Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14313602
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 50000 characters in sequence are not A, C, G, or T
File 72 of 74
Found at i:13973497 original size:17 final size:17
Alignment explanation
Indices: 13973438--13973503 Score: 71
Period size: 17 Copynumber: 3.9 Consensus size: 17
13973428 TCTTGTGAAA
**
13973438 TTGAAATTCTTGTGAAC
1 TTGAAATTCTTGCAAAC
* *
13973455 TTAAAATTCTTGCAAAT
1 TTGAAATTCTTGCAAAC
13973472 TTG-AATTCTTGCAAAC
1 TTGAAATTCTTGCAAAC
* *
13973488 CTGAAATTCTTACAAA
1 TTGAAATTCTTGCAAA
13973504 TTTAAAAATT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
16 14 0.35
17 26 0.65
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (17 bp):
TTGAAATTCTTGCAAAC
Found at i:13973551 original size:52 final size:52
Alignment explanation
Indices: 13973471--13973579 Score: 137
Period size: 52 Copynumber: 2.1 Consensus size: 52
13973461 TTCTTGCAAA
* * * * * *
13973471 TTTGAATTCTTGCAAACCTGAAATTCTTACAAATTTAAAAATTTTGTGAATC
1 TTTGAATTCTTACAAACCTAAAAATCTTACAAATCTAAAAATCTTGCGAATC
* * *
13973523 TTTGAATTCTTACGAATCTAAAAATCTTACAAATCTAAAAGTCTTGCGAATC
1 TTTGAATTCTTACAAACCTAAAAATCTTACAAATCTAAAAATCTTGCGAATC
13973575 TTTGA
1 TTTGA
13973580 GTACTTGTAA
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.39
Consensus pattern (52 bp):
TTTGAATTCTTACAAACCTAAAAATCTTACAAATCTAAAAATCTTGCGAATC
Found at i:13973552 original size:17 final size:17
Alignment explanation
Indices: 13973530--13973575 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
13973520 ATCTTTGAAT
13973530 TCTTACGAATCTAAAAA
1 TCTTACGAATCTAAAAA
* *
13973547 TCTTACAAATCTAAAAG
1 TCTTACGAATCTAAAAA
*
13973564 TCTTGCGAATCT
1 TCTTACGAATCT
13973576 TTGAGTACTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33
Consensus pattern (17 bp):
TCTTACGAATCTAAAAA
Found at i:13973558 original size:35 final size:35
Alignment explanation
Indices: 13973492--13973558 Score: 80
Period size: 35 Copynumber: 1.9 Consensus size: 35
13973482 GCAAACCTGA
* * ***
13973492 AATTCTTACAAATTTAAAAATTTTGTGAATCTTTG
1 AATTCTTACAAATCTAAAAATCTTACAAATCTTTG
*
13973527 AATTCTTACGAATCTAAAAATCTTACAAATCT
1 AATTCTTACAAATCTAAAAATCTTACAAATCT
13973559 AAAAGTCTTG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
35 26 1.00
ACGTcount: A:0.40, C:0.13, G:0.06, T:0.40
Consensus pattern (35 bp):
AATTCTTACAAATCTAAAAATCTTACAAATCTTTG
Found at i:13974839 original size:3 final size:3
Alignment explanation
Indices: 13974831--13975132 Score: 223
Period size: 3 Copynumber: 101.7 Consensus size: 3
13974821 AATATTCATG
* * * * * * *
13974831 TAT TAT TAT TAT TAT TAT TGT TGT TGT TGT TAT CAT TAT CAT TAT CAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * * *
13974879 TAT TAT CAT CAT TAT CAT TAT TAT CAT CAT TAT TAT CAT CAT CAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
13974927 TAT CAT CAT TA- TAT TAT TAT TAT CAT TAT TAT CAT TAT CAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
13974974 AAT TAT TAT T-T CAT TAT TAT CAT TAT TAA TAT TAT TAT CAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * ** * * *
13975021 TA- TAT TAT CAT TAT CAT TAT AAT TAT CGT TAT CAT TAC CAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * **
13975068 TAT CAT TAT TAT TAT TAT TAT TAT CAT TAT CAT TAT CGT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
13975116 CAT TAT TAT CAT TAT TA
1 TAT TAT TAT TAT TAT TA
13975133 AATAAAAATA
Statistics
Matches: 232, Mismatches: 64, Indels: 6
0.77 0.21 0.02
Matches are distributed among these distances:
2 5 0.02
3 227 0.98
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.55
Consensus pattern (3 bp):
TAT
Found at i:13975277 original size:3 final size:3
Alignment explanation
Indices: 13975269--13975305 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
13975259 GGAGATTTCA
*
13975269 ATT ATT ATT ATT ATT ATT ATT GTT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
13975306 GTTTTTTATC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:13977846 original size:49 final size:49
Alignment explanation
Indices: 13977735--13977897 Score: 168
Period size: 49 Copynumber: 3.3 Consensus size: 49
13977725 ATATACAAAA
* * * * * *
13977735 GCTTTGGAACATTAAAATCCTATCTAAAAATTGCTCT-CATAAACAGAG
1 GCTTTGAAACTTTAAATTCCCATCTGAAAATGGCTCTCCATAAACAGAG
* * *
13977783 GCTTTGGAAA-TTTAAATTCCCATTTGCAAATGGCTCTCCATAAACGGAG
1 GCTTT-GAAACTTTAAATTCCCATCTGAAAATGGCTCTCCATAAACAGAG
* ** * *
13977832 GCTTTGCAACTTTAAATTTTCATCTGAAAATGGCTCTCTATAAACAGAA
1 GCTTTGAAACTTTAAATTCCCATCTGAAAATGGCTCTCCATAAACAGAG
*
13977881 ACTTTGAAACTTTAAAT
1 GCTTTGAAACTTTAAAT
13977898 ATCTTTTCTG
Statistics
Matches: 93, Mismatches: 19, Indels: 5
0.79 0.16 0.04
Matches are distributed among these distances:
48 28 0.30
49 65 0.70
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33
Consensus pattern (49 bp):
GCTTTGAAACTTTAAATTCCCATCTGAAAATGGCTCTCCATAAACAGAG
Found at i:13978893 original size:19 final size:19
Alignment explanation
Indices: 13978855--13978910 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
13978845 TTTTCAAATC
* **
13978855 TTTTCAATTTTTTTGGTTT
1 TTTTCATTTTTTTTCTTTT
*
13978874 TTTT-GTTTTTCTTTCTTTT
1 TTTTCATTTTT-TTTCTTTT
13978893 TTTTCATTTTTTTTCTTT
1 TTTTCATTTTTTTTCTTT
13978911 CGTTCATCTT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
18 4 0.13
19 21 0.70
20 5 0.17
ACGTcount: A:0.05, C:0.09, G:0.05, T:0.80
Consensus pattern (19 bp):
TTTTCATTTTTTTTCTTTT
Found at i:13978907 original size:10 final size:9
Alignment explanation
Indices: 13978871--13978910 Score: 53
Period size: 10 Copynumber: 4.2 Consensus size: 9
13978861 ATTTTTTTGG
*
13978871 TTTTTTTGT
1 TTTTTTTCT
13978880 TTTTCTTTCT
1 TTTT-TTTCT
13978890 TTTTTTTCAT
1 TTTTTTTC-T
13978900 TTTTTTTCT
1 TTTTTTTCT
13978909 TT
1 TT
13978911 CGTTCATCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 11 0.39
10 17 0.61
ACGTcount: A:0.03, C:0.10, G:0.03, T:0.85
Consensus pattern (9 bp):
TTTTTTTCT
Found at i:13994916 original size:16 final size:15
Alignment explanation
Indices: 13994895--13994924 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
13994885 GAAACACATA
13994895 ATATAAATGAATCATC
1 ATATAAATG-ATCATC
13994911 ATATAAATGATCAT
1 ATATAAATGATCAT
13994925 TATAAGGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.50, C:0.10, G:0.07, T:0.33
Consensus pattern (15 bp):
ATATAAATGATCATC
Found at i:13997306 original size:24 final size:24
Alignment explanation
Indices: 13997279--13997336 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
13997269 ATATATATTT
*
13997279 ATTATTTTGTTAAA-TTTAAATAAA
1 ATTATTTT-TAAAATTTTAAATAAA
* * *
13997303 ATTATTATTAAAATTTTAAATTAT
1 ATTATTTTTAAAATTTTAAATAAA
13997327 ATTATTTTTA
1 ATTATTTTTA
13997337 TATTATATTT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
23 4 0.14
24 24 0.86
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (24 bp):
ATTATTTTTAAAATTTTAAATAAA
Found at i:14000732 original size:2 final size:2
Alignment explanation
Indices: 14000725--14000755 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
14000715 GCACTACTTT
14000725 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14000756 GTGCTAAAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14001289 original size:13 final size:14
Alignment explanation
Indices: 14001271--14001300 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
14001261 ATTATTATTA
14001271 TTTTCTTTT-TTCT
1 TTTTCTTTTCTTCT
14001284 TTTTCTTTTCTTCT
1 TTTTCTTTTCTTCT
14001298 TTT
1 TTT
14001301 GTGTTTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTCTTTTCTTCT
Found at i:14001386 original size:17 final size:18
Alignment explanation
Indices: 14001374--14001472 Score: 60
Period size: 19 Copynumber: 5.3 Consensus size: 18
14001364 AGTTATTTAT
14001374 TTTATTTTATTATTATTA
1 TTTATTTTATTATTATTA
* *
14001392 TTTTTTGTTAATATT-TATA
1 TTTATT-TTATTATTAT-TA
* *
14001411 TGTAATTTATTTATATAGTTA
1 TTTATTTTA-TTAT-TA-TTA
* *
14001432 TATA-TGTATTATTATTA
1 TTTATTTTATTATTATTA
14001449 TATTATTATTATTATTATT-
1 T-TTATT-TTATTATTATTA
14001468 TTTAT
1 TTTAT
14001473 AATATATTTT
Statistics
Matches: 62, Mismatches: 10, Indels: 18
0.69 0.11 0.20
Matches are distributed among these distances:
17 4 0.06
18 17 0.27
19 21 0.34
20 14 0.23
21 5 0.08
22 1 0.02
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (18 bp):
TTTATTTTATTATTATTA
Found at i:14001388 original size:3 final size:3
Alignment explanation
Indices: 14001370--14001472 Score: 58
Period size: 3 Copynumber: 34.3 Consensus size: 3
14001360 ATTTAGTTAT
* *
14001370 TTA TT- TTA TT- TTA TTA TTA TTA TT- TT- TTG TTA ATA TT- TATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
*
14001411 TGTA AT- TTA TTTA TATA GTTA TATA TGTA TTA TTA TTA -TA TTA TTA
1 T-TA TTA TTA -TTA T-TA -TTA T-TA T-TA TTA TTA TTA TTA TTA TTA
*
14001457 TTA TTA TTA TTT TTA T
1 TTA TTA TTA TTA TTA T
14001473 AATATATTTT
Statistics
Matches: 80, Mismatches: 9, Indels: 22
0.72 0.08 0.20
Matches are distributed among these distances:
2 12 0.15
3 51 0.64
4 16 0.20
5 1 0.01
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:14001406 original size:13 final size:14
Alignment explanation
Indices: 14001376--14001469 Score: 52
Period size: 14 Copynumber: 6.4 Consensus size: 14
14001366 TTATTTATTT
*
14001376 TATTTTATTATTAT
1 TATTTTATTATTAA
*
14001390 TATTTT-TTGTTAA
1 TATTTTATTATTAA
14001403 TA-TTTA-TATGTAA
1 TATTTTATTAT-TAA
*
14001416 TTTATTTATATAGTTATA
1 TAT-TTTAT-TA-TTA-A
14001434 TATGTATTATTATT-A
1 TAT-T-TTATTATTAA
*
14001449 TATTATTATTATTAT
1 TATT-TTATTATTAA
14001464 TATTTT
1 TATTTT
14001470 TATAATATAT
Statistics
Matches: 63, Mismatches: 7, Indels: 20
0.70 0.08 0.22
Matches are distributed among these distances:
12 5 0.08
13 11 0.17
14 18 0.29
15 12 0.19
17 6 0.10
18 7 0.11
19 4 0.06
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (14 bp):
TATTTTATTATTAA
Found at i:14001949 original size:31 final size:32
Alignment explanation
Indices: 14001914--14001984 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 32
14001904 AATTTTCAGA
** *
14001914 TTCCGGCGAA-AATTCCGACGAAGTTTGAATT
1 TTCCGGCGAACAATTCCGACGAACATTGAAGT
* *
14001945 TTCCGGC-AACAATTTCGGCGAACATTGAAGT
1 TTCCGGCGAACAATTCCGACGAACATTGAAGT
14001976 TTCCGGCGA
1 TTCCGGCGA
14001985 CCAGCCCAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
30 2 0.06
31 30 0.91
32 1 0.03
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (32 bp):
TTCCGGCGAACAATTCCGACGAACATTGAAGT
Found at i:14002059 original size:80 final size:80
Alignment explanation
Indices: 14001933--14002095 Score: 299
Period size: 80 Copynumber: 2.0 Consensus size: 80
14001923 AAATTCCGAC
*
14001933 GAAGTTTGAATTTTCCGGCAACAATTTCGGCGAACATTGAAGTTTCCGGCGACCAGCCCAGTTTT
1 GAAGTTTGAATTTTCCGGCAACAATTCCGGCGAACATTGAAGTTTCCGGCGACCAGCCCAGTTTT
14001998 CGACGAAGATTCCCA
66 CGACGAAGATTCCCA
* *
14002013 GAAGTTTGAATTTTTCGGCTACAATTCCGGCGAACATTGAAGTTTCCGGCGACCAGCCCAGTTTT
1 GAAGTTTGAATTTTCCGGCAACAATTCCGGCGAACATTGAAGTTTCCGGCGACCAGCCCAGTTTT
14002078 CGACGAAGATTCCCA
66 CGACGAAGATTCCCA
14002093 GAA
1 GAA
14002096 ACCGGCGATC
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 80 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (80 bp):
GAAGTTTGAATTTTCCGGCAACAATTCCGGCGAACATTGAAGTTTCCGGCGACCAGCCCAGTTTT
CGACGAAGATTCCCA
Found at i:14002150 original size:20 final size:20
Alignment explanation
Indices: 14002125--14002162 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
14002115 ACTTTCGATG
*
14002125 AAATTTCCAGATTCCGGCGA
1 AAATTTCCAGAATCCGGCGA
*
14002145 AAATTTCTAGAATCCGGC
1 AAATTTCCAGAATCCGGC
14002163 ACCGGTGTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (20 bp):
AAATTTCCAGAATCCGGCGA
Found at i:14002505 original size:16 final size:15
Alignment explanation
Indices: 14002466--14002519 Score: 65
Period size: 16 Copynumber: 3.6 Consensus size: 15
14002456 CTGCTCCAGG
* *
14002466 TTTTTGTTT-TTTTT
1 TTTTTATTTGTTTAT
*
14002480 TTTTTTTTTGTTTAT
1 TTTTTATTTGTTTAT
14002495 TTGTTTATTTGTTTAT
1 TT-TTTATTTGTTTAT
14002511 TTTTTATTT
1 TTTTTATTT
14002520 ATTAGTTTAG
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
14 8 0.23
15 13 0.37
16 14 0.40
ACGTcount: A:0.07, C:0.00, G:0.07, T:0.85
Consensus pattern (15 bp):
TTTTTATTTGTTTAT
Found at i:14002521 original size:27 final size:27
Alignment explanation
Indices: 14002468--14002528 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
14002458 GCTCCAGGTT
* * *
14002468 TTTGTTT-TTTTTTTTTTTTTTGTTTA
1 TTTGTTTATTTGTTTATTTTTTATTTA
14002494 TTTGTTTATTTGTTTATTTTTTATTTA
1 TTTGTTTATTTGTTTATTTTTTATTTA
*
14002521 TTAGTTTA
1 TTTGTTTA
14002529 GGTTTATGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 7 0.23
27 23 0.77
ACGTcount: A:0.11, C:0.00, G:0.08, T:0.80
Consensus pattern (27 bp):
TTTGTTTATTTGTTTATTTTTTATTTA
Found at i:14002528 original size:8 final size:8
Alignment explanation
Indices: 14002486--14002519 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
14002476 TTTTTTTTTT
14002486 TTTGTTTA
1 TTTGTTTA
14002494 TTTGTTTA
1 TTTGTTTA
14002502 TTTGTTTA
1 TTTGTTTA
14002510 TTT-TTTA
1 TTTGTTTA
14002517 TTT
1 TTT
14002520 ATTAGTTTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 7 0.27
8 19 0.73
ACGTcount: A:0.12, C:0.00, G:0.09, T:0.79
Consensus pattern (8 bp):
TTTGTTTA
Found at i:14002631 original size:27 final size:27
Alignment explanation
Indices: 14002601--14002689 Score: 65
Period size: 27 Copynumber: 3.2 Consensus size: 27
14002591 AAAAAAAAAT
14002601 ATTTTTAGGGAAAAGTTGAAAGTATCA
1 ATTTTTAGGGAAAAGTTGAAAGTATCA
** * * **
14002628 ATTTTCCTTAGAAATAAATTTCCAAAAAAT--
1 A-TTT--TTAGGGA-AAAGTT-GAAAGTATCA
14002658 ATTTTTAGGGAAAAGTTGAAAGTATCA
1 ATTTTTAGGGAAAAGTTGAAAGTATCA
14002685 ATTTT
1 ATTTT
14002690 CCTTAAAAGA
Statistics
Matches: 43, Mismatches: 12, Indels: 14
0.62 0.17 0.20
Matches are distributed among these distances:
25 5 0.12
26 5 0.12
27 11 0.26
28 3 0.07
29 3 0.07
30 6 0.14
31 5 0.12
32 5 0.12
ACGTcount: A:0.42, C:0.07, G:0.15, T:0.37
Consensus pattern (27 bp):
ATTTTTAGGGAAAAGTTGAAAGTATCA
Found at i:14002655 original size:60 final size:60
Alignment explanation
Indices: 14002592--14002999 Score: 523
Period size: 59 Copynumber: 6.7 Consensus size: 60
14002582 AAAATTCCAA
14002592 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAATAAATTTCC
1 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAATAAATTTCC
14002651 --AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAGAAAAATAAATTTCC
1 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT---AG-AAAATAAATTTCC
*
14002713 AAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAGAAAAATAAATTTT
1 --AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT---AG-AAAATAAATTTC
14002778 C
60 C
* *
14002779 AAAAAAAGTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATCAAAATTT-C
1 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAAT--AAATTTCC
* * *
14002839 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAG-AAATAAATTTTC
1 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAATAAATTTCC
*
14002898 AAAAAAAGA-GTTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATCGAAATTTCC
1 AAAAAAA-ATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAAT--AAATTTCC
*
14002959 --AAAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
14003000 CTACACAAAA
Statistics
Matches: 319, Mismatches: 10, Indels: 40
0.86 0.03 0.11
Matches are distributed among these distances:
57 43 0.13
58 9 0.03
59 84 0.26
60 53 0.17
61 14 0.04
62 12 0.04
64 43 0.13
66 61 0.19
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.33
Consensus pattern (60 bp):
AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAATAAATTTCC
Found at i:14006912 original size:8 final size:8
Alignment explanation
Indices: 14006874--14006911 Score: 60
Period size: 8 Copynumber: 4.9 Consensus size: 8
14006864 AAAGAAAGAA
14006874 GAAAAAAT
1 GAAAAAAT
*
14006882 GAGAAAAT
1 GAAAAAAT
14006890 GAAAAAAT
1 GAAAAAAT
14006898 GAAAAAAT
1 GAAAAAAT
14006906 -AAAAAA
1 GAAAAAA
14006912 AAAAGTTCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.76, C:0.00, G:0.13, T:0.11
Consensus pattern (8 bp):
GAAAAAAT
Found at i:14008163 original size:41 final size:40
Alignment explanation
Indices: 14008088--14008415 Score: 511
Period size: 40 Copynumber: 8.1 Consensus size: 40
14008078 GTCTAGGAGT
14008088 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
*
14008128 ATTTACTTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAGTTCGT--TGCCTCTGTTTAGAGGAGCA
* *
14008169 ATTTACTTTCCAAAG-TCGTGGTACCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAGTTCGT--TGCCTCTGTTTAGAGGAGCA
14008210 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
* *
14008250 ATTTACTTTTCAAAG-TCGTGGTGCCTCTGTTTAAATGAGCA
1 ATTTACTTTTCAAAGTTCGT--TGCCTCTGTTTAGAGGAGCA
14008291 ATTTACTTTTTC-AAGTTCGTTGCCTCTGTTTAGAGGAGCA
1 ATTTAC-TTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
14008331 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
*
14008371 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGATGAGCA
1 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
14008411 ATTTA
1 ATTTA
14008416 GTTCCAAAGT
Statistics
Matches: 271, Mismatches: 9, Indels: 16
0.92 0.03 0.05
Matches are distributed among these distances:
39 13 0.05
40 144 0.53
41 101 0.37
42 13 0.05
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.39
Consensus pattern (40 bp):
ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
Found at i:14008243 original size:81 final size:81
Alignment explanation
Indices: 14008088--14008434 Score: 528
Period size: 81 Copynumber: 4.3 Consensus size: 81
14008078 GTCTAGGAGT
*
14008088 ATTTACTTTTCAAAGTTCGT--TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAG-TCGTGGT
1 ATTTACTTTTCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGT--T
14008150 GCCTCTGTTTAGAGGAGCA
63 GCCTCTGTTTAGAGGAGCA
* *
14008169 ATTTACTTTCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGCC
1 ATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGCC
14008234 TCTGTTTAGAGGAGCA
66 TCTGTTTAGAGGAGCA
* *
14008250 ATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAAATGAGCAATTTACTTTTTC-AAGTTCGTTGC
1 ATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAC-TTTTCAAAGTTCGTTGC
14008314 CTCTGTTTAGAGGAGCA
65 CTCTGTTTAGAGGAGCA
14008331 ATTTACTTTTCAAAGTTCGT--TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGC
1 ATTTACTTTTCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGC
*
14008394 CTCTGTTTAGATGAGCA
65 CTCTGTTTAGAGGAGCA
* *
14008411 ATTTA-GTTCCAAAGTCGTGGTGCC
1 ATTTACTTTTCAAAGTCGTGGTGCC
14008435 CCTAGCTTTG
Statistics
Matches: 246, Mismatches: 12, Indels: 17
0.89 0.04 0.06
Matches are distributed among these distances:
78 4 0.02
79 12 0.05
80 64 0.26
81 120 0.49
82 42 0.17
83 4 0.02
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.39
Consensus pattern (81 bp):
ATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGCC
TCTGTTTAGAGGAGCA
Found at i:14008681 original size:13 final size:14
Alignment explanation
Indices: 14008663--14008692 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
14008653 ATTATTATTA
14008663 TTTTCTTTT-TTCT
1 TTTTCTTTTCTTCT
14008676 TTTTCTTTTCTTCT
1 TTTTCTTTTCTTCT
14008690 TTT
1 TTT
14008693 GTGTTTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTCTTTTCTTCT
Found at i:14008827 original size:25 final size:24
Alignment explanation
Indices: 14008792--14008862 Score: 69
Period size: 25 Copynumber: 3.0 Consensus size: 24
14008782 TTTTTTGTTA
14008792 ATATT-TATATGTAAT-TTATTTAT
1 ATATTATATATGTAATATTA-TTAT
*
14008815 ATAGTTATATATGTATTATTATTAT
1 ATA-TTATATATGTAATATTATTAT
* *
14008840 ATATTAT-TAT-TATTATTTTTAT
1 ATATTATATATGTAATATTATTAT
14008862 A
1 A
14008863 ATATATTTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
22 12 0.28
23 6 0.14
24 6 0.14
25 16 0.37
26 3 0.07
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (24 bp):
ATATTATATATGTAATATTATTAT
Found at i:14008836 original size:3 final size:3
Alignment explanation
Indices: 14008828--14008861 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
14008818 GTTATATATG
*
14008828 TAT TAT TAT TAT ATAT TAT TAT TAT TAT TTT TAT
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT
14008862 AATATATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:14008869 original size:22 final size:22
Alignment explanation
Indices: 14008820--14008869 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
14008810 TTTATATAGT
14008820 TATA-TATGTATTATTATTATA
1 TATATTATGTATTATTATTATA
*
14008841 TATTATTAT-TATTATTTTTATAA
1 TA-TATTATGTATTATTATTAT-A
14008864 TATATT
1 TATATT
14008870 TTTGGGTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 2 0.08
22 17 0.68
23 6 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (22 bp):
TATATTATGTATTATTATTATA
Found at i:14008872 original size:13 final size:13
Alignment explanation
Indices: 14008811--14008869 Score: 61
Period size: 13 Copynumber: 4.7 Consensus size: 13
14008801 TGTAATTTAT
14008811 TTATATAGTTA-TA
1 TTATATA-TTATTA
*
14008824 -TATGTATTATTA
1 TTATATATTATTA
14008836 TTATATATTATTA
1 TTATATATTATTA
*
14008849 TTAT-TATTTTTA
1 TTATATATTATTA
*
14008861 TAATATATT
1 TTATATATT
14008870 TTTGGGTTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
11 3 0.08
12 17 0.44
13 19 0.49
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (13 bp):
TTATATATTATTA
Found at i:14009365 original size:31 final size:31
Alignment explanation
Indices: 14009306--14009370 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
14009296 AATTTCTAGA
* ** *
14009306 TTCCGACGAAAATTCTGACGAAGTTTGAATT
1 TTCCGACGAAAATTCCGACGAACATTGAAGT
14009337 TTCCGAC-AACAATTCCGACGAACATTGAAGT
1 TTCCGACGAA-AATTCCGACGAACATTGAAGT
14009368 TTC
1 TTC
14009371 TGGCGACCAG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 2 0.07
31 27 0.93
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (31 bp):
TTCCGACGAAAATTCCGACGAACATTGAAGT
Found at i:14009410 original size:80 final size:80
Alignment explanation
Indices: 14009306--14009487 Score: 292
Period size: 80 Copynumber: 2.3 Consensus size: 80
14009296 AATTTCTAGA
* **
14009306 TTCCGACGAAAATTCTGACGAAGTTTGAATTTTCCGACAACAATTCCGACGAACATTGAAGTTTC
1 TTCCGACGAAGATTCCCA-GAAGTTTGAATTTTCCGACAACAATTCCGACGAACATTGAAGTTTC
*
14009371 TGGCGACCAGCCCAGT
65 CGGCGACCAGCCCAGT
* *
14009387 TTCCGACGAAGATTCCCAGAAGTTTGAATTTTCCGACTACAATTCCGGCGAACATTGAAGTTTCC
1 TTCCGACGAAGATTCCCAGAAGTTTGAATTTTCCGACAACAATTCCGACGAACATTGAAGTTTCC
14009452 GGCGACCAGCCCAGT
66 GGCGACCAGCCCAGT
*
14009467 TTCCGGCGAAGATTCCCAGAA
1 TTCCGACGAAGATTCCCAGAA
14009488 ACCGGCGATC
Statistics
Matches: 94, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
80 79 0.84
81 15 0.16
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (80 bp):
TTCCGACGAAGATTCCCAGAAGTTTGAATTTTCCGACAACAATTCCGACGAACATTGAAGTTTCC
GGCGACCAGCCCAGT
Found at i:14009513 original size:80 final size:79
Alignment explanation
Indices: 14009332--14009518 Score: 241
Period size: 80 Copynumber: 2.3 Consensus size: 79
14009322 GACGAAGTTT
* *
14009332 GAATTTTCCGACAACAATTCCGACGAACATTGAAGTTTCTGGCGACCAGCCCAGTTTCCGACGAA
1 GAATCTTCCGAC-ACAATTCCGACGAACATTGAAGTTTCCGGCGACCAGCCCAGTTTCCGACGAA
****
14009397 GATTCCCAGAAGTTT
65 GATTCCCAGAAACCG
* * *
14009412 GAATTTTCCGACTACAATTCCGGCGAACATTGAAGTTTCCGGCGACCAGCCCAGTTTCCGGCGAA
1 GAATCTTCCGAC-ACAATTCCGACGAACATTGAAGTTTCCGGCGACCAGCCCAGTTTCCGACGAA
14009477 GATTCCCAGAAACCG
65 GATTCCCAGAAACCG
*
14009492 GCGATCTTCCGAC-CAACTTCCGACGAA
1 G-AATCTTCCGACACAA-TTCCGACGAA
14009519 ATTTTTAGAT
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
79 3 0.03
80 82 0.87
81 9 0.10
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.22
Consensus pattern (79 bp):
GAATCTTCCGACACAATTCCGACGAACATTGAAGTTTCCGGCGACCAGCCCAGTTTCCGACGAAG
ATTCCCAGAAACCG
Found at i:14009552 original size:20 final size:19
Alignment explanation
Indices: 14009510--14009552 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
14009500 CCGACCAACT
* *
14009510 TCCGACGAAATTTTTAGAT
1 TCCGACGAAATTTTCAGAA
14009529 TCCGACGAAAATTTTCAGAA
1 TCCGACG-AAATTTTCAGAA
14009549 TCCG
1 TCCG
14009553 GCACCGGTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (19 bp):
TCCGACGAAATTTTCAGAA
Found at i:14010260 original size:59 final size:59
Alignment explanation
Indices: 14009927--14010330 Score: 495
Period size: 59 Copynumber: 6.7 Consensus size: 59
14009917 AAATTCCAAA
14009927 AAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAATAAATTTTC
1 AAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAATAAATTTTC
* * *
14009985 -AGAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAGAAAAATAAATTTCC
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT---AG-AAAATAAATTTTC
*
14010047 AAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAGAAAAATAAATTTC
1 --AAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTT---AG-AAAATAAATTTT
14010111 C
59 C
* *
14010112 AAAAAAAGTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATCAAAATTTC
1 AAAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAAT-AAATTTTC
14010172 AAAAAAAATATTTTTG-GTGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAATAAATTTTC
1 -AAAAAAATATTTTTGAG-GAAAAGTTGAAAGTATCAATTTTCCTTAGAAAATAAATTTTC
*
14010231 AAAAAAAGAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATCGAAATTTTC
1 AAAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAAT--AAATTTTC
14010292 -AAAAAATATTTTTG-GAGAAAAGTTGAAAGTATCAATTTT
1 AAAAAAATATTTTTGAG-GAAAAGTTGAAAGTATCAATTTT
14010331 TCCTACACAA
Statistics
Matches: 315, Mismatches: 9, Indels: 43
0.86 0.02 0.12
Matches are distributed among these distances:
57 40 0.13
58 11 0.03
59 79 0.25
60 56 0.18
61 16 0.05
62 11 0.03
63 7 0.02
64 36 0.11
65 59 0.19
ACGTcount: A:0.46, C:0.07, G:0.13, T:0.34
Consensus pattern (59 bp):
AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAATAAATTTTC
Found at i:14014444 original size:59 final size:59
Alignment explanation
Indices: 14014368--14014480 Score: 172
Period size: 59 Copynumber: 1.9 Consensus size: 59
14014358 CATCATCATG
* * * *
14014368 TGTAACTAATCCTATAACCAATCCTGTTCAATAACTAATTTAACTGTTATTTATGTTAA
1 TGTAACTAATCCCATAACCAATCCTGTTCAAGAACTAACTTAACTATTATTTATGTTAA
**
14014427 TGTAACTAATCCCATAACTGATCCTGTTCAAGAACTAACTTAACTATTATTTAT
1 TGTAACTAATCCCATAACCAATCCTGTTCAAGAACTAACTTAACTATTATTTAT
14014481 ATTTATTAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
59 48 1.00
ACGTcount: A:0.35, C:0.19, G:0.07, T:0.39
Consensus pattern (59 bp):
TGTAACTAATCCCATAACCAATCCTGTTCAAGAACTAACTTAACTATTATTTATGTTAA
Found at i:14017126 original size:20 final size:19
Alignment explanation
Indices: 14017087--14017126 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
14017077 GTTATCAGAG
* *
14017087 AATGAAATTTTCAAAGCAA
1 AATGAAAATTTCAAACCAA
14017106 AATGAAAATTTCAAAACCAA
1 AATGAAAATTTC-AAACCAA
14017126 A
1 A
14017127 GTAAGTAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.57, C:0.12, G:0.07, T:0.23
Consensus pattern (19 bp):
AATGAAAATTTCAAACCAA
Found at i:14021295 original size:20 final size:20
Alignment explanation
Indices: 14021254--14021296 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
14021244 AATGCAAGTG
* *
14021254 ATTTTTTTTCTTTTTTTATT
1 ATTTTTTATCTTTATTTATT
14021274 ATTTTTTATCTTTGATTT-TT
1 ATTTTTTATCTTT-ATTTATT
14021294 ATT
1 ATT
14021297 AAAAAAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 17 0.85
21 3 0.15
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (20 bp):
ATTTTTTATCTTTATTTATT
Found at i:14022742 original size:26 final size:25
Alignment explanation
Indices: 14022698--14022748 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
14022688 TTTTTGCTTT
** *
14022698 GCTTTCTCTTTATCTAAAAGAGAAA
1 GCTTTCTCTTTATAAAAAAAAGAAA
14022723 GCTTCTCTCTTTATAAAAAAAAGAAA
1 GCTT-TCTCTTTATAAAAAAAAGAAA
14022749 AGCCCAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 4 0.18
26 18 0.82
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33
Consensus pattern (25 bp):
GCTTTCTCTTTATAAAAAAAAGAAA
Found at i:14023404 original size:3 final size:3
Alignment explanation
Indices: 14023398--14023426 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
14023388 ATAAAGATGA
14023398 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
14023427 ACAAAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:14023960 original size:30 final size:29
Alignment explanation
Indices: 14023852--14023952 Score: 98
Period size: 30 Copynumber: 3.4 Consensus size: 29
14023842 ATTTATATTA
*
14023852 AGGG-TTTATTTAAGTATAAATTAAAAATTA
1 AGGGATTTATTTAA-TATAAATT-AAAATTT
* *
14023882 AGAGA-TTATTTGAATATAAATTAAAAGTT
1 AGGGATTTATTT-AATATAAATTAAAATTT
* * *
14023911 ATGAATTTATTTAGATGTAAATTAAAATTT
1 AGGGATTTATTTA-ATATAAATTAAAATTT
14023941 AGGGATTTATTT
1 AGGGATTTATTT
14023953 TAATGTAATA
Statistics
Matches: 57, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
29 8 0.14
30 47 0.82
31 2 0.04
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.43
Consensus pattern (29 bp):
AGGGATTTATTTAATATAAATTAAAATTT
Found at i:14036450 original size:17 final size:17
Alignment explanation
Indices: 14036409--14036454 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
14036399 GAAGTCAAGG
*
14036409 TTCATTTATTTTTATTTT
1 TTCATTT-TTTTTATTTC
* *
14036427 TTTATTTTTTTTCTTTC
1 TTCATTTTTTTTATTTC
14036444 TTCATTTTTTT
1 TTCATTTTTTT
14036455 GGTTCAACGG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 18 0.75
18 6 0.25
ACGTcount: A:0.11, C:0.09, G:0.00, T:0.80
Consensus pattern (17 bp):
TTCATTTTTTTTATTTC
Found at i:14040889 original size:18 final size:19
Alignment explanation
Indices: 14040866--14040904 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
14040856 TTAAGATAAG
14040866 TTAAAAT-TAAAATAAAAT
1 TTAAAATATAAAATAAAAT
*
14040884 TTAAAATATAAAGTAAAAT
1 TTAAAATATAAAATAAAAT
14040903 TT
1 TT
14040905 TCGCAAGTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (19 bp):
TTAAAATATAAAATAAAAT
Found at i:14046872 original size:156 final size:155
Alignment explanation
Indices: 14046683--14046994 Score: 570
Period size: 156 Copynumber: 2.0 Consensus size: 155
14046673 AATATATGCA
*
14046683 TTTGTTGAATTTTTTGCTTTTATCATATTTATTTAATCATTTCAAACTTGTTTGAATGGTTTTAA
1 TTTGTTGAATTTTGTGCTTTTATCATATTTATTTAATCATTTCAAACTTGTTTGAATGGTTTTAA
* *
14046748 TGCATAAACCTTGTCTAAACATATTTCCATAACATAAGTTTTAAAAGGAGTAAAGTTAGAACATT
66 TGCATAAACCTTGTCCAAACATATTTCCATAACATAAGTTTTAAAAAGAGTAAAGTTAGAACATT
14046813 TTCAAAATCATGCCAAAAAGTTGCT
131 TTCAAAATCATGCCAAAAAGTTGCT
14046838 TTTGTTGAATATTTGTGCTTTTATCATATTTATTTAATCATTTCAAACTTGTTTGAATGGTTTTA
1 TTTGTTGAAT-TTTGTGCTTTTATCATATTTATTTAATCATTTCAAACTTGTTTGAATGGTTTTA
* *
14046903 ATGCATAAACCTTGTCCAAACATATTTTCATAATATAAGTTTTAAAAAGAGTAAAGTTAGAACAT
65 ATGCATAAACCTTGTCCAAACATATTTCCATAACATAAGTTTTAAAAAGAGTAAAGTTAGAACAT
14046968 TTTCAAAATCATGCCAAAAAGTTGCT
130 TTTCAAAATCATGCCAAAAAGTTGCT
14046994 T
1 T
14046995 CAAAATGTTT
Statistics
Matches: 151, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
155 10 0.07
156 141 0.93
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.42
Consensus pattern (155 bp):
TTTGTTGAATTTTGTGCTTTTATCATATTTATTTAATCATTTCAAACTTGTTTGAATGGTTTTAA
TGCATAAACCTTGTCCAAACATATTTCCATAACATAAGTTTTAAAAAGAGTAAAGTTAGAACATT
TTCAAAATCATGCCAAAAAGTTGCT
Found at i:14047419 original size:13 final size:14
Alignment explanation
Indices: 14047397--14047425 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
14047387 ACTTTTGATG
14047397 TTTGATTTTTGACT
1 TTTGATTTTTGACT
14047411 TTTGA-TTTTGACT
1 TTTGATTTTTGACT
14047424 TT
1 TT
14047426 GACCATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.14, C:0.07, G:0.14, T:0.66
Consensus pattern (14 bp):
TTTGATTTTTGACT
Found at i:14049708 original size:16 final size:16
Alignment explanation
Indices: 14049689--14049723 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
14049679 CTTGATCACA
*
14049689 TATCTTTAACAATTGG
1 TATCCTTAACAATTGG
*
14049705 TATCCTTAACATTTGG
1 TATCCTTAACAATTGG
14049721 TAT
1 TAT
14049724 GAGTTTAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.14, G:0.11, T:0.46
Consensus pattern (16 bp):
TATCCTTAACAATTGG
Found at i:14051233 original size:17 final size:17
Alignment explanation
Indices: 14051208--14051240 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
14051198 ATCTCTTTAT
14051208 TTTGATTATAGTTCATA
1 TTTGATTATAGTTCATA
*
14051225 TTTGCTTATAGTTCAT
1 TTTGATTATAGTTCAT
14051241 CAATTCATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.09, G:0.12, T:0.55
Consensus pattern (17 bp):
TTTGATTATAGTTCATA
Found at i:14055837 original size:24 final size:24
Alignment explanation
Indices: 14055805--14055857 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
14055795 CTTTCTTTAT
14055805 TTATGCAACTCAATTTATGGTTAA
1 TTATGCAACTCAATTTATGGTTAA
14055829 TTATGCAACTCAATTTATGGTTAA
1 TTATGCAACTCAATTTATGGTTAA
14055853 TTATG
1 TTATG
14055858 TAATATTTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.32, C:0.11, G:0.13, T:0.43
Consensus pattern (24 bp):
TTATGCAACTCAATTTATGGTTAA
Found at i:14057517 original size:12 final size:12
Alignment explanation
Indices: 14057485--14057525 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
14057475 TTAATATATT
14057485 ATATTATTTTCAA
1 ATATTATTTT-AA
14057498 A-A-TATTTTAA
1 ATATTATTTTAA
14057508 ATATTATTTTAA
1 ATATTATTTTAA
14057520 ATATTA
1 ATATTA
14057526 AATATTAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
10 3 0.12
11 7 0.27
12 15 0.58
13 1 0.04
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (12 bp):
ATATTATTTTAA
Found at i:14057528 original size:19 final size:21
Alignment explanation
Indices: 14057485--14057532 Score: 64
Period size: 19 Copynumber: 2.3 Consensus size: 21
14057475 TTAATATATT
14057485 ATATTATTTTCAAAATATTTTAA
1 ATATTATTTT-AAAATA-TTTAA
14057508 ATATTATTTT-AAATA-TTAA
1 ATATTATTTTAAAATATTTAA
14057527 ATATTA
1 ATATTA
14057533 AATTTAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 10 0.40
21 5 0.20
23 10 0.40
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (21 bp):
ATATTATTTTAAAATATTTAA
Found at i:14057618 original size:57 final size:59
Alignment explanation
Indices: 14057519--14057644 Score: 145
Period size: 57 Copynumber: 2.1 Consensus size: 59
14057509 TATTATTTTA
14057519 AATATTAAATATTAAATTTAATAAGATTTTAATATAGTATATTAATTT-A-ATATTAAA-T
1 AATATTAAATATTAAATTTAATAAGATTTTAATATAG-ATATT-ATTTAATATATTAAAGT
* * *
14057577 AATATTAAATA-TGAATTTAATAATATTTTAGCATTTA-ATATTATTTAATTATATTAAAGT
1 AATATTAAATATTAAATTTAATAAGATTTTA--ATATAGATATTATTTAA-TATATTAAAGT
14057637 AATATTAA
1 AATATTAA
14057645 TTAATTATCA
Statistics
Matches: 59, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
56 4 0.07
57 23 0.39
58 11 0.19
59 12 0.20
60 9 0.15
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.47
Consensus pattern (59 bp):
AATATTAAATATTAAATTTAATAAGATTTTAATATAGATATTATTTAATATATTAAAGT
Found at i:14057649 original size:10 final size:10
Alignment explanation
Indices: 14057557--14057734 Score: 61
Period size: 10 Copynumber: 17.1 Consensus size: 10
14057547 TTAATATAGT
14057557 ATATTAATTTA
1 ATATTAA-TTA
*
14057568 ATATTAAATA
1 ATATTAATTA
14057578 ATATTAAATATGA
1 ATATT-AAT-T-A
14057591 AT-TTAA-TA
1 ATATTAATTA
14057599 ATATT--TTA
1 ATATTAATTA
14057607 GCAT-TTAA-TA
1 --ATATTAATTA
*
14057617 TTATTTAATT-
1 ATA-TTAATTA
*
14057627 ATATTAAAGTA
1 ATATT-AATTA
14057638 ATATTAATTA
1 ATATTAATTA
*
14057648 ATTATCAAATTAA
1 A-TAT-TAATT-A
14057661 ATATTATAATTA
1 ATA-T-TAATTA
* *
14057673 ATAGT-ATTT
1 ATATTAATTA
14057682 A-ATTAATTA
1 ATATTAATTA
* *
14057691 AAATAAATTA
1 ATATTAATTA
14057701 ATATTAATTA
1 ATATTAATTA
14057711 ATCATAATAATT-
1 AT-AT--TAATTA
14057723 ATAATTAATTA
1 AT-ATTAATTA
14057734 A
1 A
14057735 ATATAAAAGG
Statistics
Matches: 126, Mismatches: 17, Indels: 48
0.66 0.09 0.25
Matches are distributed among these distances:
8 8 0.06
9 15 0.12
10 48 0.38
11 23 0.18
12 17 0.13
13 15 0.12
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (10 bp):
ATATTAATTA
Found at i:14059861 original size:12 final size:12
Alignment explanation
Indices: 14059846--14059888 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
14059836 TCTCTCTCAA
14059846 ACACACACACGC
1 ACACACACACGC
*
14059858 ACACGCACACGC
1 ACACACACACGC
* *
14059870 ACGCACTCACGC
1 ACACACACACGC
14059882 ACACACA
1 ACACACA
14059889 AACTCACTGA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.37, C:0.49, G:0.12, T:0.02
Consensus pattern (12 bp):
ACACACACACGC
Found at i:14067213 original size:13 final size:13
Alignment explanation
Indices: 14067195--14067226 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
14067185 GCTCAATTCT
14067195 TTTCTTTTCTTTC
1 TTTCTTTTCTTTC
*
14067208 TTTCTTTTTTTTC
1 TTTCTTTTCTTTC
14067221 TTTCTT
1 TTTCTT
14067227 GAACCATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTCTTTTCTTTC
Found at i:14067221 original size:17 final size:18
Alignment explanation
Indices: 14067191--14067226 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
14067181 GTTAGCTCAA
14067191 TTCTTTTCTTTTCTTTCT
1 TTCTTTTCTTTTCTTTCT
14067209 TTCTTTT-TTTTCTTTCT
1 TTCTTTTCTTTTCTTTCT
14067226 T
1 T
14067227 GAACCATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (18 bp):
TTCTTTTCTTTTCTTTCT
Found at i:14072578 original size:19 final size:19
Alignment explanation
Indices: 14072556--14072601 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
14072546 TTCTACTGCA
14072556 AAAATATTTTAAAATTTTT
1 AAAATATTTTAAAATTTTT
* ** *
14072575 AAAAAATTTTCTAGTTTTT
1 AAAATATTTTAAAATTTTT
14072594 AAAATATT
1 AAAATATT
14072602 AAATTACTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (19 bp):
AAAATATTTTAAAATTTTT
Found at i:14072624 original size:21 final size:19
Alignment explanation
Indices: 14072589--14072631 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 19
14072579 AATTTTCTAG
14072589 TTTTTAAAATATTAAATTACT
1 TTTTTAAAATATT-AATT-CT
* *
14072610 TTTTTAATATTTTAATTCT
1 TTTTTAAAATATTAATTCT
14072629 TTT
1 TTT
14072632 AATTTTATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 5 0.25
20 4 0.20
21 11 0.55
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.63
Consensus pattern (19 bp):
TTTTTAAAATATTAATTCT
Found at i:14073320 original size:29 final size:28
Alignment explanation
Indices: 14073258--14073321 Score: 67
Period size: 29 Copynumber: 2.2 Consensus size: 28
14073248 TTTAATATTT
*
14073258 TTAAAAATCTAAAAATTTTATTAAAAAT
1 TTAAAAATCTAAAAATTTTATTAAAAAA
* *
14073286 TCTAAATAT-TAAAATTTTATATTCAAAAAA
1 T-TAAAAATCTAAAAATTT-TATT-AAAAAA
14073316 TTAAAA
1 TTAAAA
14073322 TTCAGATTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
28 9 0.31
29 14 0.48
30 6 0.21
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (28 bp):
TTAAAAATCTAAAAATTTTATTAAAAAA
Found at i:14074567 original size:26 final size:26
Alignment explanation
Indices: 14074528--14074580 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14074518 TGAAGACCCC
14074528 TAATATGTTAAAAACATGGCAATCAT
1 TAATATGTTAAAAACATGGCAATCAT
* *
14074554 TAATATGTTTAAAACGTGGCAATCAT
1 TAATATGTTAAAAACATGGCAATCAT
14074580 T
1 T
14074581 TTTTCACTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (26 bp):
TAATATGTTAAAAACATGGCAATCAT
Found at i:14081737 original size:20 final size:21
Alignment explanation
Indices: 14081710--14081755 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
14081700 GTAAAATGTG
*
14081710 TAAAAAAATGTTATAAT-ATTT
1 TAAAAAAA-ATTATAATAATTT
14081731 TAAAAAAAATTATAATAATTT
1 TAAAAAAAATTATAATAATTT
14081752 TAAA
1 TAAA
14081756 CGTATTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (21 bp):
TAAAAAAAATTATAATAATTT
Found at i:14081838 original size:17 final size:17
Alignment explanation
Indices: 14081818--14081881 Score: 53
Period size: 15 Copynumber: 3.8 Consensus size: 17
14081808 AAGTTGACAA
14081818 TATAAAAAAATTATTAT
1 TATAAAAAAATTATTAT
*
14081835 TATAAATAAAAAATTA-AAT
1 TAT--A-AAAAAATTATTAT
* *
14081854 TA-AAAAAAGTT-TTAA
1 TATAAAAAAATTATTAT
14081869 TATAAAAAAATTA
1 TATAAAAAAATTA
14081882 GAATAATTGT
Statistics
Matches: 36, Mismatches: 5, Indels: 12
0.68 0.09 0.23
Matches are distributed among these distances:
15 10 0.28
16 9 0.25
17 3 0.08
19 5 0.14
20 9 0.25
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (17 bp):
TATAAAAAAATTATTAT
Found at i:14082455 original size:219 final size:218
Alignment explanation
Indices: 14082018--14082492 Score: 510
Period size: 219 Copynumber: 2.2 Consensus size: 218
14082008 TAATAAAGAG
* * * ** *
14082018 TTGTAATAAATTTAAACATAATAAAAAGTAAAAACAAGTGTAAAAAAAATTATTATAACATACAT
1 TTGTAAT-AATTTAAACGTAATGAAAAGTAACAACAACCGTAAAAAAAATTATTATAACATAAAT
** * * **
14082083 AATATTTTTGGCAATGTAAAAGAATTATTATTACAAATAATTAATAATTCTAAACTAAAAAAATA
65 AATATAGTTGACAATATAAAAGAATTATTATTACAAATAAAAAATAATTCTAAACTAAAAAAATA
** * * * * *
14082148 AGTATTAGCATAAAAAATGTGAGAGCAATCGTAAAATTTATATTATTTAGAGTAAAATTATTAGA
130 AAAATAAACATAAAAAATGTAAGAACAATCATAAAATTTATATTATTTAGAGTAAAATTATTAGA
* *
14082213 AGTATCATAACACCTTTAAAAAAA
195 AATATCATAACACCTTGAAAAAAA
* * *
14082237 TTGTAATACTTCTAAACGTAATGAAAAGTAACAACAACCGTAAAAAATATTATTATAATATAAAT
1 TTGTAATAATT-TAAACGTAATGAAAAGTAACAACAACCGTAAAAAAAATTATTATAACATAAAT
* * **
14082302 AAT-TAAGTTGACAATATAAAAGAATTATTATTACAAATAAAAAATAATTTTCAA-TAAAAAGTT
65 AATAT-AGTTGACAATATAAAAGAATTATTATTACAAATAAAAAATAATTCTAAACTAAAAAAAT
* * * *
14082365 AAAAATAAACGTAAAATA-GTAAGAATAATCATAAAATTTGTATTATTTA-ACGTAAAA-TAGTT
129 AAAAATAAACATAAAAAATGTAAGAACAATCATAAAATTTATATTATTTAGA-GTAAAATTA-TT
* * *
14082427 AGAAATATCGTTACATCTTAAGAAAAAAA
192 AGAAATATCATAACACCTT--GAAAAAAA
* *
14082456 TTGTAATAATTTCAAATGTACTGAAAAGTAACAACAA
1 TTGTAATAATTT-AAACGTAATGAAAAGTAACAACAA
14082493 ATATAAAAAT
Statistics
Matches: 211, Mismatches: 38, Indels: 14
0.80 0.14 0.05
Matches are distributed among these distances:
216 3 0.01
217 49 0.23
218 24 0.11
219 135 0.64
ACGTcount: A:0.53, C:0.07, G:0.09, T:0.31
Consensus pattern (218 bp):
TTGTAATAATTTAAACGTAATGAAAAGTAACAACAACCGTAAAAAAAATTATTATAACATAAATA
ATATAGTTGACAATATAAAAGAATTATTATTACAAATAAAAAATAATTCTAAACTAAAAAAATAA
AAATAAACATAAAAAATGTAAGAACAATCATAAAATTTATATTATTTAGAGTAAAATTATTAGAA
ATATCATAACACCTTGAAAAAAA
Found at i:14082561 original size:219 final size:215
Alignment explanation
Indices: 14082174--14082579 Score: 477
Period size: 219 Copynumber: 1.9 Consensus size: 215
14082164 ATGTGAGAGC
* * *
14082174 AATCGTAAAATTTATATTATTTAGAGTAAAATTATTAGAAGTATCATAACACCTTTAAAAAAATT
1 AATCATAAAATTTATATTATTTAGAGTAAAATTATTAGAAATATCATAACACCTTGAAAAAAATT
* *
14082239 GTAATACTTCTAAACGTAATGAAAAGTAACAACAACCGTAAAAAATATTATTATAATATAAATAA
66 GTAATACTTCTAAACGTAATGAAAAGTAACAACAAACATAAAAAATATTATTAT-ATATAAATAA
* *
14082304 TTAAGTTGACAATATAAAAGAATTATTATTACAAAT-AAAAAATAATTTTCAATAAAAAGTTAAA
130 TTAAGTTGACAATATAAAAAAATTAGTATTACAAATAAAAAAATAA--TTCAATAAAAAGTTAAA
14082368 AATAAACGTAAAATAGTAAGAAT
193 AATAAACGTAAAATAGTAAGAAT
* * * *
14082391 AATCATAAAATTTGTATTATTTA-ACGTAAAA-TAGTTAGAAATATCGTTACATCTTAAGAAAAA
1 AATCATAAAATTTATATTATTTAGA-GTAAAATTA-TTAGAAATATCATAACACCTT--GAAAAA
* * * *
14082454 AATTGTAATAATT-TCAAATGTACTGAAAAGTAACAACAAATATAAAAATATATATATTAT-TGA
62 AATTGTAATACTTCT-AAACGTAATGAAAAGTAACAACAAACATAAAAA-ATAT-TATTATAT-A
* * *
14082517 -AACATAA-TAAGTT-AGTAATGTAAAAAAATTAGTATTATAAATAAAAAAATAATTCAATAAAA
123 TAA-ATAATTAAGTTGA-CAATATAAAAAAATTAGTATTACAAATAAAAAAATAATTCAATAAAA
14082579 A
186 A
14082580 ATGTTAATGT
Statistics
Matches: 160, Mismatches: 18, Indels: 21
0.80 0.09 0.11
Matches are distributed among these distances:
216 3 0.02
217 44 0.28
218 13 0.08
219 76 0.47
220 18 0.11
221 6 0.04
ACGTcount: A:0.54, C:0.07, G:0.08, T:0.32
Consensus pattern (215 bp):
AATCATAAAATTTATATTATTTAGAGTAAAATTATTAGAAATATCATAACACCTTGAAAAAAATT
GTAATACTTCTAAACGTAATGAAAAGTAACAACAAACATAAAAAATATTATTATATATAAATAAT
TAAGTTGACAATATAAAAAAATTAGTATTACAAATAAAAAAATAATTCAATAAAAAGTTAAAAAT
AAACGTAAAATAGTAAGAAT
Found at i:14082975 original size:932 final size:929
Alignment explanation
Indices: 14082037--14083992 Score: 2249
Period size: 932 Copynumber: 2.1 Consensus size: 929
14082027 ATTTAAACAT
* * * **
14082037 AATAAAAAGTAAAAACAAGTGTAAAA-AA-AATTATTATAACATACATAATATTTTTGGCAATGT
1 AATAAAAAATAAAAACAAGTGTAAAATAATAATTATTATAACATAAATAATATTTTTGACAACAT
* *
14082100 AAAAGAATTATTATTACAAATAATTAATAATTCTAAACTAAAAAAATAAGTATTAGCATAAAAAA
66 AAAAGAATTATTATTACAAATAAATAATAATTCTAAAC--AAAAAA-AAGTATTAACATAAAAAA
* * *
14082165 TGTGAGAGCAATCGTAAAATTTATATTATTTAGA-GTAAAATTA-TTAGAAGTATCATAACACCT
128 TGTGAGAGCAATCGTAAAATTAATATCATTT-GACGTAAAA-TAGTTAAAAGTATCATAACA-CT
* * *
14082228 TT-A-AAAAAATTGTAATACTTCTAAACGTAATGAAAA-GTAACAACAACCGTA-AAAAATATTA
190 TTAAGAAAAAATTATAATAATTCTAAACGTAAT-AAAATGTAACAACAACCATACAAAAATATTA
* * *
14082289 TTATAATATAAATAATTAAGTTGACAATATAAAAGAATTATTATTACAAATAAAAAATAATTTTC
254 TTATAATATAAATAATTAAATTGACAATATAAAA-AAATATTATTACAAATAAAAAATAATTTTA
* * * * * *
14082354 AATAAAAAGTTAAAAATAAACGTAAAATAGTAAGAATAATCATAAAATTTGTATTATT-TAACGT
318 AACAAAAA--TAAAAATAAACATAAAAGAGTAAGAATAATCAGAAAATTGGTATTATTAT-ACAT
* * * *
14082418 AAAATAGTTAGAAA-TATCGTTACATCTTAAGAAAAAAATTGTAATAATTTCAAATGTACTGAAA
380 AAAATAGTTA-AAAGTATCGTTACACCATAACAAAAAAATTGTAATAATTTCAAATGTAATGAAA
* * * **
14082482 AGTAACAACAAATATAAAAATATATATATTATTGAAACATAATAAGTTAGTAATGTAAAAAAATT
444 AATAACAACAAACAT--AAA-A-AGATATTATTGAAACATAATAAGTTAGTAACATAAAAAAATT
* * * * *
14082547 AGTATTATAAATAAAAA-AA-TAATTCAATAAA-AAATGTTAATGTAAAAAGATGAG-ATAATCG
505 AGTATTATAAATAAAAATAATTAAATAAAAAAATAAATGTTAAAGTAAAAAGATGAGAATAATCA
* * **
14082608 T-AAATTTGGTATCATTTGATATAAAATATA-TTAGAAGTGTCATAATACTTTAAGAAAATTTTG
570 TAAAATTT-GTATAATTTGACATAAAATATATTTA-AAGTGTCATAATA-TTTAAGAAAAAGTTG
* * * * *
14082671 TGATAATTTTAAATATAATAAAAAATAAAAACGAGTGTAAAGATTTTATTGTAACGTAAAT-A-T
632 TGATAATTCTAAATATAATAAAAAATAAAAACAAGTGT-AACATCTTATTATAACGTAAATAATT
* *
14082734 AAGTTGACAACATAAAAAAATTATTATTATAAATACAAAATAA-TTCTAA-ACAAAAAATATAA-
696 AAATTGACAACAT-AAAAAATTATTATTATAAATAAAAAATAATTTC-AAGACAAAAAATA-AAT
* * * * *
14082796 ATTAACGTAAAAAGATAAGAATAAT-TGAAAATTTGAAATTATTTTATGTAAAATATGTTACAAT
758 ATTAACATAAAAAAATAAGAATAATAT-AAAATTTG-AATAATTTAACGTAAAATATGTTACAAT
14082860 GTCATAACGTAAAAAAGATAAGAATAATTGTAAAACTAGTATTATTTGGTATAAATTGGGTTATA
821 GTCATAACGTAAAAAAGATAAGAATAATTGTAAAACTAGTATTATTTGGTATAAATTGGGTTATA
14082925 AGTGTCATAACACCTTAACAAAAAATTGTGATAATTTTAAATGG
886 AGTGTCATAACACCTTAACAAAAAATTGTGATAATTTTAAATGG
* * * *
14082969 AATAAAAAATAGAAATAAGTGTAAAATAATTATTATTGTAACATAAATAATATTTTTGACAACAT
1 AATAAAAAATAAAAACAAGTGTAAAATAATAATTATTATAACATAAATAATATTTTTGACAACAT
* * * *
14083034 AAAAGAATTATTATTACAAATAAATCATAATTTTAAACAAAAAAAAGTGTTAATATAAAAAATGT
66 AAAAGAATTATTATTACAAATAAATAATAATTCTAAACAAAAAAAAGTATTAACATAAAAAATGT
* * * *
14083099 GAGAGTAATTGTTAAATTAATATCATTTGACGTAAAATAGTTAAAAGTATCGTAACACTTTAAGA
131 GAGAGCAATCGTAAAATTAATATCATTTGACGTAAAATAGTTAAAAGTATCATAACACTTTAAGA
* * * *
14083164 AAAAATTATGATAATTCTAAATGTAATAAAATGTAACAACAAGCATACAAAGATATTATTATAAT
196 AAAAATTATAATAATTCTAAACGTAATAAAATGTAACAACAACCATACAAAAATATTATTATAAT
* * * *
14083229 GTAAATAATTAAATTGATAATGTAAAAAAATATTATTATAAATAAAAAATAATTTTAAACAAAAA
261 ATAAATAATTAAATTGACAATATAAAAAAATATTATTACAAATAAAAAATAATTTTAAACAAAAA
* * * *
14083294 TAAGAGTTAACATAAAAGGGTAAGAATAATCAGAAAATTGGTATTATTATACATAAAATAGTTAA
326 TAAAAATAAACATAAAAGAGTAAGAATAATCAGAAAATTGGTATTATTATACATAAAATAGTTAA
* * *
14083359 AAGTATTGTTACACCATAACAAAAAATTTGTAATAATTTTAAATGTAATGAAAAATAACAACAAA
391 AAGTATCGTTACACCATAACAAAAAAATTGTAATAATTTCAAATGTAATGAAAAATAACAACAAA
* * *
14083424 CGTAAAAAGATATTATTGAAACTTAATAAGTTTGTAACATAAAAAAATTAGTATTATAAATAAAA
456 CATAAAAAGATATTATTGAAACATAATAAGTTAGTAACATAAAAAAATTAGTATTATAAATAAAA
*
14083489 ATAATTCTAAATAAAAAAATAAATGTTAAAGTAAAAATATGAGAATAATCATAAAATTTGTATAA
521 ATAA-T-TAAATAAAAAAATAAATGTTAAAGTAAAAAGATGAGAATAATCATAAAATTTGTATAA
* * *
14083554 TTTGACGTAATATATATTTAAAGTGTCGTAATATTTAAGAAAAAGTTGTGATAATTCTAAATATA
584 TTTGACATAAAATATATTTAAAGTGTCATAATATTTAAGAAAAAGTTGTGATAATTCTAAATATA
** ** * *
14083619 ATAAAATGTATGAACAAGTGTAACATCTTATTATAATGTAAATAATTAAATTGACATCATAAAAA
649 ATAAAAAATAAAAACAAGTGTAACATCTTATTATAACGTAAATAATTAAATTGACAACATAAAAA
* * *
14083684 ATTATTATTATAAATAAAAAATAATTTCAAGTCTAAAAATAAATGTTAACATAAAAAAATAAGAA
714 ATTATTATTATAAATAAAAAATAATTTCAAGACAAAAAATAAATATTAACATAAAAAAATAAGAA
* * * * * * *
14083749 TAATCATAAAATTTGTATAATTTAACGTAAAATATGTTAAAAGTATTATAACG-AACAAATATGA
779 TAAT-ATAAAATTTGAATAATTTAACGTAAAATATGTTACAA-TGTCATAACGTAAAAAAGATAA
* * * * * * * ** * * * ** ** *
14083813 GAATAGTCGTAAAATTAATATCATTTGGTGTAAAATAAGTTAAAACTATTGTTGCACCCTAACAA
842 GAATAATTGTAAAACTAGTATTATTTGGTATAAATTGGGTTATAAGTGTCATAACACCTTAACAA
* * * *
14083878 AAAGTTGCGATACTTTTAAATGT
907 AAAATTGTGATAATTTTAAATGG
* * * * **
14083901 AATAAAATATAAGAACAA-AGTAAAA-AAT-ATTATT-TCAACGTAAATAAGTA-AGTTGACAAC
1 AATAAAAAATAAAAACAAGTGTAAAATAATAATTATTAT-AACATAAATAA-TATTTTTGACAAC
* * *
14083961 ATAAAAAAATTATTATTATAAATAAAAAATAA
64 ATAAAAGAATTATTATTACAAATAAATAATAA
14083993 GTGTTTACGT
Statistics
Matches: 861, Mismatches: 135, Indels: 59
0.82 0.13 0.06
Matches are distributed among these distances:
926 54 0.06
927 3 0.00
928 4 0.00
929 55 0.06
930 148 0.17
931 173 0.20
932 293 0.34
933 66 0.08
934 65 0.08
ACGTcount: A:0.52, C:0.06, G:0.10, T:0.32
Consensus pattern (929 bp):
AATAAAAAATAAAAACAAGTGTAAAATAATAATTATTATAACATAAATAATATTTTTGACAACAT
AAAAGAATTATTATTACAAATAAATAATAATTCTAAACAAAAAAAAGTATTAACATAAAAAATGT
GAGAGCAATCGTAAAATTAATATCATTTGACGTAAAATAGTTAAAAGTATCATAACACTTTAAGA
AAAAATTATAATAATTCTAAACGTAATAAAATGTAACAACAACCATACAAAAATATTATTATAAT
ATAAATAATTAAATTGACAATATAAAAAAATATTATTACAAATAAAAAATAATTTTAAACAAAAA
TAAAAATAAACATAAAAGAGTAAGAATAATCAGAAAATTGGTATTATTATACATAAAATAGTTAA
AAGTATCGTTACACCATAACAAAAAAATTGTAATAATTTCAAATGTAATGAAAAATAACAACAAA
CATAAAAAGATATTATTGAAACATAATAAGTTAGTAACATAAAAAAATTAGTATTATAAATAAAA
ATAATTAAATAAAAAAATAAATGTTAAAGTAAAAAGATGAGAATAATCATAAAATTTGTATAATT
TGACATAAAATATATTTAAAGTGTCATAATATTTAAGAAAAAGTTGTGATAATTCTAAATATAAT
AAAAAATAAAAACAAGTGTAACATCTTATTATAACGTAAATAATTAAATTGACAACATAAAAAAT
TATTATTATAAATAAAAAATAATTTCAAGACAAAAAATAAATATTAACATAAAAAAATAAGAATA
ATATAAAATTTGAATAATTTAACGTAAAATATGTTACAATGTCATAACGTAAAAAAGATAAGAAT
AATTGTAAAACTAGTATTATTTGGTATAAATTGGGTTATAAGTGTCATAACACCTTAACAAAAAA
TTGTGATAATTTTAAATGG
Found at i:14083017 original size:21 final size:23
Alignment explanation
Indices: 14082990--14083057 Score: 74
Period size: 21 Copynumber: 3.2 Consensus size: 23
14082980 GAAATAAGTG
*
14082990 TAAAATAATTATTATTG-TAACA
1 TAAAATAATTATTATTGACAACA
*
14083012 T-AAATAA-TATTTTTGACAACA
1 TAAAATAATTATTATTGACAACA
*
14083033 TAAAAGAATTATTATT-ACAA-A
1 TAAAATAATTATTATTGACAACA
14083054 TAAA
1 TAAA
14083058 TCATAATTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
20 7 0.18
21 16 0.41
22 10 0.26
23 6 0.15
ACGTcount: A:0.53, C:0.06, G:0.04, T:0.37
Consensus pattern (23 bp):
TAAAATAATTATTATTGACAACA
Found at i:14083269 original size:21 final size:21
Alignment explanation
Indices: 14083216--14083277 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
14083206 GCATACAAAG
*
14083216 ATATTATTATAATGTAAATAA
1 ATATTATTATAATGTAAAAAA
* *
14083237 TTA-AATTGATAATGTAAAAAA
1 ATATTATT-ATAATGTAAAAAA
*
14083258 ATATTATTATAA-ATAAAAAA
1 ATATTATTATAATGTAAAAAA
14083278 TAATTTTAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
20 10 0.30
21 20 0.61
22 3 0.09
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (21 bp):
ATATTATTATAATGTAAAAAA
Found at i:14083284 original size:217 final size:214
Alignment explanation
Indices: 14083032--14083794 Score: 687
Period size: 215 Copynumber: 3.5 Consensus size: 214
14083022 TTTTGACAAC
* * ** *
14083032 ATAAAAGAATTATTATTACAAATAAATCATAATTTTAAACAAAAAAAAGTGTTAATATAAAAAAT
1 ATAAAA-AAATATTATTATAAATAAAAAATAATTTTAAACAAAAAAAAGTGTTAACAT-AAAAAT
* * * ** * ** *
14083097 GTGAGAGTAATTGTTAAATTAATATCATTTGACGTAAAATAGTTAAAAGTATCGTAACACTTTAA
64 ATAAGAATAATCATAAAATTTGTATAATTTGACGTAAAATAGTTAAAAGTATCGTAACACTTTAA
*
14083162 GAAAAAATTATGATAATTCTAAATGTAATAAAATGTAACAACAAGCATACAAAGATATTATTATA
129 GAAAAAATT-TGATAATTCTAAATGTAATAAAATGTAACAACAAGC-TAAAAAGATATTATTATA
14083227 ATGTAAATAATTAAATTGATAAT
192 ATGTAAATAATTAAATTGATAAT
* * * ***
14083250 GTAAAAAAATATTATTATAAATAAAAAATAATTTTAAACAAAAATAAGAGTTAACATAAAAGGGT
1 ATAAAAAAATATTATTATAAATAAAAAATAATTTTAAACAAAAAAAAGTGTTAACATAAAAATAT
* * * * * * ** *
14083315 AAGAATAATCAGAAAATTGGTATTATTAT-ACATAAAATAGTTAAAAGTATTGTTACACCATAAC
66 AAGAATAATCATAAAATTTGTATAATT-TGACGTAAAATAGTTAAAAGTATCGTAACACTTTAAG
* * *
14083379 AAAAAATTTGTAATAATTTTAAATGTAATGAAAA-ATAACAACAAACGTAAAAAGATATTATTGA
130 AAAAAATTTG--ATAATTCTAAATGTAAT-AAAATGTAACAACAAGC-TAAAAAGATATTATT-A
* *
14083443 -AACT-T-AATAAGT---TTG-TAAC
190 TAA-TGTAAATAATTAAATTGATAAT
* * * *
14083462 ATAAAAAAATTAGTATTATAAAT-AAAAATAATTCTAAATAAAAAAATAAATGTTAA-AGTAAAA
1 ATAAAAAAA-TATTATTATAAATAAAAAATAATTTTAAA-CAAAAAA-AAGTGTTAACA-TAAAA
* * * *
14083525 ATATGAGAATAATCATAAAATTTGTATAATTTGACGTAATATATA-TTTAAAGTGTCGTAATA-T
62 ATATAAGAATAATCATAAAATTTGTATAATTTGACGTAA-A-ATAGTTAAAAGTATCGTAACACT
* * ** ** * *
14083588 TTAAGAAAAAGTTGTGATAATTCTAAATATAATAAAATGTATGAACAAG-T-GTAACATCTTATT
125 TTAAGAAAAAATT-TGATAATTCTAAATGTAATAAAATGTAACAACAAGCTAAAAAGATATTATT
*
14083651 ATAATGTAAATAATTAAATTGA-CAT
189 ATAATGTAAATAATTAAATTGATAAT
* * *
14083676 CATAAAAAATTATTATTATAAATAAAAAATAATTTCAAGTCTAAAAATAAA-TGTTAACATAAAA
1 -ATAAAAAAATATTATTATAAATAAAAAATAATTTTAA-AC-AAAAA-AAAGTGTTAACATAAAA
* *
14083740 AAATAAGAATAATCATAAAATTTGTATAATTTAACGTAAAATATGTTAAAAGTAT
62 ATATAAGAATAATCATAAAATTTGTATAATTTGACGTAAAATA-GTTAAAAGTAT
14083795 TATAACGAAC
Statistics
Matches: 435, Mismatches: 80, Indels: 63
0.75 0.14 0.11
Matches are distributed among these distances:
209 2 0.00
210 12 0.03
211 7 0.02
212 29 0.07
213 47 0.11
214 68 0.16
215 92 0.21
216 78 0.18
217 89 0.20
218 11 0.03
ACGTcount: A:0.53, C:0.05, G:0.09, T:0.33
Consensus pattern (214 bp):
ATAAAAAAATATTATTATAAATAAAAAATAATTTTAAACAAAAAAAAGTGTTAACATAAAAATAT
AAGAATAATCATAAAATTTGTATAATTTGACGTAAAATAGTTAAAAGTATCGTAACACTTTAAGA
AAAAATTTGATAATTCTAAATGTAATAAAATGTAACAACAAGCTAAAAAGATATTATTATAATGT
AAATAATTAAATTGATAAT
Found at i:14084681 original size:31 final size:32
Alignment explanation
Indices: 14084646--14084707 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
14084636 AATAAAATTA
14084646 TGTATAC-TTTTTTAATGTTTACCTACTAACT
1 TGTATACTTTTTTTAATGTTTACCTACTAACT
*
14084677 TGTATACTTTTTTTAATGTTTACCTATTAAC
1 TGTATACTTTTTTTAATGTTTACCTACTAAC
14084708 CTATTAATCT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 7 0.24
32 22 0.76
ACGTcount: A:0.26, C:0.15, G:0.06, T:0.53
Consensus pattern (32 bp):
TGTATACTTTTTTTAATGTTTACCTACTAACT
Found at i:14086645 original size:31 final size:31
Alignment explanation
Indices: 14086610--14086668 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
14086600 ATATTAAAAG
* *
14086610 TTTTTTAATTTT-TTAATTTTAAATATTTGCA
1 TTTTTT-ATTTTATTAAATATAAATATTTGCA
14086641 TTTTTTATTTTATTAAATATAAATATTT
1 TTTTTTATTTTATTAAATATAAATATTT
14086669 TTAATATTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 5 0.20
31 20 0.80
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (31 bp):
TTTTTTATTTTATTAAATATAAATATTTGCA
Found at i:14088368 original size:4 final size:4
Alignment explanation
Indices: 14088349--14088398 Score: 57
Period size: 4 Copynumber: 12.5 Consensus size: 4
14088339 TTTTATACTT
* * *
14088349 TTTA TATTA CTTA TTTA TTTA TTTA TTTA TTAA GTTA TTTA TTT- TTTA
1 TTTA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
14088397 TT
1 TT
14088399 CATTCATGTT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
3 3 0.08
4 32 0.84
5 3 0.08
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (4 bp):
TTTA
Found at i:14089637 original size:3 final size:3
Alignment explanation
Indices: 14089624--14089677 Score: 90
Period size: 3 Copynumber: 18.0 Consensus size: 3
14089614 TTTTTAAAAA
* *
14089624 AAT AAT GAT AAT AAT AAT AAT GAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
14089672 AAT AAT
1 AAT AAT
14089678 GATGATGATG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:14093779 original size:3 final size:3
Alignment explanation
Indices: 14093771--14093849 Score: 158
Period size: 3 Copynumber: 26.3 Consensus size: 3
14093761 GAAAGAAAAG
14093771 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
14093819 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
14093850 CGGAACTAAA
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 76 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:14100804 original size:58 final size:58
Alignment explanation
Indices: 14100506--14100803 Score: 406
Period size: 58 Copynumber: 5.1 Consensus size: 58
14100496 TGTTTTTTTA
* *
14100506 TTTTTAGAAATTTTTATTTTCAAAGAAAATTGATAC-TTCTAACTTTTCCTCAAAAAATAT
1 TTTTTAGAAA-TTTTATTTTCAAGGAAAATTGATACTTTC-AACTTTTCTTC-AAAAATAT
*
14100566 TTTTTAGAAATTTATATTTTCAACGAAAATTGATACTTTCAACTTTT-TCTCAAAAATAT
1 TTTTTAGAAATTT-TATTTTCAAGGAAAATTGATACTTTCAACTTTTCT-TCAAAAATAT
* * * *
14100625 TTTTTAGAAATTGTATTTTCAAGAAAAATTGATACTTTCAACATTTCATCAAAAATAT
1 TTTTTAGAAATTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCTTCAAAAATAT
* *
14100683 TTTTTAGAAATTTTATTTTCAAGGAAGATTGATACTTTCAACTTTTTCGT-AAAAATATT
1 TTTTTAGAAATTTTATTTTCAAGGAAAATTGATACTTTCAAC-TTTTCTTCAAAAATA-T
* *
14100742 TTTTTA-AAATTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCTTTAAAAATGT
1 TTTTTAGAAATTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCTTCAAAAATAT
14100799 TTTTT
1 TTTTT
14100804 TTTTTAAATT
Statistics
Matches: 216, Mismatches: 15, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
57 12 0.06
58 126 0.58
59 35 0.16
60 40 0.19
61 3 0.01
ACGTcount: A:0.37, C:0.10, G:0.07, T:0.47
Consensus pattern (58 bp):
TTTTTAGAAATTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCTTCAAAAATAT
Found at i:14101433 original size:12 final size:12
Alignment explanation
Indices: 14101416--14101458 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
14101406 TGGAATCTGG
14101416 AAATTTTCCAAA
1 AAATTTTCCAAA
14101428 AAA-TTTCCAAAA
1 AAATTTTCC-AAA
14101440 AAATTTT-CAAGA
1 AAATTTTCCAA-A
14101452 AAATTTT
1 AAATTTT
14101459 TTCCTCTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 7 0.25
12 18 0.64
13 3 0.11
ACGTcount: A:0.51, C:0.12, G:0.02, T:0.35
Consensus pattern (12 bp):
AAATTTTCCAAA
Found at i:14101762 original size:10 final size:9
Alignment explanation
Indices: 14101746--14101770 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
14101736 AAACTAAAAC
14101746 ATTTTTTTT
1 ATTTTTTTT
14101755 ATTTTTTTT
1 ATTTTTTTT
14101764 ATTTTTT
1 ATTTTTT
14101771 AATTGTCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (9 bp):
ATTTTTTTT
Found at i:14102150 original size:16 final size:16
Alignment explanation
Indices: 14102131--14102183 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
14102121 TTCAGTTTCA
14102131 CAAGAATTCAAACTTG
1 CAAGAATTCAAACTTG
* *
14102147 CAAGATTTC-AAGTATG
1 CAAGAATTCAAACT-TG
*
14102163 CAAGAATTCAGACTTG
1 CAAGAATTCAAACTTG
14102179 CAAGA
1 CAAGA
14102184 TTTGCATTTG
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
15 3 0.10
16 25 0.83
17 2 0.07
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.25
Consensus pattern (16 bp):
CAAGAATTCAAACTTG
Found at i:14102543 original size:20 final size:22
Alignment explanation
Indices: 14102496--14102546 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 22
14102486 GTTTCACATC
14102496 TCAAAGATT-TTCATTTGAAAT
1 TCAAAGATTCTTCATTTGAAAT
14102517 TCAAAGATTCTT-ATTTG-AAT
1 TCAAAGATTCTTCATTTGAAAT
*
14102537 TCGAAGATTC
1 TCAAAGATTC
14102547 ACATTCAACA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 12 0.43
21 14 0.50
22 2 0.07
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (22 bp):
TCAAAGATTCTTCATTTGAAAT
Found at i:14102620 original size:59 final size:59
Alignment explanation
Indices: 14102517--14102669 Score: 200
Period size: 59 Copynumber: 2.6 Consensus size: 59
14102507 CATTTGAAAT
* * *
14102517 TCAAAGATTCTTATTTG-AATTCGAAGATTCACATTCAACAAATTTTGGGTTTCATACC
1 TCAAAGATTCTTATTTGAAATTCAAAGATTCACATTCAACAAATTTTAGGTTTCACACC
* ** * * *
14102575 TCAAAGATTCTCATTTGAAATTCAAAGATTCGTATTTAATAAATTTTAGGTTTCACACT
1 TCAAAGATTCTTATTTGAAATTCAAAGATTCACATTCAACAAATTTTAGGTTTCACACC
* *
14102634 TCAAAGATTTTTATTTGAAATTCAAAGATTCTCATT
1 TCAAAGATTCTTATTTGAAATTCAAAGATTCACATT
14102670 TGAATTTGAA
Statistics
Matches: 81, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
58 16 0.20
59 65 0.80
ACGTcount: A:0.35, C:0.14, G:0.10, T:0.41
Consensus pattern (59 bp):
TCAAAGATTCTTATTTGAAATTCAAAGATTCACATTCAACAAATTTTAGGTTTCACACC
Found at i:14102658 original size:21 final size:21
Alignment explanation
Indices: 14102633--14102714 Score: 103
Period size: 21 Copynumber: 4.0 Consensus size: 21
14102623 GGTTTCACAC
* *
14102633 TTCAAAGATTTTTATTTGAAA
1 TTCAAAGATTCTCATTTGAAA
14102654 TTCAAAGATTCTCATTTG-AA
1 TTCAAAGATTCTCATTTGAAA
** *
14102674 TTTGAAGATTCTAATTTGAAA
1 TTCAAAGATTCTCATTTGAAA
*
14102695 TTCAAAAATTCTCATTTGAA
1 TTCAAAGATTCTCATTTGAA
14102715 TTTGAAGATT
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
20 17 0.33
21 34 0.67
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.43
Consensus pattern (21 bp):
TTCAAAGATTCTCATTTGAAA
Found at i:14102681 original size:20 final size:20
Alignment explanation
Indices: 14102658--14102730 Score: 92
Period size: 20 Copynumber: 3.6 Consensus size: 20
14102648 TTGAAATTCA
14102658 AAGATTCTCATTTGAATTTG
1 AAGATTCTCATTTGAATTTG
* **
14102678 AAGATTCTAATTTGAAATTCA
1 AAGATTCTCATTTG-AATTTG
*
14102699 AAAATTCTCATTTGAATTTG
1 AAGATTCTCATTTGAATTTG
*
14102719 AAGATTCACATT
1 AAGATTCTCATT
14102731 CGACAAATTT
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
20 27 0.63
21 16 0.37
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.41
Consensus pattern (20 bp):
AAGATTCTCATTTGAATTTG
Found at i:14102682 original size:41 final size:41
Alignment explanation
Indices: 14102637--14102725 Score: 151
Period size: 41 Copynumber: 2.2 Consensus size: 41
14102627 TCACACTTCA
* * *
14102637 AAGATTTTTATTTGAAATTCAAAGATTCTCATTTGAATTTG
1 AAGATTCTAATTTGAAATTCAAAAATTCTCATTTGAATTTG
14102678 AAGATTCTAATTTGAAATTCAAAAATTCTCATTTGAATTTG
1 AAGATTCTAATTTGAAATTCAAAAATTCTCATTTGAATTTG
14102719 AAGATTC
1 AAGATTC
14102726 ACATTCGACA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.37, C:0.09, G:0.11, T:0.43
Consensus pattern (41 bp):
AAGATTCTAATTTGAAATTCAAAAATTCTCATTTGAATTTG
Found at i:14102761 original size:79 final size:79
Alignment explanation
Indices: 14102678--14102862 Score: 273
Period size: 79 Copynumber: 2.4 Consensus size: 79
14102668 TTTGAATTTG
14102678 AAGATTCTAATTTGAAATTCAAAAATTCTCATTTGAATTTGAAGATTCACATTCGACAAATTTTG
1 AAGATTCTAATTTGAAATTCAAAAATTCTCATTTGAATTTGAAGATTCACATTCGACAAATTTTG
** * *
14102743 GGTTTCATACTTTA
66 AATTTCACACCTTA
* * * *
14102757 AAGATTTTCATTTGAAATTCAAATATTCTCATTTGAATTTGAAGATTCACATTCGATAAATTTTG
1 AAGATTCTAATTTGAAATTCAAAAATTCTCATTTGAATTTGAAGATTCACATTCGACAAATTTTG
14102822 AATTTCACACCTTA
66 AATTTCACACCTTA
* *
14102836 AAGATTCTTATTTG-AATTCAAAGATTC
1 AAGATTCTAATTTGAAATTCAAAAATTC
14102863 ACAGTCGACA
Statistics
Matches: 95, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
78 12 0.13
79 83 0.87
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.41
Consensus pattern (79 bp):
AAGATTCTAATTTGAAATTCAAAAATTCTCATTTGAATTTGAAGATTCACATTCGACAAATTTTG
AATTTCACACCTTA
Found at i:14102905 original size:21 final size:21
Alignment explanation
Indices: 14102835--14102958 Score: 101
Period size: 21 Copynumber: 5.9 Consensus size: 21
14102825 TTCACACCTT
* *
14102835 AAAGATTCTTATTTG-AATTC
1 AAAGATTCTCATTTGAAACTC
* * * *
14102855 AAAGATTCACAGTCGACACACCTA
1 AAAGATTCTCATTTGA-A-A-CTC
* *
14102879 AAAGATTTTCATTTGAAATTC
1 AAAGATTCTCATTTGAAACTC
*
14102900 AAAGATTCTCATTTGACACTC
1 AAAGATTCTCATTTGAAACTC
*
14102921 AAAGATTCTCA-TT-AATAGTC
1 AAAGATTCTCATTTGAA-ACTC
14102941 AAAGATTCTCATTTGAAA
1 AAAGATTCTCATTTGAAA
14102959 ATGTCTTAAA
Statistics
Matches: 80, Mismatches: 17, Indels: 13
0.73 0.15 0.12
Matches are distributed among these distances:
19 1 0.01
20 27 0.34
21 33 0.41
22 4 0.05
23 2 0.03
24 13 0.16
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (21 bp):
AAAGATTCTCATTTGAAACTC
Found at i:14102944 original size:20 final size:20
Alignment explanation
Indices: 14102898--14102953 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
14102888 CATTTGAAAT
*
14102898 TCAAAGATTCTCATTTGACAC
1 TCAAAGATTCTCA-TTAACAC
* *
14102919 TCAAAGATTCTCATTAATAG
1 TCAAAGATTCTCATTAACAC
14102939 TCAAAGATTCTCATT
1 TCAAAGATTCTCATT
14102954 TGAAAATGTC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
20 19 0.59
21 13 0.41
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.36
Consensus pattern (20 bp):
TCAAAGATTCTCATTAACAC
Found at i:14102983 original size:14 final size:15
Alignment explanation
Indices: 14102964--14102997 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
14102954 TGAAAATGTC
14102964 TTAAAGA-ATCTTAT
1 TTAAAGATATCTTAT
*
14102978 TTAAAGATTTCTTAT
1 TTAAAGATATCTTAT
14102993 TTAAA
1 TTAAA
14102998 ACTCAAAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47
Consensus pattern (15 bp):
TTAAAGATATCTTAT
Found at i:14104165 original size:25 final size:25
Alignment explanation
Indices: 14104131--14104182 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
14104121 AAGTTGAGTC
* *
14104131 TTCTTTTTTTTTTCTTTTTCTT-ATT
1 TTCTTATTTTTTTATTTTT-TTAATT
14104156 TTCTTATTTTTTTATTTTTTTAATT
1 TTCTTATTTTTTTATTTTTTTAATT
14104181 TT
1 TT
14104183 TTTCCATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 2 0.08
25 22 0.92
ACGTcount: A:0.10, C:0.08, G:0.00, T:0.83
Consensus pattern (25 bp):
TTCTTATTTTTTTATTTTTTTAATT
Found at i:14104184 original size:9 final size:8
Alignment explanation
Indices: 14104137--14104185 Score: 62
Period size: 8 Copynumber: 5.9 Consensus size: 8
14104127 AGTCTTCTTT
*
14104137 TTTTTTTC
1 TTTTTTTA
14104145 TTTTTCTTA
1 TTTTT-TTA
*
14104154 TTTTCTTA
1 TTTTTTTA
14104162 TTTTTTTA
1 TTTTTTTA
14104170 TTTTTTTAA
1 TTTTTTT-A
14104179 TTTTTTT
1 TTTTTTT
14104186 CCATATATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
8 22 0.61
9 14 0.39
ACGTcount: A:0.10, C:0.06, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTTTTA
Found at i:14108053 original size:57 final size:58
Alignment explanation
Indices: 14107987--14108136 Score: 214
Period size: 58 Copynumber: 2.6 Consensus size: 58
14107977 AATTGATCTT
14107987 TACTTTCAACTTTTCCTAAAAAATATTTTTTTAAAATTTTA-TTTAAAAAAAAATTGA
1 TACTTTCAACTTTTCCTAAAAAATATTTTTTTAAAATTTTATTTTAAAAAAAAATTGA
* * * * *
14108044 TACTTTCAACATTTCTTCAAAAATA-TTTTTTAGAAATTTTATTTTCAAGAAAAATTGA
1 TACTTTCAACTTTTCCTAAAAAATATTTTTTTA-AAATTTTATTTTAAAAAAAAATTGA
*
14108102 TACTTTCAACTTTTCCTTAAAAATATATTTTTTAA
1 TACTTTCAACTTTTCCTAAAAAATAT-TTTTTTAA
14108137 TTTTTTTATA
Statistics
Matches: 81, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
56 7 0.09
57 30 0.37
58 36 0.44
59 1 0.01
60 7 0.09
ACGTcount: A:0.40, C:0.11, G:0.03, T:0.47
Consensus pattern (58 bp):
TACTTTCAACTTTTCCTAAAAAATATTTTTTTAAAATTTTATTTTAAAAAAAAATTGA
Found at i:14108100 original size:58 final size:57
Alignment explanation
Indices: 14107948--14108136 Score: 227
Period size: 57 Copynumber: 3.2 Consensus size: 57
14107938 TGCTTTTTTT
* * *
14107948 TATTTTTAAAAATTTTTATTTTCAAGGAAAATTGATCTTTACTTTCAACTTTTCCTAAAAAA
1 TATTTTTTAAAA-TTTTATTTTCAAGAAAAATTGA----TACTTTCAACTTTTCTTAAAAAA
* * * *
14108010 TATTTTTTTAAAATTTTA-TTTAAAAAAAAATTGATACTTTCAACATTTCTTCAAAAA
1 TA-TTTTTTAAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCTTAAAAAA
14108067 TATTTTTTAGAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATA
1 TATTTTTTA-AAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTT-CTTAAAAA-A
14108127 TATTTTTTAA
1 TATTTTTTAA
14108137 TTTTTTTATA
Statistics
Matches: 111, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
56 7 0.06
57 30 0.27
58 27 0.24
59 8 0.07
60 10 0.09
61 13 0.12
62 7 0.06
63 9 0.08
ACGTcount: A:0.39, C:0.10, G:0.04, T:0.48
Consensus pattern (57 bp):
TATTTTTTAAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCTTAAAAAA
Found at i:14108713 original size:19 final size:20
Alignment explanation
Indices: 14108689--14108731 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
14108679 AAACTTAACG
*
14108689 AAAAATTTCACCGACA-CTA
1 AAAAATTTCACCGAAATCTA
*
14108708 AAAAATTTTACCGAAATCTA
1 AAAAATTTCACCGAAATCTA
14108728 AAAA
1 AAAA
14108732 TTTTTCAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.53, C:0.19, G:0.05, T:0.23
Consensus pattern (20 bp):
AAAAATTTCACCGAAATCTA
Found at i:14112680 original size:46 final size:46
Alignment explanation
Indices: 14112613--14112707 Score: 190
Period size: 46 Copynumber: 2.1 Consensus size: 46
14112603 ATGAGTTAAT
14112613 TATTTTCTTGCAAAGTACAAGCAGTTAAGACATATTAGTTTTTATA
1 TATTTTCTTGCAAAGTACAAGCAGTTAAGACATATTAGTTTTTATA
14112659 TATTTTCTTGCAAAGTACAAGCAGTTAAGACATATTAGTTTTTATA
1 TATTTTCTTGCAAAGTACAAGCAGTTAAGACATATTAGTTTTTATA
14112705 TAT
1 TAT
14112708 ATAAAAATTA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.42
Consensus pattern (46 bp):
TATTTTCTTGCAAAGTACAAGCAGTTAAGACATATTAGTTTTTATA
Found at i:14112732 original size:21 final size:21
Alignment explanation
Indices: 14112708--14112747 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14112698 TTTTATATAT
14112708 ATAAAAATTATTTGTTAAATC
1 ATAAAAATTATTTGTTAAATC
* *
14112729 ATAAATATTTTTTGTTAAA
1 ATAAAAATTATTTGTTAAA
14112748 AAATTTATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (21 bp):
ATAAAAATTATTTGTTAAATC
Found at i:14115595 original size:33 final size:33
Alignment explanation
Indices: 14115548--14115621 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 33
14115538 GTGTATTAAC
* *
14115548 AACAACCTTCACAAGAGGTGGCTCCTATAAAGT
1 AACAACCTTCACAAGAAGAGGCTCCTATAAAGT
* * * *
14115581 AACAATCTTTACAAGAAGAGGCTTCTATAGAGT
1 AACAACCTTCACAAGAAGAGGCTCCTATAAAGT
*
14115614 ATCAACCT
1 AACAACCT
14115622 CTATAAGATA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (33 bp):
AACAACCTTCACAAGAAGAGGCTCCTATAAAGT
Found at i:14123985 original size:86 final size:83
Alignment explanation
Indices: 14123832--14123993 Score: 209
Period size: 86 Copynumber: 1.9 Consensus size: 83
14123822 GCTTTTTTGG
*
14123832 GTAATTATGATTATAAGATATTATAATAATTTTAGCCAATTATAACAAAGGGATTTTCATAATTA
1 GTAATTATGATTATAAGATATTATAATAATTTTAGCAAATTATAACAAAGGGATTTTCATAATTA
14123897 TGATAAGAAGGCATTTTT
66 TGATAAGAAGGCATTTTT
* * * * * *
14123915 GTAATTATGATTA-GAGTATATTATAGTATTTTTTGGCAAATTATAATATGAAGGTATTTTCATA
1 GTAATTATGATTATAAG-ATATTATAATA-ATTTTAGCAAATTATAACA--AAGGGATTTTCATA
*
14123979 ATTATGATAGGAAGG
62 ATTATGATAAGAAGG
14123994 ATTGTCTTAA
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
82 2 0.03
83 23 0.34
84 15 0.22
86 27 0.40
ACGTcount: A:0.39, C:0.04, G:0.16, T:0.41
Consensus pattern (83 bp):
GTAATTATGATTATAAGATATTATAATAATTTTAGCAAATTATAACAAAGGGATTTTCATAATTA
TGATAAGAAGGCATTTTT
Found at i:14125808 original size:95 final size:95
Alignment explanation
Indices: 14125604--14125806 Score: 325
Period size: 95 Copynumber: 2.1 Consensus size: 95
14125594 AAGTATGAAA
* * *
14125604 GATTCAATTAAAACAAACATAGGAATCTATTTAAAAATGTATAAAATTAAACTTGCAACTAAACT
1 GATTAAATTAAAACAAACATAGAAATCTAATTAAAAATGTATAAAATTAAACTTGCAACTAAACT
* ** *
14125669 TAAATAACATGCAAATATACGTATAGGCAT
66 TAAACAACATAAAAATATACATATAGGCAT
14125699 GATTAAATTAAAACAAACATAGAAATCTAATTAAAAATGTATAAAATTAAACTTGCAACTAAACT
1 GATTAAATTAAAACAAACATAGAAATCTAATTAAAAATGTATAAAATTAAACTTGCAACTAAACT
*
14125764 TAAACAACATAAAAATATACATATTGGCAT
66 TAAACAACATAAAAATATACATATAGGCAT
14125794 GATTAAACTTAAA
1 GATTAAA-TTAAA
14125807 CATCATCGAA
Statistics
Matches: 99, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
95 94 0.95
96 5 0.05
ACGTcount: A:0.52, C:0.12, G:0.08, T:0.28
Consensus pattern (95 bp):
GATTAAATTAAAACAAACATAGAAATCTAATTAAAAATGTATAAAATTAAACTTGCAACTAAACT
TAAACAACATAAAAATATACATATAGGCAT
Found at i:14128125 original size:144 final size:145
Alignment explanation
Indices: 14127800--14128130 Score: 366
Period size: 145 Copynumber: 2.3 Consensus size: 145
14127790 TTAAAACATC
* * * ** * * * * *
14127800 AAAAATCATGAAATATTATAAAATTGAGATCAAG-AAATTTTTGTGAAAATTCGAGCT-TGATAA
1 AAAAATCATCAAATATTATAAAATTAAGAT-AAGAAAAGTTTCATTAAAATCCAAGCTCAG-GAA
* * *
14127863 GGCCAAATTACAAAAATACCCTTAAAAGGGTATTTTCATAATTTCACATCTTTTAGTGTACTGCT
64 GGCCAAATTACAAAAATACCCTTAAAAGGGTATTTTCATAATTTCACATCTTGTAGGGTACTACT
* *
14127928 ATGATTTTAAATGCACC
129 ATGATTTCAAATGCACA
* * **
14127945 AAAAATCATCAAATATTATGAAGTTAAGATCTGAAAAGTTTCATTAAAATCCAAGCTCAGGAAGG
1 AAAAATCATCAAATATTATAAAATTAAGATAAGAAAAGTTTCATTAAAATCCAAGCTCAGGAAGG
* ** *
14128010 CCAAATTATAAAAATACCCTTAAAA-GGTATTTTGGTAATTTCACATC-TGTCGCGGTACTACTA
66 CCAAATTACAAAAATACCCTTAAAAGGGTATTTTCATAATTTCACATCTTGTAG-GGTACTACTA
14128073 TGATTTCAAATGCATCA
130 TGATTTCAAATGCA-CA
* *
14128090 AAAAAT-ATCAAATATTGTAAAATTATGATAAGAAAAGTTTC
1 AAAAATCATCAAATATTATAAAATTAAGATAAGAAAAGTTTC
14128131 TAAAAAAAAA
Statistics
Matches: 153, Mismatches: 29, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
143 3 0.02
144 71 0.46
145 78 0.51
146 1 0.01
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.32
Consensus pattern (145 bp):
AAAAATCATCAAATATTATAAAATTAAGATAAGAAAAGTTTCATTAAAATCCAAGCTCAGGAAGG
CCAAATTACAAAAATACCCTTAAAAGGGTATTTTCATAATTTCACATCTTGTAGGGTACTACTAT
GATTTCAAATGCACA
Found at i:14128161 original size:144 final size:144
Alignment explanation
Indices: 14127861--14128196 Score: 369
Period size: 144 Copynumber: 2.3 Consensus size: 144
14127851 CGAGCTTGAT
** * * *
14127861 AAGGCCAAATTACAAAAATACCCTTAAAAGGGTATTTTCATAATTTCACATCTTTTAGTGTACTG
1 AAGGCCAAATTACAAAAATACCCTTAAAA-GGTATTTTGGTAATTTCACATCTTGTAGGGTACTA
* * * * ** **
14127926 CTATGATTTTAAATGCACCAAAAATCATCAAATATTATGAAGTTAAGATCTGAAAAGTTTCATTA
65 CTATGATTTCAAATGCACAAAAAATCATCAAATATTATAAAATTAAGATAAGAAAAGTTTCAAAA
*
14127991 AAATCCAAGCTCAGG
130 AAATCCAACCTCAGG
* *
14128006 AAGGCCAAATTATAAAAATACCCTTAAAAGGTATTTTGGTAATTTCACATC-TGTCGCGGTACTA
1 AAGGCCAAATTACAAAAATACCCTTAAAAGGTATTTTGGTAATTTCACATCTTGTAG-GGTACTA
* *
14128070 CTATGATTTCAAATGCATCAAAAAAT-ATCAAATATTGTAAAATTATGATAAGAAAAGTTTCTAA
65 CTATGATTTCAAATGCA-CAAAAAATCATCAAATATTATAAAATTAAGATAAGAAAAGTTTC---
*
14128134 AAAAAAAT-CAACCTTA-G
126 AAAAAAATCCAACCTCAGG
* * *
14128151 AAGGTC-AATTACAAAAATA-CCTCAAAAAGGCATTTTGGTAATTTCA
1 AAGGCCAAATTACAAAAATACCCT-TAAAAGGTATTTTGGTAATTTCA
14128197 TATTTTTCAA
Statistics
Matches: 162, Mismatches: 23, Indels: 13
0.82 0.12 0.07
Matches are distributed among these distances:
143 6 0.04
144 103 0.64
145 41 0.25
146 6 0.04
147 6 0.04
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31
Consensus pattern (144 bp):
AAGGCCAAATTACAAAAATACCCTTAAAAGGTATTTTGGTAATTTCACATCTTGTAGGGTACTAC
TATGATTTCAAATGCACAAAAAATCATCAAATATTATAAAATTAAGATAAGAAAAGTTTCAAAAA
AATCCAACCTCAGG
Found at i:14128487 original size:20 final size:20
Alignment explanation
Indices: 14128444--14128488 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
14128434 CAACTTGTGC
* *
14128444 AATTTTGACTTTATTTGACT
1 AATTTTAACTTTATTTGACA
14128464 AATTTTAACTTTA-TTGAACA
1 AATTTTAACTTTATTTG-ACA
14128484 AATTT
1 AATTT
14128489 GATCGTATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 3 0.14
20 19 0.86
ACGTcount: A:0.33, C:0.09, G:0.07, T:0.51
Consensus pattern (20 bp):
AATTTTAACTTTATTTGACA
Found at i:14129494 original size:32 final size:32
Alignment explanation
Indices: 14129453--14129515 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
14129443 AAATATAAAA
14129453 AATTCTTAAAAAATATATAAT-AATAATTTTAC
1 AATTCTT-AAAAATATATAATAAATAATTTTAC
* * *
14129485 AATTTTTAAAAATATTTATTAAATAATTTTA
1 AATTCTTAAAAATATATAATAAATAATTTTA
14129516 AAGACAAGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 11 0.41
32 16 0.59
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (32 bp):
AATTCTTAAAAATATATAATAAATAATTTTAC
Found at i:14130151 original size:26 final size:25
Alignment explanation
Indices: 14130121--14130177 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
14130111 AATTTTAGTC
* *
14130121 AATTATAATATGAGGAGTATTTTTAT
1 AATTATAATAAGAGG-GCATTTTTAT
**
14130147 AATTACGATAAGAGGGCATTTTTAT
1 AATTATAATAAGAGGGCATTTTTAT
14130172 AATTAT
1 AATTAT
14130178 GGTTAGAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.39, C:0.04, G:0.16, T:0.42
Consensus pattern (25 bp):
AATTATAATAAGAGGGCATTTTTAT
Found at i:14130634 original size:21 final size:21
Alignment explanation
Indices: 14130603--14130654 Score: 95
Period size: 21 Copynumber: 2.4 Consensus size: 21
14130593 ATATATATTT
14130603 ATATATTTATATTTAAAAAATA
1 ATAT-TTTATATTTAAAAAATA
14130625 ATATTTTATATTTAAAAAATA
1 ATATTTTATATTTAAAAAATA
14130646 ATATTTTAT
1 ATATTTTAT
14130655 TAATTTCGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 26 0.87
22 4 0.13
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATATTTTATATTTAAAAAATA
Found at i:14131912 original size:16 final size:16
Alignment explanation
Indices: 14131888--14131918 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14131878 CAAATTGGCA
14131888 TTTTGGTTTTTTTTTT
1 TTTTGGTTTTTTTTTT
*
14131904 TTTTTGTTTTTTTTT
1 TTTTGGTTTTTTTTT
14131919 CATTTCTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (16 bp):
TTTTGGTTTTTTTTTT
Found at i:14132669 original size:13 final size:14
Alignment explanation
Indices: 14132651--14132679 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
14132641 TTCTTTTAAA
14132651 TATATATC-AATAT
1 TATATATCAAATAT
14132664 TATATATCAAATAT
1 TATATATCAAATAT
14132678 TA
1 TA
14132680 ATTCGATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (14 bp):
TATATATCAAATAT
Found at i:14134512 original size:11 final size:12
Alignment explanation
Indices: 14134476--14134517 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
14134466 TTTATTTGTA
14134476 TTTTAGTTT--T
1 TTTTAGTTTAAT
14134486 TTTTAGTTTAAT
1 TTTTAGTTTAAT
*
14134498 TTTTGGTTTAAT
1 TTTTAGTTTAAT
14134510 TTTT-GTTT
1 TTTTAGTTT
14134518 TTTTAGTCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
10 9 0.31
11 4 0.14
12 16 0.55
ACGTcount: A:0.14, C:0.00, G:0.12, T:0.74
Consensus pattern (12 bp):
TTTTAGTTTAAT
Found at i:14135142 original size:20 final size:18
Alignment explanation
Indices: 14135112--14135155 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
14135102 ATTGCATGGT
* *
14135112 ATTTATTTTTGCATGACTA
1 ATTTATATTTGAATGA-TA
14135131 ATATTATATTTGAATGATA
1 AT-TTATATTTGAATGATA
14135150 ATTTAT
1 ATTTAT
14135156 TTGCCTAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 4 0.18
19 6 0.27
20 12 0.55
ACGTcount: A:0.34, C:0.05, G:0.09, T:0.52
Consensus pattern (18 bp):
ATTTATATTTGAATGATA
Found at i:14135227 original size:20 final size:21
Alignment explanation
Indices: 14135161--14135247 Score: 70
Period size: 21 Copynumber: 4.1 Consensus size: 21
14135151 TTTATTTGCC
14135161 TAATATATTTGTTT-TCATGAT
1 TAATATATTTGTTTGT-ATGAT
* *
14135182 TAATATATTTGTGTG-ATTAT
1 TAATATATTTGTTTGTATGAT
* *
14135202 TGATATATTTATTTGTATGAT
1 TAATATATTTGTTTGTATGAT
* * *
14135223 TATATTTAATTTGATTGCATGAT
1 TA-ATAT-ATTTGTTTGTATGAT
14135246 TA
1 TA
14135248 TTAATATATT
Statistics
Matches: 51, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
20 16 0.31
21 18 0.35
22 3 0.06
23 14 0.27
ACGTcount: A:0.30, C:0.02, G:0.13, T:0.55
Consensus pattern (21 bp):
TAATATATTTGTTTGTATGAT
Found at i:14135295 original size:24 final size:24
Alignment explanation
Indices: 14135195--14135331 Score: 117
Period size: 24 Copynumber: 5.9 Consensus size: 24
14135185 TATATTTGTG
* *
14135195 TGATTATTGATATATTTATTTGTA
1 TGATTATTAATATATTTATTTGCA
*
14135219 TGATTA-T-ATTTAATTTGA-TTGCA
1 TGATTATTAATAT-ATTT-ATTTGCA
* * *
14135242 TGATTATTAATATATTTAATTACT
1 TGATTATTAATATATTTATTTGCA
* *
14135266 TAATTATTAATATATTTATTTCCA
1 TGATTATTAATATATTTATTTGCA
*
14135290 TG---ATT-ATATATTTAATTGCA
1 TGATTATTAATATATTTATTTGCA
*
14135310 TGATTATTAATTTATTTATTTG
1 TGATTATTAATATATTTATTTG
14135332 TGTAATTGTA
Statistics
Matches: 90, Mismatches: 14, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
20 15 0.17
21 3 0.03
22 3 0.03
23 19 0.21
24 47 0.52
25 3 0.03
ACGTcount: A:0.33, C:0.04, G:0.08, T:0.55
Consensus pattern (24 bp):
TGATTATTAATATATTTATTTGCA
Found at i:14135300 original size:20 final size:20
Alignment explanation
Indices: 14135275--14135326 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
14135265 TTAATTATTA
14135275 ATATATTTATTTCCATGATT
1 ATATATTTATTTCCATGATT
* *
14135295 ATATATTTAATTGCATGATT
1 ATATATTTATTTCCATGATT
14135315 AT-TAATTTATTT
1 ATAT-ATTTATTT
14135327 ATTTGTGTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 1 0.04
20 27 0.96
ACGTcount: A:0.33, C:0.06, G:0.06, T:0.56
Consensus pattern (20 bp):
ATATATTTATTTCCATGATT
Found at i:14135338 original size:32 final size:31
Alignment explanation
Indices: 14135302--14135362 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 31
14135292 ATTATATATT
*
14135302 TAATTGCATGATTATTAATTTATTTATTTGTG
1 TAATTGCATGATTATTAA-TAATTTATTTGTG
*
14135334 TAATTGTATGATTATTAATAATTTATTTG
1 TAATTGCATGATTATTAATAATTTATTTG
14135363 CATAGTTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 10 0.37
32 17 0.63
ACGTcount: A:0.31, C:0.02, G:0.11, T:0.56
Consensus pattern (31 bp):
TAATTGCATGATTATTAATAATTTATTTGTG
Found at i:14135421 original size:24 final size:24
Alignment explanation
Indices: 14135394--14135455 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
14135384 TTATTATTGC
*
14135394 ATGATTTTATATTTATTACATGAT
1 ATGATATTATATTTATTACATGAT
*
14135418 ATGATATTATATGTTATTGCATGAT
1 ATGATATTATAT-TTATTACATGAT
*
14135443 -TAATATTATATTT
1 ATGATATTATATTT
14135456 GAATGATATT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
23 2 0.06
24 21 0.62
25 11 0.32
ACGTcount: A:0.34, C:0.03, G:0.10, T:0.53
Consensus pattern (24 bp):
ATGATATTATATTTATTACATGAT
Found at i:14135424 original size:19 final size:19
Alignment explanation
Indices: 14135387--14135425 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
14135377 TATTTATTTA
* * *
14135387 TTATTGCATGATTTTATAT
1 TTATTACATGATATGATAT
14135406 TTATTACATGATATGATAT
1 TTATTACATGATATGATAT
14135425 T
1 T
14135426 ATATGTTATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.31, C:0.05, G:0.10, T:0.54
Consensus pattern (19 bp):
TTATTACATGATATGATAT
Found at i:14135575 original size:20 final size:19
Alignment explanation
Indices: 14135552--14135668 Score: 66
Period size: 20 Copynumber: 5.9 Consensus size: 19
14135542 ATTTGATTTC
14135552 ATGATTATATATTTGCATGA
1 ATGATTATATATTTGCAT-A
14135572 ATGATTATTAATATATTTGCATA
1 ATG---ATT-ATATATTTGCATA
* *
14135595 GT-ATTTTATATTATTGCATA
1 ATGATTATATA-T-TTGCATA
14135615 AT-ATTATATATTT--AT-
1 ATGATTATATATTTGCATA
*
14135630 ATGATTAT-TATCATTGCATG
1 ATGATTATATAT--TTGCATA
*
14135650 ATAATTAATATATTTGCAT
1 ATGATT-ATATATTTGCAT
14135669 GACATTCTTG
Statistics
Matches: 78, Mismatches: 5, Indels: 28
0.70 0.05 0.25
Matches are distributed among these distances:
15 5 0.06
16 7 0.09
17 2 0.03
18 6 0.08
19 7 0.09
20 29 0.37
21 2 0.03
22 3 0.04
23 5 0.06
24 12 0.15
ACGTcount: A:0.36, C:0.05, G:0.09, T:0.50
Consensus pattern (19 bp):
ATGATTATATATTTGCATA
Found at i:14142899 original size:43 final size:43
Alignment explanation
Indices: 14142838--14143014 Score: 214
Period size: 43 Copynumber: 4.1 Consensus size: 43
14142828 GAATGATCTT
*
14142838 ATTTTATTTTCCAAAAGTTTCAAAGCCTCAGTTGTGGGGGAGC
1 ATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGGGGAGC
* *
14142881 ATTTTATTTTTCAAAAGTTTCAAAGCC-CTAGTTGTAGGGGAGT
1 ATTTTATTTTTCAAAAGTTTCAAAGCCTC-AGTTGTGGGGGAGC
* * * *
14142924 ATTTAATTTTT-AAAAGTTTCAAAAGCATCAATTGTGGGGGAGT
1 ATTTTATTTTTCAAAAGTTTC-AAAGCCTCAGTTGTGGGGGAGC
* * * **
14142967 ATTTTATTTTTCAAAAGTTCCTAAGCCTTAGTTGTGGATGAGC
1 ATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGGGGAGC
14143010 ATTTT
1 ATTTT
14143015 TCAACAAAAA
Statistics
Matches: 114, Mismatches: 16, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
42 10 0.09
43 95 0.83
44 9 0.08
ACGTcount: A:0.28, C:0.12, G:0.20, T:0.40
Consensus pattern (43 bp):
ATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGGGGAGC
Found at i:14144071 original size:24 final size:24
Alignment explanation
Indices: 14144043--14144151 Score: 82
Period size: 24 Copynumber: 4.6 Consensus size: 24
14144033 TTATGAATGT
14144043 ATTTGCATGATTATTGATATATTC
1 ATTTGCATGATTATTGATATATTC
* *
14144067 ATTTGGATGATTA-T-ATTTAATTTC
1 ATTTGCATGATTATTGATAT-A-TTC
*
14144091 A-TTGCATGATTA-TGAATATATTT
1 ATTTGCATGATTATTG-ATATATTC
* * * * *
14144114 AATTACTTGATTATTAATATATTT
1 ATTTGCATGATTATTGATATATTC
*
14144138 ATTTGTATGATTAT
1 ATTTGCATGATTAT
14144152 ATATTTAATT
Statistics
Matches: 67, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
22 3 0.04
23 16 0.24
24 44 0.66
25 4 0.06
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.52
Consensus pattern (24 bp):
ATTTGCATGATTATTGATATATTC
Found at i:14144171 original size:20 final size:20
Alignment explanation
Indices: 14144125--14144171 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
14144115 ATTACTTGAT
* * *
14144125 TATTAATATATTTATTTGTA
1 TATTTATATATTTAATTGCA
14144145 TGA-TTATATATTTAATTGCA
1 T-ATTTATATATTTAATTGCA
14144165 TATTTAT
1 TATTTAT
14144172 TTGCATGGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
19 1 0.05
20 20 0.91
21 1 0.05
ACGTcount: A:0.34, C:0.02, G:0.06, T:0.57
Consensus pattern (20 bp):
TATTTATATATTTAATTGCA
Found at i:14144254 original size:55 final size:55
Alignment explanation
Indices: 14144144--14144261 Score: 148
Period size: 55 Copynumber: 2.1 Consensus size: 55
14144134 ATTTATTTGT
* * * * **
14144144 ATGATTATATATTTAATTGCATATTTATTTGCATGGTTTATATATTTTTGTTTGC
1 ATGATTATATATTTAATTGCATATTCATTTGCATGGATTATACATTGTTAATTGC
* *
14144199 ATGATTATATATTTAATTGCATATTCATTTGTATATGATT-TACATTGTTAATTGC
1 ATGATTATATATTTAATTGCATATTCATTTGCAT-GGATTATACATTGTTAATTGC
14144254 ATGATTAT
1 ATGATTAT
14144262 TAATATATTT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
55 51 0.94
56 3 0.06
ACGTcount: A:0.29, C:0.06, G:0.12, T:0.53
Consensus pattern (55 bp):
ATGATTATATATTTAATTGCATATTCATTTGCATGGATTATACATTGTTAATTGC
Found at i:14144532 original size:24 final size:25
Alignment explanation
Indices: 14144505--14144562 Score: 100
Period size: 24 Copynumber: 2.4 Consensus size: 25
14144495 CATGATTATG
14144505 TATTTGCATGAATAGTTATTAATA-
1 TATTTGCATGAATAGTTATTAATAT
*
14144529 TATTTGCATGAATGGTTATTAATAT
1 TATTTGCATGAATAGTTATTAATAT
14144554 TATTTGCAT
1 TATTTGCAT
14144563 AGTATTTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 23 0.72
25 9 0.28
ACGTcount: A:0.33, C:0.05, G:0.14, T:0.48
Consensus pattern (25 bp):
TATTTGCATGAATAGTTATTAATAT
Found at i:14144609 original size:16 final size:17
Alignment explanation
Indices: 14144546--14144602 Score: 53
Period size: 20 Copynumber: 3.1 Consensus size: 17
14144536 ATGAATGGTT
14144546 ATTAATATTATTTGCATA
1 ATTAATA-TATTTGCATA
*
14144564 GTATT-TTATATTATTGCATA
1 --ATTAATATA-T-TTGCATA
14144584 ATTAATATATTTGCATA
1 ATTAATATATTTGCATA
14144601 AT
1 AT
14144603 AGTATATATT
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
17 9 0.28
18 6 0.19
19 7 0.22
20 10 0.31
ACGTcount: A:0.37, C:0.05, G:0.07, T:0.51
Consensus pattern (17 bp):
ATTAATATATTTGCATA
Done.