATGGC-TCTTCTAAGGATAGGCCTAATAAC
1 TTAAAAATTCTCATCTTGAAAAA-GGCTTC-TCTAAGCAGAGGCTTAACGAC
* ** * ** *
12079351 TTTAAAAATTCTCATCATGCGAAAGG-TTCTTTTAAATAAAGGCTTAACGAC
1 -TTAAAAATTCTCATCTTGAAAAAGGCTTC-TCTAAGCAGAGGCTTAACGAC
* * * **
12079402 TTAAAAATTCTCATTTTGGAAAA-GCTTTTCTAAGCA-ACGGCCCAACGAC
1 TTAAAAATTCTCATCTTGAAAAAGGCTTCTCTAAGCAGA-GGCTTAACGAC
* *
12079451 TTTAAAAATTCTCATCATGAAAAAGGC-TCATTTAAGCAGAGGCTTAACGAC
1 -TTAAAAATTCTCATCTTGAAAAAGGCTTC-TCTAAGCAGAGGCTTAACGAC
* * *
12079502 TTAAAAATTCTCATTTTG-AAAAGGCTTCTCTAAGTAGAGGCTTTACGAC
1 TTAAAAATTCTCATCTTGAAAAAGGCTTCTCTAAGCAGAGGCTTAACGAC
* ** * *
12079551 TTTAAAATTCTCAAATTGAAAAAGGC-TCATCTAAGCAAAGG-TTCAACCAC
1 TTAAAAATTCTCATCTTGAAAAAGGCTTC-TCTAAGCAGAGGCTT-AACGAC
* * *
12079601 TTTAAAAA-TCTTATCTTGAAAAATGCTTCTCTAAGTAGAGG
1 -TTAAAAATTCTCATCTTGAAAAAGGCTTCTCTAAGCAGAGG
12079642 TTCAACAATT
Statistics
Matches: 229, Mismatches: 47, Indels: 29
0.75 0.15 0.10
Matches are distributed among these distances:
48 1 0.00
49 59 0.26
50 105 0.46
51 60 0.26
52 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.31
Consensus pattern (50 bp):
TTAAAAATTCTCATCTTGAAAAAGGCTTCTCTAAGCAGAGGCTTAACGAC
Found at i:12079620 original size:99 final size:101
Alignment explanation
Indices: 12079301--12079641 Score: 295
Period size: 100 Copynumber: 3.4 Consensus size: 101
12079291 CTCAATAGTT
* * * * * **
12079301 TTAAAAATTCTTATCTT-AAAAATGGC-TCTTCTAAGGATAGGCCTAATAACTTTAAAAATTCTC
1 TTAAAAATTCTCATCTTGAAAAA-GGCTTC-TCTAAGTAGAGGCTTTACGACTTTAAAAATTCTC
* ** * * * ** *
12079364 ATCATGCGAAAGGTTCTTTTAAATAAAGGCTTAACGAC
64 ATAATGAAAAAGGCTCATCTAAGCAAAGGCTTAACCAC
* * * * ***
12079402 TTAAAAATTCTCATTTTGGAAAA-GCTTTTCTAAGCA-ACGGCCCAACGACTTTAAAAATTCTCA
1 TTAAAAATTCTCATCTTGAAAAAGGCTTCTCTAAGTAGA-GGCTTTACGACTTTAAAAATTCTCA
* * * *
12079465 TCATGAAAAAGGCTCATTTAAGCAGAGGCTTAACGAC
65 TAATGAAAAAGGCTCATCTAAGCAAAGGCTTAACCAC
*
12079502 TTAAAAATTCTCATTTTG-AAAAGGCTTCTCTAAGTAGAGGCTTTACGACTTT-AAAATTCTCA-
1 TTAAAAATTCTCATCTTGAAAAAGGCTTCTCTAAGTAGAGGCTTTACGACTTTAAAAATTCTCAT
12079564 AATTGAAAAAGGCTCATCTAAGCAAAGG-TTCAACCAC
66 AA-TGAAAAAGGCTCATCTAAGCAAAGGCTT-AACCAC
* *
12079601 TTTAAAAA-TCTTATCTTGAAAAATGCTTCTCTAAGTAGAGG
1 -TTAAAAATTCTCATCTTGAAAAAGGCTTCTCTAAGTAGAGG
12079642 TTCAACAATT
Statistics
Matches: 204, Mismatches: 27, Indels: 19
0.82 0.11 0.08
Matches are distributed among these distances:
98 3 0.01
99 51 0.25
100 129 0.63
101 17 0.08
102 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.31
Consensus pattern (101 bp):
TTAAAAATTCTCATCTTGAAAAAGGCTTCTCTAAGTAGAGGCTTTACGACTTTAAAAATTCTCAT
AATGAAAAAGGCTCATCTAAGCAAAGGCTTAACCAC
Found at i:12086252 original size:12 final size:12
Alignment explanation
Indices: 12086224--12086253 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
12086214 TTTTTTGTTA
12086224 TTTATTGATTTT
1 TTTATTGATTTT
*
12086236 GTTATTGATTTT
1 TTTATTGATTTT
12086248 TTTATT
1 TTTATT
12086254 TTTTATTTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.17, C:0.00, G:0.10, T:0.73
Consensus pattern (12 bp):
TTTATTGATTTT
Found at i:12087826 original size:25 final size:26
Alignment explanation
Indices: 12087798--12087849 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12087788 ATGAAGCACT
12087798 TATAA-AAGCATTTAC-GTAATTATGG
1 TATAAGAAGCA-TTACAGTAATTATGG
*
12087823 TATAAGAAGCATTACAGTAATTTTGG
1 TATAAGAAGCATTACAGTAATTATGG
12087849 T
1 T
12087850 TAATTATGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.37
Consensus pattern (26 bp):
TATAAGAAGCATTACAGTAATTATGG
Found at i:12088025 original size:60 final size:58
Alignment explanation
Indices: 12087813--12088030 Score: 179
Period size: 61 Copynumber: 3.6 Consensus size: 58
12087803 AAGCATTTAC
* * * * **
12087813 GTAATTATGGTATAAGAAGCATTACAGTAATTTTGGTTAATTATGGTAGGAAAAACATTTT
1 GTAATTATGGTA-GAG-AGCATTATAGTAATTTTGATCAATTATGGTAGG-AAGGCATTTT
* * * * * *
12087874 GTAAGTATGGTATGAGATGTATTATAGTAATTTTGGTCAAATATGGTAGATAAGGTATTTT
1 GTAATTATGGTA-GAGA-GCATTATAGTAATTTTGATCAATTATGGTAG-GAAGGCATTTT
* * *
12087935 GTAATTATGGTAAGATAGC-TTCGTAGTAATTTTGATCAATTATAGTAGGAAGGCATTTTT
1 GTAATTATGGT-AGAGAGCATT-ATAGTAATTTTGATCAATTATGGTAGGAAGGCA-TTTT
*
12087995 GTAATTATGGTAGGAAGAG-ATTATAATAATTTTGAT
1 GTAATTATGGTA-G-AGAGCATTATAGTAATTTTGAT
12088031 ATTATGTGAA
Statistics
Matches: 127, Mismatches: 22, Indels: 17
0.77 0.13 0.10
Matches are distributed among these distances:
59 8 0.06
60 52 0.41
61 66 0.52
62 1 0.01
ACGTcount: A:0.35, C:0.04, G:0.22, T:0.39
Consensus pattern (58 bp):
GTAATTATGGTAGAGAGCATTATAGTAATTTTGATCAATTATGGTAGGAAGGCATTTT
Found at i:12088281 original size:61 final size:60
Alignment explanation
Indices: 12088151--12088282 Score: 160
Period size: 60 Copynumber: 2.2 Consensus size: 60
12088141 ATAAGGGCAT
* * * *
12088151 TTTCATAATTATGGTAGGAAGTGTAATATAGTAATTTTGATCAATTATGAAAGAAAGGTC
1 TTTCATAATTACGGTAGGAAGTGTAATATAGTAATTTTGATCAATAATAAAAGAAAGGTA
* *
12088211 TTTCTATAATTACGGTAGG-AG-GATATTATAGTAATTTTGATCAATAATAAAATAAGAGGTA
1 TTTC-ATAATTACGGTAGGAAGTG-TAATATAGTAATTTTGATCAATAATAAAAGAA-AGGTA
12088272 TTATCATAATT
1 TT-TCATAATT
12088283 CAATAATAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
59 1 0.02
60 34 0.55
61 25 0.40
62 2 0.03
ACGTcount: A:0.39, C:0.05, G:0.17, T:0.38
Consensus pattern (60 bp):
TTTCATAATTACGGTAGGAAGTGTAATATAGTAATTTTGATCAATAATAAAAGAAAGGTA
Found at i:12088289 original size:31 final size:31
Alignment explanation
Indices: 12088251--12088313 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 31
12088241 GTAATTTTGA
12088251 TCAATAATAAAAT-AA-GAGGTATTATCATAAT
1 TCAATAAT-AAATGAATG-GGTATTATCATAAT
*
12088282 TCAATAATAAATGAATGGGTATTTTCATAAT
1 TCAATAATAAATGAATGGGTATTATCATAAT
12088313 T
1 T
12088314 ATGATATGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
30 4 0.14
31 24 0.83
32 1 0.03
ACGTcount: A:0.46, C:0.06, G:0.11, T:0.37
Consensus pattern (31 bp):
TCAATAATAAATGAATGGGTATTATCATAAT
Found at i:12090983 original size:13 final size:14
Alignment explanation
Indices: 12090958--12090986 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
12090948 TCAAAATGAT
12090958 AAAAATAATATTAA
1 AAAAATAATATTAA
12090972 AAAAATAA-ATTAA
1 AAAAATAATATTAA
12090985 AA
1 AA
12090987 TATTAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (14 bp):
AAAAATAATATTAA
Found at i:12092277 original size:43 final size:44
Alignment explanation
Indices: 12092186--12092293 Score: 123
Period size: 43 Copynumber: 2.5 Consensus size: 44
12092176 TAGAGGCTTG
* **
12092186 ACAACTTTTAAAAATATAAAATGGCTCTTCTGAACAGAGGTTCA
1 ACAACTTTTAAAAATTTAAAATGGCTCTTCTGAACAGAGCCTCA
* *
12092230 ACAACTTTTAAAAATTTAAAA-GG-TTTCTCTGAGCAGATGCCT-A
1 ACAACTTTTAAAAATTTAAAATGGCTCT-TCTGAACAGA-GCCTCA
*
12092273 ACAACTTTTGAAAATTTAAAA
1 ACAACTTTTAAAAATTTAAAA
12092294 AACTCTTTTA
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
42 2 0.04
43 32 0.57
44 22 0.39
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31
Consensus pattern (44 bp):
ACAACTTTTAAAAATTTAAAATGGCTCTTCTGAACAGAGCCTCA
Found at i:12092459 original size:51 final size:50
Alignment explanation
Indices: 12092404--12092821 Score: 343
Period size: 51 Copynumber: 8.3 Consensus size: 50
12092394 CAACAATTTA
* * * *
12092404 AAAAATTTTTATCTTGAAAAAGGCTCCTCTAAGAAGAGGCCTAATGACTTT
1 AAAAATTCTCATCTTG-AAAAGGCTCCTCTAAGAAGAGGCTTAACGACTTT
* * *
12092455 AAAAATTCTCATCATATG-AAAGGCTCCTTTAA-ACAGATGCTTAACAAC-TT
1 AAAAATTCTCATC-T-TGAAAAGGCTCCTCTAAGA-AGAGGCTTAACGACTTT
** *
12092505 AAAAATTCTCAAT-TTGAAAAGGCTTTTCTAAGCAA-AGGCCTAACGACTTT
1 AAAAATTCTC-ATCTTGAAAAGGCTCCTCTAAG-AAGAGGCTTAACGACTTT
* * * * * * *
12092555 AAAAATTCTCATAATGGAAAATGCTCATTTAAGTAGAGACTTAACGA-TTT
1 AAAAATTCTCAT-CTTGAAAAGGCTCCTCTAAGAAGAGGCTTAACGACTTT
* * *
12092605 AAAAATTCTCATTTTGAAAAGGCTCATCTAA-ATAGAGGCTTAACAACTTT
1 AAAAATTCTCATCTTGAAAAGGCTCCTCTAAGA-AGAGGCTTAACGACTTT
* * * * * *
12092655 AAAAATTTTTATTTTGAAAAAGGCTCATCTAAGCAGAGG-TTGAACCACTTT
1 AAAAATTCTCATCTTG-AAAAGGCTCCTCTAAGAAGAGGCTT-AACGACTTT
* * *
12092706 AAAAA-TCTCATCTTGAAAAGAGCTCCTCTAAGTAGAGGCTCAACGATTTT
1 AAAAATTCTCATCTTGAAAAG-GCTCCTCTAAGAAGAGGCTTAACGACTTT
* * * * *
12092756 AAAAATTCTTATATTGAAAAAGGCTTCTTTAAGAAGAGGCTTAATGACTTT
1 AAAAATTCTCATCTTG-AAAAGGCTCCTCTAAGAAGAGGCTTAACGACTTT
12092807 -AAAATTCTTCATCTT
1 AAAAATTC-TCATCTT
12092822 TTCTCGAAAT
Statistics
Matches: 296, Mismatches: 50, Indels: 42
0.76 0.13 0.11
Matches are distributed among these distances:
48 2 0.01
49 54 0.18
50 102 0.34
51 130 0.44
52 6 0.02
53 2 0.01
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.32
Consensus pattern (50 bp):
AAAAATTCTCATCTTGAAAAGGCTCCTCTAAGAAGAGGCTTAACGACTTT
Found at i:12092512 original size:50 final size:51
Alignment explanation
Indices: 12092450--12092814 Score: 247
Period size: 50 Copynumber: 7.3 Consensus size: 51
12092440 AGGCCTAATG
* *
12092450 ACTTTAAAAATTCTCATCATATG-AAAGGCTCCTTTAAACAGATGCTTAACA
1 ACTTTAAAAATTCTCAT-ATATGAAAAGGCTCATTTAAACAGAGGCTTAACA
* * * * * *
12092501 AC-TTAAAAATTCTCA-ATTTGAAAAGGCT-TTTCTAAGCAAAGGCCTAACG
1 ACTTTAAAAATTCTCATATATGAAAAGGCTCATT-TAAACAGAGGCTTAACA
* ** * *
12092550 ACTTTAAAAATTCTCATA-ATGGAAAATGCTCATTTAAGTAGAGACTTAACG
1 ACTTTAAAAATTCTCATATAT-GAAAAGGCTCATTTAAACAGAGGCTTAACA
* * *
12092601 A-TTTAAAAATTCTCAT-TTTGAAAAGGCTCATCTAAATAGAGGCTTAACA
1 ACTTTAAAAATTCTCATATATGAAAAGGCTCATTTAAACAGAGGCTTAACA
* * * * * *
12092650 ACTTTAAAAATTTTTAT-TTTGAAAAAGGCTCATCTAAGCAGAGG-TTGAACC
1 ACTTTAAAAATTCTCATATATG-AAAAGGCTCATTTAAACAGAGGCTT-AACA
* * * ** * *
12092701 ACTTTAAAAA-TCTCATCT-TGAAAAGAGCTCCTCTAAGTAGAGGCTCAACG
1 ACTTTAAAAATTCTCATATATGAAAAG-GCTCATTTAAACAGAGGCTTAACA
* * **
12092751 ATTTTAAAAATTCTTATAT-TGAAAAAGGCTTC-TTTAAGA-AGAGGCTTAATG
1 ACTTTAAAAATTCTCATATATG-AAAAGGC-TCATTTAA-ACAGAGGCTTAACA
12092802 ACTTT-AAAATTCT
1 ACTTTAAAAATTCT
12092815 TCATCTTTTC
Statistics
Matches: 258, Mismatches: 39, Indels: 35
0.78 0.12 0.11
Matches are distributed among these distances:
48 6 0.02
49 52 0.20
50 103 0.40
51 88 0.34
52 9 0.03
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (51 bp):
ACTTTAAAAATTCTCATATATGAAAAGGCTCATTTAAACAGAGGCTTAACA
Found at i:12092545 original size:100 final size:100
Alignment explanation
Indices: 12092421--12092814 Score: 324
Period size: 100 Copynumber: 3.9 Consensus size: 100
12092411 TTTATCTTGA
* *
12092421 AAAAGGCTCCTCTAAGAAGAGGCCTAATGACTTTAAAAATTCTCATCATAT-G-AAAGGCTCCTT
1 AAAAGGCTCCTCTAAGAAGAGGCCTAACGACTTTAAAAATTCTCAT-A-ATGGAAAAGGCTCATT
12092484 TAAACAGATG-CTTAACAACTTAAAAATTCTCAATTTG
64 TAAACAGA-GACTTAACAACTTAAAAATTCTCAATTTG
** *
12092521 AAAAGGCTTTTCTAAGCAA-AGGCCTAACGACTTTAAAAATTCTCATAATGGAAAATGCTCATTT
1 AAAAGGCTCCTCTAAG-AAGAGGCCTAACGACTTTAAAAATTCTCATAATGGAAAAGGCTCATTT
** * * *
12092585 AAGTAGAGACTTAACGATTTAAAAATTCTCATTTTG
65 AAACAGAGACTTAACAACTTAAAAATTCTCAATTTG
* * * * * ** * *
12092621 AAAAGGCTCATCTAA-ATAGAGGCTTAACAACTTTAAAAATTTTTATTTTGAAAAAGGCTCATCT
1 AAAAGGCTCCTCTAAGA-AGAGGCCTAACGACTTTAAAAATTCTCATAATGGAAAAGGCTCATTT
* * *
12092685 AAGCAGAG-GTTGAACCACTTTAAAAA-TCTC-ATCTTG
65 AAACAGAGACTT-AACAAC-TTAAAAATTCTCAAT-TTG
* * * * *
12092721 AAAAGAGCTCCTCTAAGTAGAGG-CTCAACGATTTTAAAAATTCTTATATTGAAAAAGGCTTC-T
1 AAAAG-GCTCCTCTAAGAAGAGGCCT-AACGACTTTAAAAATTCTCATAATGGAAAAGGC-TCAT
* ** *
12092784 TTAAGA-AGAGGCTTAATGACTTTAAAATTCT
63 TTAA-ACAGAGACTTAACAACTTAAAAATTCT
12092815 TCATCTTTTC
Statistics
Matches: 239, Mismatches: 39, Indels: 31
0.77 0.13 0.10
Matches are distributed among these distances:
98 3 0.01
99 7 0.03
100 158 0.66
101 67 0.28
102 4 0.02
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (100 bp):
AAAAGGCTCCTCTAAGAAGAGGCCTAACGACTTTAAAAATTCTCATAATGGAAAAGGCTCATTTA
AACAGAGACTTAACAACTTAAAAATTCTCAATTTG
Found at i:12095197 original size:21 final size:20
Alignment explanation
Indices: 12095163--12095206 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
12095153 AGACTCCGTT
*
12095163 AGAATAAATTAAAAACAATCA
1 AGAATAAATCAAAAA-AATCA
* *
12095184 AGAATCAATCAAAAATATCA
1 AGAATAAATCAAAAAAATCA
12095204 AGA
1 AGA
12095207 GAGAAAGAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.64, C:0.11, G:0.07, T:0.18
Consensus pattern (20 bp):
AGAATAAATCAAAAAAATCA
Found at i:12099485 original size:103 final size:104
Alignment explanation
Indices: 12099378--12099635 Score: 255
Period size: 103 Copynumber: 2.6 Consensus size: 104
12099368 AAATTTTATT
* * * * * * *
12099378 TTAATCCTGCCAAATTATTGGAGGATTTAAATCTTAAAATTAAATTTTATCAAATTATTGAAAGA
1 TTAATCCTACCAAACTATTAGAGGATTTAAATCTTAAAATTAAATCTTACCAAACTATTAAAAGA
*
12099443 TTTAATGATCTTTT-ATAAAGAAAATAAAATTTTTGAGA
66 TTTAATGATCTTTTAAAAAAGAAAATAAAATTTTTGAGA
* * * * *
12099481 TTAATCCTATCAAACTATTAGAGGTTTTGAATTTTAAAATTAAATCTTACCAAACTATTAAAAGG
1 TTAATCCTACCAAACTATTAGAGGATTTAAATCTTAAAATTAAATCTTACCAAACTATTAAAAGA
* *
12099546 TTTTATGATCTTTTAAAAAAG---A-AACA-TTTTGA-A
66 TTTAATGATCTTTTAAAAAAGAAAATAAAATTTTTGAGA
* * * * * * *
12099579 TTAATCTTACTAAACTATTAGAAGA--TATATCTCAAAATAAAATTTTACCAAACTATT
1 TTAATCCTACCAAACTATTAGAGGATTTAAATCTTAAAATTAAATCTTACCAAACTATT
12099636 TGAAGGCTTT
Statistics
Matches: 128, Mismatches: 26, Indels: 9
0.79 0.16 0.06
Matches are distributed among these distances:
96 26 0.20
98 21 0.16
99 6 0.05
100 3 0.02
101 1 0.01
103 66 0.52
104 5 0.04
ACGTcount: A:0.43, C:0.10, G:0.09, T:0.39
Consensus pattern (104 bp):
TTAATCCTACCAAACTATTAGAGGATTTAAATCTTAAAATTAAATCTTACCAAACTATTAAAAGA
TTTAATGATCTTTTAAAAAAGAAAATAAAATTTTTGAGA
Found at i:12103449 original size:19 final size:19
Alignment explanation
Indices: 12103425--12103487 Score: 51
Period size: 19 Copynumber: 3.3 Consensus size: 19
12103415 TTGCCAACTC
12103425 TTTTTTTTTTTTGCTTTTA
1 TTTTTTTTTTTTGCTTTTA
** *
12103444 TTTTTTCATTTT-CATTTTT
1 TTTTTTTTTTTTGC-TTTTA
12103463 TTTTTTATTTATTTG--TTTA
1 TTTTTT-TTT-TTTGCTTTTA
12103482 TTTTTT
1 TTTTTT
12103488 ATTTACATAA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
18 1 0.03
19 29 0.85
20 1 0.03
21 3 0.09
ACGTcount: A:0.10, C:0.05, G:0.03, T:0.83
Consensus pattern (19 bp):
TTTTTTTTTTTTGCTTTTA
Found at i:12103474 original size:30 final size:31
Alignment explanation
Indices: 12103426--12103485 Score: 79
Period size: 30 Copynumber: 1.9 Consensus size: 31
12103416 TGCCAACTCT
*
12103426 TTTTTTTTTTTGCTTTTATTT-TTTCATTTTCA
1 TTTTTTTTTTT-CATTTATTTGTTT-ATTTTCA
12103458 TTTTTTTTTTT-ATTTATTTGTTTATTTT
1 TTTTTTTTTTTCATTTATTTGTTTATTTT
12103486 TTATTTACAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 12 0.46
31 3 0.12
32 11 0.42
ACGTcount: A:0.10, C:0.05, G:0.03, T:0.82
Consensus pattern (31 bp):
TTTTTTTTTTTCATTTATTTGTTTATTTTCA
Found at i:12104528 original size:20 final size:19
Alignment explanation
Indices: 12104503--12104546 Score: 79
Period size: 20 Copynumber: 2.3 Consensus size: 19
12104493 GAATTTTATA
12104503 TTTATATTTAAAAATAATAT
1 TTTATATTTAAAAA-AATAT
12104523 TTTATATTTAAAAAAATAT
1 TTTATATTTAAAAAAATAT
12104542 TTTAT
1 TTTAT
12104547 TAATTTTGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 10 0.42
20 14 0.58
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (19 bp):
TTTATATTTAAAAAAATAT
Found at i:12105598 original size:18 final size:18
Alignment explanation
Indices: 12105575--12105610 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
12105565 AGGAAAAAGA
12105575 AAAGCAATATTGGTGTAT
1 AAAGCAATATTGGTGTAT
12105593 AAAGCAATATTGGTGTAT
1 AAAGCAATATTGGTGTAT
12105611 TTTCCTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.22, T:0.33
Consensus pattern (18 bp):
AAAGCAATATTGGTGTAT
Found at i:12105904 original size:29 final size:30
Alignment explanation
Indices: 12105838--12105933 Score: 110
Period size: 29 Copynumber: 3.2 Consensus size: 30
12105828 TCTTAAGGGT
*
12105838 TTATTTAGG-TATAAATTAAAAGTTTAAAAAA
1 TTATTT-GGATATAAATTAAAAG-TTAAAAAC
*
12105869 TTTTTTGGATATAAATT-AAAGTTAAAAAC
1 TTATTTGGATATAAATTAAAAGTTAAAAAC
*
12105898 TTATTT-GA-ATCAAATTAAAAATTAAAAAC
1 TTATTTGGATAT-AAATTAAAAGTTAAAAAC
12105927 TTATTTG
1 TTATTTG
12105934 AATGTAATAA
Statistics
Matches: 57, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
27 2 0.04
28 7 0.12
29 29 0.51
30 6 0.11
31 13 0.23
ACGTcount: A:0.48, C:0.03, G:0.08, T:0.41
Consensus pattern (30 bp):
TTATTTGGATATAAATTAAAAGTTAAAAAC
Found at i:12105934 original size:29 final size:28
Alignment explanation
Indices: 12105848--12105968 Score: 111
Period size: 29 Copynumber: 4.2 Consensus size: 28
12105838 TTATTTAGGT
* * *
12105848 ATAAATTAAAAGTTTAAAAAATTTTTTGGA
1 ATAAATTAAAA-ATTAAAAACTTATTT-GA
*
12105878 TATAAATT-AAAGTTAAAAACTTATTTGA
1 -ATAAATTAAAAATTAAAAACTTATTTGA
12105906 ATCAAATTAAAAATTAAAAACTTATTTGA
1 AT-AAATTAAAAATTAAAAACTTATTTGA
* * *
12105935 ATGTAA-TAAAAATATAAAAACTAATTTAA
1 AT-AAATTAAAAAT-TAAAAACTTATTTGA
12105964 ATAAA
1 ATAAA
12105969 CTTATAAAGT
Statistics
Matches: 78, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 16 0.21
29 50 0.64
30 3 0.04
31 7 0.09
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (28 bp):
ATAAATTAAAAATTAAAAACTTATTTGA
Found at i:12108507 original size:61 final size:61
Alignment explanation
Indices: 12108374--12108507 Score: 155
Period size: 60 Copynumber: 2.2 Consensus size: 61
12108364 TCATAAGGGC
* * *
12108374 ATTTTTGTAATTATGGTAGGAAGTGTAATATAGTAATTTTGATCAATTATGAGAGAAAAGT
1 ATTTTTGTAATTATGGTAGGAAGTGTAATATAGTAATTTTGATCAATAATAAAAGAAAAGT
* * * * **
12108435 CTTTCTATAATTATGGTAGG-AG-GATATTATAGTAATTTTGATCAATAATAAAAGAAGGGGT
1 ATTTTTGTAATTATGGTAGGAAGTG-TAATATAGTAATTTTGATCAATAATAAAAGAA-AAGT
12108496 ATTTTTGTAATT
1 ATTTTTGTAATT
12108508 CAATAAAAAA
Statistics
Matches: 59, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
59 1 0.02
60 30 0.51
61 28 0.47
ACGTcount: A:0.37, C:0.03, G:0.20, T:0.40
Consensus pattern (61 bp):
ATTTTTGTAATTATGGTAGGAAGTGTAATATAGTAATTTTGATCAATAATAAAAGAAAAGT
Found at i:12108511 original size:31 final size:31
Alignment explanation
Indices: 12108476--12108538 Score: 101
Period size: 31 Copynumber: 2.0 Consensus size: 31
12108466 GTAATTTTGA
12108476 TCAATAATAAAA-GAAGGGGTATTTTTGTAAT
1 TCAATAA-AAAATGAAGGGGTATTTTTGTAAT
*
12108507 TCAATAAAAAATGAATGGGTATTTTTGTAAT
1 TCAATAAAAAATGAAGGGGTATTTTTGTAAT
12108538 T
1 T
12108539 ATGATATGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 4 0.13
31 26 0.87
ACGTcount: A:0.41, C:0.03, G:0.17, T:0.38
Consensus pattern (31 bp):
TCAATAAAAAATGAAGGGGTATTTTTGTAAT
Found at i:12110231 original size:16 final size:15
Alignment explanation
Indices: 12110201--12110236 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
12110191 TTTTTAATTA
12110201 TTATTTTATTATTTT
1 TTATTTTATTATTTT
*
12110216 TTATTGTTATTCTTTT
1 TTATT-TTATTATTTT
12110232 TTATT
1 TTATT
12110237 CGAGAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.78
Consensus pattern (15 bp):
TTATTTTATTATTTT
Found at i:12110483 original size:17 final size:16
Alignment explanation
Indices: 12110461--12110493 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
12110451 TTTGAAAAAA
12110461 AATTTATTAGTTTTTTT
1 AATTTATTA-TTTTTTT
12110478 AATTTATTATTTTTTT
1 AATTTATTATTTTTTT
12110494 GAAGGAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (16 bp):
AATTTATTATTTTTTT
Found at i:12112377 original size:43 final size:44
Alignment explanation
Indices: 12112329--12112412 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
12112319 AGATCAAATC
* * *
12112329 AAAATG-CTCCTCTTACTAGAGGCTCGACAACTTTCAAAAACAT
1 AAAATGACTCCTCTAAATAGAGGCTCAACAACTTTCAAAAACAT
* *
12112372 AAAATGACTCTTCTAAATAGAGGCTCAACAACTTTTAAAAA
1 AAAATGACTCCTCTAAATAGAGGCTCAACAACTTTCAAAAA
12112413 TTTAAAAGGC
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
43 6 0.17
44 29 0.83
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26
Consensus pattern (44 bp):
AAAATGACTCCTCTAAATAGAGGCTCAACAACTTTCAAAAACAT
Found at i:12112487 original size:42 final size:43
Alignment explanation
Indices: 12112346--12112497 Score: 114
Period size: 42 Copynumber: 3.5 Consensus size: 43
12112336 TCCTCTTACT
* * ** *
12112346 AGAGGCTCGACAACTTTCAAAAACATAAAATGACTCT-TCTAA-A
1 AGAGACTCGACAACTTTTAAAAATTTAAAA-GGCT-TATCTAAGA
* * *
12112389 TAGAGGCTCAACAACTTTTAAAAATTTAAAAGGCTTCTCTAAGA
1 -AGAGACTCGACAACTTTTAAAAATTTAAAAGGCTTATCTAAGA
* * * **
12112433 AGATGCCT-GACAACTTTT-AAAATTTATAAGGCTTATTTAATC
1 AGA-GACTCGACAACTTTTAAAAATTTAAAAGGCTTATCTAAGA
*
12112475 AGAGACTCGACAACTTTTGAAAA
1 AGAGACTCGACAACTTTTAAAAA
12112498 CTTGAAATAT
Statistics
Matches: 90, Mismatches: 13, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
41 3 0.03
42 33 0.37
43 24 0.27
44 30 0.33
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.29
Consensus pattern (43 bp):
AGAGACTCGACAACTTTTAAAAATTTAAAAGGCTTATCTAAGA
Found at i:12112720 original size:100 final size:101
Alignment explanation
Indices: 12112570--12112988 Score: 291
Period size: 100 Copynumber: 4.2 Consensus size: 101
12112560 CCCAACCATT
* * * ** *
12112570 TTAAAAATTTTTATCTTGAAAAAGCTCCTCTAAGAAAAGGCCTAACGACTTTAAAAATTCTCATC
1 TTAAAAATTTTCATCTTTAAAAGGCTTTTCTAAGAAAAGGCCTAACGACTTTAAAAATTCTCATA
** ** *
12112635 ATGC-AAAACGCTTTTTTAAATAGATTCTTAATGAC
66 ATGCAAAAACGCTCATTTAAATAGAGGCTTAACGAC
* * * * *
12112670 TTAAAAGTTTTCATCTTTAAAAGGCTTTTCTAAGCAAAGGCCCAATGACTTTAAAAATTCT-AAA
1 TTAAAAATTTTCATCTTTAAAAGGCTTTTCTAAGAAAAGGCCTAACGACTTTAAAAATTCTCATA
* *
12112734 ATGCAAAAAGGCTCATTTAAGTAGAGGCTTAACGAC
66 ATGCAAAAACGCTCATTTAAATAGAGGCTTAACGAC
* * * *
12112770 TTAAAAATTCTCAT-TTTGAAAAGG-TTTCTCTAAGTAGAGGCTTAACGACTTTAAAAATTCTCA
1 TTAAAAATTTTCATCTTT-AAAAGGCTTT-TCTAAGAAAAGGCCTAACGACTTTAAAAATTCTCA
** * * * *
12112833 T-ATTAAAAAAGGCTCATTTGAGTAGAGG-TTCAACCAC
64 TAATGCAAAAACGCTCATTTAAATAGAGGCTT-AACGAC
* * ** * * * * * *
12112870 TTTAAAAATCTT-ATCTTGAAAAAGGC-CCTCTAAGTAGA-GACTCAACAATTTTAAAAATTCCC
1 -TTAAAAATTTTCATCTT-TAAAAGGCTTTTCTAAGAAAAGGCCT-AACGACTTTAAAAATTCTC
** * ** * *
12112932 AT-ATTAAAAAAGGCTTTTTTAAGTAGAGGCTTAACAAC
63 ATAATGCAAAAACGCTCATTTAAATAGAGGCTTAACGAC
*
12112970 TTTAAAATTCTTCATCTTT
1 TTAAAAATT-TTCATCTTT
12112989 TCTTAAAATC
Statistics
Matches: 259, Mismatches: 47, Indels: 26
0.78 0.14 0.08
Matches are distributed among these distances:
99 22 0.08
100 212 0.82
101 25 0.10
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.33
Consensus pattern (101 bp):
TTAAAAATTTTCATCTTTAAAAGGCTTTTCTAAGAAAAGGCCTAACGACTTTAAAAATTCTCATA
ATGCAAAAACGCTCATTTAAATAGAGGCTTAACGAC
Found at i:12112804 original size:49 final size:49
Alignment explanation
Indices: 12112720--12112980 Score: 213
Period size: 50 Copynumber: 5.2 Consensus size: 49
12112710 CCCAATGACT
* * ** * *
12112720 TTAAAAATTCTAAAATGCAAAAAGGCTCATTTAAGTAGAGGCTTAACGAC
1 TTAAAAATTCTCATATTAAAAAAGGCTC-TCTAAGTAGAGGCTTAACAAC
** * *
12112770 TTAAAAATTCTCAT-TTTGAAAAGGTTTCTCTAAGTAGAGGCTTAACGAC
1 TTAAAAATTCTCATATTAAAAAAGG-CTCTCTAAGTAGAGGCTTAACAAC
* * *
12112819 TTTAAAAATTCTCATATTAAAAAAGGCTCATTTGAGTAGAGG-TTCAACCAC
1 -TTAAAAATTCTCATATTAAAAAAGGCTC-TCTAAGTAGAGGCTT-AACAAC
* * * * * * *
12112870 TTTAAAAA-TCTTATCTTGAAAAAGGCCCTCTAAGTAGAGACTCAACAATT
1 -TTAAAAATTCTCATATTAAAAAAGGCTCTCTAAGTAGAGGCTTAACAA-C
* * *
12112920 TTAAAAATTCCCATATTAAAAAAGGCTTTTTTAAGTAGAGGCTTAACAAC
1 TTAAAAATTCTCATATTAAAAAAGGC-TCTCTAAGTAGAGGCTTAACAAC
*
12112970 TTTAAAATTCT
1 TTAAAAATTCT
12112981 TCATCTTTTC
Statistics
Matches: 167, Mismatches: 35, Indels: 18
0.76 0.16 0.08
Matches are distributed among these distances:
49 47 0.28
50 72 0.43
51 48 0.29
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.32
Consensus pattern (49 bp):
TTAAAAATTCTCATATTAAAAAAGGCTCTCTAAGTAGAGGCTTAACAAC
Found at i:12116094 original size:99 final size:90
Alignment explanation
Indices: 12115927--12116098 Score: 218
Period size: 99 Copynumber: 1.8 Consensus size: 90
12115917 AAATTCTTTA
* * **
12115927 AATTATAATTTACCAACTATTGGAGAATTTCATATGAATTTTAAAAATAATTTTTCATTCATGTC
1 AATTATAATTTACCAAATATTGGAGAATTTCATATGAATTTTAAAAATAATTTTTCAATCATACC
12115992 AAATGATTAGAGTATTTAAATATCG
66 AAATGATTAGAGTATTTAAATATCG
12116017 AATTATGAATTCTACCAAATGATTGGAGAATTTCATAATGAATTTTAAAGAAAAAATAATTTTTC
1 AATTAT-AATT-TACCAAAT-ATTGGAGAATTTCAT-ATGAATTTT-----AAAAATAATTTTTC
*
12116082 AATCCTACCAAATGATT
57 AATCATACCAAATGATT
12116099 GGAGAATTCA
Statistics
Matches: 68, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
90 6 0.09
91 4 0.06
92 7 0.10
93 15 0.22
94 9 0.13
99 27 0.40
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (90 bp):
AATTATAATTTACCAAATATTGGAGAATTTCATATGAATTTTAAAAATAATTTTTCAATCATACC
AAATGATTAGAGTATTTAAATATCG
Found at i:12121495 original size:2 final size:2
Alignment explanation
Indices: 12121488--12121521 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
12121478 AAGTTTGAAA
12121488 AG AG AG AG -G AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
12121522 AAGATAAGGA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:12123348 original size:46 final size:46
Alignment explanation
Indices: 12123295--12123387 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
12123285 TATCTTAAGT
12123295 TATATAACTCCAAATCATAATCTATTTAAAAATTTAGAAAGTATAC
1 TATATAACTCCAAATCATAATCTATTTAAAAATTTAGAAAGTATAC
12123341 TATATAACTCCAAATCATAATCTATTTAAAAATTTAGAAAGTATAC
1 TATATAACTCCAAATCATAATCTATTTAAAAATTTAGAAAGTATAC
12123387 T
1 T
12123388 TAAGGAGCTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.47, C:0.13, G:0.04, T:0.35
Consensus pattern (46 bp):
TATATAACTCCAAATCATAATCTATTTAAAAATTTAGAAAGTATAC
Found at i:12125482 original size:28 final size:29
Alignment explanation
Indices: 12125430--12125514 Score: 93
Period size: 30 Copynumber: 2.9 Consensus size: 29
12125420 TATTTAGGTA
* *
12125430 TAAATTAAAAGCTTAAAAATTTATTTGGA-
1 TAAAGTAAAAG-TTAAAAACTTATTTGGAT
12125459 TATAAGT-AAAGTTAAAAACTTATTTGGAT
1 TA-AAGTAAAAGTTAAAAACTTATTTGGAT
* *
12125488 TCAAATTAAAAATTAAAAACTTATTTG
1 T-AAAGTAAAAGTTAAAAACTTATTTG
12125515 AATGTAATAA
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
28 16 0.33
29 10 0.21
30 22 0.46
ACGTcount: A:0.48, C:0.05, G:0.09, T:0.38
Consensus pattern (29 bp):
TAAAGTAAAAGTTAAAAACTTATTTGGAT
Found at i:12125506 original size:30 final size:28
Alignment explanation
Indices: 12125419--12125542 Score: 99
Period size: 29 Copynumber: 4.2 Consensus size: 28
12125409 TATTAATGGT
* *
12125419 TTATTTAGGTATAAATTAAAAGCTTAAAAAT
1 TTATTT-GG-ATAAATTAAAA-ATTAAAAAC
* *
12125450 TTATTTGGATATAAGT-AAAGTTAAAAAC
1 TTATTTGGATA-AATTAAAAATTAAAAAC
12125478 TTATTTGGATTCAAATTAAAAATTAAAAAC
1 TTATTTGGA-T-AAATTAAAAATTAAAAAC
* *
12125508 TTATTTGAATGTAA-TAAAAATATAAAAAC
1 TTATTTGGAT-AAATTAAAAAT-TAAAAAC
*
12125537 TAATTT
1 TTATTT
12125543 AAATAAAGTT
Statistics
Matches: 79, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
28 23 0.29
29 25 0.32
30 25 0.32
31 6 0.08
ACGTcount: A:0.49, C:0.04, G:0.09, T:0.38
Consensus pattern (28 bp):
TTATTTGGATAAATTAAAAATTAAAAAC
Found at i:12125533 original size:29 final size:29
Alignment explanation
Indices: 12125430--12125542 Score: 90
Period size: 30 Copynumber: 3.9 Consensus size: 29
12125420 TATTTAGGTA
* * *
12125430 TAAATTAAAAGCTTAAAAATTTATTTGGA-
1 TAAATTAAAA-ATTAAAAACTTATTTGAAT
* * *
12125459 TATAAGT-AAAGTTAAAAACTTATTTGGAT
1 TA-AATTAAAAATTAAAAACTTATTTGAAT
12125488 TCAAATTAAAAATTAAAAACTTATTTGAAT
1 T-AAATTAAAAATTAAAAACTTATTTGAAT
*
12125518 GT-AA-TAAAAATATAAAAACTAATTT
1 -TAAATTAAAAAT-TAAAAACTTATTT
12125543 AAATAAAGTT
Statistics
Matches: 71, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
28 23 0.32
29 23 0.32
30 24 0.34
31 1 0.01
ACGTcount: A:0.51, C:0.04, G:0.08, T:0.36
Consensus pattern (29 bp):
TAAATTAAAAATTAAAAACTTATTTGAAT
Found at i:12133811 original size:30 final size:31
Alignment explanation
Indices: 12133757--12133818 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
12133747 GTAATTTTGA
12133757 TCAATAATAAAAGAATGAGTATTTTCGTAAT
1 TCAATAATAAAAGAATGAGTATTTTCGTAAT
** *
12133788 TCAATAATAAGTGAATG-GTATTTTTGTAAT
1 TCAATAATAAAAGAATGAGTATTTTCGTAAT
12133818 T
1 T
12133819 ATGATATAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 13 0.46
31 15 0.54
ACGTcount: A:0.40, C:0.05, G:0.15, T:0.40
Consensus pattern (31 bp):
TCAATAATAAAAGAATGAGTATTTTCGTAAT
Found at i:12144456 original size:21 final size:21
Alignment explanation
Indices: 12144406--12144460 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
12144396 ATTCCTTTAA
12144406 GAGGGGATCGATCCCTTACCT
1 GAGGGGATCGATCCCTTACCT
* * **
12144427 TAGGTGATCGAT-CCTCTATGT
1 GAGGGGATCGATCCCT-TACCT
12144448 GAGGGGATCGATC
1 GAGGGGATCGATC
12144461 TTTTTTCTGG
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
20 3 0.12
21 23 0.88
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (21 bp):
GAGGGGATCGATCCCTTACCT
Found at i:12146140 original size:14 final size:14
Alignment explanation
Indices: 12146121--12146166 Score: 53
Period size: 13 Copynumber: 3.4 Consensus size: 14
12146111 AAATGTAAAC
12146121 TTTATTTTTCATTA
1 TTTATTTTTCATTA
12146135 TTTA-TTTT-ATTTA
1 TTTATTTTTCA-TTA
12146148 TTTATATTTTCATT-
1 TTTAT-TTTTCATTA
12146162 TTTAT
1 TTTAT
12146167 CATTATTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
12 1 0.04
13 11 0.39
14 9 0.32
15 6 0.21
16 1 0.04
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTATTTTTCATTA
Found at i:12146176 original size:27 final size:27
Alignment explanation
Indices: 12146121--12146173 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
12146111 AAATGTAAAC
*
12146121 TTTATTTTTCATTATTTATTTTATTTA
1 TTTATTTTTCATTATTTATATTATTTA
12146148 TTTATATTTTCATT-TTTATCATTATT
1 TTTAT-TTTTCATTATTTAT-ATTATT
12146174 ATTATTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.72
Consensus pattern (27 bp):
TTTATTTTTCATTATTTATATTATTTA
Found at i:12147103 original size:3 final size:3
Alignment explanation
Indices: 12147097--12147133 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
12147087 TTCTTTATCT
* *
12147097 TTA TTA TTA TTA GTA TTA ATA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
12147134 ACTTAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:12147760 original size:51 final size:51
Alignment explanation
Indices: 12147705--12148301 Score: 588
Period size: 51 Copynumber: 11.8 Consensus size: 51
12147695 GCTCAACAGT
* * * ***
12147705 TTTAAAAATTTTTATCTTGAAAAAGGCT-TCTCTAAGAAGAGGCCCAACAAC
1 TTTAAAAATTCTCATCTTGAAAAAGGCTCT-TCTAAGTAGAGGTTTAACAAC
* * ** * * ** * ***
12147756 TTTAAAAATTTTCATCATGCGAAAGGCTCCTATAAACAAATACTTAACAAC
1 TTTAAAAATTCTCATCTTGAAAAAGGCTCTTCTAAGTAGAGGTTTAACAAC
* * * ** *
12147807 -TTAAAAATTCTCATCTTGAAAAA-GCTTTTCTAAGCA-AAGTCCCAACGAC
1 TTTAAAAATTCTCATCTTGAAAAAGGCTCTTCTAAGTAGAGGT-TTAACAAC
* * * * * *
12147856 TTTAAAAATTCTCAT-TAGAGAAAAGGCTCTTTTAAGCAAAGGCTTAACGAC
1 TTTAAAAATTCTCATCTTGA-AAAAGGCTCTTCTAAGTAGAGGTTTAACAAC
* *
12147907 -TTAAAAATTCTCATTTTG-AAAAGGCTCTTCTAAGTAAAGGTTTAACAAC
1 TTTAAAAATTCTCATCTTGAAAAAGGCTCTTCTAAGTAGAGGTTTAACAAC
* * *
12147956 TTTAAAAATTCTCATGTTGAAAAAGGCCCTTCTAAGTAGAGGTTTAACAAA
1 TTTAAAAATTCTCATCTTGAAAAAGGCTCTTCTAAGTAGAGGTTTAACAAC
* * * *
12148007 TTTAAAAATTCTCATATTGAAAAAAGGCTCATCTAAGTAGAGGTTCAACCAC
1 TTTAAAAATTCTCATCTTG-AAAAAGGCTCTTCTAAGTAGAGGTTTAACAAC
*
12148059 TTTAAAAA-TCTCATCTTGAGAAAGGCTAC-TCTAAGTAGAGGTTTAACAAC
1 TTTAAAAATTCTCATCTTGAAAAAGGCT-CTTCTAAGTAGAGGTTTAACAAC
* * *
12148109 TTTAAAAATTCTCATGTTGAAAAAGGCTCTTCTAAGTAGAGGTTTAAAAAT
1 TTTAAAAATTCTCATCTTGAAAAAGGCTCTTCTAAGTAGAGGTTTAACAAC
* * * *
12148160 TTTAAAAATTCTCATATTGAAAAAAGGCTCATCTAAGTAGAGGTTCAACCAC
1 TTTAAAAATTCTCATCTTG-AAAAAGGCTCTTCTAAGTAGAGGTTTAACAAC
*
12148212 TTTAAAAA-TCTCATCTTGAGAAAGGCTAC-TCTAAGTAGAGGTTTAACAAC
1 TTTAAAAATTCTCATCTTGAAAAAGGCT-CTTCTAAGTAGAGGTTTAACAAC
* *
12148262 TTTAAAAATTCTCATTTTGAAAAAGGTTTCTT-TAAGTAGA
1 TTTAAAAATTCTCATCTTGAAAAAGG-CTCTTCTAAGTAGA
12148302 AGCTCAATGA
Statistics
Matches: 458, Mismatches: 70, Indels: 36
0.81 0.12 0.06
Matches are distributed among these distances:
48 1 0.00
49 44 0.10
50 139 0.30
51 200 0.44
52 74 0.16
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (51 bp):
TTTAAAAATTCTCATCTTGAAAAAGGCTCTTCTAAGTAGAGGTTTAACAAC
Found at i:12148101 original size:153 final size:153
Alignment explanation
Indices: 12147799--12148301 Score: 702
Period size: 153 Copynumber: 3.3 Consensus size: 153
12147789 AAACAAATAC
* * * * ** * *
12147799 TTAACAAC-TTAAAAATTCTCATCTTGAAAAA-GCTTTTCTAAGCA-AAGTCCCAACGACTTTAA
1 TTAACAACTTTAAAAATTCTCATGTTGAAAAAGGCTCTTCTAAGTAGAGGT-TTAACAAATTTAA
* * * * * * * *
12147861 AAATTCTCAT-TAGAGAAAAGGCTCTTTTAAGCAAAGGCTT-AACGAC-TTAAAAATTCTCATTT
65 AAATTCTCATATTGAAAAAAGGCTCATCTAAGTAGAGG-TTCAACCACTTTAAAAA-TCTCATCT
*
12147923 TGA-AAAGGCT-CTTCTAAGTAAAGGT
128 TGAGAAAGGCTAC-TCTAAGTAGAGGT
*
12147948 TTAACAACTTTAAAAATTCTCATGTTGAAAAAGGCCCTTCTAAGTAGAGGTTTAACAAATTTAAA
1 TTAACAACTTTAAAAATTCTCATGTTGAAAAAGGCTCTTCTAAGTAGAGGTTTAACAAATTTAAA
12148013 AATTCTCATATTGAAAAAAGGCTCATCTAAGTAGAGGTTCAACCACTTTAAAAATCTCATCTTGA
66 AATTCTCATATTGAAAAAAGGCTCATCTAAGTAGAGGTTCAACCACTTTAAAAATCTCATCTTGA
12148078 GAAAGGCTACTCTAAGTAGAGGT
131 GAAAGGCTACTCTAAGTAGAGGT
12148101 TTAACAACTTTAAAAATTCTCATGTTGAAAAAGGCTCTTCTAAGTAGAGGTTTAA-AAATTTTAA
1 TTAACAACTTTAAAAATTCTCATGTTGAAAAAGGCTCTTCTAAGTAGAGGTTTAACAAA-TTTAA
12148165 AAATTCTCATATTGAAAAAAGGCTCATCTAAGTAGAGGTTCAACCACTTTAAAAATCTCATCTTG
65 AAATTCTCATATTGAAAAAAGGCTCATCTAAGTAGAGGTTCAACCACTTTAAAAATCTCATCTTG
12148230 AGAAAGGCTACTCTAAGTAGAGGT
130 AGAAAGGCTACTCTAAGTAGAGGT
* *
12148254 TTAACAACTTTAAAAATTCTCATTTTGAAAAAGGTTTCTT-TAAGTAGA
1 TTAACAACTTTAAAAATTCTCATGTTGAAAAAGG-CTCTTCTAAGTAGA
12148302 AGCTCAATGA
Statistics
Matches: 323, Mismatches: 21, Indels: 16
0.90 0.06 0.04
Matches are distributed among these distances:
149 8 0.02
150 22 0.07
151 31 0.10
152 42 0.13
153 215 0.67
154 5 0.02
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.32
Consensus pattern (153 bp):
TTAACAACTTTAAAAATTCTCATGTTGAAAAAGGCTCTTCTAAGTAGAGGTTTAACAAATTTAAA
AATTCTCATATTGAAAAAAGGCTCATCTAAGTAGAGGTTCAACCACTTTAAAAATCTCATCTTGA
GAAAGGCTACTCTAAGTAGAGGT
Found at i:12148113 original size:102 final size:101
Alignment explanation
Indices: 12147705--12148301 Score: 577
Period size: 100 Copynumber: 5.9 Consensus size: 101
12147695 GCTCAACAGT
* * * *** *
12147705 TTTAAAAATTTTTATCTTGAAAAAGGCT-TCTCTAAGAAGAGGCCCAACAACTTTAAAAATTTTC
1 TTTAAAAATTCTCATCTTGAAAAAGGCTCT-TCTAAGTAGAGGTTTAACAACTTTAAAAATTCTC
* ** * * ** * ***
12147769 ATCATGCGAAAGGCTCCTATAAACAAATACTTAACAAC
65 AT-TTGAAAAAGGCTCTTCTAAGTAGAGGTTTAACAAC
* * * ** *
12147807 -TTAAAAATTCTCATCTTGAAAAA-GCTTTTCTAAGCA-AAGTCCCAACGACTTTAAAAATTCTC
1 TTTAAAAATTCTCATCTTGAAAAAGGCTCTTCTAAGTAGAGGT-TTAACAACTTTAAAAATTCTC
* * * * * *
12147869 ATTAGAGAAAAGGCTCTTTTAAGCAAAGGCTTAACGAC
65 ATTTGA-AAAAGGCTCTTCTAAGTAGAGGTTTAACAAC
* *
12147907 -TTAAAAATTCTCATTTTG-AAAAGGCTCTTCTAAGTAAAGGTTTAACAACTTTAAAAATTCTCA
1 TTTAAAAATTCTCATCTTGAAAAAGGCTCTTCTAAGTAGAGGTTTAACAACTTTAAAAATTCTCA
* *
12147970 TGTTGAAAAAGGCCCTTCTAAGTAGAGGTTTAACAAA
66 T-TTGAAAAAGGCTCTTCTAAGTAGAGGTTTAACAAC
* * * *
12148007 TTTAAAAATTCTCATATTGAAAAAAGGCTCATCTAAGTAGAGGTTCAACCACTTTAAAAA-TCTC
1 TTTAAAAATTCTCATCTTG-AAAAAGGCTCTTCTAAGTAGAGGTTTAACAACTTTAAAAATTCTC
*
12148071 ATCTTGAGAAAGGCTAC-TCTAAGTAGAGGTTTAACAAC
65 AT-TTGAAAAAGGCT-CTTCTAAGTAGAGGTTTAACAAC
* * *
12148109 TTTAAAAATTCTCATGTTGAAAAAGGCTCTTCTAAGTAGAGGTTTAAAAATTTTAAAAATTCTCA
1 TTTAAAAATTCTCATCTTGAAAAAGGCTCTTCTAAGTAGAGGTTTAACAACTTTAAAAATTCTCA
* * *
12148174 TATTGAAAAAAGGCTCATCTAAGTAGAGGTTCAACCAC
66 T-TTG-AAAAAGGCTCTTCTAAGTAGAGGTTTAACAAC
*
12148212 TTTAAAAA-TCTCATCTTGAGAAAGGCTAC-TCTAAGTAGAGGTTTAACAACTTTAAAAATTCTC
1 TTTAAAAATTCTCATCTTGAAAAAGGCT-CTTCTAAGTAGAGGTTTAACAACTTTAAAAATTCTC
*
12148275 ATTTTGAAAAAGGTTTCTT-TAAGTAGA
65 A-TTTGAAAAAGG-CTCTTCTAAGTAGA
12148302 AGCTCAATGA
Statistics
Matches: 422, Mismatches: 57, Indels: 33
0.82 0.11 0.06
Matches are distributed among these distances:
99 7 0.02
100 127 0.30
101 95 0.23
102 120 0.28
103 73 0.17
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (101 bp):
TTTAAAAATTCTCATCTTGAAAAAGGCTCTTCTAAGTAGAGGTTTAACAACTTTAAAAATTCTCA
TTTGAAAAAGGCTCTTCTAAGTAGAGGTTTAACAAC
Found at i:12149168 original size:18 final size:18
Alignment explanation
Indices: 12149145--12149184 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
12149135 TATATCCATA
12149145 TTTTCTCTTATTTTTTAT
1 TTTTCTCTTATTTTTTAT
*
12149163 TTTTCTTTTATTTTTTAT
1 TTTTCTCTTATTTTTTAT
12149181 TTTT
1 TTTT
12149185 TAAGCAAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.10, C:0.07, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTCTCTTATTTTTTAT
Found at i:12150770 original size:20 final size:21
Alignment explanation
Indices: 12150733--12150773 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
12150723 CGCCATTAGG
12150733 ATCAATTAAAAACAATCAAGA
1 ATCAATTAAAAACAATCAAGA
*
12150754 ATCAATTAAAAA-TATCAAGA
1 ATCAATTAAAAACAATCAAGA
12150774 GAGAAAGAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.61, C:0.12, G:0.05, T:0.22
Consensus pattern (21 bp):
ATCAATTAAAAACAATCAAGA
Found at i:12153628 original size:39 final size:39
Alignment explanation
Indices: 12153573--12153647 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
12153563 AATCTCAACT
* *
12153573 CATACATAAGGTAAAATCTAGCTTCAAGCATGACCATAC
1 CATACATAAGGCAAAATCTAGCTTCAACCATGACCATAC
*
12153612 CATACATAAGGCAAAATCTAGCTTTAACCATGACCA
1 CATACATAAGGCAAAATCTAGCTTCAACCATGACCA
12153648 CACCTTAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.41, C:0.24, G:0.12, T:0.23
Consensus pattern (39 bp):
CATACATAAGGCAAAATCTAGCTTCAACCATGACCATAC
Found at i:12155733 original size:16 final size:16
Alignment explanation
Indices: 12155698--12155735 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
12155688 TATTATTAAG
*
12155698 TATTTATTTATTGACC
1 TATTTATTTATTGACA
12155714 TATTTATTTACTTG-CA
1 TATTTATTTA-TTGACA
12155730 TATTTA
1 TATTTA
12155736 AATTTTAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 17 0.85
17 3 0.15
ACGTcount: A:0.26, C:0.11, G:0.05, T:0.58
Consensus pattern (16 bp):
TATTTATTTATTGACA
Found at i:12157461 original size:10 final size:11
Alignment explanation
Indices: 12157446--12157474 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
12157436 AGGTGGTAAA
12157446 AAGAAAAAG-G
1 AAGAAAAAGTG
12157456 AAGAAAAAGTG
1 AAGAAAAAGTG
12157467 AAGAAAAA
1 AAGAAAAA
12157475 AAAACAATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.50
11 9 0.50
ACGTcount: A:0.72, C:0.00, G:0.24, T:0.03
Consensus pattern (11 bp):
AAGAAAAAGTG
Found at i:12159317 original size:16 final size:16
Alignment explanation
Indices: 12159298--12159332 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
12159288 ATTTTCATTT
12159298 TTTTGTTATTTATTGA
1 TTTTGTTATTTATTGA
*
12159314 TTTTGTTATTTATTTA
1 TTTTGTTATTTATTGA
12159330 TTT
1 TTT
12159333 ATTTTTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.17, C:0.00, G:0.09, T:0.74
Consensus pattern (16 bp):
TTTTGTTATTTATTGA
Found at i:12159326 original size:4 final size:4
Alignment explanation
Indices: 12159303--12159344 Score: 52
Period size: 4 Copynumber: 10.8 Consensus size: 4
12159293 CATTTTTTTG
*
12159303 TTAT TTAT TGAT TT-T GTTAT TTAT TTAT TTAT TT-T TTAT TTA
1 TTAT TTAT TTAT TTAT -TTAT TTAT TTAT TTAT TTAT TTAT TTA
12159345 CATTAATATT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
3 4 0.12
4 28 0.85
5 1 0.03
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (4 bp):
TTAT
Found at i:12159328 original size:20 final size:19
Alignment explanation
Indices: 12159294--12159344 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 19
12159284 TCTCATTTTC
12159294 ATTTTTT-TGTTATTTATTG
1 ATTTTTTAT-TTATTTATTG
*
12159313 ATTTTGTTATTTATTTATTT
1 ATTTT-TTATTTATTTATTG
12159333 ATTTTTTATTTA
1 ATTTTTTATTTA
12159345 CATTAATATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 12 0.41
20 16 0.55
21 1 0.03
ACGTcount: A:0.20, C:0.00, G:0.06, T:0.75
Consensus pattern (19 bp):
ATTTTTTATTTATTTATTG
Found at i:12160346 original size:21 final size:20
Alignment explanation
Indices: 12160331--12160392 Score: 88
Period size: 20 Copynumber: 3.0 Consensus size: 20
12160321 TAATATTATC
12160331 TTTATATTAAAAAATAATAT
1 TTTATATTAAAAAATAATAT
* *
12160351 TTTGTATTTAAAAATAATAT
1 TTTATATTAAAAAATAATAT
*
12160371 TCTATACTTAAAAAATAATAT
1 TTTATA-TTAAAAAATAATAT
12160392 T
1 T
12160393 GTATTTATTT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
20 22 0.61
21 14 0.39
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (20 bp):
TTTATATTAAAAAATAATAT
Found at i:12161739 original size:30 final size:30
Alignment explanation
Indices: 12161651--12161746 Score: 131
Period size: 29 Copynumber: 3.2 Consensus size: 30
12161641 TATTAAGGGT
* *
12161651 TTATTTAGGTTCAAATTAAAAATTTAAAAAT
1 TTATTTAGATTCAAATTAAAAA-TTAAAAAC
* * *
12161682 TTATTTGGATACAAATT-AAAGTTAAAAAC
1 TTATTTAGATTCAAATTAAAAATTAAAAAC
12161711 TTATTTAGATTCAAATTAAAAATTAAAAAC
1 TTATTTAGATTCAAATTAAAAATTAAAAAC
12161741 TTATTT
1 TTATTT
12161747 GAATGGCATA
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
29 22 0.39
30 20 0.36
31 14 0.25
ACGTcount: A:0.48, C:0.05, G:0.06, T:0.41
Consensus pattern (30 bp):
TTATTTAGATTCAAATTAAAAATTAAAAAC
Found at i:12167563 original size:15 final size:15
Alignment explanation
Indices: 12167545--12167593 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
12167535 TTAGAGTTAT
12167545 ATTCATTAACATTGC
1 ATTCATTAACATTGC
*
12167560 ATTCATAAACATTGC
1 ATTCATTAACATTGC
* *
12167575 TTTCA-T-GCATTGC
1 ATTCATTAACATTGC
12167588 ATTCAT
1 ATTCAT
12167594 AAAAATTACA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
13 10 0.36
15 18 0.64
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41
Consensus pattern (15 bp):
ATTCATTAACATTGC
Found at i:12167608 original size:28 final size:28
Alignment explanation
Indices: 12167554--12167609 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
12167544 TATTCATTAA
* * **
12167554 CATTGCATTCATAAACATTGCTTTCATG
1 CATTGCATTCATAAAAATTACACTCATG
12167582 CATTGCATTCATAAAAATTACACTCATG
1 CATTGCATTCATAAAAATTACACTCATG
12167610 TAATTTGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (28 bp):
CATTGCATTCATAAAAATTACACTCATG
Found at i:12168401 original size:44 final size:42
Alignment explanation
Indices: 12168352--12168438 Score: 102
Period size: 42 Copynumber: 2.0 Consensus size: 42
12168342 AATTTTAAAA
* *
12168352 ATTTTTAAATGCAAACTTTTAAATCTTAGATGTGAATCTCTAAG
1 ATTTTTAAATGAAAAC-CTT-AATCTTAGATGTGAATCTCTAAG
* * * *
12168396 ATTTTTGAATGAAAACCTTAATCTTGGATTTGAATCTTTAAG
1 ATTTTTAAATGAAAACCTTAATCTTAGATGTGAATCTCTAAG
12168438 A
1 A
12168439 GTTTCAATTG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
42 21 0.57
43 2 0.05
44 14 0.38
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.41
Consensus pattern (42 bp):
ATTTTTAAATGAAAACCTTAATCTTAGATGTGAATCTCTAAG
Found at i:12168518 original size:18 final size:17
Alignment explanation
Indices: 12168495--12168623 Score: 66
Period size: 18 Copynumber: 7.4 Consensus size: 17
12168485 AATTTTTATG
12168495 AATCTTGAATCACTTGCA
1 AATCTTGAATC-CTTGCA
* *
12168513 AATCTT-AA-ACTTGCG
1 AATCTTGAATCCTTGCA
** **
12168528 AATCTTTGAACTTTTTTTA
1 AATC-TTGAA-TCCTTGCA
* *
12168547 -ATCTTAAATCTTTGCA
1 AATCTTGAATCCTTGCA
*
12168563 AATCTTGAATCTCTTGCG
1 AATCTTGAATC-CTTGCA
* *
12168581 AATCTTGAATCCCTTACG
1 AATCTTGAAT-CCTTGCA
* *
12168599 AATCTTTGAATCTTTGAA
1 AATC-TTGAATCCTTGCA
12168617 AATCTTG
1 AATCTTG
12168624 CTTCTTTGAA
Statistics
Matches: 84, Mismatches: 19, Indels: 17
0.70 0.16 0.14
Matches are distributed among these distances:
15 9 0.11
16 7 0.08
17 20 0.24
18 39 0.46
19 9 0.11
ACGTcount: A:0.29, C:0.19, G:0.11, T:0.41
Consensus pattern (17 bp):
AATCTTGAATCCTTGCA
Found at i:12168585 original size:35 final size:35
Alignment explanation
Indices: 12168477--12168611 Score: 105
Period size: 35 Copynumber: 3.9 Consensus size: 35
12168467 ACAAATCTTT
* ** *
12168477 GAATCTTAAATTTTTATGAATCTTGAATCACTTGC
1 GAATCTTAAATCTTTGCGAATCTTGAATCTCTTGC
* * **
12168512 AAATCTTAAA-C-TTGCGAATCTTTGAA-CTTTTTT
1 GAATCTTAAATCTTTGCGAATC-TTGAATCTCTTGC
* *
12168545 TAATCTTAAATCTTTGCAAATCTTGAATCTCTTGC
1 GAATCTTAAATCTTTGCGAATCTTGAATCTCTTGC
* * *
12168580 GAATCTTGAATCCCTTACGAATCTTTGAATCT
1 GAATCTTAAAT-CTTTGCGAATC-TTGAATCT
12168612 TTGAAAATCT
Statistics
Matches: 76, Mismatches: 18, Indels: 10
0.73 0.17 0.10
Matches are distributed among these distances:
33 19 0.25
34 11 0.14
35 30 0.39
36 8 0.11
37 8 0.11
ACGTcount: A:0.30, C:0.18, G:0.10, T:0.42
Consensus pattern (35 bp):
GAATCTTAAATCTTTGCGAATCTTGAATCTCTTGC
Found at i:12168653 original size:18 final size:18
Alignment explanation
Indices: 12168626--12168687 Score: 81
Period size: 18 Copynumber: 3.4 Consensus size: 18
12168616 AAATCTTGCT
* *
12168626 TCTTTGAATCTTTATGAA
1 TCTTTAAATCTTTGTGAA
12168644 TCTTTAAATCTCTTGTGAA
1 TCTTTAAATCT-TTGTGAA
12168663 TCTTTAAA-CTTTTGTGAA
1 TCTTTAAATC-TTTGTGAA
12168681 TCTTTAA
1 TCTTTAA
12168688 TTTTTACGAA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
18 25 0.62
19 15 0.38
ACGTcount: A:0.27, C:0.13, G:0.10, T:0.50
Consensus pattern (18 bp):
TCTTTAAATCTTTGTGAA
Found at i:12168719 original size:36 final size:36
Alignment explanation
Indices: 12168679--12168783 Score: 97
Period size: 36 Copynumber: 2.9 Consensus size: 36
12168669 AACTTTTGTG
12168679 AATCTTTAATTTTTACGAATTTTGAATTTTTTTGCA
1 AATCTTTAATTTTTACGAATTTTGAATTTTTTTGCA
* * * * *
12168715 AATCTTTACAATTGT--GAAACTTTGAAATTCTTTGCA
1 AATCTTTA-ATTTTTACG-AATTTTGAATTTTTTTGCA
* * *
12168751 AATCTTAAATCTTTCACGAATCTTGAATTTTTT
1 AATCTTTAAT-TTTTACGAATTTTGAATTTTTT
12168784 AGAATTTTGA
Statistics
Matches: 51, Mismatches: 13, Indels: 9
0.70 0.18 0.12
Matches are distributed among these distances:
35 2 0.04
36 33 0.65
37 15 0.29
38 1 0.02
ACGTcount: A:0.30, C:0.12, G:0.09, T:0.49
Consensus pattern (36 bp):
AATCTTTAATTTTTACGAATTTTGAATTTTTTTGCA
Found at i:12168793 original size:17 final size:17
Alignment explanation
Indices: 12168751--12168801 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
12168741 ATTCTTTGCA
* *
12168751 AATCTTAAATCTTTCACG
1 AATCTTGAATCTTTTA-G
*
12168769 AATCTTGAATTTTTTAG
1 AATCTTGAATCTTTTAG
*
12168786 AATTTTGAATCTTTTA
1 AATCTTGAATCTTTTA
12168802 CGGACCTTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
17 15 0.54
18 13 0.46
ACGTcount: A:0.31, C:0.12, G:0.08, T:0.49
Consensus pattern (17 bp):
AATCTTGAATCTTTTAG
Found at i:12169001 original size:22 final size:22
Alignment explanation
Indices: 12168898--12169002 Score: 56
Period size: 22 Copynumber: 4.9 Consensus size: 22
12168888 TTTAAATTCA
*
12168898 AATTGAGAATCTTTGAA--TTT
1 AATTGAGAATTTTTGAATTTTT
* * * * *
12168918 AATTGTGAACTTCTGAA-CTTC
1 AATTGAGAATTTTTGAATTTTT
* * **
12168939 AAGTTAAGAATTCTTGAATTTCA
1 AA-TTGAGAATTTTTGAATTTTT
* * *
12168962 AATT-ACAATATTTAAATTTTT
1 AATTGAGAATTTTTGAATTTTT
12168983 AATTGAGAATTTTTGAATTT
1 AATTGAGAATTTTTGAATTT
12169003 CAATTGTGAA
Statistics
Matches: 59, Mismatches: 22, Indels: 6
0.68 0.25 0.07
Matches are distributed among these distances:
20 13 0.22
21 19 0.32
22 24 0.41
23 3 0.05
ACGTcount: A:0.36, C:0.08, G:0.11, T:0.45
Consensus pattern (22 bp):
AATTGAGAATTTTTGAATTTTT
Found at i:12169008 original size:21 final size:21
Alignment explanation
Indices: 12168898--12169014 Score: 85
Period size: 21 Copynumber: 5.5 Consensus size: 21
12168888 TTTAAATTCA
*
12168898 AATTGAGAATCTTTGAATTT-
1 AATTGAGAATTTTTGAATTTC
* * * *
12168918 AATTGTGAACTTCTGAACTTC
1 AATTGAGAATTTTTGAATTTC
* *
12168939 AAGTTAAGAATTCTTGAATTTC
1 AA-TTGAGAATTTTTGAATTTC
* * * *
12168961 AAATT-ACAATATTTAAATTTTT
1 -AATTGAGAATTTTTGAA-TTTC
12168983 AATTGAGAATTTTTGAATTTC
1 AATTGAGAATTTTTGAATTTC
*
12169004 AATTGTGAATT
1 AATTGAGAATT
12169015 GCAAATCTTT
Statistics
Matches: 71, Mismatches: 21, Indels: 9
0.70 0.21 0.09
Matches are distributed among these distances:
20 15 0.21
21 27 0.38
22 27 0.38
23 2 0.03
ACGTcount: A:0.36, C:0.08, G:0.12, T:0.44
Consensus pattern (21 bp):
AATTGAGAATTTTTGAATTTC
Found at i:12170205 original size:94 final size:93
Alignment explanation
Indices: 12170006--12170232 Score: 237
Period size: 94 Copynumber: 2.4 Consensus size: 93
12169996 GAAATCTTTA
* * * *
12170006 AATTATGAATTCTACCAAATTATTGGAGAATTTCAAAACAAATTTTGAAAAATAATTTTTCATCC
1 AATTA-GAATTTTACCAAATTATTGGAGAATTTCATAACAAATTTTGAAAAATAAATTTTCACCC
*
12170071 TGCTGAATGATTAAAGGATTTAAATATCG
65 TACTGAATGATTAAAGGATTTAAATATCG
* * **
12170100 AATTATGAATTTTACCAAATGACTGGAGAATTTCATAATGAATTTTAAAGAAAAA-AAATTTTCA
1 AATTA-GAATTTTACCAAATTATTGGAGAATTTCATAACAAATTTT---GAAAAATAAATTTTC-
* *
12170164 ACCCTACTGAATGATTGAAA-TATTTAAATTTC-
61 ACCCTACTGAATGATT-AAAGGATTTAAATATCG
* * *
12170196 TATTA-AATTTTATCAAATTATTGGAGAATTTAATAAC
1 AATTAGAATTTTACCAAATTATTGGAGAATTTCATAAC
12170233 CTTTATTTTT
Statistics
Matches: 111, Mismatches: 17, Indels: 10
0.80 0.12 0.07
Matches are distributed among these distances:
94 67 0.60
96 11 0.10
97 30 0.27
98 3 0.03
ACGTcount: A:0.43, C:0.10, G:0.11, T:0.37
Consensus pattern (93 bp):
AATTAGAATTTTACCAAATTATTGGAGAATTTCATAACAAATTTTGAAAAATAAATTTTCACCCT
ACTGAATGATTAAAGGATTTAAATATCG
Found at i:12175056 original size:21 final size:21
Alignment explanation
Indices: 12175023--12175099 Score: 74
Period size: 21 Copynumber: 3.9 Consensus size: 21
12175013 TGCCTCCACA
12175023 TCAAGACAACTTTATGTCAAG
1 TCAAGACAACTTTATGTCAAG
* * *
12175044 TCAAGTCACCTTTATGTCTAG
1 TCAAGACAACTTTATGTCAAG
*
12175065 TC--TAC--CTTTA-GTCAAG
1 TCAAGACAACTTTATGTCAAG
*
12175081 TCATGACAACTTTATGTCA
1 TCAAGACAACTTTATGTCA
12175100 TGAGTCATCT
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
16 7 0.16
17 5 0.11
18 2 0.05
19 1 0.02
20 5 0.11
21 24 0.55
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (21 bp):
TCAAGACAACTTTATGTCAAG
Found at i:12175082 original size:16 final size:15
Alignment explanation
Indices: 12175042--12175083 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
12175032 CTTTATGTCA
12175042 AGTCAAGTCACCTTT
1 AGTCAAGTCACCTTT
*
12175057 ATGTCTAGTCTACCTTT
1 A-GTCAAGTC-ACCTTT
12175074 AGTCAAGTCA
1 AGTCAAGTCA
12175084 TGACAACTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 2 0.09
16 14 0.61
17 7 0.30
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (15 bp):
AGTCAAGTCACCTTT
Found at i:12175769 original size:10 final size:10
Alignment explanation
Indices: 12175754--12175783 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
12175744 ACACTGTTGA
12175754 AAAATAGTAT
1 AAAATAGTAT
12175764 AAAATAGTAT
1 AAAATAGTAT
*
12175774 CAAATAGTAT
1 AAAATAGTAT
12175784 TGTCACGACT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.57, C:0.03, G:0.10, T:0.30
Consensus pattern (10 bp):
AAAATAGTAT
Found at i:12176719 original size:21 final size:21
Alignment explanation
Indices: 12176644--12176720 Score: 67
Period size: 21 Copynumber: 3.9 Consensus size: 21
12176634 AGATGACTCA
*
12176644 TGACATAAAGTTGTCATGACT
1 TGACATAAAGTTGTCTTGACT
*
12176665 TGAC-TAAAG--G--TAGACT
1 TGACATAAAGTTGTCTTGACT
* *
12176681 AGACATAAA-TGTGACTTGACT
1 TGACATAAAGT-TGTCTTGACT
12176702 TGACATAAAGTTGTCTTGA
1 TGACATAAAGTTGTCTTGA
12176721 TGTGGAGGCA
Statistics
Matches: 43, Mismatches: 6, Indels: 14
0.68 0.10 0.22
Matches are distributed among these distances:
16 7 0.16
17 4 0.09
18 1 0.02
19 1 0.02
20 5 0.12
21 24 0.56
22 1 0.02
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.31
Consensus pattern (21 bp):
TGACATAAAGTTGTCTTGACT
Found at i:12189208 original size:22 final size:20
Alignment explanation
Indices: 12189170--12189212 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
12189160 TCATTTTCCA
*
12189170 TCTTTTTTTATTATTTTTAT
1 TCTTATTTTATTATTTTTAT
12189190 TCTTATTTTAGTTAGTTTTTAT
1 TCTTATTTTA-TTA-TTTTTAT
12189212 T
1 T
12189213 TTTTAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 9 0.45
21 3 0.15
22 8 0.40
ACGTcount: A:0.16, C:0.05, G:0.05, T:0.74
Consensus pattern (20 bp):
TCTTATTTTATTATTTTTAT
Found at i:12189680 original size:3 final size:3
Alignment explanation
Indices: 12189672--12189717 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
12189662 ACATGTATAT
12189672 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
12189718 AACTTAAAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:12190578 original size:3 final size:3
Alignment explanation
Indices: 12190570--12190601 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
12190560 CCTAACTCTA
12190570 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
12190602 ATTTTAATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:12193258 original size:33 final size:34
Alignment explanation
Indices: 12193221--12193285 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
12193211 TTAAAATTTC
* *
12193221 AAAAA-TAAAA-AATAAAAATTATTTTCGAAAAGT
1 AAAAATTAAAATAA-AAAAAATATTTTCAAAAAGT
12193254 AAAAATTAAAATAAAAAAAATATTTTCAAAAA
1 AAAAATTAAAATAAAAAAAATATTTTCAAAAA
12193286 ATATTTTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 5 0.18
34 21 0.75
35 2 0.07
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (34 bp):
AAAAATTAAAATAAAAAAAATATTTTCAAAAAGT
Found at i:12193284 original size:13 final size:13
Alignment explanation
Indices: 12193268--12193292 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12193258 ATTAAAATAA
12193268 AAAAAATATTTTC
1 AAAAAATATTTTC
12193281 AAAAAATATTTT
1 AAAAAATATTTT
12193293 TATTAACCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (13 bp):
AAAAAATATTTTC
Found at i:12198299 original size:89 final size:88
Alignment explanation
Indices: 12198170--12198354 Score: 207
Period size: 91 Copynumber: 2.1 Consensus size: 88
12198160 AAATTTAGAA
* * * *
12198170 TTAATTAATTAAAAATATTTTAAATTAATGCTACCTAATTATTTG-AGGATTT-A-GTTAAAATA
1 TTAATGAATTAAAAATATTTTAAATTAATGCTACCAAATTA-TTGAAAGATTTAATCTTAAAAT-
12198232 AAATATTACCAAACTATTAAAAGAT
64 AAATATTACCAAACTATTAAAAGAT
* **
12198257 TTTATGAATTAAAAATGAATTTTATTTTAAT-CTTACCAAATTATTGAAAGATTTAAATCTTAAA
1 TTAATGAATTAAAAAT--ATTTTAAATTAATGC-TACCAAATTATTGAAAGATTT-AATCTTAAA
* *
12198321 ATAAATCTTATCAAACTATTAAAAGAT
62 ATAAATATTACCAAACTATTAAAAGAT
12198348 TTAATGA
1 TTAATGA
12198355 TCTTTTACAA
Statistics
Matches: 81, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
87 14 0.17
88 4 0.05
89 26 0.32
91 30 0.37
92 7 0.09
ACGTcount: A:0.46, C:0.07, G:0.06, T:0.40
Consensus pattern (88 bp):
TTAATGAATTAAAAATATTTTAAATTAATGCTACCAAATTATTGAAAGATTTAATCTTAAAATAA
ATATTACCAAACTATTAAAAGAT
Found at i:12203261 original size:2 final size:2
Alignment explanation
Indices: 12203256--12203291 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
12203246 ATATAACTTC
12203256 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
12203292 AGGGACACAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:12205807 original size:41 final size:44
Alignment explanation
Indices: 12205723--12205807 Score: 106
Period size: 41 Copynumber: 2.0 Consensus size: 44
12205713 AAGTGAAGGG
**
12205723 TTTTCGTAATTATGATATGAAAGTATTATAATAAATAATTTATAT
1 TTTTCGTAATTATGATATGAAAG-AGCATAATAAATAATTTATAT
12205768 TTTTC-TAATTATGATAT-AAA-AGCATAAT-AATCAATTTATA
1 TTTTCGTAATTATGATATGAAAGAGCATAATAAAT-AATTTATA
12205808 AGAAAGGATA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
40 3 0.08
41 14 0.38
43 3 0.08
44 12 0.32
45 5 0.14
ACGTcount: A:0.44, C:0.05, G:0.07, T:0.45
Consensus pattern (44 bp):
TTTTCGTAATTATGATATGAAAGAGCATAATAAATAATTTATAT
Found at i:12206754 original size:16 final size:16
Alignment explanation
Indices: 12206718--12206752 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
12206708 GAAATCTTAG
*
12206718 ATTTAAATTTCATCAT
1 ATTTAAATTTAATCAT
12206734 ATTTAAATTTAATC-T
1 ATTTAAATTTAATCAT
12206749 ATTT
1 ATTT
12206753 TATAATGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.54
Consensus pattern (16 bp):
ATTTAAATTTAATCAT
Found at i:12210117 original size:20 final size:22
Alignment explanation
Indices: 12210071--12210117 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
12210061 TTTTCGAAGA
12210071 ATAAAATTTTACTAATATATTG
1 ATAAAATTTTACTAATATATTG
*
12210093 A-AAAATTTTA-TAAT-TTTTG
1 ATAAAATTTTACTAATATATTG
12210112 ATAAAA
1 ATAAAA
12210118 AAAATAAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 5 0.22
20 8 0.35
21 9 0.39
22 1 0.04
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (22 bp):
ATAAAATTTTACTAATATATTG
Found at i:12213262 original size:12 final size:12
Alignment explanation
Indices: 12213245--12213269 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
12213235 AAGACTGGAC
12213245 AACTAATTATAA
1 AACTAATTATAA
12213257 AACTAATTATAA
1 AACTAATTATAA
12213269 A
1 A
12213270 TCTAGATAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (12 bp):
AACTAATTATAA
Found at i:12217323 original size:31 final size:31
Alignment explanation
Indices: 12217288--12217383 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 31
12217278 TTAATTTAGG
* *
12217288 TACAAATTAAAAATTTGAAGG-TTTATTTGGA
1 TACAAATTAAAAAGTT-AAGGACTTATTTGGA
*
12217319 TACAAATT-AAAGGTTAAGGACTTATTTGGA
1 TACAAATTAAAAAGTTAAGGACTTATTTGGA
* * * * *
12217349 TTCAAATT-AAAACTTAAGAATTTATTTGAA
1 TACAAATTAAAAAGTTAAGGACTTATTTGGA
12217379 TACAA
1 TACAA
12217384 TAAAAGTATA
Statistics
Matches: 54, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
29 4 0.07
30 42 0.78
31 8 0.15
ACGTcount: A:0.44, C:0.06, G:0.14, T:0.36
Consensus pattern (31 bp):
TACAAATTAAAAAGTTAAGGACTTATTTGGA
Found at i:12217346 original size:30 final size:30
Alignment explanation
Indices: 12217310--12217404 Score: 95
Period size: 30 Copynumber: 3.2 Consensus size: 30
12217300 ATTTGAAGGT
** *
12217310 TTATTTGGATACAAATTAAAGGTTAAGGAC
1 TTATTTGGATACAAATTAAAACTTAAGAAC
* *
12217340 TTATTTGGATTCAAATTAAAACTTAAGAAT
1 TTATTTGGATACAAATTAAAACTTAAGAAC
* * *
12217370 TTATTTGAATAC-AA-TAAAAGTATAAGAAT
1 TTATTTGGATACAAATTAAAACT-TAAGAAC
12217399 TTATTT
1 TTATTT
12217405 AAGTAAAGTT
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
28 6 0.11
29 15 0.27
30 35 0.62
ACGTcount: A:0.43, C:0.05, G:0.13, T:0.39
Consensus pattern (30 bp):
TTATTTGGATACAAATTAAAACTTAAGAAC
Found at i:12218209 original size:18 final size:19
Alignment explanation
Indices: 12218188--12218227 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
12218178 AAAATAATTC
12218188 ATTATAA-TATTTTTTTCA
1 ATTATAACTATTTTTTTCA
*
12218206 ATTATAACCTTTTTTTTTCA
1 ATTATAA-CTATTTTTTTCA
12218226 AT
1 AT
12218228 AAAGTAAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 7 0.37
20 12 0.63
ACGTcount: A:0.30, C:0.10, G:0.00, T:0.60
Consensus pattern (19 bp):
ATTATAACTATTTTTTTCA
Found at i:12220414 original size:14 final size:16
Alignment explanation
Indices: 12220382--12220412 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
12220372 TTAAGCTCTC
12220382 TCTCTCTTTTTTCTTT
1 TCTCTCTTTTTTCTTT
12220398 TCTCTC-TTTTTCTTT
1 TCTCTCTTTTTTCTTT
12220413 CTAGGAACAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (16 bp):
TCTCTCTTTTTTCTTT
Found at i:12222633 original size:31 final size:31
Alignment explanation
Indices: 12222595--12222667 Score: 96
Period size: 30 Copynumber: 2.4 Consensus size: 31
12222585 TAAATTTAGG
*
12222595 TACAAATTAAAAGTTTGAA-GGATTATTTGGA
1 TACAAATTAAAAGGTT-AAGGGATTATTTGGA
*
12222626 TACAAATT-AAAGGTTAAGGGCTTATTTGGA
1 TACAAATTAAAAGGTTAAGGGATTATTTGGA
*
12222656 TTCAAATTAAAA
1 TACAAATTAAAA
12222668 ATTAAGAATT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
29 2 0.05
30 24 0.65
31 11 0.30
ACGTcount: A:0.42, C:0.05, G:0.18, T:0.34
Consensus pattern (31 bp):
TACAAATTAAAAGGTTAAGGGATTATTTGGA
Found at i:12222681 original size:30 final size:30
Alignment explanation
Indices: 12222595--12222683 Score: 81
Period size: 30 Copynumber: 2.9 Consensus size: 30
12222585 TAAATTTAGG
* *
12222595 TACAAATTAAAAGTTTGAAGGA-TTATTTGGA
1 TACAAATTAAAA-ATT-AAGAACTTATTTGGA
** **
12222626 TACAAATTAAAGGTTAAGGGCTTATTTGGA
1 TACAAATTAAAAATTAAGAACTTATTTGGA
* *
12222656 TTCAAATTAAAAATTAAGAATTTATTTG
1 TACAAATTAAAAATTAAGAACTTATTTG
12222684 AAAACAATTA
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
29 4 0.08
30 33 0.69
31 11 0.23
ACGTcount: A:0.42, C:0.04, G:0.17, T:0.37
Consensus pattern (30 bp):
TACAAATTAAAAATTAAGAACTTATTTGGA
Found at i:12224752 original size:60 final size:61
Alignment explanation
Indices: 12224627--12224744 Score: 166
Period size: 60 Copynumber: 2.0 Consensus size: 61
12224617 TTCATAAGAA
* * * * *
12224627 TATTTTCATAATTATGGTAAGAAAGGTAATGTAGTAATTTTGATTAATTATGAGAGAAAAG
1 TATTTCCATAATTATGGTAAGAAAGGTAATATAGTAATTTTGATTAATAATAAAAGAAAAG
* *
12224688 TATTTCCATAATTATGGT-AGGAAGGTATTATAGTAATTTTGATTAATAATAAAAGAA
1 TATTTCCATAATTATGGTAAGAAAGGTAATATAGTAATTTTGATTAATAATAAAAGAA
12224745 TGGTATTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
60 33 0.66
61 17 0.34
ACGTcount: A:0.42, C:0.03, G:0.18, T:0.38
Consensus pattern (61 bp):
TATTTCCATAATTATGGTAAGAAAGGTAATATAGTAATTTTGATTAATAATAAAAGAAAAG
Found at i:12226748 original size:55 final size:55
Alignment explanation
Indices: 12226676--12226787 Score: 170
Period size: 55 Copynumber: 2.0 Consensus size: 55
12226666 TTTTGAGAAG
* *
12226676 AACTAAGTATCAATTGAAGTATTCTCTTCAAGTTGTTTACTAACTTGTACAAGTA
1 AACTAAATATCAATTGAAGTATTCTCTTCAAGTTGTTTACTAACTTCTACAAGTA
* * * *
12226731 AACTAAATATCACTTGAAGTGTTCTTTTTAAGTTGTTTACTAACTTCTACAAGTA
1 AACTAAATATCAATTGAAGTATTCTCTTCAAGTTGTTTACTAACTTCTACAAGTA
12226786 AA
1 AA
12226788 AATAAAAGAT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (55 bp):
AACTAAATATCAATTGAAGTATTCTCTTCAAGTTGTTTACTAACTTCTACAAGTA
Found at i:12233321 original size:15 final size:14
Alignment explanation
Indices: 12233282--12233322 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
12233272 TTGTTAATTA
*
12233282 TTATATTTTTTTTG
1 TTATATTTTATTTG
*
12233296 TTATATATTATTTG
1 TTATATTTTATTTG
12233310 TTAATATTTTATT
1 TT-ATATTTTATT
12233323 ATTTAATTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
14 14 0.61
15 9 0.39
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (14 bp):
TTATATTTTATTTG
Found at i:12233476 original size:30 final size:30
Alignment explanation
Indices: 12233420--12233476 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
12233410 TGGTAAATAG
*
12233420 TATTATCTTTTTTAACTAATTCATTTTCTA
1 TATTATCTTTTTTAAATAATTCATTTTCTA
12233450 TATTAT-TGTTTTTAAATATATT-ATTTT
1 TATTATCT-TTTTTAAATA-ATTCATTTT
12233477 ATGAGATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
29 1 0.04
30 20 0.83
31 3 0.12
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.63
Consensus pattern (30 bp):
TATTATCTTTTTTAAATAATTCATTTTCTA
Found at i:12233819 original size:61 final size:62
Alignment explanation
Indices: 12233732--12233852 Score: 165
Period size: 61 Copynumber: 2.0 Consensus size: 62
12233722 TGAATCTTAG
*
12233732 TTTACTAAGTTTTATATATTTCATAATT-TCATCATCTATGGTGAGAATTTTTGAG-TTTTAA
1 TTTACTAAGTTTTATATATTTCATAATTCT-ATCATCTATGGTGAGAATTTGTGAGATTTTAA
* * * * *
12233793 TTTACTATGTTTTATGTATTTTATAATTCTATTATTTATGGTGAGAATTTGTGAGATTTT
1 TTTACTAAGTTTTATATATTTCATAATTCTATCATCTATGGTGAGAATTTGTGAGATTTT
12233853 TACAAGATAA
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
61 47 0.90
62 5 0.10
ACGTcount: A:0.27, C:0.06, G:0.13, T:0.54
Consensus pattern (62 bp):
TTTACTAAGTTTTATATATTTCATAATTCTATCATCTATGGTGAGAATTTGTGAGATTTTAA
Found at i:12239392 original size:31 final size:31
Alignment explanation
Indices: 12239339--12239429 Score: 91
Period size: 30 Copynumber: 3.0 Consensus size: 31
12239329 AGTGATTTAT
12239339 GTTAAGGG-TTAATTTAGG-TACAAATTAAAAG
1 GTTAAGGGCTT-A-TTAGGATACAAATTAAAAG
* * *
12239370 TTTGAA-GGTTTATTTGGATACAAATT-AAAG
1 GTT-AAGGGCTTATTAGGATACAAATTAAAAG
*
12239400 GTTAAGGGCTTATTAGGATTCAAATTAAAA
1 GTTAAGGGCTTATTAGGATACAAATTAAAA
12239430 ATTAAGAATT
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
29 2 0.04
30 27 0.55
31 16 0.33
32 4 0.08
ACGTcount: A:0.40, C:0.04, G:0.21, T:0.35
Consensus pattern (31 bp):
GTTAAGGGCTTATTAGGATACAAATTAAAAG
Found at i:12241523 original size:61 final size:61
Alignment explanation
Indices: 12241399--12241525 Score: 166
Period size: 60 Copynumber: 2.1 Consensus size: 61
12241389 TTCATAAGAA
* * * * * *
12241399 TATTTTCATAATTATGGTAGGAAAGGTAATATAGTAATTTTGCTTAATTATGAGAGAAAAG
1 TATTTCCATAATTATGGTAGGAAAGATAATATAGTAATTTTGATTAATAATAAAAGAAAAG
* *
12241460 TATTTCCATAATTATGGTAGG-AAGATATTATAGTAATTTTGATTAATAATAAAAGAATGAG
1 TATTTCCATAATTATGGTAGGAAAGATAATATAGTAATTTTGATTAATAATAAAAGAA-AAG
12241521 TATTT
1 TATTT
12241526 TTAGTAATTC
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
60 30 0.53
61 27 0.47
ACGTcount: A:0.40, C:0.03, G:0.17, T:0.39
Consensus pattern (61 bp):
TATTTCCATAATTATGGTAGGAAAGATAATATAGTAATTTTGATTAATAATAAAAGAAAAG
Found at i:12243528 original size:55 final size:55
Alignment explanation
Indices: 12243462--12243573 Score: 206
Period size: 55 Copynumber: 2.0 Consensus size: 55
12243452 GTTTTAGAAG
*
12243462 AACTAAGTATCAATTGAAGTGTTCTCTTCAAGTTGTTTACTAACTTCTATAAGTA
1 AACTAAGTATCAATTGAAGTGTTCTCTTCAAGTTGTTTACTAACTTCTACAAGTA
*
12243517 AACTAAGTATCAATTGAAGTGTTCTCTTCAAGTTGTTTATTAACTTCTACAAGTA
1 AACTAAGTATCAATTGAAGTGTTCTCTTCAAGTTGTTTACTAACTTCTACAAGTA
12243572 AA
1 AA
12243574 AGTAAAAGAT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.39
Consensus pattern (55 bp):
AACTAAGTATCAATTGAAGTGTTCTCTTCAAGTTGTTTACTAACTTCTACAAGTA
Found at i:12250598 original size:61 final size:62
Alignment explanation
Indices: 12250511--12250631 Score: 165
Period size: 61 Copynumber: 2.0 Consensus size: 62
12250501 TGAATCTTAG
*
12250511 TTTACTAAGTTTTATATATTTCATAATT-TCATCATCTATGGTGAGAATTTTTGAG-TTTTAA
1 TTTACTAAGTTTTATATATTTCATAATTCT-ATCATCTATGGTGAGAATTTGTGAGATTTTAA
* * * * *
12250572 TTTACTATGTTTTATGTATTTTATAATTCTATTATTTATGGTGAGAATTTGTGAGATTTT
1 TTTACTAAGTTTTATATATTTCATAATTCTATCATCTATGGTGAGAATTTGTGAGATTTT
12250632 TACAAGATAA
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
61 47 0.90
62 5 0.10
ACGTcount: A:0.27, C:0.06, G:0.13, T:0.54
Consensus pattern (62 bp):
TTTACTAAGTTTTATATATTTCATAATTCTATCATCTATGGTGAGAATTTGTGAGATTTTAA
Found at i:12256168 original size:31 final size:31
Alignment explanation
Indices: 12256115--12256205 Score: 91
Period size: 30 Copynumber: 3.0 Consensus size: 31
12256105 AGTGATTTAT
12256115 GTTAAGGG-TTAATTTAGG-TACAAATTAAAAG
1 GTTAAGGGCTT-A-TTAGGATACAAATTAAAAG
* * *
12256146 TTTGAA-GGTTTATTTGGATACAAATT-AAAG
1 GTT-AAGGGCTTATTAGGATACAAATTAAAAG
*
12256176 GTTAAGGGCTTATTAGGATTCAAATTAAAA
1 GTTAAGGGCTTATTAGGATACAAATTAAAA
12256206 ATTAAGAATT
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
29 2 0.04
30 27 0.55
31 16 0.33
32 4 0.08
ACGTcount: A:0.40, C:0.04, G:0.21, T:0.35
Consensus pattern (31 bp):
GTTAAGGGCTTATTAGGATACAAATTAAAAG
Found at i:12258303 original size:61 final size:61
Alignment explanation
Indices: 12258179--12258305 Score: 175
Period size: 60 Copynumber: 2.1 Consensus size: 61
12258169 TTCATAAGAA
* * * * *
12258179 TATTTTCATAATTATGGTAGGAAAGGTAATATAGTAATTTTGATTAATTATGAGAGAAAAG
1 TATTTCCATAATTATGGTAGGAAAGATAATATAGTAATTTTGATTAATAATAAAAGAAAAG
* *
12258240 TATTTCCATAATTATGGTAGG-AAGATATTATAGTAATTTTGATTAATAATAAAAGAATGAG
1 TATTTCCATAATTATGGTAGGAAAGATAATATAGTAATTTTGATTAATAATAAAAGAA-AAG
12258301 TATTT
1 TATTT
12258306 TTAGTAATTT
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
60 31 0.53
61 27 0.47
ACGTcount: A:0.41, C:0.02, G:0.17, T:0.39
Consensus pattern (61 bp):
TATTTCCATAATTATGGTAGGAAAGATAATATAGTAATTTTGATTAATAATAAAAGAAAAG
Found at i:12260296 original size:55 final size:55
Alignment explanation
Indices: 12260235--12260410 Score: 235
Period size: 55 Copynumber: 3.0 Consensus size: 55
12260225 GTTTTAGAAG
*
12260235 AACTAAGTATCAATTGAAGTGTTCTCTTCAAGTTGTTTACTAACTTTTATAAGTA
1 AACTAAGTATCAATTGAAGTGTTCTCTTCAAGTTGTTTACTAACTTCTATAAGTA
12260290 AACTAAGTATCAATTGAAGTGTTTGAAGTCTTCTCTTCAAGTTGTTTACTAACTTCTATAAGTA
1 AACTAAGTATCAATTGAA--G--T---G--TTCTCTTCAAGTTGTTTACTAACTTCTATAAGTA
* * *
12260354 AACAAAGTATCAATTGAAGTGTTCTCTTCAAGTTGTTTATTAACTTCTACAAGTA
1 AACTAAGTATCAATTGAAGTGTTCTCTTCAAGTTGTTTACTAACTTCTATAAGTA
12260409 AA
1 AA
12260411 AGTAAAAGAT
Statistics
Matches: 108, Mismatches: 4, Indels: 18
0.83 0.03 0.14
Matches are distributed among these distances:
55 52 0.48
57 2 0.02
59 1 0.01
60 1 0.01
62 2 0.02
64 50 0.46
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.40
Consensus pattern (55 bp):
AACTAAGTATCAATTGAAGTGTTCTCTTCAAGTTGTTTACTAACTTCTATAAGTA
Found at i:12260328 original size:64 final size:64
Alignment explanation
Indices: 12260248--12260376 Score: 231
Period size: 64 Copynumber: 2.0 Consensus size: 64
12260238 TAAGTATCAA
* * *
12260248 TTGAAGTGTTCTCTTCAAGTTGTTTACTAACTTTTATAAGTAAACTAAGTATCAATTGAAGTGT
1 TTGAAGTCTTCTCTTCAAGTTGTTTACTAACTTCTATAAGTAAACAAAGTATCAATTGAAGTGT
12260312 TTGAAGTCTTCTCTTCAAGTTGTTTACTAACTTCTATAAGTAAACAAAGTATCAATTGAAGTGT
1 TTGAAGTCTTCTCTTCAAGTTGTTTACTAACTTCTATAAGTAAACAAAGTATCAATTGAAGTGT
12260376 T
1 T
12260377 CTCTTCAAGT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (64 bp):
TTGAAGTCTTCTCTTCAAGTTGTTTACTAACTTCTATAAGTAAACAAAGTATCAATTGAAGTGT
Found at i:12273650 original size:15 final size:15
Alignment explanation
Indices: 12273626--12273655 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
12273616 AAGAAATTTA
12273626 TAAAAATTTATCATT
1 TAAAAATTTATCATT
*
12273641 TAAAATTTTATCATT
1 TAAAAATTTATCATT
12273656 GGATAATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (15 bp):
TAAAAATTTATCATT
Found at i:12276809 original size:5 final size:5
Alignment explanation
Indices: 12276799--12276825 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
12276789 CCTAATAAGG
12276799 AAGAA AAGAA AAGAA AAGAA AAGAA AA
1 AAGAA AAGAA AAGAA AAGAA AAGAA AA
12276826 ACCTTGATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAGAA
Found at i:12278203 original size:61 final size:61
Alignment explanation
Indices: 12278077--12278194 Score: 166
Period size: 60 Copynumber: 2.0 Consensus size: 61
12278067 TTCATAAGAA
* * * * * *
12278077 TATTTTCATAATTATGGTAGGAAAGGTAATATAGTAATTTTGATTAATTATGAGAGAAAAG
1 TATTTCCATAATTATGATAGGAAAGATAATATAGTAATTTTGATTAATAATAAAAGAAAAG
*
12278138 TATTTCCATAATTATGATAGG-AAGATATTATAGTAATTTTGATTAATAATAAAAGAA
1 TATTTCCATAATTATGATAGGAAAGATAATATAGTAATTTTGATTAATAATAAAAGAA
12278195 TGGGTATTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
60 31 0.62
61 19 0.38
ACGTcount: A:0.43, C:0.03, G:0.16, T:0.38
Consensus pattern (61 bp):
TATTTCCATAATTATGATAGGAAAGATAATATAGTAATTTTGATTAATAATAAAAGAAAAG
Found at i:12279557 original size:15 final size:14
Alignment explanation
Indices: 12279519--12279558 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 14
12279509 TTGTTAATTA
12279519 TTATATTTT-TTTG
1 TTATATTTTATTTG
*
12279532 TTATATATTATTTG
1 TTATATTTTATTTG
12279546 TTAATATTTTATT
1 TT-ATATTTTATT
12279559 ATTTCATTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 8 0.35
14 6 0.26
15 9 0.39
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (14 bp):
TTATATTTTATTTG
Found at i:12279696 original size:15 final size:16
Alignment explanation
Indices: 12279650--12279712 Score: 60
Period size: 16 Copynumber: 3.9 Consensus size: 16
12279640 ACTAGTTTGG
12279650 TAAATCATATTATCTTTT
1 TAAAT-ATATTAT-TTTT
*
12279668 TAACTA-ATTCATTTTT
1 TAAATATATT-ATTTTT
*
12279684 TATAT-TATTA-TTTT
1 TAAATATATTATTTTT
12279698 TAAATATATTATTTT
1 TAAATATATTATTTT
12279713 ATGAGATTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
14 8 0.22
15 6 0.16
16 16 0.43
17 3 0.08
18 4 0.11
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.60
Consensus pattern (16 bp):
TAAATATATTATTTTT
Found at i:12279697 original size:14 final size:15
Alignment explanation
Indices: 12279680--12279712 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
12279670 ACTAATTCAT
*
12279680 TTTTTATAT-TATTA
1 TTTTTAAATATATTA
12279694 TTTTTAAATATATTA
1 TTTTTAAATATATTA
12279709 TTTT
1 TTTT
12279713 ATGAGATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTTAAATATATTA
Found at i:12280353 original size:68 final size:68
Alignment explanation
Indices: 12280244--12280381 Score: 267
Period size: 68 Copynumber: 2.0 Consensus size: 68
12280234 CATAATAATC
*
12280244 TAGGCAAAAGGTAAATGATACTCTTATTGCTATTGGTCATGCTAATGAACTGGGTGAATGTTGAA
1 TAGGCAAAAGGTAAATGACACTCTTATTGCTATTGGTCATGCTAATGAACTGGGTGAATGTTGAA
12280309 TAG
66 TAG
12280312 TAGGCAAAAGGTAAATGACACTCTTATTGCTATTGGTCATGCTAATGAACTGGGTGAATGTTGAA
1 TAGGCAAAAGGTAAATGACACTCTTATTGCTATTGGTCATGCTAATGAACTGGGTGAATGTTGAA
12280377 TAG
66 TAG
12280380 TA
1 TA
12280382 TATCACATCC
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 69 1.00
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.32
Consensus pattern (68 bp):
TAGGCAAAAGGTAAATGACACTCTTATTGCTATTGGTCATGCTAATGAACTGGGTGAATGTTGAA
TAG
Found at i:12286900 original size:27 final size:27
Alignment explanation
Indices: 12286870--12286930 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
12286860 GCATCCTCAT
*
12286870 TCTCATAAAAAGATATTTCATGATTTA
1 TCTCACAAAAAGATATTTCATGATTTA
12286897 TCTCACAAAAAGATATTTCATGATTTA
1 TCTCACAAAAAGATATTTCATGATTTA
12286924 TCTCACA
1 TCTCACA
12286931 TCTACTTGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.39, C:0.16, G:0.07, T:0.38
Consensus pattern (27 bp):
TCTCACAAAAAGATATTTCATGATTTA
Found at i:12293981 original size:160 final size:160
Alignment explanation
Indices: 12293716--12294037 Score: 511
Period size: 160 Copynumber: 2.0 Consensus size: 160
12293706 AATTTAAGAA
* *
12293716 AATACTTTAATGCAATTATGATCCCATAATTACAATCTTATTATAATTCCCTTCCAAAACATATT
1 AATACTTTAATGCAATGATAATCCCATAATTACAATCTTATTATAATTCCCTTCCAAAACATATT
*
12293781 TATAACAAAGACTTTATCTATGAAAAGTAAGTAATATTATTATGTGTATACAATCTTATAGATAA
66 TATAACAAAGACTTTATCTATGAAAAGTAAGTAATATTATTATGTGTATACAATCTCATAGATAA
*
12293846 AGAATGCCTTTGATAATGATAGAAATGCAT
131 AGAATGCCTTTGATAATGATAGAAATACAT
** * * * *
12293876 AATACTTTAATGCAATGATAATCGTATAATTACAATCTTATTGTAATTCCTTTGCAAAGCATATT
1 AATACTTTAATGCAATGATAATCCCATAATTACAATCTTATTATAATTCCCTTCCAAAACATATT
* * *
12293941 TATTACAAAGACTTTATTTAT-AAAACGTAAGTATTATTATTATGTGTATACAATCTCATAGATA
66 TATAACAAAGACTTTATCTATGAAAA-GTAAGTAATATTATTATGTGTATACAATCTCATAGATA
12294005 AAGAATGCCTTTGATAATGATAGAAATACAT
130 AAGAATGCCTTTGATAATGATAGAAATACAT
12294036 AA
1 AA
12294038 CATGACATAT
Statistics
Matches: 148, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
159 4 0.03
160 144 0.97
ACGTcount: A:0.41, C:0.12, G:0.10, T:0.37
Consensus pattern (160 bp):
AATACTTTAATGCAATGATAATCCCATAATTACAATCTTATTATAATTCCCTTCCAAAACATATT
TATAACAAAGACTTTATCTATGAAAAGTAAGTAATATTATTATGTGTATACAATCTCATAGATAA
AGAATGCCTTTGATAATGATAGAAATACAT
Found at i:12316546 original size:44 final size:44
Alignment explanation
Indices: 12316483--12316570 Score: 140
Period size: 44 Copynumber: 2.0 Consensus size: 44
12316473 TATACATTGA
*
12316483 ATTAGTAAAAGTGCCCTAGATCACCTGTCAGAGCTATATTAAAG
1 ATTAGTAAAAGTGACCTAGATCACCTGTCAGAGCTATATTAAAG
* * *
12316527 ATTAGTAAAAGTGACCTAGATTACCTGTTAGAGCTATTTTAAAG
1 ATTAGTAAAAGTGACCTAGATCACCTGTCAGAGCTATATTAAAG
12316571 CTAGTTATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (44 bp):
ATTAGTAAAAGTGACCTAGATCACCTGTCAGAGCTATATTAAAG
Done.