Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14313602
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35

Warning! 50000 characters in sequence are not A, C, G, or T


File 74 of 74

Found at i:14303976 original size:2 final size:2

Alignment explanation


    Indices: 14303971--14304009  Score: 69
    Period size: 2  Copynumber: 19.5  Consensus size: 2

   14303961 TCTCTCTCTC

                                       *                              
   14303971 TA TA TA TA TA TA TA TA TA AA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

   14304010 TCACTCTGTC


Statistics
Matches: 35,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   2   35  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
TA

Found at i:14304166 original size:16 final size:16

Alignment explanation


    Indices: 14304145--14304175  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

   14304135 AATTTGTAAA

                            
   14304145 TTTTATTTTAAAATTT
          1 TTTTATTTTAAAATTT

                      *    
   14304161 TTTTATTTTATAATT
          1 TTTTATTTTAAAATT

   14304176 CTATTAATAA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71


Consensus pattern (16 bp):   
TTTTATTTTAAAATTT

Found at i:14306890 original size:4 final size:4

Alignment explanation


    Indices: 14306874--14306938  Score: 76
    Period size: 4  Copynumber: 16.2  Consensus size: 4

   14306864 AGCCATATTA

                      *            *            *   *               *  
   14306874 GTAT GTAT ATAT GTAT GTAC GTAT GTAT GCAT TTAT GTAT GTAT GCAT
          1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT

                 *               
   14306922 GTAT TTAT GTAT GTAT G
          1 GTAT GTAT GTAT GTAT G

   14306939 GCTGCTAAAC


Statistics
Matches: 49,  Mismatches: 12, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
   4   49  1.00

ACGTcount: A:0.26, C:0.05, G:0.22, T:0.48


Consensus pattern (4 bp):   
GTAT

Found at i:14307661 original size:1 final size:1

Alignment explanation


    Indices: 14307655--14307680  Score: 52
    Period size: 1  Copynumber: 26.0  Consensus size: 1

   14307645 GCACGAAGGC

                                      
   14307655 TTTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTT

   14307681 AATTTCAGCT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   25  1.00

ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00


Consensus pattern (1 bp):   
T

Found at i:14309456 original size:2 final size:2

Alignment explanation


    Indices: 14309451--14309482  Score: 55
    Period size: 2  Copynumber: 16.0  Consensus size: 2

   14309441 ACACACACAC

                         *                                 
   14309451 AT AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

   14309483 GTTAAAACCG


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47


Consensus pattern (2 bp):   
AT


Done.