Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 102 of 190
Found at i:16053035 original size:898 final size:897
Alignment explanation
Indices: 16047318--16056244 Score: 10897
Period size: 888 Copynumber: 10.0 Consensus size: 897
16047308 TGCTGCCGTG
* * * ** * *
16047318 ACCCTCGGTCTGGTCCGATCTTACACAAGGAATGAACTTCGTATGCCTAAGCCAACTGACGAAAC
1 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * * ** *
16047383 GAGCGGGTGGGCAGGCAGGCAGGCACTACGCCGATCAGAGAGACAGGATGCGCAAGCCGTGGATC
66 GAGC--G-GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
*
16047448 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
128 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
*
16047513 TTGTAAATCCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
193 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * * * * * *
16047578 CTATTTTTTAAGATTTTTGAAACTGTTTGCGGTTCAGGATTTTTTAAATTTTTTTTCGGAAGGAG
258 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA-ATTTTTTCGAAAGGTG
* * *
16047643 TTTTGGTCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGGAC-AAAAAATTCAGC
322 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
* * *
16047707 TAAAAACTCGAAGTGTACAAGATTTTTGTGACCATTTGAAAAACGTGTCCCCATCTTAAGACACT
387 TAAAAACTAGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCAT-TTCAGACACT
* *
16047772 TTAATGGCTACTGGTAACGCAAACCTGTAAAATTCTCAAATGCTCTTTTAAGGGCGTGTGAGTTC
450 TTAATGGCTACTGG-CA-GCAAACCTGTAAAA-TCTCAAATGCTC-TTTAAGGGGGTGTGAGTTC
* *
16047837 TCGAGGTTTTGATGA-GGATAGGGGG-CAATATAAGGGCCAAGTACCAGCACCTATCTCACATCA
511 TCGAGG-TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
16047900 TGTGCGTAAGACCCTCCCCACCGACCCCCCACGATCGACGGAACCCCAATGCC-ACGGTCAGGTT
575 TGTGC-T--CACAC-CCCC-CCGGCCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * ** *
16047964 CTCCGG-GCAATGCTCCGGTGATGGTGCTCCGGTGAAGAAAAATGCGGCACCAATACATGCCCAA
634 CTCCGGTG--ATGCTCCGGCGATGGTGC-CCGGCGAAGAAAAATGCGGCACCAGCACATG-CCGA
* * * * *
16048028 GCCCAGCATGTGCT------A--C-C-G--CAT--G--CTTAGACTGGGACTAAACTTCATATGC
695 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGTCCGATCTTAGACT-GGAATGAACTCCGTATGC
* * * ** *
16048077 TTAAACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTATGGGTGCTCAGCC
759 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * **
16048142 GGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTACCGATCCT
824 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCT
* *
16048207 GCTACCACA
889 ACTGCCACA
* * * * *
16048216 ACCCTCAGTCCTGTCTGATCTTAGACTTGGAATAAACTTCC-TATGCCTAAGCCAACCGATGAAA
1 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC-TCCGTATGCCTAAGCCAACCGACGAAA
* * *
16048280 CGAGCGGGCAGGCGAGCAGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
65 CGAGC-GG--GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
*
16048345 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATACCATTTTTATGG
127 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
* *
16048410 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGATGACTCGTTT
192 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* *
16048475 TCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-AGAAGGA
257 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGT
* * * *
16048539 GTTTTGGCCCTAAACTTGGTAGGCTTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAG
321 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
* *
16048603 CTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCTATTTCAGACACTT
386 CTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * *
16048668 TAATGGCTACAGGCAACAAACTTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTCTCGAG
451 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * * * *
16048733 GTTTGATGAAGGATAGGGGGCCAGTATAAGGGCCAAGTACCAGCACCTATCCCACAGCATGTGCG
516 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-
** * ** * * * * **
16048798 T-ACACCCTGCCGACCCCCCCGATCACCGAAATCCAAATGCCGTCGGTCAGGTTCTCCGACGATG
580 TCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATG
* * * *
16048862 CTCCGACGATGGTGCTCCGGCAAAGAAAAATGCGGCACGAACACATGCCTGAGCCCAGCATGTGC
645 CTCCGGCGATGGTGC-CCGGCGAAGAAAAATGCGGCACCAGCACATGCC-GAGCCCAGCATGTGC
* * *
16048927 TGCCGCAACCCTCGGTCCGATTCGATCTTAAACTGGGAATGAACTCCGTATGCTTAGATTGGGAA
708 TGCCGCAACCCTCGGTCCG-TCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAA
* ** * *
16048992 TGAACTCCGTATTCCTAAGTCAACCCACGAAACGAGCGTATGGGTGCTCAACCGGCCAGAGGGGC
771 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * *
16049057 GGGATGCGCAA-CTCGGGGATCGGCCGGGTCCTCCTCTGCATGCTGTCGATCCTACTGCCGCA
836 GGGATGCGCAAGC-CGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTACTGCCACA
* * * *
16049119 ACCTTCAGTCCGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCGACG-AA
1 ACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * *
16049182 --A------CGGGCGGACGGGCACTACGTCGGCCAAAGAGACGGGATACGCAAGCTGTGGATCGA
65 CGAGCGGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * *
16049239 TAGTGTGGTACGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGACTT
130 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTT
* *
16049304 GTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCT
195 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * * **
16049369 ATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGAAGTTT
260 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGTGTTT
* * * *
16049434 TGGACCCAAACATGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCGGCTAA
325 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
* *
16049499 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCCTTTCAGACACTTTAAT
390 AAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
16049564 GGCTACTGGCGGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
455 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
16049629 GATGAGGGGTAGGGGGCCAATAT-AGGGGCAAGTACCAGCATCCATCGCACATCATGTG--CACA
520 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCTCACA
* * * **
16049691 CCCCCCCGGCCCCCCCGATCGTCGAAACCCTAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCG
585 CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCG
* * * * *
16049756 GCGATGGTGCCCTGGTGAAGAAAAATGCGACACCAGTAGATGCCCGAGCCCAGCATGTGCTGTCG
650 GCGATGGTGCCC-GGCGAAGAAAAATGCGGCACCAGCACATG-CCGAGCCCAGCATGTGCTGCCG
* *
16049821 CAACCCTTGGTCCGATCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
713 CAACCCTCGGTCCG-TCCGATCTTAGACTG-GAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* *
16049886 TCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCGGGAT
776 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * ** ** * *
16049951 ACGTAAGCCGACGATC-GTCCGGGTCCCCCTCTGTGTGCTATCGACCCTACTGCCACA
841 GCGCAAGCCGGGGATCGGT-CGGGTCCCCCTCTGCATGCTGTCGATCCTACTGCCACA
* * ** *
16050008 ACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAT
1 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * *
16050073 GAGC-GGGAGGGCGGGCGGGCACTACGCCTGCCAGAGAGACGGGATACGCAAGCCGTGGATCGAT
66 GAGCGGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * *
16050137 AGGCTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTCCATGCCAATGCCATTTTTATGGCTTG
131 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTG
* * *
16050202 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGTAAGACAACTCGTTTTCTA
196 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * * *
16050267 TTTTTCATAATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAT-TTT
261 TTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGG-TGTTT
**** * * *
16050331 TCATGCCAAAC-TGGTAGATGTGATCGTTGTATTTTTTTTGGCATTCACAAAAAAATTCAGCTAA
325 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
*
16050395 AAACTTA-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAA
390 AAAC-TAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
16050459 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAA-GGGGTGTGAGTTCTTGAGGTT
454 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
16050523 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-CAC
519 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCTCAC
** * *
16050587 ACCCCCCC-AACCCCCCGATCGTCGGAACCCCATTGCCGCCAGTCAGGTTCTCC---GA------
584 ACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCC
* ** * * *
16050642 --CGATGGTACCCCGATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCCGCATCTACTGCC
649 GGCGATGGT-GCCCGGCGAAGAAAAATGCGGCACCAGCACATGC-CGAGCCCAGCATGTGCTGCC
** *
16050705 GCAATGCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGAATGAA
712 GCAACCCTCGGTCCG-TCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * * * *
16050770 CTCTGTATGCCTAAGTCAACCCAAGAAACGAGTGTACGGGCGCTCAGCCGACCAGAGAGGTGGGA
775 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * * * *
16050835 TCCACAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCAATCCTACTACCATA
840 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTACTGCCACA
* * * * *
16050893 ACCCT-TGTTCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTACGCCAACTGACGAAAC
1 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * * *
16050957 CAGCGGGTGGGCGGACGCGCGGGC-CTTACATCGGCCAGAGAGACGGGATGCGCAAGTCGTGGAT
66 GAGC--G-GGGCGGGCGGGCGGGCAC-TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* *
16051021 C-ATTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGCCATTATTT-T
127 CGA-TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT-TTTAT
* * * *
16051084 GGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGGGAAGTTTCACGGCAAGATGACTCGT
190 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
*
16051149 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAA-G
255 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGG
* *
16051213 TAGTTTTGG-CCCAAAC-TGATAGAGCGTGATCCTTGTATTTTTTTTGGCATGC-CACAAAGAA-
320 T-GTTTTGGCCCCAAACTTGGTAGA-CGTGATCCTTGTATTTTTTTTGGCATGCACA-AAAAAAT
* * * *
16051274 TCAGGTAAAAACTCGAAGTGTA-ACGATTTTTGTGACCATTTGAAAAAAGTGT-CCCATTCCAGA
382 TCAGCTAAAAACTAGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * * *
16051337 TACTTTAATGGCTACGGGCAGTAAACCTGAGTAAAAATCTCAAATGCCTCTTTTAGGAGGTGTGA
446 CACTTTAATGGCTACTGGCAGCAAACCT--GT-AAAATCTCAAATG-CTCTTTAAGGGGGTGTGA
*
16051402 GGTTCTCGAGGTTTTGATAAGGGATA-GGGGCCAATATAAGGGCCAAGTAACCAGCA-CCATCGC
507 -GTTCTCGAGG-TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT-ACCAGCACCCATCGC
* * * * * *
16051465 ACATCATGTGCGCA-AACCCCCCGGCCCCCCCCAATCGTCGGAACTCCAATGCTGTCGGTCAGGT
569 ACATCATGTGCTCACACCCCCCCGG-CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG-
* * ** * ** *
16051529 TTCTTC-GTGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGTGGCACCAAAACTTGCTCGA
632 TTCTCCGGTGATGCTCCGGCGATGGTG-CCCGGCGAAGAAAAATGCGGCACCAGCACATGC-CGA
* * * * * * *
16051593 GCCCAGGATGTGCTACTGTAACCCTCGGTCCAATCCAATCTTAGACTTGGAATGAACTCTGTATG
695 GCCCAGCATGTGCTGCCGCAACCCTCGGTCC-GTCCGATCTTAGAC-TGGAATGAACTCCGTATG
* * * *
16051658 CTTAGACTAGGAATGAAATCCGTATATTCCTAAGTCAACCCACGAAACGAGTGTTGCGGCGCGCT
758 CTTAGACTGGGAATGAACTCCG--TATGCCTAAGTCAACCCACGAAACGAGCG-TGCGG-GCGCT
* * * *
16051723 CAGTCGGCCAAAGGGGGCGGGATGCACAAGCTGGGGATC-GTCCGGGTCCCCCCTCTGCATGCTG
819 CAGCCGGCCAGA-GGGGCGGGATGCGCAAGCCGGGGATCGGT-CGGGT-CCCCCTCTGCATGCTG
*
16051787 TC-ATCCTACTGCCCCCA
881 TCGATCCTACTG-CCACA
* * * * *
16051804 ACCCTCGGT-CTGTCTGATCTTAGAC-GCGAATGAACACTGTTTGCCTAAGTCCAACCGACGAAA
1 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CCAACCGACGAAA
* * * *
16051867 CGAGGGCAGGGCGGGCGGCGGTTGGGCCACTACGGCGGCCAGAGAGACGGGGATGTGCAAGCCGT
65 CGA--GCGGGGCGGGC-G-GG-CGGG-CACTACGTCGGCCAGAGAGAC-GGGATGCGCAAGCCGT
** * * *
16051932 GGATCGATAGGGTGGTAGGTTTGTTTAAGCACATCTTCATATTTCTATACGCCAATGCCATTTTT
123 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
** * * * * *
16051997 ATCACTTTTAAATTCATACAGTGGTCCCTTAAGCCTTCACGGGAAGTTTCACGGCAAGATGACTC
188 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
*
16052062 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAA
253 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAA
* *
16052127 -GTAGTTTTGG-CCCAAACTTGATAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAGAAT
318 GGT-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
16052190 TCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA-
382 TCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
16052254 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGGTGTGAGTTCT
447 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
16052319 CAAGGTTTGATGAGTGATAGGGGGCCAATATAAGGG-CAAGTACCAGCACCCATCGCACATCATG
512 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
16052383 TGCTCACACCCCCCCGGCCCCCCCGATCGCCGGAATCCCAATGTCGCCGGTCAGGTTCTTCGGTG
577 TGCTCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTG
* * **
16052448 ATGCTCCTGCGATGGTGCCCGGACGAACAAAAATGTAGCACCAGCACATGCTC-AGGCCCAGCAT
642 ATGCTCCGGCGATGGTGCCCGG-CGAAGAAAAATGCGGCACCAGCACATGC-CGA-GCCCAGCAT
* *
16052512 GTACTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGTAATGAACTCCGTATGCTTAGACTG
704 GTGCTGCCGCAACCCTCGGTCC-GTCCGATCTTAGACTGG-AATGAACTCCGTATGCTTAGACTG
* * *
16052577 GGAATGAACTCCGTATGCCTAAGTCAATCCACGAAACGAGCGTGTGGGCGCTCAGCCGACCAGAG
767 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
** * * * **
16052642 GGGCGGGATGCATAAGCCGGGGATCGGTCGGGTCCCTCTCTACATGCTGCCGATCCTACTGCCGT
832 GGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTACTGCCAC
16052707 A
897 A
* * * * *
16052708 ACCTTCGGTCCGGTCTAATCTTAGACTAGGAGTGAACTCCGTATGCCTAAGCGAACCGACGAAAC
1 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * *
16052773 AAGCGGGGCGGGCGGGCGGGCACTAAGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGTTCGAT
66 GAGCGGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * *
16052838 CGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTG
131 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTG
16052903 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
196 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
*
16052968 TTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGTGTTTT
261 TTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGTGTTTT
* * * * *
16053033 GGCCCCAAACTTGGTAGACATGATCCCTGTATTGTTGTTAGCATGCACAAAAAAAGTTCAGCTAA
326 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA-TTCAGCTAA
*
16053098 AAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
390 AAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
16053163 GGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTT
455 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * **
16053228 GATGAGGGATAGGGGGCGAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGAACA
520 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCTCACA
*
16053293 -CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGTTTCTCCGGTGATGCTCCG
585 CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCG
* * * * * *
16053357 ACGATGGTGCCCCGACGAAGAAAAATTCGACACCAGCACATGCCCATGCCCAGCATGTGCTGTCG
650 GCGATGGTG-CCCGGCGAAGAAAAATGCGGCACCAGCACATGCCGA-GCCCAGCATGTGCTGCCG
* * *
16053422 CAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGAGAATGTAC
713 CAACCCTCGGTC-CGTCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * * **
16053487 TCTGTATACCTAAGTCAACCCATGAAATGAGCGTGTGGATGCTCAGCCGGCCAGAGGGGCGGGAT
776 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * ** ** * ***
16053552 GCGTAAGTCGAGGATCGGTCGGGTCCCTTTCTGCATGCTACCGATCCTGCTGCTGTA
841 GCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTACTGCCACA
* * *
16053609 ACCCTCGGTCTGGTCCT-ATATTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
1 ACCCTCGGTCCGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * *
16053673 CGAGCGAGTAGGCGGGCGAGCGGGCATTGCGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGAT
65 CGAGCG-G--GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* *
16053738 CGATAGGGTGGTAGGTGGGTTTATGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
127 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
*
16053803 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTT
192 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * *
16053868 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGATGGAG
257 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGTG
*** * *
16053933 TTTTGG-TAAACAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAG
322 TTTTGGCCCCA-AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
* * *
16053997 CTAAACACTCA-AAGTGTACAAGATTCTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACT
386 CTAAAAACT-AGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
16054061 TTAATGGCTACTGGCTGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTCTGAGTTCTCGA
450 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
**
16054126 GGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCATAACCCATCGCACATCATGTGC
515 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
16054190 GT-ACACCCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGCGAT
580 -TCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGAT
* * * *
16054254 GGT---GC-A---T---CGGCAAAGAAAAATGCGACACCAGAACATGCCCGAGCCCAGCATGTGC
644 GCTCCGGCGATGGTGCCCGGCGAAGAAAAATGCGGCACCAGCACATG-CCGAGCCCAGCATGTGC
* * * * * * *
16054309 TGCCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGATTGAAGTCCGTATGCTTACACTGGGAA
708 TGCCGCAACCCTCGGTC-CGTCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAA
* * * *** *
16054374 TGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAACTGT
771 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * * * * *
16054439 GGGATGCGCAAGCCGGGGATCGGGCGGGTCCCCCTCTACGTGCCGCCAATCGTGCTGCCACA
836 GGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTACTGCCACA
* * *
16054501 ACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAT
1 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * *
16054566 GAGC-GGGCGGGCGGGCGGACACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
66 GAGCGGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * * **
16054630 CGGGTGGTTGGTGGGTTTCGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATATCTTG
131 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTG
* *
16054695 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTA
196 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * *
16054760 TTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAT-TTT
261 TTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGG-TGTTT
* *
16054824 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAA
325 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
* * *
16054889 AAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAAT
390 AAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
16054954 GGCTACTGGCAGCGAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTT
455 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * * *
16055019 GATGAGGGATAAGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGCACACA
520 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCTCAC-
* * * * * * **
16055084 ACCCCCCCGGCCCCCCAGATCGCCAGAACCCC-ATCGCCACCGGTCAAGTTCTTCGACGATGCTC
584 ACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT-GCCGCCGGTCAGGTTCTCCGGTGATGCTC
* * * *
16055148 CGGCGATGGTGCCTCAGTGAAGAAAAATGCGGCACCAGCACATGCTCGAGCACAGCATGTGCTAC
648 CGGCGATGGTGCC-CGGCGAAGAAAAATGCGGCACCAGCACATGC-CGAGCCCAGCATGTGCTGC
16055213 CGCAA-CC-C--T-CG---G----T---CT-G---G---TCCG-AT-CTTAGACTGGGAATGAAC
711 CGCAACCCTCGGTCCGTCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * *
16055254 TCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGTTTAGCCGGCCAGAGGGGCGGGAT
776 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * **
16055319 GCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGAATGCTATCAATCCTGCTGCCTTA
841 GCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTACTGCCACA
* * * * *
16055376 ACCCTCAGTTCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTCAGCCAACCGACAAAAC
1 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
*
16055441 GAGCGGGCGGGCGGGTGGGCCGACGAGCACTACG-CGGCCAGAGAGACGGGATGCGCAAGCCGTG
66 GAGC--G-GGGCGGGCGGG-CG--G-GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * *
16055505 GATCGATAGAGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
124 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
* *
16055570 TGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTC-
189 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
** *
16055634 TTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTC-AGAA
254 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AA
* *
16055698 GGAT-TTTTGGCCCCAAAGTTGGTAGACGTGATCCTTGTTTTTTTTTTGGCATGCACAAAAAAAT
318 GG-TGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
** *
16055762 TTGGCTAAAAACTCA-AAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGA
382 TCAGCTAAAAACT-AGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
16055826 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
446 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
16055891 TCAAGGTTTGATGAGGGAT-GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG-----CA-
511 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * *
16055949 -----CAC-CCCCCTCAGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCAGT
576 GTGCTCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGT
* * *
16056008 GATGCTCCGGCGATGGTGCACCGGTGAAGAAAAGTGCAGCACCAGCACATGCCCGAGCCCAGCAT
641 GATGCTCCGGCGATGGTGC-CCGGCGAAGAAAAATGCGGCACCAGCACATG-CCGAGCCCAGCAT
** * * *
16056073 GTGCTGCTACAACCCTCGGTCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
704 GTGCTGCCGCAACCCTCGGTC-CGTCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTG
* * * * * * *
16056138 GGAATGAACTCCGTATGCCTAAGTCAACCCGCGAAATGAGCATGCGAGCACTCAGCCGCCCAGAT
767 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* *
16056203 GGACGGGATGCGCAAGCCGGGGATC-GACTGGGTCCCCCTCTG
832 GGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTG
16056245 TGTGTTGGCG
Statistics
Matches: 7018, Mismatches: 805, Indels: 417
0.85 0.10 0.05
Matches are distributed among these distances:
867 108 0.02
868 6 0.00
869 4 0.00
871 1 0.00
873 1 0.00
875 183 0.03
876 2 0.00
877 4 0.00
879 10 0.00
880 39 0.01
881 253 0.04
882 148 0.02
883 10 0.00
884 54 0.01
885 217 0.03
886 122 0.02
887 84 0.01
888 689 0.10
889 373 0.05
890 70 0.01
891 351 0.05
892 525 0.07
893 145 0.02
894 34 0.00
895 72 0.01
896 250 0.04
897 344 0.05
898 469 0.07
899 71 0.01
900 73 0.01
901 472 0.07
902 81 0.01
903 412 0.06
904 308 0.04
905 172 0.02
906 35 0.00
907 31 0.00
908 30 0.00
909 36 0.01
910 245 0.03
911 88 0.01
912 18 0.00
913 18 0.00
914 22 0.00
915 245 0.03
916 80 0.01
917 13 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
GAGCGGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGTGTTTT
GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
AACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCTCACAC
CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGG
CGATGGTGCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCGAGCCCAGCATGTGCTGCCGCAA
CCCTCGGTCCGTCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
AGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTACTGCCACA
Found at i:16053472 original size:26 final size:26
Alignment explanation
Indices: 16053443--16053493 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16053433 CTGGTCCGAT
16053443 CTTAGACT-AGGAATGAACTCCGTATG
1 CTTAGACTGA-GAATGAACTCCGTATG
* *
16053469 CTTAGACTGAGAATGTACTCTGTAT
1 CTTAGACTGAGAATGAACTCCGTAT
16053494 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:16054364 original size:26 final size:26
Alignment explanation
Indices: 16054335--16054387 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16054325 CTGGTCTGAT
* * *
16054335 CTTAGACTGGGATTGAAGTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
16054361 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
16054387 C
1 C
16054388 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:16056139 original size:26 final size:26
Alignment explanation
Indices: 16056103--16056155 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16056093 CTGGTTCAAT
16056103 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16056129 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16056155 C
1 C
16056156 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16056324 original size:26 final size:26
Alignment explanation
Indices: 16056288--16056340 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16056278 CCAGTCCAAT
*
16056288 CTTAGATTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
16056314 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16056340 C
1 C
16056341 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16057227 original size:26 final size:26
Alignment explanation
Indices: 16057185--16057237 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16057175 TCGGTCCGAT
*
16057185 CTTAGACTAGGACTGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
16057211 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
16057237 C
1 C
16057238 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16058975 original size:26 final size:26
Alignment explanation
Indices: 16058939--16058991 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16058929 CCAGTCCGAT
16058939 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
16058965 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
16058991 C
1 C
16058992 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:16059708 original size:903 final size:904
Alignment explanation
Indices: 16058061--16059868 Score: 2593
Period size: 903 Copynumber: 2.0 Consensus size: 904
16058051 CTGGTCTGGT
* * *
16058061 CTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGAAATGAGCGTGCGGGTGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGAAATGAACGTACGGGTGCTCAGC
* * ** * * *
16058126 CGACCAGAAGGGCGGGATGCGTAAGACGGGGATCGGCCGGGTTCGCCTCTGCGTGCTGCCGATCA
66 CAACCAGAAGGGCAGGATGCACAAGACGGGGATCGGCCAGGTTCCCCTCTGCGTGCTACCGATCA
* *
16058191 TGCTGCTGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAA
131 TGCTGCTGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATACCTAAGCCAA
** * * * *
16058256 TCGATGAAATGATCGTGCGAGCGGGCGGGCGGGTACTACACCGGCCAGAGAGACGAGATGAGCAA
196 TCGACAAAACGAGCGTGCGAGCGGGCGAGCGGGCACTACACCGGCCAGAGAGACGAGATGAGCAA
* * *
16058321 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCA
261 GCCATGGACCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
16058386 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCGTCACGTGAAGTTTCATGGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCGTCACGTGAAGTTTCATGGCAAGAC
** ** * *
16058451 GACTCATTTTCCATTTTTCATGATTTTTGAAACCTTTTGCGGTTCGAGATTATTTAAATTTTTTT
391 GACTCATTTTCCATTTTTCACAATTTTCAAAACCTTTTGCAGTTCGAGATTATTTAAATTTTTTA
* * * *
16058516 CGAAAGGAGTTTTGGCCCTAAACTCGGTAGACGTGATCCTTTTATTTTTGTTGGATGCACAAAAA
456 CGAAAGGAGTTTTGGCCCCAAACTCGGTAGACATAATCCTTGTATTTTTGTTGGATGCACAAAAA
* *
16058581 TATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTACCCATTTCA
521 AATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTACCCATTTCA
*
16058646 GACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAATCCCCTTTAGGGAGGTGTGAGT
586 GACACTTTAATGCCTACTGGCAGCAAACCTGTAAAAGCTCAAATCCCCTTTAGGGAGGTGTGAGT
* * * *
16058711 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGTACATC
651 TCTCGAAGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATC
* *
16058776 ATGTGCGCACACCCCCCCCAGTGCCCCCGATCATCGGAACCCCAATGCCGCCGATCAGGTTCTCC
716 ATGTGCGCACACCCCCCCCAGGGCCCCCGATCACCGGAACCCCAATGCCGCCGATCAGGTTCTCC
*
16058841 GGCGATGCTCC-GACGATGGTGAC-CCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
781 AGCGATGCTCCAG-CGATGGTG-CGCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
* * * * *
16058904 AGCATTTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTAGA-CTGGGAATGAACTCTGTATG
844 AGCATGTGCTGCCGCAACCATCGGTCCAGTCCAATCTTAGATC-GGGAATGAACTCCGTATG
* * * *
16058965 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACTCACGGAATGAACGTACGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGAAATGAACGTACGGGTGCTCAGC
* *
16059030 CAACCAGAAGGGCAGGATGCACAAG-CTTGGGATCGGTCAGG-TCCCTCTCTGCGTGCTACCGAT
66 CAACCAGAAGGGCAGGATGCACAAGAC-GGGGATCGGCCAGGTTCCC-CTCTGCGTGCTACCGAT
* *
16059093 CCTGCTGCTGCAACCCTCAATCC-GTCTGATCTTAG-CTTGGGAATGAACTCCATATGCCTAAGC
129 CATGCTGCTGCAACCCTCAATCCGGTCTGATCTTAGAC-TGGGAATGAACTCCATATACCTAAGC
* * * * *
16059156 C-AGCTGACAAAACGAGC-TGGCGGGCGGGTGATCGGGCACTACACCGGCCAGAGAGACGGGATG
193 CAATC-GACAAAACGAGCGT-GCGAGCGGGCGAGCGGGCACTACACCGGCCAGAGAGACGAGATG
* * * *
16059219 CGCAAGTCATGGACCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCGAA
256 AGCAAGCCATGGACCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* * *
16059284 TGCCATTTTTATGTCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
321 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCGTCACGTGAAGTTTCATGGC
* ** * *
16059349 AAGACGACTCGTTTTTTATTTTTCACAATTTTCAAAACTTTTTGCAGTTCGAGATTTTTTAAAAT
386 AAGACGACTCATTTTCCATTTTTCACAATTTTCAAAACCTTTTGCAGTTCGAGATTATTT-AAAT
* *
16059414 TTTTTAGGAAA-GAGTTTTGGCCCCAAACTTGGTAGACATAATCCTTGTATTTTT-TTGAGCATG
450 TTTTTACGAAAGGAGTTTTGGCCCCAAACTCGGTAGACATAATCCTTGTATTTTTGTTG-G-ATG
*
16059477 CACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGCT-TC
513 CACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG-TGTA
* * * **
16059540 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAGCCTGTAAAAGCTCAAATGCTTTTTAAGGG
577 CCCATTTCAGACACTTTAATGCCTACTGGCAGCAAACCTGTAAAAGCTCAAATCCCCTTT-AGGG
16059605 -GGTGTGAGTTCTCGAAGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCC
641 AGGTGTGAGTTCTCGAAGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCC
* * *
16059669 ATCGCACATCATGTGCGCACACCCCCGCC-GGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGG
706 ATCGCACATCATGTGCGCACACCCCCCCCAGGG-CCCCCGATCACCGGAACCCCAATGCCGCCGA
* * ** *
16059733 TCAGGTTCTCCAGTGATGCTCCAGCGATGGTGCGTCGGTGAAGAAAAATGTGGCACCAACACATG
770 TCAGGTTCTCCAGCGATGCTCCAGCGATGGTGCGCCGACGAAGAAAAATGCGGCACCAACACATG
*
16059798 CCCGAGCCCAGCATGTGCTGCCGCAACCATCGGTCCGGTCCAATCTTAGATCGGGAATGAACTCC
835 CCCGAGCCCAGCATGTGCTGCCGCAACCATCGGTCCAGTCCAATCTTAGATCGGGAATGAACTCC
16059863 GTATG
900 GTATG
16059868 C
1 C
16059869 CTAAGCCAAC
Statistics
Matches: 802, Mismatches: 88, Indels: 29
0.87 0.10 0.03
Matches are distributed among these distances:
902 10 0.01
903 591 0.74
904 201 0.25
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (904 bp):
CTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGAAATGAACGTACGGGTGCTCAGC
CAACCAGAAGGGCAGGATGCACAAGACGGGGATCGGCCAGGTTCCCCTCTGCGTGCTACCGATCA
TGCTGCTGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATACCTAAGCCAA
TCGACAAAACGAGCGTGCGAGCGGGCGAGCGGGCACTACACCGGCCAGAGAGACGAGATGAGCAA
GCCATGGACCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCGTCACGTGAAGTTTCATGGCAAGAC
GACTCATTTTCCATTTTTCACAATTTTCAAAACCTTTTGCAGTTCGAGATTATTTAAATTTTTTA
CGAAAGGAGTTTTGGCCCCAAACTCGGTAGACATAATCCTTGTATTTTTGTTGGATGCACAAAAA
AATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTACCCATTTCA
GACACTTTAATGCCTACTGGCAGCAAACCTGTAAAAGCTCAAATCCCCTTTAGGGAGGTGTGAGT
TCTCGAAGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCCCAGGGCCCCCGATCACCGGAACCCCAATGCCGCCGATCAGGTTCTCC
AGCGATGCTCCAGCGATGGTGCGCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAG
CATGTGCTGCCGCAACCATCGGTCCAGTCCAATCTTAGATCGGGAATGAACTCCGTATG
Found at i:16060548 original size:715 final size:715
Alignment explanation
Indices: 16059188--16060594 Score: 2259
Period size: 715 Copynumber: 2.0 Consensus size: 715
16059178 GGCGGGTGAT
*
16059188 CGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGTCATGGACCGATAGGGTGGTAGGTGGGT
1 CGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCATGGACCGATAGGGTGGTAGGTGGGT
* * * * *
16059253 TTAGGCACATCTTCATATTTCTGCGTGCGAATGCCATTTTTATGTCTTGTAAATTCATGCAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGG
16059318 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACAATTTTCA
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACAATTTTCA
* **
16059383 AAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTAGGAAAGAGTTTTGGCCCCAAACTTGGTA
196 AAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTAGGAAAGAGTTTTGGCAACAAACTTGGTA
*
16059448 GACATAATCCTTGTATTTTTTTGAGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAA
261 GACATAATCCTTGTATTTTTTTGAGCATGCACAAAAAAATTCAGCCAAAAACTCGAAATGTACAA
* *
16059513 GATTTTGTGACCATTTGAAAAAGCTTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAGCC
326 GATTTTGTGACCATTTGAAAAAGCTTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACC
*
16059578 TGTAAAAGCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAAGTTTGATGAGGGATAGGGGGCC
391 TGTAAAAGCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGTTTGATGAGGGATAGGGGGCC
*
16059643 AATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGCCGGGCCCCCCG
456 AATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGCCGGACCCCCCG
* * * * *
16059708 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGTGATGCTCCAGCGATGGTGCGTCGGTG
521 ATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCAGCGATACTCCAGCGATGGTGCCTCGGCG
*
16059773 AAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCATCGGTCCGGTC
586 AAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCATCGGTCCAGTC
16059838 CAATCTTAGATCGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACTAAAGGGCGGGCAGG
651 CAATCTTAGATCGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACTAAAGGGCGGGCAGG
* * * * *
16059903 CGGGTACTACGCCGGCCAGAGAGACGGGATTCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
1 CGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCATGGACCGATAGGGTGGTAGGTGGGT
* *
16059968 TTGGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTTATACAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
16060033 TCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTA
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACAATTTTCA
* * * *
16060098 AAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT-TGAAAGGAGTTTTGGCAACAAACTTGGT
196 AAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTAGGAAA-GAGTTTTGGCAACAAACTTGGT
* * * * *
16060162 AGACGTGATCCTTGTATTTTTGTTG-GCATGCACAAAACAATTCAGCTAAAAACTTGAAATGTAC
260 AGACATAATCCTTGTATTTTT-TTGAGCATGCACAAAAAAATTCAGCCAAAAACTCGAAATGTAC
**
16060226 AAGATTTTGTGTTCATTTGAAAAAAG-TATCCCCATTTCAGACACTTTAATAGCTACTGGCAGCA
324 AAGATTTTGTGACCATTTG-AAAAAGCT-TCCCCATTTCAGACACTTTAATAGCTACTGGCAGCA
* *
16060290 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
387 AACCTGTAAAAGCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGTTTGATGAGGGATAGGG
*
16060355 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CC-GACCC
452 GGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGCCGGACCC
* **
16060418 ACCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCC-GACGATACTCTGGCGATGGTGCC
517 -CCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCAG-CGATACTCCAGCGATGGTGCC
*
16060482 TCGGCGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
580 TCGGCGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCATCGGT
* * *
16060547 CCAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACC
645 CCAGTCCAATCTTAGATCGGGAATGAACTCCGTATGCCTAAGCCAACC
16060595 CATGAAACGA
Statistics
Matches: 635, Mismatches: 51, Indels: 12
0.91 0.07 0.02
Matches are distributed among these distances:
714 9 0.01
715 466 0.73
716 160 0.25
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (715 bp):
CGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCATGGACCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACAATTTTCA
AAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTAGGAAAGAGTTTTGGCAACAAACTTGGTA
GACATAATCCTTGTATTTTTTTGAGCATGCACAAAAAAATTCAGCCAAAAACTCGAAATGTACAA
GATTTTGTGACCATTTGAAAAAGCTTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACC
TGTAAAAGCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGTTTGATGAGGGATAGGGGGCC
AATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGCCGGACCCCCCG
ATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCAGCGATACTCCAGCGATGGTGCCTCGGCG
AAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCATCGGTCCAGTC
CAATCTTAGATCGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACTAAAGGGCGGGCAGG
Found at i:16061471 original size:26 final size:26
Alignment explanation
Indices: 16061421--16061472 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16061411 CCGGTCCGAT
*
16061421 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCAGTATG
* *
16061447 CTTAGACTGGGAATGAACTTAGTATG
1 CTTAGACTAGGAATGAACTCAGTATG
16061473 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCAGTATG
Found at i:16062358 original size:26 final size:26
Alignment explanation
Indices: 16062322--16062374 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16062312 TCCGTCCGAT
**
16062322 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
16062348 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
16062374 C
1 C
16062375 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:16062560 original size:901 final size:897
Alignment explanation
Indices: 16059813--16063250 Score: 4740
Period size: 874 Copynumber: 3.9 Consensus size: 897
16059803 GCCCAGCATG
* * * *
16059813 TGCTGCCGCAACCATCGGTCCGGTCCAATCTTAG-ATCGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGAAT-GGGAATGAACTCCGTATGCCTAAGCCA
* * * ** * * *
16059877 ACCGAAGAAACTAAAGGGCGGGC---AGGCGGGTACTACGCCGGCCAGAGAGACGGGATTCGCAA
65 ATCGACGAAACGAGCGGGCGGGCGGGAGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
* *
16059939 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTGCATGCCAATACCA
130 GCCGTGGATCGATAGGGTGGTAGGT-GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * * *
16060004 TTTTTATGGCTTGTAAATTTATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
194 TTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
* * * * *
16060069 GACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
259 GACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * ** *
16060134 TGAAAGGAGTTTTGGCAACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
324 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAA
* ** *
16060199 CAATTCAGCTAAAAACTTGAAATGTACAAGATTTTGTGTTCATTTGAAAAAAGTATCCCCATTTC
389 -AATTCAGCTAAAAAC-TGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
16060264 AGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
452 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
16060329 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
517 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
16060394 CATGTGCGCACACCCCCCCGACCCACCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCC
582 CATGTGCGCACACCCCCCCGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * ** *
16060459 GACGATACTCTGGCGATGGTGCCTCGGCGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAG
646 GGCGATGCTCTGGC-ATGGTGCCCCGATGAAG-AAAATGCGGCACCAACACATGCCCGAGCCCAG
16060524 CATGTGCTGCCGCAA-CC-C--T-C-G---G-TC-----C-----A-G---TCCG-AT-CTTAGA
709 CATGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * *
16060563 TTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTTAGCCGACCA
774 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGCCGGCCA
* * * * *
16060628 AAGGGGCGGGATGTGCAGGCCGGGCATCGGTCGGGTCCCCTTCTACGTGCTGCCAATCC
839 GAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCAATCC
* ** **
16060687 TGCTGCTGCAACCCTCAGTCCAGTTTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
16060752 TTGACGAAACGATCGGGCGGGC---AGGAGGGCACTACGCTGGCAAGAGAGACGGGATGCGCAAG
66 TCGACGAAACGAGCGGGCGGGCGGGAGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAG
* * * * *
16060814 CCGTGAATCGATAGGGTGGTAGGTGGATTTACGTACATCTTCATATTTCTACATGTCAATGCCAT
131 CCGTGGATCGATAGGGTGGTAGGTGG-TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
16060879 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACATGAAGTTTCATGGCAAGACG
195 TTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACG
*
16060944 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
260 ACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * * * *
16061009 GAAAGGAGTTTTGGCCGCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTAGCATGCACATAAA
325 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACA-AAA
* * *
16061074 AATTCAGCTAAAAACTTGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCG
389 AATTCAGCTAAAAAC-TGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
16061139 GACATTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGT
453 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* **
16061204 TCCCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCATAACCCATCGCACATC
518 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
*
16061269 ATGTGCGCACACCCTCCCCGGCCCCCCCGATCG-CTGGAACCCCAATGCCGCCGATCAGGTTCT-
583 ATGTGCGCACACCC-CCCCGG-CCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTC
* * *
16061332 C--C-A---AC--G-ATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATTCCCGAGCCTAG
645 CGGCGATGCTCTGGCATGGTGCCCCGATGAAG-AAAATGCGGCACCAACACATGCCCGAGCCCAG
*
16061388 CATGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGA
709 CATGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
** * * * * * *
16061453 CTGGGAATGAACTTAGTATGGCTAAGTCAACCCACGAAATGAGTGTGCGGGTGCTCAGTCGGCCA
774 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGCCGGCCA
* * * * **
16061518 GAGCGACGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCTCTCGGCGTGCTGCCAATCC
839 GAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCAATCC
* * *
16061577 TGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAATTCTGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
16061642 TCGACGAAACGAGCGGGCGGGCGGGAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAGG
66 TCGACGAAACGAGCGGGCGGGCGGGAGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAG
*
16061707 CTGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
131 CCGTGGATCGATAGGGTGGTAGGTG-GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
16061772 TTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACG
195 TTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACG
* * *
16061837 AGTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTC
260 ACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* *
16061902 GGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
325 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAA
* *
16061967 ATTCATCTAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAT
390 ATTCAGCTAAAAACT-GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
16062032 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
454 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
16062097 CTCGAGGTTTGATGATGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
519 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* *
16062162 TGTGCGCACACCCCCCCTGGCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
584 TGTGCGCACACCCCCCC-GGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * *
16062227 CGATGCTCTGGCAATGGTGCCCCAACGAAGAAAATGCGACACCAACACATGCCCGAGCCCAGCAT
648 CGATGCTCTGGC-ATGGTGCCCCGATGAAGAAAATGCGGCACCAACACATGCCCGAGCCCAGCAT
* * * * *
16062292 GTGCCGTCGTAACCCTCAGTTCC-GTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACT
712 GTGCTGCCGCAACCCTC-GATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
*
16062356 GGGAATGAACACCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGCCGGCCAGA
776 GGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGCCGGCCAGA
* * * ** *
16062421 GGGGTGGGATGCGTAAGCCGGGGATCGGTTGGGTCCCCCTCTACGTGCTATCGATCC
841 GGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCAATCC
* * * * *
16062478 TGCTACCACAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTGCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
16062543 TCGACGAAACGAGCGGGCGGGCGGGCGGGCGAGCACTACGCTGGCCCGAGAGACGGGATGCGTAA
66 TCGACGAAACGAGCGGGCGGGCGGG-AGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
**
16062608 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGT-GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
16062673 TTTTTATGGCTTGTAAATTCATAA-AATGGTCCCTTAAGCCTTCACTTGAACTTTCATGGCAAGA
194 TTTTTATGGCTTGTAAATTCA-AACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGA
* *
16062737 CGACTCGTTTTCTATTTTTTAAGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
258 CGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * * *
16062802 TCGGAAGGAGTTTTGGTCCCAAACTTGGTTGACATGAACCTTGTATTTTTATTGGCATGCACAAA
323 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCAC-AA
*
16062867 AAAATTCAGCTAAAAACTCAAGGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
387 AAAATTCAGCTAAAAACTGAA-GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
16062932 CAGACCCTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGA
451 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* ** * * * * ** *
16062997 GTTGTTAAGATTTGATAAGGGATAGGGGTCCAATATCAGGAACAAGTACCAGCACCCATAGCACA
516 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
16063062 TCATGTGTGCACA-CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
581 TCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-C
* * * *
16063126 CGGTGATGCTCTGGCGATGGTG-CCCGATGAAGAAAATTGTGGCACCAGCACATGACCGAGCCCA
645 CGGCGATGCTCTGGC-ATGGTGCCCCGATGAAGAAAA-TGCGGCACCAACACATGCCCGAGCCCA
* * * *
16063190 GCATGTGCTACCGCCACCCTCGGTCCGGTCCGATCTTATACTGGGAATGAACTCCGTATGC
708 GCATGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
16063251 CTAAGTCAAC
Statistics
Matches: 2276, Mismatches: 229, Indels: 90
0.88 0.09 0.03
Matches are distributed among these distances:
864 59 0.03
865 2 0.00
866 2 0.00
868 2 0.00
869 1 0.00
870 1 0.00
871 1 0.00
872 1 0.00
873 3 0.00
874 539 0.24
875 44 0.02
876 3 0.00
879 1 0.00
884 1 0.00
885 1 0.00
888 4 0.00
889 2 0.00
890 185 0.08
891 41 0.02
892 202 0.09
893 272 0.12
894 2 0.00
895 1 0.00
898 1 0.00
900 1 0.00
901 326 0.14
902 386 0.17
903 192 0.08
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
TGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAA
TCGACGAAACGAGCGGGCGGGCGGGAGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAA
TTCAGCTAAAAACTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA
TGCTCTGGCATGGTGCCCCGATGAAGAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGGGGC
GGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCAATCC
Found at i:16064337 original size:26 final size:26
Alignment explanation
Indices: 16064308--16064360 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16064298 GTGGTCTGAT
* *
16064308 CTTAAACTGAGAATGAACTCTGTATG
1 CTTAAACTGAGAATCAACTCCGTATG
* *
16064334 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAAACTGAGAATCAACTCCGTATG
16064360 C
1 C
16064361 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAAACTGAGAATCAACTCCGTATG
Found at i:16065230 original size:26 final size:26
Alignment explanation
Indices: 16065201--16065253 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16065191 CCGGTCTTAT
*
16065201 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16065227 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16065253 C
1 C
16065254 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16065460 original size:893 final size:893
Alignment explanation
Indices: 16063590--16065581 Score: 2801
Period size: 893 Copynumber: 2.2 Consensus size: 893
16063580 TTTCAAAAGG
* *
16063590 ATCTTAGACTGGGAATGAACTCCGTACACCTAAGCCAACCGACGAAAC-AAGCGGGCTGGCGGG-
1 ATCTTAGACTTGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAACGAA-CGGGC-GGCGGGC
* * * *
16063653 TGGACGGGCACTACGCCGGCCAGAGAGACAGGATGCGCATGCCGTGGATCAATTGGGTGGTAGGT
64 GGGAC-GGCACTACG-CGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
16063718 GGGTTTAGGCAGATCTTCAAATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
127 GGGTTTAGGCACATCTTCAAATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
16063783 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATT
192 ATGGTCCCTTAAGACTTCACGTGAAGTTTCATCGCAAGACGACTCGTTTTCTATTTTTCACGATA
** * *
16063848 TTTGAAATTTTTTGCGGTTCGGGATTTTTTTAAAATTTTTTCGGAAGAAATTTTAGCCCCAAACT
257 TTCAAAACTTGTTGCGGTTCGGGATTTTTTTAAAATTTTTTCGGAAGAAATTTTAGCCCCAAACT
*
16063913 TGGTAGACGTGACCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAAGTCGAAGTG
322 TGGTAGACGTGACCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTG
* * * *
16063978 TGCAAGATTTTGTGATCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAG
387 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAG
16064043 CAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
452 CAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
16064108 GGCCAATATAAGGGCCAAGTACCAAGACCCATCGCTCATCATGTGCGCACACCCCCGGCCCCCCC
517 GGCCAATATAAGGGCCAAGTACCAAGACCCATCGCACATCATATGCGCACACCCCCGGCCCCCCC
* *
16064173 GATCGCCGGAACCCTAATGCCGCCGGATAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGAC
582 GATCACCGGAACCCTAATGCCACCGGATAGGTTCTCC-GCGA-G--CC-A-GATGGTGCCCCGAC
** * **
16064238 AAAGAAAAATGCGACACCAGCACATGCCTGAGCCTAGCATGTGCTACCGCAACCCTCGGTGTGGT
641 AAAGAAAAATGCGACACCAGCACATGCCCAAGCCAAGCATGTGCTACCGCAACCCTCGGTCCGGT
*
16064303 CTGATCTTAAACTGAGAATGAACTCTGTATGCTTAGACTGGGAATCAACTCCGTATGCCTAAGTC
706 CTGATCTTAAACTGAGAATGAACTCCGTATGCTTAGACTGGGAATCAACTCCGTATGCCTAAGTC
* * *
16064368 AACCAACGAAATGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
771 AACCAACGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATC
* ** * ***
16064433 AGCCGGGTCTCCCTCTGCGTGCTACCGATCCTACTGCCGTAACCCTCGGTCTGGTTTG
836 AGCCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCACAACCCTCGGTCCGGTCCA
* * * * *
16064491 ATCTTAGACCTGGAATGAACTCCGTACGCCTAAGCCAACTGACAAAACGAGCGGGTGGGCGGGCG
1 ATCTTAGACTTGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAACGAACGGG-CGGCGGGCG
* *
16064556 GG-CGAGCACTACGTCGACCAAAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
65 GGACG-GCACTACG-CGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
16064620 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
128 GGTTTAGGCACATCTTCAAATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
16064685 TGGTCCCTTAAGACTTCACGTGAAGTTTCATCGCAAGACGACTCGTTTTCTATTTTTCATGATAT
193 TGGTCCCTTAAGACTTCACGTGAAGTTTCATCGCAAGACGACTCGTTTTCTATTTTTCACGATAT
** * *
16064750 TCAAAACTTGTTGCGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTTA-CCTCAAATT
258 TCAAAACTTGTTGCGGTTCGGGATTTTTTTAAAATTTTTTCGGAA-GAAATTTTAGCCCCAAACT
* * * *
16064813 TGGTAGACGTGATCCTTTTATTTTT-TTCGGCATGCATAAAAGAATTCAGCTAAAAACTCGAAGT
322 TGGTAGACGTGACCCTTGTATTTTTGTT-GGCATGCACAAAACAATTCAGCTAAAAACTCGAAGT
*
16064877 GTACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAGA-ACTTTAATGGCTACTAGCA
386 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCA
* *
16064941 GCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
451 GCAAACCTGTAAAATCTAAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-
*
16065006 ATGGGCCAATATAAGGGCCAAGTACC-AGCACCCATCGCACATCATATAG-GCACACCCCACTCG
514 AGGGGCCAATATAAGGGCCAAGTACCAAG-ACCCATCGCACATCATAT-GCGCACA-CCC-C-CG
* * * *
16065069 GCCCCCCTGATCACTGGAACCCTAATGTCACC-GTTCAGGTTCT-C-CG-G-C-GATGGTGCCCC
574 GCCCCCCCGATCACCGGAACCCTAATGCCACCGGAT-AGGTTCTCCGCGAGCCAGATGGTGCCCC
* * * * *
16065128 GACGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCAAGCATGTGCTGCCGTAACCCTCGGTCC
638 GACAAAGAAAAATGCGACACCAGCACATGCCCAAGCCAAGCATGTGCTACCGCAACCCTCGGTCC
* * * * * *
16065193 GGTCTTATCTTAGACTGGGATTGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAA
703 GGTCTGATCTTAAACTGAGAATGAACTCCGTATGCTTAGACTGGGAATCAACTCCGTATGCCTAA
* * * * * *
16065258 GTCAACCCATGGAACGAGCGTGCGGGGGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGTCGGGG
768 GTCAACCAACGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGGGG
16065323 AT-AGGCCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCACAACCCTCGGTCCGGTCCA
833 ATCA-GCCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCACAACCCTCGGTCCGGTCCA
* * * *
16065384 ATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCTACCGACGAAACGAATGAGCGGCCGGGCG
1 ATCTTAGACTTGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAACGAACGGGCGG-CGGGCG
*** *
16065449 GGACGGCACTACGCTGGCCAGAGAGGTGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGG
65 GGACGGCACTACGC-GGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
16065514 GTTTAGGCACATCTTCAGATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCACACAAT
129 GTTTAGGCACATCTTCAAATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
16065579 GGT
194 GGT
16065582 AAGACGACTA
Statistics
Matches: 971, Mismatches: 102, Indels: 44
0.87 0.09 0.04
Matches are distributed among these distances:
892 4 0.00
893 404 0.42
894 2 0.00
896 1 0.00
899 50 0.05
900 160 0.16
901 303 0.31
902 7 0.01
903 4 0.00
904 36 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (893 bp):
ATCTTAGACTTGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAACGAACGGGCGGCGGGCGG
GACGGCACTACGCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCAAATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGACTTCACGTGAAGTTTCATCGCAAGACGACTCGTTTTCTATTTTTCACGATATTCA
AAACTTGTTGCGGTTCGGGATTTTTTTAAAATTTTTTCGGAAGAAATTTTAGCCCCAAACTTGGT
AGACGTGACCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAA
CCTGTAAAATCTAAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCC
AATATAAGGGCCAAGTACCAAGACCCATCGCACATCATATGCGCACACCCCCGGCCCCCCCGATC
ACCGGAACCCTAATGCCACCGGATAGGTTCTCCGCGAGCCAGATGGTGCCCCGACAAAGAAAAAT
GCGACACCAGCACATGCCCAAGCCAAGCATGTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAA
ACTGAGAATGAACTCCGTATGCTTAGACTGGGAATCAACTCCGTATGCCTAAGTCAACCAACGAA
ACGAGCGTACGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAGCCGGGTCC
CCCTCTGCGTGCTACCGATCCTACTGCCACAACCCTCGGTCCGGTCCA
Found at i:16067419 original size:26 final size:26
Alignment explanation
Indices: 16067390--16067442 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16067380 GTTGACTTAG
16067390 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16067416 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16067442 G
1 G
16067443 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16067439 original size:101 final size:101
Alignment explanation
Indices: 16067264--16067465 Score: 305
Period size: 101 Copynumber: 2.0 Consensus size: 101
16067254 GAGCGCCCGC
* ** **
16067264 ACGCTCGTTTCGTTTGTTGACTTAGGTTTACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
1 ACGCTCGGTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
* **
16067329 TTCCCAGTCTAATATCGGACTGGACCAAGGGTTGTG
66 TTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTG
* *
16067365 ACGCTCGGTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCA
1 ACGCTCGGTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
*
16067430 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTG
66 TTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTG
16067466 CCAGCACATG
Statistics
Matches: 90, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 90 1.00
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (101 bp):
ACGCTCGGTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
TTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTG
Found at i:16069169 original size:26 final size:26
Alignment explanation
Indices: 16069140--16069192 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16069130 GTTGACTTAG
**
16069140 GCATACGAAGTTTTTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
16069166 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16069192 G
1 G
16069193 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16069356 original size:877 final size:883
Alignment explanation
Indices: 16068232--16075256 Score: 8602
Period size: 877 Copynumber: 7.9 Consensus size: 883
16068222 CCGACAGAGC
* * *
16068232 GCGCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCTTTCCCAGTCTAAGCATACGG
1 GCGC-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGG
* *
16068297 AGTTCATTCCCAGTCTAAGATCGGACCGGACTAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCA
65 AGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * *
16068362 TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACGATCGTCGGAGCATTACCGGAGAACCTGACC
130 TGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
* * * * *
16068427 GGCGGCATTGGGGTTCTGACGATCG-GGAAGGCCGGGGGGTGTGTGTACATGATGTGCGATGGGT
195 GACGGCATTGGGGTTCCGACGATCGAGG-GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
16068491 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
259 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
16068556 AAAGAGCATTTGAGATTTTACAGTTTTGCTGCCGGTAGCCATTAAAGTGTTTGAAATGGGGACAC
324 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
16068621 TTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCC
389 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
16068686 AACAAAAATACGAGGATCACGTCTACCAAGTTTGGCGCCAAAACTCCTTCCAAAAAAATTTTAAA
454 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
* * * * *
16068751 AAATCTCGAACCGCAAAAAGTTTCCAAAATCGTGAAAAGTAGAAAACGAGTCATCTTGCCATGAA
519 AAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
16068816 ACTTCACGTGAAGGCTTATGGGACCATTGTATGAATTTAAAAGCCATAAAAACGGCATTGGCATG
584 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * * *
16068881 CAGAAATGTCAAGATATGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCAT
649 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* *
16068946 CTCTCAGGCCGGCGTAGTGCCCACCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
714 CTCTCAGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * *
16069011 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTACGACAACAGGATCGACAGCAC
779 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGGCAGCAC
*
16069076 GTAGAGGGGTACCCGACCGATCCCCGAATGAG-C-G-T-A
844 GTAGAGGGGGACCCGACCGATCCCCGAATGAGCCGGCTGA
**
16069112 -CGCC-CGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTTTTTCCCAGTCTAAGCATACGGA
1 GCGCCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGA
* * * *
16069175 GTTCATTGCCAGTCTAAGATCGGACCAGACCCAGGGTTACGGCAGCACATGCTGGGCTCGGGCAT
66 GTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
*
16069240 GTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAACG
131 GTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCG
*
16069305 ACGGCATTGGGGTTCCGACGATCGAGAGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
196 ACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
16069370 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACATCCTCTTAA
261 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
16069435 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGAGGACACTT
326 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
16069500 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
391 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * * * *
16069565 AAAAAATACAAGGATCACATCTTCGAAATTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAA
456 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
*** * * * *
16069630 ATGTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGGGTCGTCTTGCCATGAAAC
521 ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
16069695 CTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATCCA
586 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
*
16069760 GAAATAGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
651 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * * * *
16069825 CTCTGGCC-AGCGTAGTGCCCGCCCGCCCTCCCGCCCACTGGTTTTGTTGGTTGGCTTAGGCATA
716 CTCAGGCCGA-CGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * * *
16069889 TGAAGTTCATTCCCAGCCTAAGATCGGACCAGA-CTGAGGGTTGC-AGCAGTAGGATCGGCAGTA
780 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGA-CAGCAGGATCGGCAGCA
* * ** *
16069952 CGCAGAGGGGTACCCGACCGATCCCCGGCTGAG-C--AT-A
843 CGTAGAGGGGGACCCGACCGATCCCCGAATGAGCCGGCTGA
* * *
16069989 -CG-CACGCTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCTCAGTCTAAGCATACGAA
1 GCGCCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGA
*
16070052 GTTCATTCCCAGTCTAAGATCGGATCGGA-CAGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
66 GTTCATTCCCAGTCTAAGATCGGACCGGACCA-AGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * *
16070116 TGTGCTGGTGCCACATTTTTCTTCGTC-GGG-------G-C-GA-CATCGCCGGAGAACCTAACC
130 TGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
* * * *
16070170 GACGGCATTGGGGTTCCGATGTTCGGGGGGGCCGGGGGGTGTGCGCGCATGATGTGCGATGGGTG
195 GACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
16070235 CTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
260 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
16070300 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGAGGACAC-
325 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
16070364 TTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCTTGCCA
390 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
16070429 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAATAATTTTAAAA
455 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
* *
16070494 AATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAA
520 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
16070559 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAACGGCATTGGCATGC
585 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * * * *
16070624 AGAAATGTCAAGATATGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCATC
650 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
16070689 TCTCAGGCCGGCGTAGTGCCCACCCACCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
715 TCTCAGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * *
16070754 CGGAGTTCATTCCCAGTCTAAGATTAGACCAGA-CTGAGGGTTGC-AGTAGTAGGATCGGCAGCA
780 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGA-CAGCAGGATCGGCAGCA
** *
16070817 CGTAGAGGGGGACCCGGTCGATCCCCAGCTTGAGCATCTCACCCCTCTGGCCGGCTGA
843 CGTAGAGGGGGACCCGACCGAT-CCC--C--GA--A--TGA--------GCCGGCTGA
* * * * * *
16070875 GTCCCACACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACA
1 G-CGC-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACG
* * * * ** * *
16070940 GAGTTCAATCCTAGTCTAAGATCAGACCGGATCAAGGGTTATGGCAGCAAATGTTGGGCTCGGGC
64 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * *
16071005 ATGTGCTGGTGCCGCATCTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGAC
129 ATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
* * * * * * *
16071070 CGGCGGCATTGGGGTTCTGGCGGTCGGGGGGGCCGGGGGGTGTGCACACATGATATGCGATGGGT
194 CGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
16071135 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
259 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
16071200 AAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCAGAAATGAGGACAC
324 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
16071265 TTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCC
389 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * * * *
16071330 AACAAAAACAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTTCAAAAAAGAATTTAAA
454 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA-AATTTTAA
* * *
16071395 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTTGTCTTGCCATGA
518 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* **
16071460 AACTTCACGTGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTGTTGGCAT
583 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
16071525 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGTGCATCCCA
648 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* ** * * *
16071590 CCTCTCTA-GCCGACGTAGTGCCCGCCCACCCATCCGCTCTCTCGTTTTC-TCAGTTGGCTTAGG
713 TCTCTC-AGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGCTCG-TTTCGTCGGTTGGCTTAGG
* * * * * *
16071653 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGACGATTGTGGCAGCAGGATCGGCAG
776 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGGCAG
* * * *
16071718 CACGTAGAGGGGGACCTGGCCGATCCCTGACTTGCGTATCCCGCCCCTCTGGCTGGCTGA
841 CACGTAGAGGGGGACCCGACCGATCCCCGA-AT--G-A----G-----C---C-GGCTGA
* *
16071778 GCGCCCGTACGCTCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
1 GCG-CC--ACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATAC
* * * * * *
16071843 GGAGTTCATTCCCAGTCTAAGATTGGACTGGACCAAGGGTTGCGGTAGCACATTCCGGGCTCGAG
63 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * * * *
16071908 CATGTGCTAGTGCCTCATTTTTCTTCATCGGGGCACCATCGTCGAAGCATCGCTGGAGCACCTGA
128 CATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGA
* * * * *
16071973 TCGACAGTATTGGGGTTCCGATGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGCGC-AGTGG
193 CCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA-TGG
* *
16072036 TTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
257 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
16072101 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
322 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
16072166 CCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATG
387 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * * *
16072231 CCAAAAAAAATACAAAGATTAGGTCTACCAAGTTTGGGGCCAGAACTCATTCCAAAAAAATTTTT
452 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
* ** * *
16072296 AAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATGGAAAACGAGTCATCTTGCCATG
517 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
16072361 AAACTTGACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
582 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** * * *
16072426 CACAGAAACATGAAGATGTGCCTAAACCCACCAACCA-TCTATCGATCCACGGCTTGCGCATCCC
647 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * *
16072490 GTCTCTCTA-GTCGACGTAGTGCCCGCCCGCCCGTCCTCCCGCTCGTTTCGTTGGTTGGCTTAGG
712 GTCTCTC-AGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * *
16072554 CATACGGAGTTCATTACCAGTCTAAGATCAGATCGGAGT-GAGGGTTGC-AGCAGCAGGATCAGT
776 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TCGAGGGTTGCGA-CAGCAGGATCGGC
* *
16072617 AGCACGTAGAGGGGGACCCGACTGATCCCCGACTTGTGCATCCCGCCCCTTTGGCCGGCTGA
839 AGCACGTAGAGGGGGACCCGACCGATCCCCGA-------AT---G-------AGCCGGCTGA
* *
16072679 GCGCCCGCACGCTCGTTGCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
1 GCG--C-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATAC
* * * * * * *
16072744 AGAGGTCATTCTCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
63 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * *
16072809 CATGTGCTGGTGCCGCACTTTTCTTCATCGGGGCACCATCGACAGAGCATCACCGGAGAACCTGA
128 CATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGA
* * *
16072874 CCGGCGGCATTGGGGTTCCGACGATGGA-GGGGCCAGGGGGTGGTGTACGCACATGATGTGCGAT
193 CCGACGGCATTGGGGTTCCGACGATCGAGGGGGCC--GGGG-GGTGTGCGCACATGATGTGCGAT
** *
16072938 GGGTGCTGGTACTTGGTGCTTATATTGGCCCCCTATCGCTCATCAAACCTCGAGAACTCACACCC
255 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
16073003 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAAATGGGG
320 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * * *
16073068 GCACATTTTTCAAATGGTCACAGAATCTTATACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCA
385 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* ** * *
16073133 TGCCAACAAAAATACAAGGATCGTGTCTACTAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTT
450 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
* ** ** *
16073198 TAAAAAATCCTGAACCGTAAAACTTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCA
515 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
16073263 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGG
580 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*** * * * * *
16073328 CACATAGAAATATGTAGATGTCCCCAAACACACCTACCACCCTATAGATCCACGGCTTGCGCATC
645 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * *** * *
16073393 CTGTCTCTCTGGCCGATGTAGTGCCCGTCTGTCCGCCCGCCCGCTCATTTCGTTGGTTGGCTTAG
710 CCGTCTCTCAGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * ** * *
16073458 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGTAGGATTGGCA
775 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGGCA
* * * * *
16073523 GCACGCAGAGGGGGACCCGACCGTTCCTCGGTTTACGCATCCCGCCCCTCTGGTCGGCTGA
840 GCACGTAGAGGGGGACCCGACCGATCC-C------CGAAT---G-------AGCCGGCTGA
* * * * * * * * * * * *
16073584 GCACCCGCACGCCCATTTTGCGGGTTCACTTAGGCATACGGAGTTTATTTCTC-GCCTAGGAATA
1 G--CGC-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCA-TTCCCAGTCTAAGCATA
* * *
16073648 CGGAGTTCATTCTCAGTCTAAGATCGGATC-GATCCAAGGGTTGCGACAGCACATGCTGGGCTCG
62 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CCAAGGGTTGCGGCAGCACATGCTGGGCTCG
* * * * * **
16073712 GGCATGTGCTGGTGCCGCATTTTTATTCACCGGGGCACCATCGTTGGAGGATCGCCAAAGAACCT
126 GGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCT
* * * *
16073777 GACCGACAGCATTGGGGTTCCGGCGATCGAGGGGGCCGAGGGGTGTGCTCACATGATGTGCGATG
191 GACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* * *
16073842 GGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAGCCTCGAGAACTCACACCCC
256 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
16073907 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGA
321 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
16073972 CACTTTTTTCAAATGGTCACAAAATCTTGTACAC-T----TTTTT-CCTGAATTTTTTTGTGCAT
386 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * * *
16074031 TCCAACAAAAATACAAGGATCACGTCCACCATGTTTGGGGCCAAAATTCCATT-CGAAAAAATTT
451 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAAATTT
* * *
16074095 TAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCCTCTTGCCA
515 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
**
16074160 TGAAACTTCACGTGAAGGCTTAAGGTTCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
580 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * *
16074225 CACGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATGCATGGCTTGCGCATC
645 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * ** * * *
16074290 CTGCCTCTTTGGTCGACGTAGTGCCCG----CCCGCCCGCCCGCTTGTTTCGTCGATTGGCTTAG
710 CCGTCTCTCAGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * *
16074351 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAAGGTTGCGACAGCAAGATCGGCA
775 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGGCA
* * * *
16074416 GCACGCAGAGGGGGACCCGATCGATCCCACGCTTACGCATCCCACCCCTCGGGCCGACTGA
840 GCACGTAGAGGGGGACCCGACCGAT--C-C-C---CG-A----A----T-GAGCCGGCTGA
* * * * *
16074477 GTGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATAC-AGAGTTCATTACCAGTATAAGCAAA
1 --GCGC-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCATA
* * * * * ** * *
16074541 CAGAGTTCATTCCCAGTCTAGGATCGGACTGGGCCGAGGGTTAAGACAGCACATGCTGGGCTTGG
62 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGG
* *
16074606 GCGTGTGCTGGTGCCACA---TT-TT--T--------C-T--T-----CAT---CGGAGAACCTG
127 GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTG
* * * * * *
16074646 ACCGACAGCATTAGGGTTACGACGATAGAGGGGGCCTGCGGGGTGTGTGCACATGATGTGCGATG
192 ACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATG
* * *
16074711 GGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTTACACCCC
256 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
16074776 CTTAAAGAGCATTTGAGATTTAACAGGTTTGCTGCTAGTAGCCATGAAAGTGTCTGAAATGGGGA
321 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
16074841 CACTTTTTTCAAATGGTCCCAAAATCTTGTACACTACGAGTTTTTAGCTGAATTTTTTTGTGCAT
386 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
16074906 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTTCAAAAAAATTTT
451 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
* * * *
16074971 AAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCAT
516 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
16075036 GAAACATCACGTGAAGGCTTAAGGGACCATAGTATGAATTTACAAGCCATAAAAATGGCATTGGC
581 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
16075101 AAGCAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCTCGGCTTGCGCATCC
646 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * *
16075166 CGTCTCTCTA-GCCGACATAGT----GCCCACCCGCCCGTCAGCTTGTTTTGTCGGTTGGCTTAG
711 CGTCTCTC-AGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
16075226 GCATACGGAGTTCATTCCCAGTCTAAGATCA
775 GCATACGGAGTTCATTCCCAGTCTAAGATCA
16075257 AACTTGATTG
Statistics
Matches: 5375, Mismatches: 633, Indels: 279
0.85 0.10 0.04
Matches are distributed among these distances:
865 427 0.08
866 206 0.04
867 2 0.00
868 43 0.01
869 179 0.03
870 1 0.00
871 3 0.00
874 9 0.00
875 325 0.06
876 8 0.00
877 923 0.17
878 3 0.00
879 4 0.00
882 1 0.00
883 1 0.00
885 1 0.00
886 1 0.00
888 1 0.00
889 2 0.00
890 133 0.02
891 5 0.00
892 3 0.00
893 232 0.04
894 4 0.00
895 3 0.00
896 2 0.00
897 268 0.05
898 12 0.00
899 2 0.00
900 8 0.00
901 552 0.10
902 275 0.05
903 763 0.14
904 596 0.11
905 357 0.07
906 11 0.00
907 3 0.00
908 2 0.00
910 1 0.00
912 2 0.00
914 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (883 bp):
GCGCCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGA
GTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
GTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCG
ACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCAGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGGCAGCACGT
AGAGGGGGACCCGACCGATCCCCGAATGAGCCGGCTGA
Found at i:16070053 original size:26 final size:26
Alignment explanation
Indices: 16070017--16070069 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16070007 GTTGACTTAG
*
16070017 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16070043 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16070069 G
1 G
16070070 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16070943 original size:26 final size:26
Alignment explanation
Indices: 16070907--16070959 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16070897 GTTGACTTAG
* * *
16070907 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
*
16070933 GCATACAGAGTTCAATCCTAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
16070959 G
1 G
16070960 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:16071840 original size:26 final size:26
Alignment explanation
Indices: 16071811--16071863 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16071801 GTTGACTTAG
16071811 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16071837 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16071863 G
1 G
16071864 ATTGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16072752 original size:26 final size:26
Alignment explanation
Indices: 16072712--16072764 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16072702 GTTGACTTAG
* *
16072712 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGGTCATTCCCAGTCTAA
*
16072738 GCATACAGAGGTCATTCTCAGTCTAA
1 GCATACAGAGGTCATTCCCAGTCTAA
16072764 G
1 G
16072765 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGGTCATTCCCAGTCTAA
Found at i:16072785 original size:901 final size:899
Alignment explanation
Indices: 16069116--16075256 Score: 7871
Period size: 903 Copynumber: 6.9 Consensus size: 899
16069106 AGCGTACGCC
* * ** *
16069116 CGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTTTTTCCCAGTCTAAGCATACGGAGTTCAT
1 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
* ** * * *
16069181 TGCCAGTCTAAGATCGGACCAGACCCAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTG
66 TCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
* * *
16069246 GTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAACGACGGCA
131 GTGCCGCATTTTTCTTCATCGGGGCACCATCG-CGAAGCATC-CCGGAGAACCTGACCGACAGCA
*
16069311 TTGGGGTTCCGACGATCGAGAGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
194 TTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
16069376 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACATCCTCTTAAAGAGCA
258 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
16069441 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGAGGACACTTTTTTCA
323 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
16069506 AATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
388 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* * * * * * ***
16069571 TACAAGGATCACATCTTCGAAATTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATGTTG
453 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCG
* * * * *
16069636 AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGGGTCGTCTTGCCATGAAACCTCACG
518 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
16069701 TGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATC-CAGAAAT
583 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-CACAGAAAT
* *
16069765 AGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
647 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTA
* * * * * * *
16069830 GCC-AGCGTAGTGCCCGCCCGCCCTCCCGCCCACTGGTTTTGTTGGTTGGCTTAGGCATATGAAG
712 GCCGA-CGTAGTGCCCGCCCGCCC-GCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * *
16069894 TTCATTCCCAGCCTAAGATCGGACCAGACTGAGGGTTGCAGCAGTAGGATCGGCAGTACGCAGA-
775 TTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGTAGAG
***
16069958 -GGG----G--T-A--CCCGAC---CG-AT-------C-C---CCGGCTGAGCATACGCA
840 GGGGACCCGACTGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
** * *
16069993 CGCTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCTCAGTCTAAGCATAC-GAAGTTCA
1 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG-AGTTCA
*
16070057 TTCCCAGTCTAAGATCGGA-TCGGA-CAGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
65 TTCCCAGTCTAAGATCGGACT-GGACCA-AGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG
* * * *
16070120 CTGGTGCCACATTTTTCTTCGTC-GGG-------GCG-A-CATCGCCGGAGAACCTAACCGACGG
128 CTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCGAAGCATC-CCGGAGAACCTGACCGACAG
* * *
16070175 CATTGGGGTTCCGATGTTCGGGGGGGCCGGGGGGTGTGCGCGCATGATGTGCGATGGGTGCTGGT
192 CATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
16070240 ACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
256 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
16070305 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGAGGACAC-TTTTT
321 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
16070369 GAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCTTGCCAAAAAA
386 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* *
16070434 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAATAATTTTAAAAAATCC
451 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
* *
16070499 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
516 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * **
16070564 CGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAACGGCATTGGCATGCAGAAA
581 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
* * * * *
16070629 TGTCAAGATATGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCATCTCTC-
646 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
16070693 AGGCCGGCGTAGTGCCCACCCACCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
711 A-GCCGACGTAGTGCCCGCCCGCCC-GCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * *
16070758 GTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTGCAGTAGTAGGATCGGCAGCACGTAGA
774 GTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGTAGA
* * * * * *
16070823 GGGGGACCCG-GTCGATCCCC-AGCTTGAGCATCTCACCCCTCTGGCCGGCTGAG-TCCCACA
839 GGGGGACCCGACT-GATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
16070883 CACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACAGAGTTCAA
1 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
* * * * ** * * *
16070948 TCCTAGTCTAAGATCAGACCGGATCAAGGGTTATGGCAGCAAATGTTGGGCTCGGGCATGTGCTG
66 TCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * *
16071013 GTGCCGCATCTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGACCGGCGGCA
131 GTGCCGCATTTTTCTTCATCGGGGCACCATCGCGA-AGCATC-CCGGAGAACCTGACCGACAGCA
* * * * *
16071078 TTGGGGTTCTGGCGGTCGGGGGGGCCGGGGGGTGTGCACACATGATATGCGATGGGTGCTGGTAC
194 TTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
16071143 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
258 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * *
16071208 TTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCAGAAATGAGGACACTTTTTTCA
323 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * *
16071273 AATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAA
388 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* * * * * * *
16071338 CAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTTCAAAAAAGAATTTAAAAAAATCTC
453 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA-AATTTTAAAAAATCCC
* *
16071403 GAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCAC
517 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* ** **
16071468 GTGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTGTTGGCATGCAGAAAT
582 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAAT
* * **
16071533 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGTGCATCCCACCTCTCTA
647 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTA
* * * * * *
16071598 GCCGACGTAGTGCCCGCCCACCCATCCGCTCTCTCGTTTTC-TCAGTTGGCTTAGGCATACGAAG
712 GCCGACGTAGTGCCCGCCCGCCC-GCCGCCCGCTCG-TTTCGTCGGTTGGCTTAGGCATACGGAG
* * * **
16071662 TTCATTCCCAGTCTAAGATCAGACCGGACCGACGATTGTGGCAGCAGGATCGGCAGCACGTAGAG
775 TTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGTAGAG
* * * * * * *
16071727 GGGGACCTGGCCGATCCCTGACTTGCGTATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTA
840 GGGGACCCGACTGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
16071787 CGCTCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
1 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
* ** * * * *
16071852 TCCCAGTCTAAGATTGGACTGGACCAAGGGTTGCGGTAGCACATTCCGGGCTCGAGCATGTGCTA
66 TCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * *
16071917 GTGCCTCATTTTTCTTCATCGGGGCACCATCGTCGAAGCATCGCTGGAGCACCTGATCGACAGTA
131 GTGCCGCATTTTTCTTCATCGGGGCACCATCG-CGAAGCATC-CCGGAGAACCTGACCGACAGCA
* * *
16071982 TTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGCGC-AGTGGTTGCTGGTAC
194 TTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA-TGGGTGCTGGTAC
*
16072046 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
258 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
16072111 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACCCTTTTTTCA
323 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
16072176 AATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
388 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* * * * * * *
16072241 TACAAAGATTAGGTCTACCAAGTTTGGGGCCAGAACTCATTCCAAAAAAATTTTTAAAAATCCCA
453 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCG
** * * *
16072306 AACCGTAAAAAGTTTTGAAAATCGTGAAAAATGGAAAACGAGTCATCTTGCCATGAAACTTGACG
518 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
16072371 TGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAACA
583 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATA
* *
16072436 TGAAGATGTGCCTAAACCCACCAACCA-TCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAG
648 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAG
* * *
16072500 TCGACGTAGTGCCCGCCCGCCCGTCCTCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTT
713 CCGACGTAGTGCCCGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * *
16072565 CATTACCAGTCTAAGATCAGATCGGAGTGAGGGTTGCAGCAGCAGGATCAGTAGCACGTAGAGGG
777 CATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGTAGAGGG
* *
16072630 GGACCCGACTGATCCCCGACTTGTGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCA
842 GGACCCGACTGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
16072688 CGCTCGTTGCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGGTCAT
1 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
* * *
16072753 TCTCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
66 TCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
* * *
16072818 GTGCCGCACTTTTCTTCATCGGGGCACCATCGAC-AGAGCATCACCGGAGAACCTGACCGGCGGC
131 GTGCCGCATTTTTCTTCATCGGGGCACCATCG-CGA-AGCATC-CCGGAGAACCTGACCGACAGC
*
16072882 ATTGGGGTTCCGACGAT-GGAGGGGCCAGGGGGTGGTGTACGCACATGATGTGCGATGGGTGCTG
193 ATTGGGGTTCCGACGATCGG-GGGGCC--GGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTG
** *
16072946 GTACTTGGTGCTTATATTGGCCCCCTATCGCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
254 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
16073011 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAAATGGGGGCACATTT
319 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
16073076 TTCAAATGGTCACAGAATCTTATACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACA
384 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
** * *
16073141 AAAATACAAGGATCGTGTCTACTAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAAT
449 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
* ** ** *
16073206 CCTGAACCGTAAAACTTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTT
514 CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
16073271 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCACATAGA
579 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
* * * * * *
16073336 AATATGTAGATGTCCCCAAACACACCTACCACCCTATAGATCCACGGCTTGCGCATCCTGTCTCT
644 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * * *
16073401 CTGGCCGATGTAGTGCCCGTCTGTCCGCCCGCCCGCTCATTTCGTTGGTTGGCTTAGGCATACGG
709 CTAGCCGACGTAGTGCCCGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * * * *
16073466 AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGTAGGATTGGCAGCACGCAG
773 AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGTAG
* * * ** * * *
16073531 AGGGGGACCCGACCGTTCCTCGGTTTACGCATCCCGCCCCTCTGGTCGGCTGAGCACCCGCA
838 AGGGGGACCCGACTGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * * * * * * * *
16073593 CGCCCATTTTGCGGGTTCACTTAGGCATACGGAGTTTATTTCTC-GCCTAGGAATACGGAGTTCA
1 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TTCCCAGTCTAAGCATACAGAGTTCA
* *
16073657 TTCTCAGTCTAAGATCGGA-TCGATCCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGC
65 TTCCCAGTCTAAGATCGGACTGGA-CCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGC
* * * * * **
16073721 TGGTGCCGCATTTTTATTCACCGGGGCACCATCGTTGGAGGATCGCCAAAGAACCTGACCGACAG
129 TGGTGCCGCATTTTTCTTCATCGGGGCACCATCG-CGAAGCATC-CCGGAGAACCTGACCGACAG
* * * *
16073786 CATTGGGGTTCCGGCGATCGAGGGGGCCGAGGGGTGTGCTCACATGATGTGCGATGGGTGCTCGT
192 CATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
16073851 ACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAGCCTCGAGAACTCACACCCCCTTAAAGAG
256 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
16073916 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTT
321 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
16073981 CAAATGGTCACAAAATCTTGTACAC-T----TTTTT-CCTGAATTTTTTTGTGCATTCCAACAAA
386 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* * * *
16074040 AATACAAGGATCACGTCCACCATGTTTGGGGCCAAAATTCCATT-CGAAAAAATTTTAAAAAATC
451 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAAATTTTAAAAAATC
* * *
16074104 CCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCCTCTTGCCATGAAACTTC
515 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
** **
16074169 ACGTGAAGGCTTAAGGTTCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAA
580 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
* * * * * *
16074234 ATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATGCATGGCTTGCGCATCCTGCCTCTT
645 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * *
16074299 TGGTCGACGTAGTGCCCGCCCG--C-CCGCCCGCTTGTTTCGTCGATTGGCTTAGGCATACGGAG
710 TAGCCGACGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * *
16074361 TTCATTCCCAATCTAAGATCAGACCGGA-TCGAAGGTTGC-GACAGCAAGATCGGCAGCACGCAG
775 TTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCAG-CAGCAGGATCGGCAGCACGTAG
* * * * * *
16074424 AGGGGGACCCGA-TCGATCCCACG-CTTACGCATCCCACCCCTCGGGCCGACTGAGTGCCCACA
838 AGGGGGACCCGACT-GATCCC-CGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * *
16074486 CGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTACCAGTATAAGCAAACAGAGTTCAT
1 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
* * * ** * *
16074551 TCCCAGTCTAGGATCGGACTGGGCCGAGGGTTAAGACAGCACATGCTGGGCTTGGGCGTGTGCTG
66 TCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
*
16074616 GTGCCACA--TTT-TTC-T----------T-------CAT--CGGAGAACCTGACCGACAGCATT
131 GTGCCGCATTTTTCTTCATCGGGGCACCATCGCGAAGCATCCCGGAGAACCTGACCGACAGCATT
* * * * *
16074658 AGGGTTACGACGATAGAGGGGGCCTGCGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACT
196 GGGGTTCCGACGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * *
16074723 TGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTTACACCCCCTTAAAGAGCAT
259 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * *
16074788 TTGAGATTTAACAGGTTTGCTGCTAGTAGCCATGAAAGTGTCTGAAATGGGGACACTTTTTTCAA
324 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
16074853 ATGGTCCCAAAATCTTGTACACTACGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
389 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
* * *
16074918 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTTCAAAAAAATTTTAAAAAATCCCAA
454 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGA
* * * *
16074983 ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACATCACGT
519 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
*
16075048 GAAGGCTTAAGGGACCATAGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-AGCAGAAATA
584 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA-CAGAAATA
* *
16075112 TGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCTCGGCTTGCGCATCCCGTCTCTCTAG
648 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAG
* * * * * *
16075177 CCGACATAGTGCCCACCCG--C-CCGTCAGCTTGTTTTGTCGGTTGGCTTAGGCATACGGAGTTC
713 CCGACGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
16075239 ATTCCCAGTCTAAGATCA
778 ATTCCCAGTCTAAGATCA
16075257 AACTTGATTG
Statistics
Matches: 4620, Mismatches: 557, Indels: 176
0.86 0.10 0.03
Matches are distributed among these distances:
865 412 0.09
866 202 0.04
867 5 0.00
868 43 0.01
869 179 0.04
871 3 0.00
872 1 0.00
874 8 0.00
875 330 0.07
876 9 0.00
877 134 0.03
879 2 0.00
880 2 0.00
887 1 0.00
888 1 0.00
890 134 0.03
891 18 0.00
892 4 0.00
893 241 0.05
894 4 0.00
895 1 0.00
897 269 0.06
898 9 0.00
900 8 0.00
901 575 0.12
902 265 0.06
903 784 0.17
904 598 0.13
905 366 0.08
906 11 0.00
907 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
TCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
GTGCCGCATTTTTCTTCATCGGGGCACCATCGCGAAGCATCCCGGAGAACCTGACCGACAGCATT
GGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCG
ACGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGTAGAGGGGGAC
CCGACTGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
Found at i:16076144 original size:26 final size:26
Alignment explanation
Indices: 16076104--16076155 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16076094 TTGACTTAGC
*
16076104 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTACATTCCCAGTCTAAG
16076130 CATACGGAGTACATTCCCAGTCTAAG
1 CATACGGAGTACATTCCCAGTCTAAG
16076156 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTACATTCCCAGTCTAAG
Found at i:16077044 original size:26 final size:26
Alignment explanation
Indices: 16077008--16077059 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
16076998 TTGACTTAGC
16077008 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
16077034 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
16077060 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:16078273 original size:902 final size:904
Alignment explanation
Indices: 16075226--16078356 Score: 4606
Period size: 904 Copynumber: 3.5 Consensus size: 904
16075216 GTTGGCTTAG
* ** ** ** *
16075226 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACTTGATTGAGGGTTGTG-GAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGG
* * * *
16075290 CTCGGGCATGTGCTGGTGCCGCATTTTCCTTCACTGGGGCACCATTGCC-AGACCATCG-TCGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGA-AGCATCGCT-GGA
* * * * *
16075353 GAACCTGACGGGCGACATTGGGATTCCGACAATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* *
16075418 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
16075483 AAACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
* * *
16075548 ATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAACTGAATGTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
16075613 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCC-TCCGAA
389 TGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA-TCCCTTTCGAA
* * *
16075677 AAAATTTAAAAAAATCTTGTATCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGT
453 AAAATTTAAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGT
16075742 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
16075807 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
583 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
16075872 GTGCATCCCGTCTCTCTTGCTGGAGTAGTGCCCGCCCGCCCGCACGCCCGTTCGTTTTGTCAGTT
648 GTGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCACGCCCGCTCGTTTCGTCAGTT
** *
16075937 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAATATTGGACCGGACCGAGGGTTGCAGCAGCAGG
713 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAATATCAGACCGGACCGAGGGTTGCAGCAGTAGG
* **
16076002 ACTGGTAGCACGCAGAGGGGGACTCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGC
778 ATTGACAGCACGCAGAGGGGGACTCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGC
*
16076067 TGAGCAACCGCACGCTCATTTCGTGGGTTGACTTAGCCATACGGAGTTCATTCCCAGTCTAA
843 TGAGCAACCGCACGCTCATTTCGTGGGTTGACTTAGCCATACAGAGTTCATTCCCAGTCTAA
* * * *
16076129 GCATACGGAGTACATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGACAGCACATGTTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGG
* * * * ** * *
16076194 CTTGGGCATGTGTTGGTGCCACATTTTTCCTCGTCGGGGCACCATCGCCGAAGTATTGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGAAGCATCGCTGGAGA
16076259 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
16076324 CGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
16076389 TCCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* ** * * ** *
16076454 GGGGACACTTTTTTGAAACAGTCACAAAATCTTGTTCACTTTGAGTTTTTAGCTGAATTGCTTTA
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
16076519 TGCATGCCAAAAAAAATACAAGGATCATGTCTGCCAAGTTTGGGGCC-AAATCTCCTTTCGAAAA
391 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAATC-CCTTTCGAAAA
* ** *
16076583 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCT
455 AATTTAAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCT
* * * * *
16076648 TGCAATGAAACTACACATGAAGGATTAAGGGACCATTGTATGAATCTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
16076713 ATTGGCATGCAAAAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
585 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGT
* * * *
16076778 GCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCTCGCGCGCTCGCTCGTTTCGTCTGTTGG
650 GCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCACGCCCGCTCGTTTCGTCAGTTGG
* * *
16076843 CTTAGGCATATGGAGTTCATTCCCAGTCTAATATCAAACTGGACCGAGGGTTGCAGCAGTAGGAT
715 CTTAGGCATACGGAGTTCATTCCCAGTCTAATATCAGACCGGACCGAGGGTTGCAGCAGTAGGAT
* * **
16076908 CGACAGCACGTAGAGGGGGACTCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTG
780 TGACAGCACGCAGAGGGGGACTCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTG
* *
16076973 AGTAACCGCACGCTCGTTTCGTGGGTTGACTTAGCCATACAGAGTTCATTCCCAGTCTAA
845 AGCAACCGCACGCTCATTTCGTGGGTTGACTTAGCCATACAGAGTTCATTCCCAGTCTAA
* * *
16077033 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCACATGTTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGG
* * * * * *
16077098 CTTGGGCATGTGTTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGAAGCATTGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGAAGCATCGCTGGAGA
* * *
16077163 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCCGAGGGGTGTGCGCACATAATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
16077227 CGATGGATGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
16077292 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
*
16077357 GGGGACACTTTTTTCAAATGTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
16077422 TGCATGCCAAAAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAATCCCTTTTGAAAAA
391 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAATCCCTTTCGAAAAA
* * * *
16077487 ATTTAAAAAAATCTTGAACCGCAAAAATTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
456 ATTTAAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTT
* *
16077552 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGAATGAATTTACAAGCCATAAAAACGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
16077617 TTGGCACGTAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGGTTGTG
586 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTG
* * * * * * * *
16077682 CATTCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCCCGCCCGCACGTTTCCTCGGTTAGC
651 CATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCACGCCCGCTCGTTTCGTCAGTTGGC
* * * * *
16077747 TTAGGGATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TGAGGGTTGCGGTAGTAGGATT
716 TTAGGCATACGGAGTTCATTCCCAGTCTAATATCAGACCGGACCGAGGGTTGCAGCAGTAGGATT
* * * * *
16077811 GACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCTCCCCTCTAGCCGGCTGA
781 GACAGCACGCAGAGGGGGACTCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGA
* * ** *
16077876 GCACCCGCACGCTCATTTCGTGGGATGACTTAGGGATACAAAGTTCATTCCCAGTC-AA
846 GCAACCGCACGCTCATTTCGTGGGTTGACTTAGCCATACAGAGTTCATTCCCAGTCTAA
* * * * * ** *
16077934 GCATACATAATTCATTCCCAGCCTAAGATCGGACCGGACAGAGGGTTGCGGTAGCACACGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGG
* ** *
16077999 CTCGGGCATGTGCTGATGCCGCATTTTTCTTCACCGGGAAACCATCGCCGGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGAAGCATCGCTGGAGA
* * ** *
16078064 ACTTGACCGACGGCATTGGGGTTTCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGAG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
16078129 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
16078194 ACCCCCTTAATGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTAAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* * *
16078259 GGGGACACTTTTTTCAAATGGTCATAAAATCTTGTATAGTTC-ACGTTTTTAGCTGAATTTTTTT
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTTTTTT
* *
16078323 GCGCATGCCAATAAAAATACAAGGATCATGTCTA
390 GTGCATGCCAAAAAAAATACAAGGATCATGTCTA
16078357 AAATGTTTCA
Statistics
Matches: 1991, Mismatches: 229, Indels: 17
0.89 0.10 0.01
Matches are distributed among these distances:
901 140 0.07
902 363 0.18
903 575 0.29
904 911 0.46
905 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (904 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGAAGCATCGCTGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAATCCCTTTCGAAAAA
ATTTAAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTG
CATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCACGCCCGCTCGTTTCGTCAGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAATATCAGACCGGACCGAGGGTTGCAGCAGTAGGATT
GACAGCACGCAGAGGGGGACTCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGA
GCAACCGCACGCTCATTTCGTGGGTTGACTTAGCCATACAGAGTTCATTCCCAGTCTAA
Found at i:16078572 original size:12 final size:12
Alignment explanation
Indices: 16078555--16078580 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
16078545 CCGACGTAGT
16078555 GCCCTCCCGCCC
1 GCCCTCCCGCCC
16078567 GCCCTCCCGCCC
1 GCCCTCCCGCCC
16078579 GC
1 GC
16078581 TCCTTTCATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.73, G:0.19, T:0.08
Consensus pattern (12 bp):
GCCCTCCCGCCC
Found at i:16078791 original size:26 final size:26
Alignment explanation
Indices: 16078761--16078813 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16078751 GTTGACTTAG
*
16078761 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16078787 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16078813 G
1 G
16078814 ATTGTACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16080977 original size:897 final size:895
Alignment explanation
Indices: 16078355--16084300 Score: 7470
Period size: 897 Copynumber: 6.6 Consensus size: 895
16078345 GGATCATGTC
* *
16078355 TAAAATGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAG
1 TAAAAAGTTTC-AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
16078420 GCTTATGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCGCACAGAAATATGAAG
65 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAG
* **
16078485 ATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATTTCGTCTCTCTGGCCGAC
130 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * *
16078550 GTAGTGCCCTCCCGCCCGCCCTCCCGCCCGCTCCTTTCATCAGTTGGCTTAGGCATACGGAGTTC
195 GTAGTG----CCCGCCCG---T-----CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * *
16078615 ATTCCTAGTCTAAGATTGGACCGGACCGAGGGTT--ATGACAGTAAGATCGGCAGAATGTAGAGG
248 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCA-G-CAGCAAGATCGGCAGCATGCAGAGG
* * * * *
16078678 GGGACCCGATCGATCCCCAGCTTGCACATCCCACCCCTCTGGCCGGTTGAGCGCCCGTACGCTTG
311 GGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCGCCCGCACGCTCG
* * * *
16078743 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCAG
376 TTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAA
* * * * ** * * * *
16078808 TCTAAGATTGTACCAGACCAAGGGTTACAACAGCACATGCTGGGCTTGGGCATGTTCTGGTGTCA
441 TCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * ** * * *
16078873 CATTTTTCTTCGTC-GGGTACCA-CACCGGAGCATGGTCGGATAACCTGACCGGCGGCATTGGGG
506 TATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGG
* *
16078936 TTCCGACGATCGGAAGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACATGGC
571 TTCCGACGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
16079000 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGA
636 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
16079065 GATTTTACAGGTTTGCTACCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
701 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
16079130 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTT-TGCATGCCAAAAAAAATACA
766 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTTGTGCATGCCAAAAAAAATACA
* * *
16079194 AGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACC
830 AGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACC
16079259 G
895 G
* * *
16079260 TAAAAAGTTTTGAAAATCGTGAAAAATGGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
1 TAAAAAG-TTTCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* ** * **
16079325 GCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATTACACTGGCACGTAGAAATATGAAG
65 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAG
* *
16079390 ATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGAC
130 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* *
16079455 GTAGTGCCCGCCCGCCTGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAG
195 GTAGTGCCCGCCCG--T--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * **
16079520 TCTAAGATCAGACCGGTCCGAGGGTT----------G-T-GGCAGCATGCAGAGGGGGACCCGGT
256 TCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAAGATCGGCAGCATGCAGAGGGGGACCCGAC
* * * * * * * *
16079573 CGATCCCCAGCTTACGCGTCCCACCCCTATGGCCGGTTGAGTGCCCGCACGCTCGTTCCGTAGCT
321 CGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * *
16079638 TGACTTTGGCATAC-GAAGTTCATTCCCAGTGTGAGCATACGGAGTTCATTCCCAATCTAAGATC
386 TGACTTAGGCATACGGAA-TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATC
* * *
16079702 GGACCAGATCGAGGGTTGCGGCAGCGCATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCT
450 GGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCT
* * * ** * * *
16079767 TTACCAGGGCACCATCACCGGAGCATCGTCGAAGAA-CTCGACCGGCGGCATTGGGGTTCCGGCG
515 TCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT-GACCGACGGCATTGGGGTTCCGACG
** * * * **
16079831 ATCGGAGGGGTTGCGGGGGTGAGCGCACATGATGTGAGATGGGTGCTCATACTTGGCCCTTATAT
579 ATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
16079896 TGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAT
644 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* ** *
16079961 AGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGGTACTTTTTTCAAAATGGTCTCAAA
709 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC-AAATGGTCACAAA
* * * * * *
16080026 ATCTTGAACAATTTGAGTTTTTCGGTGAATTTTTTTGTGCATACCAAAAAAAATACAAGGATCAC
773 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
* * *
16080091 GTCTACCAAGTTTGGGGCCAAAACTTCTTCTGAAAAAATTTTAAAAAATCTCGAACCG
838 GTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCG
* *
16080149 TAAAAAGTTTCAAACATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAG
1 TAAAAAGTTTCAAA-ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* ** *
16080214 GCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCACGTAGAAATATAAAG
65 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAG
16080279 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
130 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * * *
16080344 GTAGTGCCCGCCCGTCCGCTCGTTTTGCCGGTTGGCTTAGGCATACGGTGTTCAATCCCAGTCTA
195 GTAGTGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * *
16080409 AGATCGGACCGAACCAAGGGTTGCAGCAGCAAGATCGGCAGCATGCAGAGGGGGACTCGACCGAT
260 AGATCGGACCGGACCGAGGGTTGCAGCAGCAAGATCGGCAGCATGCAGAGGGGGACCCGACCGAT
* * * * *
16080474 CCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCGCACACTCATTTCATGGGTTGAC
325 CCCCGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * * * *
16080539 TTTGGCATACGGAATTCATTGCCAGTCTAAGCATATGGAGTTCATTCCCAACCTAAGATCGGATC
390 TTAGGCATACGGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACC
* * * * *
16080604 AGATCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATATGATGGTGCCGTATTTTTCTTCACC
455 AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATC
* *
16080669 GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGA
520 GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGA
*
16080734 GGGGCCGAGGGGGGTGTGCGCACATGACGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
585 GGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * *
16080799 CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAAGTT
649 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
16080864 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACGTTTTTCAAATGGTCTCAAAATCTTG
714 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * *
16080929 TACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTAC
779 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
* **
16080994 CAAGTTTGGGGCCAAAAATCCTT-TCGAAAAAATTTAAAAAAATCTTGAACCG
844 CAAGTTTGGGGCCAAAAATCCTTCT-GAAAAAATTTTAAAAAATCCCGAACCG
* * * *
16081046 CAAAATGTTTCGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAG
1 TAAAAAGTTTC-AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
16081111 GCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGACATTGGCACACAGAAATATGAAG
65 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAG
* *
16081176 ATGTGCCTCAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-AG
130 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-
* **
16081240 TGTAGTGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
194 CGTAGTGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * *
16081305 AAGATCGGACCGAACCAAAGGTTGCGGCAGCAAGATCGGCAGCATGCAGAGGGGGACCCGACCGA
259 AAGATCGGACCGGACCGAGGGTTGCAGCAGCAAGATCGGCAGCATGCAGAGGGGGACCCGACCGA
* * * * *
16081370 TCCCTGGCTTGCGCATCCCACCCCTCTGGCCAGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGA
324 TCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* *
16081435 CTTAGGCATACGGAATTCATTGCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGAT
389 CTTAGGCATACGGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGAC
* * * * * * * *
16081500 CGGACCGAGGGTTGCAGCAGCACGTGGTGGGCCCAGGCATGTGCTGGTGCCATATTTTTCTTCGT
454 CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCAT
* * * * * * * *
16081565 CGGGGCACCGTCATCGGAGCATCGCCGGACAACCTGACC-TCGGCATTTGGGTTCTGGCGATCGG
519 CGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG
* ** * *
16081629 GGGGGCCGGGGGGGTGTTTGCACATGATGTGCGATGGGTGCCGGTACTTGGCCATTATATTGGCC
584 AGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
** *
16081694 CCCTATATAC-CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
649 CCCTAT-CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
16081758 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTT
713 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
16081823 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACGAGGATCACGTCTA
778 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* ** **
16081888 GCAAGTTTGGGAACAAAACA-CCTTCCAAAAAAATTTTAAAAAATCCCGAACCG
843 CCAAGTTTGGGGCCAAAA-ATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCG
* * *
16081941 CAAAAAGTTTTGAAAATCATGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAG
1 TAAAAAG-TTTCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *** *
16082006 GCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAAAATGGCATTGGCTTGCAAAAATATGAA
65 GCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCACACAGAAATATGAA
* * *
16082071 GATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCATCCCGTATCTTTGGCCGA
129 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
* *
16082136 CGTAGTG-CC-CAC--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCT
194 CGTAGTGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * *
16082197 AGAGATCGGACCGGACTGAAGGTTGCGGCAGCAAGATCGGCAGCACGTAGAGGGGGACCCGACTG
259 A-AGATCGGACCGGACCGAGGGTTGCAGCAGCAAGATCGGCAGCATGCAGAGGGGGACCCGACCG
* * * ** * * *
16082262 ATCCCCGGCATGCACATCCCGCCCCAATGGCCGGTTGAACGCCTGCACGCTTGTTTCGTGGGTTG
323 ATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* *
16082327 ACTTAGGCATAC-GAAGTTCTTTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGACCGG
388 ACTTAGGCATACGGAA-TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGG
* * ** * **
16082391 ACCGGACTGAGGGTTGCGATAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCCCATTTTTCTTC
452 ACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTC
* * * * *
16082456 ATCAGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATC
517 ATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
* * * * *
16082521 GGGGGGGGTC-GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCGTAATATTG
582 -GGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
16082585 GCCCTCTATCCAC-CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
646 GCCCCCTATCC-CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
16082649 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCCCAAAAT
710 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
*
16082714 CTTGTCCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGT
775 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGT
16082779 CTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCG
840 CTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCG
* *
16082835 CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGACGTGACA
1 TAAAAAGTTTC-AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA-A
16082900 -GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
64 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
* * *
16082964 GATGTGCCTAAACCCACCTGCCATCCTATCGATCCACGGCTTGCGCATCCCGTTTCTCTGGCCGA
129 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
* * *
16083029 CGTAGTGCCCACCCGCCCCGCCCAGCCGCACGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCAT
194 CGTAGTG----CCCG-CCCG----TCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * ** * *
16083094 TCCCAGTCTAAGATCGAACCGGACTGATGTTTGCAGTAGCAGGATCAACAGCACGCAGAAGGGGA
250 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAAGATCGGCAGCATGCAGAGGGGGA
* * ** * * * *
16083159 CCTGGA-CGAACCCCAACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGTTCGTTT
315 CC-CGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTT
* * * * *
16083223 CATGGGTTGACCTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCT
379 CGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCT
* * *
16083288 AAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTAT
444 AAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAT
* * *
16083353 TTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGATCGACGGCGTTGGGGTTC
509 TTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTC
* *
16083418 CGACGATCGGAGGGGTCGGGGGGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCCT
574 CGACGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
16083483 TTTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTGACACCCCCTTAAAGAGCATTTGAGAT
639 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * * *
16083548 TTTATAGGTTTACTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCA
704 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * * * * *
16083613 CAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTGTGCATACCAACAAAAGTACAGGGT
769 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGA
* * * * **
16083678 TCACATCTACCAAGTTTGGGGCCAAAACTCCTT-TCAAAAAAATTTT-AATAATCTTGAACCG
834 TCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCT-GAAAAAATTTTAAAAAATCCCGAACCG
* *
16083739 TAAAAAGTTTCAAAAAATCATGAAAAATAGAAAATGAGT-GTGTGTGCCATG-AACTTTCACGTT
1 TAAAAAGTTTC--AAAATCATGAAAAATAGAAAACGAGTCGTCT-TGCCATGAAAC-TTCACG-T
* * * *
16083802 GAAGGCTTAAGGGACCCATTGTA-CAATTTACAAGCC-TAAAAATTGGCATTGGAATGCAAAAAA
61 GAAGGCTTAAGGGA-CCATTGTATGAATTTACAAGCCATAAAAA-TGGCATTGGCA--C-ACAGA
* * *
16083865 AATATGAAGATG-GCCT-AACCCACCTACCACCCGTCTC--TCTA--GC---CG-A---CG--TA
121 AATATGAAGATGTGCCTAAACCCACCTACCACCC-TATCGATCCACGGCTTGCGCATCCCGTCTC
** * * *
16083915 AGT-GCCG-C---CTGCCCGCCC-CCCGCTCGTTATTCGCTCAGTT-GCTTA-GCATACGGAGTT
185 TCTGGCCGACGTAGTGCCCGCCCGTCCGCTCG-T-TTCG-TCGGTTGGCTTAGGCATACGGAG-T
*** * * * ** * * * *
16083972 TGGGTCCCAGTCTAA-ATCACAGACCAGAGCGAGGGTTGGGGCAGCAGGATCGACAGCATCCAAA
246 TCATTCCCAGTCTAAGAT--CGGACCGGACCGAGGGTTGCAGCAGCAAGATCGGCAGCATGC-AG
* * * ** *
16084036 AGGGGGACTCGGCCGATTCCCCGGCTTACGCATCCTTGCCCCT-TGGCCGGTTTGAGCACCCTGT
308 AGGGGGACCCGACCGA-TCCCCGGCTTGCGCATCC-CACCCCTCTGGCCGG-TTGAGCGCCC-G-
* * * * * *
16084100 TACGCTCGTTTCCGTGAGTTGACTTAAGCATACGGAGTTCCATTTCCAGTCT-AGCATATGGAGT
368 CACGCTCGTTT-CGTGGGTTGACTTAGGCATACGGAATT-CATTCCCAGTCTAAGCATACGGAGT
* * * * *
16084164 TCATTCTCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGTTGGGCTCGGGCATGT
431 TCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * * *
16084229 GTTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGAC
496 GCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGAC
16084294 GGCATTG
561 GGCATTG
16084301 TATGAATTTA
Statistics
Matches: 4453, Mismatches: 503, Indels: 186
0.87 0.10 0.04
Matches are distributed among these distances:
880 6 0.00
881 12 0.00
882 22 0.00
883 35 0.01
884 13 0.00
885 273 0.06
886 29 0.01
887 54 0.01
888 178 0.04
889 461 0.10
890 12 0.00
892 52 0.01
893 352 0.08
894 395 0.09
895 375 0.08
896 124 0.03
897 952 0.21
898 163 0.04
900 6 0.00
901 10 0.00
904 40 0.01
905 752 0.17
906 92 0.02
907 22 0.00
908 8 0.00
909 15 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
TAAAAAGTTTCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
TAGTGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
GATCGGACCGGACCGAGGGTTGCAGCAGCAAGATCGGCAGCATGCAGAGGGGGACCCGACCGATC
CCCGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
TAGGCATACGGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCA
GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCG
GGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGAG
GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCG
Found at i:16081479 original size:26 final size:26
Alignment explanation
Indices: 16081440--16081492 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16081430 GTTGACTTAG
* *
16081440 GCATACGGAATTCATTGCCAGTCTAA
1 GCATACGGAATTCATTCCCAATCTAA
*
16081466 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAATTCATTCCCAATCTAA
16081492 G
1 G
16081493 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAATCTAA
Found at i:16082370 original size:26 final size:26
Alignment explanation
Indices: 16082333--16082385 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16082323 GTTGACTTAG
* *
16082333 GCATACGAAGTTCTTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
16082359 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
16082385 G
1 G
16082386 ACCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:16083268 original size:26 final size:26
Alignment explanation
Indices: 16083238--16083290 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16083228 GTTGACCTAG
*
16083238 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16083264 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16083290 G
1 G
16083291 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16084174 original size:25 final size:26
Alignment explanation
Indices: 16084126--16084177 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16084116 AGTTGACTTA
16084126 AGCATACGGAGTTCCATTTCCAGTCT
1 AGCATACGGAGTTCCATTTCCAGTCT
*
16084152 AGCATATGGAGTT-CA-TTCTCAGTCT
1 AGCATACGGAGTTCCATTTC-CAGTCT
16084177 A
1 A
16084178 AGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 3 0.12
25 9 0.38
26 12 0.50
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (26 bp):
AGCATACGGAGTTCCATTTCCAGTCT
Found at i:16086407 original size:26 final size:26
Alignment explanation
Indices: 16086378--16086433 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
16086368 TGAGTTGACT
16086378 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
16086404 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
16086430 TAAG
1 TAAG
16086434 ATCGGACCGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:16087043 original size:301 final size:301
Alignment explanation
Indices: 16086501--16087073 Score: 920
Period size: 301 Copynumber: 1.9 Consensus size: 301
16086491 GTATTTTTTT
* * * ** *
16086501 TCGTCGGGGCATCGCCGGAGAACCTGATCGATGGCATTGTGGTTTCGGTGATCGGGGGGGCCGGG
1 TCGTCGGAGCATCGCCGGAGAACCTGATCGACGGCATTGTGGTTCCGACGATCGGGGGGGCAGGG
*
16086566 AGGGGTGAGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
66 AGGGGTGAGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCC
* **
16086631 TCATCAATCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
131 TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
16086696 TAGCCATTAAAACGTCTAAAATGGGGACACTTTTTTCACATGGTCACAAAATCTTGTACACTTCT
196 TAGCCATTAAAACGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
16086761 AGTTTTTAGCTGGTGCCACATCTTTCTTCACCGGGGCACCA
261 AGTTTTTAGCTGGTGCCACATCTTTCTTCACCGGGGCACCA
* *
16086802 TCGTCGGAGCATCGTCGGAGAACCTGA-CTGGCGGCATTG-GAGTTCCGACGATCGGGGGGGTCA
1 TCGTCGGAGCATCGCCGGAGAACCTGATC-GACGGCATTGTG-GTTCCGACGATCGGGGGGG-CA
* *
16086865 GGG-GGGGTTTA-CGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTA
63 GGGAGGGG-TGAGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTA
16086928 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
127 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
**
16086993 CCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
192 CCAGTAGCCATTAAAACGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
16087058 TTCGAGTTTTTAGCTG
257 TTCGAGTTTTTAGCTG
16087074 AATTTTTTTG
Statistics
Matches: 250, Mismatches: 18, Indels: 8
0.91 0.07 0.03
Matches are distributed among these distances:
300 2 0.01
301 242 0.97
302 6 0.02
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (301 bp):
TCGTCGGAGCATCGCCGGAGAACCTGATCGACGGCATTGTGGTTCCGACGATCGGGGGGGCAGGG
AGGGGTGAGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAACGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGGTGCCACATCTTTCTTCACCGGGGCACCA
Found at i:16087611 original size:26 final size:26
Alignment explanation
Indices: 16087560--16087612 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16087550 GTTGACTTAG
*
16087560 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
*
16087586 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
16087612 G
1 G
16087613 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAACCTAA
Found at i:16091184 original size:26 final size:26
Alignment explanation
Indices: 16091154--16091206 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16091144 GTTGACTTAG
16091154 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16091180 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16091206 G
1 G
16091207 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16092423 original size:899 final size:890
Alignment explanation
Indices: 16089528--16093887 Score: 3694
Period size: 910 Copynumber: 4.8 Consensus size: 890
16089518 ACAGTGGAGT
16089528 TGTG-GAT-GGTGCTAGGTACTTGGCCCCTTATATTGGCCCCCTAATCCCCGTCATCCAAACCTC
1 TGTGCGATGGGTGCT-GGTACTTGG-CCCTTATATTGGCCCCCT-AT-CCC-TCAT-CAAACCTC
*
16089591 GAGAACTCACA-CCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAG
60 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
16089654 TGTCTTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTTAGC
125 TGTC-TGAAA-TGGGACACTTTTTT-AAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAG-
* **
16089719 CTGAATTTTTTTCATGCATGCCAAAAAAAATACAAGGGATCATTGTCTAACCCTGTTTGGGGCCA
185 CTGAATTTTTTT-GTGCATGCCAAAAAAAATACAA-GGATCA-TGTCT-ACCAAGTTTGGGGCCA
* * * *
16089784 GAACTCCTTCCGCAAAAAATTTTAAAAAATCCCGAGACCGGTAAAAGGTTTCAAAAATCATG-AA
246 AAACTCCTTCCGAAAAAAATTTTAAAAAAT-CCGAAACC-GTAAAAAGTTTCAAAAATCATGAAA
* *
16089848 AATAG-AAACGATTCATCTTGCCATGAAACTTCAC-TGAAGGCTTAAGGGGGACCATTGTATGAA
309 AATAGAAAACGAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA---GGACCATTGTATGAA
* * * *
16089911 TTTACAAGGCATTAAAATGGCATTGGAATGCAGAGAATATGAAGACGTGCCTAAACCCACCTACC
371 TTTACAAGCCATAAAAATGGCATTGGCATGCAGA-AATATGAAGATGTGCCTAAACCCACCTACC
* *
16089976 AACCCTATCGATCCACGGCTTGCG-ATCCCGTCTCTTTGGCCGGCGTAGT----GCCCGCCC-AT
435 -ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CGGCGTAGTCGCCGCCCGCCCGCT
* * * * * * * *
16090035 -CCACTCGTTTCATCGATTGGCTTAGGTATACGGAGTTCATTCCCTGCCTAAGATTAGACCAGAC
498 GCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* * * ** ** * * * * *
16090099 CGAGGGTTATGACAGCAAGATCGACAGCACATAGAGGGGGACCCGGCTGGTCCTCGGCTTGCACA
563 TGAGGGTTGTGACAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCA
* * *
16090164 TCCCGCCCCTCTGGCC-GCTGAGCG-CCCGCACGCTCG-TTCATGCGTTTGACTTAGGCATACAG
628 TCCC-ACCCTCTGGCCGGCTGAGCGCCCCGCACGCTCGTTTCATGGGGTTGACTTAGGCATACA-
* * *
16090226 AGTTCATTCCTAGTCTACAGGTACGGAGTTGCATTCCCAAGTCCTTAGGATCAGA--TGGA-CGA
691 AGTTCATTCCTAGTCTA-AGCTACGGAGTT-CATTCCCAA-T-C-TAAGATCAGACCAGGACCG-
* * * * * *
16090288 AGGTGTGTGTCAGGGCAACATGCTGGGCTCGGGCATGTGCTGGTG-TCGTATTTTTCTTTCGTCG
750 AGG-GT-TGGCAGCGC-ACATGCTGGGCTCAGGCATGTGCTGGTGCCCGCA--TTT-TTTCGACG
* * * * * * * **
16090352 GGGCACAGATCGGGCGGGAGCATCGCCCGGAGAAACCTGACC-GACCGGCATTTGGGTT-CGCCG
809 GGG-AC--A-C---C---ATC-TTGACCAGAGACACCTGACCAGA-CGGCAATAGGGTTCCGTTG
* *
16090415 ATTCGGGGGGGCCGGAGGGCGTGTGCGCACTATGGA
862 A-TC--GGGGGCCGG-GGG-TTGCGCGCAC-AT-GA
** * * *
16090451 TGTGCGATGATTGCTGGTACTTGGCCCGTGTATATTGGCCTCCTAATCCCGCATCAAACCTCTAG
1 TGTGCGATGGGTGCTGGTACTTGGCCC-T-TATATTGGCCCCCT-ATCCCTCATCAAACCTCGA-
* *
16090516 GAACTTCGACACCCCCTTGTAGAAGAGCATCTTGAGAGTTTAGCAGGTTTG-TGCCAGTAGCCAG
62 GAAC-TC-ACACCCCC-T-TA-AAGAGCAT-TTGAGATTTTA-CAGGTTTGCTGCCAGTAGCCAT
* * **
16090580 TAAAGTGTCTGAAATGGGACAACTGTTTTCAAATGGGTCACAGAAATCTTGTACACTT-TAAATT
120 TAAAGTGTCTGAAATGGGAC-ACT-TTTTTAAAT-GGTCACA-AAATCTTGTACACTTCGAGTTT
* ** * *
16090644 TTAGCCTGAA-TATTTT-CACATGCCAACAAAAATAAAGAAGGGAATCATGTCTACCAAGTTTGG
181 TTAG-CTGAATTTTTTTGTGCATGCCAA-AAAAA-ATACAA-GG-ATCATGTCTACCAAGTTTGG
* * * * **
16090707 GGCCAAATTCTCTTTTCCGAAAAAATATTTTAAAAAATCTCG-AACCGCAAAAATTTTTGAAAAT
241 GGCCAAA-ACTC-CTTCCGAAAAAA-ATTTTAAAAAATC-CGAAACCGTAAAAAGTTTCAAAAAT
*
16090771 -AGTGAAAAATAGAAAAC-AATTCGTCCTGCCA-GAAACTTCACGTGAAGGCTTAAGGGACCATT
302 CA-TGAAAAATAGAAAACGAA-TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATT
** * * *
16090833 GTATGAATTTACAAGTGATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAATCCA
364 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * ** *
16090898 CCCACCACCCGATCGATCCACGGCTTGTGCATCCCATCTCTCTGGCTGATGTAGT-GCC-CGCCT
429 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC-GGCGTAGTCGCCGC-CCG
* *
16090961 ACCGCTCGCCCGCTCATTTCGTCGGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
492 CCCGCT-G-CCGCTCGTTTCGTCGG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * ** * *
16091026 AGACTGGACTGAGGGTTATGGTAGTAGGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCCCCG
554 AGACCGGACTGAGGGTTGTGACAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCG
* * ** *
16091091 -CTTGCGCATCTCGC-CCCTCTGGCCAGCTGAGC-ACTGGCATGCTCGTTTCAT-GGGTTGACTT
619 ACTTGCGCATC-C-CACCCTCTGGCCGGCTGAGCGCCCCGCACGCTCGTTTCATGGGGTTGACTT
* * * *
16091152 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA-
682 AGGCATAC-AAGTTCATTCCTAGTCTAAGC-TACGGAGTTCATTCCCAATCTAAGATCAGACCAG
16091216 GACCGAGGGTT-GC-GCGCACATGCT-GGCGTCAGGCATGTGCTGGT--CCGCATTTTTCTTCG-
745 GACCGAGGGTTGGCAGCGCACATGCTGGGC-TCAGGCATGTGCTGGTGCCCGCA-TTTT-TTCGA
* *
16091275 CGGGGGTCACCATCGTCGGAGCATCGCCAGAGA-ACCTGACCAG-CGG-AATTAGGGTT-CG--G
807 C-GGGGACACCATC-T---TG-A---CCAGAGACACCTGACCAGACGGCAA-TAGGGTTCCGTTG
* * *
16091334 CATC-GGGG--GGGAG-TGTGTGCACATGA
862 -ATCGGGGGCCGGGGGTTGCGCGCACATGA
* * **
16091360 TGTGCAATGGGTTCTGGGTACTTGGCCCTTATA-TGGCCGTTCTATCCCTCATCAAACCT-GAGA
1 TGTGCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCC-CCCTATCCCTCATCAAACCTCGAGA
* *
16091423 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGTCAGTAGCCATTAAAGTGG
64 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGT
* * *
16091488 CTTAAATGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGGTTTTAGCTGAAT
128 CTGAAATGGG-ACACTTTTTT-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* ** * * *
16091553 TTTTTTTTGCATGATAATAAAAATACAAGGATCATGTCTACCAAGTTTTGGGCCAAAACTCCTTA
191 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * * *
16091618 C-AAAAAAATTTTAAAAAATCCGAAACCATAAAATGTTTCAAAAAATCGTGAAAAATAAAAAATG
256 CGAAAAAAATTTTAAAAAATCCGAAACCGTAAAAAGTTTC-AAAAATCATGAAAAATAGAAAACG
*
16091682 AATCGTTCCTGCCATGAAACTTCACGTGAAGGCTTAA-GACCATTGTATGAATTTACAAGCCATA
320 AATCG-TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGACCATTGTATGAATTTACAAGCCATA
* * *
16091746 AATAATGGAATTTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCCTATCGAT
384 AA-AATGGCA-TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC-ACCCTATCGAT
* *
16091811 CCACGGCTTTACGCATCCCGTCTCTCTGGCCGGGGGGTGAGTGGGCGCCGCGCCGCCCGTGCTGC
446 CCACGGC-TTGCGCATCCCGTCTCTCTGG-C--GGCGT-AGT---CGCCGC-CCGCCC--GCTGC
** * *
16091876 TCGCTCGTTTAATCGGTTGGCTTAGGCATACAGGAGTTCATTCCCAATCTAAGATCAGATCGGAC
500 -CGCTCGTTTCGTCGGTTGGCTTAGGCATAC-GGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* * * * *
16091941 TGA-GGTTGTGACAGTAGGATCGATAGCCATGCAGACGGTGACCCGGCCGATCCGCCGACTTGCG
563 TGAGGGTTGTGACAGCAGGATCGGTAG-CACGCAGAGGGGGACCCGGCCGATCC-CCGACTTGCG
* * *
16092005 GATCCCACCCTCTAGCCGGCTGAGCGCCCCGCACGCTCGTTTTATGGGGTTGACTTAGGCCATAC
626 CATCCCACCCTCTGGCCGGCTGAGCGCCCCGCACGCTCGTTTCATGGGGTTGACTTAGG-CATAC
* *
16092070 GAAGTTCATTCCTAGTCTAAGCTACGGAGTTTCATTCCCAATTTAGGATCAGACCAGGACCGAGG
690 -AAGTTCATTCCTAGTCTAAGCTACGGAG-TTCATTCCCAATCTAAGATCAGACCAGGACCGAGG
16092135 GTTGGCAGC-CACATGCTGGGCTC-GGCATGTGCT-GTGCCCG-A-TTTTTCGAC-GGG-CACCA
753 GTTGGCAGCGCACATGCTGGGCTCAGGCATGTGCTGGTGCCCGCATTTTTTCGACGGGGACACCA
* * * * *
16092193 T-TTG-CC-GA-ACACCTTA-CTG-TGGTAAT-GGGTTCCGATTGATCGGGCGCCGGGGGTTGCG
818 TCTTGACCAGAGACACCTGACCAGACGGCAATAGGGTTCCG-TTGATCGGGGGCCGGGGGTTGCG
16092251 CGCACATGA
882 CGCACATGA
** * * * *
16092260 TGTGCGATGGGCACCGGTACTTAGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAAC
1 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
16092325 TCACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCTAGTAGCCATTAAAGTGTCTG
66 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* **
16092390 AAATGGGAACACCTTTTTTAAATTGTCACAAAATCTTGTACGTTTCGAGTTTTTAGCTGAATTTT
131 AAATGGG-ACA-CTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * *
16092455 TTTGTGCATGCCAACACAAATAAAAGTATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-
194 TTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * * *
16092519 AAAAAATTTTTAAAAATCTC-AAACCGCAAAAAGTTTTAAAAATCCTGAAAAATAGAAAACGAGT
259 AAAAAATTTTAAAAAATC-CGAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAAT
* * * *
16092583 CGTCTTGCCATTAAACTTCACATGAAGGCTTAAGGGAGCAATGTATGAATTTACAAGCCATAAAA
323 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAA
*
16092648 ATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
387 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* *
16092713 CTTGCGCATCCCGTCTCTCTGGTCGGCATAGTGCCCACCCGCCCATCCGCCCGTCCATCCGCCCG
452 CTTGCGCATCCCGTCTCTCTGG-CGGCGTAGT---C-GCCG--C--CCGCCCG--C-T--G-CCG
* **
16092778 CTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAG
502 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAG
* * * * * * * * * *
16092843 CGTTGCGACAGCAGGATTGGCAGCACGCAAAGGGGGACCCGACAGATCCCCGGCCTGCGCATGCC
567 GGTTGTGACAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCC
* ** * * * * *
16092908 ACCCCTTCTGGTCGATTGAG-GCGCCACACGCTCATTTCGTTGGGTTGACTT-----T--AAG--
632 A-CCC-TCTGGCCGGCTGAGCGCCCCGCACGCTCGTTTCATGGGGTTGACTTAGGCATACAAGTT
* * *
16092963 -----C-A-T-T-A---A-GGAGTTCATTTCCCAATCTAAGATCGGACC-CGACCGAGGG-TGCC
695 CATTCCTAGTCTAAGCTACGGAGTTCA-TTCCCAATCTAAGATCAGACCAGGACCGAGGGTTGGC
* *
16093013 AGCAGCACATGCTGGGCTC-GGCATGTGCTGGTTG-CCACA-TTTTTCTTATCGGGG--ACCATC
759 AGC-GCACATGCTGGGCTCAGGCATGTGCTGG-TGCCCGCATTTTTTC-GA-CGGGGACACCATC
* * * * * * *
16093073 GTGGAGCGATCACCGGAGA-ACCTGAATCGGATGGCATTGGGGTTCCGGTGATACGGGGGGGCCG
820 -TTGA-C---CA---GAGACACCTG-ACCAGACGGCAATAGGGTTCCGTTGAT-C--GGGGGCC-
* *
16093137 AGGGGGTCGAGGGCCGAGGGGGTGCGACATGA
872 -GGGGGT----TG-C------GCGC-ACATGA
* *
16093169 TGTGCGATAGGTTGCTGGTATTTGG-CCTTATATTTGGCCCCCCTATCCCT-ATCAAACCTCGAG
1 TGTGCGAT-GGGTGCTGGTACTTGGCCCTTATA-TTGG-CCCCCTATCCCTCATCAAACCTCGAG
*
16093232 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGT
63 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * *
16093297 CTAAAATAGGGACACTTCTTTCAAATGTTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAT
128 CTGAAAT-GGGACACTT-TTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* ** * *
16093362 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGACCCAAAACTCTTTT
191 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* *
16093427 CG-AAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
256 CGAAAAAAATTTTAAAAAATCCGAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* * * *
16093491 GTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTTTATGAATTTAGAAGCCATAA
321 ATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAA
* *
16093556 AATTGCCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-
385 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * *
16093620 GAGCTTGCGCATCCCGTCTCTCTGGCTAGCGTAGTACTCGTCGACCCGCCCGC--CCGCTCATTT
450 G-GCTTGCGCATCCCGTCTCTCTGGC-GGCGTAG---TCGCCG-CCCGCCCGCTGCCGCTCGTTT
* * * * * *
16093683 TGTCAGTTGGCTTAGGCATAC-AACGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGC
509 CGTCGGTTGGCTTAGGCATACGGA-GTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGT
* * * *
16093747 GGCAGCAGGATCGGTAGCACGCAAAGGGGGACCAGACCGAATCCCCGACTTGCGCATCCCACCCC
573 GACAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGCCG-ATCCCCGACTTGCGCATCCCA-CCC
* *
16093812 TCTGGCCGGCTAAGCACCCGCCGCACGCTCGTTT--TGAGGGTTGACTTAGGCATACAGAGTTCA
636 TCTGGCCGGCTGAGC-GCC-CCGCACGCTCGTTTCATG-GGGTTGACTTAGGCATACA-AGTTCA
*
16093875 ATCCTAGTCTAAG
697 TTCCTAGTCTAAG
16093888 ATCGGACCAG
Statistics
Matches: 2851, Mismatches: 367, Indels: 441
0.78 0.10 0.12
Matches are distributed among these distances:
872 6 0.00
873 13 0.00
874 46 0.02
875 4 0.00
876 9 0.00
877 1 0.00
878 7 0.00
879 4 0.00
880 3 0.00
881 1 0.00
882 2 0.00
885 1 0.00
889 9 0.00
890 2 0.00
891 4 0.00
892 39 0.01
893 74 0.03
894 28 0.01
895 102 0.04
896 73 0.03
897 112 0.04
898 251 0.09
899 335 0.12
900 143 0.05
901 18 0.01
902 2 0.00
903 8 0.00
904 7 0.00
905 46 0.02
906 83 0.03
907 47 0.02
908 40 0.01
909 67 0.02
910 462 0.16
911 45 0.02
912 15 0.01
913 8 0.00
914 2 0.00
915 1 0.00
916 8 0.00
917 1 0.00
918 1 0.00
919 6 0.00
920 2 0.00
921 11 0.00
922 18 0.01
923 22 0.01
924 18 0.01
925 26 0.01
926 15 0.01
927 37 0.01
928 91 0.03
929 96 0.03
930 74 0.03
931 81 0.03
932 25 0.01
933 6 0.00
934 3 0.00
935 41 0.01
936 143 0.05
937 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (890 bp):
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGACACTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
TGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
AAAATTTTAAAAAATCCGAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAATCGT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGTCTCTCTGGCGGCGTAGTCGCCGCCCGCCCGCTGCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGACAGCAGGATCG
GTAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCACCCTCTGGCCGGCTGAGC
GCCCCGCACGCTCGTTTCATGGGGTTGACTTAGGCATACAAGTTCATTCCTAGTCTAAGCTACGG
AGTTCATTCCCAATCTAAGATCAGACCAGGACCGAGGGTTGGCAGCGCACATGCTGGGCTCAGGC
ATGTGCTGGTGCCCGCATTTTTTCGACGGGGACACCATCTTGACCAGAGACACCTGACCAGACGG
CAATAGGGTTCCGTTGATCGGGGGCCGGGGGTTGCGCGCACATGA
Found at i:16094822 original size:26 final size:26
Alignment explanation
Indices: 16094793--16094845 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16094783 CCAGTCCGAT
*
16094793 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16094819 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16094845 C
1 C
16094846 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16095720 original size:25 final size:25
Alignment explanation
Indices: 16095692--16095742 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
16095682 CCGGTTCGAT
* *
16095692 CTTAGACTGGGAATAACTCCGTATG
1 CTTAGACTGGAAAGAACTCCGTATG
*
16095717 CTTAGACTGGAAAGAACTCTGTATG
1 CTTAGACTGGAAAGAACTCCGTATG
16095742 C
1 C
16095743 CTAAGTGAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAAAGAACTCCGTATG
Found at i:16096010 original size:897 final size:893
Alignment explanation
Indices: 16094015--16096305 Score: 3196
Period size: 895 Copynumber: 2.6 Consensus size: 893
16094005 ATGCGTAAGT
* * * * *
16094015 CGGGGATCGATCGAGTCCCCCTCTACGTGCTACCGATCCTACTACTGCAACCCT-TGATCTGGTT
1 CGGGGATCGACCGGGTCCCCCTCTACGTGCTACCGATCCTACTGCTGCAACCCTCAG-TCTGGTC
*
16094079 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGTGGGCGGGCGGG
65 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGG
** * ** *
16094144 CAGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAATTATGGATCGATAGGGTGGTAGGT
130 CAGGCGGGCACTACACCGGCCAGAGAGATGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGT
* * *
16094209 GGGTTTAGGCACATCTTCATATTTCTGC-ATGCCAATGCCAGTTTTATGGCTTGTAAATTCATAT
195 GGGTTTAGGCACATCTTCATATTTCTACGA-GCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
16094273 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCATTTTCTATTTTTTCATGA
259 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTATTTTCTA-TTTTTCACGA
*
16094338 TTTTCAAAGCTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAG
323 TTTTCAAA-CTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAA
16094402 CTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
386 CTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
16094467 TGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGC
451 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGC
*
16094532 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATAAGGGAT
516 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTAGAGGTTTGATAAGGGAT
* *
16094597 AGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGAC
581 AGGGGGCCAAAATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGCACACCCCCCAGAC
* *
16094662 CCCCCCGATCGTCGGAACCCCAATACCGCCGGTCAAGTTCTCCGACGATGGTGCCCCCGACGAAG
646 CCCCCCGATCGCCGAAACCCCAATACCGCCGGTCAAGTTCTCCGACGATGGTGCCCCCGACGAAG
*
16094727 AAAAATACGGCACCAGCACATGCCCGAACCCAGCATGTGCTACTGCAACCCCCGGCCCAGTCCGA
711 AAAAATACGGCACCAGCACATGCCCGAACCCAGCATGTGCTACCGCAACCCCCGGCCCAGTCCGA
* *
16094792 TCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
776 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCAACC
* *
16094857 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGA
841 CACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAACA
* * * * * * * * * *
16094910 CGAGGATTGGCCGGCTCCCCCTCTGCGTGCTGCCAATCCTACTGCTGCAACTCTCAGTTTGGTCC
1 CGGGGATCGACCGGGTCCCCCTCTACGTGCTACCGATCCTACTGCTGCAACCCTCAGTCTGGTCT
* * * * *
16094975 GACCTTAGA-TCGAGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGTGCGGGCGGG
66 GATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGG
*
16095039 CAGGCGGGCACTACACCGGCCAGAGAGATTGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGT
130 CAGGCGGGCACTACACCGGCCAGAGAGATGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGT
* *
16095104 GGGTTTAGGCACATCTTCATATTTCTACGAGCCAGTGCCATTTTTATGGCTTGTAAATTCATCCA
195 GGGTTTAGGCACATCTTCATATTTCTACGAGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
16095169 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTATTTTCTATTTTTCACGACT
260 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTATTTTCTATTTTTCACGA-T
* * * * * *
16095234 TTTGAAACCTTTTGCGATTCGAGATTTTTTAAAATTTTTTTGGAAGTAGTTTTGGCCCCAAACTT
324 TTTCAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACTT
* *
16095299 GGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
389 GGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
16095364 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGGACACTTTAATGGCTGACTGGCC
454 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-GGACACTTTAATGGCT-ACTGG-C
* *
16095429 AGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGATGTGAGTTCTCGAGGTTTGATGAGGG-T
516 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTAGAGGTTTGATAAGGGAT
* *
16095492 A-GGGGCCAATATAAGGGCCAAGTACCAGCACCAAT-GCAGATCATGTGCGCACA-CCCCCAG-C
581 AGGGGGCCAAAATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGCACACCCCCCAGAC
* * *
16095553 CCCCCCGAATCGCCGAAACCCCAATGCCGCCTGGTCAGGTT-TTCGACGATGCTCCGTGTGTTGG
646 CCCCCCG-ATCGCCGAAACCCCAATACCGCC-GGTCAAGTTCTCCGACGA-------TG-G-T-G
** * * *
16095617 TGCCCGACGAAGAAAAAT-CGGCACCAGCACATG-CCGAGCCCAGCATGT-CTACCGTAACCCTC
699 CCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAACCCAGCATGTGCTACCGCAACCCCC
* * * *
16095679 GGTCCGGTTCGATCTTAGACTGGGAAT-AACTCCGTATGCTTAGACT-GGAAAGAACTCTGTATG
764 GGCCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAAGAACTCCGTATG
* * * * *
16095742 CCTAAGTGAACCCACGAAACGAGCGTGGGGGCACTCGGCCGGCCAGAGGGGTGGGATGCGCAACC
829 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAACA
* * *** *
16095807 CGGGGATCGACCGGGTCCCCCTCTACGTGCTATCGATCCTGCTGCCATAACCCTCAGTCCGGTCT
1 CGGGGATCGACCGGGTCCCCCTCTACGTGCTACCGATCCTACTGCTGCAACCCTCAGTCTGGTCT
* * * ** * *
16095872 AATCTTAGACTGGGAATGAACTCTGTATGCGTAAGCCAATTGACGAAATGAGCGGGCGAGCGGGT
66 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGC
* * * * *
16095937 AGGCGGGCACTACATCAGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATCGGGTGGTGGGTG
131 AGGCGGGCACTACACCGGCCAGAGAGATGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTG
* * * * * *
16096002 GATTTAGGCACATCTTTATATTTCTATGTGCCAATGCCATTTTGATAGCTTGTAAATTCATACAA
196 GGTTTAGGCACATCTTCATATTTCTACGAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * * *
16096067 TGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAGGACGAATTGTTTTCTATTTTTCACTATTT
261 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTATTTTCTATTTTTCACGATTT
* * * * *
16096132 TCAAAATTTTTACGGTTCGGGATTTTTTAAAA-TTTTTCGAAAGGAGATTTGGCCCCAAACTTGG
326 TCAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACTTGG
* * * * *
16096196 TAGACATGATCCTTTTATTTTTGTTGGCATGTGA-AAAAATATTCAGCTAAAAATTTGAAGTGTA
391 TAGACATGATCCTTGTATTTTTGTTGGCATG-CACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
16096260 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
455 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACT
16096306 NNNNNNNNNN
Statistics
Matches: 1232, Mismatches: 142, Indels: 45
0.87 0.10 0.03
Matches are distributed among these distances:
891 8 0.01
892 33 0.03
893 25 0.02
894 200 0.16
895 419 0.34
896 64 0.05
897 379 0.31
898 20 0.02
899 36 0.03
900 15 0.01
901 16 0.01
902 17 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
CGGGGATCGACCGGGTCCCCCTCTACGTGCTACCGATCCTACTGCTGCAACCCTCAGTCTGGTCT
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGC
AGGCGGGCACTACACCGGCCAGAGAGATGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTACGAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTATTTTCTATTTTTCACGATTT
TCAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACTTGG
TAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTAGAGGTTTGATAAGGGATAGGGG
GCCAAAATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGCACACCCCCCAGACCCCCC
CGATCGCCGAAACCCCAATACCGCCGGTCAAGTTCTCCGACGATGGTGCCCCCGACGAAGAAAAA
TACGGCACCAGCACATGCCCGAACCCAGCATGTGCTACCGCAACCCCCGGCCCAGTCCGATCTTA
GACTGGGAATGAACTCCGTATGCTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCAACCCACGA
AACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAACA
Found at i:16099368 original size:897 final size:895
Alignment explanation
Indices: 16097310--16099371 Score: 2958
Period size: 897 Copynumber: 2.3 Consensus size: 895
16097300 NNNNNNGGTT
* * * *
16097310 TGATCTTAGACCGGGAATGAACTCCGTAT-CCTAAGCCAACTGATGAAACGA---A-CGGGCGGG
1 TGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGG
* * * *
16097370 CGGGCGGGCACTACACCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
66 CAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
16097435 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTGTGGCTTGTAAATTCATACA
131 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
16097499 ATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
196 ATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * *
16097564 TTTGAAACTTTTTGTGGTTCGGGATTTTTTTAAATTTTTTTGAAAGGAATTTTAGCGCCAAACTT
261 TTTGAAACTTTTTGTGGTTCAGGATTTTTTAAAATTTATTCGAAAGGAATTTTAGCGCCAAACTT
** * *
16097629 GGTAGATGTGATGCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCAACGTGT
326 GGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAAATCAACGTGT
* *
16097694 ACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
391 ACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTCCAAACACTTTAATGGCTACTGGCAGC
16097759 AAACCTGTAAAATCTCAAATAGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGGATAG
456 AAACCTGTAAAATCTCAAATAGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGGATAG
* *
16097824 GGGGCCATTAAAGGGCCAAGATACCAGGCCACCATCGCACATCATGTGCGCACACCCTGGCCCCC
521 GGGGCCAATAAAGGGCCAAGATACCAGGCCACCATCGCACATCATGTGCGCACACCCCGGCCCCC
* * * ** * * * *
16097889 CGATTGTCAGAACCCAATGTTTGCCCGGTCAGGTTCTCCGACGATGGTCGCATGCCGGTAAAGAA
586 CGATCGCCAGAACCCAACGTCAGCCAGGTCAGGTTCTCCGACGATGGTCGCA-CCCAGCAAAGAA
*** ** *
16097954 AAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAATCCGATC
650 AAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCAATCCAATC
* * * *
16098019 TTCGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
715 TTAGACTGGGAATGAACTCCATATGCTTAGAATGGGAATGAACTCCGTACGCCTAAGTCAACACA
* * * *
16098084 CGAAACGAGCGTGCGGGCGCTCAGCCGGGCAGAGGGGCGGGATGCACAAGCCGAGGATCGGATCG
780 CGAAACGAGCGTGCGAGCACTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGGACCG
* * *
16098149 GGTCCCCCTCTACATGCTGTCGATCCTACTACTGCAACCCTCAGTCCGGTC
845 GGTCCCCCTCTACATGCTGCCAATCCTACTACTGCAACCCTCAATCCGGTC
* * *
16098200 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGG
1 TGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGG
* * * *
16098265 CAGGCAGGCACTACGCTGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGTT
66 CAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
16098330 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
131 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
16098395 ATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
196 ATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * *
16098460 TTTCAAAACTTTTTGTGGTTCATGATTTTTTAAAATTTATTCGAAAGGATTTTTGGTC-CCAAAC
261 TTT-GAAACTTTTTGTGGTTCAGGATTTTTTAAAATTTATTCGAAAGGAATTTTAG-CGCCAAAC
* *
16098524 TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTTGAA-G
324 TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAA-ATCAACG
* *
16098588 TGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTCCAAACACTTTAATGGCTACTGGC
388 TGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTCCAAACACTTTAATGGCTACTGGC
16098653 AGCAAACCTGTAAAATCTCAAAT-GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGG
453 AGCAAACCTGTAAAATCTCAAATAGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGG
16098716 ATAGGGGGCCAATATAAGGGCCAAG-TACCA-G-CACCCATCGCACATCATGTGCGCACACCCCC
517 ATAGGGGGCCAATA-AAGGGCCAAGATACCAGGCCA-CCATCGCACATCATGTGCGCACA--CCC
* * * *
16098778 CGGCCCCCCGATCGCCGGAACCCAAGCCGTCAGTCAGGTTCTTCGGTGATGCTTCGACGATGGT-
578 CGGCCCCCCGATCGCCAGAACCCAA--CGTCAGCCAGG-TC--AGGT--T-CTCCGACGATGGTC
* *
16098842 GC-CCCAGCGAAGAAAAATACAGCATCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCT
635 GCACCCAGCAAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCT
*** * *
16098906 CGGTCTGGTCCAATCTTAGATTGGGAATGAACTCCGTATGCTTAGAATGGGAATGAACT-CGTAC
700 CGGTCCAATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGAATGGGAATGAACTCCGTAC
* * * **
16098970 GCCTAAGTCAACACACGAAACGAGCGTGCGAGCACTCAGTCGGCCAGAGGGGTGGGATGCGCATT
765 GCCTAAGTCAACACACGAAACGAGCGTGCGAGCACTCAGCCGGCCAGAGGGGCGGGATGCACAAG
*** * * * *
16099035 CCG-GGTATCGG-CCGGGTCCCCCTCTGTGTGCTGCCAATTCTATTGCTGCAACCCTCAATCTGG
830 CCGAGG-ATCGGACCGGGTCCCCCTCTACATGCTGCCAATCCTACTACTGCAACCCTCAATCCGG
16099098 TC
894 TC
* * * * *
16099100 TGATCTTAAACTGGGAATGAACTCTGTATGTCTATGTCAACCGAGGAAACGAGCGAGCGGGCGGG
1 TGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGG
* *
16099165 CAGGCGGGCATTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
66 CAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
16099230 GGGTTTAGGCACATCTCCAT-TTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA-ACA
131 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
16099293 ATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAAACGACTCGTTTACTATTTTTCACGATT
196 ATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
16099358 TTTGAAACTTTTTG
261 TTTGAAACTTTTTG
16099372 CGTTTCGGAC
Statistics
Matches: 1049, Mismatches: 100, Indels: 39
0.88 0.08 0.03
Matches are distributed among these distances:
890 28 0.03
891 21 0.02
894 2 0.00
895 129 0.12
896 121 0.12
897 259 0.25
898 73 0.07
899 45 0.04
900 182 0.17
901 68 0.06
902 106 0.10
904 3 0.00
905 12 0.01
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (895 bp):
TGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGG
CAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
TTTGAAACTTTTTGTGGTTCAGGATTTTTTAAAATTTATTCGAAAGGAATTTTAGCGCCAAACTT
GGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAAATCAACGTGT
ACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTCCAAACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATAGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGGATAG
GGGGCCAATAAAGGGCCAAGATACCAGGCCACCATCGCACATCATGTGCGCACACCCCGGCCCCC
CGATCGCCAGAACCCAACGTCAGCCAGGTCAGGTTCTCCGACGATGGTCGCACCCAGCAAAGAAA
AATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCAATCCAATCT
TAGACTGGGAATGAACTCCATATGCTTAGAATGGGAATGAACTCCGTACGCCTAAGTCAACACAC
GAAACGAGCGTGCGAGCACTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGGACCGG
GTCCCCCTCTACATGCTGCCAATCCTACTACTGCAACCCTCAATCCGGTC
Found at i:16099766 original size:26 final size:26
Alignment explanation
Indices: 16099737--16099787 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16099727 GGTCCGATCG
*
16099737 TAGACTGGGATTGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
16099763 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
16099788 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:16100764 original size:26 final size:26
Alignment explanation
Indices: 16100735--16100787 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16100725 GTTGACTTAG
*
16100735 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
16100761 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
16100787 G
1 G
16100788 ATCGGATTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:16101658 original size:26 final size:26
Alignment explanation
Indices: 16101628--16101680 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16101618 GTTGACTTAG
*
16101628 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16101654 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16101680 G
1 G
16101681 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16102139 original size:893 final size:890
Alignment explanation
Indices: 16100710--16110044 Score: 11290
Period size: 893 Copynumber: 10.6 Consensus size: 890
16100700 GTATGCCCTT
* *
16100710 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTAA
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
*** * *
16100775 TTCCCAGTCTAAGATCGGATTAGACTGAGGGTTGCGGCAGCACAAGCTGGGCTCGGGCATGTGCT
66 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * * *
16100840 GGTGCCGTATTTTTTTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGC
131 GGTGCCGCAATTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGC
** * * * * *
16100905 ATTGGGGTTCCGGTGATCGGGGGGGTCGGGCGGGGTGTGCGCAAATGATGTGTGATGGATGCTGG
196 ATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
16100970 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
260 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
16101035 GCATTTCAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTT
325 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
16101100 TCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
390 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* *
16101165 AAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAACTCCTTCCGAAAAAATTTAAAAAAATC
455 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATC
* * *
16101230 TCGAACCGAAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
519 CCGAACC-TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
*
16101295 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
583 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* *
16101360 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTT
648 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
16101425 TGGCCGACGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
713 TGGCCGACGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * *
16101490 TCTAAGATCGGACCGGACTGAGGGTTGCAGCAGTAGGATCTGCAGCATGCAGAGGGGGACCCGAC
778 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCTGCAGCACGCAGAGGGGGACCCGAT
* *
16101555 CGATCCCCGGCTTGCTCATCCCACCCCTCTGGCCGGCTGAGCGCCCGC
843 CGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGC
*
16101603 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
**
16101668 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGCAGCACATGCTGGGCTCGGGCATGTGCT
66 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * ** * **
16101733 GGTGCCTCAATTTTCTTTGTCAAGGCACCATCGTCGGAGCATCGCCGGAGAACCAGACTAGCGGC
131 GGTGCCGCAATTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGC
* * * * * *
16101798 ATTGGGGTTCTGGCGATCGCGGGGCCGAGGAGGGGGTGTACGCACATGATGTGAGATGGGTGCTA
196 ATTGGGGTTCCGACGATCGGGGGGCCG-GG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
16101863 GTACCTGGCCTTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAG
259 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
16101928 AGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTT
324 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTT
* * *
16101993 TTTCAAATCGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAC
388 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
** *
16102058 -AAAATA-AAGGATCACGTCCGCCAAGTTTGGGGCCAAAACTCCATCCAAAAGAATTTTAAAAAA
453 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA-AATTTTAAAAAA
**
16102121 TCCCGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTATTCTTGCCATGAAACT
517 TCCCGAACCT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
16102186 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCATTGGCACGTAG
581 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* *
16102251 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGACTC
646 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * *
16102316 TCTGGCCGGCGTAGTGCCCGCCCGCTCGTGTT-GTCAGTTCGCTTAGGCATACGGAGTTTATTCC
711 TCTGGCCGACGTAGTGCCCGCCCGCTCGT-TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * ** * * ** *
16102380 CAATCTAAGATCGAACCAGACCGAGGCTTGC-GCATCCCG-TCT------CTCTG-GCCGG--CT
775 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCTGCAGCACGCAGAGGGGGACCC
** * * ** * ** * *
16102434 GA--G-TGGCC-GCTAGCTCATTTCA----T-GGGTTGACTTAG-GCATACG-
840 GATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGC--CCGC
* * * *** *
16102476 AAGTTC-ATTC-CCAG-T--C-TAAGCATACGGAGTTCATTCCCAG--T---C--A--AAG----
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
* * * ** *
16102522 -----A-TC----A---GACCGCACCTAGGGTTTCGATAGCACATGCTAGGCTCGGGCATGTGCT
66 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * * * **
16102574 GGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGTAGCATCGTCGGAGAACCTGACCAACGGC
131 GGTGCCGCAATTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGC
* * * *
16102639 ATTTGGGTTCCGGCGATTGGGGGG-C-GGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGT
196 ATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
16102702 ACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAAGAG
261 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
16102766 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTT
326 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
16102831 CAAATGGTTACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAA
391 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
16102896 AATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTTCAAAAAAAGTTTAAAAAATCC
456 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAATTTTAAAAAATCC
* *
16102961 CGAACCGCT-AAAAGTTTTAAAAATCATGAAAAATAGAAAATC-AGTCGTCTTGCCATGAAACTT
520 CGAA-C-CTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA-CGAGTCGTCTTGCCATGAAACTT
* * * *
16103024 CACGTGAAGGCTTAAGGG-CCATTGTATGAATTTACAAGCCAAAAAAATGGTATTGGCATGTAGA
582 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* * * *
16103088 ATTATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCAT-CCATCTCT
647 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* *
16103152 CTGGTCGACGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGG
712 CTGGCCGACGTA----------G--TGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * ** * **
16103217 AGTTCATTCCCAATCTAAGATCAGACC-GATCCAAGGGTTGTGATAGCAGGATCAGCAGCTTGCA
765 AGTTCATTCCCAGTCTAAGATCGGACCGGA-CCGAGGGTTGCGGCAGCAGGATCTGCAGCACGCA
* * * * * *
16103281 GAGGGCGACTCGGTCGATCCCCGAG-TTGCGCATCTCACCCCTCTGGACGACTGAGCGCCCTC
829 GAGGGGGACCCGATCGATCCCCG-GCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGC
*
16103343 ACGCTCGTTTCGTGGGTTGACTTAGG-ATTAAGGAGTTCATTCCCAGTCTAAGCATACGAAGTTC
1 ACGCTCGTTTCGTGGGTTGACTTAGGCA-TACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTC
* * * *
16103407 ATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGTCATGTGG
65 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* * ** *
16103472 TGGTGCCAC-A--TT-TT--T-GGGGCACCATCATCGGAGCATCATC-GAGAACCTGACCGGTGG
130 TGGTGCCGCAATTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGG
* *
16103529 CATTGGTGTT-CTAGCGATCGGGGTGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
195 CATTGGGGTTCCGA-CGATCGGGG-GGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
16103591 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAA
258 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
16103656 GAGCATTTGAGATTTTACAGGCTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
323 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * * *
16103721 TTTCAAACGATCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAAGTTTTTTG-GTCATGCTAA
388 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG-CATGCCAA
*
16103785 CAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
452 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAA
* * * * *
16103850 ATCTCGAATCGAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
516 ATCCCGAACCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
16103915 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTCGCACGTAG
581 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * * *
16103980 AAATATGAAGATGTCCCAAAACCCTCCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTC
646 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * *
16104045 TCTGGCCGGCGTAGTGCCTGCCTGCCTGCCGCCCGCTCGTTTCATTGGTTTGCTTAGGCATACGG
711 TCTGGCCGACGTA------G--TG-C--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * * **
16104110 AGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGTGGTAGCAGGATC-GACAGCTTGCA
765 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCTG-CAGCACGCA
* * * * * *
16104174 GAGGGGGATCCGGTCGATCCCCGAG-TTACGCATCTCGCCCCTCTGGACGACTGAGCGCCCGC
829 GAGGGGGACCCGATCGATCCCCG-GCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGC
* * * *
16104236 ACGATCGTTTCGTGGGTTGACCTAGG-ATTAAGGAGTTCATTCCCAGTCTAAGCATATGAAGTTC
1 ACGCTCGTTTCGTGGGTTGACTTAGGCA-TACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTC
* * * * * *
16104300 ATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCACATACTGGGCTCAGGCATGTGC
65 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* * * * *
16104365 TGGTGCCACATTTTTCTTCATCGGGGCACCATCATCGGAGCATCACCGGAGAACCTGACCGGCGG
130 TGGTGCCGCAATTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGG
16104430 CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGTGGGTGGTGTACGCACATGATGTGCGATGGGT
195 CATTGGGGTTCCGACGATC-GGGGGGCCGGGGG-GGGT-GTG--CGCACATGATGTGCGATGGGT
* * *
16104495 GCTGCTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCACCCCCTT
255 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * **
16104560 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGTTAC
320 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
16104625 TTTTTTCAAATGGCCACAAAATATTGTACACTTGGAGTTTTTAGCTGAATGTTTTTGTGCATGCC
385 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * *
16104690 AACAAAAATACAAGGATCATGGCTACCACGATTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
450 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAAATTTTAAA
* *
16104755 AAATCTCGAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
514 AAATCCCG-AACC-TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
16104820 AACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
577 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * * *
16104885 GCAGAAATATGAAGATATACCTAAACCCACCTACCACCCTATCGATCAACGGCATGCGCATCCCG
642 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
16104950 TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACA
707 TCTCTCTGGCCGACGTAGT----GCCCGCCCG--C--TCGTTTCGTCGGTTGGCTTAGGCATACG
* * ** * *
16105015 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCTACAGCAGGA-CCGACAGCACCA
764 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCTG-CAGCA-CG
* *
16105079 CAGAGGGGGACCCGATCAATCCCCGGCTTGCGCATCCCTCCCCTCTGGCCGACTGAGCGCCCGC
827 CAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGC
* * *
16105143 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAACATATGGAGTTCA
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
* *
16105208 TTCCCAGTCTAAGATCGGACCGAACCGAGGGTTG-GGCAGCACATGCTGGGCTTGGGCATGTGCT
66 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* ** * ** *
16105272 GGTGCCGCATTTTTCTTCACCGGGGCAACATCGTCGGAGCATCGCTAGAGAACCTGACCGACGGC
131 GGTGCCGCAATTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGC
** * * *
16105337 A-TGGGGTTCCGAC-ATCGGGGGGCC-GGGGGGGTGTATGCATATGATGTGTGATGGGTGCAGGT
196 ATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
16105399 ACTTGACCCTTATATT-GCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
261 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
16105463 CTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGGCAC-TTTTT
326 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
16105527 CAAATGGTCACACAATCTTGTACAGTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
391 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * *
16105592 AATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCTTTTCCAAAAAATTTAAAAAAATCC
456 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-CTTCCAAAAAATTTTAAAAAATCC
* *
16105657 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCCTGCCATGAAACTTCA
520 CGAACC-TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
16105722 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
584 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* * *
16105787 TATGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCCTCTCTTT
649 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* *
16105852 GGCCGACGTAGTGCCCACCCGCCTGCCCACCCGCTATTTTCGTCGGTTGGCTTAGGCATACAGAG
714 GGCCGACGTAGTGCCCGCCCG-CT-------CG----TTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * *
16105917 TTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGTAGGAT-TGACAGCACGCAGA
767 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCTG-CAGCACGCAGA
* ** * * * ** ** * **
16105981 AGGGGACCCGGCCAATCCCCGGCTTGCCCGTCCTGCCTTTTTGGCCGGTTGAG-GACCCGC
831 GGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCG-CCCGC
* *
16106041 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCA
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
** * * * * *
16106106 TTCCCAGTCTAAGATCGGACTTGACCAAGGGTTGCGACAGCACATGCTGGGCTTGGGCAAGTACT
66 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * *
16106171 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CTAGAGCATCGCCGGAGAACCTGATCGACGG
131 GGTGCCGCAATTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGAGAACCTGACCGGCGG
* * * *
16106235 CATTGGGGTTCCGGCGATCGGGCGGGCC-GGTGGGGTGTGCGCACCTGATGAGCGATGGGTGCTG
195 CATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
16106299 GTACTTGGCCCTTATATTGGCCCCCGATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAG
259 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
**
16106364 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTTGGACACTTTT
324 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
16106429 TTCGAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
389 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* *
16106494 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCTGAAAAAATTTTAAAAAAT
454 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAAATTTTAAAAAAT
* * * *
16106559 CCCGAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACAT
518 CCCGAACC-TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
16106624 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCACGTAGA
582 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
*
16106689 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCT
647 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * *
16106754 CTGGCCGACGTAATGCCCGCCCGCCCGTCCGCTCATTTCGTCGGTTGGCTTAGGTATACAGAGTT
712 CTGGCCGACGTAGTGCCCGCCCG--C-T-CG----TTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * * * * * *
16106819 CA-TCCCAATCTAAAATCAGG-TCAGATCGAGGGTTGCAGCAGCATGATCTACAGCACGTAGAGT
769 CATTCCCAGTCTAAGATC-GGACCGGACCGAGGGTTGCGGCAGCAGGATCTGCAGCACGCAGAGG
* * * * * *
16106882 GGGACCTGACCGATCCCAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGC
833 GGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGC
16106940 ACGCTCGTTTCGTGGGTTGACTTAGG----C--A--T-A----C-G-----G---A-G-A--TCA
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
* * * ** *
16106979 TTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGCCGCACATGCTGGGCTCGATCATTTGCT
66 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * * * *
16107044 GGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGGTGGC
131 GGTGCCGCAATTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGC
* * **
16107109 ATTGGGGTTCCGACAATCGGGGGGGCC-GGGGGGGTGTGC-CTACATGATGTGTGATGGGTGAGG
196 ATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGGTGTGCGC-ACATGATGTGCGATGGGTGCTG
* ** * * *
16107172 GTTCTTGTTCCTGATATTGGCCCCGTATCCCTCATCAATCCTCGAGAACTCACACCCCCTTAAAG
259 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
16107237 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCGATTAAAGTGTCTGAAATGGGGACACTTTT
324 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
16107302 TTCCAATGGTCACAAAACCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
389 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* *
16107367 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCAAAAAAAATTTTAAAAAAT
454 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAAATTTTAAAAAAT
* *
16107432 CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATATAAAACGAGTCGTCTTACCATGAAACTT
518 CCCGAACC-TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
16107497 CACGTGAAGGCGTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGA
582 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
16107562 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
647 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* *
16107627 CTGGCCGACGTAGTGCCCACCCGCCCACTCGCTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
712 CTGGCCGACGTAGTG----CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * *
16107692 CCCAGTCTAAGATCGGACTGGACCAATGGTTGCGGCAGTAGGATCGGCAGCATGCAGCGGGGGAC
773 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCTGCAGCACGCAGAGGGGGAC
** * * ** *
16107757 CCGGCCGATCCCCGGCTTGCACATCCCACCCCTCTGGTCGACTGAGAACCCAC
838 CCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGC
* * * *
16107810 ACGCTCGTTTCGT-GGTTGACTTAGGCATATGGAGTTAATTCCTAGTCTAAGCATACGGAGTTCA
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
* * * * * *
16107874 TTCCCACTCTAAGATTGGACCGGACCGAGGGTTGTGACAGCACATGCTGGGCTCGAGCATGTGTT
66 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* ** * * * * * * *
16107939 GGTGTCGC-ATTGTTCTTCACCGGGGCACCACCGTCAGATCATCGCCGAAAAACCTGATCGACGG
131 GGTGCCGCAATT-TTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGG
*
16108003 CATTGGGGTTCCGACGATTCGGGGGGGCC--GGGGGGTGTGTGCACATGATGTGCGATGGGTG-T
195 CATTGGGGTTCCGACGA-TC-GGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
** * * *
16108065 GGGTACTTAACCCTTATATTGGCCCCCTATCCCTCACCAAACCTTGAGAACTCACACCCCATTAA
258 -GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
16108130 ATAGCATTTGAGATGTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTT
322 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
**
16108195 TTTTCAAATCATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
387 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
16108260 AAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
452 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAAATTTTAAAAA
* *
16108325 ATCCCGAACCGTAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
516 ATCCCGAACC-TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * * *
16108390 TTGACATGAAGGCTTAAGGAACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGCCACGCA
580 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* *
16108455 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGGCTTGCGCATCCCATC
645 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GGCTTGCGCATCCCGTC
* * * *
16108520 -CGCAT-G-C--C----TGCCCACCCGCTCATTTCATC----GG--T--G-----GGAGTTCATT
709 TCTC-TGGCCGACGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * *
16108563 CCAAGTCTAAGATCGGACCGGACTGAAGGTTGTGGCAGCAGGATC-GATAGCACGTAGAGAGGGA
773 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCTG-CAGCACGCAGAGGGGGA
* * * *
16108627 CCCGATCGATCCTCGGCTTGCGCATCCCACCCTTCTGGCCGACTGAGCACCCGT
837 CCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGC
* * * *
16108681 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCTCAGCCTAAGCATAC-AGAGTTC
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTC
** * * * * *
16108745 ATTCCCAGTCTAAGATCGGATTGGATCGATGGTTGTGGCAGAACATGCTGGGCTCGGGCATGTGG
65 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* * *
16108810 TGGTGCCGC-A-TTT-TTC-T----------TCGCCGGAGCATCGTCGGAGAACCTGACTGGCGG
130 TGGTGCCGCAATTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGG
**
16108861 CATTGGGGTTCCGACGATCGGGGGG--GTCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
195 CATTGGGGTTCCGACGATCGGGGGGCCG-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
16108924 GTACTTGGCCCTTATATTGGCCCCTTGTCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAG
259 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
16108988 AGCATTTGAGATTTTAGAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
324 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
16109053 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGCGCATGCCAACA
389 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * *
16109118 AAAATACAAGGATCACGTCTACCAAGTTTGTGGCCAAAACTCCTTTCGAAAAATTTTAAAAAATC
454 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATC
* * * * *
16109183 CTGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATTAAACTTC
519 CCGAA-CCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
16109248 ACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCTATAAAAATGGCATTGGCACGCAGAA
583 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* ** **
16109313 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTCACGCATCTTGTCTCTC
648 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * *
16109378 TGGGCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTC
713 TGGCCGACGTAGT----GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * * *
16109443 CTAATCTAAGATCGAACTGGATCGAGGGTTGTGGCAGCAGGAT-TGGTAGCACGTAGAGGGGGAC
774 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCT-GCAGCACGCAGAGGGGGAC
* * * *
16109507 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGT
838 CCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGC
* * *
16109560 ACGCTTGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
* * * * *
16109625 TTCCCAGTCTAAGATCTGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGACATGT-CT
66 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC-
* * *
16109689 TGGTGCCG-AATTTTTCTTC-ACTGGGGCACTATCGGT-GGAGCATCGCCGGAGAACCTGACCGA
130 TGGTGCCGCAA-TTTTCTTCGTC-GGGGCACCATC-GTCGGAGCATCGCCGGAGAACCTGACCGG
* * *
16109751 CGGCATTGGGGTTCCGACGAAT-GGGGCGCCCGGGGGGGTATGCG-----G-TG-G-G-T--G-G
192 CGGCATTGGGGTTCCGACG-ATCGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
16109803 -TGGTACTTGGCCCTTATATAT-GCCCCCTATCCCTCATCAAACCTTGAGAACTTACACCCCCTT
256 CTGGTACTTGGCCCTTATAT-TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
16109866 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTTTGGAATGGGGACAC
320 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * ***
16109931 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTGGCTGAATTTTTTTGTGCGCCCC
385 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
16109996 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT
450 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
16110045 ACGAAAAACC
Statistics
Matches: 7351, Mismatches: 833, Indels: 527
0.84 0.10 0.06
Matches are distributed among these distances:
835 77 0.01
836 203 0.03
837 163 0.02
838 10 0.00
839 2 0.00
840 1 0.00
841 115 0.02
844 1 0.00
845 1 0.00
846 4 0.00
847 66 0.01
848 5 0.00
849 3 0.00
854 13 0.00
855 178 0.02
856 183 0.02
857 82 0.01
858 47 0.01
860 2 0.00
861 3 0.00
862 11 0.00
863 1 0.00
865 1 0.00
866 19 0.00
867 35 0.00
868 6 0.00
869 47 0.01
870 108 0.01
871 118 0.02
872 116 0.02
873 635 0.09
874 9 0.00
875 4 0.00
876 2 0.00
877 9 0.00
878 14 0.00
879 236 0.03
880 7 0.00
881 54 0.01
882 182 0.02
883 2 0.00
884 17 0.00
885 4 0.00
886 2 0.00
887 1 0.00
888 6 0.00
889 1 0.00
890 12 0.00
891 47 0.01
892 167 0.02
893 1147 0.16
894 191 0.03
895 817 0.11
896 151 0.02
897 105 0.01
898 182 0.02
899 321 0.04
900 76 0.01
901 45 0.01
902 67 0.01
903 115 0.02
904 330 0.04
905 19 0.00
906 160 0.02
907 405 0.06
908 5 0.00
909 183 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
GGTGCCGCAATTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGC
ATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCC
GAACCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGACGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
AAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCTGCAGCACGCAGAGGGGGACCCGATCGA
TCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGC
Found at i:16105205 original size:26 final size:26
Alignment explanation
Indices: 16105169--16105219 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16105159 TTGACTTAGG
16105169 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
*
16105195 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
16105220 GATCGGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:16105813 original size:895 final size:899
Alignment explanation
Indices: 16102404--16110044 Score: 9672
Period size: 895 Copynumber: 8.6 Consensus size: 899
16102394 ACCAGACCGA
** * * * * * *
16102404 GGCTTGCGCATCCCGTCTCTCTGGCCGGCTGAGTGGCCGCTA-GCTCATTTCATGGGTTGACTTA
1 GGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGC-ACGCTCGTTTCGTGGGTTGACTTA
* * * *
16102468 GGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCGCA
65 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAA
* * ** * * **
16102533 CCTAGGGTTTCGATAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGG
130 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGG
* * * * * *
16102598 GCACCATCGCCGTAGCATCG-TCGGAGAACCTGACCAACGGCATTTGGGTTCCGGCGATTGGGGG
195 GCACCATCGTCGGAGCATCGCT-GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
*
16102662 G-CGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCT
259 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
16102725 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCT
324 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
16102790 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTTACAAAATCTTGTACA
389 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
16102855 CTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAG
454 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * *
16102920 TTTTGGGCCAAAACTCCTT-TCAAAAAAAGTTTAAAAAATCCCGAACCGCT-AAAAGTTTTAAAA
519 TTTGGGGCCAAAACTCCTTCTC-AAAAAATTTTAAAAAATCCCGAACCG-TAAAAAGTTTCAAAA
16102983 ATCATGAAAAATAGAAAATC-AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG-CCAT
582 ATCATGAAAAATAGAAAA-CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * * * *
16103046 TGTATGAATTTACAAGCCAAAAAAATGGTATTGGCATGTAGAATTATGGAGATGTGCCTAAACCC
646 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
* * *
16103111 ACCTACCACCCTATCGATCCACGGCTTGTGCAT-CCATCTCTCTGGTCGACGTAGTGCCCGCCCG
711 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-
* * *
16103175 CCTGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCA
773 CC-GCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * ** * * *
16103240 GACC-GATCCAAGGGTTGTGATAGCAGGATC-AGCAGCTTGCAGAGGGCGACTCGGTCGATCCCC
837 GACCGGA-CCGAGGGTTGTGACAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGATCGATCCCC
* * *
16103303 GAG-TTGCGCATCTCACCCCTCTGGACGACTGAGCGCCCTCACGCTCGTTTCGTGGGTTGACTTA
1 G-GCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * *
16103367 GG-ATTAAGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATC-A
65 GGCA-TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA
* * *
16103430 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGTCATGTGGTGGTGCCACA--TTT-TT----G
129 -ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCG
* * * ** * *
16103488 GGGCACCATCATCGGAGCATC-ATCGAGAACCTGACCGGTGGCATTGGTGTT-CTAGCGATCGGG
193 GGGCACCATCGTCGGAGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGG
16103551 GTGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
257 G-GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
16103615 CCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGCTT
321 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
16103680 GCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGATCACAAAATCTTGT
386 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
16103745 ACACTTGGAGTTTTTAGCTGAAGTTTTTTG-GTCATGCTAACAAAAATACAAGGATCACCTCTAC
451 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTG-CATGCCAACAAAAATACAAGGATCACGTCTAC
* *
16103809 CAAGTTTGGGGCCAAAACTCCTTC-CGAAAAAATTTTAAAAAATCTCGAATCG-AAAAAGTTTCA
515 CAAGTTTGGGGCCAAAACTCCTTCTC-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
*
16103872 AAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
579 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * * *
16103937 ATTGTATGAATTTACAAGCCATAAAAATGGTATTCGCACGTAGAAATATGAAGATGTCCCAAAAC
644 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
* * * *
16104002 CCTCCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCC
709 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* * * * *
16104067 TGCCTGCCGCCCGCTCGTTTCATTGGTTTGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
774 CG-C--CCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * ** ** * *
16104132 AGATCGGACCAAGGGTTGTGGTAGCAGGATCGACAGCTTGCAGAGGGGGATCCGGTCGATCCCC
836 AGACCGGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCC
* * * * * *
16104196 GAG-TTACGCATCTCGCCCCTCTGGACGACTGAGCGCCCGCACGATCGTTTCGTGGGTTGACCTA
1 G-GCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * * *
16104260 GG-ATTAAGGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCAGATC-A
65 GGCA-TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA
* * * * *
16104323 GACCGAGGGTTGCGGTAGCACATACTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCATCG
129 -ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCG
* * * *
16104388 GGGCACCATCATCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
193 GGGCACCATCGTCGGAGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGG
* *
16104453 GGGCCGGGGGTGGGTGGTGTACGCACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTACATTG
257 GGGCC-GGGG-GGGT-GTG--CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
16104518 GCCCCCTATCCCTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTATAG
317 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * ** * *
16104583 GTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGTTACTTTTTTCAAATGGCCACAAAATA
382 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * *
16104648 TTGTACACTTGGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCATGGC
447 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * *
16104713 TACCACGATTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAAACCGTAAAAAGTT
512 TACCAAGTTTGGGGCCAAAACTCCTTCTCAAAAAATTTTAAAAAATCCCG-AACCGTAAAAAGTT
*
16104778 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGG
576 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * *
16104843 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATACCTA
641 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* *
16104908 AACCCACCTACCACCCTATCGATCAACGGCATGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
706 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
* *
16104973 GCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC
771 GCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
16105038 AGACCAGACCGAGGGTTGCT-ACAGCAGGACCGACAGCACCACAGAGGGGGACCCGATCAATCCC
836 AGACCGGACCGAGGGTTG-TGACAGCAGGATCGACAGCA-CGCAGAGGGGGACCCGATCGATCCC
16105102 C
899 C
*
16105103 GGCTTGCGCATCCCTCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
1 GGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
16105168 GCATACGGAGTTCATTCCCAGTCTAAACATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAAC
66 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAAC
*
16105233 CGAGGGTTG-GGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
131 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
* *
16105297 CAACATCGTCGGAGCATCGCTAGAGAACCTGACCGACGGCA-TGGGGTTCCGAC-ATCGGGGGGC
196 CACCATCGTCGGAGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGC
** * * * * *
16105360 CGGGGGGGTGTATGCATATGATGTGTGATGGGTGCAGGTACTTGACCCTTATATT-GCCTCCTAT
261 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
16105424 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGC
326 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
16105489 CAGTAGCCATTAAAGTGTCTGAAATGGGGGCAC-TTTTTCAAATGGTCACACAATCTTGTACAGT
391 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
16105553 TTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
456 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * *
16105618 TAGGGCCAAAAAT-CTTTTCCAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
521 TGGGGCCAAAACTCCTTCT-CAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * *
16105682 GTGAAAAATAGAAAACGAGTCATCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
585 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
16105747 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAATCCCACCT
650 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
16105812 ACCACCCTATCGATCCACGGCTTGCGCATCCCCTCTCTTTGGCCGACGTAGTGCCCACCCGCCTG
715 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG----CCCGCCCG
* *
16105877 CCCACCCGCT-ATTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
776 CCCGCCCGCTCA-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* ** * * * ** *
16105941 CGGACTGAGGGTTACGACAGTAGGATTGACAGCACGCAGAAGGGGACCCGGCCAATCCCC
840 CGGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCC
* * ** ** * **
16106001 GGCTTGCCCGTCCTGCCTTTTTGGCCGGTTGAG-GACCCGCACGCTCGTTTCGTGGGTTGACTTA
1 GGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCG-CCCGCACGCTCGTTTCGTGGGTTGACTTA
* *
16106065 GGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTTG-
65 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-CGA
* * * * * **
16106129 ACCAAGGGTTGCGACAGCACATGCTGGGCTTGGGCAAGTACTGGTGCCGCATTTTTCTTCGTCGG
129 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGG
* * * *
16106194 GGCACCATCG-CTAGAGCATCGCCGGAGAACCTGATCGACGGCATTGGGGTTCCGGCGATCGGGC
194 GGCACCATCGTC-GGAGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-
* * *
16106258 GGGCCGGTGGGGTGTGCGCACCTGATGAGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
257 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
16106323 CGATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTG
322 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
** * *
16106388 CTGCCAGTAGCCATTAAAGTGTCTGAAATTTGGACACTTTTTTCGAATTGTCACAAAATCTTGTA
387 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
16106453 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
452 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * *
16106518 AGTTTGGGGCCAAAACGCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCCAAA
517 AGTTTGGGGCCAAAACTCCTTCTCAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
* * *
16106583 ATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATT
582 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
16106648 GTATGAATTTACAGGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCA
647 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
* *
16106713 CCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTAATGCCCGCCCGC
712 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
* * * * * ** *
16106778 CCGTCCGCTCATTTCGTCGGTTGGCTTAGGTATACAGAGTTCA-TCCCAATCTAAAATCAGGTCA
777 CCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * * * * * * *
16106842 GATCGAGGGTTG-CAGCAGCATGATCTACAGCACGTAGAGTGGGACCTGACCGATCCCA
842 GACCGAGGGTTGTGA-CAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCC
* * *
16106900 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
1 GGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
16106965 G----C--A--T-A----C-G-----G---A--GA--TCATTCCCAGTCTAAGATCGGACCGGAC
66 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAAC
* * * ** * *
16107004 TGAGGGTTGTGGCCGCACATGCTGGGCTCGATCATTTGCTGGTGCCGCATTTTTCTTCATCGGGG
131 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
* * ** *
16107069 CACCATCGCCAGAGCATCG-TCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACAATCGGGGGG
196 CACCATCGTCGGAGCATCGCT-GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGG
* ** * ** * *
16107133 GCCGGGGGGGTGTGC-CTACATGATGTGTGATGGGTGAGGGTTCTTGTTCCTGATATTGGCCCCG
259 GCCGGGGGGGTGTGCGC-ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
16107197 TATCCCTCATCAATCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
323 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
16107262 TGCCAGTAGCGATTAAAGTGTCTGAAATGGGGACACTTTTTTCCAATGGTCACAAAACCTTGTAC
388 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
*
16107327 ACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
453 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* **
16107392 GTTTGGGGCCAAAAATCCTTCAAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
518 GTTTGGGGCCAAAACTCCTTCTCAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* * * * *
16107457 TCGTGAAAAATATAAAACGAGTCGTCTTACCATGAAACTTCACGTGAAGGCGTAAGGGACCATTT
583 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
16107522 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
648 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
*
16107587 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCC
713 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * *
16107652 CACTCG--C--TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGG
778 CGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * * * * * * * **
16107713 ACCAATGGTTGCGGCAGTAGGATCGGCAGCATGCAGCGGGGGACCCGGCCGATCCCC
843 ACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCC
* * ** *
16107770 GGCTTGCACATCCCACCCCTCTGGTCGACTGAGAACCCACACGCTCGTTTCGT-GGTTGACTTAG
1 GGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * *
16107834 GCATATGGAGTTAATTCCTAGTCTAAGCATACGGAGTTCATTCCCACTCTAAGATTGGACCGGAC
66 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAAC
* * * * * *
16107899 CGAGGGTTGTGACAGCACATGCTGGGCTCGAGCATGTGTTGGTGTCGCATTGTTCTTCACCGGGG
131 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
* * * * * * *
16107964 CACCACCGTCAGATCATCGCCGAAAAACCTGATCGACGGCATTGGGGTTCCGACGATTCGGGGGG
196 CACCATCGTCGGAGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA-TC-GGGGG
* **
16108029 GCC-GGGGGGTGTGTGCACATGATGTGCGATGGGTG-TGGGTACTTAACCCTTATATTGGCCCCC
259 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCC
* * * * *
16108092 TATCCCTCACCAAACCTTGAGAACTCACACCCCATTAAATAGCATTTGAGATGTTACAGGTTTGC
323 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* **
16108157 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATCATCACAAAATCTTGTAC
388 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
16108222 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAA
453 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* *
16108287 GTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAA
518 GTTTGGGGCCAAAACTCCTTCTCAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
** * * *
16108352 TTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGACATGAAGGCTTAAGGAACCATTG
583 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
16108417 TGTGAATTTACAAGCCATAAAAATGGCATTGCCACGCAGAAATATGAAGATGTGCCTAAACCCAC
648 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * *
16108482 CTACCACCCTATCGATCTACGGGCTTGCGCAT--C--C-C-AT--CCG-C--A-T----GCCTGC
713 CTACCACCCTATCGATCCAC-GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
* * * *
16108531 CCACCCGCTCATTTCATC----GG--T--G-----GGAGTTCATTCCAAGTCTAAGATCGGACCG
777 CCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * * * * *
16108583 GACTGAAGGTTGTGGCAGCAGGATCGATAGCACGTAGAGAGGGACCCGATCGATCCTC
842 GACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCC
* * * * *
16108641 GGCTTGCGCATCCCACCCTTCTGGCCGACTGAGCACCCGTACGCTCATTTCATGGGTTGACTTAG
1 GGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * ** * *
16108706 GCATACGGAGTTCATTCTCAGCCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATTGGAT
66 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAAC
* * * * *
16108771 CGATGGTTGTGGCAGAACATGCTGGGCTCGGGCATGTGGTGGTGCCGCATTTTTCTTCGCC--GG
131 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
* *
16108834 -AGCATCGTCGGAG-AAC-CT---G-A-CTG---G-CGGCATTGGGGTTCCGACGATCGGGGGGG
196 CACCATCGTCGGAGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGG
* * * *
16108887 TC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTG
260 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
16108951 TCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTG
325 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
16109015 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
390 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
16109080 TTCGAGTTTTTAGCTAAATTTTTTTGCGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
455 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * *
16109145 TTGTGGCCAAAACTCCTT-TCGAAAAATTTTAAAAAATCCTGAATCGTAAAAAGTTTCAAAAATC
520 TTGGGGCCAAAACTCCTTCTCAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * *
16109209 ATGAAAAATAAAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGAGCATTGTA
585 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
16109274 TGAATTTACAAGCTATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
650 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* ** ** * *
16109339 ACCACCCTATCAATCCACGGCTCACGCATCTTGTCTCTCTGGGCGGCGTAGT----GCCCGCCCG
715 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
* * * * *
16109400 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAATCTAAGATC-GAACTGGA
780 CCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGA
* * * ** *
16109464 TCGAGGGTTGTGGCAGCAGGATTGGTAGCACGTAGAGGGGGACCCGATCGATCCCC
844 CCGAGGGTTGTGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCC
* * * * * *
16109520 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGTACGCTTGTTTCATGGGTTGACTTAG
1 GGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
16109585 GCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCTGATC-AGA
66 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-A
* * * *
16109649 CCGAGGGTTGCGGCAGCACATGCTGGGCTCAGACATGT-CTTGGTGCCGAATTTTTCTTCACTGG
130 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC-TGGTGCCGCATTTTTCTTCACCGG
* *
16109713 GGCACTATCGGT-GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAAT-GGG
194 GGCACCATC-GTCGGAGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTCCGACG-ATCGGG
* *
16109776 GCGCCCGGGGGGGTATGCG-----G-TG-G-G-T--G-G-TGGTACTTGGCCCTTATATAT-GCC
257 G-GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT-TGGCC
* *
16109827 CCCTATCCCTCATCAAACCTTGAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
320 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * *
16109892 TGCTGCCAGTAGGCATTAAAGTGTTTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
385 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * *** *
16109957 TACACTTCAAGTTTTTGGCTGAATTTTTTTGTGCGCCCCAAAAAAAATACAAGGATCACGTCTAC
450 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
*
16110022 CAAGTTTGGGGCCAAAAATCCTT
515 CAAGTTTGGGGCCAAAACTCCTT
16110045 ACGAAAAACC
Statistics
Matches: 5935, Mismatches: 650, Indels: 331
0.86 0.09 0.05
Matches are distributed among these distances:
854 9 0.00
855 176 0.03
856 173 0.03
857 90 0.02
858 22 0.00
859 2 0.00
860 1 0.00
862 5 0.00
863 2 0.00
865 1 0.00
866 21 0.00
867 1 0.00
868 2 0.00
869 50 0.01
870 104 0.02
871 118 0.02
872 121 0.02
873 612 0.10
874 5 0.00
875 3 0.00
876 1 0.00
877 2 0.00
878 3 0.00
879 242 0.04
880 13 0.00
881 53 0.01
882 182 0.03
883 6 0.00
884 7 0.00
885 3 0.00
886 2 0.00
887 3 0.00
888 7 0.00
889 4 0.00
890 4 0.00
891 36 0.01
892 150 0.03
893 622 0.10
894 39 0.01
895 757 0.13
896 143 0.02
897 103 0.02
898 186 0.03
899 438 0.07
900 83 0.01
901 45 0.01
902 60 0.01
903 111 0.02
904 320 0.05
905 19 0.00
906 167 0.03
907 406 0.07
908 8 0.00
909 192 0.03
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAAC
CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
CACCATCGTCGGAGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGC
CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
TGGGGCCAAAACTCCTTCTCAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC
CCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
GAGGGTTGTGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCC
Found at i:16106102 original size:26 final size:26
Alignment explanation
Indices: 16106066--16106118 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16106056 GTTGACTTAG
16106066 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16106092 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16106118 G
1 G
16106119 ATCGGACTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16107870 original size:26 final size:26
Alignment explanation
Indices: 16107834--16107886 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16107824 GTTGACTTAG
* * *
16107834 GCATATGGAGTTAATTCCTAGTCTAA
1 GCATACGGAGTTAATTCCCACTCTAA
*
16107860 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTAATTCCCACTCTAA
16107886 G
1 G
16107887 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCACTCTAA
Found at i:16108736 original size:26 final size:26
Alignment explanation
Indices: 16108706--16108758 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16108696 GTTGACTTAG
* *
16108706 GCATACGGAGTTCATTCTCAGCCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
*
16108732 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
16108758 G
1 G
16108759 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:16109615 original size:26 final size:26
Alignment explanation
Indices: 16109585--16109637 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16109575 GTTGACTTAG
16109585 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
16109611 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16109637 G
1 G
16109638 ATCTGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16110113 original size:26 final size:26
Alignment explanation
Indices: 16110083--16110135 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16110073 GTTGACTTAG
*
16110083 GCATACATAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
16110109 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16110135 G
1 G
16110136 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16111309 original size:26 final size:26
Alignment explanation
Indices: 16111280--16111332 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16111270 GTTGACTTAG
*
16111280 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16111306 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16111332 G
1 G
16111333 TTTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16111497 original size:26 final size:26
Alignment explanation
Indices: 16111467--16111517 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16111457 TGACTTAGGC
*
16111467 ATACGAAGTTCATTCTCAGTCTAAGG
1 ATACGAAGTTCATTCCCAGTCTAAGG
*
16111493 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
16111518 ATTGGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGG
Found at i:16111509 original size:185 final size:185
Alignment explanation
Indices: 16111191--16111539 Score: 529
Period size: 185 Copynumber: 1.9 Consensus size: 185
16111181 TGTGCGCACA
* * * * *
16111191 TAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCTACCCTTCTGGTCGGCTGAACACCCGCA
1 TAGAGAGGGACCCAACCGATCCCCGGCTCGCGCATCCCACCCCTCTGGTCGGCTGAAAACCCGCA
* * *
16111256 TGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
66 CGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
*
16111321 TCCCAGTCTAAGTTTGGA-CTGGACCGAGGGTTACAGCAGCAGGATCGGTAACACG
131 TCCCAGTCTAAGATTGGATC-GGACCGAGGGTTACAGCAGCAGGATCGGTAACACG
* * * *
16111376 TAGAGAGGGACCCGACCGATCCCTGGCTCGTGCATCCCACCCCTCTGGTCGGCTGAAAACCCGTA
1 TAGAGAGGGACCCAACCGATCCCCGGCTCGCGCATCCCACCCCTCTGGTCGGCTGAAAACCCGCA
* * *
16111441 CGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCTCAGTCTAAGGATACGGAGTTCAT
66 CGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
*
16111506 TCCCAGTCTAAGATTGGATCGGACTGAGGGTTAC
131 TCCCAGTCTAAGATTGGATCGGACCGAGGGTTAC
16111540 GGAAGCACAT
Statistics
Matches: 146, Mismatches: 17, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
185 145 0.99
186 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.24
Consensus pattern (185 bp):
TAGAGAGGGACCCAACCGATCCCCGGCTCGCGCATCCCACCCCTCTGGTCGGCTGAAAACCCGCA
CGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
TCCCAGTCTAAGATTGGATCGGACCGAGGGTTACAGCAGCAGGATCGGTAACACG
Found at i:16111739 original size:487 final size:486
Alignment explanation
Indices: 16110928--16112165 Score: 1703
Period size: 487 Copynumber: 2.5 Consensus size: 486
16110918 GTTTATCCGG
** * * * *
16110928 CCCCTCTGGCCAACTGAGCACCCGCACGCTCGTTTCAT-GGTTGACTTAGTCATACGGAGTTCAA
1 CCCCTCTGGCCGGCTAAGAACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
16110992 TCCCAGTCT-AGGCATACGGAGTTCATTCCCAGTATAAGATCAGATCGGATTGAGGGTTACGGCA
66 TCCCAGTCTAAGG-ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTACGGAA
* ** ** *
16111056 GCACATGCTAGGCTCGGGCATGTGTTGGTGCCGTATTTTTTTTCACCGGAACACCATCGCCAGAG
130 GCACATGCTAGGCTC-GGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAG
** *
16111121 CATCGTCGGAGAACTTGACCAGCGGCATTGGGGTTCCGGTGATCGAGGGGGTCGGGGGGGTGTGC
194 CATCGTCGGAGAACTTGACCAGCGGCATTGGGGTTCCGACGATCG-GGGGGGCGGGGGGGTGTGC
* *
16111186 GCACATAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCTACCCTTCTGGTCGGCTGAACAC
258 GCACATAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCCACCCTTCTGGCCGGCTGAACAC
*
16111251 CCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-AGA
323 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-A
* ** ** * *
16111315 GTTCATTCCCAGTCTAAGTTTGGACTGGACCGAGGGTTACAGCAGCAGGATCGGTAACACGTAGA
387 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGCAGCAGGATCAGCAACACGTAGA
* *
16111380 GAGGGACCCGACCGATCC-CTGGCTCGTGCATCCCA
452 GAGGGACCCGACCGATCCTC-GACTCGCGCATCCCA
* * *
16111415 CCCCTCTGGTCGGCTGAA-AACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCA
1 CCCCTCTGGCCGGCT-AAGAACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* *
16111479 TTCTCAGTCTAAGGATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTACGGAA
65 TTCCCAGTCTAAGGATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTACGGAA
*
16111544 GCACATGCTAGGCTCGGCATGTGTTGGTGCCGTATTTTTCTTCGTTGGGGCACCATCGCCGGAGC
130 GCACATGCTAGGCTCGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGC
* *
16111609 ATCGTCGGAGAACTTGACCAGCGGCATTAGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCG
195 ATCGTCGGAGAACTTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGGTGTGCG
** * * * *
16111674 CACATAGAGGGGGACCCGGCTGATCCTCGGCTTGTGCATCCCGCCCTTCTGGCCGGCTGAACACC
259 CACATAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCCACCCTTCTGGCCGGCTGAACACC
16111739 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGT
324 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGT
* * * *
16111804 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCCGCAGTAGGATCAGCAACACGTAGGGA
389 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGCAGCAGGATCAGCAACACGTAGAGA
* * *
16111869 GGGACCCGATCGATCCTCGACTTGCGCATCCCG
454 GGGACCCGACCGATCCTCGACTCGCGCATCCCA
** *
16111902 CCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
1 CCCCTCTGGCCGGCTAAGAACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * * * * * *
16111967 TCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGTAG
66 TCCCAGTCTAAGGATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTACGGAAG
* * * * *
16112032 CACATGCTGGGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGC
131 CACATGCTAGGCTCG-GCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGC
* * ** * **
16112097 ATCGCCGGAGAACCTGACTGGCGACATTGGGGTTCCGACGATCGGGGCTGCGGGGGGGTGTGCGC
195 ATCGTCGGAGAACTTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGC
16112162 ACAT
260 ACAT
16112166 TATGTGCGAT
Statistics
Matches: 661, Mismatches: 82, Indels: 16
0.87 0.11 0.02
Matches are distributed among these distances:
486 7 0.01
487 470 0.71
488 181 0.27
489 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (486 bp):
CCCCTCTGGCCGGCTAAGAACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGGATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTACGGAAG
CACATGCTAGGCTCGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCA
TCGTCGGAGAACTTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCA
CATAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCCACCCTTCTGGCCGGCTGAACACCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTC
ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGCAGCAGGATCAGCAACACGTAGAGAGG
GACCCGACCGATCCTCGACTCGCGCATCCCA
Found at i:16111804 original size:26 final size:26
Alignment explanation
Indices: 16111767--16111819 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16111757 GTTGACTTAG
*
16111767 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16111793 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16111819 G
1 G
16111820 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16111988 original size:26 final size:26
Alignment explanation
Indices: 16111952--16112004 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16111942 GTTGACTTAG
* *
16111952 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
16111978 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
16112004 G
1 G
16112005 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:16114434 original size:26 final size:26
Alignment explanation
Indices: 16114398--16114450 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16114388 GTTGACTTAG
*
16114398 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16114424 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16114450 G
1 G
16114451 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16115096 original size:11 final size:11
Alignment explanation
Indices: 16115080--16115104 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
16115070 TTGGCTTAGG
16115080 CATACGGAGTT
1 CATACGGAGTT
16115091 CATACGGAGTT
1 CATACGGAGTT
16115102 CAT
1 CAT
16115105 TCCCAGTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (11 bp):
CATACGGAGTT
Found at i:16117054 original size:26 final size:26
Alignment explanation
Indices: 16117018--16117070 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16117008 GTTGGCTTAG
16117018 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16117044 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16117070 G
1 G
16117071 ATTAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16117583 original size:901 final size:900
Alignment explanation
Indices: 16115223--16126459 Score: 11239
Period size: 901 Copynumber: 12.4 Consensus size: 900
16115213 TGAGCGCCCG
* * * *
16115223 TACGGAGTTGATTCCCAGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA
1 TACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
** * *
16115288 GGGTTGCGGCCGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCAC
66 GGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCAC
* * * * *
16115353 CATCGCCGGAGCATCGTCGGAGAACTTGATCGACGGCATTGGGGATCCGACGATC-GGGGGGCC-
131 CATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG
16115416 A-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
196 AGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
16115480 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCT
261 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
16115545 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTT
326 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
*
16115610 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC-ATCTACCAAGTT
391 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGA-CTAACAAGTT
* * * * *
16115674 TGGTGCCAAAAAGT-TTTTTGAAAAAATTTTAAAAAATCCCGAACC--ACAAAAGTTTCAAAAAT
455 TGGGGCC-AAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTA-AAAAGTTTCAAAAAT
* ** * *
16115736 TGTGAAAAATAGGAAACGAGTGGTATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
518 CGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
**
16115801 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGAATAAACCCACC
583 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * * *
16115866 TACCACCCAATCAATCCACGACTTGCACATCCCATCTCTCTGGCCGGTGTAGTGCCCGCCTGCTC
648 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-C--CT-
16115931 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGA
709 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-A
* * * * * * * * *
16115995 CCGGACCAAGGGTTGTGGTAGCATGATCGGCAGCATGTAGAGGGGGACCTGGCCGATCCCCAGCT
773 GCGAACC-AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCT
** *
16116060 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCTTGCACGCTCGTTTCGTGGGTTGACTTAAGCA
837 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * **
16116124 TAC-AGAGTTCATTTCCAGTCTAACCATAGGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCG
1 TACGA-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
** * * * *
16116188 AGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTCCTGGTGCCA-CATTTTTCTTCGTCGGTGA
65 AGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CAGCATTTTTCTTCGTCGGGGC
** * ** **
16116252 ACCATCGTCGGAGCATCGTAGGAGAACCTGACCGGCGGCATTTTGGTTCCGGTGATCGGGGGGGC
129 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
*
16116317 C--GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
194 CGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
16116380 TCCCTCATCAAACCTCGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
259 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
16116445 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACAC
324 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * *
16116509 TTCAAGTTTCTAGCTGGATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
389 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGACTAACAAGT
* *
16116574 TTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATC
454 TTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATC
*
16116639 GTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
519 GTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
16116704 TGAATTTACAAGCCACAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
584 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
16116769 ACCACCCTATAGATCCACGGCTTGCGCATCCCGTCTCTCTTGCCGACGTAGTGCCCGCCTGCCCG
649 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCG
* *
16116834 CCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCGAAGCGAAC
714 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAAGCGAAC
* * * * * *
16116899 CATGGGTTGTGGCAGCAGGATTGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCATCTTGTGCA
779 CA-GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCA
* * * *
16116964 TCCCG-CTCTCTGGCCAGCTGAGCCCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
843 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * *
16117021 TACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCGGACCGA
1 TACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
** * * **
16117086 GGGTTGCGGTAGCACATGCTATGCTCAGGCATG-G-TGGTGCAGCATTTTTCTTCGCCCTGGCAC
66 GGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCAC
* * * * * **
16117149 CATCGTCAGAGCATCACCGGAGAACCTGACCGACGACATTGGGGTTCCAAAGATCGTCGGGGCCG
131 CATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-
*
16117214 GGAGGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
195 -GA-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
16117279 ATCCCTCACCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
258 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
16117344 GCCAGTCGCCATTAAAGTGTCTGAAATGGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
323 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
**
16117409 CTTCGAGTTTTTAGCTGAATTTTTTTGCACATGCCAACAAAAATACAAGGATCACGACTAACAAG
388 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGACTAACAAG
* * **
16117474 TTTGGGGCCAAAACTCCTTTCAAAAAAATTTTTAAAAATCCTGAACCGTAAAAAGTTTCAAAAAT
453 TTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAAT
* * * *
16117539 CATGAAAAATAAAAAACAAGTCGTCTTACCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
518 CGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
16117604 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACC
583 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
*
16117669 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTA------G--TGCCC
648 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCC
* * * * * *
16117726 GCCCGCACGTTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCCAATCTAAGATTGGA-CCAG
713 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAAGCGA-
* * * * * *
16117790 ACTGAGGATTGCGGTAGCAGGATCGGCAGCACACAGAGAGGGACCCGACCGATCCCCAGCTTGCA
777 AC-CAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCG
16117855 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
841 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * *
16117915 TAC-AGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCG
1 TACGA-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * ** * * ** * *
16117979 AGGGTTAC-ATCAGTGCAAGCTGGGCTCGGGCATGTGCTGGTGCCA-TATTTTTCTTCACCGAGA
65 AGGGTTGCGGT-AGCACATGCTGGGCTCGGGCATGTGCTGGTG-CAGCATTTTTCTTCGTCGGGG
* * * * * * *
16118042 CACCATC-ACTGGAGCATCGCCGGAGAACCTTACCGGCGGCATTGGTGTCCCGATGAT--AGGGG
128 CACCATCGTC-GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
16118104 GCCGAGGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
192 GCCGAGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
16118169 GTATCCCTCATCAAACCTCGAGAACTCACACCCCC-TAAAGAGCATTTGAGATTTTACAAGTTTG
256 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
16118233 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGTGACATTTTTTTCAAATGGTCACAAAATCTTGTA
321 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
*
16118298 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGACTACCA
386 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGACTAACA
* * ***
16118363 AGTTTGGGGCTAAAACTCCTTTCAAAAAAATTTT-AAAAATCTTGAACCGTAAAAAGTTTCAAAA
451 AGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAA
* * * *
16118427 ATCGTGAAAAATAAAAAACAAGTCGTCTTACCGTGAAACTTCACTTGAAGGCTTAAGGGACCATT
516 ATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
*
16118492 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCA
581 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* *
16118557 CCTACCACCCTATCGATCCACGGCTTGCGAATCCCGTCTCTCTGGTCGGCGTA------G--TGC
646 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGC
* * * * * *
16118614 CCGCCCGCTTGTTTCGTCGGTTGGCTTAGGAATACAGAGTTCATTCCCAGTCTAAGATTGGA-CC
711 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAAGCG
* * * * *
16118678 AGACCGAGGGTTACGGTAGGAGGATCGGCAGCACACAGAGAGGGACCCGACCGATCCCCAGCTTG
776 A-ACC-AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTG
* * *
16118743 CACATCCCGCCCCTGTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
839 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * *
16118805 TAC-AGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCA
1 TACGA-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * * * *
16118869 AGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCA
65 AGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCA
* ** * *
16118934 CCCTCACCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGAGGTTCCGGCGATC-GGGGGG-C
130 CCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC
* * *
16118997 --TGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTAT
195 GAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
16119060 CCCTCATGAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
260 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
16119125 CAGTAGCCATTAAAGTGTCTGAAATGGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
325 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * *
16119190 TCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATT
390 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGACTAACAAGTT
**
16119255 TGGGGCC-AAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCG
455 TGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCG
* * *
16119319 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTCT
520 TGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
16119384 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
585 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
16119449 CCACCCTATCGATCCACGGCTTGCGCATTCTGTCTCTCTGGCCAGCGTCGTGCCCGTCCGCCCGC
650 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-G-G-CGT---AGT--GCCCGC
* * *
16119514 CTGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCTAGTCTAAGATC-A
707 CTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA
* *** * * * *
16119578 GATCGGATTGAGGGTTGCGGTAGCAGGATCGGCA-CACGCGGAGGGGGACCCGACCAATCCCCGG
772 -AGC-GAACCAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAG
* * *
16119642 CTTGCCCATCCCGCCCTTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
835 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
16119707 A
900 A
*
16119708 TAC-AGAGTTCATTCCCAATCTAAG-AT-C-G-G---------A-TC---G---A-ACC-GA-C-
1 TACGA-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * *
16119748 --GGTTGCGGTAGTACATGCTGGGCTCAGGCATGTGCTGGTGCCA-TATTTTTCTTCGTCGGGGC
65 AGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CAGCATTTTTCTTCGTCGGGGC
* ** * * *
16119810 ACCATCGCCGGAGCATCATCGGGGAACCTTACCGACGGTATTGGGGTTCCGACGATCGGGGGGGC
129 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
* *
16119875 CGAGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCT
194 CGA-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
16119940 ATCCCTCATCAAACATCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
258 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * *
16120005 GCCAGTAGACATTAAAGTGTTTGGAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACA
323 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * *
16120070 CTTCGACTTTGTAGCTGAA---TTTT-T---T-----------TACAAGGATCGCGTCT-ACAAA
388 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGACTAAC-AA
* ** * * **
16120116 GTTTGGGGCAAAAAAACCTTCCG-AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAA
452 GTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAA
* * * *
16120180 TCGAGAAAAATAAAAAATGAGCCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
517 TCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
16120245 TATGAATTTACAAGCCATAAAAATGGCATTGACATGCAGAAATAAGAAGATGTGCCCAAACCCAC
582 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * *
16120310 CTACCACCCTATCGATCCACGGCTCGCGCATCCTGTCTCTCTGGCTGGCGAAGTGCCCGCCCACC
647 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CC
* * * * *
16120375 CGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATC-AG
708 TGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-
* ** * * *
16120439 ACCGAACCGAGGGTTGCAACATCAGGATCGACAGCACACAGAGGGGGACCCGACCGATCCCC-GA
772 AGCGAACC-AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAG-
**** * * * *
16120503 CTTGCGCATCCCATTTCTCTGGCTTGG-TGAGCG-CCGCACGCTTGTTTCATGGGTTAACTTAGG
835 CTTGCGCATCCCGCCCCTCTGGC-CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
16120566 CA
899 CA
* ** * * * *
16120568 TAC-AGAGTGCATTCCCAGTCTAAG-AT-CGGACCAAACTGAGGGTTACGGCAG-C-AGGATTAG
1 TACGA-AGTTCATTCCCAGTCTAAGCATACGG----AGTTCA---TT-C-CCAGTCTAAGATCAG
* * * * * * ** * ** * *
16120628 CAGCACACAGAGGG-GGACCCGGTCGATCCCCGGCTTGCGCTTCCCGCCCCTCCGGTCGTCTGAA
56 -ACCAGACCGAGGGTTG---CGGT--AGCACATGC-TGGGC-T--CGGGCAT---GT-G-CTG-G
* * ** * * * * *
16120692 TGC-CCGAATGCTCATTTCGT-GGGTTG-ACTTAGGCATACGGAGTTCATTC-CC-AATCTAAGC
105 TGCAGC-ATTTTTC--TTCGTCGGG--GCAC-CA-TCGT-CGGAG--CA-TCGCCGGA--GAA-C
* ** * *** * * *** * * * * *
16120752 AT-ATGGA-GTTCATTCCCAG-T-CAAAGATCAGATCGGACCGA--GGGTTGCGACAGCACTTGC
156 CTGACCGACG-GCATT-GGGGTTCCGACGATC-GGGGGGGCCGAGGGGGGTGTG-C-GCACATGA
* * * * * * * * *** * *
16120811 TG-G-GCTCGG-GCAT-GTGCTGGTGCCGTATTTTTCTTCGTCGGGGC-A-CCATCGTCGGAGAA
216 TGTGCGATGGGTGC-TGGTACTTG-GCC---CTTATATT-GGC-CCCCTATCCCTCATC--A-AA
* ** ** * ** * ** * * ** ** *
16120870 CCT-GACTG-GCATCATTGGGGTTCCGACGATCAGGGGGC-TGGGGGGTGTGCACACATGATG-T
271 CCTCGA--GAAC-TCA------CACC--CCCTTAAAGAGCATTTGAGAT-TTTACAGGT-TTGCT
* *** ** * * * * ** * **
16120931 GCGATGGGT-GCTGGT-ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCATGAGAACT
323 GCCA---GTAGCCATTAAAGT-G-TCTGAAATGGGGACACT-T---TTTTC-AA--ATG-G---T
*** ** * * * ** ** * ** *
16120994 CACAACCCCTTAAAGAGCGTTTGAGATTTTA-C--AGGTTTGCTGCCAGCA-GCCATTAAAGTGT
372 CACAAAATCTTGTACA-C-TTCGAGTTTTTAGCTGAATTTTTTTG--TGCATGCCAACAAA---A
* * *** ** * *
16121055 CTGAAATAGGGA-CACTTTTTTCAA--AT-GGTCACAAAATCTTGTACACTTT-GAGTTTTTAGC
430 AT-ACA-A-GGATCACGACTAACAAGTTTGGGGC-CAAAA-C---T-C-CTTTCGA------A--
** * **
16121115 TGAATTTTTTTGTGCATGCCACCAAAAAT-ACAAGGATCACGCCTACCAAGTTTGGGCTCAAAAT
477 --AA---AATT-T---T---A--AAAAATCCCAA--A-C-CG--TAAAAAG--T----T------
16121179 GCCTTCTGAAAAAAATTTAAAAAATCCCGAATCGTAAAATGTTTCAAAAATCATGAAAAATAGAA
510 ----TC---------------AAA-----AATCG-----TG-----AAAA--AT-----A-A-AA
* *
16121244 AACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGC
532 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *** * * *
16121309 CATAAAATTGGCTTTGGCACATAAAAATAGGAAGATGTGCC-AAACCCACCAACCACCCTATCGA
597 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *
16121373 TCCACGGATTGCGCATCCTGTCTCTCTAGCCGGCGTAGTGCCTGTCCGCCCGCCCGCCCGCTCGT
662 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-C---CCGCCTGCCCGCCCGCTCGT
* * ** * * ***
16121438 TTTGTCCGTTGTTTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGAATG-GATGGAGGGTT
723 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCGAA-GCGAACCAGGGTT
* * * * * * *
16121502 GCGGTAGCAGGATCAGCAGCATGCAGAAGGGGACCCCG-TCGATCCCCGGCTTGCGCATCGCGCC
786 GCGGCAGCAGGATCGGCAGCACGCAGAGGGGGA-CCCGACCGATCCCCAGCTTGCGCATCCCGCC
** * * * *
16121566 TTTCTGGCCTGCTGAGCGCCCCGCATGCTCGTTTTGTGGGTTGACTTAAGCA
850 CCTCTGGCCGGCTGAGCG-CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * ** * *
16121618 TACGGAGTTCATTCCCAGTCTAATCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACTGA
1 TACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* * * * *
16121683 GGGTTGCGGCAGCTCATGTTGGGCTCGGGCATGTGCTGGTGTCA-TATTTTTCTTCGTCAGGGCA
66 GGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CAGCATTTTTCTTCGTCGGGGCA
* * * * * * * * *
16121747 CCATC-ACTGGAGCATCACTGGAGAACCTTACCGGCGGCATTGGTGTCCCGACAATTGGGGGGGC
130 CCATCGTC-GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
* * *
16121811 CGAGGGGGGTGTGCGAACATGATGTTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTA
194 CGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
16121876 TCCCTCATCAAACCTCGAGAACTCACACCCCC-TAAAGAGCATTTGAGATTTTACAGGTTTGCTG
259 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
16121940 CCAGTAGCCATTAAAGTGTCTGAAATGGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
324 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * * *
16122005 TTCAACTTTTTAACTGAATTTTTTT-TACATGCCAACAAAAATACAAGGATCATGTCT-ACAAAG
389 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGACTAAC-AAG
* * * **
16122068 TTTGGGGCCAAAAATCC-TTCTGAAAAAATTTAAAAAAATCCCAAACCGCAAAAAGTTTTGAAAA
453 TTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAA
* * *
16122132 TCGTGAAAAATAAAAAAAGAGCCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
517 TCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
16122197 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCCAAACCCAC
582 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * * *
16122262 CTACCACCCTATCGATCCACGACTTGTGCATCCCGTCTTTCTGGCCGACGTAGTGCCCGCCCGCT
647 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCC
* * * *
16122327 TGCCCGCTTGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGACAG-
712 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GA-AGC
* * * * *
16122391 G-ACTGAAGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCAACCGATCCCC-GACTT
775 GAAC-CAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAG-CTT
* * * *
16122454 GCACATCCCACCCCTCTGGCAGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCA
838 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * *
16122517 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCAGACTAGACCGA
1 TACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* * * * * *
16122582 GGGTTGTGATAGCACATGCTGGGCTCGGGCATGTGCTGGTTCCGTATTTTTCTTCGCCGGGGCAC
66 GGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCAC
* * * * * * * * *
16122647 CATCGTCAGAGCATCACCGGAGAACCTGATCGGCGGCATTAGGGTTCCGATGATCGGCGTGGTC-
131 CATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG
* * * *
16122711 AGTGGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTAGTTGGCCCTTATATTGGCACCCTAT-
196 AGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * * *
16122775 -CTC-TTAAACCTCAAGAACTCACACCCCTTTAAACAGCATTTGAGATTTTATAGGTTTGCTGCC
261 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
16122838 AGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCGTGTACACTT
326 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
*
16122903 CGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC-A-TATACCAAGT
391 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGACTA-A-CAAGT
* * **
16122966 TTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATC
454 TTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATC
* *
16123031 GTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
519 GTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
16123096 TGAATTTACAAGCCAAAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCT
584 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* ** * *
16123161 ACCACCCTATCGATCCATGGCTTATGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGTCCG
649 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-T--G
* * * * *
16123226 TCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCTAGTCTAAGATC-AGAC
710 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-AG
* * * * * * * * * ** * *
16123290 CAAACTGAGGGTTGCGACATCAAGATTGGCAGCACACAGAGGGGGGCTCGGTCGATCCTCGGCTT
774 CGAAC-CAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTT
* ** * * * * * *
16123355 GTGCATATCGCCCCTCTGGCCGGTTGGGCGCCGGCACGCCCGTTTCATGGGTTGACATAGGCA
838 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * * *
16123418 TACGGAGTTCATTCCCAGTCTAGGCATACGGAGTTCATTCACAGTCTTAGATCAAACCAGACCGA
1 TACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
** * *
16123483 GGGTTGTAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCAC
66 GGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCAC
* * * * * * * *
16123548 CATCATCGGAGCATCGTCGGAGAAGCTGGCCGACAGCATTGGCGTTCTGATGATCGGGGGGGCCG
131 CATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG
*
16123613 AGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATA
196 AGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
16123678 CCTCATTAAACCTCGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCC
261 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * * * * *
16123743 AGTAGCAATTAAAGTCTCTGAAATGGTGACACTTTTTTTAAATTGTCACAAAATCGTGTACACTT
326 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * *
16123808 CTACTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAATGATCAC-ATCTACCAAGTT
391 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGA-CTAACAAGTT
* * * * *
16123872 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAGTCCCAAACCG-CAAAAGTTTCAAAAGTCA
455 TGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCG
* *
16123936 TGAAAAATAGAAAACGAGGCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
520 TGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
16124001 GAATTTACAAGCCAAAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
585 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
16124066 CCACCCTATTGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCTGCCCGCTCGT
650 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGC-C--
* * * ** *
16124131 CTGCCCGCTCGTTTCGTCGATTGGCTTAGGAATATGGAGTTCATTCCTTGTCTAAGATCGGA-CT
712 C-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAAGC-
* * * * * * *
16124195 GGACCAAAGGTTGTGGCAGTAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCTCGGCTTG
775 GAACC-AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTG
* ** * * * * * * *
16124260 TGCATATCGCGCCTCTGGCCGGCTGGGCGTCGGCATGCTCGTTTCGTGGGTTAACATAGGCA
839 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * *
16124322 TAC-AGAGTTCATTCCCAGTCTAGGCATATGGAGTTCATTCACAGTCTAAGATCAGACCAGACCG
1 TACGA-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * * *
16124386 AGGGTTACAGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTA-CATTTTTCTTCGTCGGGGC
65 AGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGC-AGCATTTTTCTTCGTCGGGGC
* * * * * * * **
16124450 ACCATCATCGGAGCATCGTCGGAGAACCTGACAGGCGACATTGGGGTTCTGGCGATCTAGGGGGC
129 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
* * * *
16124515 C--GGGGGGTGTGCGCAAATGATGTGCGATGGGAGCCGATACTTGGCCCTTATATTGGCCCCCTA
194 CGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
16124578 TCCCTTATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
259 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
16124643 CCAATAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAACGGTCACAAAATCTTGTACAC
324 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
16124708 TTCGAGTTTTTAGCTGAATTTTTTTATGCATTCCAACAAAAATACAAGGATCACGTCTACCAAGT
389 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGACTAACAAGT
* **
16124773 TTGGGGCCAAAACTCC--T-GAAAAAATTTGAAAAAATCCCAAACCACAAAAAGTTTCAAAAATC
454 TTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATC
* *
16124835 GTGAAAAATAAAAAACGAGTCGCCTTGCCATGAAATTTCACGTGAAGGCTTAAGGGACCATTGTA
519 GTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
**
16124900 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
584 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
16124965 ACCACCCTATCGATTCACGACTAGCGCATCCCGTCTCTCTGGCCGGCGTA------G--TGCCCG
649 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCG
* * * *
16125022 CCCGTTCGTTTCGTCAGTGGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT--AAGATCGG
714 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAAG--CGA
** * * * * *
16125085 ACCGAGGGTTGCGGCAGCAGGATCGATAGCATGTAAAGGGGGACCCGACCGATCCCCGGCTTACG
777 ACC-AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCG
** * *
16125150 CAT-CCGCCCCTCTGGTTGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
841 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* ** * * * *
16125209 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCATAGTCTATGATCTGATCAGACCAA
1 TACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* * * ** *
16125274 GGGTTGC-GTAGCACATACTGGGCTCGAGCATGTGCAGGTGTTGCATTTTTCTTTGTCGGGGCAC
66 GGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCAC
* ** * *
16125338 CATCATCGGAGCAAT-GCC--AG-A--T-----A--GCATTAAGGTTTCGGCGATCGGGGGGGCC
131 CATCGTCGGAGC-ATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC
* * * * *
16125390 GGGGGGGGGGGTGTACACACATGATGTGCGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCTCC
195 ---GAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *
16125455 TATCCCTCATCAAACCTTGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGC
257 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
** * *
16125520 TATCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAACTGGTCACAAAATCTTGT-C
322 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
16125584 AACTTCGAGTTTTTAGCTGAATTTTTTTGTCCATCCCAACAAAAATACAAGGATCACGTCTAACA
387 -ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGACTAACA
* * * ** * **
16125649 AGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTAAACCACAAAACGTTTTGAAA
451 AGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAA
* * *
16125714 ATCCTTGAAAAATAGAAGACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
516 AT-CGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
16125779 TGTATGAATTTACAAGCCTTAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCGTAAACCC
580 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
** * * * *
16125844 ACCTACCACCCTATCGATCCACGGCTTGCAAATCCCGTCTCTCTAGTCAGGCGTAGTACCCGCCC
645 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GGCCGGCGTAGTGCCCGCCT
* * *
16125909 GCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC--AG
709 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAAG
* * * * * *
16125972 ACTAGACCGAGGGTTGTGGCAGCAGGATTGACAGCACGCAGAGGGGGACCCGATCGATCCCCAGT
774 -CGA-ACC-AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGC
* ** **
16126037 TTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCTTGCTCGTTTCACGGGTTGACTTAGGCA
836 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
*
16126102 TACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A--CT-AGAT-----C--A---A
1 TACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* * * * *
16126141 GGGTTACGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGTAC
66 GGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCAC
* * ** *
16126206 CA---T-----CA---CCGGAGAACTTGACCGGCAACATTGGGGTTCCGACGATCGAGGGGGCC-
131 CATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG
* *
16126259 -GGGGGTTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATC
196 AGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
16126323 CCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCC
261 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
16126388 AGTAACCGTGAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
326 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
16126453 CGAGTTT
391 CGAGTTT
16126460 GGGGCCAAAA
Statistics
Matches: 8718, Mismatches: 1186, Indels: 901
0.81 0.11 0.08
Matches are distributed among these distances:
856 5 0.00
857 2 0.00
858 2 0.00
859 5 0.00
860 140 0.02
861 51 0.01
862 3 0.00
863 2 0.00
864 409 0.05
865 11 0.00
867 7 0.00
868 50 0.01
869 23 0.00
870 1 0.00
872 1 0.00
874 22 0.00
875 1 0.00
877 103 0.01
878 11 0.00
879 252 0.03
880 4 0.00
881 3 0.00
882 239 0.03
883 159 0.02
884 10 0.00
885 1 0.00
886 64 0.01
887 217 0.02
888 463 0.05
889 7 0.00
890 550 0.06
891 203 0.02
892 212 0.02
893 192 0.02
894 143 0.02
895 98 0.01
896 184 0.02
897 399 0.05
898 188 0.02
899 224 0.03
900 476 0.05
901 915 0.10
902 661 0.08
903 214 0.02
904 663 0.08
905 222 0.03
906 7 0.00
907 5 0.00
908 7 0.00
909 2 0.00
910 10 0.00
911 19 0.00
912 5 0.00
913 18 0.00
914 29 0.00
915 6 0.00
916 4 0.00
917 7 0.00
918 4 0.00
922 5 0.00
924 2 0.00
925 4 0.00
926 15 0.00
927 6 0.00
928 3 0.00
929 10 0.00
930 1 0.00
933 2 0.00
934 2 0.00
936 3 0.00
937 1 0.00
939 1 0.00
940 11 0.00
941 2 0.00
942 11 0.00
952 1 0.00
956 1 0.00
958 4 0.00
960 5 0.00
961 7 0.00
962 3 0.00
963 13 0.00
964 7 0.00
965 1 0.00
966 2 0.00
967 3 0.00
971 1 0.00
972 2 0.00
973 1 0.00
975 2 0.00
977 2 0.00
979 1 0.00
980 2 0.00
981 1 0.00
983 2 0.00
984 2 0.00
985 3 0.00
986 1 0.00
987 5 0.00
988 9 0.00
989 8 0.00
990 8 0.00
991 4 0.00
992 12 0.00
993 9 0.00
994 16 0.00
995 5 0.00
996 1 0.00
997 1 0.00
998 3 0.00
1000 3 0.00
1001 3 0.00
1004 1 0.00
1005 11 0.00
1006 4 0.00
1007 4 0.00
1008 13 0.00
1009 5 0.00
1010 1 0.00
1011 2 0.00
1017 4 0.00
1018 6 0.00
1019 3 0.00
1020 3 0.00
1021 14 0.00
1022 24 0.00
1023 9 0.00
1024 529 0.06
1025 497 0.06
1026 669 0.08
1027 441 0.05
1028 429 0.05
1029 390 0.04
1030 624 0.07
1031 524 0.06
1032 458 0.05
1033 337 0.04
1034 493 0.06
1035 349 0.04
1036 467 0.05
1037 579 0.07
1038 368 0.04
1039 329 0.04
1040 319 0.04
1041 360 0.04
1042 357 0.04
1043 290 0.03
1044 393 0.05
1045 236 0.03
1046 191 0.02
1047 243 0.03
1048 407 0.05
1049 340 0.04
1050 307 0.04
1051 447 0.05
1052 812 0.09
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
TACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
GGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCAC
CATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG
AGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGACTAACAAGTTT
GGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGT
GAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCC
CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAAGCGAACCA
GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCC
CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
Found at i:16117948 original size:26 final size:26
Alignment explanation
Indices: 16117912--16117964 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16117902 GTTGACTTAG
*
16117912 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16117938 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16117964 G
1 G
16117965 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16118832 original size:26 final size:26
Alignment explanation
Indices: 16118802--16118854 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16118792 GTTGACTTAG
16118802 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16118828 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16118854 G
1 G
16118855 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16121652 original size:26 final size:26
Alignment explanation
Indices: 16121616--16121666 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
16121606 TTGACTTAAG
16121616 CATACGGAGTTCATTCCCAGTCTAAT
1 CATACGGAGTTCATTCCCAGTCTAAT
16121642 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
16121667 GATTGGATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAT
Found at i:16122550 original size:26 final size:26
Alignment explanation
Indices: 16122514--16122566 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16122504 GTTGACTTAG
*
16122514 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
16122540 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
16122566 G
1 G
16122567 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:16123444 original size:26 final size:26
Alignment explanation
Indices: 16123412--16123464 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16123402 TGGGTTGACA
*
16123412 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCACAGTC
16123438 TAGGCATACGGAGTTCATTCACAGTC
1 TAGGCATACGGAGTTCATTCACAGTC
16123464 T
1 T
16123465 TAGATCAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCACAGTC
Found at i:16123894 original size:905 final size:901
Alignment explanation
Indices: 16120560--16126455 Score: 7197
Period size: 904 Copynumber: 6.6 Consensus size: 901
16120550 CATGGGTTAA
* * * * *
16120560 CTTAGGCATACAGAGTGCATTCCCAGTCTAAGATCGGACCAAACTGAGGGTTACGGCAGCAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGAT
** * * * * * *
16120625 TAGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCTTCCCGCCCCTCCGGTCGTCTG
66 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
** * * *
16120690 AATGCCCGAATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATA
131 AGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * * *
16120755 TGGAGTTCATTCCCAGTCAAAGATCAGATCGGACCGAGGGTTGC-GACAGCACTTGCTGGGCTCG
196 CGGAGTTCATTCACAGTCTAAGATCAGACCAGACCGAGGGTTGCAG-CAGCACATGCTGGGCTCG
* * * * *
16120819 GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAG-AAC-C--TG-ACT-G
260 GGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCTCGGAGAACTGG
* * * *
16120878 --G-CATCATTGGGGTTCCGACGATC-AGGGGG-CTGGGGGGTGTGCACACATGATGTGCGATGG
325 CCGACAGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGG
*
16120938 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCAT-GAGAACTCACAACCC
390 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCC
* * *
16121002 CTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATAGGGA
454 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
16121067 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAT
519 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
16121132 GCCACCAAAAATACAAGGATCACGCCTACCAAGTTT-GGGCTCAAAA-TGCCTTCTGAAAAAAAT
584 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAAAACT-CCTTCCGAAAAAATT
* * ** * * *
16121195 TTAAAAAATCCCGAATCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCC
647 TTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
16121260 ATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAATTGGCTTTG
712 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** * * * *
16121325 GCACATAAAAATAGGAAGATGTGCC-AAACCCACCAACCACCCTATCGATCCACGGATTGCGCAT
777 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * * * * *
16121389 CCTGTCTCTCTAGCCGGCGTAGTGCCTGTCCGCCCGCCCGCCCGCTCGTTTTGTCCGTTGT
842 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CCGTCCGCCCGCTCGTTTCGTCGGTTGG
* * ** *** *
16121450 TTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGAATGGA-TGGAGGGTTGCGGTAGCAGGA
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAGCAGGA
* * * * ** *
16121514 TCAGCAGCATGCAGAAGGGGACCCCG-TCGATCCCCGGCTTGCGCATCGCGCCTTTCTGGCCTGC
65 TCGGCAGCACGCAGAGGGGGA-CCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
16121578 TGAGCGCCCCGCATGCTCGTTTTGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAATC
129 TGAGCG-CCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* ** * * * * *
16121643 ATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACTGAGGGTTGCGGCAGCTCATGTTGGGCT
193 ATACGGAGTTCATTCACAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCT
* *
16121708 CGGGCATGTGCTGGTG-T-CATATTTTTCTTCGTCAGGGCACCATCA-CTGGAGCATCACTGGAG
258 CGGGCATGTGCTGGTGCTGC--ATTTTTCTTCGTCGGGGCACCATCATC-GGAGCATCTC-GGAG
** * * * * * * *
16121770 AACCTTACCGGCGGCATTGGTGTCCCGACAATTGGGGGGGCCGAGGGGGGTGTGCGAACATGATG
319 AA-CTGGCCGACAGCATTGGGGTTCCGACGATCGGGGGGGCC-AGGGGGGTGTGCGCACATGATG
* *
16121835 TTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAACTC
382 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
16121900 ACACCCCC-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
447 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
16121964 ATGGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAACTTTTTAACTGAATTTTTT
512 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTT
* * * * *
16122029 T-TACATGCCAACAAAAATACAAGGATCATGTCTACAAAGTTTGGGGCCAAAAATCCTTCTGAAA
577 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** * * *
16122093 AAATTTAAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAAAAAAAGAGCCGTC
642 AAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
16122158 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
707 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
16122223 CATTGGCATGCAAAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGACTTG
772 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
16122288 TGCATCCCGTCTTTCTGGCCGACGTAGTGCCCGCCCG-C-T-TGCCCGCTTGTTTCGTCAGTTGG
837 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCGTCCGCCCGCTCGTTTCGTCGGTTGG
* * *
16122350 CTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGA-CAGGACTGAAGGTTGCGGTAGCAGGA
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACTGAGGGTTGCGGCAGCAGGA
* * * * * * *
16122414 TCGGCAGCACGTAGAGGGGGACCCAACCGATCCCCGACTTGCACATCCCACCCCTCTGGCAGGCT
65 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
16122479 GAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
130 GAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * *
16122544 ACGGAGTTCATTCACAGTCTAAGATCAGACTAGACCGAGGGTTG-TGATAGCACATGCTGGGCTC
195 ACGGAGTTCATTCACAGTCTAAGATCAGACCAGACCGAGGGTTGCAG-CAGCACATGCTGGGCTC
* * * * * * *
16122608 GGGCATGTGCTGGTTCCGTATTTTTCTTCGCCGGGGCACCATCGTCAGAGCATCACCGGAGAACC
259 GGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATC-TCGGAGAA-C
** * * * * * * * *
16122673 TGATCGGCGGCATTAGGGTTCCGATGATCGGCGTGGTCAGTGGGGTGTGCGCACATGATGTGCGA
322 TGGCCGACAGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGA
* * * * *
16122738 TAGGTGCTGGTAGTTGGCCCTTATATTGGCACCCTAT--CTC-TTAAACCTCAAGAACTCACACC
387 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
16122800 CCTTTAAACAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGG
452 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
16122865 GACACTTTTTCCAAATGGTCACAAAATCGTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGC
517 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGC
* * *
16122930 ATGCCAACAAAAATACAAGGATCACATATACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATT
582 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
*
16122995 TTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCC
647 TTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
16123060 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTG
712 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * **
16123125 GCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTATGCAT
777 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
16123190 CCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGTCCGTCCGCTCGCTCGTTTCGTCGGTTGG
842 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CCGTCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * *
16123251 CTTAGGAATACGGAGTTCATTCCTAGTCTAAGATCAGACCAAACTGAGGGTTGCGACATCAAGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGAT
* * * * * * * ** *
16123316 TGGCAGCACACAGAGGGGGGCTCGGTCGATCCTCGGCTTGTGCATATCGCCCCTCTGGCCGGTTG
66 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * * * *
16123381 GGCGCCGGCACGCCCGTTTCATGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAGGCATA
131 AGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * *
16123446 CGGAGTTCATTCACAGTCTTAGATCAAACCAGACCGAGGGTTGTAGCAGCACATGCTGGGCTCGG
196 CGGAGTTCATTCACAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGG
16123511 GCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAAGCTG
261 GCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATC-TCGGAGAA-CTG
* * *
16123576 GCCGACAGCATTGGCGTTCTGATGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGAT
324 GCCGACAGCATTGGGGTTCCGACGATCGGGGGGGCC-AGGGGGGTGTGCGCACATGATGTGCGAT
* *
16123641 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATTAAACCTCGAGAACTCACACCC
388 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * *
16123706 CCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTCTCTGAAATGGTG
453 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * * *
16123771 ACACTTTTTTTAAATTGTCACAAAATCGTGTACACTTCTACTTTTTAGCTGAATTTTTTTATGCA
518 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCA
* *
16123836 TGCCAACAAAAATACAATGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
583 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * * *
16123901 TAAAAAGTCCCAAACCGC-AAAAGTTTCAAAAGTCATGAAAAATAGAAAACGAGGCGTCTTGCCA
648 TAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
16123965 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGG
713 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
16124030 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATC
778 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
16124095 CCATCTCTCTGGCCGACGTAGTGCCTGCCCGCTCGTCTGCCCGCTCGTTTCGTCGATTGG
843 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC-CGTCCGCCCGCTCGTTTCGTCGGTTGG
* * ** * ** ** * * *
16124155 CTTAGGAATATGGAGTTCATTCCTTGTCTAAGATCGGACTGGACCAAAGGTTGTGGCAGTAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGAT
* * * * ** *
16124220 CGGCAGCACACAGAGGGGGACCCGACCGATCCTCGGCTTGTGCATATCGCGCCTCTGGCCGGCTG
66 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * * * *
16124285 GGCGTCGGCATGCTCGTTTCGTGGGTTAACATAGGCATACAGAGTTCATTCCCAGTCTAGGCATA
131 AGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * *
16124350 TGGAGTTCATTCACAGTCTAAGATCAGACCAGACCGAGGGTTACAGCAGCACATGCTAGGCTCGG
196 CGGAGTTCATTCACAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGG
*
16124415 GCATGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTG
261 GCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATC-TCGGAGAA-CTG
* * * * * ** *
16124480 ACAGGC-GACATTGGGGTTCTGGCGATCTAGGGGGCC-GGGGGGTGTGCGCAAATGATGTGCGAT
324 GCCGACAG-CATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGAT
* * * * *
16124543 GGGAGCCGATACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCACACCC
388 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
16124608 CTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGG
453 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
16124673 ACATTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCA
518 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCA
*
16124738 TTCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-T--GAAAAAATTT
583 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * *
16124800 GAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGCCTTGCCA
648 TAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
16124865 TGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
713 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
16124930 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGACTAGCGCATC
778 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
16124995 CCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CCGT--------TCGTTTCGTCAGTGGG
843 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCGTCCGCCCGCTCGTTTCGTCGGTTGG
* * * *
16125043 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAAGATCGGACCGAGGGTTGCGGCAGCAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGAT
** * * * * * **
16125108 CGATAGCATGTAAAGGGGGACCCGACCGATCCCCGGCTTACGCAT-CCGCCCCTCTGGTTGGCTG
66 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
16125172 AGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
131 AGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * * * * *
16125237 CGGAGTTCATTCATAGTCTATGATCTGATCAGACCAAGGGTTGC-GTAGCACATACTGGGCTCGA
196 CGGAGTTCATTCACAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGG
* * *
16125301 GCATGTGCAGGTGTTGCATTTTTCTTTGTCGGGGCACCATCATCGGAG-----C----AA-T-GC
261 GCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCTCGGAGAACTGGC
* ** * * * * *
16125355 CAGATAGCATTAAGGTTTCGGCGATCGGGGGGGCCGGGGGGGGGGGTGTACACACATGATGTGCG
326 C-GACAGCATTGGGGTTCCGACGATCGGGGGGGCC----AGGGGGGTGTGCGCACATGATGTGCG
* * * *
16125420 AAGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCATAC
386 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* ** *
16125485 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTATCAGTAGCCATTAAAGTGTCTGAAATAG
451 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
16125550 GGACACTTTTTTCAACTGGTCACAAAATCTTGT-CAACTTCGAGTTTTTAGCTGAATTTTTTTGT
516 GGACACTTTTTTCAAATGGTCACAAAATCTTGTAC-ACTTCGACTTTTTAGCTGAATTTTTTTGT
* * * *
16125614 CCATCCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGACCAAAACTCCTTCCGAAAAAA
580 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * ** * *
16125679 TTTTAAAAAATCCTAAACCACAAAACGTTTTGAAAATCCTTGAAAAATAGAAGACGAGTCGTCTT
645 TTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAAT-CGTGAAAAATAGAAAACGAGTCGTCTT
*
16125744 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCA
709 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
16125809 TTGGCACGCAGAAATATGAAGATGTGCGTAAACCCACCTACCACCCTATCGATCCACGGCTTGCA
774 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * *
16125874 AATCCCGTCTCTCTAGTCAGGCGTAGTACCCGCCCG-C--CCGTCCGCTCGTTTCATCGGTTGG
839 CATCCCGTCTCTCT-GGCCGACGTAGTGCCCGCCCGCCGTCCGCCCGCTCGTTTCGTCGGTTGG
* * * *
16125935 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGTGGCAGCAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGAT
* * * * *
16126000 TGACAGCACGCAGAGGGGGACCCGATCGATCCCCAGTTTACGCATCCCGCCCCTCTGGCCGGCTG
66 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* **
16126065 AGCGCCCGCTTGCTCGTTTCACGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-
131 AGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * *
16126128 C-G-G---------A--CT-AGAT-----C--A---AGGGTTACGGTAGCACATGCTAGGCTCGG
196 CGGAGTTCATTCACAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGG
* * * * * * *
16126169 GCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGTACCATCACCGGAG-AACT---TG-ACCGG-
261 GCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCTCGGAGAACTGGC
* *
16126228 C-A-A-CATTGGGGTTCCGACGATCGAGGGGGCC-GGGGGTTGTGCGCACATGATGTGCGATGGG
326 CGACAGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
16126289 TGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCT
391 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * *
16126354 TAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAACCGTGAAAGTGTCTGAAATGGGGACA
456 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
16126419 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
521 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
16126456 GTTTGGGGCC
Statistics
Matches: 4369, Mismatches: 554, Indels: 192
0.85 0.11 0.04
Matches are distributed among these distances:
864 177 0.04
865 1 0.00
867 7 0.00
868 58 0.01
869 23 0.01
870 2 0.00
871 1 0.00
872 2 0.00
873 2 0.00
874 25 0.01
875 1 0.00
876 2 0.00
877 3 0.00
878 3 0.00
879 247 0.06
880 3 0.00
882 39 0.01
883 158 0.04
884 14 0.00
886 62 0.01
887 107 0.02
888 102 0.02
889 2 0.00
890 106 0.02
891 154 0.04
892 114 0.03
893 75 0.02
895 22 0.01
896 121 0.03
897 272 0.06
898 61 0.01
899 214 0.05
900 313 0.07
901 322 0.07
902 329 0.08
903 197 0.05
904 720 0.16
905 308 0.07
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (901 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGAT
CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
AGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
CGGAGTTCATTCACAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGG
GCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCTCGGAGAACTGGC
CGACAGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
AAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGACGTAGTGCCCGCCCGCCGTCCGCCCGCTCGTTTCGTCGGTTGG
Found at i:16124346 original size:26 final size:26
Alignment explanation
Indices: 16124316--16124369 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
16124306 TGGGTTAACA
*
16124316 TAGGCATACAGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCACAGTC
**
16124342 TAGGCATATGGAGTTCATTCACAGTC
1 TAGGCATACAGAGTTCATTCACAGTC
16124368 TA
1 TA
16124370 AGATCAGACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCACAGTC
Found at i:16125254 original size:26 final size:26
Alignment explanation
Indices: 16125206--16125256 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16125196 GTTGACTTAG
*
16125206 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
16125232 GCATACGGAGTTCATTCATAGTCTA
1 GCATACGGAGTTCATTCACAGTCTA
16125257 TGATCTGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:16128533 original size:26 final size:26
Alignment explanation
Indices: 16128497--16128547 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16128487 GTTAACTTAG
*
16128497 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16128523 GCATACGGAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATTCCCAATCTA
16128548 GGATCAGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16129369 original size:908 final size:905
Alignment explanation
Indices: 16127628--16131320 Score: 5123
Period size: 908 Copynumber: 4.1 Consensus size: 905
16127618 GTTGAATTAG
* * ** *
16127628 GCATACGGAGTTCATTCCCAGTCTAAGAT-TGCATC-AGACTGAGGGTTG-CAGCAGCACATGCT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAG-ATCGA-ACCAAGGGTTGTGA-CAGCACATGCT
** * * *
16127690 GGGCTCGGGCATGTACTGGTGCCGTATTTTTCTTCGT-TGGGGCACCATCGTTGGAGCATCACCG
63 GGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCT-GGGCACCATCGCTGGAGCATCATCG
* * * *
16127754 TAGAACCTGACCGGCGGCAATGGGGTTCCGACGATCAAGAGGGCC---GGG-G-G-G-------T
127 AAGAACCTGACCGGCGACAATGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATTAT
** * *
16127806 GTGCGATGGGTGCCAGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACG
* ** * *
16127871 CACATGCCCTTATAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGA
256 AACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
16127936 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
16128001 TTGTCCATGCCAACAAAAATACAAGGATGACATCTAAAAGGTTTGGGGCCAAAACCCCTTCTGAA
386 TTGTCCATGCCAACAAAAATACAAGGATCACATCTAAAAAGTTTGGGGCCAAAACCCCTTCCGAA
*
16128066 AAAATTTTACAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
451 AAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
16128131 CTTGTCATGAAACTTCACGTGAAAGGCTTAAGGGACCATTGTATGAATTTCCAAGCCATAAAAAT
516 CTTGCCATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
16128196 GGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACGACCCTATCGATCCACGGCG
580 GGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCG
*
16128261 TGCACATCCCGTCTCTTTGGCAGGCGTAGTGCCCGCCCACCCGCCCTCTCGTCCGTTCATTTCGT
645 TGCACATCCCGTCTCTCTGGCAGGCGTAGTGCCCGCCCACCCG-CCTCTCGTCCGTTCATTTCGT
*
16128326 CGGTTGGCGTAGGCATACGGAGTTCATTTCTAGTCTAAGATCAGACCAGACCGAGAGTTGCGGTA
709 CGGTTGGCGTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGAGTTGCGGTA
* * ** * **
16128391 GCAGGATCAGCATCATACAGAGGGGGACCCGATTGATCCTCGGCTTACTTACC-CTGCCCCTCTG
774 GCAGGATCAGCAGCACACAGAGGGGGACCCGACCGATCCTCGGCTTGCGCACCTC-GCCCCTCTG
* * *
16128455 GCTGGCTGAGCACCAGCACGCTCATTTTGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTC
838 GCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTC
16128520 TAA
903 TAA
* * * * * *
16128523 GCATACGGAGTTCATTCCCAATCTAGGATCAGATTGGACCAAGGGTTGTGACAGCACATGCTTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGAACCAAGGGTTGTGACAGCACATGCTGGG
*
16128588 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCTGGGCACCATCGCTGGAGCATCGTCGAAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCTGGGCACCATCGCTGGAGCATCATCGAAGA
*
16128653 ACCTGACCGGTGACAATGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATTATGTGC
131 ACCTGACCGGCGACAATGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATTATGTGC
16128718 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACGAACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACGAACA
16128783 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
16128848 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
16128913 CCATGCCAACAAAAATACAAGGATGACGTCTAAAAAGTTTGGGGCCAAAACCCCTTCTGAAAAAA
390 CCATGCCAACAAAAATACAAGGATCACATCTAAAAAGTTTGGGGCCAAAACCCCTTCCGAAAAAA
*
16128978 TTTTACAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
16129043 TCATGAAACTTCACGTGAAAGGCTTAAGGGACCATTGTATGAATTTCCAAGCCATAAAAATGGCA
520 CCATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
16129108 TTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACGACCCTATCGATCCACGGCGTGCA
584 TTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCGTGCA
*
16129173 CATCCCGTCTCTTTGGCAGGCGTAGTGCCCGCCCACCCGCCCTCTCGTCCGTTCATTTCGTCGGT
649 CATCCCGTCTCTCTGGCAGGCGTAGTGCCCGCCCACCCG-CCTCTCGTCCGTTCATTTCGTCGGT
* *
16129238 TGGCGTAGGCATACGGAGTTCATTTCTAGTCTAAGATCAGACCAGACCGAGAGTTGCGATAGCAG
713 TGGCGTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGAGTTGCGGTAGCAG
* * **
16129303 GATCAGCAACATACAGAGGGGGACCCGATTGATCCTCGGCTTGCGCACCTCGCCCCTCTGGCTGG
778 GATCAGCAGCACACAGAGGGGGACCCGACCGATCCTCGGCTTGCGCACCTCGCCCCTCTGGCTGG
*
16129368 CTGAGCACCCGCACGCTCGTTTTGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 CTGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
16129431 GCGTACGGAGTTCATTCCCAGTCTAGGATCAGATTGGACCAAGGGTTGTGATAGCACATGCTTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGAACCAAGGGTTGTGACAGCACATGCTGGG
* *
16129496 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCTGGCCACCATCGCTGGAGCATCGTCGAAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCTGGGCACCATCGCTGGAGCATCATCGAAGA
*
16129561 ACCTGACCGGTGACAATGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATTATGTGC
131 ACCTGACCGGCGACAATGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATTATGTGC
16129626 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACGAACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACGAACA
16129691 CCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 -CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
16129756 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTT
* * ** * * ** *
16129821 TTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTAGGCCCAAAAATCATTCCGAAAA
388 GTCCATGCCAACAAAAATACAAGGATCACATCTAAAAAGTTTGGGGCCAAAACCCCTTCCGAAAA
* * *
16129886 AATTTTAAAAAATCCCGAACCGCT-AAAAGTTTTGAAAATCGTGAAGAATAAAAAACGAGTCGTC
453 AATTTTAAAAAATCCCAAACCG-TAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
16129950 TTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * *
16130015 CATTGGCACGTAGAAATATGAAGATGTGCCGAAACCCACCTACCACCCTATCAATCCACGGCTTG
582 CATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCGTG
* * ** * * *
16130080 CACATCCCGTCTCTCTGACGGGCGTAGTGCCCGCCCGTCCG-C-CT-GCCCGCTCGTTTCGTCGG
647 CACATCCCGTCTCTCTGGCAGGCGTAGTGCCCGCCCACCCGCCTCTCGTCCGTTCATTTCGTCGG
* * *** * *
16130142 TTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATTGGACCGAGGGTTGCGGTAGTA
712 TTGGCGTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGAGTTGCGGTAGCA
* ** * * * * * * *
16130207 GGATCGGCAGCACGTAGAGGGGGACCTGACCGATCCCCGACTTGTGCATCTCGCCCCTCTGCCCG
777 GGATCAGCAGCACACAGAGGGGGACCCGACCGATCCTCGGCTTGCGCACCTCGCCCCTCTGGCTG
* * * *
16130272 ACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAATCTAA
842 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
16130336 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGAATCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGAACCAAGGGTTGTGACAGCACATGCTGGG
* * * * * ** *
16130401 CTCGAGCATGTGTTGGTGCCACATTTTTCTTTGACGGGGCACCATCGCCAGAGCATCATCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCTGGGCACCATCGCTGGAGCATCATCGAAGA
* * * * * *
16130466 ACCTGATCGACGGCATTGGGGTTCCGACGATCCGGGTGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGACAATGGGGTTCCGACGAT-CGGGGGGCCGGGGGGTGTGCGCACATTATGTGC
* * **
16130531 GATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACGAACA
* * *
16130596 TCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAATAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * *
16130661 GGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTTGAATTTTTGGCTGAATTTTTTTAT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * **** * * * *
16130726 GCATACCAAAAAAAATACAAGGATCACATCTACCTTGTTTGGGGCAAAAACTCTTTCCAAAAAAA
390 CCATGCCAACAAAAATACAAGGATCACATCTAAAAAGTTTGGGGCCAAAACCCCTTCCGAAAAAA
* ** * *
16130791 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAACGTGAAAAATAGAAAACTAGTCGTCTTG
455 TTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
** *
16130856 CCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATTTATTTACAGGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
16130920 TGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGGATCCACGGCTTGCAC
585 TGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCGTGCAC
* * * * *
16130985 ATCCCGTCTCTCTGTCCGGTGTAGTGCCTGCCCGCCCGCCTGCTCGT---TTCA-----TCGGTT
650 ATCCCGTCTCTCTGGCAGGCGTAGTGCCCGCCCACCCGCCT-CTCGTCCGTTCATTTCGTCGGTT
* * * * * ** * * * *
16131042 GGGCTTAGGGATACAGAGTTCATTCCCAGCCTAAGATTGGACCGGACCAAGGGTTGCGGCAGCAG
714 -GGCGTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGAGTTGCGGTAGCAG
** * * *
16131107 GATTGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGTATCCT-GCCCTTCTGG-TC
778 GATCAGCAGCACACAGAGGGGGACCCGACCGATCCTCGGCTTGCGCA-CCTCGCCCCTCTGGCT-
* *
16131170 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGTG-ATACGGAGTTCATTCCCAGTTTA
841 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAG-GCATACGGAGTTCATTCCCAGTCTA
16131234 A
905 A
* * * * *
16131235 GCATATAGAATTCATTCCCAGTCTAAGATCGGAATCGAACCGAGGGTTGCGACAGCACATGCTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAG-ATCGAACCAAGGGTTGTGACAGCACATGCTGG
16131300 GCTCGGGCATGTGTTGGTGCC
65 GCTCGGGCATGTGTTGGTGCC
16131321 AAAACTCCTT
Statistics
Matches: 2553, Mismatches: 212, Indels: 61
0.90 0.08 0.02
Matches are distributed among these distances:
894 6 0.00
895 137 0.05
896 3 0.00
898 9 0.00
899 189 0.07
900 53 0.02
901 1 0.00
902 128 0.05
903 148 0.06
904 114 0.04
905 403 0.16
906 11 0.00
907 1 0.00
908 954 0.37
909 259 0.10
910 136 0.05
911 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (905 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGAACCAAGGGTTGTGACAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCTGGGCACCATCGCTGGAGCATCATCGAAGA
ACCTGACCGGCGACAATGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATTATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACGAACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTC
CATGCCAACAAAAATACAAGGATCACATCTAAAAAGTTTGGGGCCAAAACCCCTTCCGAAAAAAT
TTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCGTGCACA
TCCCGTCTCTCTGGCAGGCGTAGTGCCCGCCCACCCGCCTCTCGTCCGTTCATTTCGTCGGTTGG
CGTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGAGTTGCGGTAGCAGGAT
CAGCAGCACACAGAGGGGGACCCGACCGATCCTCGGCTTGCGCACCTCGCCCCTCTGGCTGGCTG
AGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16130346 original size:26 final size:26
Alignment explanation
Indices: 16130307--16130362 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
16130297 TGGGTTGACT
*
16130307 TAAGCATACGGAGTTCATTCCCAATC
1 TAAGCATACAGAGTTCATTCCCAATC
*
16130333 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAATC
16130359 TAAG
1 TAAG
16130363 ATCAGATCGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAATC
Found at i:16131781 original size:25 final size:26
Alignment explanation
Indices: 16131752--16131806 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 26
16131742 TGGGTTGACT
16131752 TAAGCATACGGAGTTCATT-CCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
*
16131777 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
16131803 TAAG
1 TAAG
16131807 ATCGGACTGG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 18 0.64
26 10 0.36
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:16132602 original size:26 final size:26
Alignment explanation
Indices: 16132573--16132625 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16132563 TTTAACTTAG
* *
16132573 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
16132599 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
16132625 G
1 G
16132626 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:16134288 original size:874 final size:873
Alignment explanation
Indices: 16132934--16134612 Score: 2366
Period size: 874 Copynumber: 1.9 Consensus size: 873
16132924 TTTTCGAATG
* ** *
16132934 GTCACAAAATCTTGTACACTTCGAGTTGTTAACTGAATTTTTTTGTACATGTGAACAGAAATACA
1 GTCACAAAATCTTGTACACTTCGAGTTGTTAACTGAATTTTTTTATACATGACAACAAAAATACA
* * * *
16132999 AGGATCACATCTTCCATGTTTGGGGCCAAAACTCCTTCCAAAAATATTTTAAAAAATCCCGAACT
66 AGGATCACATCTACCAGGTTTGGGGCCAAAACTCCTTCCAAAAATATTTTAAAAAATCCAGAACC
* * *
16133064 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAA
131 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTAGTCTTGCCATAAAACTTCACGTGAA
* * *
16133129 GGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTAAGAAATATGAA
196 GGCGTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTAAGAAATATGAA
*
16133194 GATGTGCCTAAACCCACCTACCACCCTATCGATCCATGCCATACGCATCCCGTCTCTCTGGTCGG
261 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCCATACGCATCCCGTCTCTCTGGTCGG
** * *
16133259 CGTAGTGCCCGCCAGCCCACCTGCCCGCTCATTTTGTCGGTTGGCTTAGGCATACAGAATTCATT
326 CGTAGTGCCCGCCAGCCCACCCACCCACTCATTTTGTCAGTTGGCTTAGGCATACAGAATTCATT
* *
16133324 CCCAGTCTAAGATCAGACTGGACTGAGGGTTGCCATAGCAGGATCGACAACACGCAGAGGGGGAC
391 CCCAGTCTAAGATCAGACTGGACTGAGGGCTGCCACAGCAGGATCGACAACACGCAGAGGGGGAC
** * ** *** * *
16133389 CCGGCCGATCCCTGGCCTGCGCATCCTGCCCTTCTGGTCGGTTGAACGCCCGCATGCTCGTTTCA
456 CCAACCGATCCCTGGCCTACGCATCCCACCCTTCTCACCCGTTGAACGCCCGCACGCTCGTTTCA
* *
16133454 TCGTTTGACTTAGGCAAACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
521 TCGGTTGACTTAGGCAAACAGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
16133519 GATCAGGCCAGATCGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTT
586 GATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * *
16133584 TTCTTCGTCGGGGCACCATCACAGGAGCATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCCG
651 TTCTTCGTCGGGGCACCATCACAGAAGCATCACCGAAGAACCTGACCGACGGCATTAGGGTTCCG
* **
16133649 GCGATCGGAGGGGCCGAGGGGGTGTGCGTACATGATGTGCGATAGGTGCTGGTACTTGGGC-CTT
716 ACGATCGG-GGGGCCG-GGGGGTGTGCACACATGATGTGCGATAGGTGCTGGTACTT-GGCTCTT
* *
16133713 ATATTGGCTCTCTATCCTTCATCAAACCTCGAGAACTCAAAGCCCCTTAAAGCGCATTTGAGATT
778 ATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCAAAGCCCCTTAAAGCGCATTTGAGATT
16133778 TTACAGGTTTGCTGTCAGTAGCCATTAAAGT
843 TTACAGGTTTGCTGTCAGTAGCCATTAAAGT
* * * * * *
16133809 GTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCGTGACAACAAAAATGC-
1 GTCACAAAATCTTGTACACTTCGAGTTGTTAACTGAATTTTTTTATACATGACAACAAAAATACA
* *
16133873 AGCGATCACGTCTACCAGGTTTGGTGCCAAAACTCCTTCCGAAAAA-ATTTT-AAAAATCCAGAA
66 AG-GATCACATCTACCAGGTTTGGGGCCAAAACTCCTTCC-AAAAATATTTTAAAAAATCCAGAA
* * *
16133936 CCG-ACCAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTAGTCTTGCCATAAAAGTTCACGT
129 CCGTA-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTAGTCTTGCCATAAAACTTCACGT
*
16134000 GAAGGCGTAAGGGAACATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCAC-ATAGAAATA
193 GAAGGCGTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTA-AGAAATA
* * ** * *
16134064 TGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCACGGCTTGTGCCTCCTGTCTCTCTGG
257 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCCATACGCATCCCGTCTCTCTGG
* * *
16134128 TCGGCGTAGTGCCCGCCCGCCCACCCACCCACTCATTTTGTCAGTTGGCTTAGGCATACGGAGTT
322 TCGGCGTAGTGCCCGCCAGCCCACCCACCCACTCATTTTGTCAGTTGGCTTAGGCATACAGAATT
* * * * * * *
16134193 CATTCCCAGTCTAAGATCGGAACTGGATTGAGGGCTG-CAGCAGTAGGATTGGCAGCATGCAGAG
387 CATTCCCAGTCTAAGATCAG-ACTGGACTGAGGGCTGCCA-CAGCAGGATCGACAACACGCAGAG
* * * * *
16134257 GGGGACCCAACCGATCCCTGGCTTACGCATCCCACCCTTCTCACCCTTTGAGCGCCCGCACGTTG
450 GGGGACCCAACCGATCCCTGGCCTACGCATCCCACCCTTCTCACCCGTTGAACGCCCGCACGCTC
* * * * * * *
16134322 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTGCCAATCTAAGCATGCGGAGTTCATTCCTA
515 GTTTCATCGGTTGACTTAGGCAAACAGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCA
*
16134387 GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCC
580 GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * *
16134452 GCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCACCGGAGAACCTGACCGACGGCATTAGG
645 GCATTTTTCTTCGTCGGGGCACCATCACAGAAGCATCACCGAAGAACCTGACCGACGGCATTAGG
* * * *
16134517 GTTTCGATGATCGGGGGGGCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCT
710 GTTCCGACGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATAGGTGCTGGTACTTGGCT
*
16134582 TTTATATTGGCTCCCTATCCCTCATCAAACC
775 CTTATATTGGCTCCCTATCCCTCATCAAACC
16134613 CTTGGTCTGG
Statistics
Matches: 702, Mismatches: 95, Indels: 17
0.86 0.12 0.02
Matches are distributed among these distances:
871 3 0.00
872 65 0.09
873 117 0.17
874 420 0.60
875 92 0.13
876 5 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (873 bp):
GTCACAAAATCTTGTACACTTCGAGTTGTTAACTGAATTTTTTTATACATGACAACAAAAATACA
AGGATCACATCTACCAGGTTTGGGGCCAAAACTCCTTCCAAAAATATTTTAAAAAATCCAGAACC
GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTAGTCTTGCCATAAAACTTCACGTGAA
GGCGTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTAAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCCATACGCATCCCGTCTCTCTGGTCGG
CGTAGTGCCCGCCAGCCCACCCACCCACTCATTTTGTCAGTTGGCTTAGGCATACAGAATTCATT
CCCAGTCTAAGATCAGACTGGACTGAGGGCTGCCACAGCAGGATCGACAACACGCAGAGGGGGAC
CCAACCGATCCCTGGCCTACGCATCCCACCCTTCTCACCCGTTGAACGCCCGCACGCTCGTTTCA
TCGGTTGACTTAGGCAAACAGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
TTCTTCGTCGGGGCACCATCACAGAAGCATCACCGAAGAACCTGACCGACGGCATTAGGGTTCCG
ACGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATAGGTGCTGGTACTTGGCTCTTATA
TTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCAAAGCCCCTTAAAGCGCATTTGAGATTTTA
CAGGTTTGCTGTCAGTAGCCATTAAAGT
Found at i:16135386 original size:26 final size:26
Alignment explanation
Indices: 16135350--16135402 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16135340 CTGGTCCGAT
*
16135350 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16135376 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16135402 C
1 C
16135403 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16136290 original size:26 final size:26
Alignment explanation
Indices: 16136250--16136302 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16136240 CCGGTCCGAT
*
16136250 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
16136276 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
16136302 C
1 C
16136303 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:16137166 original size:26 final size:26
Alignment explanation
Indices: 16137128--16137180 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16137118 TCAGTCTGAT
16137128 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
16137154 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16137180 C
1 C
16137181 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16139822 original size:26 final size:26
Alignment explanation
Indices: 16139780--16139832 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16139770 CGGGTTCGAT
*
16139780 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGCAATGAAATCCGTATG
* *
16139806 CTTAGACTGGCAGTGAACTCCGTATG
1 CTTAGACTGGCAATGAAATCCGTATG
16139832 C
1 C
16139833 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAAATCCGTATG
Found at i:16140021 original size:4 final size:4
Alignment explanation
Indices: 16140012--16140037 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
16140002 GACGAAACGA
16140012 GCGG GCGG GCGG GCGG GCGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GC
16140038 ACTACGTCGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.27, G:0.73, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:16142117 original size:875 final size:878
Alignment explanation
Indices: 16134625--16142326 Score: 9025
Period size: 875 Copynumber: 8.7 Consensus size: 878
16134615 TGGTCTGGTA
* * * *
16134625 TGATCTTAGACTGGGAATGAACTTCGTACGCCTAAGCAAATCGACGAAACGAGCGGGCGGGCAGG
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA------GGG-A--
* *
16134690 TGGGCGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
57 CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
16134755 AGGTAGGTTTAGGCACATCTTCATATTTCTACGTGCTAATGCCATTTTTATGGCTTGTAAATTCA
122 AGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
16134820 TACAATGGTCCTTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAC
187 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * *
16134885 GATTTTTAAAACTTTTTGCGGTT-GGGATTTGTTAAAA-TTTTTCAGAAGGAGTTTTGGCCCCAA
252 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
*
16134948 ACTTGGTAGATGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
317 ACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
16135013 TGTACAACATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGC
382 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * *
16135078 AGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGCAT
447 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGAT
* *
16135143 AGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATCGCACATCATGTGCGCAGACCCCACCCCG
512 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC--ACACC-CCCCG
* * ** * * * * * *
16135208 GCCCCCCCAACCACCGAAACCCCAATGCCGTCGATCAGGTTTTCTGACGATGCTCCGACGATGGT
574 GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGT
* * * * * *
16135273 GCGCCTGCGAA-AAAAATACGGCACCAGCACATGCTCGATCCCAGCATGTGCTGCTGCAACCCTC
639 GC-CCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT-
*
16135337 AATCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGTATGAACTCCGTATG
702 --TC--G--CG---TT--ACTGGG-AT---C--CGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
16135402 CCTAAGTCAACACATGAAACGAGCGTGCGGGTGCTAAGCCGACCATAGGGGCGGGATGCGTAAGC
750 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
*** * ** * * * *
16135467 CGAGGATCGGTCGGGTCCCCCTCTGCATGCTGTTGATCCTATTGTCGCAACCCTCGGTCCAGTC
815 CGAGGATCGGTCGGGTCCCCCTCTATGTGCTGCTGATCCTGCTGCCACAACCCTCAGTCCGGTC
* * *
16135531 TGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGTGGGCAGGCAGG
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--GGG-A--CGGG
*** * * * *
16135596 CGGGCGGGTTTTACATCGGCCAGAGAGACGAGATGCACAAGTCGTGGATCGATAGGGTGGTAGGT
61 CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
** * *
16135661 GGGTTTAGGCACATCTTCATATTTCTGTGTACCAATGCCATTTTTATGGCTGGTAAATTCATACA
126 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
16135726 ATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTCGTTTTCAATTTTTCTCGATT
191 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * *
16135791 TTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATATTTTT-GGAAGGATTTTTGACCCCAAACT
256 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT-TTTTTCGGAAGGAGTTTTGGCCCCAAACT
16135855 T-GTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
320 TGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
16135919 ACAAGATTTTGTGACCATTAGGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACAGGCAGC
385 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
16135984 AAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA-AGGTTTGATGAGGGATAG
450 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-AGAGGTTTGATGAGGGATAG
* ** *
16136048 GGGGCCAATATAGGGGCCAAGTAATAGCACCCACCGCACATCATGTGCGCACACCCCCCGG-CCC
514 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* * ** * *
16136112 CCCGATCGTCGGAACCCCAATGCCACAGGTCAGGTTCTTTGGTGATGCTCCGGCGATGGTGCCCC
579 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTG-CCC
* * * * * *
16136177 GACGAAGAAAAATGTGGCACCAACACATGCTCGACCCCAGCATGAGCTGCCACAACCCTCGGTCC
643 GGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT---T-C
*
16136242 GGTCCGATCTTAGACTGGAAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
704 -G--CG---TT--ACTGG----G-A-TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * ** *
16136307 GTCAACACACGAAACGAGCGTGCGGGTGCTTAGCCGACCAGAGAGGCGGGATGCGTGAGCCGGGG
755 GTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGG
* * * * *
16136372 ATCGGTCGGGT-CCCCTCTTTGTGCTG-TCGATCATGATGCCACAACCCTCTGTCCAGTC
820 ATCGGTCGGGTCCCCCTCTATGTGCTGCT-GATCCTGCTGCCACAACCCTCAGTCCGGTC
** * * *
16136430 CAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGA--G-CGGGTGGGC
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGACGGGCGGGC
* * * ** *
16136492 GGG-----CG--GG-C-GAG-CAC--TATG-TC--G--GTCGGAAAGAT-GGGTGGTAGGTAGGT
66 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT-GGATCGATAGGGTGGTAGGTGGGT
* * *
16136539 TTAGGCACATCTTCATATTTCTGA-ATGCCAACGCCATTTTTATTGCTTGTAAATTCATACAATG
130 TTAGGCACATCTTCATATTTCT-ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
16136603 GTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCCTTTTCTATTTTTCATGATTTTT
194 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * *** * * *
16136668 GAAACCTTTTGCGGTTTAAGATTTTTTAAAATTTTTTCGAAAGGGGTTTTGGGCCCAAACTTGGT
259 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
*
16136733 AGACGTGATCCTTGTATTGTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
324 AGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
16136798 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
16136863 CTGTAAAATCTCAAATGATCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
454 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGC
* **
16136928 CAATATAAGGGCCAAGTACCAGCATCCATCGCACATCATGTGCGCACACCCCCACCCCAGCCCCC
519 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGC--CCCCC
* * * *
16136993 CGATGGTCGGAACCCCATTGCCGCCGATCAGGTTCTCCGATGATGCTCCGACGATGGTGCCTCGA
581 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCC-CGG
*
16137058 CGAAGAAAAATGCGGCACCAACACATGCCTGAGCCCAGCATGTGCTG-CGCAACCCTCGATTCAG
645 CGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--TTC-G
16137122 TCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
705 -C-G---TT--ACT-GG---G-A-TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * ** *
16137187 CAACCTACGAAACGAACGTGCGGGTGCTTAGCCGGCCAGAGGGGCGGGATGCATAAGTCGAGGAT
757 CAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGAT
** * * * ** * *
16137252 TAGCCGGGTCCCCCTCTATATGCTGCCGAT-CTGCTGCCGTAACCCTCGGTCCGATC
822 CGGTCGGGTCCCCCTCTATGTGCTGCTGATCCTGCTGCCACAACCCTCAGTCCGGTC
* * * * *
16137308 CGATCTTAG-GTGGGGAATGAACTCTGAATGCCTAAGCCAACCAACGAAACGA--G-CGGGCGGG
1 TGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGACGGGCGGG
* * *
16137369 CGGGCACTACGCCGACCAGAGAGACGTGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
65 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
16137434 TTAGGCACATCTTCATATTTCTATGTGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
16137499 TCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGATGACTCGTTTTCTATTTTTCACGACTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* ** * * *
16137564 AAACTTTTTACAGTTCAAGATTTTTTGAAGTTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTA
260 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
16137629 GACGTGATCCTTGTATTTTTTTGGCATGCACAAAACAATTTAGCTAAAAACTTGAAGTGTACAAG
325 GACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
16137694 ATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAGCAAACC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * *
16137759 TGTAAAATCTCAAATGCTTTTTAATGGGGTGTGAGTTCTCGAGGTTTGATGAGGGACAGGGGGCC
455 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCC
*
16137824 AATATAAGGGCCAAGTACCAGCA-CCATCGCACATCATGTGCGCACACCCCCCGGCCACCCCGAT
520 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
* * * * *
16137888 CGTCGGAACCCCAAAGCCGTCGGTCAGGTTCTCC---G--G----G--GATAGTGCCCCAGCAAA
585 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTG-CCCGGCGAA
* * * ** * *
16137942 GAAAAATGTGACACCAACACATGCCCGAGCCCAGCAGGTGCTGTTGTAACCCTCGATCCAATTCG
649 GAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT---T-C---GCG
* *
16138007 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
707 ---TT--ACT-GG---G-A-TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * *
16138072 CCACGAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGGGGTGGGATGCACAAGCCTAGGATCGGT
761 CCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGT
* * ** *
16138137 CGGGTCCCCCTCTACGTGCTACTGATCCTGCTGCTGCAACCCTC-GATCCGGAC
826 CGGGTCCCCCTCTATGTGCTGCTGATCCTGCTGCCACAACCCTCAG-TCCGGTC
* * * * * *
16138190 TGAACTTAGACTGGGAATAAACTACGTATGCCTAAGCCAACAGAC--AA--A---ACGAGCGGGT
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGACGGGCGGGC
* ** * *
16138248 GGGCACTACGCCGGTTAGAGAGACGGGATGCACAAGTCGTGGATCGATAGGGTGGTAGGTGGGTT
66 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
16138313 TAGGTACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * * * **
16138378 CCCTTAGGCCTTCACATGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTGCATGATTTTCAA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * *
16138443 AAATTTTTGCCGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAG
261 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
16138508 ATGTGATCCTTGTACTTTTGTTGGCATGCAC-AAAACATTCGGCTAAAAACTCGAAGTGTACAAG
326 ACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
16138572 ATTTTGTGACCATTTGAAAAACGTGTCCCCATTTTCAGACACTTTAATGGCTACTGGCAGCAAAC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAAC
16138637 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA-AGGTTTGATGAGGGATAGGGGG
454 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-AGAGGTTTGATGAGGGATAGGGGG
*
16138701 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACTCCCCTCGGCCCCCA
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCC-CGGCCCCCC
** * * * * * * *
16138766 CGATCGTCGGAACCCCAATGCCTTCGATCAGATTTTTCGACGATGCTTCGGCGATGGTGCCCTGG
581 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCC-GG
** * *
16138831 C-AAGAAAAATGCGGCACCAACACATGCTTGAGCCCATCATGTGCTGCCGTAACCC-TCG-GTT-
645 CGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTCGCGTTA
* * * * *
16138892 C---GTTCTG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGGGCG
710 CTGGGATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
** * ** * *
16138952 TATGGGTGCTCAGCCGGCCAAAGGGGCAAGATGCGTAAGCC-AGGGATCGATCGGGTCCCCCTCT
775 TGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGGTCGGGTCCCCCTCT
* * *
16139016 A-GTGCTG-TCGATCCTGCTGCCGCAACCCTCAATCTGGTC
839 ATGTGCTGCT-GATCCTGCTGCCACAACCCTCAGTCCGGTC
* * *
16139055 TGATTTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGACCGGGCAGA
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGA-CGGGC---
* * * *
16139120 AGGGCGGGCACTACATCAGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTAGTAGGT
62 -GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
16139185 GGGTTTAGGCACATATTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
126 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * * * *
16139250 ATTGTCCCTTAATCCTTCACGTGAAGGTCCATGGCAAGACGACTCATTTTTTCTATTTTTCATGA
191 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC--GTTTTCTATTTTTCACGA
* **
16139315 TTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC-GAAGCGAGTTTTGGCAACAAA
254 TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG-GAGTTTTGGCCCCAAA
* * *
16139379 ATTGGTAGATGTGACCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAA
318 CTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-AA
* * *
16139444 ATGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTCAATGGCTACTGG
381 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * * *
16139509 CAGCAAACCTGTAAAATCTCAAATACTCTTTAAAGGGGTGTAAGTTCTCGAGGTTTGATGAGGGA
446 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGA
* *
16139574 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCTGGC
511 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * * **
16139639 CTCCCCGATCG-CTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCTGGTGATGGTG
576 CCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTG
** *
16139703 CCCCGATGAAGAAAAATGCGACACCAACACATG-CCGAAGCCCAGCATGTGCTGCCGCAACCCTC
640 -CCCGGCGAAGAAAAATGCGGCACCAACACATGCCCG-AGCCCAGCATGTGCTGCCGCAACCCT-
* *
16139767 GGTCGGGTTCGATCTTAGACTGGGAATGAAATCCGTATGCTTAGACTGGCAGTGAACTCCGTATG
702 --TC--G--CG---TT--ACT-GG---G--ATCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * *
16139832 CCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTCAGCCGGCCAGAGGGGTGGGATGCACAAGC
750 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* ** ** * *
16139897 CGGGGATCGGTCGGGTCCTGCTCT-CCTCCTGCTGATCCTGCTACCACAACCCTCAGTCCGGTC
815 CGAGGATCGGTCGGGTCCCCCTCTATGTGCTGCTGATCCTGCTGCCACAACCCTCAGTCCGGTC
*
16139960 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--------G-GGA
* *
16140025 CGGGCGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCCTGGATCGATAGGGTGGT
57 CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * *
16140090 AGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGGTTGTAAATTCA
122 AGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * * * * *
16140155 TACAATGGTCTCTTAAGCCTTCACATTAAGTTTCATGGTAGGATGACTCGTTTTCTATTTTTCAT
187 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * *
16140220 GATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTAGTCCCCAA
252 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * *
16140285 ACTTGGTAGACATGATCCTTGTACTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAA
317 ACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-A
* *
16140350 AGTGTACAAGATTTTGTGACCGTTTGAAAAACGTGTCCCCATTTCAGACACTTTAATGGCTACTG
380 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * * *
16140415 GCAGAAAACTTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTTGAGGTTTGCTGAGGG
445 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGG
* *
16140480 ATAGGGGGCCAATATATGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACACCCCCCCG
510 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---CCCC-
* * *
16140545 CCGGCCCCCCCGATCGTCGGAACCCCAGTGCCGCCGGTGAGGTTCTCCGGTGATGCTCCGACGAT
571 CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGAT
* * * *
16140610 GGTGCCTCGGTGAAGAAAAATGTGGCACCAACACATG-CCGAGCCCAGCATGTGCTACCGTAACC
636 GGTGCC-CGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
*
16140674 C-TCG-GTT--T-GG-TCCG-AT-CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
700 CTTCGCGTTACTGGGATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * *** * *
16140731 GAAATGAGCGTGCGGGTGCTCAACTGGCCAGAGGAATGGGATGCGCAAGCCGGGGATCGCTCGGG
765 GAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGG
* * * ** * * *
16140796 TCCCCCTCTGTGTGCTACCGATCCTGCTATCAAAACCCTCGGTTC-GTC
830 TCCCCCTCTATGTGCTGCTGATCCTGCTGCCACAACCCTCAGTCCGGTC
** * * * * *
16140844 CAATCTTAGACTGGGAATGAACTCCATATGCCTAAGACAACCGATGAAACGA--G-TGGGCGGAC
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGACGGGCGGGC
* * * * * *
16140906 GGGCACTACGTCGGCCAGAAAGAAGGGATGCGCAAGCCGTGAATTGATAGGGAGGTAGGCGGGTT
66 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* **
16140971 TAGGTACATCTTCATATTT-TGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
16141035 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGTCTCGTTTTCTATTTTTCACGATTTTTAA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
** *** *
16141100 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTAAACCCAAAATTGGTAG
261 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
16141165 ACGTAATCCTTGTACTTTTTTTGGGATGCACAAAAACATTCAGCTAAAAACTCGAAGCGTACAAG
326 ACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
16141230 ATTTTGTGACCATTTCAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTGGCAGCAAACA
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
16141295 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCC
455 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCC
16141360 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAGCTCCTCCCGGCCCCCCC
520 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-CC-CCCGGCCCCCCC
* * *
16141425 GATCGTCGGAACCCTAATGTCGCCGGGT-AGGTTCTCCGACGATGCTCTC-ACGATGGTGCCCGG
582 GATCGTCGGAACCCCAATGCCGCC-GGTCAGGTTCTCCGATGATGCTC-CGACGATGGTGCCCGG
* * *
16141488 TGAAGCAAAATGCGGCACCAACACATGCCCGAGCCCAGAATGTGCTGCCGCAACCCTT-G-G-T-
645 CGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTCGCGTTA
* * *
16141549 CT-GG-TCCG-AT-CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAAAGAGCG
710 CTGGGATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * *
16141610 TGTGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCTAGGATTGG-CTGGGTCCCCCTCT
775 TGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTC-GGGTCCCCCTCT
* * * *
16141674 ATTTGCTGCTGATCCTACTGCCATAACCCTCAGTCTGGTC
839 ATGTGCTGCTGATCCTGCTGCCACAACCCTCAGTCCGGTC
* * *
16141714 TGATCTTAGATTGGGAATGAACTCCGCATGCCTAAGCCAACCGACAAAACGAGTGGACGGGCGGG
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-GGACGGGCGGG
* * *
16141779 CGGGCACTACGCCGACCAGAGTGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
65 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
16141844 TTACGCATATCTTCATAGTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
16141909 TCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCCTTTTCTATTTTTCACGATTTTGG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* *
16141974 AAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTA
260 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
16142039 GACGTGATCCTTATTTTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAA
325 GACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * * * *
16142104 GATTTTCTGACCATTTGAAAAAATTGTCACCATTTCAGACACATTAATGGCTACTGGTAGAAAAC
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
16142169 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAG-GGTTTGATGAGGGATAGGGGT
454 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TAGAGGTTTGATGAGGGATAGGGGG
*
16142233 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA--------CCCCCCCG
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
* *
16142290 ATCGTCGGAACCCTAATGCCGCCGGTCAGGATCTCCG
583 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
16142327 GCGATGCCCT
Statistics
Matches: 5931, Mismatches: 694, Indels: 384
0.85 0.10 0.05
Matches are distributed among these distances:
863 3 0.00
864 40 0.01
865 71 0.01
866 102 0.02
867 4 0.00
868 33 0.01
869 222 0.04
870 230 0.04
871 204 0.03
872 84 0.01
873 11 0.00
874 261 0.04
875 615 0.10
876 5 0.00
877 157 0.03
878 579 0.10
879 408 0.07
880 241 0.04
881 191 0.03
882 99 0.02
883 7 0.00
884 153 0.03
885 31 0.01
886 7 0.00
887 5 0.00
888 5 0.00
889 1 0.00
890 3 0.00
891 51 0.01
892 50 0.01
893 11 0.00
894 37 0.01
895 398 0.07
898 3 0.00
899 140 0.02
900 178 0.03
901 7 0.00
902 203 0.03
903 241 0.04
904 27 0.00
905 183 0.03
906 49 0.01
907 293 0.05
908 8 0.00
909 154 0.03
910 29 0.00
911 89 0.02
912 1 0.00
913 6 0.00
914 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (878 bp):
TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGACGGGCGGGC
GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCGGCGAAGA
AAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTCGCGTTACTGGGA
TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
TGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTATGTGCT
GCTGATCCTGCTGCCACAACCCTCAGTCCGGTC
Found at i:16144825 original size:26 final size:26
Alignment explanation
Indices: 16144789--16144841 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16144779 CCGGTCCGAT
*
16144789 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16144815 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16144841 C
1 C
16144842 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16145739 original size:26 final size:26
Alignment explanation
Indices: 16145688--16145740 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16145678 CCGATCCGAT
** *
16145688 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCATATG
*
16145714 CTTAGACTAAGAATGAACTTCATATG
1 CTTAGACTAAGAATGAACTCCATATG
16145740 C
1 C
16145741 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCATATG
Found at i:16147247 original size:28 final size:28
Alignment explanation
Indices: 16147207--16147263 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
16147197 ACCTGTAAAA
16147207 TCTCAAATGCTCTTTAAAGGGGTGTGAG
1 TCTCAAATGCTCTTTAAAGGGGTGTGAG
*
16147235 TCTCAAATGCTCTTTACAGGGGTGTGAG
1 TCTCAAATGCTCTTTAAAGGGGTGTGAG
16147263 T
1 T
16147264 TCTTGAGGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (28 bp):
TCTCAAATGCTCTTTAAAGGGGTGTGAG
Found at i:16148419 original size:26 final size:26
Alignment explanation
Indices: 16148383--16148461 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
16148373 CCGGTTTGAT
*
16148383 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCATATG
16148409 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16148435 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16148461 C
1 C
16148462 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16149330 original size:25 final size:26
Alignment explanation
Indices: 16149287--16149338 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
16149277 CTGGTCCGAT
16149287 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16149313 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16149338 C
1 C
16149339 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 18 0.69
26 8 0.31
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16150186 original size:26 final size:26
Alignment explanation
Indices: 16150148--16150200 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16150138 GCGGTCTGAT
16150148 CTTAGACCAGGAATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCGTATG
*
16150174 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCGTATG
16150200 C
1 C
16150201 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTCCGTATG
Found at i:16151086 original size:26 final size:26
Alignment explanation
Indices: 16151050--16151102 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16151040 CCGGTCTGAT
* *
16151050 CTTAGACTGGGAATTAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16151076 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16151102 C
1 C
16151103 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16152844 original size:26 final size:26
Alignment explanation
Indices: 16152794--16152845 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16152784 TAGTCCGATT
**
16152794 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
16152820 TTAGATTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
16152846 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:16153721 original size:26 final size:26
Alignment explanation
Indices: 16153685--16153737 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16153675 CTGATCCGAT
* *
16153685 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16153711 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16153737 C
1 C
16153738 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16154594 original size:26 final size:26
Alignment explanation
Indices: 16154565--16154615 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16154555 CCGATCTAAT
*
16154565 CTTAGACTGGGGATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
16154591 CTTAGACTGGGAATGAACTTCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
16154616 GCCTAAGTCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:16155961 original size:901 final size:896
Alignment explanation
Indices: 16149917--16161418 Score: 13812
Period size: 890 Copynumber: 13.1 Consensus size: 896
16149907 GCAGCAAACC
*
16149917 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
1 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* *
16149982 GCACATCATGTGTGCACA--CCCCCGG-CCCCCCGATCG-CTGAAACCCCAATGCCGTCGGTCAG
66 GCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAG
* ** ** * *
16150043 GTTCTTCGGTGATGCTCCGGTGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGTCCG
130 GTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG-GGCACCAACACATGCCCG
* * * * * *
16150108 AGCCCAGCATGTGCTGTCACAACCCTCAGTGC-GGTCTGATCTTAGACCAGGAATGAACTCCGTA
194 AGCCCAGCATGTGCTGCCGCAACCCTCGGT-CTGGTCCGATCTTAGA-CTGGGATGAACTCCGTA
*
16150172 TGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCA
257 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * * * *
16150237 GCCGGCTAGAGGGGCGGGATGCGCAAGCAGGGGATCGGCTGGGTGCCCCTCTACGTGCT-ACCGA
322 ACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAC-CGGTCCCCCTCTGCGTGCTGA-CGA
* * *
16150301 TCCTGCTGCTGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
385 TCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * *
16150366 CAACCGACGAAATGAGCGGACGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGAGATGCACAAG
450 CAACCGACGAAACGA-CGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
*
16150431 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
514 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* *
16150496 TTTTTTGGCTTGTAAATTCATACAATGGTCCCTTATGCCTTCACGTGAAGTTTCATGGCAAGACG
579 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
16150561 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGCTTCGAGATTTTTGAAAATTTTTTC
644 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * * * * *
16150626 GGAAGGAGTTTTGGTCCCAAACTTGTTATACA-CGATCCTTGTATTTTTTTTGGCATGCACAAAA
709 GGAAGGATTTTTGGCCCCAAACTTGGTAGA-AGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
16150690 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTATGAGCATTTGAAAAAAGTGTCCCCATTTC
773 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
16150755 AGACAC-TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
838 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
16150813 TGTGAGTTCTTCAGGTTTGATGAGGGATAGGGGGCGAATATAAGGGCCAAGTACCAGCACCCATC
1 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *
16150878 GCACATCATGTGTGCACACCCCTCCCCCTGG-CCCCCCGATTGTCGGAACCACAATGCCGTCGGT
66 GCACATCATGTGCGCACA--CC-CCCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGT
** ** * *
16150942 CAGGTTCTCCGACGATAATCCGGTGATGGTGCCCTGATGAAGAAATAA-GTGGCACCAACACATG
127 CAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAA-AATG-GGCACCAACACATG
* * * * * * *
16151006 CCAGAGCCCAGCATATGCTGCTGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATTAACTCC
190 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG-ATGAACTCC
* *
16151071 TTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGC
254 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGC
* * * * * * * *
16151136 TTAGCCGACCAAAGGGGCAGGATGCGCAAGTCGAGGATCGGCCGGGTCCCCCTCT--GTG-T---
319 TCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACC-GGTCCCCCTCTGCGTGCTGAC
* * * ** *
16151195 G---CTG---CCACAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTTTGTATCCCTAA
383 GATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * **
16151254 GCTAATCGACAAAATGAGCGGGTGGGCGGGCGGCCACTACACCGGCCAGAGAGACGGGATGCGCA
448 GCCAACCGACGAAACGA-CGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* *
16151319 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
512 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* * *
16151384 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTAATCGCAAGA
577 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
16151449 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTT
642 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * *
16151514 TCAGAAAGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCAC-AA
707 TCGGAAGGATTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
16151578 AAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTTGTCCCCATT
772 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG-TGTCCCCATT
* * *
16151642 TCAGACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAATTAC-CTGTAA-GGGG
836 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA-TGCTCTTTAAGGGGG
** *
16151702 -GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATT
1 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
** * * ** ** * * ** *
16151766 GCACATTTTGTGTGCACACCCCTTCCCCAGG-CCCTCCGATCACCAAAACCACATTGCCACCGCT
66 GCACATCATGTGCGCACA-CCC--CCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGT
* ** * * * *
16151830 CAGGTTCTTCGGTGATGCTCCGATGATGGTGCCTCGACGAAGAAAAATATGGCACCAGCACATGC
127 CAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT-GGGCACCAACACATGC
** *
16151895 CCGAGCCCAGCATGTAATGCTGCAA-CC-C--TC--G---G-TC-----C---G--G---TCCG-
191 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGATGAACTCCGT
* *
16151936 AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGATCGTGCGGGTGCTC
256 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTC
* * *
16152000 AGCCAGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGT--CCC-CT---T-CTG-C--
321 AACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACC-GGTCCCCCTCTGCGTGCTGACGA
* * * *
16152055 T--TGCTACCACAACCCTCGGTCTGATCCGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGC
385 TCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
16152118 CAACCGACGAAAAGAGCAGGCAGGCGAGCAGGG-GGGCTCTACGTCGGCCAGAGAGACGGGATGC
450 CAACCGACGAAACGA-C--G--GGCGGGC-GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
* * *
16152182 GCAAGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTTTGCGTGCCAAT
509 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAAT
* *
16152247 GCCATTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCA
574 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
16152312 AGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATT
639 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
*
16152377 TTTT-GGAAGGATTTTTGGCCCTAAACTTGGTAGACA-TGATCCTTGTATTTTTGTTGGCATGCA
704 TTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGA-AGTGATCCTTGTATTTTTGTTGGCATGCA
* *
16152440 CAAAAAAATTCAACTTAAAAA-TCGAAGTGTATAAGATTTTGTGACCATTTTGAAAAAAGTG-CC
768 CAAAAAAATTCAGC-TAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAAGTGTCC
* * * * * *
16152503 CTAATTTCAGACACTTTAATGCCTATTCGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGA
831 C-CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
16152568 GG
895 GG
** *
16152570 TGTGAGTTCTCAAGGTTTGATGATGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
1 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * *
16152635 GCACATCACGTGCACACACCCCCCTGGCCCCCCCGATCGCCGAAACCCCAATTCCGTCGGTCAGG
66 GCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
* * * *
16152700 TTCT-C--C---G----G-CGATGATGACCCGACGAAGAAAAATGCGGCACCAACATAAGCCCGA
131 TTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG-GGCACCAACACATGCCCGA
* * * * *
16152754 GCCCAGCATGTGCTACCGCAACCCTCAGTCTAGTCCGATTTTAGACTGGGAATGAACTCTGTATG
195 GCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG-ATGAACTCCGTATG
* * * * *
16152819 CTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACACACGAAACGAGCATGGGGGTGCTCAAC
259 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * *
16152884 CAGCCAGAGGGGCGGGATG-GCAAGCCGGGGATCTGTCGGGTCCCCCTCTGCGTGCT-ACCGATC
324 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GACCGGTCCCCCTCTGCGTGCTGA-CGATC
* * * ** * * *
16152947 CTGCTGCTGCAACCCTTGGTCCAGT-TCAATTTTAGATTGGGAATGAACTCCGTATGCCTAAGCC
387 CTGCTACCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * ** ** *
16153011 AATCGATGAAAC-A--AACGGGCGGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCC
451 AACCGACGAAACGACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
**
16153073 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTT
516 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
* *
16153138 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGACAAC
581 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
** ** *
16153203 TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGGGGTTTGGGATTTTTTAAAATTTTTTTC-
646 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCG
* * * * * *
16153267 GAAGGAGTTTTGGCCCCAAACGTT-TTAGATGTGATCGTTGTATTTTTTTTGGAATGCAC-AAAA
710 GAAGGATTTTTGGCCCCAAAC-TTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
16153330 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
774 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
16153395 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGAG
839 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
16153453 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAACATAA-GGCCAAGTACCAGCACCCATC
1 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * ** * * *
16153517 GCACATCATGTGCGCA-AACCCCCCGACCCCCCCGATCACCGGAACCCCAATGTCGCCGGTTAGG
66 GCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
* * * * * *
16153581 TTCTCCGACGATGCTTCGACGATGATGCCTCGACGAAGAAAAATGCGGCACCGACACATGCTCAA
131 TTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG-GGCACCAACACATGCCCGA
* * * *
16153646 GCCCAGCATGTGCTGCCGCAACCCTTGGTCTGATCCGATCTTAGACTGGGAATGAATTTCGTATG
195 GCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG-ATGAACTCCGTATG
* * * * *
16153711 CTTAGACTGGGTATGAACTCCGTATGCCTAAGTCAA-CCATGGAATGAGCGTGCGGGTGCTCAGC
259 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * * * * *
16153775 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCTTTTGCATGCTGCCAATCC
324 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACC-GGTCCCCCTCTGCGTGCTGACGATCC
* * ** * *
16153840 TGTTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACAGGGAATGAACTCCATATGCCTAAGCCAA
388 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
16153905 CCGACGAAACGA-----------GCGGG-----CG--GG--AGAGAGACGGGAGGCGCAAGCCGT
453 CCGACGAAACGACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * *
16153950 GGATTGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
518 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
* *
16154015 ATGGCTTGTAAATTCATACAATGGTCCCTTAACCCTTCACGTGAAGTTTCATGGCAAGATGACTC
583 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * ** ** * *
16154080 GTTTTCTACTTTTCATGATTCTCAAAACTTTTTTGGGTTTGGGATTTTTTAAAATTTTTTCGAAA
648 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* ** * *
16154145 GGAGTTTTCACCCCAAACTTGGTAGACA-TGATCCTTGTAATTTTGTTGGAATGCACAAAAAAAT
713 GGATTTTTGGCCCCAAACTTGGTAGA-AGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
16154209 TCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAC
777 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
16154274 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
842 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * *
16154329 TGTGAGTTCTCGAGGTTTTATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATC
1 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* *
16154394 GCACAT-ATGTGTGCACACCCCCCCACCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTC
66 GCACATCATGTGCGCACA--CCCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTC
* * * * *
16154458 AGGTTCTCCGACGATGCTCCGATGACGGTGCCCCGACGAAGAGAAATACGGTACCAACACATGCC
128 AGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT-GGGCACCAACACATGCC
* * * * **
16154523 CGAGCCCAGCATGTACTGCCGTAACCCTCGGTCCGATCTAATCTTAGACTGGGGATGAACTCCGT
192 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACT-GGGATGAACTCCGT
* * * *
16154588 ATACTTAGACTGGGAATGAACTTCGTATGCCTAAGTCGACCCATGAAACGAGCGTGCGGGTGCTC
256 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTC
** * * * *
16154653 -ACCGGCCAGAGGGGCGGGATGCGCAAGCTAGGGATCGGTCGGGTCCCCCTCTGCGTAC-CACCG
321 AACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GACCGGTCCCCCTCTGCGTGCTGA-CG
* * * * * * *
16154716 ATCCTGCTACCGTAACCCTCAGT-TCGGTCTGATCCTAGACTAGGAATGAAGTCTGTATGCGTAA
384 ATCCTGCTACCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
** * * *
16154780 GCCAACTAAC-AAA--ACGAGCGGGCGGGCGGGCACTACGTCGGGCAAAGAGACGGGATGCGCAA
448 GCCAACCGACGAAACGACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * *
16154842 GCCGTGGATCAATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCATGCAAATGCCA
513 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
16154907 TTTTTATGGCTTGTAAATTCATACAAAT-GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
578 TTTTTATGGCTTGTAAATTCATAC-AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
16154971 CGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGTGATTTTTTAAAATTTTT
642 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * *
16155036 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTTTTGGCATGCACAAA
707 TCGGAAGGATTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
16155101 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCCATTT
772 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
16155166 TAGACACTTTAATGGCTACTGGGAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
837 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
16155226 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATT
1 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * *
16155291 GCACATTATGTGCGCACACCCCCCCGGCCCCCCCGATTGTCGGAACCACAACGCCGTCGGTCAGG
66 GCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
* * * *
16155356 TTCTTCGGCGATGCTCCGACGATGGTGCCTCGACGAAGAAAAAAT-AGCACCAACACATGCCCGA
131 TTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAG-AAAAATGGGCACCAACACATGCCCGA
* * * * * * * *
16155420 CCCCAGCATGTGCTACCACAACCCTCGGTCTGGTCTGATATTATATTGGGATGAACACCGTATGC
195 GCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGATGAACTCCGTATGC
* * *
16155485 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGTGCTCAATC
260 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACC
* * * * *
16155550 GGCCAGAAGGGCGGGATGTGCAAGCTGGGGATCGGCCGGTCGCCCTCTGCGTGCTGACGATCCTG
325 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGTCCCCCTCTGCGTGCTGACGATCCTG
* *
16155615 CTACCACAACCCTCAGT-TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
390 CTACCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* *
16155679 CGACGAAACGAGCGGGCGGGCGGGCGAGCGGGCACTACGTCGGCCAGAAAGACGGGATGCGGAAG
454 CGACGAAACGA-CGGGCGGGC--G-G-GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* * * *
16155744 CCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGTACATCTTCATATTTTTGCATGCCAATGCCAT
514 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* *
16155809 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCTAGACG
579 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
16155874 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTT
644 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * * *
16155939 GGAAGGATTTTTGGCTCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCATAAAAA
709 GGAAGGATTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
16156004 AATACAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
774 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
16156069 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAATTCTGAAATGCTCTTTAAGAGGG
839 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
** * * *
16156127 TGTGAGTTCTCAAGGGTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAACACCCATC
1 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * *
16156192 GCACATCCTGTGCACACACTCCCCTGG-CCCCCCGATCATCAGAACCCCAATGCCG-CTGGTCAG
66 GCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAG
*** *
16156255 GTTCTCC-AGCGATAAACC-AGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAACACATGCC
130 GTTCTCCGA-CGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATG-GGCACCAACACATGCC
* * * * *** * *
16156318 CAAGCCCAGCATGTGCTGTCGTAACCCTTGGTCCAATCCGATATTAGACTGGGATGAACACCGTA
192 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGATGAACTCCGTA
* * *
16156383 TGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGTGCTCA
257 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * * * *
16156448 ATCGGCCAGAAGGGCGGGATGTGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGAC
322 ACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GACCGGTCCCCCTCTGCGTGCTGACGAT
* ** * *
16156513 CCTGCTACCACAACCCTTAGT-TCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGC
386 CCTGCTACCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
16156577 CAACCGACGAAACGA-------GCGGGCGGGCACTACGCCGACGAGAGAGACGGGATGCGCAAGC
450 CAACCGACGAAACGACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * * *
16156635 CTTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTCCATATTTCTACGTGCCAAAGCCATT
515 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
16156700 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
580 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
**
16156765 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCG
645 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * *
16156830 GAAGGGTTTTTGGCCCCAAACTTGGTAGACA-TGATCCCTGTATTTTTTTTGGCAAGCACAAAAA
710 GAAGGATTTTTGGCCCCAAACTTGGTAGA-AGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
16156894 AATTCAGCTAAAAACTCGAGGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCGTTTCA
774 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
16156959 GACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATCCTCTTTAAGGAGG
839 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
16157017 TGTGAGTTTTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAGGTACCAGCACCCATT
1 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
*
16157082 GCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATTG-CTGGAACCCCAATGCCGTCGGTCAG
66 GCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAG
* ** **
16157145 GTTCTCCGACGA---T-------T-GTGACCCGATAAAGAAAAATGCGGCACCAACACATGCATG
130 GTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG-GGCACCAACACATGCCCG
*
16157199 AGCCCAGCATGTGCTACCGCAA-CC-C--TC--G---G-TC-----C--GG-T---CT--G-AT-
194 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGATGAACTCCGTATG
* ** * *
16157239 CTTAGACTGTGAATGAACTCCGTACACCTAAGTCTACCCACGAAACGAGCGTGCGGGTGCTCAGC
259 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * * * * * * *
16157304 CGGCCA-AGGGGCAGGATGCACAAACCGGGGATCGGTA-GGGTCACCCTTTGCATGCTGCCGATC
324 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-G-ACCGGTCCCCCTCTGCGTGCTGACGATC
* * * ** * * *
16157367 CTGC-CCCGTAACCCTTGGTCCAGTCTAATCTTAGACTAGGAATGAACTCCGTAAGCCTAAGCCA
387 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * * *
16157431 ACC-AATAAA--A----TGAGCGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAGCCC
452 ACCGACGAAACGACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
16157489 TAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
517 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
*
16157554 TATGGCTTGTAAATTCATA-AATGGTCCCTTAACCCTTCACGTGAAGTTTCATGGCAAGACGACT
582 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** * * *
16157618 AGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTACAATTTTTTCAGT
647 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * *
16157683 TGG-TGTTTTGGTCCCAAACTTGGTAGACA-TGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
712 AGGAT-TTTTGGCCCCAAACTTGGTAGA-AGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
16157746 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTTAAGAAAGTGTCCCCATTTTAG
775 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
16157811 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGG
840 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
16157868 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
1 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* ** * ** * * **
16157933 ACACATCATGTGCGCACA--CCCCCTACCGCCCCGATCACCGAAACCTCAATGCCACCGGTCAGG
66 GCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
* * * *
16157996 TTCT-C--CG--G---C-A--A---TGCTCCGACGAAGAAAAATACGGCAACAACTCATGCCCGA
131 TTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT-GGGCACCAACACATGCCCGA
*
16158047 GCCCAGCATGTGCTGCTGCAA--C-C---C---T-C-A--TT---CT--G--G---TCCG-AT-C
195 GCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGATGAACTCCGTATGC
* * *
16158087 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATTCGGGTGCTCAACC
260 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACC
** * * *
16158152 AACCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTGTCGATCCT
325 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACC-GGTCCCCCTCTGCGTGCTGACGATCCT
** * * * * *
16158217 GCTGTCGCTACCCTCGGTCTGGTCCGATCTTAGACTGGGAGTGAACTACATATGCCTAAGCCAAC
389 GCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * *
16158282 CGACGAAATGAGCGGGCGGGCAGGTGGGAACTACGCCGGCCAGAGAGATGAGATGCGCAAGCCGT
454 CGACGAAACGA-CGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
*
16158347 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTT
518 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
* * *
16158412 ATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACAAC-C
583 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
** * *
16158476 GTTTTCTATTTTTCACAATTTTTGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTCGAAA
648 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* * * * * *
16158541 GGAGTTTTGGCCCCAAGCTTGGCAGACGTGATCATTGTATTTTTGTTGGCATGCACAAACAAATT
713 GGATTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
16158606 CAGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
778 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
16158671 CTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGG
843 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
** *
16158724 TGTGAGTTCCCGAGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATC
1 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * ** *
16158789 GAACATCCTGTGTGCACA-CCCCCCGGCCCCCCCGATCG-CAGGAACCCCAATATCGCCGGTCAG
66 GCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAG
** *
16158852 GTTCTCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCA
130 GTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG-GGCACCAACACATGCCCG
**
16158917 AGCCCAGCATGTGCTATCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
194 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG-ATGAACTCCGTAT
* * *
16158982 GCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAACAAGCGTGCGGGTGCTCAA
258 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAA
* * * *
16159047 CCGGCCAGAGGGGC-AGATGTGCAAGTCGGGGATCGACCGAGTCCCCCTCTGCGTGCTGCCGATC
323 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCG-GTCCCCCTCTGCGTGCTGACGATC
* * * * *
16159111 CTACTACCGCAACCCTTGGTCTGAG-CTTATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGTC
387 CTGCTACCGCAACCCTCGGTCTG-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* **
16159175 AACCAACGAAACGAGCGGGCAGGTGAGCGGGCGGGCACTAAATCGGCCAGAGAGACGGGATGCGC
451 AACCGACGAAACGA-CGGGC--G-G-GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * *
16159240 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGC
511 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
* *
16159305 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCGTGGCAAG
576 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
16159370 ACGACCCGTTTTCTATTTTTCATGATTTTTGAAACATTTTATGGTACGGGATTTTTTAAAATTTT
641 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * * * *
16159435 TTCAGAAGAAGTTTTGG-CCCAAATTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AA
706 TTCGGAAGGATTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
16159498 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCCATT
771 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
16159563 TCAAACAATTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACGGGG
836 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
16159624 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
1 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* **
16159689 GCACATCATGTGCGCACACCCCGCCGG-CCCCCCGATCGTCGGAACCCCAATGTTGTCGGTCAGG
66 GCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
* **
16159753 TTCTCCGGCGATGCTCCGACGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACACATGCC
131 TTCTCCGACGATGCT-C--CGACGATGGTGCCCCGACGAAGAAAAATG-GGCACCAACACATGCC
* *
16159818 CGAGCCTAGCATGTGCTGCTGCAA-CC-C--TC--G---G-TC-----C-----TG---TCCG-A
192 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGATGAACTCCGTA
* * * * * *
16159859 T-CCTAGACTGGGAATGAACTCTGTTTGCCTAATTCAACCCATGAAACGAGCGAGCGGGTGCTCA
257 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * *
16159923 ACTGGCCAGAGGGGCGGGATGCGCAAGACGGGGATCAGTCGGGTCCCCCTCTACGTGCT-ACTGA
322 ACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GACCGGTCCCCCTCTGCGTGCTGAC-GA
* * *
16159987 TCCTGCTACCGTAACCCTTGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
385 TCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
** * * *
16160052 CAACCGATTAAACGA---GCGGGCGGGCGGGCACTATGTCGACTAGAGAGACGGGATGCGCAAGC
450 CAACCGACGAAACGACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * *
16160114 CATGGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATT
515 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
* *
16160179 TTTATGGCTTGTAAATTCATACGATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGA
580 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
16160244 CTCATTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTCG
645 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * * *
16160308 GAAGCTG-TTTTT-ACCCCATACTTGGTGGACGTGATCCTTGTATTTTTATTGGCATGCACAAAA
710 GAAG--GATTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
16160371 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCGATTTC
773 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
16160436 AGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGG
838 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
16160495 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGTGCCAAGTACCAGCACCCATC
1 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
16160560 GCACATCATGTGCGCACA------------CCCC---C--CGG--CCCC----CC--CGGTCAGG
66 GCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
* ** *
16160600 TTCTCCGATGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCTGA
131 TTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG-GGCACCAACACATGCCCGA
* * * *
16160665 GCCCAGCATGTGCTGTCACAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTTCGTATG
195 GCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG-ATGAACTCCGTATG
* * * ** * *
16160730 CTTAGATTGGGAATGAACTTCGTATGCCTAAGTCAACTCACGAAATAAGCGTGCGGATGCTCAGC
259 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * * *
16160795 CGGCCAGAGGGGCGGGATGCGTAAGTCGGGGATCGATCGAGTCCCCCTCTGCGTGCTGCCGATCC
324 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCG-GTCCCCCTCTGCGTGCTGACGATCC
* * * * * *
16160860 TGCTGCCGCAACCCTTGCTCTGAG-CTTATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCA
388 TGCTACCGCAACCCTCGGTCTG-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
16160924 ACCGACGAAACAAGCGGGCAGGCGAGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
452 ACCGACGAAACGA-CGGGC--G-G-GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * *
16160989 CGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
512 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
*
16161054 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGA
577 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * *
16161119 CAACTCATTTTCTATTCTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAA-TTTT
642 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * *
16161183 TCGGAAGG-TGTTTTTGCCCCAAACTTGGTGGATGTGATCCTTGTATTTTTGTTGGCATGCACAA
707 TCGGAAGGAT-TTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
16161247 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTTACCATTTG-AAAAAGTGTCCCCATT
771 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
16161311 TCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGG
836 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
16161372 TGTGAGTTCTTTAAGGTTTGATGTAGTGGATA-GGGGCCAATATAAGG
1 TGTGAGTTC-TTGAGGTTTGATG-AG-GGATAGGGGGCCAATATAAGG
16161419 AATACAGCAC
Statistics
Matches: 9248, Mismatches: 1049, Indels: 635
0.85 0.10 0.06
Matches are distributed among these distances:
844 60 0.01
845 4 0.00
846 7 0.00
847 137 0.01
848 53 0.01
849 51 0.01
850 44 0.00
851 354 0.04
852 175 0.02
853 54 0.01
854 64 0.01
855 59 0.01
856 85 0.01
857 377 0.04
858 45 0.00
859 6 0.00
860 10 0.00
861 2 0.00
862 162 0.02
863 2 0.00
864 6 0.00
865 61 0.01
866 293 0.03
867 66 0.01
868 16 0.00
869 90 0.01
870 430 0.05
871 255 0.03
872 1 0.00
873 3 0.00
874 14 0.00
875 244 0.03
876 176 0.02
877 189 0.02
878 442 0.05
879 88 0.01
880 303 0.03
881 150 0.02
882 43 0.00
883 120 0.01
884 260 0.03
885 54 0.01
886 4 0.00
887 12 0.00
888 189 0.02
889 75 0.01
890 877 0.09
891 47 0.01
892 285 0.03
893 166 0.02
894 92 0.01
895 78 0.01
896 205 0.02
897 516 0.06
898 14 0.00
899 130 0.01
900 391 0.04
901 712 0.08
902 337 0.04
903 63 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
GCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
TTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGGGCACCAACACATGCCCGAG
CCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGATGAACTCCGTATGCT
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCG
GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGTCCCCCTCTGCGTGCTGACGATCCTGC
TACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ACGAAACGACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
TTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
Found at i:16156395 original size:25 final size:26
Alignment explanation
Indices: 16156361--16156411 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16156351 CAATCCGATA
*
16156361 TTAGACTGGG-ATGAACACCGTATGC
1 TTAGACTGGGAATGAACACCATATGC
*
16156386 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACACCATATGC
16156412 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TTAGACTGGGAATGAACACCATATGC
Found at i:16158986 original size:26 final size:26
Alignment explanation
Indices: 16158957--16159009 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16158947 CTGGTCCGAT
16158957 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16158983 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16159009 C
1 C
16159010 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16160740 original size:26 final size:26
Alignment explanation
Indices: 16160704--16160756 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16160694 CTGGTCCGAT
16160704 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGATTGGGAATGAACTTCGTATG
16160730 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGATTGGGAATGAACTTCGTATG
16160756 C
1 C
16160757 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTTCGTATG
Found at i:16161176 original size:878 final size:878
Alignment explanation
Indices: 16158086--16161418 Score: 4384
Period size: 878 Copynumber: 3.8 Consensus size: 878
16158076 CTGGTCCGAT
* * * * *
16158086 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATTCGGGTGCTCAAC
1 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAAC
** * * * * *
16158151 CAACCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGAGTCCCCCTCTGCGTGCTGCCGATCC
** * * * * * *
16158216 TGCTGTCGCTACCCTCGGTCTG-GTCCGATCTTAGACTGGGAGTGAACTACATATGCCTAAGCCA
131 TGCTACCGCAACCCTTGGTCTGAG-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
16158280 ACCGACGAAATGAGCGGGCGGGCA-GGTGGGAACTACGCCGGCCAGAGAGATGAGATGCGCAAGC
195 ACCGACGAAACGAGCGGGCAGGCAGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* **
16158344 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
260 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
* *
16158409 TTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACAA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAA
* ** *
16158474 C-CGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTCG
390 CTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * * *
16158538 AAAGGAGTTTTGGCCCCAAGCTTGGCAGACGTGATCATTGTATTTTTGTTGGCATGCACAAACAA
455 GAAGGAGTTTTTGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
16158603 ATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
520 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
16158668 ACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTT
585 ACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
** * * *
16158732 CCCGAGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGAACATCC
650 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
*
16158797 TGTGTGCACACCCCCCGGCCCCCCCGATCGCAGGAACCCCAATATCGCCGGTCAGGTTCTCCGAC
715 TGTGCGCACA-----------CCCCG--C-CAGG-ACCCC-----C-CCGGTCAGGTTCTCCGAC
*
16158862 GATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCAAGCCCAGCAT
759 GATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCAT
*
16158927 GTGCTATCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
824 GTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACT-CGTATG
*
16158983 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAACAAGCGTGCGGGTGCTCAAC
1 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAAC
* *
16159048 CGGCCAGAGGGGC-AGATGTGCAAGTCGGGGATCGACCGAGTCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGAGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
16159112 TACTACCGCAACCCTTGGTCTGAGCTTATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAA
131 TGCTACCGCAACCCTTGGTCTGAGCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * **
16159177 CCAACGAAACGAGCGGGCAGGTGAGCGGGCGGGCACTAAATCGGCCAGAGAGACGGGATGCGCAA
196 CCGACGAAACGAGCGGGCAGG-CA--GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
*
16159242 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGCCA
258 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
* *
16159307 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCGTGGCAAGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * * *
16159372 GACCCGTTTTCTATTTTTCATGATTTTTGAAACATTTTATGGTACGGGATTTTTTAAAATTTTTT
388 AACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *
16159437 CAGAAGAAG-TTTTGGCCCAAATTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAA
453 CGGAAGGAGTTTTTGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
16159500 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTC
518 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * * *
16159565 AAACAATTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACGGGGTGTGAG
583 AGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
16159630 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
648 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
*
16159695 CATGTGCGCACACCCCGCCGGCCCCCCGATCGTCGGAACCCCAATGTTGTCGGTCAGGTTCTCCG
713 CATGTGCGCACACCCCGCCAG------GA-C--C----CCCC--------CGGTCAGGTTCTCCG
* * ** * *
16159760 GCGATGCTCCGACGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACACATGCCCGAGCCT
757 ACGATGCTCCG--G-TGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCC
*
16159825 AGCATGTGCTG-CTGCAACCCTCGGTCCT-GTCCGATCCTAGACTGGGAATGAA--C---T-
819 AGCATGTGCTGTC-GCAACCCTCGGT-CTGGTCCGATCTTAGACTGGGAATGAACTCGTATG
* * * *
16159879 C------------TG---T---T-TGCCTAATTCAACCCATGAAACGAGCGAGCGGGTGCTCAAC
1 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAAC
* * * * * * *
16159925 TGGCCAGAGGGGCGGGATGCGCAAGACGGGGATC-AGTCGGGTCCCCCTCTACGTGCTACTGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGA-CCGAGTCCCCCTCTGCGTGCTGCCGATC
* *
16159989 CTGCTACCGTAACCCTTGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTTGGTCTGAGCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * *
16160054 ACCGATTAAACGAGC--G--GGC-GGGCGGGCACTATGTCGACTAGAGAGACGGGATGCGCAAGC
195 ACCGACGAAACGAGCGGGCAGGCAGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * *
16160114 CATGGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATT
260 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
* * *
16160179 TTTATGGCTTGTAAATTCATACGATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAA
*
16160244 CTCATTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTCG
390 CTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
** * * ** *
16160308 GAAGCTGTTTTTACCCCATACTTGGTGGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAA
455 GAAGGAGTTTTTGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
16160373 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCGATTTCAG
520 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
16160438 ACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
585 ACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
16160503 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGTGCCAAGTACCAGCACCCATCGCACATCA
650 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
*
16160568 TGTGCGCACACCCC-CC-GG-CCCCCCCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCC
715 TGTGCGCACACCCCGCCAGGACCCCCCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCC
* *
16160630 CGACGAAGAAAAATGTGGCACCAACACATGCCTGAGCCCAGCATGTGCTGTCACAACCCTCGGTC
780 CGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTC
*
16160695 TGGTCCGATCTTAGATTGGGAATGAACTTCGTATG
845 TGGTCCGATCTTAGACTGGGAATGAAC-TCGTATG
* * * * *
16160730 CTTAGATTGGGAATGAACTTCGTATGCCTAAGTCAACTCACGAAATAAGCGTGCGGATGCTCAGC
1 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAAC
* *
16160795 CGGCCAGAGGGGCGGGATGCGTAAGTCGGGGATCGATCGAGTCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGAGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
16160860 TGCTGCCGCAACCCTTGCTCTGAGCTTATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAA
131 TGCTACCGCAACCCTTGGTCTGAGCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
16160925 CCGACGAAACAAGCGGGCAGGCGAGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAC
196 CCGACGAAACGAGCGGGCAGGC-A--GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
16160990 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
258 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
*
16161055 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
16161120 AACTCATTTTCTATTCTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAA-TTTTT
388 AACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* ** *
16161184 CGGAAGGTGTTTTTGCCCCAAACTTGGTGGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
453 CGGAAGGAGTTTTTGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
16161249 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTTACCATTTG-AAAAAGTGTCCCCATTTC
518 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
16161313 AGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
583 AGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
16161378 TTCTTTAAGGTTTGATGTAGTGGATA-GGGGCCAATATAAGG
648 TTC-TTGAGGTTTGATG-AG-GGATAGGGGGCCAATATAAGG
16161419 AATACAGCAC
Statistics
Matches: 2158, Mismatches: 201, Indels: 172
0.85 0.08 0.07
Matches are distributed among these distances:
843 2 0.00
844 88 0.04
845 2 0.00
847 25 0.01
850 1 0.00
851 1 0.00
855 4 0.00
859 1 0.00
861 1 0.00
863 3 0.00
866 1 0.00
869 13 0.01
870 415 0.19
871 206 0.10
872 1 0.00
874 5 0.00
876 1 0.00
877 134 0.06
878 449 0.21
879 16 0.01
880 5 0.00
881 1 0.00
884 2 0.00
886 2 0.00
887 1 0.00
889 5 0.00
891 1 0.00
892 3 0.00
893 1 0.00
894 1 0.00
896 114 0.05
897 73 0.03
898 2 0.00
899 117 0.05
900 307 0.14
901 61 0.03
902 2 0.00
903 89 0.04
904 2 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (878 bp):
CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAAC
CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGAGTCCCCCTCTGCGTGCTGCCGATCC
TGCTACCGCAACCCTTGGTCTGAGCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCAGGCAGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAAC
TCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
AAGGAGTTTTTGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCGCCAGGACCCCCCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCC
GACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCT
GGTCCGATCTTAGACTGGGAATGAACTCGTATG
Found at i:16162352 original size:26 final size:26
Alignment explanation
Indices: 16162323--16162372 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16162313 GTCCGATCTC
16162323 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
*
16162349 AGACTGGGAATTAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
16162373 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:16163264 original size:26 final size:25
Alignment explanation
Indices: 16163224--16163272 Score: 80
Period size: 26 Copynumber: 1.9 Consensus size: 25
16163214 CCGGTCTGAT
16163224 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAAC-TCGTATG
*
16163250 CTTAGACTGGGAATGAACTCGTA
1 CTTAGACTGGAAATGAACTCGTA
16163273 CGCCTAACTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAAATGAACTCGTATG
Found at i:16163839 original size:901 final size:899
Alignment explanation
Indices: 16161743--16164556 Score: 3953
Period size: 902 Copynumber: 3.1 Consensus size: 899
16161733 TGGTAAGTAC
*
16161743 GGTTTAGGCACAT-TT-ATA--T-TGCATGCC-ATG-CATTTTT-TGGCTT-TAAATTC-TAAAA
1 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
16161798 TGGTCTC-TAAG-CTTCACGTGAAGTTTCAT-GCAAGAGGACTCGTTTTCTATTTTTCAGGATTT
66 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * *
16161860 TCAAAACTTTTTGTGGTTT-GGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGATCCAAACTT
131 TCAAAACTTTTT-T-ATTTCGGGATTTTTTAAAA-TTTTTCGGAAGGATTTTTGGACCCAAACTT
* *
16161924 GTTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
193 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
16161989 ACAAGATTTTGTGACCAATTGAAAAACGTGTCCCCATTTCAGACAGTTTAATGGCTACTGGCAGC
258 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
16162054 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGG
323 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * *
16162119 GGGCCAATATAAGGGCCAAGTTCTAGCACCCATCGCACATCATTGGTGCACAC-CCCCC-GCCCC
388 GGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATT-GTGCACACACCCCCTGCCCC
* *
16162182 CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC
452 CCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCC
* * * * * *
16162247 GGCAAAGAAAAATGCGACACCAGCACATGTCC-GAGCCCAGTATGTGCTACCGCAACCCTCTGTC
517 GACGAAGAAAAATGTGGCACCAGCACATG-CCTGAGCCCAGCATGTGCTACCGCAACCCTCGGTC
* * * * *
16162311 CAGTCCGATCTCAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATTAACTCCGTATGCCTA
581 CGGTCCGATCTAAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTACGCCTA
* *
16162376 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGGCAGAGGGGTGGGATGCGCAAGCTGGG
646 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGAGCAGAGGGGCGGGATGCGCAAGCT-GG
** * * * * * **
16162441 GATTAGTCGGGTCCCCCTCTGCGTGTTGTCAATCCTACTACCGCAACCCTCGGTCTGGTTTGATC
710 GATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGATCTGGTCCGATC
* * * * * * * *
16162506 TTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACTGACGAAACAAGAGGGCAGGCTGGCAGGT
775 TTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGC
* *
16162571 AGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
840 AAGCATTAC-CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
16162632 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
1 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
16162697 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTT
66 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* *
16162762 TCAAAAC-TTTTTATGGTTCGGGGTTTTTTAAAATTTATTCGGAAGGATTTTTGGTCCCAAACTT
131 TCAAAACTTTTTTAT--TTCGGGATTTTTTAAAATTT-TTCGGAAGGATTTTTGGACCCAAACTT
*
16162826 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGT
193 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
16162891 ACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGC
258 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
16162956 AAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
323 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
16163021 GGGCCAGTATAAGGGCCAAGTACCAACACCCATCGCACATCATT-TGCACACATCCCCCTGACCC
388 GGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATTGTGCACACA-CCCCCTG-CCC
*** * * *
16163085 CATTGATTGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCC
451 CCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCC
*
16163150 CGACGAAGAAAAATGTGGCACCAGCACATGCCTCAGCCCAGCATGTGCTACCGCAACCCTCGGTC
516 CGACGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCGGTC
* * *
16163215 CGGTCTGATCTTAGACTGGAAATGAACTTCGTATGCTTAGACTGGGAATGAACT-CGTACGCCTA
581 CGGTCCGATCTAAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTACGCCTA
* ** * * * *
16163279 ACTCAACAGACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGATGGGCGGGATGTGCAAGCCTGG
646 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGAGCAGAGGGGCGGGATGCGCAAG-CTGG
* *** *
16163344 GATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTATTGTTGCAACCCTCAATCTGGTCCGATC
710 GATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGATCTGGTCCGATC
* * *
16163409 TTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGAGGAAACGAGCGAGCAGGCGGGCGGGC
775 TTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGC
*
16163474 AAGCATTACACCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
840 AAGCATTAC-CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
16163535 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCTATTTTTATGGCTTTTAAATTCA-ACAA
1 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * *
16163599 T-GTCCCTTAACCCTTCACGTGAAGTTTCGTGGCAAGACGACTTGTTTTCTATTTTTCATGATTT
66 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
** *
16163663 TTGAAACTTTTTTCATTTCGTGATTTTTTAAAATTTTTCCGGAAGGATTTTTGG-CCCTAAACTT
131 TCAAAACTTTTTT-ATTTCGGGATTTTTTAAAATTTTT-CGGAAGGATTTTTGGACCC-AAACTT
* * *
16163727 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAATTCGAAATGT
193 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
** * * *
16163792 ACAAGATTTTGTGACTGTTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACCGGTAGC
258 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
16163857 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTATCGAGGTTTGATGAGGGATAGG
323 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * *
16163922 GGGCCAATATAAGGGCCAAGTACCGGA-ACCCATCGCACATC-TTGTGCGCATAGCCCCCTCGGC
388 GGGCCAATATAAGGGCCAAGTACC-AACACCCATCGCACATCATTGTGCACACA-CCCCCT--GC
* * * * * *
16163985 CCCCCCGATCGCCGAAACCCCAATTCCGCCGGTTAGGTTCTCCGGCGATGCTCCAGCAATGGTGC
449 CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
*
16164050 CCCGACGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGG
514 CCCGACGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCGG
* * *
16164115 TCCGGTCCGATCTAAGATTGGGAATGAACTTCGCATGCTTAGACTAGGAATGAACTCCGTATC-C
579 TCCGGTCCGATCTAAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTA-CGC
* * * * *
16164179 CCAAGTCAACCCATGAAACGAGTGTGCGGGCACTCAACCGAGCAGAGGGGCGGGATGCACAAGTC
643 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGAGCAGAGGGGCGGGATGCGCAAG-C
* * * * * *
16164244 GGGGATCGACCGGGTCCCCCTCTGTGTGCTACCGATCCTGCTACCGCAACCCTCGATCTAGTCCG
707 TGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGATCTGGTCCG
* * *
16164309 ATCTTAGACTGGGAATGAACT-TCATATCCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
772 ATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGC
* * *
16164373 GGGC-A-C-TATGCCC-GTCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTG
836 GGGCAAGCAT-TACCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
16164434 GGTTTAGGCACATCTTCGTATTTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAA
1 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
16164499 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
66 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
16164557 GGAAGCAGTT
Statistics
Matches: 1709, Mismatches: 179, Indels: 62
0.88 0.09 0.03
Matches are distributed among these distances:
889 13 0.01
890 2 0.00
891 3 0.00
893 1 0.00
894 8 0.00
895 3 0.00
896 7 0.00
897 6 0.00
898 7 0.00
899 111 0.06
900 27 0.02
901 415 0.24
902 482 0.28
903 458 0.27
904 166 0.10
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
TCAAAACTTTTTTATTTCGGGATTTTTTAAAATTTTTCGGAAGGATTTTTGGACCCAAACTTGGT
AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATTGTGCACACACCCCCTGCCCCCCCG
ATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACG
AAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTC
CGATCTAAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCA
ACCCACGAAACGAGCGTGCGGGCGCTCAACCGAGCAGAGGGGCGGGATGCGCAAGCTGGGATCGG
CCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGATCTGGTCCGATCTTAGAC
TGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCAAGCAT
TACCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
Found at i:16165212 original size:146 final size:146
Alignment explanation
Indices: 16164965--16165229 Score: 336
Period size: 146 Copynumber: 1.8 Consensus size: 146
16164955 ACAACTCTCG
* * * *
16164965 GTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGTGTG
1 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGGG
* * * * * *
16165030 CGGGCGCTCAGCTGGCTAGAGGGGCAAGATGCGCAAGCCAGGGATCGACAGGGTCCCCTCTGCGT
66 CGGGCACTCAGCCGCCGAGAGAGACAAGATGCGCAAGCCAGGGATCGACAGGGTCCCCTCTGCGT
16165095 GCTGTCGTAACCCTCA
131 GCTGTCGTAACCCTCA
* * *
16165111 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGG
1 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGGG
** * * *
16165176 CGGGCACTACA-CCGACCGA-AGAGACGTGATGTGCAAGCCATGGATCGATAGGGT
66 CGGGCACT-CAGCCG-CCGAGAGAGACAAGATGCGCAAGCCAGGGATCGACAGGGT
16165230 GGTAGGTGGG
Statistics
Matches: 99, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
146 95 0.96
147 4 0.04
ACGTcount: A:0.25, C:0.26, G:0.31, T:0.19
Consensus pattern (146 bp):
GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGGG
CGGGCACTCAGCCGCCGAGAGAGACAAGATGCGCAAGCCAGGGATCGACAGGGTCCCCTCTGCGT
GCTGTCGTAACCCTCA
Found at i:16165597 original size:850 final size:856
Alignment explanation
Indices: 16164551--16167628 Score: 3724
Period size: 869 Copynumber: 3.5 Consensus size: 856
16164541 TCGTTTTCTA
*
16164551 TTTTTCGGAAGCAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * * *
16164616 CAAAAAAATTCAGCTAAAAACTCGAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
66 TAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCC
* * * *
16164681 ATGTCAAACACTTTAATGACTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * * *
16164746 GTGAGTTCTCGGGGTTTCATGAGGGATAGGGCGCCAATATAAGGGCCAAGTACTAGCACCCATCG
196 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCG
*
16164811 CACATCATGTGCGCACA-CCCCCCGGCCCCCCGTTCGTCGGAACCCCAATGCCGCCGATCAGGTT
261 CACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTT
** ** * * *
16164875 CTTTGGCAATGCTTCGACGATGGTGCCCCGTTGAAGAAAAATTCGGCACTAGCACATTACCGAGC
326 CTCCGGTGATGCTCCGACGATGGTGCCCCG-TGAAGAAAAATT-GGCACCAGCACATGACCGAGC
* * *
16164940 CCAGCATGTGCTGCCACAACTCTCGG-TCCGGTCTG-AT-CTTAGATTGGGAATGAACTCCGTAT
389 CCAGCATGTGCTGCCGCAACTCTCGGATCCGGTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* **
16165002 GCCTAAGTCAACCCAAGAAACGAGTGTGCGGGCGCTCAGCTGGCTAGAGGGGCAAGATGCGCAAG
454 GCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCTGGCTAGAGGGGCGGGATGCGCAAG
* *
16165067 CCAGGGATCGACAGGGT-CCCCTCTGCGTGCTG-T-CGTAACCCTCAGTCCGGTCTGATCTTAGA
519 CCGGGGATCGACAGGGTCCCCCTCTGCGTGCTGATCCGTAACCCTCGGTCCGGTCTGATCTTAGA
*
16165129 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-TGAGCGGGCGGGCACTACACCGACC
584 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGTGAGCGGGCGGGCACTACACCGGCC
* * * *
16165193 -GAAGAGACGTGATGTGCAAGCCATGGATCGATAGGGTGGTAGGTGGGCTTAGGCACATCATCAT
649 AG-AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG-TTAGGCACATCTTCAT
16165257 ATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
712 ATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
*
16165322 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGATTC
777 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTC
*
16165387 AAGATTTTTTAAAAT
842 GAGATTTTTTAAAAT
* * * ** *
16165402 TTCTTCGCAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGAT-AATGTATTTTTGTTTGCATGTG
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA--TG
** * *
16165466 CA-AAAA-AATGAAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCACTTGAAAAAAGTGTCC
64 CATAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG-CC
* *
16165529 CCC-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCGGTAAAATCTCAAATGCTTTTTAAGGG
128 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
16165593 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCA
193 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCA
*** ** * *
16165658 TCGCACATCATGTGCGCACAATCCCCCCCGGCCACCATAATCGTCGGAACCCCAATGCTACTGGT
258 TCGCACATCATGTGCGCAC-A-CCCCCCCGGCC-CCCCGATCGTCGGAACCCCAATGCCGCCGAT
* * *
16165723 CAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCAGTGAAGAAAAATGCGGCACCAGCACATGC
320 CAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCC-GTGAAGAAAAAT-TGGCACCAGCACATGA
*
16165788 CCGAGCCCAGCATGTGCTGCTGCAATCCTCGGTTCGGTCTGATCTTTGACTGAGAATGAACTCCG
383 CCGAGCCCAGCATGTGCTGCCGCAA--CTC---TC-G---GATC-----C---G---G---TCCG
* * * * *
16165853 TATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGTGTGCT
425 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCT
* * * * * *
16165918 CAGCCGG-TCAGAAGGGCGGGATGCACAAGCTGGGGATCGGCCGGGTCCCCCTTGCGTGCCACCG
490 CAGCTGGCT-AGAGGGGCGGGATGCGCAAGCCGGGGATCGACAGGGTCCCCC-T-C-TG----CG
* * * **
16165982 ATGCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTATACAAGGAATGAACTCCGTATGCCTAAG
547 -TGCTGAT-CCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* *
16166047 CCAACCGACGAAACGAGCAGGCGGACGGGCGGGTGGGCACTACTCCGGCCAGAGAGACGGGATGC
610 CCAACCGACGAAA-GTG-A----G-CGGGC----GGGCACTACACCGGCCAGAGAGACGGGATGC
* *
16166112 GCAAGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTACGTGCCAAT
664 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGG-TTAGGCACATCTTCATATTTCTACGTGCCAAT
*
16166177 GCCATTTTTATGGCTTGTAAATTCATACAATGG-CCGCTTAAGCCTTCACGTGAAGTTTCAAGGC
728 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCC-CTTAAGCCTTCACGTGAAGTTTCATGGC
*
16166241 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAT
792 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGAGATTTTTTAAAAT
* *
16166306 TTTTTCGGAAGGAGTTTTGGTCCCAAGCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
16166371 TAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGCCCCC
66 TAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCC
* *
16166436 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTGTTTAA-GGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
16166500 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCG
196 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCG
* * * * ** * * *
16166565 CACATCATGAGCCCAAACCCCCCTGGCCCCCCGATCACCGGAACCCCAATGCCGTCGGTTAGGTT
261 CACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTT
* * *** ** ** *
16166630 CTCCGGTGATGCTCCGACGATGATG-CCCGAG-CCCAGCA-TGTGCTGC--CACA--ACC---CT
326 CTCCGGTGATGCTCCGACGATGGTGCCCCGTGAAGAAAAATTG-GCACCAGCACATGACCGAGCC
* * * ** * **** * *
16166685 CAGTCTTGT-CCGATCTTAGA-T-TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAGCTTCG
390 CAG-CATGTGCTG-CCGCA-ACTCTCGG-ATCCGGTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * * *
16166747 TATGCGTAAGTCAAACCACA-AAACAAGCATGCGGGCGCTCAGCTGGCCAGAGGGGTGGGATGCG
451 TATGCCTAAGTCAACCCA-AGAAACGAGCGTGCGGGCGCTCAGCTGGCTAGAGGGGCGGGATGCG
* * * *
16166811 TAAGCCGGGGATCGACCA-GGTCCCCCTCTGCATGCTGTCGATCCTGCTACCACAACCCTTGGTT
515 CAAGCCGGGGATCGA-CAGGGTCCCCCTCTGCGTGC--T-GATCC-G-T-----AACCCTCGGTC
* * * *
16166875 CGATCTGATCTTAGACTGGGAATGAACTCCGTATGCGTAAGCCAACTGACGAAACGAGTGGGCGG
569 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--AGT----GA
**
16166940 GCGGGTTGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
627 GC--G--GGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* *
16167005 TAGGTGGGTATAGGCACATCTTCATATTTCTATGTGCCATTGCCATTTTTATGGCTTGTAAATTC
688 TAGGTGGGT-TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTC
16167070 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
752 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
*
16167135 TGATTTTTGAAACTTTTTACGTTTCGAGATTTTTTAAAAT
817 TGATTTTTGAAACTTTTTACGATTCGAGATTTTTTAAAAT
* *
16167175 TTTTTCGGAAGGAGTTTTGGTCCCAAGCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
16167240 TAAAACAATTCAGCTAAAAGCTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGCCCCC
66 TAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCC
16167305 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * *
16167370 GTGAGTTCTCGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATAG
196 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCG
*
16167435 CACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGATCAGGT
261 CACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGT
* * *
16167500 TCTCCGGTGATGCTCCGACGATGGTGTCCCGGTTAAGAAAAATGTGGCACCAGCACATGCCCGAG
325 TCTCCGGTGATGCTCCGACGATGGTG-CCCCGTGAAGAAAAAT-TGGCACCAGCACATGACCGAG
* * * *
16167565 GCCAGCATGTACTGCCGCAACCCTCGG-TTCGGTCCG-AT-CTTAGACTGGGAATGAAC-CCGTA
388 CCCAGCATGTGCTGCCGCAACTCTCGGATCCGGTCCGTATGCTTAGACTGGGAATGAACTCCGTA
16167626 TGC
453 TGC
16167629 TTAGACTGGG
Statistics
Matches: 1896, Mismatches: 217, Indels: 202
0.82 0.09 0.09
Matches are distributed among these distances:
850 198 0.10
851 47 0.02
852 4 0.00
853 10 0.01
854 98 0.05
855 1 0.00
856 3 0.00
859 2 0.00
860 4 0.00
861 1 0.00
862 3 0.00
863 4 0.00
864 2 0.00
865 2 0.00
866 1 0.00
867 1 0.00
868 97 0.05
869 455 0.24
870 93 0.05
871 61 0.03
872 2 0.00
873 6 0.00
874 2 0.00
875 5 0.00
876 2 0.00
877 11 0.01
878 20 0.01
879 7 0.00
880 95 0.05
881 11 0.01
882 11 0.01
883 1 0.00
884 3 0.00
885 1 0.00
888 2 0.00
889 6 0.00
890 7 0.00
891 5 0.00
892 64 0.03
893 2 0.00
894 1 0.00
895 5 0.00
896 1 0.00
897 3 0.00
898 2 0.00
899 3 0.00
900 8 0.00
901 50 0.03
902 10 0.01
903 7 0.00
904 336 0.18
905 120 0.06
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (856 bp):
TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
TAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCC
ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCG
CACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTT
CTCCGGTGATGCTCCGACGATGGTGCCCCGTGAAGAAAAATTGGCACCAGCACATGACCGAGCCC
AGCATGTGCTGCCGCAACTCTCGGATCCGGTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
CTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCTGGCTAGAGGGGCGGGATGCGCAAGCC
GGGGATCGACAGGGTCCCCCTCTGCGTGCTGATCCGTAACCCTCGGTCCGGTCTGATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGTGAGCGGGCGGGCACTACACCGGCCAG
AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTAGGCACATCTTCATATTT
CTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGAGA
TTTTTTAAAAT
Found at i:16166728 original size:26 final size:26
Alignment explanation
Indices: 16166699--16166751 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16166689 CTTGTCCGAT
*
16166699 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16166725 CTTAGACTGGGAATGAGCTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16166751 C
1 C
16166752 GTAAGTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16167637 original size:25 final size:26
Alignment explanation
Indices: 16167603--16167654 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
16167593 TCGGTCCGAT
*
16167603 CTTAGACTGGGAATGAAC-CCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16167628 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16167654 C
1 C
16167655 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16168139 original size:26 final size:26
Alignment explanation
Indices: 16168103--16168155 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16168093 GTTGACTTAG
* *
16168103 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCAATCCCAGTCTAA
16168129 GCATAAGGAGTTCAATCCCAGTCTAA
1 GCATAAGGAGTTCAATCCCAGTCTAA
16168155 G
1 G
16168156 ATCTGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCAATCCCAGTCTAA
Found at i:16169662 original size:26 final size:26
Alignment explanation
Indices: 16169631--16169683 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16169621 GTTGACTTAG
16169631 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16169657 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16169683 G
1 G
16169684 ATCAGACGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16170974 original size:900 final size:881
Alignment explanation
Indices: 16168929--16171463 Score: 3628
Period size: 887 Copynumber: 2.8 Consensus size: 881
16168919 TTAAGGGGAA
*
16168929 CGGGGGGGTGT-CGCACATGATGTTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
1 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
16168993 CCCTCATCAATCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
66 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
16169058 CAGTAGCCATTAAAGTGTCTGAAAGGGGGACATTTTTTTCAAATGGTTACAAAATCTTGTACACT
131 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
16169123 TTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
196 TCGAGTTTTTAGCTGAATTCTTTTGTGCATGCTAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * * *
16169188 TGGGGCCAAAACTCCTTCTGAAAAAATTTGAAAAAATCCCAAACCCCAAAAAGATTCAAAAATCG
261 TGGGGCCAAAA-TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC-AAAATCA
*
16169253 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTAT
324 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
**
16169318 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACAAACCTA
389 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
16169383 CCACCCTATCGATCCACGGCTTGTGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC
454 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT---CGCCCGCCCGC
* * * *
16169448 CCGCTCGTTTCGTCGGTTGGCTTAGTCATACAGAGTTCATTCCCAGTCTAAGACCAGATCGGGCT
516 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACC
* * *
16169513 GAGGGTTG-AGGCAGTAGGATCGACAGCAGGCA-AAGGGGACCCGGTCGATCCCCGGATTACGCA
581 GAGGGTTGCA-GCAGCAGGATCG-CAGCACGCAGAAGGGGACCCGATCGATCCCCGGATTACGCA
*
16169576 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGAACGCTCATTTCATT-GGTTGACTTAGGCATACGGA
644 TCCCGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTCATTTC-TTGGGTTGACTTAGGCATACGGA
* * ** * *
16169640 GTTCATTCCCAGTCTAAGCATACGGAGTTCTTTCCCAGTCTAAGATCAGACGGGGCCGAGGGTTG
707 GTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTA
* *
16169705 CAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGC
772 CAGCAGCACATGCTGGGCTCAGGCATGTGCTGCTGCCGCATTTCTCTTCGCCGGGGCACCATCGC
* * * * *
16169770 CGGAGAACCTGACCGGTGGCTTTGGGGTTCCGTCGATCGGGGGGC
837 CGGAGAACCTAACCAGCGGCATTGGGGTTCCGGCGATCGGGGGGC
* *
16169815 CGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCCTAT
1 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * *
16169880 CCCTCACCAAACCTCTAGAGCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAC
66 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
16169945 CCGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
131 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
16170010 TCGAGTTTTTAGCTGAATTCTTTTGGGCATGCTAACAAAAATACAAGGATCACGTCTGCCAAGTT
196 TCGAGTTTTTAGCTGAATTCTTTTGTGCATGCTAACAAAAATACAAGGATCACGTCTACCAAGTT
**
16170075 TGGCACCAAAATGCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAATTTC
261 TGGGGCCAAAAT-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA--TC
*
16170140 -TAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
323 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
16170204 TGAATTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCT
388 TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
16170269 ACCACCCTATTGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT-GCCCGCCCGCCT
453 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCCC
* * *
16170333 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGA
518 GCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGA
* * * * * * * *
16170398 GGGTTGCAGCAGCAAGATCTGCAGCACACAGAGGGGGACCCGACCGATCCCTGGGTTGCGTATCC
583 GGGTTGCAGCAGCAGGATC-GCAGCACGCAGAAGGGGACCCGATCGATCCCCGGATTACGCATCC
* *
16170463 CACCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCTTGGGTTGACTTAGGCATACGGAGTTC
647 CGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTCATTTCTTGGGTTGACTTAGGCATACGGAGTTC
* * * * * *
16170528 ATTCCTAGTCTAATCATATGAAGTTCATTCGCAGTCTAAGATCGGACCAGACCGAGGGTTACGGC
711 ATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGC
* *
16170593 AGCACATGCTGGGCTCGGGCATGTGCTGCTGCCGCATTTCTCTTCGTCGGGGCACCATCGCTAGA
776 AGCACATGCTGGGCTCAGGCATGTGCTGCTGCCGCATTTCTCTTCGCCGGGGCACCAT--C----
*
16170658 GCATCGTCGGAGAACCTAACCAGCGGCATTGGGGTTTCGGCGATCGGGGGGGC
835 G---C--CGGAGAACCTAACCAGCGGCATTGGGGTTCCGGCGATC-GGGGGGC
* *
16170711 CGGGGAGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTAGCCCTTATATTGGCCCC
1 C--GG-GGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
16170776 CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTG
62 CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
16170841 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
127 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
*
16170906 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCTAACAAAAATACAAGGATCACGTCTACCA
192 CACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCTAACAAAAATACAAGGATCACGTCTACCA
* * *
16170971 AGTTTGGGGCCAAAACCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTGGAAAA
257 AGTTTGGGGCCAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT-CAAAA
*
16171036 TCATGAAAAATAGAAAACGAGTCGTTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
321 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
** * *
16171101 TATGAATTTACCTGCCATAAAAATGGCATTGGCCCGTAGAAATGTGAAGATGTGCCTAAACCCAC
386 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
* * * *
16171166 CTACCACCCTATCGATCCACGACTTGCGTATCCTGTCTCTCTGGCCGGTGTAGTGCCTGGTCGCC
451 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA-------GTCGCC
* * *
16171231 CGCCCGCCCGCTCTTTTCATCTGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
509 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * *
16171296 -CTGGACCAAGGGTTGCGGCAACAGGATCAACAGCATGCAGAAGGGGACCTGATCGATCCCCGGC
574 TC-GGACCGAGGGTTGCAGCAGCAGGATC-GCAGCACGCAGAAGGGGACCCGATCGATCCCCGGA
* * * *
16171360 TTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCTGCATGCTCATTTCATGGGTTGACATAGGCA
637 TTACGCATCCCGCCCCTCTGGCCG-CTGAGCGCCCGCACGCTCATTTCTTGGGTTGACTTAGGCA
16171425 TACGGAGTTCATTCCCAGTCTAAGCATAC-AGAGTTCATT
701 TACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATT
16171464 TCATCGGAGC
Statistics
Matches: 1467, Mismatches: 145, Indels: 53
0.88 0.09 0.03
Matches are distributed among these distances:
883 93 0.06
884 194 0.13
886 17 0.01
887 448 0.31
888 2 0.00
890 1 0.00
893 1 0.00
895 32 0.02
896 8 0.01
898 4 0.00
899 212 0.14
900 251 0.17
906 5 0.00
907 199 0.14
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (881 bp):
CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTCTTTTGTGCATGCTAACAAAAATACAAGGATCACGTCTACCAAGTT
TGGGGCCAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAATCATG
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCCCGCT
CGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGG
TTGCAGCAGCAGGATCGCAGCACGCAGAAGGGGACCCGATCGATCCCCGGATTACGCATCCCGCC
CCTCTGGCCGCTGAGCGCCCGCACGCTCATTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCC
CAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGCAGCAC
ATGCTGGGCTCAGGCATGTGCTGCTGCCGCATTTCTCTTCGCCGGGGCACCATCGCCGGAGAACC
TAACCAGCGGCATTGGGGTTCCGGCGATCGGGGGGC
Found at i:16172270 original size:26 final size:26
Alignment explanation
Indices: 16172241--16172293 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16172231 GTTGACTTAG
* *
16172241 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16172267 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16172293 G
1 G
16172294 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16173992 original size:26 final size:26
Alignment explanation
Indices: 16173963--16174015 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16173953 GTTGACTTAG
* *
16173963 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16173989 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16174015 G
1 G
16174016 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16175697 original size:26 final size:26
Alignment explanation
Indices: 16175668--16175717 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
16175658 GACTTAGGCA
16175668 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
16175694 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
16175718 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:16176526 original size:906 final size:903
Alignment explanation
Indices: 16174907--16177006 Score: 3164
Period size: 906 Copynumber: 2.3 Consensus size: 903
16174897 ATTGGGGCAC
* ** *
16174907 CATCACCGGAGAACCTGACCGACGGTATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGC
1 CATCATCGGAGAACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGC
16174972 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
66 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
16175037 GAGAACTCACACCCCCTTAAAGAGC-TTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
131 GAGAACTCACACCCCCTTAAAGAGCATTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* **
16175101 GTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTCATACACTTTGAGTTTTTAGCT
196 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT
* *
16175166 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACAC
261 GAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACAC
* * * *
16175231 CTTCCGAAAAAATTTAAAAAAATCCCCAACCACAAAAAGTTTTGAAAATTGTGAAAAATAGAAAA
326 CTTCCAAAAAAATTTAAAAAAATCCCCAACAACAAAAAGTTTTGAAAATCGTGAAAAATAAAAAA
*
16175296 CGAGTCATCTTGCCATGAAACTTCACCTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCA
391 CGAGTCATCTTGCCATGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* ** * *
16175361 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
456 TAAAAATGGCATTGGAACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATC
***
16175426 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCTGCCCGCCCGCCCGCTCGTTT
521 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCAACCGCCCGCCCGCTCGTTT
* * * **
16175491 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTG
586 AGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCA
** * * * *
16175556 GCAGCAAGATCGACTGCACGCAGTGGGGGACCCGGCCGATCCATGGCTTCCGCATCCTGCCCCTC
651 GCAGCAAGATCGACAACACGCAGAGGGGGACCCGGCCAATCCACGGCTTCCGCATCCCGCCCCTC
* *
16175621 TGGCTGGCTG-AGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
716 TGGCTGGCTGCA-CACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTAATTCCCA
* * * * * * *
16175685 GTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCACAT
780 ATCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGAACCGGACCAAGGGTTGCGACAGCACAT
* * *
16175750 GCTGGGCTCGGGCATGCGTTGGTGC-CACATTTTTCTTTGTCGGGGCACCATTACCGGAG
845 GCTGGGCTCGGGCATGCGTTGGTGCAC-CATTTTTCTTCGTCCGGGCACCATCACCGGAG
* *
16175809 CATCGA-CGGAGAACCTGACCGACGACATTGGTGTTCCGGCAATCGAGGGTGGCCGGGGGGGGTG
1 CATC-ATCGGAGAACCTGACCGACGACATTGGGGTTCCGGCGATCG-GGG-GGCC--GGGGGGTG
*
16175873 TGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
61 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
**
16175938 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTTTTGATTTTACAGGTTTGCTGCCAGTAGCCA
126 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* **
16176003 TTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTT
191 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTT
* *
16176068 TAGCTGAAATTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
256 TAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
** * * *
16176133 AACTTCTTTCAAAAAAATTTTAAAAAATCGCCAACAACAAAAA-TTTTGAAAATCGTGAAAAATA
321 AACACCTTCCAAAAAAATTTAAAAAAATCCCCAACAACAAAAAGTTTTGAAAATCGTGAAAAATA
*
16176197 AAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
386 AAAAACGAGTCATCTTGCCATGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACA
16176262 AGCCATAAAAATGGCATTGGAACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAC
451 AGCCATAAAAATGGCATTGGAACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAC
* * *
16176327 CGATCCACGGCTTGCGTATCCCGTCTCTCTGGCCGACG-ATGTGCCCGCCCAACCGCCCGCTCGC
516 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA-GTGCCCACCCAACCGCCCGCCCGC
* *
16176391 TCGTTTAGTCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGG
580 TCGTTTAGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGG
* * *
16176456 GTTGCAGCAGCAGGATCGACAACACGCAGAGGGGGA-CCGAGCCAATCCCCGGCTTGCGCATCCC
645 GTTGCAGCAGCAAGATCGACAACACGCAGAGGGGGACCCG-GCCAATCCACGGCTTCCGCATCCC
* *
16176520 GCCCCTCTGGGTGGCTGCACACTCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTAA
709 GCCCCTCTGGCTGGCTGCACACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTAA
* **
16176585 TTCCCAATCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGAACTGGACCAAGGGTTGCGGTA
774 TTCCCAATCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGAACCGGACCAAGGGTTGCGACA
* * * *
16176650 GCACATGCTGGGCTCGGGTATGTGTTGGTGTACCATTTTTCTTCGTCCGGGCACCATCATCGGAG
839 GCACATGCTGGGCTCGGGCATGCGTTGGTGCACCATTTTTCTTCGTCCGGGCACCATCACCGGAG
* * * ** *
16176715 CATCATC-CAGAACCTGACTGGCGACATTGGGGTTTTGGCGATCGGGGGGGCCAGGGGGTGTGCG
1 CATCATCGGAGAACCTGACCGACGACATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCG
* * *
16176779 CACATGATGTCCGTTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCT
65 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
** * * *
16176844 CGAGAACTCACACCCATTTAAAGAGCATTTTGAGATTTTATAGG-TTGCT-ACTGTAGCCATTAA
130 CGAGAACTCACACCCCCTTAAAGAGCATTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
16176907 A-TGTCTGGAATGGGGACAACTTTTTT-AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG
195 AGTGTCTGAAATGGGGAC-ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG
16176970 CTG-AATTTGTTTGTGCATGCCAACAAAAATACAAGGA
259 CTGAAATTT-TTTGTGCATGCCAACAAAAATACAAGGA
16177007 CCATCGCCGT
Statistics
Matches: 1082, Mismatches: 102, Indels: 31
0.89 0.08 0.03
Matches are distributed among these distances:
898 5 0.00
899 78 0.07
900 21 0.02
901 5 0.00
902 149 0.14
903 4 0.00
904 8 0.01
905 37 0.03
906 585 0.54
907 190 0.18
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
CATCATCGGAGAACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGC
ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT
GAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACAC
CTTCCAAAAAAATTTAAAAAAATCCCCAACAACAAAAAGTTTTGAAAATCGTGAAAAATAAAAAA
CGAGTCATCTTGCCATGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGAACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATC
CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCAACCGCCCGCCCGCTCGTTT
AGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCA
GCAGCAAGATCGACAACACGCAGAGGGGGACCCGGCCAATCCACGGCTTCCGCATCCCGCCCCTC
TGGCTGGCTGCACACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTAATTCCCAA
TCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGAACCGGACCAAGGGTTGCGACAGCACATG
CTGGGCTCGGGCATGCGTTGGTGCACCATTTTTCTTCGTCCGGGCACCATCACCGGAG
Found at i:16176600 original size:26 final size:26
Alignment explanation
Indices: 16176571--16176623 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16176561 GTTGACTTAG
16176571 GCATAC-GAAGTTAATTCCCAATCTAA
1 GCATACAG-AGTTAATTCCCAATCTAA
*
16176597 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTAATTCCCAATCTAA
16176623 G
1 G
16176624 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAATCTAA
Found at i:16178711 original size:26 final size:26
Alignment explanation
Indices: 16178673--16178723 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
16178663 GTTGACTTAG
16178673 GCATACGGAGTTCATACCCAATCTAA
1 GCATACGGAGTTCATACCCAATCTAA
** * *
16178699 GCATACGTTGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATACCCAATCTA
16178724 TGATTAGACC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAATCTAA
Found at i:16181348 original size:26 final size:26
Alignment explanation
Indices: 16181312--16181364 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16181302 GTTGACTTAG
16181312 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16181338 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16181364 G
1 G
16181365 ATTGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16182234 original size:26 final size:26
Alignment explanation
Indices: 16182198--16182248 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
16182188 TGACTTAGGC
16182198 ATACGGAGTTCATTCCCAGTCTAAGT
1 ATACGGAGTTCATTCCCAGTCTAAGT
16182224 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
16182249 ATCGATCAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:16183123 original size:26 final size:26
Alignment explanation
Indices: 16183093--16183145 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16183083 GTTGACTTAG
16183093 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
16183119 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16183145 G
1 G
16183146 ATCGGACAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16184514 original size:716 final size:719
Alignment explanation
Indices: 16183119--16184593 Score: 2325
Period size: 716 Copynumber: 2.1 Consensus size: 719
16183109 CCCAGTCTAA
* * * * *
16183119 GCATATGGAGTTCATTCCCAGTGTAAGATCGGA-CAAGATCAAGGGTTGTGGCAGCACATGCTAG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGACCGA-ACCAAGGGTTGTGACAGCACATGCTAG
* *
16183183 GCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
64 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * *
16183248 AACCTGACCGGCGGCTTTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATTT
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
16183313 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATAAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTCGAGAACTCA
* *
16183378 CACCCCCTTAAAGTGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTTAGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCAAGTAGCCATTAAAGTGTTAGAAA
* *
16183443 TGGGGACACTTTTTTCAAATGGTCACAAATTCTTGTACACTTCAATTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
* * * *
16183508 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAGGATTGGGGCCGAAACTCCTTCCGAAAA
389 GTGCATGCCAAAAAAAATACAAGAATCACATCTACCAGGATTGGGGCCAAAACTACTTCCGAAAA
* *
16183573 AATTTTAAAAAATCCCGAACCGCTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAATGAGTCGTC
454 AATTTTAAAAAATCCCGAACCGCTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTC
*
16183638 TTGCCATGAAACTTCACGTGAAGGCTTAAATGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
16183703 CATTGGCATACAGAAATATGAAGATGTGCCCAAACCCACCTACAACCCTATCGATCTACGGCTTG
584 CATTGGCATACAGAAATATGAAGATGTGCCCAAACACACCTACAACCCTATCGATCCACGGCTTG
* * * *
16183768 CGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCCTGCTCTTTTCGTCGATTG
649 CACATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCACCCGCTCATTTCGTCGATTG
16183833 GCTTAG
714 GCTTAG
* * *
16183839 GCATACGGAATTCATTCTCAGTCTAAGATCGGACCGAACCAAGGGTT-TCGACAGCACATGTTGG
1 GCATACGGAGTTCATTC-CAGTCTAAGATCGGACCGAACCAAGGGTTGT-GACAGCACATGCTAG
**
16183903 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTTGGAG
64 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
16183968 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGT
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
16184032 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTCGAGAACTCA
* * *
16184097 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTAAGTAGCCATTAAAGTGTTTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCAAGTAGCCATTAAAGTGTTAGAAA
* *
16184161 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
* * * *
16184226 GTGCATGCCAACAAAAATACAAGAATCACATCTACCAAGG-TT-GGGCCAAAATTATTTTCGAAA
389 GTGCATGCCAAAAAAAATACAAGAATCACATCTACC-AGGATTGGGGCCAAAACTACTTCCGAAA
* * *
16184289 AAATTTTAAAAAATCCTGAACCGC-AAAAAGTTTCTAAAATCATGAAAAATAGAAAACGAGTCGT
453 AAATTTTAAAAAATCCCGAACCGCTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGT
*
16184353 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
16184418 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCATGGCTT
583 GCATTGGCATACAGAAATATGAAGATGTGCCCAAACACACCTACAACCCTATCGATCCACGGCTT
*** * *
16184483 GCACATCCCGTCTCTCTGGCCGGGGTAGTGCCTGCCCGCCCGCCCACCCGCTCATTTCGTCGGTT
648 GCACATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCACCCGCTCATTTCGTCGATT
16184548 GGCTTAG
713 GGCTTAG
*
16184555 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGAAC
1 GCATACGGAGTTCATTCC-AGTCTAAGATCGGACCGAAC
16184594 TGAAGGTTGC
Statistics
Matches: 691, Mismatches: 59, Indels: 14
0.90 0.08 0.02
Matches are distributed among these distances:
715 1 0.00
716 256 0.37
717 39 0.06
718 153 0.22
719 90 0.13
720 150 0.22
721 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (719 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGACCGAACCAAGGGTTGTGACAGCACATGCTAGGC
TCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCAAGTAGCCATTAAAGTGTTAGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGAATCACATCTACCAGGATTGGGGCCAAAACTACTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGCTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATACAGAAATATGAAGATGTGCCCAAACACACCTACAACCCTATCGATCCACGGCTTGCA
CATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCACCCGCTCATTTCGTCGATTGGC
TTAG
Found at i:16184749 original size:26 final size:26
Alignment explanation
Indices: 16184713--16184764 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16184703 GTTGACTTAG
*
16184713 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16184739 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16184765 TATCCGACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.