Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14313602
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 50000 characters in sequence are not A, C, G, or T
File 66 of 74
Found at i:13093529 original size:18 final size:17
Alignment explanation
Indices: 13093506--13093555 Score: 50
Period size: 18 Copynumber: 3.0 Consensus size: 17
13093496 GAGAGAAGAG
* *
13093506 GAGGAGAGGGAGAAGGA
1 GAGGAGAAGGAGAGGGA
*
13093523 GAGGGAGAAGGACAGGGA
1 GA-GGAGAAGGAGAGGGA
13093541 GA-GAGAA-GAGAGGGA
1 GAGGAGAAGGAGAGGGA
13093556 AAGAGAAAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
15 7 0.25
16 5 0.18
17 2 0.07
18 14 0.50
ACGTcount: A:0.42, C:0.02, G:0.56, T:0.00
Consensus pattern (17 bp):
GAGGAGAAGGAGAGGGA
Found at i:13093575 original size:6 final size:6
Alignment explanation
Indices: 13093554--13093585 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
13093544 AGAAGAGAGG
*
13093554 GAAAGA GAAAGA GAAAGA GAAAGG GAAAGA GA
1 GAAAGA GAAAGA GAAAGA GAAAGA GAAAGA GA
13093586 TTATAATGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (6 bp):
GAAAGA
Found at i:13099917 original size:13 final size:13
Alignment explanation
Indices: 13099899--13099925 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
13099889 AAACCCGGCG
13099899 CGGTTTATTTTTA
1 CGGTTTATTTTTA
13099912 CGGTTTATTTTTA
1 CGGTTTATTTTTA
13099925 C
1 C
13099926 TTGCCTTTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.11, G:0.15, T:0.59
Consensus pattern (13 bp):
CGGTTTATTTTTA
Found at i:13100430 original size:16 final size:17
Alignment explanation
Indices: 13100389--13100430 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
13100379 ATGAATATTA
*
13100389 AATTATTTA-AAATTTT
1 AATTATATATAAATTTT
*
13100405 TATTATATATAAATTTT
1 AATTATATATAAATTTT
13100422 AATTA-ATAT
1 AATTATATAT
13100431 CATTAATGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 11 0.50
17 11 0.50
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
AATTATATATAAATTTT
Found at i:13101205 original size:24 final size:24
Alignment explanation
Indices: 13101160--13101205 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
13101150 AAATTTGATC
* *
13101160 TAAATTTAATATATATTTAATATT
1 TAAATTTAATATAAATTAAATATT
*
13101184 TAAATTTAATTTAAATTAAATA
1 TAAATTTAATATAAATTAAATA
13101206 AAAAAATTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (24 bp):
TAAATTTAATATAAATTAAATATT
Found at i:13101232 original size:19 final size:19
Alignment explanation
Indices: 13101160--13101233 Score: 66
Period size: 19 Copynumber: 4.1 Consensus size: 19
13101150 AAATTTGATC
13101160 TAAATTTAATA-TAT-ATT
1 TAAATTTAATATTATAATT
13101177 TAATATTTAA-ATT-TAATT
1 TAA-ATTTAATATTATAATT
* ** *
13101195 TAAATTAAATAAAAAAATT
1 TAAATTTAATATTATAATT
*
13101214 TAAATTGAATATTATAATT
1 TAAATTTAATATTATAATT
13101233 T
1 T
13101234 TAAAATAATT
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
17 10 0.23
18 14 0.32
19 20 0.45
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (19 bp):
TAAATTTAATATTATAATT
Found at i:13102093 original size:18 final size:17
Alignment explanation
Indices: 13102072--13102105 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
13102062 AATTCACGAG
13102072 TTTAATTAAATTTTTATA
1 TTTAA-TAAATTTTTATA
*
13102090 TTTAATATATTTTTAT
1 TTTAATAAATTTTTAT
13102106 TTTTTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTAATAAATTTTTATA
Found at i:13110601 original size:18 final size:18
Alignment explanation
Indices: 13110578--13110636 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
13110568 TTTAATAATA
13110578 AATATTTTTATATAAAAT
1 AATATTTTTATATAAAAT
13110596 AATATTTTT-TA-ACAATAT
1 AATATTTTTATATA-AA-AT
*
13110614 AAATATTTTTA-ATATAAT
1 -AATATTTTTATATAAAAT
13110632 AATAT
1 AATAT
13110637 ATTACAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 11
0.74 0.02 0.23
Matches are distributed among these distances:
16 1 0.03
17 9 0.26
18 13 0.37
19 11 0.31
20 1 0.03
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (18 bp):
AATATTTTTATATAAAAT
Found at i:13110630 original size:15 final size:16
Alignment explanation
Indices: 13110568--13110627 Score: 57
Period size: 18 Copynumber: 3.4 Consensus size: 16
13110558 ATTTTTATGA
13110568 TTTAATAATAAATATT
1 TTTAATAATAAATATT
*
13110584 TTTATATAAAATAATATTT
1 TTTA-ATAATA-AATA-TT
*
13110603 TTTAACAATATAAATATT
1 TTTAA-TA-ATAAATATT
13110621 TTTAATA
1 TTTAATA
13110628 TAATAATATA
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
16 4 0.11
17 6 0.17
18 12 0.34
19 11 0.31
20 2 0.06
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (16 bp):
TTTAATAATAAATATT
Found at i:13112319 original size:2 final size:2
Alignment explanation
Indices: 13112312--13112347 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
13112302 CTGATTACTA
13112312 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
13112348 TCTTATGACA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:13113842 original size:25 final size:26
Alignment explanation
Indices: 13113782--13113842 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 26
13113772 AAAAACCAAT
13113782 TAATTAATTTAATTTAAAAAAATAAAA
1 TAATTAA-TTAATTTAAAAAAATAAAA
* * * *
13113809 AAATT-ATTAATTTTAAACAA-AATA
1 TAATTAATTAATTTAAAAAAATAAAA
13113833 TAATTAATTA
1 TAATTAATTA
13113843 GAATAATAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
24 7 0.25
25 16 0.57
26 1 0.04
27 4 0.14
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (26 bp):
TAATTAATTAATTTAAAAAAATAAAA
Found at i:13115563 original size:61 final size:59
Alignment explanation
Indices: 13115375--13115729 Score: 405
Period size: 61 Copynumber: 5.9 Consensus size: 59
13115365 ATTTACACAA
* * * *
13115375 AAAAATTGATATTTTCAA-CTTTTCTTCAAAAATACTTTTTCGAAATTGTTATTTTTAAG
1 AAAAATTGATACTTTCAACCTTTTC-TCAAAAATACTTTTTTGAAATTTTTATTTTCAAG
* * *
13115434 AAAAATTGATATTTTCAACTTTTTCTCAAAAATACTTTTTTAAAATTTTTATTTTCAA-
1 AAAAATTGATACTTTCAACCTTTTCTCAAAAATACTTTTTTGAAATTTTTATTTTCAAG
*
13115492 AGAAAGTTGATACTTTCAACCTTTTCTCAAAAATACCTTTTTTTGAAATTTTTATTTTCAAG
1 A-AAAATTGATACTTTCAACCTTTTCTCAAAAATA-C-TTTTTTGAAATTTTTATTTTCAAG
* * * *
13115554 AAAAATTGATACTTTCAACTTTTTTTCAAAAATACCTTTTTACGAAATTTTTACCTTT-AAG
1 AAAAATTGATACTTTCAACCTTTTCTCAAAAATA-CTTTTT-TGAAATTTTTA-TTTTCAAG
* * * *
13115615 GAAAATTGATACTTTCAACTTTTTCTCAAAAATA-TCTTTTGAAATTTTTATTTTTAAG
1 AAAAATTGATACTTTCAACCTTTTCTCAAAAATACTTTTTTGAAATTTTTATTTTCAAG
* * **
13115673 AAAAATTGATACTTTTAA-CTTTTCCTTAAAATATTTTTCTTTTGAAATTTTTATTTT
1 AAAAATTGATACTTTCAACCTTTT-CTCAAAA-ATACTT-TTTTGAAATTTTTATTTT
13115730 TGGTATTATA
Statistics
Matches: 259, Mismatches: 25, Indels: 22
0.85 0.08 0.07
Matches are distributed among these distances:
57 7 0.03
58 36 0.14
59 83 0.32
60 12 0.05
61 117 0.45
62 4 0.02
ACGTcount: A:0.35, C:0.12, G:0.05, T:0.48
Consensus pattern (59 bp):
AAAAATTGATACTTTCAACCTTTTCTCAAAAATACTTTTTTGAAATTTTTATTTTCAAG
Found at i:13119477 original size:305 final size:305
Alignment explanation
Indices: 13119126--13119732 Score: 864
Period size: 305 Copynumber: 2.0 Consensus size: 305
13119116 GCTCAAAACG
* * ** * *
13119126 CCTTTAATATTCCAGATAATAAATTTTAATGGTTGAATTATTGAAGGCGGTTATATCTAAAAATG
1 CCTTTAATATTCCAGACAATAAATTTTAATGATCAAATTATTGAAGGCGATTATATCCAAAAATG
*
13119191 -CATTCAATAACATTTTGTTA-GGAATTATTCAAGGCATTACCCGTAGAAAAATGCCATTCATAA
66 TC-TTCAATAACATTTTGTTATGG-ATTATTCAAGGCATTACCCATAGAAAAATGCCATTCATAA
* **
13119254 TCCATTCGATTAATTTTTAGTTTGTATTATTGAAGGTA-TTTTTTAAAATGCCTTCAATAATTTA
129 TCCATTCGATTAATTTTTAGTTGGTATTATTGAAGGTATTTTTTTAAAATGCCTTCAATAATCCA
* * * *
13119318 TACAAAAAAGACAAAACAGATTCTTGAAGGTATTTTTTGTCCAAAATGCCTTTAATATTCAACAC
194 TACAAAAAAGACAAAACAGATTCTTAAAGGCATTTTTTGCCCAAAACGCCTTTAATATTC-ACAC
* *
13119383 AATAAATTTTAAGGGG-GATTATTGAATGCGATTTT-GATAAAAAAAATA
258 AATAAATTTT-AGGGGTGATTATTGAAGGAGATTTTAG-TAAAAAAAATA
* * *
13119431 CCTTTAATATTTCAGACGATAAATTTTAATGATCAAATTATTGAAGGCGATTATATCCAGAAATG
1 CCTTTAATATTCCAGACAATAAATTTTAATGATCAAATTATTGAAGGCGATTATATCCAAAAATG
* *
13119496 TCTTCAATAATATTTTGTTATGGATTATTCAAGGCATTACCCATAGAAAAATGCCCTTCATAATC
66 TCTTCAATAACATTTTGTTATGGATTATTCAAGGCATTACCCATAGAAAAATGCCATTCATAATC
13119561 CATTCGATTAATTTTTAGTTGGTATTATTGAAGGTATTTTTTTAAAATGCCTTCAATAATCCATA
131 CATTCGATTAATTTTTAGTTGGTATTATTGAAGGTATTTTTTTAAAATGCCTTCAATAATCCATA
* * * * * * * *
13119626 TAAAAAAGATAAGACGGATTCTTAAATGCGTTTTTTGCCCAAAACGCCTTTAATATTCATATAAT
196 CAAAAAAGACAAAACAGATTCTTAAAGGCATTTTTTGCCCAAAACGCCTTTAATATTCACACAAT
*
13119691 AAATTTTTGGGGTGATTATTGAAGGAGATTTTAGTAAAAAAA
261 AAATTTTAGGGGTGATTATTGAAGGAGATTTTAGTAAAAAAA
13119733 CACCTTCAAT
Statistics
Matches: 267, Mismatches: 30, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
304 4 0.01
305 185 0.69
306 78 0.29
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (305 bp):
CCTTTAATATTCCAGACAATAAATTTTAATGATCAAATTATTGAAGGCGATTATATCCAAAAATG
TCTTCAATAACATTTTGTTATGGATTATTCAAGGCATTACCCATAGAAAAATGCCATTCATAATC
CATTCGATTAATTTTTAGTTGGTATTATTGAAGGTATTTTTTTAAAATGCCTTCAATAATCCATA
CAAAAAAGACAAAACAGATTCTTAAAGGCATTTTTTGCCCAAAACGCCTTTAATATTCACACAAT
AAATTTTAGGGGTGATTATTGAAGGAGATTTTAGTAAAAAAAATA
Found at i:13123097 original size:25 final size:25
Alignment explanation
Indices: 13123076--13123123 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
13123066 GTGCTCAAAT
*
13123076 ACACCCTTCAGCAAACCACTCAGAA
1 ACACCATTCAGCAAACCACTCAGAA
* *
13123101 ACATCATTCAGCAAACCATTCAG
1 ACACCATTCAGCAAACCACTCAG
13123124 CATACGATTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.40, C:0.35, G:0.08, T:0.17
Consensus pattern (25 bp):
ACACCATTCAGCAAACCACTCAGAA
Found at i:13123134 original size:12 final size:12
Alignment explanation
Indices: 13123082--13123125 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
13123072 AAATACACCC
13123082 TTCAGCAAACCA
1 TTCAGCAAACCA
*
13123094 CTCAG-AAACATCA
1 TTCAGCAAAC--CA
13123107 TTCAGCAAACCA
1 TTCAGCAAACCA
13123119 TTCAGCA
1 TTCAGCA
13123126 TACGATTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
11 4 0.15
12 13 0.48
13 6 0.22
14 4 0.15
ACGTcount: A:0.41, C:0.32, G:0.09, T:0.18
Consensus pattern (12 bp):
TTCAGCAAACCA
Found at i:13123343 original size:80 final size:79
Alignment explanation
Indices: 13123113--13123357 Score: 249
Period size: 80 Copynumber: 3.1 Consensus size: 79
13123103 ATCATTCAGC
* * *
13123113 AAACCATTCAGCATACGATTCAACCCCTCAATATCATACAAAACCATTTAA-CAAAATAATATCA
1 AAACCATTCAGCATATGATTCAACCCCTCAATATCATACAATACCA-TTAAGCAAAACAATATCA
* *
13123177 AACAATAAGGTTCAG
65 AACAACAAGGTTTAG
* * * * * * * ** * * *
13123192 CAAGCATTCATCATATAATTTAGCCCTTCAATATCATACAATACCATTTGGCAATACAATATTAG
1 AAACCATTCAGCATATGATTCAACCCCTCAATATCATACAATACCATTAAGCAAAACAATATCAA
*
13123257 GCAACAAGGTTTAG
66 ACAACAAGGTTTAG
* * *
13123271 TAAACCAGTCAGCATATGATTCAACCCCCCAATATCATATAATACCATTAAGCAAAACAATATCA
1 -AAACCATTCAGCATATGATTCAACCCCTCAATATCATACAATACCATTAAGCAAAACAATATCA
* *
13123336 AATAACAAGATTTAG
65 AACAACAAGGTTTAG
13123351 CAAACCA
1 -AAACCA
13123358 CAATATTTAA
Statistics
Matches: 127, Mismatches: 37, Indels: 3
0.76 0.22 0.02
Matches are distributed among these distances:
78 2 0.02
79 58 0.46
80 67 0.53
ACGTcount: A:0.44, C:0.23, G:0.08, T:0.25
Consensus pattern (79 bp):
AAACCATTCAGCATATGATTCAACCCCTCAATATCATACAATACCATTAAGCAAAACAATATCAA
ACAACAAGGTTTAG
Found at i:13127654 original size:15 final size:15
Alignment explanation
Indices: 13127634--13127663 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
13127624 AAAAACATCT
*
13127634 TTTTGATGGAATTAA
1 TTTTGATGAAATTAA
13127649 TTTTGATGAAATTAA
1 TTTTGATGAAATTAA
13127664 AGAGTTGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.47
Consensus pattern (15 bp):
TTTTGATGAAATTAA
Found at i:13134313 original size:2 final size:2
Alignment explanation
Indices: 13134306--13134340 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
13134296 AGGCGAGGGC
*
13134306 AT AT AT AT AT AT AT AT AT AT AT AT -T AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13134341 CCTTCCTGCT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
AT
Found at i:13135603 original size:17 final size:18
Alignment explanation
Indices: 13135577--13135614 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
13135567 ATTACCAGAA
*
13135577 AAAATGAAAAA-AAATAT
1 AAAATAAAAAATAAATAT
*
13135594 AAAATAAAAAATAGATAT
1 AAAATAAAAAATAAATAT
13135612 AAA
1 AAA
13135615 TGTTGGATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.18
Consensus pattern (18 bp):
AAAATAAAAAATAAATAT
Found at i:13135604 original size:16 final size:19
Alignment explanation
Indices: 13135577--13135614 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
13135567 ATTACCAGAA
13135577 AAAATGAAAAAA-A-ATAT
1 AAAATGAAAAAATAGATAT
13135594 AAAAT-AAAAAATAGATAT
1 AAAATGAAAAAATAGATAT
13135612 AAA
1 AAA
13135615 TGTTGGATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 6 0.32
17 6 0.32
18 7 0.37
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.18
Consensus pattern (19 bp):
AAAATGAAAAAATAGATAT
Found at i:13136955 original size:2 final size:2
Alignment explanation
Indices: 13136948--13136975 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
13136938 CAAATATTAA
13136948 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13136976 TAGATTCGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13137066 original size:18 final size:18
Alignment explanation
Indices: 13137043--13137077 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
13137033 CAAATTATAT
*
13137043 ATATTTTTTAATTTTTAG
1 ATATTTTTAAATTTTTAG
13137061 ATATTTTTAAATTTTTA
1 ATATTTTTAAATTTTTA
13137078 TAAAATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (18 bp):
ATATTTTTAAATTTTTAG
Found at i:13137158 original size:14 final size:14
Alignment explanation
Indices: 13137113--13137158 Score: 51
Period size: 13 Copynumber: 3.4 Consensus size: 14
13137103 AAAAATTTAT
13137113 TTAAATATATTAAAA
1 TTAAATATA-TAAAA
**
13137128 TTTTATAT-TAAAA
1 TTAAATATATAAAA
13137141 -TAAATATATAAAA
1 TTAAATATATAAAA
13137154 TTAAA
1 TTAAA
13137159 AATTAAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
12 5 0.20
13 10 0.40
14 4 0.16
15 6 0.24
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
TTAAATATATAAAA
Found at i:13137168 original size:27 final size:27
Alignment explanation
Indices: 13137114--13137166 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
13137104 AAAATTTATT
** *
13137114 TAAATATATTAAAATTTTATATTAAAA
1 TAAATATATTAAAATTAAAAATTAAAA
13137141 TAAATATA-TAAAATTAAAAATTAAAA
1 TAAATATATTAAAATTAAAAATTAAAA
13137167 ATCGATAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (27 bp):
TAAATATATTAAAATTAAAAATTAAAA
Found at i:13138253 original size:15 final size:15
Alignment explanation
Indices: 13138233--13138277 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
13138223 TAAAATTTTT
13138233 ATTTTATATATATGA
1 ATTTTATATATATGA
* *
13138248 ATTTTATATAAATTA
1 ATTTTATATATATGA
*
13138263 ATTCATATATATATG
1 ATT-TTATATATATG
13138278 CAAATTAAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
15 16 0.67
16 8 0.33
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.51
Consensus pattern (15 bp):
ATTTTATATATATGA
Found at i:13138336 original size:13 final size:13
Alignment explanation
Indices: 13138314--13138363 Score: 64
Period size: 13 Copynumber: 3.7 Consensus size: 13
13138304 TTTTATTAAA
*
13138314 TTTAAATTTTATT
1 TTTAATTTTTATT
13138327 TTTAATTTTTATAT
1 TTTAATTTTTAT-T
*
13138341 ATATAATTTTTATT
1 -TTTAATTTTTATT
13138355 TTTAATTTT
1 TTTAATTTT
13138364 GATACATATA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
13 19 0.59
14 2 0.06
15 11 0.34
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTAATTTTTATT
Found at i:13138351 original size:28 final size:28
Alignment explanation
Indices: 13138320--13138373 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
13138310 TAAATTTAAA
* *
13138320 TTTTATTTTTAATTTTTATATATATAAT
1 TTTTATTTTTAATTTTGATACATATAAT
13138348 TTTTATTTTTAATTTTGATACATATA
1 TTTTATTTTTAATTTTGATACATATA
13138374 TGAATTAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (28 bp):
TTTTATTTTTAATTTTGATACATATAAT
Found at i:13138414 original size:20 final size:19
Alignment explanation
Indices: 13138370--13138465 Score: 65
Period size: 20 Copynumber: 4.9 Consensus size: 19
13138360 TTTTGATACA
* *
13138370 TATATGAATTAAATATAAT
1 TATATAAATTAAATTTAAT
13138389 CT-TATTAAATTAAATTTAAT
1 -TATA-TAAATTAAATTTAAT
*
13138409 TATATTTTAAA--AAATTTTAT
1 TATA---TAAATTAAATTTAAT
*
13138429 TATATGAATTAAATTTAAT
1 TATATAAATTAAATTTAAT
*
13138448 GA-ATAAATTTAAATTTAA
1 TATATAAA-TTAAATTTAA
13138466 ACTTTTTTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 15
0.74 0.08 0.18
Matches are distributed among these distances:
17 3 0.05
18 4 0.06
19 22 0.35
20 28 0.45
22 5 0.08
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (19 bp):
TATATAAATTAAATTTAAT
Found at i:13142888 original size:2 final size:2
Alignment explanation
Indices: 13142881--13142916 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
13142871 GTATCTTGAC
13142881 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13142917 GGGTTTGTGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13143920 original size:29 final size:28
Alignment explanation
Indices: 13143888--13143961 Score: 69
Period size: 29 Copynumber: 2.6 Consensus size: 28
13143878 AGTTATAATG
* * *
13143888 AAATATTTAATATAATATTTTAACTTTAA
1 AAATATTTAAT-TAATATTTAAAATATAA
* *
13143917 AAATCTTTGATTTAATATTTAAAATATAA
1 AAATATTT-AATTAATATTTAAAATATAA
*
13143946 ATATA-TTAATTAATAT
1 AAATATTTAATTAATAT
13143962 GGCTGGTTTC
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
27 8 0.22
28 2 0.06
29 24 0.67
30 2 0.06
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (28 bp):
AAATATTTAATTAATATTTAAAATATAA
Found at i:13146789 original size:17 final size:18
Alignment explanation
Indices: 13146766--13146807 Score: 77
Period size: 17 Copynumber: 2.4 Consensus size: 18
13146756 TAGTTGGTAT
13146766 AATTATTATATATGCTTG
1 AATTATTATATATGCTTG
13146784 -ATTATTATATATGCTTG
1 AATTATTATATATGCTTG
13146801 AATTATT
1 AATTATT
13146808 GGTATAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 17 0.74
18 6 0.26
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.52
Consensus pattern (18 bp):
AATTATTATATATGCTTG
Found at i:13148552 original size:4 final size:4
Alignment explanation
Indices: 13148543--13148588 Score: 51
Period size: 4 Copynumber: 11.5 Consensus size: 4
13148533 CAAGTCAATG
*
13148543 TTTA TTTA TTTA TTTA TTTA -TTA -TTA TTTCTA CTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TT-TA TTTA TTTA TTTA TT
13148589 GATTAAATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
3 6 0.16
4 27 0.73
5 2 0.05
6 2 0.05
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (4 bp):
TTTA
Found at i:13148704 original size:60 final size:60
Alignment explanation
Indices: 13148647--13148956 Score: 345
Period size: 60 Copynumber: 5.2 Consensus size: 60
13148637 TGATTTTCCT
* *
13148647 AAAAT-AAAATTTTCAAAAAA-AATTAATTTAAAGAAAAAGTT-AAGAGTATTAATTTTTCTTG
1 AAAATAAAAATTTTCAAAAAAGAATT--TTTGAAG-AAAAGTTGAA-AGTATCAATTTTTCTTG
* *
13148708 AAAATAAAAATTTTCAAAAAAGCATTTTTGAAGAAAAGTTGAAAGTATCAATTTTTTTTTTG
1 AAAATAAAAATTTTCAAAAAAGAATTTTTGAAGAAAAGTTGAAAGTATCAA--TTTTTCTTG
* *
13148770 AAAATAAAAACTTTT-AAAAAAAATATTTTTGAAGAAAAGTTAAAAGTATCAATTTTTCTTG
1 AAAATAAAAA-TTTTCAAAAAAGA-ATTTTTGAAGAAAAGTTGAAAGTATCAATTTTTCTTG
*
13148831 AAAATAAAAATTTTCAAAAAAGCATTTTTG-AGAAAAAGTTGAAAGTATCAATTTTTCTTG
1 AAAATAAAAATTTTCAAAAAAGAATTTTTGAAG-AAAAGTTGAAAGTATCAATTTTTCTTG
* * * *
13148891 AAAAT-AAAA--TT-AAAAAA-ATATTTCTGAGGAAAAGTTAAAAATATCAA-TTTTCTTTG
1 AAAATAAAAATTTTCAAAAAAGA-ATTTTTGAAGAAAAGTTGAAAGTATCAATTTTTC-TTG
13148947 AAAATAAAAA
1 AAAATAAAAA
13148957 CCTTAAAATG
Statistics
Matches: 220, Mismatches: 16, Indels: 30
0.83 0.06 0.11
Matches are distributed among these distances:
55 5 0.02
56 36 0.16
57 7 0.03
59 6 0.03
60 56 0.25
61 37 0.17
62 39 0.18
63 34 0.15
ACGTcount: A:0.51, C:0.05, G:0.09, T:0.35
Consensus pattern (60 bp):
AAAATAAAAATTTTCAAAAAAGAATTTTTGAAGAAAAGTTGAAAGTATCAATTTTTCTTG
Found at i:13148811 original size:123 final size:119
Alignment explanation
Indices: 13148647--13148956 Score: 425
Period size: 123 Copynumber: 2.6 Consensus size: 119
13148637 TGATTTTCCT
* * * *
13148647 AAAATAAAATTTTCAAAAAAAAT-TAATTTAAAGAAAAAGTTAAGAGTATTAATTTTTCTTGAAA
1 AAAATAAAATTTT-AAAAAAAATAT-TTTTGAAG-AAAAGTTAAAAGTATCAATTTTTCTTGAAA
*
13148711 ATAAAAATTTTCAAAAAAGCATTTTTGA-AGAAAAGTTGAAAGTATCAATTTTTTTTTTG
63 ATAAAAATTTTCAAAAAAGCATTTTTGAGA-AAAAGTTGAAAGTATCAA--TTTTTCTTG
13148770 AAAATAAAAACTTTTAAAAAAAATATTTTTGAAGAAAAGTTAAAAGTATCAATTTTTCTTGAAAA
1 AAAAT-AAAA-TTTTAAAAAAAATATTTTTGAAGAAAAGTTAAAAGTATCAATTTTTCTTGAAAA
13148835 TAAAAATTTTCAAAAAAGCATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTG
64 TAAAAATTTTCAAAAAAGCATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTG
* * *
13148891 AAAATAAAA--TT-AAAAAAATATTTCTGAGGAAAAGTTAAAAATATCAA-TTTTCTTTGAAAAT
1 AAAATAAAATTTTAAAAAAAATATTTTTGAAGAAAAGTTAAAAGTATCAATTTTTC-TTGAAAAT
13148952 AAAAA
65 AAAAA
13148957 CCTTAAAATG
Statistics
Matches: 174, Mismatches: 8, Indels: 17
0.87 0.04 0.09
Matches are distributed among these distances:
115 5 0.03
116 46 0.26
117 2 0.01
120 4 0.02
121 13 0.07
123 79 0.45
124 20 0.11
125 5 0.03
ACGTcount: A:0.51, C:0.05, G:0.09, T:0.35
Consensus pattern (119 bp):
AAAATAAAATTTTAAAAAAAATATTTTTGAAGAAAAGTTAAAAGTATCAATTTTTCTTGAAAATA
AAAATTTTCAAAAAAGCATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTG
Found at i:13148965 original size:56 final size:56
Alignment explanation
Indices: 13148681--13148996 Score: 231
Period size: 60 Copynumber: 5.4 Consensus size: 56
13148671 AATTTAAAGA
* * * * * *
13148681 AAAAGTTAAGAGTATTAATTTTTCTTGAAAATAAAAATTTTCAAAAAAGCATTTTTGAAG
1 AAAAGTTAAAAATATCAATTTTTCTTGAAAATAAAAATATT---AAAA-TATTTTTGAGG
* * * * *
13148741 AAAAGTTGAAAGTATCAATTTTTTTTTTGAAAATAAAAACTTTTAAAAAAAATATTTTTGAAG
1 AAAAGTTAAAAATATCAA--TTTTTCTTGAAAATAAAAA-TATT----AAAATATTTTTGAGG
* * * *
13148804 AAAAGTTAAAAGTATCAATTTTTCTTGAAAATAAAAATTTTCAAAAAAGCATTTTTGAGA
1 AAAAGTTAAAAATATCAATTTTTCTTGAAAATAAAAATATT---AAAA-TATTTTTGAGG
* * * ** *
13148864 AAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAATTAAAAAAATATTTCTGAGG
1 AAAAGTTAAAAATATCAATTTTTCTTGAAAATAAAAATATTAAAATATTTTTGAGG
** ** *
13148920 AAAAGTTAAAAATATCAA-TTTTCTTTGAAAATAAAAACCTTAAAAT-GCTTTAAGG
1 AAAAGTTAAAAATATCAATTTTTC-TTGAAAATAAAAATATTAAAATATTTTTGAGG
*
13148975 AAAAGTTGAAAATATCAATTTT
1 AAAAGTTAAAAATATCAATTTT
13148997 CCTTATATAA
Statistics
Matches: 217, Mismatches: 32, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
55 27 0.12
56 44 0.20
57 4 0.02
59 6 0.03
60 63 0.29
61 18 0.08
62 18 0.08
63 31 0.14
64 6 0.03
ACGTcount: A:0.48, C:0.06, G:0.10, T:0.36
Consensus pattern (56 bp):
AAAAGTTAAAAATATCAATTTTTCTTGAAAATAAAAATATTAAAATATTTTTGAGG
Found at i:13153097 original size:19 final size:19
Alignment explanation
Indices: 13153055--13153097 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
13153045 AAAAATTTTA
*
13153055 AAAAAAGAAAAAATAAATG
1 AAAAAAGAAAAAATAAAAG
*
13153074 AAAAATGAAAAAATAAAAGG
1 AAAAAAGAAAAAATAAAA-G
13153094 AAAA
1 AAAA
13153098 CTCAAGTAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.09
Consensus pattern (19 bp):
AAAAAAGAAAAAATAAAAG
Found at i:13154151 original size:43 final size:43
Alignment explanation
Indices: 13154090--13154488 Score: 420
Period size: 43 Copynumber: 9.2 Consensus size: 43
13154080 GACATGATTA
*
13154090 TAGAGGAGCCTTATTTATTTTTCAAAGTGGTTGAACCTCTGTT
1 TAGAGGAGCCTTATTTATTTTTCAAAGTGGTTGAGCCTCTGTT
* * * *
13154133 TAGAGGAGCTTTATTTATTTTTTAAAAGTTGTTGAGCTTCTGTT
1 TAGAGGAGCCTTATTTA-TTTTTCAAAGTGGTTGAGCCTCTGTT
* ** * * * *
13154177 TAGAAGAGTTTTGTTTATTTTTCAAAAGTCGATGAGCCTTTGTT
1 TAGAGGAGCCTTATTTATTTTTC-AAAGTGGTTGAGCCTCTGTT
* * *
13154221 TAGAGGAGCTTTATTTATTTTTCAAAGTGGTTGAGTCTTTGTT
1 TAGAGGAGCCTTATTTATTTTTCAAAGTGGTTGAGCCTCTGTT
* * *
13154264 TAGAGGAGCCTTATTTATGTTTCAAAGTGGTTAAGCCTCTATT
1 TAGAGGAGCCTTATTTATTTTTCAAAGTGGTTGAGCCTCTGTT
* * * * * *
13154307 TAGATGAGCTTTGTTTATTTTTCAAAAGTAGTTAAACCTCTGTT
1 TAGAGGAGCCTTATTTATTTTTC-AAAGTGGTTGAGCCTCTGTT
* * * *
13154351 TAGAGGAGCCTTGTTTATTTTTCAAAGTCGTTGAGTCTCTGAT
1 TAGAGGAGCCTTATTTATTTTTCAAAGTGGTTGAGCCTCTGTT
* * * *
13154394 TAGAAGAACCTTATTTATTTTTCAAAGTGGTTGAGCATTTGTT
1 TAGAGGAGCCTTATTTATTTTTCAAAGTGGTTGAGCCTCTGTT
* * * ** *
13154437 TAAAGGAACCTTGTTTATTTTTCCAAAGTCATTAAGCCTCTGTT
1 TAGAGGAGCCTTATTTATTTTT-CAAAGTGGTTGAGCCTCTGTT
13154481 TAGAGGAG
1 TAGAGGAG
13154489 TTTTGTTTAT
Statistics
Matches: 295, Mismatches: 57, Indels: 7
0.82 0.16 0.02
Matches are distributed among these distances:
43 163 0.55
44 132 0.45
ACGTcount: A:0.25, C:0.11, G:0.20, T:0.44
Consensus pattern (43 bp):
TAGAGGAGCCTTATTTATTTTTCAAAGTGGTTGAGCCTCTGTT
Found at i:13154368 original size:130 final size:130
Alignment explanation
Indices: 13154090--13154488 Score: 505
Period size: 130 Copynumber: 3.1 Consensus size: 130
13154080 GACATGATTA
** *
13154090 TAGAGGAGCCTTATTTATTTTTCAAAGTGGTTGAACCTCTGTTTAGAGGAGCTTTATTTATTTTT
1 TAGAGGAGCCTTATTTATTTTTCAAAGTGGTTGAGTCTCTGTTTAGAGGAGCCTTATTTA-TTTT
* * * * * * * *
13154155 TAAAAGTTGTTGAGCTTCTGTTTAGAAGAGTTTTGTTTATTTTTCAAAAGTCGATGAGCCTTTGT
65 TCAAAGTGGTTGAGCATCTGTTTAGAAGAGCTTTGTTTATTTTTCAAAAGTAGTTAAGCCTCTGT
13154220 T
130 T
* * *
13154221 TAGAGGAGCTTTATTTATTTTTCAAAGTGGTTGAGTCTTTGTTTAGAGGAGCCTTATTTATGTTT
1 TAGAGGAGCCTTATTTATTTTTCAAAGTGGTTGAGTCTCTGTTTAGAGGAGCCTTATTTATTTTT
* * * * *
13154286 CAAAGTGGTTAAGCCTCTATTTAGATGAGCTTTGTTTATTTTTCAAAAGTAGTTAAACCTCTGTT
66 CAAAGTGGTTGAGCATCTGTTTAGAAGAGCTTTGTTTATTTTTCAAAAGTAGTTAAGCCTCTGTT
* * * * *
13154351 TAGAGGAGCCTTGTTTATTTTTCAAAGTCGTTGAGTCTCTGATTAGAAGAACCTTATTTATTTTT
1 TAGAGGAGCCTTATTTATTTTTCAAAGTGGTTGAGTCTCTGTTTAGAGGAGCCTTATTTATTTTT
* * * *
13154416 CAAAGTGGTTGAGCATTTGTTTA-AAGGAACCTTGTTTATTTTTCCAAAGTCA-TTAAGCCTCTG
66 CAAAGTGGTTGAGCATCTGTTTAGAA-GAGCTTTGTTTATTTTTCAAAAGT-AGTTAAGCCTCTG
13154479 TT
129 TT
13154481 TAGAGGAG
1 TAGAGGAG
13154489 TTTTGTTTAT
Statistics
Matches: 231, Mismatches: 35, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
129 1 0.00
130 174 0.75
131 56 0.24
ACGTcount: A:0.25, C:0.11, G:0.20, T:0.44
Consensus pattern (130 bp):
TAGAGGAGCCTTATTTATTTTTCAAAGTGGTTGAGTCTCTGTTTAGAGGAGCCTTATTTATTTTT
CAAAGTGGTTGAGCATCTGTTTAGAAGAGCTTTGTTTATTTTTCAAAAGTAGTTAAGCCTCTGTT
Found at i:13156020 original size:61 final size:61
Alignment explanation
Indices: 13155793--13156115 Score: 385
Period size: 60 Copynumber: 5.3 Consensus size: 61
13155783 TTTTTCAATG
* * *
13155793 ATTTTTC-T-AAAAT-AAAATTTTCAAAAAAAAATCATTTTTAAGGAAAAATTGAAAGTATTA
1 ATTTTTCTTGAAAATAAAAATTTTC-AAAAAAAAT-ATTTTTGAGGAAAAGTTGAAAGTATCA
** *
13155853 ATTTTTCTTGAAAATAAAAATTTT-TTAAAAAATCA-TTTTGAGGCAAAGTTGAAAGTATCA
1 ATTTTTCTTGAAAATAAAAATTTTCAAAAAAAAT-ATTTTTGAGGAAAAGTTGAAAGTATCA
* ** *
13155913 ATTTTTCTTAAAAATAAAAATTTTC-AAAAAAGCATTTTTGAAGAAAAGTTGAAAGTATCA
1 ATTTTTCTTGAAAATAAAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCA
* *
13155973 ATTTTTCTTTAAAATAAAAATTTTCAAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCA
1 ATTTTTCTTGAAAATAAAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCA
* * *
13156034 ATTTTTCTTGAAAAT-AAAA--TTAAAAAAAAATATTTCTGAGGAAAAGTTAAAAGTATCA
1 ATTTTTCTTGAAAATAAAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCA
*
13156092 ATTTTCCTTAGAAAAGTTAAAAAT
1 ATTTTTCTT-GAAAA--TAAAAAT
13156116 ATCAATTTTT
Statistics
Matches: 231, Mismatches: 21, Indels: 19
0.85 0.08 0.07
Matches are distributed among these distances:
58 43 0.19
59 6 0.03
60 107 0.46
61 58 0.25
62 9 0.04
63 8 0.03
ACGTcount: A:0.48, C:0.06, G:0.10, T:0.36
Consensus pattern (61 bp):
ATTTTTCTTGAAAATAAAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCA
Found at i:13156039 original size:28 final size:28
Alignment explanation
Indices: 13156008--13156127 Score: 86
Period size: 28 Copynumber: 4.2 Consensus size: 28
13155998 AAAAAAAGTA
*
13156008 TTTTTGAGGAAAAGTTGAAAGTATCAATT
1 TTTTTGAGGAAAAGTTAAAAGTATCAA-T
** * **
13156037 TTTCTTGAAAATAAAATTAAAA--AAAAAT
1 TTT-TTGAGGA-AAAGTTAAAAGTATCAAT
*
13156065 ATTTCTGAGGAAAAGTTAAAAGTATCAAT
1 -TTTTTGAGGAAAAGTTAAAAGTATCAAT
*
13156094 TTTCCTT-A-GAAAAGTTAAAAATATCAAT
1 TTT--TTGAGGAAAAGTTAAAAGTATCAAT
13156122 TTTTTG
1 TTTTTG
13156128 TATAAAAGCA
Statistics
Matches: 69, Mismatches: 14, Indels: 18
0.68 0.14 0.18
Matches are distributed among these distances:
26 2 0.03
27 9 0.13
28 30 0.43
29 14 0.20
30 6 0.09
31 8 0.12
ACGTcount: A:0.45, C:0.06, G:0.12, T:0.37
Consensus pattern (28 bp):
TTTTTGAGGAAAAGTTAAAAGTATCAAT
Found at i:13166980 original size:2 final size:2
Alignment explanation
Indices: 13166973--13166999 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
13166963 AAATTTTGAT
13166973 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
13167000 GAGATTAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:13169839 original size:19 final size:19
Alignment explanation
Indices: 13169812--13169849 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
13169802 ATGGGATTGA
*
13169812 ATTATTAAAAACTCTTAAT
1 ATTACTAAAAACTCTTAAT
*
13169831 ATTACTAAAAACTTTTAAT
1 ATTACTAAAAACTCTTAAT
13169850 TTTTAAGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (19 bp):
ATTACTAAAAACTCTTAAT
Found at i:13171720 original size:21 final size:21
Alignment explanation
Indices: 13171694--13171735 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
13171684 TGACTGCAAA
13171694 AGAATCATATAGCTCTTTCAT
1 AGAATCATATAGCTCTTTCAT
13171715 AGAATCATATAGCTCTTTCAT
1 AGAATCATATAGCTCTTTCAT
13171736 TTCTTCGTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.38
Consensus pattern (21 bp):
AGAATCATATAGCTCTTTCAT
Found at i:13181614 original size:14 final size:15
Alignment explanation
Indices: 13181588--13181617 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
13181578 ATTAAATAAA
13181588 AATTTTATTTAATTT
1 AATTTTATTTAATTT
13181603 AATTTT-TTTAATTT
1 AATTTTATTTAATTT
13181617 A
1 A
13181618 TAAAATTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
AATTTTATTTAATTT
Found at i:13187711 original size:14 final size:13
Alignment explanation
Indices: 13187675--13187714 Score: 55
Period size: 12 Copynumber: 3.1 Consensus size: 13
13187665 TGTTAATAAA
13187675 ATATTAAAATTTT
1 ATATTAAAATTTT
*
13187688 A-ATTATAATTATT
1 ATATTAAAATT-TT
13187701 ATATTAAAATTTT
1 ATATTAAAATTTT
13187714 A
1 A
13187715 ATAATTTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
12 8 0.35
13 7 0.30
14 8 0.35
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
ATATTAAAATTTT
Found at i:13188761 original size:27 final size:27
Alignment explanation
Indices: 13188731--13188782 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
13188721 ATGTATTCAT
* *
13188731 AATTTAAGTATTATATTAAAAATTTTA
1 AATTTAAATAATATATTAAAAATTTTA
*
13188758 AATTTAAATAATATATTAAATATTT
1 AATTTAAATAATATATTAAAAATTT
13188783 CATTATAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (27 bp):
AATTTAAATAATATATTAAAAATTTTA
Found at i:13190090 original size:40 final size:40
Alignment explanation
Indices: 13190044--13190177 Score: 155
Period size: 40 Copynumber: 3.4 Consensus size: 40
13190034 ATAAACCAAT
13190044 TTTTTGAATGATTTCTAAAACCTTT-AAATAGAATTTTAAA
1 TTTTTGAATGATTTCTAAAA-CTTTCAAATAGAATTTTAAA
* *
13190084 TTTTTGAATGATTTCTAAGACTTTCAAGTAGAATTTTAAA
1 TTTTTGAATGATTTCTAAAACTTTCAAATAGAATTTTAAA
* * ** *
13190124 TTTTTGAATGATTT-TCAAGATTTTCAGGTAGAAATTTAAA
1 TTTTTGAATGATTTCT-AAAACTTTCAAATAGAATTTTAAA
* *
13190164 TTTTTTAAAGATTT
1 TTTTTGAATGATTT
13190178 TCAAAATCTT
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
39 5 0.06
40 80 0.94
ACGTcount: A:0.36, C:0.06, G:0.11, T:0.47
Consensus pattern (40 bp):
TTTTTGAATGATTTCTAAAACTTTCAAATAGAATTTTAAA
Found at i:13190189 original size:120 final size:122
Alignment explanation
Indices: 13190041--13190268 Score: 279
Period size: 120 Copynumber: 1.9 Consensus size: 122
13190031 TTAATAAACC
* * * *
13190041 AATTTTTTGAATGATTTCTAAAACCTTTAAATAGAAT-TTTAAATTTTTGAATGA-TTTCTAAGA
1 AATTTTTTGAAAGATTTCTAAAACCTTTAAACAGAATATTT-AATTTTTAAACGATTTTC-AAG-
* *
13190104 CT-TTCAAGTAGAATTTTAAATTTT-TGAATGATTTTCAAGATTTTCAGGTAGAAATTTA
63 CTCTCCAAGTAGAATTTTAAATTTTGTAAATGATTTTCAAGATTTTCAGGTAGAAATTTA
* * *
13190162 AATTTTTT-AAAGATTT-TCAAAATCTTTAAACATAATATTTAATTTTTAAACGATTTTCAAGGT
1 AATTTTTTGAAAGATTTCT-AAAACCTTTAAACAGAATATTTAATTTTTAAACGATTTTCAAGCT
**
13190225 CTCCATTTAGAATTTTAAATTTTGTAAATGATTTTCAAGATTTT
65 CTCCAAGTAGAATTTTAAATTTTGTAAATGATTTTCAAGATTTT
13190269 TAAACATAGT
Statistics
Matches: 91, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
119 2 0.02
120 55 0.60
121 34 0.37
ACGTcount: A:0.36, C:0.07, G:0.10, T:0.46
Consensus pattern (122 bp):
AATTTTTTGAAAGATTTCTAAAACCTTTAAACAGAATATTTAATTTTTAAACGATTTTCAAGCTC
TCCAAGTAGAATTTTAAATTTTGTAAATGATTTTCAAGATTTTCAGGTAGAAATTTA
Found at i:13190206 original size:80 final size:81
Alignment explanation
Indices: 13190122--13190276 Score: 204
Period size: 80 Copynumber: 1.9 Consensus size: 81
13190112 TAGAATTTTA
* * * * *
13190122 AATTTTTGAATGATTTTCAAGATTTTCAGGTAGAAATTTAAATTTTTTAAA-GATTTTCAAAATC
1 AATTTTTAAACGATTTTCAAGATCTCCAGGTAGAAATTTAAATTTTGTAAATGATTTTCAAAATC
13190186 TTTAAACATAATATTT
66 TTTAAACATAATATTT
* ** * * *
13190202 AATTTTTAAACGATTTTCAAGGTCTCCATTTAGAATTTTAAATTTTGTAAATGATTTTCAAGATT
1 AATTTTTAAACGATTTTCAAGATCTCCAGGTAGAAATTTAAATTTTGTAAATGATTTTCAAAATC
13190267 TTTAAACATA
66 TTTAAACATA
13190277 GTTTATGAGT
Statistics
Matches: 63, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
80 42 0.67
81 21 0.33
ACGTcount: A:0.37, C:0.08, G:0.09, T:0.46
Consensus pattern (81 bp):
AATTTTTAAACGATTTTCAAGATCTCCAGGTAGAAATTTAAATTTTGTAAATGATTTTCAAAATC
TTTAAACATAATATTT
Found at i:13190261 original size:41 final size:40
Alignment explanation
Indices: 13190069--13190265 Score: 177
Period size: 40 Copynumber: 4.9 Consensus size: 40
13190059 TAAAACCTTT
*
13190069 AAATAGAATTTTAAATTTTTGAATGA-TTTCTAAGA-CTTTC
1 AAATAGAATTTTAAATTTTTAAATGATTTTC-AAGATC-TTC
* * *
13190109 AAGTAGAATTTTAAATTTTTGAATGATTTTCAAGATTTTC
1 AAATAGAATTTTAAATTTTTAAATGATTTTCAAGATCTTC
** * * *
13190149 AGGTAGAAATTTAAATTTTTTAAA-GATTTTCAAAATCTTT
1 AAATAGAATTTTAAA-TTTTTAAATGATTTTCAAGATCTTC
* * * * *
13190189 AAACATAATATTT-AATTTTTAAACGATTTTCAAGGTCTCC
1 AAATAGAAT-TTTAAATTTTTAAATGATTTTCAAGATCTTC
**
13190229 ATTTAGAATTTTAAATTTTGTAAATGATTTTCAAGAT
1 AAATAGAATTTTAAATTTT-TAAATGATTTTCAAGAT
13190266 TTTTAAACAT
Statistics
Matches: 127, Mismatches: 23, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
39 11 0.09
40 87 0.69
41 29 0.23
ACGTcount: A:0.38, C:0.07, G:0.10, T:0.45
Consensus pattern (40 bp):
AAATAGAATTTTAAATTTTTAAATGATTTTCAAGATCTTC
Found at i:13191007 original size:50 final size:50
Alignment explanation
Indices: 13190920--13191094 Score: 158
Period size: 50 Copynumber: 3.5 Consensus size: 50
13190910 TTTGTTTAGG
* * *
13190920 AGAAGCCTTTCAAAGATAAGA-TTTTAAAGTTTCAAAACCTCTATTCAAGAT
1 AGAA-CCTTTCAAAGTTAAGATTTTTAAAATTTCAAAACCTCTATTCAA-AA
* * * *
13190971 A-AACCTTTTAAAGTTAAGATTTTTAAAATCTCAAAACTTCTATTTAAAA
1 AGAACCTTTCAAAGTTAAGATTTTTAAAATTTCAAAACCTCTATTCAAAA
* * * * *
13191020 AGAACCTTTCAAA-TGTGAGATTTTTAAAATTTTAAAACCTTTGTTAAAAA
1 AGAACCTTTCAAAGT-TAAGATTTTTAAAATTTCAAAACCTCTATTCAAAA
* * * *
13191070 AGAGCCTTTTAAAGATAAAATTTTT
1 AGAACCTTTCAAAGTTAAGATTTTT
13191095 TAATCTCTTA
Statistics
Matches: 100, Mismatches: 20, Indels: 9
0.78 0.16 0.07
Matches are distributed among these distances:
49 17 0.17
50 82 0.82
51 1 0.01
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.37
Consensus pattern (50 bp):
AGAACCTTTCAAAGTTAAGATTTTTAAAATTTCAAAACCTCTATTCAAAA
Found at i:13191456 original size:20 final size:20
Alignment explanation
Indices: 13191432--13191469 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
13191422 AATGATGTAA
13191432 AAAAAAGT-AAAAGTCAAAG
1 AAAAAAGTCAAAAGTCAAAG
13191451 AAAAAAGTCAAAAGTCAAA
1 AAAAAAGTCAAAAGTCAAA
13191470 AGTCAACTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.68, C:0.08, G:0.13, T:0.11
Consensus pattern (20 bp):
AAAAAAGTCAAAAGTCAAAG
Found at i:13191463 original size:7 final size:7
Alignment explanation
Indices: 13191434--13191475 Score: 52
Period size: 7 Copynumber: 6.3 Consensus size: 7
13191424 TGATGTAAAA
13191434 AAAAGT-
1 AAAAGTC
13191440 AAAAGTC
1 AAAAGTC
**
13191447 -AAAGAA
1 AAAAGTC
13191453 AAAAGTC
1 AAAAGTC
13191460 AAAAGTC
1 AAAAGTC
13191467 AAAAGTC
1 AAAAGTC
13191474 AA
1 AA
13191476 CTTAGTCAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
6 10 0.33
7 20 0.67
ACGTcount: A:0.64, C:0.10, G:0.14, T:0.12
Consensus pattern (7 bp):
AAAAGTC
Found at i:13191502 original size:20 final size:20
Alignment explanation
Indices: 13191477--13191516 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
13191467 AAAAGTCAAC
13191477 TTAGTCAAACTTGATCGAAA
1 TTAGTCAAACTTGATCGAAA
**
13191497 TTAGTCAATTTTGATCGAAA
1 TTAGTCAAACTTGATCGAAA
13191517 CATGGTCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (20 bp):
TTAGTCAAACTTGATCGAAA
Found at i:13194345 original size:50 final size:47
Alignment explanation
Indices: 13194259--13194361 Score: 118
Period size: 50 Copynumber: 2.1 Consensus size: 47
13194249 GGACAACTCA
* *
13194259 GCTCTT-GAATATATCTAACATTATTATTTTACTTCTTTTTAATCAT
1 GCTCTTGGAATATATCTAACAATATTATTTTACTTCTTTATAATCAT
* * *
13194305 GCTCTTGGATTATATCTATCTAATATTAATTTATACTTCTTTATAATTAT
1 GCTCTTGGAATATATCTAAC-AATATT-ATTT-TACTTCTTTATAATCAT
*
13194355 CCTCTTG
1 GCTCTTG
13194362 AGTTGTATCT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
46 6 0.13
47 11 0.23
48 5 0.11
49 4 0.09
50 21 0.45
ACGTcount: A:0.27, C:0.16, G:0.06, T:0.51
Consensus pattern (47 bp):
GCTCTTGGAATATATCTAACAATATTATTTTACTTCTTTATAATCAT
Found at i:13195266 original size:2 final size:2
Alignment explanation
Indices: 13195259--13195296 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
13195249 TATGGATCTC
13195259 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13195297 TGGACATTGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13197650 original size:19 final size:18
Alignment explanation
Indices: 13197608--13197652 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 18
13197598 TATGAATGAT
13197608 TTTTAAATTATATTAAAA
1 TTTTAAATTATATTAAAA
13197626 TATTTAATATTATATCT-AAA
1 T-TTTAA-ATTATAT-TAAAA
13197646 TTTTAAA
1 TTTTAAA
13197653 AATCGTTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
18 2 0.08
19 10 0.42
20 11 0.46
21 1 0.04
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTTAAATTATATTAAAA
Found at i:13198903 original size:2 final size:2
Alignment explanation
Indices: 13198898--13198934 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
13198888 TTTTTCCTTT
*
13198898 TC TC TC TC TC TC TC TC TC TC TC TC AC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
13198935 TTACCTAAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.03, C:0.49, G:0.00, T:0.49
Consensus pattern (2 bp):
TC
Found at i:13200636 original size:20 final size:20
Alignment explanation
Indices: 13200611--13200649 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
13200601 AAGTTAGATC
13200611 GTTCAAGAT-TTTTTCAAATT
1 GTTCAA-ATATTTTTCAAATT
13200631 GTTCAAATATTTTTCAAAT
1 GTTCAAATATTTTTCAAAT
13200650 CCTTATGCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.33, C:0.10, G:0.08, T:0.49
Consensus pattern (20 bp):
GTTCAAATATTTTTCAAATT
Found at i:13203809 original size:4 final size:4
Alignment explanation
Indices: 13203796--13203859 Score: 57
Period size: 4 Copynumber: 17.0 Consensus size: 4
13203786 ATAATAATTT
* * *
13203796 TAAA -AAA TAAA T-AA TAAT TAAT TATA TAAA TAAA T-AA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
13203841 TAAA TAACA -AAA -AAA TAAA
1 TAAA TAA-A TAAA TAAA TAAA
13203860 AAAAGAGAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
3 13 0.25
4 37 0.73
5 1 0.02
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.27
Consensus pattern (4 bp):
TAAA
Found at i:13203812 original size:23 final size:22
Alignment explanation
Indices: 13203761--13203835 Score: 89
Period size: 23 Copynumber: 3.4 Consensus size: 22
13203751 ATTTCAGTAT
* *
13203761 AATATTAATAATTTTAATAAT-
1 AATAATAATAATTTTAAAAATA
13203782 AATAATAATAATTTTAAAAAATA
1 AATAATAATAATTTT-AAAAATA
* *
13203805 AATAATAATTAATTATATAAATA
1 AATAATAA-TAATTTTAAAAATA
13203828 AATAATAA
1 AATAATAA
13203836 ATAAATAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
21 14 0.30
22 5 0.11
23 22 0.47
24 6 0.13
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (22 bp):
AATAATAATAATTTTAAAAATA
Found at i:13203824 original size:19 final size:18
Alignment explanation
Indices: 13203775--13203847 Score: 64
Period size: 19 Copynumber: 4.2 Consensus size: 18
13203765 TTAATAATTT
13203775 TAATAAT-AAT-AAT-AA
1 TAATAATAAATAAATAAA
**
13203790 TAATTTTAAA-AAATAAA
1 TAATAATAAATAAATAAA
* *
13203807 TAATAATTAATTATATAAA
1 TAATAA-TAAATAAATAAA
13203826 TAAATAATAAATAAATAAA
1 T-AATAATAAATAAATAAA
13203845 TAA
1 TAA
13203848 CAAAAAAATA
Statistics
Matches: 44, Mismatches: 8, Indels: 9
0.72 0.13 0.15
Matches are distributed among these distances:
15 5 0.11
16 5 0.11
17 6 0.14
18 5 0.11
19 18 0.41
20 5 0.11
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (18 bp):
TAATAATAAATAAATAAA
Found at i:13203847 original size:23 final size:23
Alignment explanation
Indices: 13203796--13203847 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
13203786 ATAATAATTT
* *
13203796 TAAA-AAATAAATAATAATTAAT
1 TAAATAAATAAATAATAAATAAA
*
13203818 TATATAAATAAATAATAAATAAA
1 TAAATAAATAAATAATAAATAAA
13203841 TAAATAA
1 TAAATAA
13203848 CAAAAAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
22 3 0.12
23 22 0.88
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (23 bp):
TAAATAAATAAATAATAAATAAA
Found at i:13203986 original size:34 final size:35
Alignment explanation
Indices: 13203907--13203987 Score: 94
Period size: 35 Copynumber: 2.3 Consensus size: 35
13203897 CCCCAACTAG
* *
13203907 CCACCCTACAGCCCTCTGTTGCAGCCCCCGACCAA
1 CCACACTACAGCCCTCTGTTGCAGCCACCGACCAA
* *
13203942 CCACCCTACAGCCCTCTGTT-CAGCACACCTA-CAA
1 CCACACTACAGCCCTCTGTTGCAGC-CACCGACCAA
*
13203976 CCACATTACAGC
1 CCACACTACAGC
13203988 TACCCAGATC
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
34 17 0.41
35 24 0.59
ACGTcount: A:0.25, C:0.48, G:0.11, T:0.16
Consensus pattern (35 bp):
CCACACTACAGCCCTCTGTTGCAGCCACCGACCAA
Found at i:13204245 original size:14 final size:14
Alignment explanation
Indices: 13204205--13204246 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
13204195 ACCAACCACG
*
13204205 AAAACAAAAACAAA
1 AAAACAGAAACAAA
13204219 AAAACAGAAACAAGA
1 AAAACAGAAACAA-A
*
13204234 AAAA-AGAGACAAA
1 AAAACAGAAACAAA
13204247 CAGTCCTCCC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 1 0.04
14 19 0.76
15 5 0.20
ACGTcount: A:0.79, C:0.12, G:0.10, T:0.00
Consensus pattern (14 bp):
AAAACAGAAACAAA
Found at i:13205364 original size:17 final size:17
Alignment explanation
Indices: 13205323--13205361 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
13205313 AAAATCTCTC
*
13205323 AAATCCAAAACTCCTTA
1 AAATCCAAAACTCCTAA
13205340 AAATCCAAAA-TCCTAA
1 AAATCCAAAACTCCTAA
13205356 AAATCC
1 AAATCC
13205362 CAAGGACATG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.21
Consensus pattern (17 bp):
AAATCCAAAACTCCTAA
Found at i:13207460 original size:15 final size:15
Alignment explanation
Indices: 13207440--13207468 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
13207430 CATGTATTGC
13207440 ATTTCATACATACAT
1 ATTTCATACATACAT
13207455 ATTTCATACATACA
1 ATTTCATACATACA
13207469 GTAGGTTCGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.21, G:0.00, T:0.38
Consensus pattern (15 bp):
ATTTCATACATACAT
Found at i:13213949 original size:22 final size:22
Alignment explanation
Indices: 13213880--13213950 Score: 81
Period size: 22 Copynumber: 3.2 Consensus size: 22
13213870 AGATTTTGAG
* *
13213880 ATTTGTAAGACCTTCGAGCATA
1 ATTTCTAAGACCTTCGGGCATA
* * *
13213902 ATCTCTAAGACCTTCAGGCATG
1 ATTTCTAAGACCTTCGGGCATA
13213924 ATTTCTAAGA-CTTCCGGGCATA
1 ATTTCTAAGACCTT-CGGGCATA
13213946 ATTTC
1 ATTTC
13213951 GATTCACGGT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
21 3 0.08
22 37 0.93
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (22 bp):
ATTTCTAAGACCTTCGGGCATA
Found at i:13214145 original size:133 final size:131
Alignment explanation
Indices: 13213879--13214193 Score: 377
Period size: 133 Copynumber: 2.4 Consensus size: 131
13213869 AAGATTTTGA
* * * * * *
13213879 GATT-TGTAAGACCTTC-GAGCATAATCTCTAAGACCTTCAGGCATGATTTCTAAGACTTCCGGG
1 GATTCTGTAAGACC-TCAGAGCATGATTTGTAAGACC-TCCGGCATAATTTTTAAGACTTCCGGG
* * * **
13213942 CATAATTTCGATTCACGGTGTTATTCCGATCGATTTTTTATCTTTCGACTTGTGGTGTTATCTTA
64 CATAATTTCGATTCACGATGTTATTCCGATCAATTCTTTATCTTTCGACTTGTGGTGTTATCCCA
13214007 GTC
129 GTC
*
13214010 GATTCTGTAAGACCTCTAG-GCATGATTCTGTAAGACCTCCGGACATAATTTTTAAGACTTCTGG
1 GATTCTGTAAGACCTC-AGAGCATGATT-TGTAAGACCTCCGG-CATAATTTTTAAGACTTCCGG
* * *
13214074 GTATAATTTTGATTTACGATGTTA-TCTCGATCAATTCTTTATCTTTCGACTTGTGGTGTTATCC
63 GCATAATTTCGATTCACGATGTTATTC-CGATCAATTCTTTATCTTTCGACTTGTGGTGTTATCC
13214138 CAGTC
127 CAGTC
* * *
13214143 GATTCTGTAAGACCTCCGAGTATGATTTTTAAGACCTCCAGGCATAATTTT
1 GATTCTGTAAGACCTCAGAGCATGATTTGTAAGACCTCC-GGCATAATTTT
13214194 GATTCACGGT
Statistics
Matches: 158, Mismatches: 18, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
131 6 0.04
132 42 0.27
133 110 0.70
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.39
Consensus pattern (131 bp):
GATTCTGTAAGACCTCAGAGCATGATTTGTAAGACCTCCGGCATAATTTTTAAGACTTCCGGGCA
TAATTTCGATTCACGATGTTATTCCGATCAATTCTTTATCTTTCGACTTGTGGTGTTATCCCAGT
C
Found at i:13214160 original size:110 final size:109
Alignment explanation
Indices: 13214033--13214291 Score: 308
Period size: 110 Copynumber: 2.4 Consensus size: 109
13214023 CTCTAGGCAT
* * ** * *
13214033 GATTCTGTAAGACCTCCGGACATAATTTTTAAGACTTCTGGGTATAATTTTGATTTACGATGTTA
1 GATTCTGTAAGACCTCCGGACATGATTTTTAAGACCTCCAGGCATAATTTTGATTCACGATGTTA
*** *
13214098 T-CTCGATCAATTCTTTA-TCTTTCGACTTGTGGTGTTATCCCAGTC
66 TAC-CGATCAATTCTTTATTC-TT-GACTTACAGTGTTATCCCAATC
* *
13214143 GATTCTGTAAGACCTCC-GAGTATGATTTTTAAGACCTCCAGGCATAATTTTGATTCACGGTGTT
1 GATTCTGTAAGACCTCCGGA-CATGATTTTTAAGACCTCCAGGCATAATTTTGATTCACGATGTT
** *
13214207 ATACCGATTGATTCTTTATTCTTGACTTACAGTGTTATCTCAATC
65 ATACCGATCAATTCTTTATTCTTGACTTACAGTGTTATCCCAATC
*
13214252 GATTCTGTAAGACCTTCGGACATGATTTTGTAAGACCTCC
1 GATTCTGTAAGACCTCCGGACATGATTTT-TAAGACCTCC
13214292 GAGCATGATT
Statistics
Matches: 127, Mismatches: 17, Indels: 10
0.82 0.11 0.06
Matches are distributed among these distances:
109 43 0.34
110 81 0.64
111 3 0.02
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.39
Consensus pattern (109 bp):
GATTCTGTAAGACCTCCGGACATGATTTTTAAGACCTCCAGGCATAATTTTGATTCACGATGTTA
TACCGATCAATTCTTTATTCTTGACTTACAGTGTTATCCCAATC
Found at i:13214192 original size:22 final size:22
Alignment explanation
Indices: 13214150--13214193 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
13214140 GTCGATTCTG
* *
13214150 TAAGACCTCCGAGTATGATTTT
1 TAAGACCTCCGAGCATAATTTT
13214172 TAAGACCTCC-AGGCATAATTTT
1 TAAGACCTCCGA-GCATAATTTT
13214194 GATTCACGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 1 0.05
22 18 0.95
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (22 bp):
TAAGACCTCCGAGCATAATTTT
Found at i:13214283 original size:23 final size:24
Alignment explanation
Indices: 13214252--13214312 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 24
13214242 TATCTCAATC
* *
13214252 GATTCTGTAAGACCTTCGGA-CAT
1 GATTTTGTAAGACCTTCCGAGCAT
13214275 GATTTTGTAAGACC-TCCGAGCAT
1 GATTTTGTAAGACCTTCCGAGCAT
*
13214298 GATTTT-TAAAACCTT
1 GATTTTGTAAGACCTT
13214313 TAGGTATAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 10 0.30
23 23 0.70
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (24 bp):
GATTTTGTAAGACCTTCCGAGCAT
Found at i:13214284 original size:132 final size:131
Alignment explanation
Indices: 13214143--13214567 Score: 496
Period size: 132 Copynumber: 3.2 Consensus size: 131
13214133 TATCCCAGTC
*
13214143 GATTCTGTAAGACCTCCGAGTATGATTTTTAAGACCTCCAGGCATAATTTTGATTCACGGTGTTA
1 GATTCTGTAAGACCTCCGAGTATGATTTTTAAAACCTCCAGGCATAATTTTGATTCACGGTGTTA
* * *
13214208 TACCGATTGATTCTTTATTCTTGACTTACAGTGTTATCTCAATCGATTCTGTAAGACCTTCGGAC
66 T-CCGATTGATTCTTTATTCTTGACTTGCAGTGTTATCTCAGTCGATTCTGTAAGACCTCCGGAC
13214273 AT
130 AT
* * ** * *
13214275 GATTTTGTAAGACCTCCGAGCATGATTTTTAAAACCTTTAGGTATAATTTTGATTTACGGTGTTA
1 GATTCTGTAAGACCTCCGAGTATGATTTTTAAAACCTCCAGGCATAATTTTGATTCACGGTGTTA
* *
13214340 TCTCGATTGATTTTTTATTCTTGACTTGCAGTGTTATCTCAGTCGATTCTATAAGACCTCCAGG-
66 TC-CGATTGATTCTTTATTCTTGACTTGCAGTGTTATCTCAGTCGATTCTGTAAGACCTCC-GGA
13214404 CAT
129 CAT
* * * * * ****
13214407 GATTCTGTAAAACCTTCGGGTATGATTTTTAATACCTCCAGGCATAATTTCGATTCGTAATGTTA
1 GATTCTGTAAGACCTCCGAGTATGATTTTTAAAACCTCCAGGCATAATTTTGATTCACGGTGTTA
* ** **
13214472 TCCCAATCAATTCTTTA-TCTTTCGACTTGTGGTGTTATCTCAGTCGATTCTGTAAGACCTCCGG
66 T-CCGATTGATTCTTTATTC-TT-GACTTGCAGTGTTATCTCAGTCGATTCTGTAAGACCTCCGG
*
13214536 ATAT
128 ACAT
* * * *
13214540 GATT-TCTAAGACTTCCGGGTATAATTTT
1 GATTCTGTAAGACCTCCGAGTATGATTTT
13214568 GATTTACGGT
Statistics
Matches: 247, Mismatches: 40, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
131 3 0.01
132 199 0.81
133 45 0.18
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (131 bp):
GATTCTGTAAGACCTCCGAGTATGATTTTTAAAACCTCCAGGCATAATTTTGATTCACGGTGTTA
TCCGATTGATTCTTTATTCTTGACTTGCAGTGTTATCTCAGTCGATTCTGTAAGACCTCCGGACA
T
Found at i:13214333 original size:242 final size:242
Alignment explanation
Indices: 13213921--13214400 Score: 639
Period size: 242 Copynumber: 2.0 Consensus size: 242
13213911 ACCTTCAGGC
* * * *
13213921 ATGATTTCTAAGACTTCCGGGCATAATTTCGATTCACGGTGTTATTCCGATCGATTTTTTATCTT
1 ATGATTTCTAAGACCTCCAGGCATAATTTCGATTCACGGTGTTATACCGATCGATTCTTTATCTT
*** * *
13213986 TCGACTTGTGGTGTTATCTTAGTCGATTCTGTAAGACCTCTAGGCATGATTCTGTAAGACCTCCG
66 TCGACTTACAGTGTTATCTCAATCGATTCTGTAAGACCTCTAGGCATGATTCTGTAAGACCTCCG
* *
13214051 GACATAATTTTTAAGACTTCTGGGTATAATTTTGATTTACGATGTTATCTCGATCAATTCTTTA-
131 GACATAATTTTTAAAACTTCTAGGTATAATTTTGATTTACGATGTTATCTCGATCAATTCTTTAT
** *
13214115 TCTTTCGACTTGTGGTGTTATCCCAGTCGATTCTGTAAGACCTCCGAGT
196 TC-TT-GACTTGCAGTGTTATCCCAGTCGATTCTATAAGACCTCCGAGT
* * *
13214164 ATGATTTTTAAGACCTCCAGGCATAATTTTGATTCACGGTGTTATACCGATTGATTCTTTAT-TC
1 ATGATTTCTAAGACCTCCAGGCATAATTTCGATTCACGGTGTTATACCGATCGATTCTTTATCT-
* *
13214228 TT-GACTTACAGTGTTATCTCAATCGATTCTGTAAGACCT-TCGGACATGATTTTGTAAGACCTC
65 TTCGACTTACAGTGTTATCTCAATCGATTCTGTAAGACCTCTAGG-CATGATTCTGTAAGACCTC
* * ** *
13214291 C-GAGCATGATTTTTAAAACCTT-TAGGTATAATTTTGATTTACGGTGTTATCTCGATTGATTTT
129 CGGA-CATAATTTTTAAAA-CTTCTAGGTATAATTTTGATTTACGATGTTATCTCGATCAATTCT
*
13214354 TTATTCTTGACTTGCAGTGTTATCTCAGTCGATTCTATAAGACCTCC
192 TTATTCTTGACTTGCAGTGTTATCCCAGTCGATTCTATAAGACCTCC
13214401 AGGCATGATT
Statistics
Matches: 207, Mismatches: 25, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
241 40 0.19
242 105 0.51
243 62 0.30
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.41
Consensus pattern (242 bp):
ATGATTTCTAAGACCTCCAGGCATAATTTCGATTCACGGTGTTATACCGATCGATTCTTTATCTT
TCGACTTACAGTGTTATCTCAATCGATTCTGTAAGACCTCTAGGCATGATTCTGTAAGACCTCCG
GACATAATTTTTAAAACTTCTAGGTATAATTTTGATTTACGATGTTATCTCGATCAATTCTTTAT
TCTTGACTTGCAGTGTTATCCCAGTCGATTCTATAAGACCTCCGAGT
Found at i:13214421 original size:23 final size:23
Alignment explanation
Indices: 13214384--13214451 Score: 66
Period size: 23 Copynumber: 3.0 Consensus size: 23
13214374 TATCTCAGTC
*
13214384 GATTCTATAAGACCTCCAGGCAT
1 GATTCTATAAAACCTCCAGGCAT
* * * *
13214407 GATTCTGTAAAACCTTCGGGTAT
1 GATTCTATAAAACCTCCAGGCAT
* *
13214430 GATT-TTTAATACCTCCAGGCAT
1 GATTCTATAAAACCTCCAGGCAT
13214452 AATTTCGATT
Statistics
Matches: 35, Mismatches: 10, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
22 13 0.37
23 22 0.63
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (23 bp):
GATTCTATAAAACCTCCAGGCAT
Found at i:13214456 original size:22 final size:22
Alignment explanation
Indices: 13214395--13214456 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
13214385 ATTCTATAAG
13214395 ACCTCCAGGCATGATTCTGTAAA
1 ACCTCCAGGCATGATT-TGTAAA
* * * * *
13214418 ACCTTCGGGTATGATTTTTAAT
1 ACCTCCAGGCATGATTTGTAAA
*
13214440 ACCTCCAGGCATAATTT
1 ACCTCCAGGCATGATTT
13214457 CGATTCGTAA
Statistics
Matches: 30, Mismatches: 9, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
22 17 0.57
23 13 0.43
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (22 bp):
ACCTCCAGGCATGATTTGTAAA
Found at i:13214528 original size:242 final size:241
Alignment explanation
Indices: 13214275--13214809 Score: 689
Period size: 242 Copynumber: 2.2 Consensus size: 241
13214265 CTTCGGACAT
* * *
13214275 GATTTTGTAAGACCTCCGAGCATGATTTTTAAAACCTTTAGGTATAATTTTGATTTACGGTGTTA
1 GATTCTGTAAGACCTCCGAGCATGATTTCTAAAACCTTCAGGTATAATTTTGATTTACGGTGTTA
* * * * * * *
13214340 TCTCGATTGATTTTTTATTCTTGACTTGCAGTGTTATCTC-AGTCGATTCTATAAGACCTCCAGG
66 TCCCAATCGATTCTTTATTCTTAACTTACAGTGTTATCTCGA-TCAATTCTATAAGACCTCCAGG
* * * * * * *
13214404 CATGATTCTGTAAAACCTTCGGGTATGATTTTTAATACCTCCAGGCATAATTTCGATTCGTAATG
130 CATGATT-TCTAAAACATCCGGGCATGATTTCTAAGACCTCCAGGCATAATTTCGATTCGCAATG
* * *
13214469 TTATCCCAATCAATTCTTTATCTTTCGACTTGTGGTGTTATCTCAGTC
194 TTATCCCAATCAATTCTTTATCTTTAGACTTATGATGTTATCTCAGTC
* * *
13214517 GATTCTGTAAGACCTCCG-GATATGATTTCTAAGA-CTTCCGGGTATAATTTTGATTTACGGTGT
1 GATTCTGTAAGACCTCCGAG-CATGATTTCTAAAACCTT-CAGGTATAATTTTGATTTACGGTGT
* * * *
13214580 TATCCCAATCGATTCTTTATTCTTAACTTACGGTGTTATCTCGATCAATTTTGTAAGACCTCCGG
64 TATCCCAATCGATTCTTTATTCTTAACTTACAGTGTTATCTCGATCAATTCTATAAGACCTCCAG
* *
13214645 GCATGATTTCTAAGACATCCGGGCATGATTTCTAAGACCTCCAGGCATAATTTCGATTCGCGATG
129 GCATGATTTCTAAAACATCCGGGCATGATTTCTAAGACCTCCAGGCATAATTTCGATTCGCAATG
* * **
13214710 TTATCTCGATTGATTCTTTATCTTTAGACTTATGATGTTATCTCAGTC
194 TTATCCCAATCAATTCTTTATCTTTAGACTTATGATGTTATCTCAGTC
* *
13214758 GATTCTGTAAGACCTCCGAGCATGATTCTGTAAAACCTTCAGGTATGATTTT
1 GATTCTGTAAGACCTCCGAGCATGATT-TCTAAAACCTTCAGGTATAATTTT
13214810 TAAGAGCTCC
Statistics
Matches: 249, Mismatches: 38, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
241 117 0.47
242 128 0.51
243 4 0.02
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.39
Consensus pattern (241 bp):
GATTCTGTAAGACCTCCGAGCATGATTTCTAAAACCTTCAGGTATAATTTTGATTTACGGTGTTA
TCCCAATCGATTCTTTATTCTTAACTTACAGTGTTATCTCGATCAATTCTATAAGACCTCCAGGC
ATGATTTCTAAAACATCCGGGCATGATTTCTAAGACCTCCAGGCATAATTTCGATTCGCAATGTT
ATCCCAATCAATTCTTTATCTTTAGACTTATGATGTTATCTCAGTC
Found at i:13214549 original size:22 final size:22
Alignment explanation
Indices: 13214524--13214566 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
13214514 GTCGATTCTG
*
13214524 TAAGACCTCCGGATATGATTTC
1 TAAGACCTCCGGATATAATTTC
* *
13214546 TAAGACTTCCGGGTATAATTT
1 TAAGACCTCCGGATATAATTT
13214567 TGATTTACGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35
Consensus pattern (22 bp):
TAAGACCTCCGGATATAATTTC
Found at i:13214579 original size:374 final size:374
Alignment explanation
Indices: 13213919--13214936 Score: 1309
Period size: 374 Copynumber: 2.7 Consensus size: 374
13213909 AGACCTTCAG
* * * *
13213919 GCATGATTTCTAAGACTTCCGGGCATAATTTCGATTCACGGTGTTAT-TCCGATCGATTTTTTAT
1 GCATGATTTCTAAAACCTCCAGGCATAATTTCGATTCACGGTGTTATCT-CGATTGATTTTTTAT
* * * * *
13213983 CTTTCGACTTGTGGTGTTATCTTAGTCGATTCTGTAAGACCTCTAGGCATGATTCTGTAAGACCT
65 CTTTAGACTTG-AGTGTTATCTCAGTCGATTCTGTAAGACCTCCAGGCATGATTCTGTAAAACCT
* ** * * ** * * *
13214048 CCGGACATAATTTTTAAGACTTCTGGGTATAATTTTGATT--TACGATGTTATCTCGATCAATTC
129 TCGGGTATGATTTTTAAGACCTCCAGGCATAATTTCGATTCGTA--ATGTTATCCCGATCAATTC
*
13214111 TTTATCTTTCGACTTGTGGTGTTATCCCAGTCGATTCTGTAAGACCTCC-GAGTATGATTTTTAA
192 TTTATCTTTCGACTTGTGGTGTTATCCCAGTCGATTCTGTAAGACCTCCGGAGTATGATTTCTAA
* * *
13214175 GACCTCCAGGCATAATTTTGATTCACGGTGTTATACCGATTGATTCTTTATTCTTGACTTACAGT
257 GACCTCCAGGCATAATTTTGATTCACGGTGTTATACCAATCGATTCTTTATTCTTAACTTACAGT
* * * *
13214240 GTTATCTCAATCGATTCTGTAAGACCTTCGGACATGATTTTGTAAGACCTCCGA
322 GTTATCTCAATCAATTCTGTAAGACCTCCGGACATGA-TTTCTAAGACATCCGA
* ** * * *
13214294 GCATGATTTTTAAAACCTTTAGGTATAATTTTGATTTACGGTGTTATCTCGATTGATTTTTTAT-
1 GCATGATTTCTAAAACCTCCAGGCATAATTTCGATTCACGGTGTTATCTCGATTGATTTTTTATC
*
13214358 TCTT-GACTTGCAGTGTTATCTCAGTCGATTCTATAAGACCTCCAGGCATGATTCTGTAAAACCT
66 T-TTAGACTTG-AGTGTTATCTCAGTCGATTCTGTAAGACCTCCAGGCATGATTCTGTAAAACCT
* *
13214422 TCGGGTATGATTTTTAATACCTCCAGGCATAATTTCGATTCGTAATGTTATCCCAATCAATTCTT
129 TCGGGTATGATTTTTAAGACCTCCAGGCATAATTTCGATTCGTAATGTTATCCCGATCAATTCTT
*
13214487 TATCTTTCGACTTGTGGTGTTATCTCAGTCGATTCTGTAAGACCTCCGGA-TATGATTTCTAAGA
194 TATCTTTCGACTTGTGGTGTTATCCCAGTCGATTCTGTAAGACCTCCGGAGTATGATTTCTAAGA
* * * * * *
13214551 CTTCCGGGTATAATTTTGATTTACGGTGTTATCCCAATCGATTCTTTATTCTTAACTTACGGTGT
259 CCTCCAGGCATAATTTTGATTCACGGTGTTATACCAATCGATTCTTTATTCTTAACTTACAGTGT
* * * *
13214616 TATCTCGATCAATTTTGTAAGACCTCCGGGCATGATTTCTAAGACATCCGG
324 TATCTCAATCAATTCTGTAAGACCTCCGGACATGATTTCTAAGACATCCGA
* * * *
13214667 GCATGATTTCTAAGACCTCCAGGCATAATTTCGATTCGCGATGTTATCTCGATTGATTCTTTATC
1 GCATGATTTCTAAAACCTCCAGGCATAATTTCGATTCACGGTGTTATCTCGATTGATTTTTTATC
13214732 TTTAGACTT-ATGATGTTATCTCAGTCGATTCTGTAAGACCTCC-GAGCATGATTCTGTAAAACC
66 TTTAGACTTGA-G-TGTTATCTCAGTCGATTCTGTAAGACCTCCAG-GCATGATTCTGTAAAACC
* * * * * *
13214795 TTCAGGTATGATTTTTAAGAGCTCCAGACATAATTTCGATTCGCAATGTTATCCCGATCGATTTT
128 TTCGGGTATGATTTTTAAGACCTCCAGGCATAATTTCGATTCGTAATGTTATCCCGATCAATTCT
* * *
13214860 TTATCTTTCGACTTGTGGTGTTATCCCAGTTGATTCTGTAAGACCTCCGG-GCATGATTCTGTAA
193 TTATCTTTCGACTTGTGGTGTTATCCCAGTCGATTCTGTAAGACCTCCGGAGTATGATT-TCTAA
* *
13214924 GATCTTCAGGCAT
257 GACCTCCAGGCAT
13214937 GATGTCTAAG
Statistics
Matches: 556, Mismatches: 75, Indels: 24
0.85 0.11 0.04
Matches are distributed among these distances:
372 1 0.00
373 71 0.13
374 413 0.74
375 68 0.12
376 3 0.01
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.39
Consensus pattern (374 bp):
GCATGATTTCTAAAACCTCCAGGCATAATTTCGATTCACGGTGTTATCTCGATTGATTTTTTATC
TTTAGACTTGAGTGTTATCTCAGTCGATTCTGTAAGACCTCCAGGCATGATTCTGTAAAACCTTC
GGGTATGATTTTTAAGACCTCCAGGCATAATTTCGATTCGTAATGTTATCCCGATCAATTCTTTA
TCTTTCGACTTGTGGTGTTATCCCAGTCGATTCTGTAAGACCTCCGGAGTATGATTTCTAAGACC
TCCAGGCATAATTTTGATTCACGGTGTTATACCAATCGATTCTTTATTCTTAACTTACAGTGTTA
TCTCAATCAATTCTGTAAGACCTCCGGACATGATTTCTAAGACATCCGA
Found at i:13214654 original size:109 final size:110
Alignment explanation
Indices: 13214467--13214667 Score: 282
Period size: 109 Copynumber: 1.8 Consensus size: 110
13214457 CGATTCGTAA
* ** *
13214467 TGTTATCCCAATCAATTCTTTATCTTTCGACTTGTGGTGTTATCTCAGTCGATTCTGTAAGACCT
1 TGTTATCCCAATCAATTCTTTATCTTTCAACTTACGGTGTTATCTCAGTCAATTCTGTAAGACCT
* *
13214532 CCGGATATGATTTCTAAGACTTCCGGGTATAATTTTGATTTACGG
66 CCGGACATGATTTCTAAGACATCCGGGTATAATTTTGATTTACGG
* *
13214577 TGTTATCCCAATCGATTCTTTAT-TCTT-AACTTACGGTGTTATCTC-GATCAATTTTGTAAGAC
1 TGTTATCCCAATCAATTCTTTATCT-TTCAACTTACGGTGTTATCTCAG-TCAATTCTGTAAGAC
*
13214639 CTCCGGGCATGATTTCTAAGACATCCGGG
64 CTCCGGACATGATTTCTAAGACATCCGGG
13214668 CATGATTTCT
Statistics
Matches: 80, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
108 1 0.01
109 55 0.69
110 24 0.30
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.39
Consensus pattern (110 bp):
TGTTATCCCAATCAATTCTTTATCTTTCAACTTACGGTGTTATCTCAGTCAATTCTGTAAGACCT
CCGGACATGATTTCTAAGACATCCGGGTATAATTTTGATTTACGG
Found at i:13214658 original size:22 final size:22
Alignment explanation
Indices: 13214633--13214698 Score: 105
Period size: 22 Copynumber: 3.0 Consensus size: 22
13214623 ATCAATTTTG
13214633 TAAGACCTCCGGGCATGATTTC
1 TAAGACCTCCGGGCATGATTTC
*
13214655 TAAGACATCCGGGCATGATTTC
1 TAAGACCTCCGGGCATGATTTC
* *
13214677 TAAGACCTCCAGGCATAATTTC
1 TAAGACCTCCGGGCATGATTTC
13214699 GATTCGCGAT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (22 bp):
TAAGACCTCCGGGCATGATTTC
Found at i:13214844 original size:133 final size:131
Alignment explanation
Indices: 13214577--13215058 Score: 533
Period size: 133 Copynumber: 3.6 Consensus size: 131
13214567 TGATTTACGG
* * * * *
13214577 TGTTATCCCAATCGATTCTTTAT-TCTTAACTTACGGTGTTATCTC-GATCAATTTTGTAAGACC
1 TGTTATCCCGATCGATTCTTTATCT-TTAACTTATGATGTTATCTCAG-TCGATTCTGTAAGACC
* * * * * *
13214640 TCCGGGCATGATTTCTAAGACATCCGGGCATGATTTCTAAGACCTCCAGGCATAATTTCGATTCG
64 TCCGAGCATGATTTGTAAGACCTTCAGGCATGATTTCTAAGACCTCCAGACATAATTTCGATTCG
*
13214705 CGA
129 CAA
* *
13214708 TGTTATCTCGATTGATTCTTTATCTTTAGACTTATGATGTTATCTCAGTCGATTCTGTAAGACCT
1 TGTTATCCCGATCGATTCTTTATCTTTA-ACTTATGATGTTATCTCAGTCGATTCTGTAAGACCT
* * * *
13214773 CCGAGCATGATTCTGTAAAACCTTCAGGTATGATTTTTAAGAGCTCCAGACATAATTTCGATTCG
65 CCGAGCATGATT-TGTAAGACCTTCAGGCATGATTTCTAAGACCTCCAGACATAATTTCGATTCG
13214838 CAA
129 CAA
* * * * * *
13214841 TGTTATCCCGATCGATTTTTTATCTTTCGACTTGTGGTGTTATCCCAGTTGATTCTGTAAGACCT
1 TGTTATCCCGATCGATTCTTTATCTTT-AACTTATGATGTTATCTCAGTCGATTCTGTAAGACCT
* * * *
13214906 CCGGGCATGATTCTGTAAGATCTTCAGGCATGATGTCTAAGACCTCC-GAGCATAAATTCGATTC
65 CCGAGCATGATT-TGTAAGACCTTCAGGCATGATTTCTAAGACCTCCAGA-CATAATTTCGATTC
*
13214970 GCAG
128 GCAA
* * * * *
13214974 TGTTATCCCGATCGATTCCTTATTTTTTAACTTGT-AGTATTATCTCAATCGATTCTGTAAGACC
1 TGTTATCCCGATCGATTCTTTA-TCTTTAACTTATGA-TGTTATCTCAGTCGATTCTGTAAGACC
13215038 TCC-AGGCATGATTTGTAAGAC
64 TCCGA-GCATGATTTGTAAGAC
13215059 TTCCGAGCAT
Statistics
Matches: 296, Mismatches: 46, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
131 23 0.08
132 51 0.17
133 218 0.74
134 4 0.01
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (131 bp):
TGTTATCCCGATCGATTCTTTATCTTTAACTTATGATGTTATCTCAGTCGATTCTGTAAGACCTC
CGAGCATGATTTGTAAGACCTTCAGGCATGATTTCTAAGACCTCCAGACATAATTTCGATTCGCA
A
Found at i:13214920 original size:23 final size:23
Alignment explanation
Indices: 13214890--13214958 Score: 79
Period size: 23 Copynumber: 3.0 Consensus size: 23
13214880 TTATCCCAGT
13214890 TGATTCTGTAAGACCTCCGGGCA
1 TGATTCTGTAAGACCTCCGGGCA
* * *
13214913 TGATTCTGTAAGATCTTCAGGCA
1 TGATTCTGTAAGACCTCCGGGCA
*
13214936 TGATGTC--TAAGACCTCCGAGCA
1 TGAT-TCTGTAAGACCTCCGGGCA
13214958 T
1 T
13214959 AAATTCGATT
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
22 12 0.32
23 24 0.63
24 2 0.05
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (23 bp):
TGATTCTGTAAGACCTCCGGGCA
Found at i:13215543 original size:24 final size:24
Alignment explanation
Indices: 13215506--13215563 Score: 80
Period size: 25 Copynumber: 2.4 Consensus size: 24
13215496 TCTCCTACAT
*
13215506 TCTCTTGGACCCCCTCTCAAAAAAC
1 TCTCTCGGACCCCCTCTC-AAAAAC
* *
13215531 TCTCTCGGACCCCCTTTCAAAAGC
1 TCTCTCGGACCCCCTCTCAAAAAC
13215555 TCTCTCGGA
1 TCTCTCGGA
13215564 TGCCCAAGAG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 14 0.47
25 16 0.53
ACGTcount: A:0.22, C:0.40, G:0.12, T:0.26
Consensus pattern (24 bp):
TCTCTCGGACCCCCTCTCAAAAAC
Found at i:13215699 original size:14 final size:14
Alignment explanation
Indices: 13215667--13215700 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
13215657 CACCAACCAC
*
13215667 AAAAACAGAAACAT
1 AAAAACAGAAAAAT
13215681 AAAAACAGAAAGAAT
1 AAAAACAGAAA-AAT
13215696 AAAAA
1 AAAAA
13215701 ATAGACAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.76, C:0.09, G:0.09, T:0.06
Consensus pattern (14 bp):
AAAAACAGAAAAAT
Found at i:13216007 original size:12 final size:12
Alignment explanation
Indices: 13215990--13216014 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
13215980 GGCGAGAGAG
13215990 CTCCAGAGCTTT
1 CTCCAGAGCTTT
13216002 CTCCAGAGCTTT
1 CTCCAGAGCTTT
13216014 C
1 C
13216015 CCTTTTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.36, G:0.16, T:0.32
Consensus pattern (12 bp):
CTCCAGAGCTTT
Found at i:13216797 original size:16 final size:17
Alignment explanation
Indices: 13216778--13216814 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
13216768 CTAGGTTTCT
13216778 AAAACTCC-TAAAATCC
1 AAAACTCCTTAAAATCC
*
13216794 AAAACTCCTTAAAATCT
1 AAAACTCCTTAAAATCC
13216811 AAAA
1 AAAA
13216815 TTTTAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.54, C:0.24, G:0.00, T:0.22
Consensus pattern (17 bp):
AAAACTCCTTAAAATCC
Found at i:13219977 original size:18 final size:18
Alignment explanation
Indices: 13219956--13219990 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
13219946 TATATTATAT
*
13219956 TAATAGTATATTATTTAC
1 TAATAATATATTATTTAC
*
13219974 TAATAATCTATTATTTA
1 TAATAATATATTATTTA
13219991 TTCATATATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.06, G:0.03, T:0.51
Consensus pattern (18 bp):
TAATAATATATTATTTAC
Found at i:13220044 original size:7 final size:7
Alignment explanation
Indices: 13220029--13220213 Score: 59
Period size: 7 Copynumber: 24.1 Consensus size: 7
13220019 AAATTAATAA
*
13220029 TATTCAT
1 TATTTAT
13220036 TATTTAT
1 TATTTAT
13220043 TATTTAT
1 TATTTAT
13220050 TAATATAATAT
1 T-AT-T--TAT
13220061 TATTTAT
1 TATTTAT
*
13220068 TAATATAT
1 T-ATTTAT
* *
13220076 AATAATAT
1 TAT-TTAT
*
13220084 TATTTCT
1 TATTTAT
*
13220091 TAATATAT
1 T-ATTTAT
13220099 TATATTAAT
1 TAT-TT-AT
13220108 AGTATATTACT
1 --TAT-TTA-T
*
13220119 TATTCAT
1 TATTTAT
* *
13220126 AATATAT
1 TATTTAT
*
13220133 TATATAT
1 TATTTAT
13220140 TAATTTAT
1 T-ATTTAT
13220148 TATTTAT
1 TATTTAT
*
13220155 TAATATAT
1 T-ATTTAT
*
13220163 GATTTAT
1 TATTTAT
*
13220170 TA-ATAT
1 TATTTAT
*
13220176 AATATTATT
1 TAT-TTA-T
13220185 TATTTAT
1 TATTTAT
13220192 TA-TTAT
1 TATTTAT
*
13220198 AATTTTAT
1 TA-TTTAT
13220206 TATTTAT
1 TATTTAT
13220213 T
1 T
13220214 TATATAATAT
Statistics
Matches: 134, Mismatches: 25, Indels: 38
0.68 0.13 0.19
Matches are distributed among these distances:
6 9 0.07
7 59 0.44
8 42 0.31
9 10 0.07
10 3 0.02
11 11 0.08
ACGTcount: A:0.39, C:0.02, G:0.01, T:0.58
Consensus pattern (7 bp):
TATTTAT
Found at i:13220045 original size:29 final size:25
Alignment explanation
Indices: 13219964--13220161 Score: 113
Period size: 26 Copynumber: 7.7 Consensus size: 25
13219954 ATTAATAGTA
* *
13219964 TATTATTTACTAATA-ATCTATTATT
1 TATTATTTATTAATATA-ATATTATT
* *
13219989 TATTCATATATTAGTATAATATT-TT
1 TATT-ATTTATTAATATAATATTATT
** *
13220014 TATT-TAAATTAATAATATTCATTATT
1 TATTATTTATTAAT-ATAAT-ATTATT
13220040 TATTATTTATTAATATAATATTATT
1 TATTATTTATTAATATAATATTATT
*
13220065 TATTA-ATA-T-ATAATAATATTATT
1 TATTATTTATTAAT-ATAATATTATT
* * *
13220088 TCTTAATATATT-ATATTAATAGTATAT
1 TATT-ATTTATTAATA-TAATATTAT-T
* *
13220115 TACTTATTCATAATATATTATATATTAATT
1 TA-TTATTTATTA-ATA-TA-ATATT-ATT
13220145 TATTATTTATTAATATA
1 TATTATTTATTAATATA
13220162 TGATTTATTA
Statistics
Matches: 136, Mismatches: 20, Indels: 32
0.72 0.11 0.17
Matches are distributed among these distances:
22 2 0.01
23 22 0.16
24 7 0.05
25 28 0.21
26 33 0.24
27 16 0.12
28 5 0.04
29 14 0.10
30 7 0.05
31 2 0.01
ACGTcount: A:0.40, C:0.04, G:0.01, T:0.55
Consensus pattern (25 bp):
TATTATTTATTAATATAATATTATT
Found at i:13220061 original size:18 final size:18
Alignment explanation
Indices: 13220040--13220230 Score: 125
Period size: 18 Copynumber: 10.6 Consensus size: 18
13220030 ATTCATTATT
13220040 TATTATTTATTAATATAA
1 TATTATTTATTAATATAA
13220058 TATTATTTATTAATAT-A
1 TATTATTTATTAATATAA
* **
13220075 TAATAATATTATTTCT-TAA
1 T-ATTAT-TTATTAATATAA
13220094 TA-TATTATATTAATAGT-A
1 TATTATT-TATTAATA-TAA
* *
13220112 TATTACTTATTCATA-ATA
1 TATTATTTATTAATATA-A
*
13220130 TATTATATATTAAT-T--
1 TATTATTTATTAATATAA
13220145 TATTATTTATT-A-AT-A
1 TATTATTTATTAATATAA
*
13220160 TATGATTTATTAATATAA
1 TATTATTTATTAATATAA
13220178 TATTATTTATTTATTATTATAA
1 TATTATTTA-TTA--A-TATAA
*
13220200 TTTTATTATTTATTTATATAA
1 ---TATTATTTATTAATATAA
13220221 TATTATTTAT
1 TATTATTTAT
13220231 AAGTAAAATT
Statistics
Matches: 136, Mismatches: 15, Indels: 44
0.70 0.08 0.23
Matches are distributed among these distances:
14 2 0.01
15 20 0.15
16 2 0.01
17 11 0.08
18 63 0.46
19 15 0.11
21 6 0.04
22 6 0.04
24 2 0.01
25 9 0.07
ACGTcount: A:0.40, C:0.02, G:0.01, T:0.58
Consensus pattern (18 bp):
TATTATTTATTAATATAA
Found at i:13220220 original size:43 final size:44
Alignment explanation
Indices: 13220125--13220230 Score: 135
Period size: 43 Copynumber: 2.4 Consensus size: 44
13220115 TACTTATTCA
* *
13220125 TAATATATTATATATTAATTTATTATTTATTAATATATGATTTAT
1 TAATATAATAT-TATTTATTTATTATTTATTAATATATGATTTAT
* *
13220170 TAATATAATATTATTTATTTATTA-TTA-TAATTTTATTATTTAT
1 TAATATAATATTATTTATTTATTATTTATTAA-TATATGATTTAT
*
13220213 TTATATAATATTATTTAT
1 TAATATAATATTATTTAT
13220231 AAGTAAAATT
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
42 3 0.05
43 30 0.55
44 12 0.22
45 10 0.18
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.60
Consensus pattern (44 bp):
TAATATAATATTATTTATTTATTATTTATTAATATATGATTTAT
Found at i:13220229 original size:25 final size:24
Alignment explanation
Indices: 13220145--13220230 Score: 77
Period size: 25 Copynumber: 3.4 Consensus size: 24
13220135 TATATTAATT
13220145 TATTATTTATTAATATATGATTTATTAA
1 TATTATTTATT-AT-T-T-ATTTATTAA
* *
13220173 TA-TA-ATATTATTTATTTATTAT
1 TATTATTTATTATTTATTTATTAA
*
13220195 TATAATTTTATTATTTATTTATATAA
1 TATTA-TTTATTATTTATTTAT-TAA
13220221 TATTATTTAT
1 TATTATTTAT
13220231 AAGTAAAATT
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
22 10 0.21
23 2 0.04
24 1 0.02
25 21 0.44
26 10 0.21
27 2 0.04
28 2 0.04
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.62
Consensus pattern (24 bp):
TATTATTTATTATTTATTTATTAA
Found at i:13220418 original size:14 final size:16
Alignment explanation
Indices: 13220401--13220435 Score: 56
Period size: 14 Copynumber: 2.3 Consensus size: 16
13220391 CTTTAAAATA
13220401 TAAAAATTAT-TTTT-
1 TAAAAATTATATTTTG
13220415 TAAAAATTATATTTTG
1 TAAAAATTATATTTTG
13220431 TAAAA
1 TAAAA
13220436 CAAATGGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 10 0.53
15 4 0.21
16 5 0.26
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (16 bp):
TAAAAATTATATTTTG
Found at i:13222937 original size:50 final size:50
Alignment explanation
Indices: 13222847--13223094 Score: 346
Period size: 47 Copynumber: 5.1 Consensus size: 50
13222837 CTCTTTAATA
* * * * *
13222847 TATCTAATATTAATATTACACTTCTTTTTAATCATGCTCTTGGATTATATC
1 TATCTAATATTAATA-TATACTTCTTTATAATTATGCTCTTGGATTGTGTC
* *
13222898 TATCTAATATTAATATAAACTTCTTTATAATTATGCTCTTGGATTATGTC
1 TATCTAATATTAATATATACTTCTTTATAATTATGCTCTTGGATTGTGTC
13222948 TATCTAATATTAATATATA--T-TTTATAATTATGCTCTTGGATTGTGTC
1 TATCTAATATTAATATATACTTCTTTATAATTATGCTCTTGGATTGTGTC
* * *
13222995 TGTCTAATATTAATATATA---CTTTATAATTATTCTCTTGGATTGTGCC
1 TATCTAATATTAATATATACTTCTTTATAATTATGCTCTTGGATTGTGTC
*
13223042 TATCTAATATTAATATATACTTCTTTATAATTATGCTCTTGGATTGTATC
1 TATCTAATATTAATATATACTTCTTTATAATTATGCTCTTGGATTGTGTC
13223092 TAT
1 TAT
13223095 GTTTATATGA
Statistics
Matches: 180, Mismatches: 13, Indels: 9
0.89 0.06 0.04
Matches are distributed among these distances:
47 87 0.48
48 1 0.01
50 77 0.43
51 15 0.08
ACGTcount: A:0.30, C:0.12, G:0.08, T:0.50
Consensus pattern (50 bp):
TATCTAATATTAATATATACTTCTTTATAATTATGCTCTTGGATTGTGTC
Found at i:13223001 original size:97 final size:96
Alignment explanation
Indices: 13222847--13223094 Score: 338
Period size: 97 Copynumber: 2.5 Consensus size: 96
13222837 CTCTTTAATA
* * * *
13222847 TATCTAATATTAATATTACACTTCTTTTTAATCATGCTCTTGGATTATATCTATCTAATATTAAT
1 TATCTAATATTAATA-TATAC-TCTTTATAATTATGCTCTTGGATTGTATCTATCTAATATTAAT
* *
13222912 ATAAACTTCTTTATAATTATGCTCTTGGATTATGTC
64 AT--A-TACTTTATAATTATGCTCTTGGATTATGCC
* *
13222948 TATCTAATATTAATATATA-T-TTTATAATTATGCTCTTGGATTGTGTCTGTCTAATATTAATAT
1 TATCTAATATTAATATATACTCTTTATAATTATGCTCTTGGATTGTATCTATCTAATATTAATAT
* *
13223011 ATACTTTATAATTATTCTCTTGGATTGTGCC
66 ATACTTTATAATTATGCTCTTGGATTATGCC
13223042 TATCTAATATTAATATATACTTCTTTATAATTATGCTCTTGGATTGTATCTAT
1 TATCTAATATTAATATATAC-TCTTTATAATTATGCTCTTGGATTGTATCTAT
13223095 GTTTATATGA
Statistics
Matches: 132, Mismatches: 12, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
94 45 0.34
95 1 0.01
96 1 0.01
97 66 0.50
98 1 0.01
100 3 0.02
101 15 0.11
ACGTcount: A:0.30, C:0.12, G:0.08, T:0.50
Consensus pattern (96 bp):
TATCTAATATTAATATATACTCTTTATAATTATGCTCTTGGATTGTATCTATCTAATATTAATAT
ATACTTTATAATTATGCTCTTGGATTATGCC
Found at i:13224001 original size:2 final size:2
Alignment explanation
Indices: 13223994--13224025 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
13223984 TATCGATCTC
13223994 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13224026 TGGACATTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13226410 original size:19 final size:18
Alignment explanation
Indices: 13226368--13226412 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 18
13226358 TACGAATGAT
13226368 TTTTAAATTATATTAAAA
1 TTTTAAATTATATTAAAA
13226386 TATTTAATATTATATCT-AAA
1 T-TTTAA-ATTATAT-TAAAA
13226406 TTTTAAA
1 TTTTAAA
13226413 AATCGTTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
18 2 0.08
19 10 0.42
20 11 0.46
21 1 0.04
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTTAAATTATATTAAAA
Found at i:13227631 original size:2 final size:2
Alignment explanation
Indices: 13227626--13227671 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
13227616 TTTTTTTCCC
13227626 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
13227668 CT CT
1 CT CT
13227672 TTACCCAAAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:13228047 original size:20 final size:20
Alignment explanation
Indices: 13227984--13228055 Score: 85
Period size: 20 Copynumber: 3.5 Consensus size: 20
13227974 TCAAGCATAA
13227984 TTTTAAATTTT-TAAATGAT
1 TTTTAAATTTTGTAAATGAT
* *
13228003 TTTTAAAATCTTTGTATA-GAA
1 TTTT-AAAT-TTTGTAAATGAT
13228024 TTTTAAATTTTGTAAATGAT
1 TTTTAAATTTTGTAAATGAT
13228044 TTTTAAGATTTT
1 TTTTAA-ATTTT
13228056 TTTATATAGT
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
19 11 0.25
20 16 0.36
21 14 0.32
22 3 0.07
ACGTcount: A:0.35, C:0.01, G:0.08, T:0.56
Consensus pattern (20 bp):
TTTTAAATTTTGTAAATGAT
Found at i:13230938 original size:50 final size:50
Alignment explanation
Indices: 13230792--13230951 Score: 128
Period size: 50 Copynumber: 3.2 Consensus size: 50
13230782 GTCTTTCAAT
* * * * *
13230792 GATGAGATTTTTAAAATTTTATAACCTATGTTTAGGAGGAACCTTTTAAA
1 GATGAGATTTTTAAAATTTTAAAACTTATATTTAGAAAGAACCTTTTAAA
* * * * ** * *
13230842 GGTGAGA--TTTAAAGTTTTGAAGCTCCTATTTAGAAA-AAGTCATTTAAA
1 GATGAGATTTTTAAAATTTTAAAACTTATATTTAGAAAGAA-CCTTTTAAA
* * *
13230890 GATGAGATTTTTAAATTTTTAAAACTTTTATTAAGAAAGAACCTTTTAAA
1 GATGAGATTTTTAAAATTTTAAAACTTATATTTAGAAAGAACCTTTTAAA
* *
13230940 GATAAAATTTTT
1 GATGAGATTTTT
13230952 TATATATATT
Statistics
Matches: 82, Mismatches: 24, Indels: 8
0.72 0.21 0.07
Matches are distributed among these distances:
47 2 0.02
48 32 0.39
50 46 0.56
51 2 0.02
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.40
Consensus pattern (50 bp):
GATGAGATTTTTAAAATTTTAAAACTTATATTTAGAAAGAACCTTTTAAA
Found at i:13234351 original size:9 final size:9
Alignment explanation
Indices: 13234337--13234370 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
13234327 TCATTTTAAT
13234337 ATAATTTTA
1 ATAATTTTA
13234346 ATAATTTTA
1 ATAATTTTA
**
13234355 ATAATAATA
1 ATAATTTTA
13234364 ATAATTT
1 ATAATTT
13234371 AAAAAATAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (9 bp):
ATAATTTTA
Found at i:13234365 original size:18 final size:19
Alignment explanation
Indices: 13234344--13234384 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
13234334 AATATAATTT
* *
13234344 TAATAATTTTAATAAT-AA
1 TAATAATTTAAAAAATAAA
13234362 TAATAATTTAAAAAATAAA
1 TAATAATTTAAAAAATAAA
13234381 TAAT
1 TAAT
13234385 TATTAACTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
TAATAATTTAAAAAATAAA
Found at i:13234435 original size:8 final size:8
Alignment explanation
Indices: 13234395--13234437 Score: 50
Period size: 8 Copynumber: 5.0 Consensus size: 8
13234385 TATTAACTAT
13234395 ATAAAAAA
1 ATAAAAAA
*
13234403 ATAAATAA
1 ATAAAAAA
13234411 ATAACAAAA
1 ATAA-AAAA
13234420 TATAAAAAAA
1 -AT-AAAAAA
13234430 ATAAAAAA
1 ATAAAAAA
13234438 GTATGGTGGT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
8 17 0.57
9 5 0.17
10 6 0.20
11 2 0.07
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.16
Consensus pattern (8 bp):
ATAAAAAA
Found at i:13234528 original size:3 final size:3
Alignment explanation
Indices: 13234514--13234543 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
13234504 TTAAGTATAT
*
13234514 TAA TAC TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
13234544 ATATTTAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:13234570 original size:17 final size:16
Alignment explanation
Indices: 13234521--13234571 Score: 50
Period size: 17 Copynumber: 3.2 Consensus size: 16
13234511 TATTAATACT
* *
13234521 AATAATAATAA-TAAT
1 AATAATAAAAATTAAA
* *
13234536 AATAATAAATATTTAA
1 AATAATAAAAATTAAA
13234552 AATATATAAAAATTAAA
1 AATA-ATAAAAATTAAA
13234569 AAT
1 AAT
13234572 TAAATAAAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
15 9 0.32
16 6 0.21
17 13 0.46
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AATAATAAAAATTAAA
Found at i:13234668 original size:12 final size:12
Alignment explanation
Indices: 13234638--13234679 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
13234628 TGCCGCTGCC
*
13234638 GCCCCCTG-TCA
1 GCCCCCTGACCA
*
13234649 GCCTCCTGACCA
1 GCCCCCTGACCA
13234661 GCCCCCTGACCA
1 GCCCCCTGACCA
*
13234673 GCTCCCT
1 GCCCCCT
13234680 TTCAGCTCTC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
11 7 0.27
12 19 0.73
ACGTcount: A:0.12, C:0.55, G:0.17, T:0.17
Consensus pattern (12 bp):
GCCCCCTGACCA
Found at i:13236166 original size:15 final size:16
Alignment explanation
Indices: 13236137--13236169 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
13236127 AATTCACATT
*
13236137 AATAATAAGATTAATA
1 AATAATAAGAATAATA
13236153 AATAA-AAGAATAATA
1 AATAATAAGAATAATA
13236168 AA
1 AA
13236170 ACTGAGATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.24
Consensus pattern (16 bp):
AATAATAAGAATAATA
Found at i:13247337 original size:12 final size:12
Alignment explanation
Indices: 13247321--13247357 Score: 51
Period size: 10 Copynumber: 3.2 Consensus size: 12
13247311 AAATATATAC
13247321 AAAAAAATGAAA
1 AAAAAAATGAAA
13247333 CAAAAAAAT--AA
1 -AAAAAAATGAAA
13247344 AAAAAAATGAAA
1 AAAAAAATGAAA
13247356 AA
1 AA
13247358 GGAAGTGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
10 8 0.36
11 2 0.09
12 4 0.18
13 8 0.36
ACGTcount: A:0.84, C:0.03, G:0.05, T:0.08
Consensus pattern (12 bp):
AAAAAAATGAAA
Found at i:13248501 original size:35 final size:35
Alignment explanation
Indices: 13248457--13248605 Score: 129
Period size: 35 Copynumber: 4.2 Consensus size: 35
13248447 CCCGGTCATT
13248457 TCTTTAATTTTTGACTCACGGTTTAATCCCAATCA
1 TCTTTAATTTTTGACTCACGGTTTAATCCCAATCA
* *
13248492 TCTTTAATTTTTGACTAACGGTTTAATCCCGATCA
1 TCTTTAATTTTTGACTCACGGTTTAATCCCAATCA
* * ** * *** *
13248527 TTTCATTAATTCTCTCGACTTGCGGTTCAATTTTAGTCA
1 --TCTTTAATT-T-TTGACTCACGGTTTAATCCCAATCA
* * *
13248566 TCTTTAATCTTTGACTCGCGGTTTAATCCCGATCA
1 TCTTTAATTTTTGACTCACGGTTTAATCCCAATCA
13248601 T-TTTA
1 TCTTTA
13248606 TTGATTTCTC
Statistics
Matches: 88, Mismatches: 22, Indels: 9
0.74 0.18 0.08
Matches are distributed among these distances:
34 4 0.05
35 51 0.58
36 1 0.01
37 15 0.17
38 1 0.01
39 16 0.18
ACGTcount: A:0.23, C:0.21, G:0.11, T:0.44
Consensus pattern (35 bp):
TCTTTAATTTTTGACTCACGGTTTAATCCCAATCA
Found at i:13248588 original size:74 final size:73
Alignment explanation
Indices: 13248398--13248752 Score: 354
Period size: 74 Copynumber: 4.8 Consensus size: 73
13248388 TAATTGCCTA
* * * * * * * * *
13248398 ACTTGCGATTCAGTCCCAGTCGTCTTTAGTCTTTGGCTCGCTGTTTAATCCCGGTCATTTCTTTA
1 ACTTGCGGTTCAATCTCAGTCATCTTTAATCTTTGACTCGCGGTTTAATCCCGATCATTTCATTA
*
13248463 ATTT-TTG
66 ATTTCTCG
** * * * * **
13248470 ACTCACGGTTTAATCCCAATCATCTTTAATTTTTGACTAACGGTTTAATCCCGATCATTTCATTA
1 ACTTGCGGTTCAATCTCAGTCATCTTTAATCTTTGACTCGCGGTTTAATCCCGATCATTTCATTA
13248535 ATTCTCTCG
66 ATT-TCTCG
* * * *
13248544 ACTTGCGGTTCAATTTTAGTCATCTTTAATCTTTGACTCGCGGTTTAATCCCGATCATTTTATTG
1 ACTTGCGGTTCAATCTCAGTCATCTTTAATCTTTGACTCGCGGTTTAATCCCGATCATTTCATTA
13248609 ATTTCTCG
66 ATTTCTCG
* * * **
13248617 ACTTGCGGTTCAGTTTTAGTCATCTTTAATCTTTGACTCATGGTTTAATCCCGATCATTTCATTA
1 ACTTGCGGTTCAATCTCAGTCATCTTTAATCTTTGACTCGCGGTTTAATCCCGATCATTTCATTA
*
13248682 ATTCCCTCG
66 ATT-TCTCG
* * * * * *
13248691 ACTTGTGGTTTC-GTCTCAGTCATCTTTAATCCTTGACTAGCGGTGTCATCCCGATCACTTTC
1 ACTTGCGG-TTCAATCTCAGTCATCTTTAATCTTTGACTCGCGGTTTAATCCCGATCA-TTTC
13248753 TTTTATTCGA
Statistics
Matches: 235, Mismatches: 43, Indels: 7
0.82 0.15 0.02
Matches are distributed among these distances:
72 53 0.23
73 69 0.29
74 106 0.45
75 7 0.03
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.43
Consensus pattern (73 bp):
ACTTGCGGTTCAATCTCAGTCATCTTTAATCTTTGACTCGCGGTTTAATCCCGATCATTTCATTA
ATTTCTCG
Found at i:13248791 original size:147 final size:146
Alignment explanation
Indices: 13248487--13248751 Score: 352
Period size: 147 Copynumber: 1.8 Consensus size: 146
13248477 GTTTAATCCC
* *
13248487 AATCATCTTTAATTTTTGACTAACGGTTTAATCCCGATCATTTCATTAATTCTCTCGACTTGCGG
1 AATCATCTTTAATCTTTGACTAACGGTTTAATCCCGATCATTTCATTAATTCCCTCGACTTGCGG
* * * * * *
13248552 TTCAATTTTAGTCATCTTTAATCTTTGACTCGCGGTTTAATCCCGATCATTTTATTGATTTCTCG
66 TTCAATCTCAGTCATCTTTAATCCTTGACTAGCGGTGTAATCCCGATCACTTTATT-ATTTCTCG
* **
13248617 ACTTGCGGTTCAGTTTT
130 ACTTGAGGTTCAGCCTT
* * * *
13248634 AGTCATCTTTAATCTTTGACTCATGGTTTAATCCCGATCATTTCATTAATTCCCTCGACTTGTGG
1 AATCATCTTTAATCTTTGACTAACGGTTTAATCCCGATCATTTCATTAATTCCCTCGACTTGCGG
* *
13248699 TTTC-GTCTCAGTCATCTTTAATCCTTGACTAGCGGTGTCATCCCGATCACTTT
66 -TTCAATCTCAGTCATCTTTAATCCTTGACTAGCGGTGTAATCCCGATCACTTT
13248752 CTTTTATTCG
Statistics
Matches: 103, Mismatches: 14, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
147 100 0.97
148 3 0.03
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.43
Consensus pattern (146 bp):
AATCATCTTTAATCTTTGACTAACGGTTTAATCCCGATCATTTCATTAATTCCCTCGACTTGCGG
TTCAATCTCAGTCATCTTTAATCCTTGACTAGCGGTGTAATCCCGATCACTTTATTATTTCTCGA
CTTGAGGTTCAGCCTT
Found at i:13248991 original size:12 final size:12
Alignment explanation
Indices: 13248974--13249014 Score: 55
Period size: 12 Copynumber: 3.2 Consensus size: 12
13248964 CATTTTAAGT
*
13248974 ATATTAATACTA
1 ATATTAATAATA
13248986 ATATTAATAATA
1 ATATTAATAATA
13248998 ATTATATAATAATA
1 A-TAT-TAATAATA
13249012 ATA
1 ATA
13249015 AATATTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 12 0.46
13 5 0.19
14 9 0.35
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATTAATAATA
Found at i:13250224 original size:28 final size:28
Alignment explanation
Indices: 13250172--13250231 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
13250162 AATTGTTATT
*
13250172 AATAATAATAAAATGAAAATAATATTAA
1 AATAATAATAAAATAAAAATAATATTAA
*
13250200 AATAATAACTAAAA-AAATAATATATTTTAA
1 AATAATAA-TAAAATAAA-AATA-ATATTAA
13250230 AA
1 AA
13250232 ATGTTTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
28 10 0.37
29 9 0.33
30 8 0.30
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (28 bp):
AATAATAATAAAATAAAAATAATATTAA
Found at i:13251732 original size:24 final size:25
Alignment explanation
Indices: 13251672--13251720 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
13251662 CTTCCCTTAC
*
13251672 ACTCTCTCGGAACCCCTCTCAAAAA
1 ACTCTCTCGGACCCCCTCTCAAAAA
13251697 ACTCTCTCGGACCCCCTCTCAAAA
1 ACTCTCTCGGACCCCCTCTCAAAA
13251721 GCTGTCTCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.29, C:0.43, G:0.08, T:0.20
Consensus pattern (25 bp):
ACTCTCTCGGACCCCCTCTCAAAAA
Found at i:13252969 original size:16 final size:16
Alignment explanation
Indices: 13252950--13252998 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
13252940 TTAGGTTTCT
*
13252950 AAAACCCTTAAAATTC
1 AAAACCCTTAAAATCC
*
13252966 AAAACTTCTTAAAATCC
1 AAAAC-CCTTAAAATCC
* *
13252983 AAAATCCTAAAAATCC
1 AAAACCCTTAAAATCC
13252999 TAAGGACACA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
16 14 0.52
17 13 0.48
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.24
Consensus pattern (16 bp):
AAAACCCTTAAAATCC
Found at i:13257131 original size:25 final size:26
Alignment explanation
Indices: 13257101--13257161 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
13257091 TATTGATATA
13257101 ATTATTAAAATATA-AAAAATTATTT
1 ATTATTAAAATATATAAAAATTATTT
**
13257126 ATTATTAAAATATATTGAAATTATTT
1 ATTATTAAAATATATAAAAATTATTT
13257152 ATTATTAAAA
1 ATTATTAAAA
13257162 AAATTAATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
25 14 0.42
26 19 0.58
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (26 bp):
ATTATTAAAATATATAAAAATTATTT
Found at i:13257281 original size:15 final size:15
Alignment explanation
Indices: 13257263--13257569 Score: 81
Period size: 15 Copynumber: 19.3 Consensus size: 15
13257253 TATTATTCTT
13257263 TATATTATATATTAA
1 TATATTATATATTAA
*
13257278 TATATTATA-ACTTTA
1 TATATTATATA-TTAA
*
13257293 TTTATTAATAATATTTATCAA
1 TATATT-AT-ATA--T-T-AA
* *
13257314 TATATTATATTAATAG
1 TATATTATA-TATTAA
*
13257330 TATATTATTTATTAA
1 TATATTATATATTAA
* * *
13257345 TAATCTATTATTTACTCA
1 T-A--TATTATATATTAA
* *
13257363 TATATTAGTATAATATT
1 TATATTA-TATATTA-A
* *
13257380 TTTATT-TAAATTAA
1 TATATTATATATTAA
13257394 TAATATTCAT-TATT-A
1 T-ATATT-ATATATTAA
13257409 TATTATTTATTAATATATAA
1 TA-TA-TTA-T-ATAT-TAA
* *
13257429 TAATATTATTTCTTAA
1 T-ATATTATATATTAA
* *
13257445 TATATTATATTAATAT
1 TATATTATA-TATTAA
*
13257461 TATATTACT-TATTCA
1 TATATTA-TATATTAA
13257476 TAATTATTATATATTAA
1 T-A-TATTATATATTAA
* *
13257493 TTTATTATTTATTAA
1 TATATTATATATTAA
* *
13257508 TATATGATTTATTAA
1 TATATTATATATTAA
* *
13257523 TATAATAT-TATTTA
1 TATATTATATATTAA
*
13257537 TTTATTA-ATA-TAA
1 TATATTATATATTAA
* * *
13257550 TTTTATTATTTATTTA
1 -TATATTATATATTAA
13257566 TATA
1 TATA
13257570 ATATTATTTA
Statistics
Matches: 214, Mismatches: 45, Indels: 66
0.66 0.14 0.20
Matches are distributed among these distances:
13 2 0.01
14 22 0.10
15 88 0.41
16 40 0.19
17 23 0.11
18 17 0.08
19 6 0.03
20 9 0.04
21 7 0.03
ACGTcount: A:0.40, C:0.03, G:0.01, T:0.56
Consensus pattern (15 bp):
TATATTATATATTAA
Found at i:13257454 original size:20 final size:20
Alignment explanation
Indices: 13257249--13257580 Score: 137
Period size: 18 Copynumber: 16.4 Consensus size: 20
13257239 AAAGTAAAAC
* *
13257249 TATTTATTATTCT-TTATAT
1 TATTTATTAATATATTATAT
*
13257268 TATATATTAATATATTATAACTT
1 TATTTATTAATATATTAT-A--T
13257291 TATTTATTAATAATATTTATCAAT
1 TATTTATTAAT-ATA-TTAT--AT
*
13257315 ATATTATATT-A-ATAGTATAT
1 -TATT-TATTAATATATTATAT
*
13257335 TATTTATTAATA-A-TCTAT
1 TATTTATTAATATATTATAT
* *
13257353 TATTTACTCATATATTAGTAT
1 TATTTATTAATATATTA-TAT
* *
13257374 AATATT-TT--TAT-TTAAAT
1 TAT-TTATTAATATATTATAT
* *
13257391 TAATAATATTCAT-TATTATAT
1 T-AT-TTATTAATATATTATAT
13257412 TATTTATTAATATATAATAATAT
1 TATTTATTAATATAT--T-ATAT
*
13257435 TATTTCTTAATATATTATAT
1 TATTTATTAATATATTATAT
*
13257455 TA-ATATT-ATATTACTTAT-T
1 TATTTATTAATA-TA-TTATAT
*
13257474 CATAATTATT-ATATATTAATTTAT
1 --TATTTATTAATATATT-A--TAT
*
13257498 TATTTATTAATATATGAT-T
1 TATTTATTAATATATTATAT
*
13257517 TA-TTAAT-ATAATATTAT-T
1 TATTTATTAAT-ATATTATAT
*
13257535 TATTTATTAATATAATTTTAT
1 TATTTATTAATAT-ATTATAT
*
13257556 TATTTATT--TATATAATAT
1 TATTTATTAATATATTATAT
13257574 TATTTAT
1 TATTTAT
13257581 AAGTAAAATT
Statistics
Matches: 245, Mismatches: 29, Indels: 79
0.69 0.08 0.22
Matches are distributed among these distances:
17 4 0.02
18 53 0.22
19 46 0.19
20 33 0.13
21 29 0.12
22 21 0.09
23 39 0.16
24 5 0.02
25 9 0.04
26 6 0.02
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (20 bp):
TATTTATTAATATATTATAT
Found at i:13257518 original size:131 final size:123
Alignment explanation
Indices: 13257298--13257548 Score: 281
Period size: 131 Copynumber: 2.0 Consensus size: 123
13257288 CTTTATTTAT
* * *
13257298 TAATAATATTTATCAATATATTATATTAATAGTATATTATTTATTAATAATCTATTATTTACTCA
1 TAATAATATTTATCAATATATTATATTAATAGTATATTACTTATTAATAATCTATTATATACTAA
* *
13257363 TATATTAGTATAATATTTTTATTTAAATTAATAATATTCATTATTATATTATTTATTAATATATA
66 TATATTAGTATAATATTATGATTT--ATTAAT-ATA---A-TATTAT-TTATTTATTAATATATA
13257428 A
123 A
* * * * * *
13257429 TAATATTATTTCTTAATATATTATATTAATATTATATTACTTATTCATAAT-TATTATATATTAA
1 TAATAATATTTATCAATATATTATATTAATAGTATATTACTTATTAATAATCTATTATATACTAA
* *
13257493 TTTATTATTTATTAATA-TATGATTTATTAATATAATATTATTTATTTATTAATATA
66 TATATTA-GTA-TAATATTATGATTTATTAATATAATATTATTTATTTATTAATATA
13257549 ATTTTATTAT
Statistics
Matches: 105, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
123 15 0.14
124 6 0.06
125 1 0.01
128 3 0.03
129 6 0.06
130 16 0.15
131 53 0.50
132 5 0.05
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (123 bp):
TAATAATATTTATCAATATATTATATTAATAGTATATTACTTATTAATAATCTATTATATACTAA
TATATTAGTATAATATTATGATTTATTAATATAATATTATTTATTTATTAATATATAA
Done.