Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168044.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_296, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37669
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Found at i:7220 original size:26 final size:26
Alignment explanation
Indices: 7191--7243 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
7181 CCGGTCTGAT
7191 CTTACACTAGGAATCAACTCCGTATG
1 CTTACACTAGGAATCAACTCCGTATG
* * *
7217 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATCAACTCCGTATG
7243 C
1 C
7244 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATCAACTCCGTATG
Found at i:8113 original size:26 final size:26
Alignment explanation
Indices: 8077--8126 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
8067 CTGGTATGAT
8077 CTTACACTAGGAATGAACTCCGTAAG
1 CTTACACTAGGAATGAACTCCGTAAG
*
8103 CTTAGACTAGGAATGAACTCCGTA
1 CTTACACTAGGAATGAACTCCGTA
8127 TGCCTAAGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTAAG
Found at i:8592 original size:890 final size:891
Alignment explanation
Indices: 6455--13464 Score: 8851
Period size: 891 Copynumber: 7.9 Consensus size: 891
6445 CACCTACGTG
* * *
6455 CTGTCGATCCTGCTG-T-CATAACCCTCAGTCCGATCTGATCTTAGA-TAGGGAATGAACTCCGT
1 CTGTCGATCCTGCTGCTGC--AACCCTCGGTCTGGTCTGATCTTAGACT-GGGAATGAACTCCGT
* * * * * * *
6517 ATGCCTAAGCCAACCGACGAAACGAGCGGACGGACAGGTACTACGCCTACTAGAGTGGCGGGATG
63 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATG
* *
6582 CACAAGCCGTGGATCGATAGGGTGGTACGTGGGTTTAGGCACATCTTC-------TGCCATGCCA
128 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCA
*
6640 ATGCCATTTTTATGGCTTGTAAATTCGTACAATGGTCCCTTTAA-CCTTCATGTGAAGTTTCATG
193 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC-TTAAGCCTTCATGTGAAGTTTCATG
* * * * *
6704 GCAAGACGACTCGATTTCTATTTTTCACGATTTTTAAAACTTTTTATGGTTTGGGATTCTTTTAA
257 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAA
* * * *
6769 AATTTTTTCAGAAGGTGTTTTGGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGGAT
322 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* *
6834 GCACAAAAAAATTTAGCTAAAAACTCGAAGTATACAGGATTTTGTGACCATTTGAAAAAAGTGTC
387 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
* *
6899 CCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA-GTTCTTTAAGGG
452 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
6963 GGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGAGGCCAATATAAGGGCCAAGTACCAGCACCCA
517 GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * *
7028 TCGCACATCATGTGCGCACA--CCCCCCCAATCGCCAGAA-CCTCAATGCCGCCAGTCAAGTTCT
582 TCACACATCATGTGCGCACACCCCCCCCCAATCGCCGGAACCCT-AATGCCGTCGGTCAGGTTCT
* * ** ** * *
7090 CCGATGACGCTCCGATGATGGTGCCCTGGGCAAAAAAAAATGTGGCACCAGCACATGCCCGAGCC
646 CCGACGATGCTCCGGCGATGGTGCCCCAGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCC
** * * *
7155 CAGCATGTGCACTTGTAACCCTC-AGTCCGGTCTGATCTTACACTAGGAATCAACTCCGTATGCT
711 CAGCATGTGCACCCGCAACCCTCGA-TCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCT
* *
7219 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAA-GAGCGTGCGGGCGTTCCA-C
775 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CAAAATGAGCGTGCGGGCGCT-CAGC
*
7282 CGGCCAGAGGGGAAGGATGCGCAAGCCGA-GGATCGGTCGGGTCCCCCCCTA--CA
838 CGGCCAGAGGGGCAGGATGCGCAAGCCGAGGGATCGGT-GGGT-CCCCCCTATGCA
* * * * * *
7335 TGCTGCCGATCCTGCTGCCGTAACCCTCGGTC-GGATCCGATCTTAGATTGGGAATAAACTCCGT
1 --CTGTCGATCCTGCTGCTGCAACCCTCGGTCTGG-TCTGATCTTAGACTGGGAATGAACTCCGT
* ** * *
7399 ATGCCTAAGCCAATCGACGAAACGA----GCGGGCGGGCACTATACCGGCCAGAGAGGCAGGATG
63 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATG
*
7460 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC-TCATATTTTTGCTATGCCA
128 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCA
7524 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
193 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
* * * *
7589 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGATTCAGGATTTTTTTAAA
258 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAA
*
7654 ATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
323 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* *
7719 CACCAAAAAATTCAGCTAAAAAATCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCC
388 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCC
7784 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
453 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
** *
7849 GTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCAT
518 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
** * **
7914 TGCACATCATGTGCGCACA-CCCCCCCCAATCGTCAAAACCCTAATGCCGTCGGTCAGGTTCTCC
583 CACACATCATGTGCGCACACCCCCCCCCAATCGCCGGAACCCTAATGCCGTCGGTCAGGTTCTCC
* * ** * * *
7978 AACGATGCTCCGGCGATGGTTCCTTAGGCGAAAAAAAATGCGGCACCAACACATGCCTGAGCCTA
648 GACGATGCTCCGGCGATGGTGCCCCAGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * *
8043 GCATGTGCACCCACAACCCTCGATCTGGTATGATCTTACACTAGGAATGAACTCCGTAAGCTTAG
713 GCATGTGCACCCGCAACCCTCGATCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAG
* * * * * * * *
8108 ACTAGGAATGAACTCCGTATGCCTAAGTAAACTCACAAAACGAGTGTGCGGGGGCTCAACCAGCC
778 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCC
* * *
8173 AGAGGGGCAGGATGCGCAAACCGAGAG-TCGAATGGGTCCCCCCTATGCA
843 AGAGGGGCAGGATGCGCAAGCCGAGGGATCG-GTGGGTCCCCCCTATGCA
* * * * * *
8222 CTATCAATCCTGCTGCTGCAAGCCTTGGTCTGGTCTGATCTTAGACTAGGAATGAACTTCGTATG
1 CTGTCGATCCTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
8287 CCTAAGCCAACCGACGAAACGAGCGGGTGGGTGGGCACTATGCCGACCAGAGAGGCGGGTTGCGC
66 CCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGC
8352 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATG
131 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATG
* * *
8417 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTTAAGTTTCAGGGCAA
196 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAA
* * * *
8482 GACGACTCGTTCTCTATTTTTTAGGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTAAAATT
261 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATT
* * * *
8547 CTATCAGAAGGAGGTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
326 TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
8612 AAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
391 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * * *
8677 TGTT-AGACACTTTAATGGTTACTAGCAGCAAACTTGTAAAATCTCAAACGCTCTTTAAAGGGGT
456 T-TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
8741 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCTCCCAT-A
520 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA
* * *
8805 GCACATCATGTGCGCACACCCCCCCCCGCCCGCCCCAATCGTCC-GAACCCCAATGCCGTCAGTT
585 -CACATCATGTGCGCACA-------CC-CCC-CCCCAATCG-CCGGAACCCTAATGCCGTCGGTC
*
8869 AGGTTCT-C--CGA--------CGATGGTGCCCCAGGCAAAAAAAAAATGCGGCACCAGCACATG
639 AGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCAGGC-GAAAAAAAATGCGGCACCAGCACATG
* * * * * * * *
8923 CCCGAGCCTAGTATGTGCACCCGCAACCCTCGGTCCTGTCCGATCTTACATTTGGAATGAACTTC
703 CCCGAGCCCAGCATGTGCACCCGCAACCCTCGATCCGGTCTGATCTTACACTGGGAATGAACTCC
* * *
8988 GTATGCTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCGC
768 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGC
* * * * * ** **
9053 TCAGTCTGCCAGAGGGGCAGGACGCGTAAGCC-AGGGATCGGCTAGGTCCCCCCTGCGTG
833 TCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGGATCGG-TGGGTCCCCCCTATGCA
* * * * *** * *
9112 CTGTCAATCCTACTACTGTAACCCTCAACCTGGTCTGATCTTAGATTGGGAATGAACTCCGTACG
1 CTGTCGATCCTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* ** * *
9177 CCTAAGCCAACCGATGAAACGAGCGGGGCGGGCGGGCACTACATCAACCAGAGAGGCAGGATGCG
66 CCTAAGCCAACCGACGAAACGAGC-GGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCG
* *
9242 CAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTCCCATGCCAAT
130 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAAT
*
9307 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCGCTTAAGCCTTCATGTGAAGTTTCATGGCA
195 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
* * ** * *
9372 AGACAACTCGTTTTATATTTTTCATAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTTAAAT
260 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAAT
* * *
9437 TATTTCAGAAGGAGTTTTGGTCCTAAACTTGGTAGACGTGATCCTTGTATTTGTT-TTGGCATGC
325 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT-TTGTTGGCATGC
*
9501 ACAAAAAAATTCAACTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCC
389 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
9566 CATTTCAAACACTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTTAAGGAGG
454 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
9631 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATC
519 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* *
9696 ACACATCATGTGCGCACACCCCCCCCCCGTCGCCCCAATCGTCGGAACCCTAATGCTGTCGGTCA
584 ACACATCATGTGCGCACA------CCCC--C-CCCCAATCGCCGGAACCCTAATGCCGTCGGTCA
* * * * * *
9761 GGTTCTCTGGCAATGCTCCGGCGATGGTGCCCCAAGCGAAAAAAAATACGGCACCAGCACAGGCC
640 GGTTCTCCGACGATGCTCCGGCGATGGTGCCCCAGGCGAAAAAAAATGCGGCACCAGCACATGCC
* * * * *
9826 CGAGCCTAGAATGTGCA--C-CTA----CAATCC--TC-G---GT---CT----A-G---TCCG-
705 CGAGCCCAGCATGTGCACCCGCAACCCTCGATCCGGTCTGATCTTACACTGGGAATGAACTCCGT
* * *
9866 AT-CTTACACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTC
770 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTC
* *
9930 AGCCGGCCAGAGGGGCA-GATTGCACAAGCCG-GGGATCGGTCGGGTCCCCCC-CTGCA
835 AGCCGGCCAGAGGGGCAGGA-TGCGCAAGCCGAGGGATCGGT-GGGTCCCCCCTATGCA
* * * ** *
9986 -TGCTGCCAGTCCTACTG-TCGCAAACCTCCATCTGGTCCT-ATCTTAGACTAGGAATGAACTCC
1 CTG-T-CGA-TCCTGCTGCT-GCAACCCTCGGTCTGGT-CTGATCTTAGACTGGGAATGAACTCC
* ** *
10048 GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGAGGGCACTACATCGGCCAGAGAGGC-GGA
61 GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGA
**
10112 TGCGCAAGCTATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTT-CCATG
126 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TTGCCATG
*
10176 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTAA
190 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
* * * *
10241 TGGCAAGACAACTCGCTTTCTATTTTTCAC-ATTTTTTGAAAC-TTTTATGGTTCGGGATTTTCT
255 TGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTTGAAACTTTTTACGGTTCGGGATTTTTT
* * * * **
10304 TAAATTTTTTTCAGAAGGAGTTTTAGCCCCAAACTTGGTTGACGTGATCCTTGTTTTTTTGTTAA
319 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * * ** *
10369 CATGTACAAAAAAATTCAGCTAAAAAGTCTAAGTGTACAATATTTTGTGACCATTTGAAAAAAAT
384 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGT
* * * * *
10434 GTCCCCATTTTAGACACTTTAATTGCTACTGGCAACAAACTTGTAAAATCTCAAATGCTTTTTAA
449 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
10499 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
514 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
** * * ** **
10564 CCATCGGACATCATGTGCGCTCA---CCCCCCAATCGCCGAAACCC-AATGTTGTCGGTTTGGTT
579 CCATCACACATCATGTGCGCACACCCCCCCCCAATCGCCGGAACCCTAATGCCGTCGGTCAGGTT
* ** * * ** *
10625 CTTCGGTGATTCTCCGGTGATGGTGCCCTGGGCGAAAAAAAATACGGCACCAGCACATGCCCGAG
644 CTCCGACGATGCTCCGGCGATGGTGCCCCAGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAG
*
10690 CCCAGCATGTGCACCCGCAACCCTCGATCCGGTCTGATCTTACACTGGGAATGAACTCCATATGC
709 CCCAGCATGTGCACCCGCAACCCTCGATCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGC
* * *
10755 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGCACTCAACC
774 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCC
* *** **
10820 GGCCAAAGGGGCAGGATGCGCAAGCC-AGGGATCAACCGGGTCCCCCCCTATGTG
839 GGCCAGAGGGGCAGGATGCGCAAGCCGAGGGATC-GGTGGGT-CCCCCCTATGCA
* * * * * *
10874 TTG-CTGATCTTGCTACTGAAACCCTCGGTCTAGTC-CATTCTTAGACTGGGAATGAACTCCGTA
1 CTGTC-GATCCTGCTGCTGCAACCCTCGGTCTGGTCTGA-TCTTAGACTGGGAATGAACTCCGTA
* * * * ** * *
10937 TGCCTAAGCAAACAGA-GAAAATGAGCGGGCAGGCAAGCACTATGCCGACCAGAGAGGTGGGATG
64 TGCCTAAGCCAACCGACG-AAACGAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATG
* * * * *
11001 CGCAAGCCGTGGATCAATAGGGTGGTAGATGGGTTTAGGCTCATCTTCATATTTCTGCCATTCCA
128 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCA
* *
11066 TTACCATTTTTAT-GCTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
193 ATGCCATTTTTATGGC-TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
* * *
11130 GCAATACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTTA
257 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAA
*** * *
11195 AATTTTTTCAGAAGGAGTTTTCATCTCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAT
322 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* * * *
11260 GAAAAAAAAAATTTAGCTAAAAAATCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
387 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
* *
11325 CCCATTTCAGATACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
452 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
** * * * *
11390 GGTGTGAGTTCTTGAGGTTTGATGAGGGATAGAGGGCCAACATAATGGCCAAGTA-CAGTACCCA
517 GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * **
11454 TCACACATAATGTGCGCACACCCCCCCGCCCTCCCATCGCCGGAACCCTAATGCCACCGGTCAGG
582 TCACACATCATGTGCGCACA---CCCC-CCC-CCAATCGCCGGAACCCTAATGCCGTCGGTCAGG
* *
11519 TTCTCCGACGATGCTCCGGCGATGGTGCCCCAGGCGAAAAAAAGTACGGCACCAGCACATGCCCG
642 TTCTCCGACGATGCTCCGGCGATGGTGCCCCAGGCGAAAAAAAATGCGGCACCAGCACATGCCCG
* ** * * *
11584 AGCCCAGCATGTGCACCCCCAACCCTCGATCCATTCGGATCATACACTGGGAATGAACTCTGTAT
707 AGCCCAGCATGTGCACCCGCAACCCTCGATCCGGTCTGATCTTACACTGGGAATGAACTCCGTAT
** * *
11649 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGGGTGCGGGCGCTCAG
772 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAG
* *
11714 CTGGCCAGAGGGGCAGGATGCGCAAGCCG-GGGATTGGTCGGGTCCCCCCTCATG--
837 CCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGGATCGGT-GGGTCCCCCCT-ATGCA
* ** * * *
11768 CTGTTGATCCTGCTATTGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATA
1 CTGTCGATCCTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
11833 CCTAAGCCAACTGACGAAATGAGCGAGCGGGCGGGCACTAAGCTGACCAGAGAGGCGGGATGCGC
66 CCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGC
* * *
11898 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-CCATCCCAGTG
131 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATG
* *
11962 CCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTAATGGCAA
196 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAA
* * * *
12027 GACGACTCATTTTCTATTTTTCACTATTTTCGAAACTTTTTACGATTCGGGATTTTTTTAAAATT
261 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATT
* *
12092 TTTTCA-AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCAC
326 TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * ** * * *
12156 AAAATAATTCAACTAAAAACTCGAAGTGTATTGGATTTTGTGACCATTTGACAATAGTGTCCCTA
391 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
12221 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
456 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
12286 AGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACTAGCACCCATCAC
521 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAC
*
12351 ACATCATGTGCGCACACCCCACCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
586 ACATCATGTGCGCACA--CC-CCCCCCCAATCGCCGGAACCCTAATGCCGTCGGTCAGGTTCTCC
** * * * * * *
12416 GGTGATTCTCCGGTGATGGTGCCCCGGGCAAAAAAAAATGTGGCACCAGCACATGCCCAAGCCCA
648 GACGATGCTCCGGCGATGGTGCCCCAGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * *
12481 GCATGTGCACCCACAACTCTCAATCCGGTCTGATCTTACATTGGGAATGAACTTCGTATGCTTAG
713 GCATGTGCACCCGCAACCCTCGATCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAG
* * * *
12546 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCGGGCACTCAGCTGGTC
778 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCC
* * **
12611 AGAGGGGCAGGATGCCCAAGCCGA-GGATCGGTGGGTCCCCCCTACGTG
843 AGAGGGGCAGGATGCGCAAGCCGAGGGATCGGTGGGTCCCCCCTATGCA
* * * * * * *
12659 CTGCCGATCTTGCGGCCGCAACCCTTGGTTTGATCTGATCTTAGACTGGGAATGAACTCCGTATG
1 CTGTCGATCCTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
12724 CCTATGCCAACCGACAAAACGAGCAGGCGGGCGAGCACTACGCCGGCCAGAGAGGCGGGATGTGC
66 CCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGC
* **
12789 AAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCCTGCCATGCCAATG
131 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATG
*
12854 CCATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAA
196 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAA
* * * *
12919 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGATTTGAGATTTTTTTAAAGTT
261 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATT
* *
12984 TTTTCAGATGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCAC
326 TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * ** *
13049 -AAAAAATTTAGCTAAAAATTCGAAGTGTACATAATTTTGTGACCATTTGAAAAAGGTGTCCCCA
391 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
13113 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
456 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
** *
13178 TGAGTTCTTGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCAACCATCAC
521 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAC
13242 ACATCATGTGCGCACACCACCCCCCCGCCCCTCCCAATCGCCGGAACCCTAATG-C-TACTGGTC
586 ACATCATGTGCG--CA-CA-----CC-CCCC-CCCAATCGCCGGAACCCTAATGCCGT-C-GGTC
* * * * *
13305 AGGTTCTCCGATGATGCTTCGACGATGGTGCCTCAGGC-AAAAAAAATGAGGCACCAGCACATGC
639 AGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCAGGCGAAAAAAAATGCGGCACCAGCACATGC
* ** * * *
13369 CCGAGCCCAGCATGTGCACCCGCAACCCTCGATCCGATCCAATCTTACACTGGGAATGAATTTCA
704 CCGAGCCCAGCATGTGCACCCGCAACCCTCGATCCGGTCTGATCTTACACTGGGAATGAACTCCG
* *
13434 TATGCTTAAACTAGGAATGAACTCCGTATGC
769 TATGCTTAGACTGGGAATGAACTCCGTATGC
13465 TTAGACTGGG
Statistics
Matches: 5349, Mismatches: 632, Indels: 279
0.85 0.10 0.04
Matches are distributed among these distances:
860 81 0.02
861 16 0.00
862 2 0.00
863 2 0.00
864 1 0.00
867 5 0.00
869 2 0.00
870 1 0.00
872 2 0.00
873 274 0.05
874 168 0.03
875 129 0.02
876 72 0.01
877 7 0.00
878 68 0.01
880 2 0.00
881 3 0.00
882 73 0.01
883 5 0.00
884 300 0.06
885 181 0.03
886 402 0.08
887 195 0.04
888 245 0.05
889 97 0.02
890 667 0.12
891 937 0.18
892 505 0.09
893 217 0.04
894 170 0.03
895 23 0.00
896 222 0.04
897 122 0.02
898 59 0.01
899 5 0.00
900 32 0.01
901 42 0.01
902 15 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (891 bp):
CTGTCGATCCTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
CCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGC
AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATG
CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAA
GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATT
TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
AAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAC
ACATCATGTGCGCACACCCCCCCCCAATCGCCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGAC
GATGCTCCGGCGATGGTGCCCCAGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
TGTGCACCCGCAACCCTCGATCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCAGA
GGGGCAGGATGCGCAAGCCGAGGGATCGGTGGGTCCCCCCTATGCA
Found at i:10764 original size:26 final size:26
Alignment explanation
Indices: 10728--10780 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10718 CCGGTCTGAT
10728 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
10754 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
10780 C
1 C
10781 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:13450 original size:26 final size:26
Alignment explanation
Indices: 13412--13490 Score: 95
Period size: 26 Copynumber: 3.0 Consensus size: 26
13402 CCGATCCAAT
* * *
13412 CTTACACTGGGAATGAATTTCATATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
13438 CTTAAACTAGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
13464 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
13490 C
1 C
13491 CTAAGTTAAC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:20041 original size:26 final size:26
Alignment explanation
Indices: 20003--20055 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19993 CCAATCTAAT
*
20003 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
*
20029 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
20055 C
1 C
20056 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:20936 original size:26 final size:26
Alignment explanation
Indices: 20898--20950 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20888 CTAGTCCGAT
*
20898 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTAGGAATGAACTCCATATG
* *
20924 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCATATG
20950 C
1 C
20951 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCATATG
Found at i:21833 original size:26 final size:26
Alignment explanation
Indices: 21783--21834 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21773 TGGTCCAATA
* * *
21783 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTAGGAATGAACTCCATATGC
21809 TTAGACTAGGAATGAACTCCATATGC
1 TTAGACTAGGAATGAACTCCATATGC
21835 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGC
Found at i:24042 original size:895 final size:895
Alignment explanation
Indices: 19233--27796 Score: 11044
Period size: 896 Copynumber: 9.7 Consensus size: 895
19223 GCTCATGACA
** * * * * *
19233 CCGGGGATCGATCAGGTCCCCCCTACGTGCTGTCGATCCTGCTGTCACAACCCTTAGTTCAGTTC
1 CCGGGGATCGGCCGGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCTCAG-TCTGGTC
* * **
19298 -AATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACTGATTAAACGAGCGGGCGGGCGGG
65 TGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* ** * * **
19362 CATTACGCCTACCAGAGAGGTGGGATGCACAAGCCGTGGATCGATAGGGTGGTACATGGGTTTAG
130 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
19427 GCACATCTTCATCTTTTTGCCATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCC
195 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
19492 CTTAAGCCTTCATGTGAAGTTTCATTGCAAGACAACTCATTTTCTATTTTTCATGATTTTTGAAA
260 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* *
19557 CTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGA
325 CTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
19622 AGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATCCAGCTAAAAGCTCAAAGTGTACAGGA
390 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGA
19687 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
455 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
19752 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGTATAGGGGGCCA
520 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
19817 ATATAAGGGCCAAGTACCAGCACCCATCGCACAAT-ATGTGCGCACACCCCCCCGTCCCCCCAAT
585 ATATAAGGGCCAAGTACCAGCACCCATCGCAC-ATCATGTGCGCACA-CCCCCCG-CCCCCCAAT
* * *
19881 CGTCGGAACCTCAA--T-GCC-GTC-GG---T-CAG-G-TTCTCCGGCGATGGTGCCCCGGGTGA
647 CGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGGTGA
* * * * * *** *
19935 AAAAACATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCTGCAACCCTCGATCCAATCT
712 AAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCC
* *
20000 AATCTTACACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA
777 GATCTTACACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA
* * ** * *
20065 CCCATGAAATGAGCGTACGAACGCTCAGTCGGCCAGAGGGGCAAGATGCGCAAG
842 CCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAG
* * * * * * *
20119 CTGGGGATCGGTCGGGTCTCCCCTACGTGCTAT-GATCCTACTGCCGCAACCCT-TGATCTGGTC
1 CCGGGGATCGGCCGGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCTCAG-TCTGGTC
* * * * * *
20182 TGATCTTTGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGAGGACGGGCGGG
65 TGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * * *
20247 CACTACGCCGGCCAGAGAGGCAGGATGAGCAAGCCGTGGATTGATAGGGTGGTAGGTTGGTTTAG
130 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
20312 GCACATCTTCATATTTCTACCATGCCAATGCCAATTTTATGGCTTGTAAATTCATACAAAGGTCC
195 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
20377 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAA
260 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * * *
20442 CTTTTTACGGTTCAGGACTGTTTTAAAATTTTTTCAGAAGGATTTTTTAG-CCCAAACTTGGTAG
325 CTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGA-GTTTTGGCCCCAAACTTGGTAG
* *
20506 ACGTGATCCTTGAATTTTTGTTGGCATGCCCAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGG
389 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGG
* *
20571 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGGCACTTTAATGGCTACTAGCAGCAAACC
454 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * *
20636 TGTAAAATCTCAAATGCTCATTAAGGGGATGAGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
519 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
20701 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGCCCCCTAATC
584 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGCCCCCCAATC
* * * * * *
20766 GTCGGAACCCCAATGTCTCCAGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGAGCGAA
648 GTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGGTGAA
* * * ** *
20831 AAAAAATGTGGCACCAGGACATGCTCGAGCCCAGCATGTGCATTCGCAACCCTCGGTCTAGTCCG
713 AAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCG
* *
20896 ATCTTACACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAC
778 ATCTTACACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
20961 CCACGAAACGAGCGTGCGGGCACTCAGTCGCCCAGAGGGGTAGGATGCACAAG
843 CCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAG
* ** * * * * *
21014 CCGGGGATCGACCGGGTCCCCCCCTGTGTGCTGTCAATCCTGCTACCATAACCCTCAGTCCGATC
1 CCGGGGATCGGCCGGGT-CCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCTGGTC
* *
21079 TGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGACGGG
65 TGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * * *
21144 CACTACGCAGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGTTGGTAGGTGGGTTTAG
130 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
21209 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAACTCATACAATGGTCC
195 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
21274 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
260 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * *
21339 -ATTTTACGGTTC-GAGATTTTTTTAAAATGTTTTCAGAAGGAGTTTTGGCTCCAAACTTGGTAG
325 CTTTTTACGGTTCAG-GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
21402 ACATGATCCTTGTATTTTTGTTGGCATGGACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAGG
389 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGG
* *
21467 ATTTAGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
454 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
21532 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
519 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * * *
21597 AATATAAGGG-CAGAGTACCAGCACCCACCCCACATCATGTGCGTACACCCGCCTG-TCCCCAAT
584 AATATAAGGGCCA-AGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCGCCCCCCAAT
*
21660 CGTCGGAACCCCAATGTCGTCGGTCAGG---T-------T-CTCCGGCGATGGTGCCCCGGGTGA
647 CGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGGTGA
* * * * * * *
21714 AAAAAAATGCAGCACCAGGACATGCACGAGCCCAGCATGTGCACCCACAGCCCTAGATCTGGTCC
712 AAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCC
* * * *
21779 AATATTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAA
777 GATCTTACACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * **
21844 CACATGAAATGAGCGTACGAGCGCTCAACCGACCAGAGGGGCACCAT-CGCAAG
842 CCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAG
** * * * *** *
21897 CCGGGGATCGAACGGGTCCCCCCATACATGCTGTCGATCCTACTACTGGAACCCTCAGTCTGGTG
1 CCGGGGATCGGCCGGGTCCCCCC-TACGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCTGGTC
* *
21962 TGATCTTAGACTT-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCAG
65 TGATCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* * **
22026 GCACTACGCCGGCCAGAGAGGTGGGATGCGCAAGCCATGGATCGATAGATTGGTAGGTGGGTTTA
129 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
22091 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
194 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
22156 CCTTAAGCCTTCATGTGAAGTTTCATGGCTAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
259 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* * **
22221 ACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAAAAGGACTTTTGGCTGCAAACTTGGTAG
324 ACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
22286 AGGTGATCCTTGTACTTTTT-CTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAT
389 ACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAG
* *
22350 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCGGTAAAC
453 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
22415 CTATAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGC
518 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
22480 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGTCCCCCAAT
583 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGCCCCCCAAT
* * ** * * * *
22545 CGCCGGAACCCCAATGCCATCGGTCA-GTTCTCCGACAATACTCCGGAGATGGTGCCCCGGGTGA
647 CGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGGTGA
** * * * * *
22609 AAAAAAATGTAGCACCAGCACATGCCCGAGCCTAGCATGAGAACCCGCAACCCTCGATCTAGTCC
712 AAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCC
* * * * *
22674 GATCTTACACTGGCAATGAAC-TCTGTATGCTTAGATTGGGAATGAACTTCGTACGCCTAAGTCA
777 GATCTTACACTGGGAATGAACTTC-GTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
* * *
22738 ACCCACGAAATGAGCGTGCGGGCGCTTAGCCGGCCAGAGGTGCAGGATGCGTAAG
841 ACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAG
* ** ** * * *
22793 CCAGGGATCGGTTGGGT-CCCCCTGGGTGTTG-CTGATCTTGCTGCCACAACCCTCGGTCTGGTC
1 CCGGGGATCGGCCGGGTCCCCCCTACGTGCTGTC-GATCCTGCTGCCACAACCCTCAGTCTGGTC
* *
22856 TAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
65 TGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * * * * * *
22921 CACTGCGTCGGCCACAGAGACGGGTTGCGCAAGCTGTGGATCTATAGGGTGGTAGGTGGGTTTAG
130 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* ***
22986 GCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACAATCC
195 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
23051 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTAATGATTTTTGAAA
260 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * * ** *
23116 CTTTTTACGG-TCCGAGATTTTTTTAAAATTTTTTCAAAAAGAGTTTTGGCCCCAAACTTTATAT
325 CTTTTTACGGTTCAG-GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * * *
23180 ACATGATCCTTATATTTTTGTTGGCATGCACCAAAAAATTCAGCTAAACACTTAAAGTGTACAGG
389 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGG
* *
23245 ATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTCTAGACACTTTAAAGGCTATTGGCAGCAAAC
454 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAAC
* *
23309 CTGTAAGATCTCAAATGCTCTTTAAGGGGGTGAGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
518 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
23374 CAATATAAGGGCCAAGCACCAGCACCCATCGTACGTCATGTGCGTACACCCCCCGCCCCCCTAAT
583 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCC-AAT
* * * **
23439 CGTCGGAACCCAAATGTCGCCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGGGCAA
647 CGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGGTGA
* * * *
23504 AAAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCACTCGCAACCCTCGGTCCGGTCC
712 AAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCC
* * * * *
23569 GATCTTACACTGGGAATGAACTTCATATGTTTAGACTGGGAATGAACTCTGTATGCCTAAGTTAA
777 GATCTTACACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * *
23634 CCAATGAAACGAGCGTGCGGGCACTCAGCCGGCTAGAGGGGCAGGATGCACAAG
842 CCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAG
* ** * **
23688 CTGGGGATCGGCCGACTCCCCCCTACGTGCTGTCGATCCTGCTGCTACAACCCTCAGAATGGTCT
1 CCGGGGATCGGCCGGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCTGGTCT
* * *
23753 GATCTTAGATTGGGAATGAACTCCGTATGCCCAAGCCAATCGACGAAATGAGCGGGCGGGCGGGC
66 GATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
** ** *
23818 GTTACGCAAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGTTGGTAGGTGGGTTTAGG
131 ACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
23883 CACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGT-AATTCATACAATGGTCCC
196 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
23947 TTAAGCCTTCATGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAT
261 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
*
24012 TTTTTACGGTTCAGGATTTTTTTTAAATTTTTTCAGAAGGAGTTTTGG-CCCAACACTTGGTAGA
326 TTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA-ACTTGGTAGA
* * * *
24076 CGTGATCCTTGTATATTTGTTGTCATGCACAAAAAAATTCAGCTAAAAAATCAAAGTGTACAAGA
390 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGA
* * *
24141 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAGTGGCTACTGGCAGTAAACCT
455 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
24206 ATAAAATCTCAAATCCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
520 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
24271 ATATAAGGGCCAAGTACTAGCACCCATCGCACACATCATGTGCGAACACCCCCCGCCCCCCCAAT
585 ATATAAGGGCCAAGTACCAGCACCCATCG--CACATCATGTGCGCACACCCCCCG-CCCCCCAAT
* * *
24336 CGTCAGAACCCCAATGCCGCCGGTCAGGTTCT-C--C-A-------GCGATGGTG-CCCTGG-G-
647 CGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGGTGA
* * *
24387 -------TGCGCCACCAGCACATGCCTGAGCCCAGCATGTGCACCCACAACCCTCGGTCTGGTCC
712 AAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCC
* * * ** *
24445 GATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGACCTCTATATGCCTAACTCAA
777 GATCTTACACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA
** * * * * *
24510 CCCACGAAACAAACGTGCGGGCGCTCAGCCGACCAGAGGTGCAAGATGCGTAAG
842 CCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAG
* ** * * * * *** * * *
24564 CCGGGGATCAGCCACGTCCCCCCTGCATGCTGTCGATGCTACTGTTGCAACCCTCGGTTTGGTCC
1 CCGGGGATCGGCCGGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCTGGTCT
* * * * *
24629 GATCTTAGAGTGGG-ATAGAACTCCATATGCCAAAGCCAACCGATGAAATGA-----------GG
66 GATCTTAGATTGGGAAT-GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * **
24682 ----A----GG-C------GCGAGATGCGCAAGCCGTGGATTGATTTGGTGGTAGGTGGGTTTAG
130 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
24732 GCACATCTTCATATTTCTACCATGCCAATGCCAGTTTTATGGCTTGTAAATTCATACAATGGTCC
195 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* **
24797 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATATTCAAAA
260 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* *
24862 CTTTTTACGGTTC-GAGATTTTTTTAAAATTTTTTCAGAAGAAGTTTTGGCCCCACACTTGGTAG
325 CTTTTTACGGTTCAG-GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
** * * * * **
24926 ACGTGATCCTTGTATTTTTGTTCACTTGCACCAAACAATTTAGCTAAAAACTTGAAGTGTACAGG
389 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGG
** *
24991 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTGGCAAAGC
454 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
25056 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
519 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * *
25121 AATATAAGGGCCAAGTTCCAGCACCCGTCGCACATCATGTGCGCACACCCCCC-CACCCCTAATT
584 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGC-CCCCCAATC
* * * * * *
25185 GTCAGAACGCCAATGCCGTCGGTCAGGTTCT-C--CG--G-T-----GATGGTACCCCGGGCGAA
648 GTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGGTGAA
* * * *
25239 AAAAAATGCGGCACCAGCACATGCCCGAGCTCAGCATGTGCACCCACAACCCTCGGTCCGGTCCA
713 AAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCG
* * *
25304 ATCTTACACTGGGAATGAAC-TCTATATGCTTAGACTGGGAATCAACTCCGTATGCCTAAGTCAA
778 ATCTTACACTGGGAATGAACTTC-GTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA
* * * **
25368 CCCACGAAATGAGTGTGCGGGCGCTCAACCGGCCAGAGGGGCAAGATGCGTGAG
842 CCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAG
** * * ** * *
25422 TTGAGGATCGGTCGGGTCCCCCCTA-GTGTTCTACCAATCCTGCTACCACAACCCTCAGTCTGGT
1 CCGGGGATCGGCCGGGTCCCCCCTACGTG--CTGTCGATCCTGCTGCCACAACCCTCAGTCTGGT
* * *
25486 CTGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGAGCGG
64 CTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* *
25551 GCACTACGCCGGCCAGAGAGGCGGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTA
129 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
25616 GGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
194 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
25681 CCTTAAGCCTTCATGTGACGTTTCAAGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTCAA
259 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* * * * * *
25745 ACCATTTTACGATTC-GAGATTTTTTTAAAATTTTTTTAGAAGGATTTTTGGCCCCACACTAGGT
324 A-CTTTTTACGGTTCAG-GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
25809 AGATGTGATCTTTGTATTTTTTTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
387 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
*
25874 GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTGCTGGCAGCAAA
452 GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * * *
25939 CCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTTTGGAGGTTTGATAAGGGATAAGGGG
517 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
26004 CCAATATAAGGGCCAAGTACCCA-CACCCATCGCACATCATGTGCGCACACCCCCCCCCGCCCCC
582 CCAATATAAGGGCCAAGTA-CCAGCACCCATCGCACATCATGTGCGCACA---CCCCCCGCCCCC
* * * * * * *
26068 CAATCGCCGAAACCCCAATGCCGTCGGTCAAGTTCTCCGACGATGCTCCGGCGATGGTGCCCCAG
643 CAATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGG
* ** * *
26133 GTGAAAAAAAATGCAGCA-CAGCACATGTTCGAGCCTAGCATGTGCACCCGCAACCCTTGGTCTG
708 GTGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTG
* *
26197 GTCCGATCATACACTGGGAATGAA-TTGCGTATGCTTAGACTAGGAATGAACTCCGTATGCGTAA
773 GTCCGATCTTACACTGGGAATGAACTT-CGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAA
* * * *
26261 GTCAACACACGAAACGAGCATGCGGGCGCTCAGCTGGCCAGA-GGGCAGGATGCGCAAG
837 GTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAG
* * * * ** *
26319 TCGGGGATCGACCGGGTCCCCCCCTGCGTGCTG-CTGATCCTGCTGCCATAACCCTTGGTC-AGT
1 CCGGGGATCGGCCGGGT-CCCCCCTACGTGCTGTC-GATCCTGCTGCCACAACCCTCAGTCTGGT
* * * *
26382 CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCGACCGACGAAACGAGCGGGCGGGGGG
64 CTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* * *
26447 GCATTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCCTGGATCGATAGGGTGGTAGGTTGGTTTA
129 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
26512 GGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
194 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
26577 CCTTAAGCCTTCATGCGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCAGGATTTTCGAA
259 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* * ***
26642 ACTTTTTACGGTTCGGGATTTTTTTAAAAATTTTTCAGAAGGAGTTTTGGAAGCAAACTTGGTAG
324 ACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
26707 ACGTGATCCTTGTATTTTTTTTGGCATGTACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
389 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGG
* *
26772 ATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACATTAATGGCTACTGGCAGCAAACC
454 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
26837 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
519 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
26902 AATAGAAGGGCCAAGTACCAGCACCCATCGCGCATCATGTGTGCACACCCCCC-CGCCCCCAATC
584 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGC-CCCCCAATC
** * * * * *
26966 ACCGGAACCCCAATG-CTGTCGGTCAAGTTCTCCGGCGATGCTCCGACGATGGTGCCCTGGGAG-
648 GTCGGAACCCCAATGTC-GCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGGTGA
* **
27029 AAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACTTGCAA-CC-C--TC--G---
712 AAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCC
* *
27085 G----T-C-C--GG--T---C--CG-AT-CTTACACTAGGAATGAACTCCGTACGCCTAAGTCAA
777 GATCTTACACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA
* * *
27133 CTCACGAAATGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAG
842 CCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAG
* * * * * ** * *
27187 CCGGGGATCGACTGGGTCCCCCCTGCATGCTATCGATCCTGCTGCTGCAACCCTCAAT-TCGATC
1 CCGGGGATCGGCCGGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCT-GGTC
* * * *
27251 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACAAAACGAGCAGGCGGGCGGG
65 TGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * *
27316 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAA
130 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
27381 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
195 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * **
27446 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAA
260 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * * * *
27511 CTTTTTACGGTTCAGGATTTTTTTCAAATATTTTCAGAAGGAGTTTCGGCCCCAAACGTGGTAGT
325 CTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * * * * ** *
27576 CATGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTTACCTAAAAAATCGTAGTTTACAGGA
390 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGA
* * *
27641 CTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACAGGCAGTAAACC
455 TTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
27706 TGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
519 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
27771 AATATAAGGG-CAAGTACCAGCACCCA
584 AATATAAGGGCCAAGTACCAGCACCCA
27797 CCCACGTGCC
Statistics
Matches: 6732, Mismatches: 806, Indels: 298
0.86 0.10 0.04
Matches are distributed among these distances:
847 1 0.00
848 44 0.01
849 27 0.00
850 89 0.01
851 333 0.05
852 4 0.00
856 1 0.00
857 4 0.00
858 172 0.03
859 66 0.01
860 2 0.00
861 1 0.00
865 2 0.00
867 96 0.01
868 417 0.06
869 121 0.02
870 2 0.00
874 2 0.00
875 2 0.00
876 247 0.04
878 3 0.00
879 2 0.00
880 1 0.00
882 6 0.00
883 295 0.04
884 483 0.07
885 1010 0.15
886 45 0.01
887 4 0.00
888 42 0.01
889 6 0.00
891 2 0.00
892 18 0.00
893 127 0.02
894 559 0.08
895 936 0.14
896 1015 0.15
897 370 0.05
898 144 0.02
899 31 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
CCGGGGATCGGCCGGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCTGGTCT
GATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
ACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
TTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGTC
GGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGGTGAAAAA
AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATC
TTACACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCA
CGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAG
Found at i:24499 original size:26 final size:26
Alignment explanation
Indices: 24448--24500 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24438 CTGGTCCGAT
*
24448 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
* * *
24474 CTTAGACTGGGAATGACCTCTATATG
1 CTTACACTGGGAATGAACTCCATATG
24500 C
1 C
24501 CTAACTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:25357 original size:26 final size:26
Alignment explanation
Indices: 25306--25358 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25296 CCGGTCCAAT
* *
25306 CTTACACTGGGAATGAACTCTATATG
1 CTTACACTGGGAATCAACTCCATATG
* *
25332 CTTAGACTGGGAATCAACTCCGTATG
1 CTTACACTGGGAATCAACTCCATATG
25358 C
1 C
25359 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATCAACTCCATATG
Found at i:27885 original size:26 final size:26
Alignment explanation
Indices: 27849--27899 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
27839 CTGATCTGAT
27849 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
27875 CTTAGACTGGGAATGAACTCTGTAT
1 CTTACACTGGGAATGAACTCCGTAT
27900 CCCAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:32357 original size:26 final size:26
Alignment explanation
Indices: 32321--32373 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32311 CCAGTCCGAT
*
32321 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
32347 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
32373 C
1 C
32374 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:33249 original size:26 final size:26
Alignment explanation
Indices: 33215--33293 Score: 95
Period size: 26 Copynumber: 3.0 Consensus size: 26
33205 CCGGTCTGAT
*
33215 CTTACACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
33241 GTTAGACTGGGAATGAACTCTGTGTG
1 CTTAGACTGGGAATGAACTCCGTATG
** *
33267 CTTAGACTAAGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33293 C
1 C
33294 CTAAGTCAAC
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34127 original size:920 final size:884
Alignment explanation
Indices: 31604--34195 Score: 3370
Period size: 920 Copynumber: 2.9 Consensus size: 884
31594 TCGATTTGGT
*
31604 TTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA-CTGGGCGGGCG
1 TTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGGCGGGCG
31668 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTT
65 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTT
* * * *
31733 AGGTACATCTTCATATTTCTTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACCATGGT
130 AGGCACATCTTCATATTTCTACCATGCCAATGCTATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
31798 CCCTTAAGCCATCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTCTCACAATTTTTGA
195 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
*
31863 AA-TTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
260 AACTTTTTACGATTCA-GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
31927 GACGTGATCCTTGTATTTTTGTTGGCACGCACAAAAACATTCCAGCTAAAAACTCGAAAAATGTA
324 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT-CAGCTAAAAACTC--AAAGTGTA
*
31992 TAGGA-TTTGTGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
386 CAGGATTTTGT-GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
32056 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTTCAGGTTTGATAAGGGATAGG
450 AAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTC-TCAGGTTTGATGAGGGATAGG
* *
32121 GGGCCAATATAAGGGCCAAATACCAACACCCATCGCACATCATGTGCGCACACCCCTCACCCCCC
513 GGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGTGCAC-CCCC-C-CCCCCC
* ** *
32186 CAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC-TCTGGTGATGCT-TCGGCGATGGTGCCCC
575 CAATCTCCGGAACCCCAATGCCGTCGGTCAGGTTCTTC-GACGATGCTCT-GACGATGGTG-CCC
*
32249 AGGCGAAAAAAATGCAGCACCAGCAATGCCCGAGCCTAGCATGTGCACCCACAACCC--TCGGTC
637 AGGCGAAAAAAATGCAGCACCAGCAATGCCTGAGCCTAGCATGTGCA-CC-CAACCCTTTCGGTC
32312 CAGTCCGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
700 C-GT-CGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * **
32377 AGTCAACCCAAGAAATGAGAGTGCGGCCGCTCAGCTGGCCAGAGGGGCAGGATGCGAAAGCCAGG
763 AGTCAACCCAAGAAACGAAAGAGCGGCCGCTCAGCCAGCCAGAGGGGCAGGATGCGAAAGCCAGG
** * * * * * *
32442 GATCGGTCGGGTCCCCCCTACGTGCTATCGATCCTGCTACCGCAACCCTTGGTCTGG
828 GATCAATCGGGTCCCCCCTACGTGCTACCGATCCTACTACCACAACCCTCGGTCCGA
* *
32499 TTCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
1 TT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
* * * * * *
32564 GGCACTACGCAGGCCAGAGAGGCGGGATACACAAGCCGTGCATCGATAGGGTGGTAGGTGGGTTT
65 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTT
* * *
32629 -GGCACATCTTCATATTTCTACCGTGCCAATTCCT-TTTTTATGGCTTGTAAACTCATACAATGG
130 AGGCACATCTTCATATTTCTACCATGCCAA-TGCTATTTTTATGGCTTGTAAATTCATACAATGG
* * *
32692 TCCCTTAAGTCTTCATGTTAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTG
194 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * *
32757 AAACCTTTTACGATTCGGGATTTTTTTAAAATTTTTTCAGAAGCAGTTTTAGACCTC-AACTTGG
259 AAACTTTTTACGATTC-AGATTTTTTTAAAATTTTTTCAGAAGGAGTTTT-GGCCCCAAACTTGG
* * * *
32821 TAGACGTGATCCTTGTATTTTTGATGGCATGCACAAAAGAATTTAGCTAAAAACTCTAAGTGTAC
322 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
* * *
32886 AGGATTTCGGGACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
387 AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
32951 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTAGATGAGGGATAGGGGG
452 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTC-AGGTTTGATGAGGGATAGGGGG
** *
33016 CCAATATAAGGGCCAAGTACCAGTACCCATCACACATCATGTGTGCACATCCCCCCCACCCCCCC
516 CCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGTG--CA--CCCCCC-CCCCCCC
* * * *
33081 AATCGT-CGGAACCCGAATGCCATCGGTCAGGTTCTTCGACGATGCTCCGACGATGGTGCCCCGA
576 AATC-TCCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCTGACGATGGTGCCCAG-
* * * * ** **
33145 G-GAAAAAAATACGGCACCAGTAGATGCCTGAGCCCAGGTTGTGCACCC-ACAATTATCGGTCCG
639 GCGAAAAAAATGCAGCACCAGCA-ATGCCTGAGCCTAGCATGTGCACCCAACCCTT-TCGGTCC-
* * * *
33208 GTCTGATCTTACACTGGGAATGAACTCCGTATGGTTAGACTGGGAATGAACTCTGTGTGCTTAGA
701 GTC-GATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGC-----
* ** *
33273 CTAAGAATGAACACCGTATGCCTAAGTCAACCTACGAAACGAGCGTATGAGTGCTCAGCCATCCA
760 CTAAG--T---CA----A--CCCAAG--AA---ACGAAA-GAGCG---G-CCGCTCAGCCAGCCA
* * * *
33338 GAGGGGCAGGATGCGTAAGCC-GAGGATCAATTGGGT-CCCCCTGCGTGCTACCGATCCTACTGC
804 GAGGGGCAGGATGCGAAAGCCAG-GGATCAATCGGGTCCCCCCTACGTGCTACCGATCCTACTAC
33401 CACAACCCTCGGTCCGA
868 CACAACCCTCGGTCCGA
* * * *
33418 TCTGATCTTAAACTGGGAATGAAATCTGTATGCCTAAGCTAACCGACGAAACGAGCGGGCGGGCG
1 T-TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
* *
33483 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCATGGATTGATAGGGTGGTAGGTGGGTTT
65 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTT
*
33548 AGGCACATCTTCATATTTCTGCCATGCCAATGCTATTTTTATGGCTTGTAAATTCATACAATGGT
130 AGGCACATCTTCATATTTCTACCATGCCAATGCTATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
33613 CCCTTAAGCCTTCATGTGAGGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTTTA
195 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* *
33678 AACTTTTTACGATTCAGAATTTTTTAAAATTTTTTTCAGAAGGTGTTTTGGCCCCAAACTTGGTA
260 AACTTTTTACGATTCAGATTTTTTTAAAA-TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
33743 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAG
324 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAG
*
33808 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAAC
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * * *
33873 CTAT-AAATCTAAAATGCTCTTTAAGAGTGTGTGAGTTCTCAAGGTTTGATGAGTGATAGAGGGC
454 CTGTAAAATCTCAAATGCTCTTTAAG-GGGTGTGAGTTCTC-AGGTTTGATGAGGGATAGGGGGC
33937 CAATATAAGGGCCAAGTA-CAACACCCA-CGCACATCATGTGTGCACCCCCCCGCCCCCCAATCT
517 CAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGTGCACCCCCCC-CCCCCCAATCT
* * * * *
34000 CCGGAACCCCAAAGTCGGCGGTCAGTTTCTTCGACGATGCTCTGATGATGGTGCCCTAGGCGAAA
581 CCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCTGACGATGGTGCCC-AGGCGAAA
34065 AAAATGCAGCACCAGCACATGCCTGAGCCTAGCATGTGCACTCGCAACCC-TT-GGTCCGGTCCG
645 AAAATGCAGCACCAGCA-ATGCCTGAGCCTAGCATGTGCAC-C-CAACCCTTTCGGTCC-GT-CG
*
34128 ATCTTACACTGGGAATTAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
705 ATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
34193 CCA
770 CCA
34196 CAAAATGAGC
Statistics
Matches: 1471, Mismatches: 164, Indels: 120
0.84 0.09 0.07
Matches are distributed among these distances:
891 4 0.00
892 73 0.05
893 116 0.08
894 140 0.10
895 135 0.09
896 206 0.14
897 5 0.00
899 8 0.01
901 2 0.00
904 2 0.00
905 2 0.00
908 2 0.00
910 10 0.01
912 2 0.00
913 2 0.00
914 64 0.04
915 102 0.07
916 9 0.01
917 2 0.00
918 16 0.01
919 198 0.13
920 371 0.25
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (884 bp):
TTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTACCATGCCAATGCTATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
ACTTTTTACGATTCAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGTGCACCCCCCCCCCCCCAATCTCCGGA
ACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCTGACGATGGTGCCCAGGCGAAAAAAATG
CAGCACCAGCAATGCCTGAGCCTAGCATGTGCACCCAACCCTTTCGGTCCGTCGATCTTACACTG
GGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGA
AAGAGCGGCCGCTCAGCCAGCCAGAGGGGCAGGATGCGAAAGCCAGGGATCAATCGGGTCCCCCC
TACGTGCTACCGATCCTACTACCACAACCCTCGGTCCGA
Found at i:34166 original size:26 final size:26
Alignment explanation
Indices: 34130--34182 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34120 CCGGTCCGAT
* *
34130 CTTACACTGGGAATTAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
34156 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
34182 C
1 C
34183 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:36166 original size:26 final size:26
Alignment explanation
Indices: 36130--36182 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
36120 CTGATCCGAT
36130 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTTCGTATG
*
36156 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTTCGTATG
36182 C
1 C
36183 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTTCGTATG
Found at i:37067 original size:26 final size:26
Alignment explanation
Indices: 37031--37083 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
37021 CTGGTTTGAT
37031 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
37057 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
37083 C
1 C
37084 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:37390 original size:903 final size:897
Alignment explanation
Indices: 35476--37666 Score: 3010
Period size: 903 Copynumber: 2.4 Consensus size: 897
35466 GTATGCCTAA
35476 GCCAGAGGAGGCGGGATTGGCGCAAGCCTGTGGATTCGGATA-GGTGGTAGGGTTGGG-TTA-GC
1 GCCAGA-GA-GCGGGA-T-GCGCAAGCC-GTGGA-TC-GATAGGGTGGTA-GG-TGGGTTTAGGC
* * *
35538 GCATCTTCATCTTTCTACCGAATGCCAATGCCA-TTTTATGGCTTGTAAATTCATTACAATGGTC
57 ACATCTTCA--TTTCTGCC--ATGCCAATGCCATTTTTATGGCTTGTAAATTCA-TAAAATGGTC
* *
35602 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATCTTTCATGATTTTTGAA
117 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
** * *
35667 ACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTTAGAAGGAATTTTGGCCCCAAACTTGGTAG
182 ACTTTTTACGGTTCAAGATTTTTTAAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACATGGTAG
* *
35732 ACATGATCCTCGTAGTTTTTTTGGCATGCACAACAAAATTCAGCTAAAAACTCAAAGTGTACTA-
247 ACATGATCCTTGTATTTTTTTTGGCATGCACAA-AAAATTCAGCTAAAAACTCAAAGTGTAC-AG
35796 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
310 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
35861 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTAGATGAGGGATAGGAGGC
375 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
** * * * * *
35926 TGATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGAGCACACCGCCCCCCCCGCCCCC
440 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAAC-ACCCCCCCGCCCCC
*
35991 CCAATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTTCC-ACGATGGTGCCCC
504 CCAATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC-TCCGACGATGGTGCCCC
*** * * * *
36055 GAGCACAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCACTCACAACCTTCGGT
568 -AGGTGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGT
* *
36120 CTGATCCGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTCGTATGCCT
632 CTGATCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCT
* * * * * *
36185 AAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCAGCTAGTGGCACGGGATGTGCAAGCTAG
697 AAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGCACAGGATGCGCAAGCTAA
** ** * *
36250 GGATC-AGTCGGGTCCCCCCCTGTGTGTTGCCAATCCTGCTACCACAACCCTCGGTTTGATCCAA
762 GGATCGA-TCGGGTCCCCCCCTGCATGTTGCTGATCCTGCTACCACAACCCTCAGTTTGATCCGA
* *
36314 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGACGGGCGGGCAC
826 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAC
*
36379 TATGTCG
891 TACGTCG
*
36386 ACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAG-CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
36451 ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAAATGGT-CCTTAAGCCT
65 --ATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT-AAAATGGTCCCTTAAGCCT
36515 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
127 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
* * *
36580 GTTCAAGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACATGGTAGTCGTGATCCT
192 GTTCAAGATTTTTTAAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACATGGTAGACATGATCCT
*
36645 TGTATTTTTTTTGGCATGCACAAAAGAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGAC
257 TGTATTTTTTTTGGCATGCACAAAA-AATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGAC
*
36710 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCT
321 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
36775 CAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGG
386 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
*
36839 CCAAGTACCAGCACCCATCACACATCATGTGCGCACAACACCCCCCCGCCCCTCCCAATCATCAG
451 CCAAGTACCAGCACCCATCACACATCATGTGCGCACAACACCCCCCCGCCCC-CCCAATCGTCAG
* * *
36904 AACCCCAATGCTGCCGGTCAGGTTCTCCGGCAATGCTCCGGCGATGGTGCCCCAGGTGAAAAAAA
515 AACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAGGTGAAAAAAA
* * * * *
36969 ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAGCCCTCAGTCTGGTTTGATCTT
580 ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCTGATCTGATCTT
*
37034 ACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACG
645 ACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATG
* * * **
37099 AAATGAGTGTGCGGGCACTCAACCGGCCAGAGGCACAGGATGCGCAAGCTGGGGATCGATCGGGT
710 AAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGCACAGGATGCGCAAGCTAAGGATCGATCGGGT
* * * ** * *
37164 -CCCCCCTACATGTTGCTGATCTTGCTGCGGCAACCCTCAGTTTGATCTGATCTTAGACTAGGAA
775 CCCCCCCTGCATGTTGCTGATCCTGCTACCACAACCCTCAGTTTGATCCGATCTTAGACTGGGAA
** * **
37228 TGAACTTTGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCAAGCACTACGTCG
840 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTCG
* *
37286 GCCAGAGATGCGGGACGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTT
1 GCCAGAGA-GCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC-TT
* *
37351 CGGTTTCTGGCCATGGCCAATGCCATTTTTATGGGCTTGTATAATTCATAAAATGGTCCCTTCAG
64 C-ATTTCT-GCCAT-GCCAATGCCATTTTTAT-GGCTTGTA-AATTCATAAAATGGTCCCTTAAG
* ** **
37416 CCTTTATGGTGAAGTTTCATGGTGAGACGACTATTTTTCTATTTTTACATGATTTTTGAAAACTT
124 CCTTCAT-GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT-CATGATTTTTG-AAAC-T
** * *
37481 TTTTACGGTTCAAGGATTTTTT-AAAA-TTTTTTAGAAGTTGTTTTGGCCCCTAAACAAGGTAGT
185 TTTTACGGTTCAA-GATTTTTTAAAAATTTTTTTAGAAGGAGTTTTGGCCCC-AAACATGGTAGA
*
37544 CATGATCCCTTGTTATTTTTGGGTTGGC---CACAAAATAATTCAGCTAAAAACTCAAAGTGTAC
248 CATGAT-CCTTG-TATTTTT--TTTGGCATGCACAAAA-AATTCAGCTAAAAACTCAAAGTGTAC
37606 AGGATTTTGTGAACCGATTTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGG
308 AGGATTTTGTG-ACC-A-TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
37667 TAG
Statistics
Matches: 1153, Mismatches: 95, Indels: 65
0.88 0.07 0.05
Matches are distributed among these distances:
900 163 0.14
901 205 0.18
902 157 0.14
903 299 0.26
904 55 0.05
905 59 0.05
906 16 0.01
907 36 0.03
908 36 0.03
909 63 0.05
910 15 0.01
911 30 0.03
912 19 0.02
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (897 bp):
GCCAGAGAGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCAT
GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
AAGATTTTTTAAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACATGGTAGACATGATCCTTGTA
TTTTTTTTGGCATGCACAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTT
GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
TACCAGCACCCATCACACATCATGTGCGCACAACACCCCCCCGCCCCCCCAATCGTCAGAACCCC
AATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAGGTGAAAAAAAATACGG
CACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCTGATCTGATCTTACACTG
GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGA
GCGTGCGGGCGCTCAACCGGCCAGAGGCACAGGATGCGCAAGCTAAGGATCGATCGGGTCCCCCC
CTGCATGTTGCTGATCCTGCTACCACAACCCTCAGTTTGATCCGATCTTAGACTGGGAATGAACT
CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTCG
Done.