genome.fa.s217.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168042.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_294, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37975

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395--1034	181	3.5	182	79	4	663	37	10	9	42	1.73
2800--2824	13	1.9	13	100	0	50	44	0	8	48	1.32
2792--2831	12	3.2	12	86	6	53	40	0	7	52	1.30
2991--3035	16	2.8	16	82	3	54	48	0	2	48	1.13
3041--3078	14	2.7	14	88	8	51	36	0	2	60	1.11
3210--3277	31	2.3	30	75	17	70	41	2	5	50	1.42
3727--3777	17	2.9	17	72	16	50	58	1	0	39	1.09
4336--4402	24	2.6	26	73	22	68	49	1	0	49	1.10
4328--4386	24	2.5	24	81	13	68	47	1	1	49	1.21
4449--4489	13	3.2	12	86	10	55	51	2	0	46	1.14
4466--4536	26	2.8	24	77	12	61	47	0	2	49	1.16
4787--4845	28	2.1	29	84	9	77	45	1	0	52	1.10
5286--5338	13	3.4	15	80	20	56	45	1	0	52	1.11
5668--5708	21	2.1	19	86	9	55	41	0	2	56	1.13
7533--7574	21	2.0	21	86	9	59	45	2	0	52	1.13
8643--8702	23	2.7	24	82	12	67	55	0	3	41	1.16
8703--8745	23	1.9	22	85	4	59	58	4	0	37	1.19
9097--9128	13	2.3	15	89	10	50	28	0	6	65	1.16
9701--9739	19	2.1	19	85	0	51	56	2	0	41	1.13
10182--10246	26	2.6	24	79	9	76	52	0	3	44	1.16
10183--10266	17	4.8	18	70	20	63	52	0	2	45	1.13
10931--10977	6	8.0	6	78	21	55	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11017--12097	177	6.0	178	75	9	852	41	10	8	40	1.68
11941--11990	17	2.8	19	79	14	70	44	8	4	44	1.52
12623--12654	15	2.1	15	94	0	55	65	0	3	31	1.08
12546--12771	109	2.1	109	89	3	339	42	8	6	42	1.61
12655--14024	180	7.7	180	77	8	1031	41	9	8	40	1.68
12659--13837	361	3.3	359	77	7	852	42	10	7	39	1.68
14581--14642	31	2.0	31	81	12	74	43	6	0	50	1.28
15779--15823	15	3.2	14	82	17	58	51	0	2	46	1.13
15787--15817	14	2.1	15	94	5	55	51	0	0	48	1.00
15789--15837	14	3.6	14	76	17	50	55	0	0	44	0.99
15779--15843	27	2.3	29	78	21	77	50	0	3	46	1.17
15998--16031	13	2.5	13	90	4	50	47	0	2	50	1.16
16277--16602	181	1.8	179	79	4	377	40	7	11	40	1.69
17071--17872	181	4.4	180	79	4	758	39	7	9	42	1.67
17056--17872	362	2.3	359	80	5	860	39	7	9	42	1.67
18515--18579	16	4.1	16	79	16	66	52	0	3	44	1.16
18515--18579	32	2.1	31	88	8	96	52	0	3	44	1.16
18724--18799	13	6.1	13	70	14	61	44	0	2	52	1.14
19145--19184	10	4.2	10	81	12	57	42	0	0	57	0.98
19421--19473	17	2.8	20	77	16	67	50	0	1	47	1.12
19420--19482	20	3.3	20	73	10	60	50	0	1	47	1.10
19593--19647	21	2.8	19	77	20	60	45	1	5	47	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19828--19879	15	3.5	15	82	12	63	55	0	0	44	0.99
19822--19872	26	2.0	26	85	14	70	56	0	0	43	0.99
19982--20017	18	2.0	18	89	10	56	41	0	2	55	1.14
19981--20077	44	2.4	40	73	16	92	47	0	2	50	1.12
20037--20086	17	2.8	17	78	9	55	48	0	0	52	1.00
20007--20098	31	3.1	29	78	10	80	48	0	2	48	1.13
22280--22342	23	2.8	23	76	4	67	44	3	0	52	1.17
23211--23266	19	2.8	19	81	5	58	46	3	1	48	1.30
23336--23406	22	3.2	23	72	20	69	54	0	0	45	0.99
23338--23424	45	2.0	44	84	6	113	56	0	0	43	0.99
23887--23926	20	1.9	20	85	10	53	50	2	2	45	1.28
24414--24444	12	2.6	12	89	0	53	45	0	0	54	0.99
24523--24597	26	3.0	25	77	12	75	53	1	0	45	1.08
24524--24579	21	2.8	19	75	19	60	53	1	0	44	1.11
25216--25262	19	2.5	20	83	13	64	44	0	4	51	1.21
25565--25849	143	2.0	144	79	6	310	44	5	8	41	1.56
25712--27909	180	12.2	182	73	9	1120	39	8	10	41	1.69
27774--28054	145	1.9	146	84	5	381	41	7	8	42	1.63
27640--28401	325	2.4	314	80	7	817	41	8	9	40	1.68
28093--28345	133	1.9	134	84	9	345	36	8	10	44	1.69
28483--28915	181	2.4	181	82	3	496	42	10	10	36	1.74
29188--29228	22	1.9	21	90	5	64	39	2	2	56	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29335--29369	6	5.7	6	86	6	52	51	0	0	48	1.00
29366--29433	15	4.5	14	74	20	57	44	0	1	54	1.09
30161--30212	22	2.4	20	76	17	50	40	1	3	53	1.30
30341--30382	13	3.2	13	90	6	59	42	2	0	54	1.13
30345--30427	19	4.5	19	74	14	68	50	1	1	46	1.16
31291--31386	38	2.4	41	84	6	119	43	3	1	52	1.24
31251--31362	61	1.9	61	83	5	140	42	3	0	52	1.24
31406--31443	16	2.2	18	90	9	62	36	0	2	60	1.11
31681--31735	29	1.9	28	82	10	67	47	0	5	47	1.25
33283--33379	46	2.1	46	81	5	108	47	4	3	45	1.37
33743--33783	12	3.3	12	83	6	55	53	2	0	43	1.13
34300--34362	27	2.3	26	80	17	67	42	4	4	47	1.45
35012--35091	16	4.9	16	73	14	65	51	0	1	47	1.08
35030--35081	22	2.4	21	71	9	50	50	0	1	48	1.12
35012--35114	16	6.4	16	69	17	63	48	1	1	47	1.24
35014--35085	13	5.7	13	73	15	53	50	0	1	48	1.09
35674--35709	17	2.1	17	90	10	56	44	2	0	52	1.15
35750--35843	17	5.4	17	67	25	52	50	2	1	46	1.20
35780--35864	19	4.6	19	75	20	74	51	2	0	45	1.13
35871--35941	33	2.2	32	80	12	81	36	5	1	56	1.32
35898--35947	24	2.1	24	82	14	59	38	4	0	58	1.17
36096--36662	180	3.2	178	79	10	546	40	9	8	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36805--36849	22	2.1	21	83	4	54	51	8	2	37	1.46
37431--37468	14	2.5	15	87	8	51	34	2	2	60	1.24

Tables:   1

The End!