Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 103 of 190
Found at i:16186356 original size:26 final size:26
Alignment explanation
Indices: 16186320--16186371 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16186310 GTTGACTTAG
*
16186320 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16186346 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16186372 TATCCGACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16187261 original size:26 final size:26
Alignment explanation
Indices: 16187210--16187262 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16187200 GTTGACTTAG
*
16187210 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
* *
16187236 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
16187262 G
1 G
16187263 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAACCTAA
Found at i:16188137 original size:26 final size:26
Alignment explanation
Indices: 16188101--16188152 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16188091 GTTGACTTAG
*
16188101 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16188127 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16188153 TATCCGACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16188811 original size:12 final size:12
Alignment explanation
Indices: 16188794--16188819 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
16188784 CGGCGTAGTC
16188794 CCCGCCTGCCCG
1 CCCGCCTGCCCG
16188806 CCCGCCTGCCCG
1 CCCGCCTGCCCG
16188818 CC
1 CC
16188820 TGCTCATTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.69, G:0.23, T:0.08
Consensus pattern (12 bp):
CCCGCCTGCCCG
Found at i:16189895 original size:26 final size:26
Alignment explanation
Indices: 16189865--16189917 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16189855 GTTGACATAG
16189865 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16189891 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16189917 G
1 G
16189918 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16190793 original size:26 final size:26
Alignment explanation
Indices: 16190763--16190815 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16190753 GTTGACTTAG
*
16190763 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
* * *
16190789 GCATATGGAGTTCATTCCAAGTTTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
16190815 G
1 G
16190816 ATCGAATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:16191694 original size:26 final size:26
Alignment explanation
Indices: 16191664--16191716 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16191654 GTTGACTTAG
16191664 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
16191690 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16191716 G
1 G
16191717 ATGGATCGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16194328 original size:26 final size:26
Alignment explanation
Indices: 16194299--16194351 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16194289 GTTGACTTAG
*
16194299 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16194325 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16194351 G
1 G
16194352 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16198740 original size:26 final size:26
Alignment explanation
Indices: 16198711--16198763 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16198701 GTTGACTTAG
16198711 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16198737 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16198763 G
1 G
16198764 ATCGCATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16199038 original size:884 final size:885
Alignment explanation
Indices: 16194425--16205935 Score: 9718
Period size: 884 Copynumber: 12.8 Consensus size: 885
16194415 TTCTTTGTCA
* *
16194425 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATAGAGGGGGCCA-GGGGGTGTGCGCACATGA
1 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGA
16194489 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * *
16194554 TCACACCCCCTTAAAGAGCGTTTGAGATTTAACAGGTTTGCTGCCAGTAGGCATTGAAGTGTCTG
131 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
16194619 AAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
196 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGT
* *
16194684 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGGCCAAAACTCATTCTG
261 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCCG
* ** * *
16194749 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAAAAAACCAGTC
325 AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTG--------AAAA-GAGTC
* *
16194814 GTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAA
381 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** *
16194879 TGGCATTGGCACCCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGC
446 TGGCATTGGCACTAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
16194944 TTACGCATCCCGCCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCTCCCGCTCGTTTCATCGG
511 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CCCGCCCG--C-CCC-CTCGTTTCGTCGG
* * * ** * *
16195009 TTGGCTTAGGCATACGGAATTCATTCCC-GATCTAAGATCGGACTGAATTGAGGGTTGTGGCAGC
569 TTGGCTTAGGCATACGGAGTTCATTCCCAG-TCTAAGATCAGACTGGACCGAGGGTTGCGGCAGA
* * * * * * *
16195073 AGGATCGACAGCATGTGGAGAGGGA-GCTAGCCGATCCTC-AGCTTGCGCATCCCACCCCTCTGG
633 AGGATCGACAGCACGTAGAGGGGGACCCGA-CCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGG
* * * *
16195136 CCGACTGAGCACCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
696 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * *
16195201 AAGCATACAAAGTTCATTCCCAGTGTAAGATCAGATCAGACCG-GGGTTGCGACAGCACATGCTG
761 AAGCATACGAAGTTCATTCCCAGTCTAAGATC-GATCAGA-CGAGGGTTGCGGCAGCACATGCTG
* * ** * * *
16195265 GGCTGGGGCATGTGCTGGTGCCGCGTTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCA
824 GGCT-CGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCG
* * * *
16195328 GAGAACCTGACCGGCGACGTTGGGGTTCCGGCGATCGGGGGGGCCA-AGGGGTGTGCGCACATGA
1 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGA
* *
16195392 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTCCAACAA
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-CGAGAA
* * *
16195456 CTCACACCCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTCCTGTCAGTAGCCATTAAAGTGTC
130 CTCACACCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
16195521 TGAATTGGGGACA-TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAATTTTTAGCTGAATT
194 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * ** **
16195585 TTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGCATGGGGCCAAAACTCGATCC
259 GTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* **
16195650 GAAAAAATTTTAAAAAATCTTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
324 GAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC--G-----T-GAAAA-GAGT
* * *
16195715 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCACTGTATGAATTTAAAAGCCATAAAA
380 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
16195780 ATGACATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACG
445 ATGGCATTGGCACT-AAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
16195844 GCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTG-CCCGCCCGCCCGTCGCTCATTTCATCGGTT
509 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCGCCCGCCC--C-CTCGTTTCGTCGGTT
* ** * * *
16195908 GGCTTAGGCATACGGAGTTCATT-CCAGTCTATGATTGGAC-GAGACCGAGGATTGCGACAGCAG
571 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTG-GACCGAGGGTTGCGGCAGAAG
* * ** * * * *
16195971 GATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGTGCATCTCGCCCCTCTTGTCGG
635 GATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
16196036 TTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA-C
700 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
*
16196100 AT-C--A----A-----A-TC----A--GAT----CGAGGGTTGCGGCAGCACATGCTGGACTCA
765 ATACGAAGTTCATTCCCAGTCTAAGATCGATCAGACGAGGGTTGCGGCAGCACATGCTGGGCTC-
* * * * * * *
16196142 GGAATATGCTGGTGCCACATTTTTCTT-TTCGAGGCACCATCGTCAGAGGATCATCG
829 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCG
*
16196198 GAGAACCTGACCGGCGGTATTGGGGTTCCGACGATCGGGGGGGCCA-GGGGGTGTGCGCACATGA
1 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGA
16196262 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA-CCCTCATCAAACCTCGAGAAC
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
16196326 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGTCATTAAAGTGTCTA
131 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
16196391 AAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-T
196 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGT
* * * *
16196455 TTTTTAGCATGCCAA-AAAAA-AAAAGGGATCACGTCTACCTAGTTTGGGGCCAAAACTCCTTTC
261 TTTGT-GCATGCCAACAAAAATACAA-GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * *
16196518 GAGAAAATTTTAAAAAATCTC-AGACC-TCGAAAAGTTTCAAAAATTGTGAAAAATAAAAAACGA
324 GAAAAAATTTTAAAAAATCTCGA-ACCGT-AAAAAGTTTCAAAAATCGTG--------AAAA-GA
*
16196581 GTCGTCTTGCCATGAAACATCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAA
378 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
** *
16196645 AAATGGTGTTGGCAC-ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCA
443 AAATGGCATTGGCACTA-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* ** *
16196709 CGGCTTGTGCATCCCGTCTCTCT-GCCGACGTAGTG-TTCGCCCGCCCGCTCGTTTCGTCGGTTG
507 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCGCCCGCCCCCTCGTTTCGTCGGTTG
* * * *
16196772 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGTAGTAGGA
572 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGAAGGA
* * * * * * * *
16196837 TCGACAGCACGCAGAGGGGGACCCGATCGATCCTC-AGCTTGCGC--GCAG-CACGCAGAG--GG
637 TCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGA-CTTGCGCATCCCGCCCCTCTG-GCCGG
* * * * *
16196896 --G-G-ACCCGAACGATCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTATAAGC
700 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * *
16196957 ATACAAAGTTCATTCCCAGTTTAAGATCAGATCAGACTGAGGGTTGCGGTAGCACATGCTGGACT
765 ATACGAAGTTCATTCCCAGTCTAAGATC-GATCAGAC-GAGGGTTGCGGCAGCACATGCTGGGCT
* * * * *
16197022 AGGGAATGTGCTGATGCAGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCATCG
828 -CGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCG
* * * *
16197081 GAGAACTTGGCCGGTGGCATTGGGGTTCCGACTATC-GGGGGGCTCGGAGGGGGGTGTGCGCACA
1 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC-C--AGGGGGGTGTGCGCACA
* * * *
16197145 TGATGTGTGATGGGTGCGGGTACTTCGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAG
63 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
16197210 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
128 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
16197275 CTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTAAAT
193 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* ** * **
16197340 TGTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGCATGGGGCCAAAAGTCGATC
258 TGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
*
16197405 CGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
323 CGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC--G-----T-GAAAA-GAG
* * **
16197470 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTACGAGTGATAAA
379 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
16197535 AATGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGGTCCAT
444 AATGGCATTGGCACT-AAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * * *
16197599 GGCTTGTGCATCCCGTCTCTCTGGCCGGCATAATG-CCCGCCCGCCCACTCGTTTCATCGATTGG
508 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCGCCCGCCCCCTCGTTTCGTCGGTTGG
* * ** * * *
16197663 CTTAGGCATACAGAGTTCATTCACAGTCTAAGATTGGACTAGATCGAGGGTTGTGGCAGCAA-GA
573 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAG-AAGGA
* * * * ** *
16197727 TCGACAGCACGCAGAAGGGGACCCAACCGATACCC-AGCTTGCGCATCCCGCCTTTCTGGCTGGC
637 TCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
16197791 TGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGTCATACGGTGTTCATTCCCAGTCTACGCA
701 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * *
16197856 TACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAAGGTTACGGCAGCACATGCTGGGCTC
766 TACGAAGTTCATTCCCAGTCTAAGATC-GATCAGAC-GAGGGTTGCGGCAGCACATGCTGGGCTC
* * * *
16197921 GGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGTGCACCATCGTCGGAGCATCGTCG
829 -GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCG
* *
16197979 GAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGTC-GGGGGGTGTGCGCACATGA
1 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGA
* ** *
16198043 TGTGCAATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCAT-GAGCA
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAA
* *
16198107 CTCACACCCCCCTTAAAAAGCATTTGAGATTTTACATGTTTGCTGCCAGTAGCCATTAAAGTGTC
130 CTCACA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
16198172 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTGGTACACTTCGAGTTTTTAGCCGAATT
194 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
*
16198237 GTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAAACTCCTTCC
259 GTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* *
16198302 AAAAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA-A-TCGTCTTGCC
324 GAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAGAGTCGTCTTGCC
*
16198365 ATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
389 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * * * * *
16198430 GCACTAAGAAATACGAGGATGTACCCAAACCTACCTGCCACCCTTTCGATCCACAGCTTGCGCAT
454 GCACTAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
16198495 CCCATCTCTCTGCCCGACGTAGTGCCCCGCCCGCCCCCTCGTTTTGTTGGTTGGCTTAGGCATA-
519 CCCGTCTCTCTGGCCGACGTAGTGCCCCGCCCGCCCCCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * * *
16198559 TGAGGTCATTCCCAGTCTAAGATCAGACTGGATCAAGTGTTACGGCAGAAGGATCGCCAGCACAT
584 GGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGAAGGATCGACAGCACGT
** * * * *
16198624 AGAGGGCAACCAGACCGATCCCCGACTTGCACATCCCGCCCTTCTGG-TGGCTGAGCGCCCGCAC
649 AGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
16198688 GCTCG-TTCTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
714 GCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
* *
16198752 TCCCAGTCTAAGATCGCATCAGATCGAGGGTTGCGGTAGCACATGTTGGGCTCAGGCATGTGCTG
778 TCCCAGTCTAAGATCG-ATCAGA-CGAGGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTG
* * *
16198817 GTGCCGCATTTTTCTTTGTCGGGGCACCATCGTCAGAGCATCAACG
840 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCG
* * **
16198863 GAGAACCTGATCAGCGGCATTGGGGTTCCGGTGAAT-GGGGGGGCCAGGCGGGGTGTGCGCACAT
1 GAGAACCTGACCGGCGGCATTGGGGTTCCGACG-ATCGGGGGGGCCAGG-GGGGTGTGCGCACAT
* * *
16198927 GATGTGTGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
64 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
16198992 ACTCACA-CCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
129 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
16199056 TAAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
194 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * *
16199121 TTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGCTTGGGGCCAAAACACCTTTC
259 GTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * ** *
16199186 GAAAAAATTTTAAAAAATCTCGAACTGCAAAAA-TTTTTAAAATTGTGAAAAATAAAAAATGAGT
324 GAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTG--------AAAA-GAGT
*
16199250 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAA
380 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
16199315 ATGGCATTGGCAC-ATAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACG
445 ATGGCATTGGCACTA-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
16199379 GCTTGCGCATCCCGTCTCCCTGGCCGACTTTGTACCCGCCCGCCCGCCTGTCCGCTTGTTTCGTC
509 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT--GC-CCCGCCCGCC---CC-CTCGTTTCGTC
* * *
16199444 GGTTGGCTTAGGCGTACAGAGTTCATTCCCTA-TCTAAGATCGGACT--A--GA----T-C-G-A
567 GGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACTGGACCGAGGGTTGCGGCA
*
16199497 G--GG-T----------T--A---CG-CCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGG
631 GAAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGG
* *
16199543 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCT
696 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * *
16199608 AAG-AT-C--AG---A----C---C---G---GAT----CGAGGGTTACGGTAGCATATTCTGGG
761 AAGCATACGAAGTTCATTCCCAGTCTAAGATCGATCAGACGAGGGTTGCGGCAGCACATGCTGGG
** * * ** * *
16199649 CTCGAGCATGTGCTGGTGCCAAATTTTTCTTCTTCGGGGCATCATCACCGGAGTATCGTCG
826 CTCG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCG
* * * * * * **
16199710 GAGAACCTAACCGACGGCATTGGGGTTCCGGCGATCAGAGGGGCCAGGGGGGTGTGTGCATTTGA
1 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGA
* * *
16199775 TGTGAGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAAC
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
16199840 TCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
131 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * *
16199905 AAATGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCAGAATTTT
196 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGT
*
16199970 TTTGTGCATAG-CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCG
261 TTTGTGCAT-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* ** *
16200034 AAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGGGTC
325 AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC--G-----T-GAAAA-GAGTC
* *
16200099 GTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAA
381 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
16200164 TGGCATTGGCA-TGCAA-AAATATGAAGATGTACCTAAACCCACCAACCACCCTATCGATCCACG
446 TGGCATTGGCACT--AAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
16200227 GCTTGCGCGTCCCGTCTCTCTGGTCGACGTAGTGCCACCCTCCCACCCGCCCGTTCGTTTCGTCG
509 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-C-CCCGCCC-GCC-CCC--TCGTTTCGTCG
* * * ** *
16200292 GTTGGCTTAGGCATACTGAGTTCATTCCAATTCTAAGATCAGA-TCAAACTGAGGGTTGCGGCAG
568 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCGGCAG
* * * *
16200356 TAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGCCTTGCGCTTCCCGCCCCTCTGGC
632 AAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGC
* * * *
16200421 CGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
697 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
*
16200486 AG-AT-CG--G---A---CC-G-----GA-C---C--A--AGGGTTGCGGCAGCAGATGCTGGGC
762 AGCATACGAAGTTCATTCCCAGTCTAAGATCGATCAGACGAGGGTTGCGGCAGCACATGCTGGGC
* * * * *
16200527 TCGAGCATTTGCTGGTGCCACATTTTTCTTCGT-GGGTTG-ACTTAGGCATACGGAGTTCATTCC
827 TCG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG--GCAC-CA-TCGT-CGGAG--CA-T--
16200590 CAATC-
881 C-ATCG
* * * * ** ***** * * **** * * * *
16200595 TA-AGCAT-ACAGAG-TTCATTCCCAAT-CTAAGATCAGACCAGACC-GAGGGTTGCAGCAGCAC
1 GAGAACCTGACCG-GCGGCATTGGGGTTCCGACGATC-GGGGGGGCCAGGGGGGTG-TGC-GCAC
** * *** *** ** * * * *
16200655 ATTCTGGGCTCGGGAATGTGCTGGTGCCACATT-TTTCTTCAT-CGGGGCACC-AT-CGTCGGAG
62 ATGATGTGCGATGG---GTGCTGGT---AC-TTGGCCCTT-ATATTGGCCCCCTATCCCTC--AT
** * * ** * *** * ** * ******** *
16200716 CACGCC-GGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
117 CAAACCTCGAGAA-CTCA-C-ACCCCCTTAAAG---AG-C-AT--TTGAGATTTTACAGGTTTGC
* * * * * *** **
16200780 -GCACA-T-G--ATGTAAGATGGGTGCTG--GTGCTTGG-CCCTTATATTGGCCCCCTCCCCCTC
172 TGC-CAGTAGCCAT-TAA-A-GTGT-CTGAAATG--GGGACACTT-T-TT--TCAAAT---GGTC
* ** * * * * ** ** *
16200837 ATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
223 A-CAAA-ATCTTG---T-ACA----CTT--CGAG-TTTTTAG-CTGAATTGTTTTG-TG-CA-T-
** * * ** * * ** * * *
16200902 GCC-ATTAAAGTGTCTTAAATGGGGGCACTTTTTTCAA--AT-GGTCACAAAA-TCTTGTACAC-
270 GCCAACAAAAAT-AC---AA--GGATCACGTCTACCAAGTTTGGGGC-CAAAACTCCT-T-C-CG
** ** *** * * ** * * ** * *
16200961 ATTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAA-AAT-AAAAGGATCACGTCTACAA-
325 A-AAAAATTTTA----AAAAATCTCGAAC-CG-TAA-AAAGTTTCAAAA--AT--CGT-GAAAAG
* * * *** *** ** **
16201023 AGT--T-TGGGGCA--AAACTCCATC-TGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTT
377 AGTCGTCT-TGCCATGAAACTTCA-CGTG---AAGGCTTAAGGGA--CC--ATTGTATGAA-TTT
* ** * * * * * * * * *
16201082 AAAAAATCATGAAAAATAGAAAACGAGTCGTCTTTCCATGAATCTTCACGTGAAGGCTTAAGGGA
432 -ACAAGCCAT-AAAAAT-G---GC-A-TTGGC--ACTAAGAA--AT-A--TGAA-G---ATGTG-
* *** ** * * ** * * ***** * ** *
16201147 CCACTATATGAATTTACAAGCC-ATAAAT--ATGGCATTG-GCAT-GCAAAAATAT-GAAGATGT
477 -C-CTAAACCCACCTACCACCCTATCGATCCACGGC-TTGCGCATCCCGTCTCTCTGGCCGACGT
* ** * ** * ** ** * * *
16201206 ACCTAAACCCACCAACCACCCTATCG-ATCCACGGCTTGCGCATCCGTCTCTCTGGCTGGAG-T-
539 A-GT-GCCCCGCCCGCC-CCC--TCGTTTCGTCGG-TTG-GC-TTAG--GC-AT-AC-GGAGTTC
* * *** * * * *** ** * *
16201268 AGTGCCC-GCCCTCCCACCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTC-ATTC
591 A-TTCCCAG-TCTAAGATCAG-AC--T-GGACCGAGGGTT-GC---GGCAGAAGGA--TCGA--C
* ** * * ** * ** *
16201331 -CCA-GTCTA-AGATTGGACCGGACTGAGGGTTGCAGCAACAGGATCGGCACCACACAGAAGGGG
642 AGCACG--TAGAG-GGGGACCCGACCGA----T-CCCCGACTTG--C-GCATC-C-C-------G
* * * * * * * ** *
16201393 ACCCGGTC-GATCCCTGGCTTTCACATCCCACCCCTCTGGCTGGCTGAGCACTCGCATGCTCGTT
687 -CCC-CTCTG--GCC-GGC--TG--AGCGC-CCGCAC--GCT--C---G-TTTCG--TG--GGTT
* * * *
16201457 TAC-TAGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC-AAGCATACGGAGTTCATTCCCAGT
730 GACTTA-G--G-CATA--C--G--GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGT
* * * * *
16201520 CTAAGATCACACCATACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGGGCCGC
785 CTAAGATC-GATCAGA-CGAGGGTTGCGGCAGCACATGCTGGGCTCG-GCATGTGCTGGTGCCGC
* * * *
16201585 ATTTTTCTTCGCCGGGGAACCATCGCCGGAGGATCATCG
847 ATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCG
* * * *
16201624 GAGAACCTGACCGACGGCATTGGGG-TCCGACGATCGGAGGGGTCGGGGGGGTGTGCGCACATGA
1 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGA
* * * * *
16201688 TGTGAGATGAGTGCTAGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAAC
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
16201753 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTA
131 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
16201818 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TGT
196 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTG-
* *
16201882 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTATGGGGCCAAAACTCCCTCCG
260 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * * **
16201947 AAAAAAATTTAAAAAATCTCGAATCGCATAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTC
325 AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTG--AAA-AG------AGTC
* *
16202012 GTCCTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
381 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* ** * *
16202077 TGGCATTGGCA-TGTAGAAATATGAAGATGTGCCTAAAAACACCTACCACCCTACCGATCCACGA
446 TGGCATTGGCACT-AAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
16202141 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTCCCCGCCCGCCCGCTCGTTTTGTCGGTTG
510 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG---CCCCGCCCGCCCCCTCGTTTCGTCGGTTG
* * ** * ** * * * *
16202206 GCTTAGGCATACGGAGGTCATTCCTAGTCTAAGATTGGA-TCGAATTGAGGGTTACAGTAGCAGG
572 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCGGCAGAAGG
* * * * * * * * *
16202270 ATTGGCAGCATGCAGAGGGGGACCCAACCGATCCTCGGCTTGCGCAACCTGCCCCTCTGGCCGGC
636 ATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * **
16202335 TCAGTGCCCGCATGCTCGTTTCGTGGGTTGACGTAGGCATATAGAGTTCATTCCCAGTCTAAGCA
701 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* *
16202400 TGA-GAAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTCCAGCAGCACATGCTGGGCT
766 T-ACGAAGTTCATTCCCAGTCTAAGATC-GATCAGA-CGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * *
16202464 CGAGCATGTGCTGGTGCCGTATTTTTCTTTGCCGGGGCACCATCGTTGGAGCATCACCG
828 CG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCG
* * * * *
16202523 GAGAACCTGACCAGCGGCATTAGGGTTCCGATGATCGAGGGGGTC-GGGGGGTGTGCGCACATGA
1 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGA
* * *
16202587 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGACAAC
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
16202652 TCACACCCCCTTAAAGAGCATTTGAGATTTTACCGGTTTACTACCAGTAGCCATTAAAGTGTCTG
131 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
16202717 AAATTGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
196 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGT
* * * * *
16202782 TTTGTGCATGGCAACAAAAATACAAGGATCTCG--T-CCAAGTTTGGGCCCAAAACTCTTTCTGA
261 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* *
16202844 AAAAATTTTAAAAAATCCCGAATCG-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
326 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC--G-----T-GAAAA-GAGTCG
* *
16202908 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTATATGAATTTACAAGCCATAAAAAT
382 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
16202973 GGCATTGGCAC-ATAGAAATATGAAGATGTCCCTAAATCCACCCACCACCCTATCGATCCACCGC
447 GGCATTGGCACTA-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* ** * * *
16203037 TTGCGCATCCCGTCTCTGTGGCCGGTGTAGTGCCTGCCCGCCCGTCCGCTCGCTGGTTTCATCGA
511 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-C--CCCGCCCG-CC-C-C-CTCGTTTCGTCGG
** * * *
16203102 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGGGGCAGCA
569 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGAA
* * * ** * * * *
16203167 GGATCGATAGCACGTAGAAGGGGATCCGGTCGATCCCTGACTTACGCATTCCGCCCCTCTGGTCG
634 GGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCG
* * *
16203232 GCTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
699 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* *
16203297 CATACGAAGTTCATTCCCAGTCTAAGATCGAATC-GAACTGAGGGTTACGGTAGCACATGCTGGG
764 CATACGAAGTTCATTCCCAGTCTAAGATCG-ATCAG-AC-GAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
16203361 CTTGGGCATGTGTTGGTGCAACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCG
826 C-TCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCG
* * * * *
16203422 GAGAACCTGACCGGAGGCATTGCGATTTCGACGATCGGGGGGGCCGGGGGGGGTGTGCGCACATG
1 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-AGGGGGGTGTGCGCACATG
* * *
16203487 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGGGGA
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
16203552 CTCACACCTCCTTATAA-AGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
130 CTCACACCCCCTTA-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
16203616 TGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-T
194 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* ** * *
16203680 GTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGAACCAAAAATCCTTT
259 G-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
*
16203745 CGAAAAAATTTTAAAAAATC-CTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGACAACGA
323 CGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTG------A-A-AA-GA
* * *
16203809 GTCGTCTTGCCATGAAACTTTACGTAAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAA
378 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
16203874 AAATGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATC-ATTCC
443 AAATGGCATTGGCACT-AAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA-TCC
* * *
16203937 ACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCATCCACCTGCTCATTTC
506 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CCCGCCC-GCC-CC--CTCGTTTC
* * * **
16204002 GTCGGTTGGCCTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGA-TCGAACCGAGGGTTATG
564 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCG
* * * * * ** * *
16204066 GTAGCAA-GATTGATAGCACGCAGAGGGGGACCCGACCGAACAAC-AGCTTCCGCATCCCACCCC
628 GCAG-AAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGA-CTTGCGCATCCCGCCCC
* *
16204129 TCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCC
691 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
*
16204194 AGTCTAAG-AT-CG--G---A---CC-G-----GA-C---C--A--AGGGTTGCGGTAGCACATG
756 AGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGATCAGACGAGGGTTGCGGCAGCACATG
* ** * *
16204235 CTGGGCTCGAGCATTTGCTGGTGCCAAATTTTTCTTGGTCGGGGCACCATCG-CTGGAGCATCGT
821 CTGGGCTCG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCAT
*
16204299 CA
884 CG
* * * * * *
16204301 GAGATCCTGATCGGTGGCATTAGGGTTCCGGCGATC-GGGGGGCCCGGGGGG-GTGCGCACATGA
1 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGA
* * *
16204364 TGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAAC
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
** *
16204429 TCACTGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTG
131 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
16204494 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCTAGTTTTTAGCTGAA-TGT
196 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTG-
*
16204558 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
260 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
**
16204623 AAAAAATTTTAAAAAATC-CTGAACCGTAAAAAGTTTTTAAAATCGTGAAAAATAGAAAACGAGT
325 AAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATC--G-----T-GAAAA-GAGT
16204687 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
380 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
16204752 ATGGCATTGGCAC-ATAGAGATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
445 ATGGCATTGGCACTA-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
** * * * * * *
16204816 TTTTGCGCATCCCATCTCTCTGGCCGACGTAGTG-CCCGCCCACCCGCTCGTTTCATCGATTAGC
509 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCGCCCGCCCCCTCGTTTCGTCGGTTGGC
* * * *
16204880 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGTAGGATA
574 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGAAGGATC
* * * *
16204945 GGCAGCACGTAGAGGGGGACCCGGCCGATCCCC-AGCTTGCGTATCCCGCCCCTCTAGCCGGCTG
639 GACAGCACGTAGAGGGGGACCCGACCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
16205009 AACGCCCACATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAAGCATA
703 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * * *
16205074 CGGAGTTCATTCCTAGTCTAAGATCGAACCGGACCGATGGTTGCGGTAGCACATGCTGGGCTCGG
768 CGAAGTTCATTCCCAGTCTAAGATCG-ATCAGA-CGAGGGTTGCGGCAGCACATGCTGGGCTC-G
16205139 GCATGTGCTGGTGCCAG-ATTTTTCTTCGTCGGGGCACCA---TC---G---C--CG
830 GCATGTGCTGGTGCC-GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCG
* * ** * * *
16205184 GAGAACTTGATCGGCATCATTGGGGTTCCGACGATCTGGGGGGCTAGGGGGATGTGCGCACATGA
1 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGA
* *
16205249 TGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAAC
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * * * *
16205313 TCACACCCCCTTAAAGAGCATTTGAGATGTTATAGGTTTGCGGCCAGTAGGCGTTAAAGTGTCTA
131 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
16205378 AAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAAGTT-
196 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTG
* *
16205442 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCA
260 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * *
16205507 AAAAAATTTTAAAAAATGC-CAAACCGCAAAAAGTTTCAAAAATCATGAAAACAAGAAAATGAGT
325 AAAAAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAATC--G------TGAAAA-GAGT
* * * *
16205571 CATCTTGCCATGAAACTTCACGTTAAGGCCTAAAGGACCATTGTATGAATTTACAAGCCATAAAA
380 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
** *
16205636 ATGGCATTGGCACGTAA-AAATATGAAGATGTGCCTAAACCCACCTACCACTTTATTGATCCACG
445 ATGGCATTGGCAC-TAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
16205700 GCTTGCGCATCCTGTCTCTCTGGCCGATGTAGTGCTCGCCCGCCCGCCCGCTCGTTTCATCGGTT
509 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CCCGCCCGCCCCCTCGTTTCGTCGGTT
* * * * * * * *
16205765 GGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGAACTGAGGGTTGTGGTAGTAGG
571 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGAAGG
** * * * * * *
16205830 ATCGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGTATCTCGCCCCTCTGGCTGAC
636 ATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGC
16205895 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
701 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
16205936 TCTTAATTTG
Statistics
Matches: 8630, Mismatches: 1379, Indels: 1213
0.77 0.12 0.11
Matches are distributed among these distances:
845 1 0.00
846 87 0.01
847 365 0.04
848 166 0.02
849 2 0.00
850 2 0.00
851 2 0.00
852 2 0.00
853 1 0.00
855 2 0.00
856 52 0.01
857 5 0.00
858 4 0.00
859 1 0.00
860 6 0.00
861 5 0.00
862 3 0.00
863 37 0.00
864 73 0.01
866 21 0.00
867 109 0.01
868 354 0.04
869 89 0.01
870 131 0.02
871 49 0.01
872 45 0.01
873 61 0.01
874 4 0.00
875 6 0.00
876 452 0.05
877 167 0.02
878 20 0.00
879 102 0.01
880 5 0.00
881 1 0.00
882 70 0.01
883 116 0.01
884 831 0.10
885 290 0.03
886 176 0.02
887 160 0.02
888 307 0.04
889 122 0.01
890 146 0.02
891 13 0.00
892 12 0.00
893 7 0.00
894 212 0.02
895 264 0.03
896 402 0.05
897 62 0.01
898 231 0.03
899 680 0.08
900 28 0.00
901 254 0.03
902 243 0.03
903 227 0.03
904 112 0.01
905 355 0.04
906 7 0.00
907 9 0.00
908 2 0.00
909 3 0.00
910 2 0.00
911 6 0.00
912 1 0.00
915 4 0.00
917 6 0.00
918 5 0.00
919 8 0.00
920 4 0.00
921 2 0.00
922 10 0.00
923 2 0.00
924 12 0.00
925 8 0.00
926 15 0.00
927 13 0.00
928 20 0.00
929 2 0.00
930 4 0.00
931 6 0.00
932 8 0.00
933 9 0.00
934 9 0.00
935 7 0.00
936 1 0.00
937 5 0.00
938 2 0.00
939 1 0.00
940 7 0.00
941 2 0.00
942 2 0.00
944 1 0.00
945 12 0.00
946 5 0.00
947 10 0.00
948 17 0.00
949 13 0.00
950 6 0.00
951 10 0.00
952 13 0.00
953 7 0.00
954 20 0.00
955 7 0.00
956 9 0.00
957 3 0.00
958 8 0.00
959 13 0.00
960 6 0.00
961 5 0.00
962 23 0.00
963 10 0.00
964 13 0.00
965 20 0.00
966 4 0.00
968 1 0.00
969 2 0.00
970 4 0.00
971 3 0.00
972 1 0.00
973 6 0.00
974 2 0.00
975 2 0.00
976 3 0.00
977 2 0.00
978 7 0.00
979 9 0.00
980 10 0.00
981 8 0.00
982 7 0.00
983 4 0.00
984 4 0.00
985 21 0.00
986 11 0.00
987 13 0.00
988 7 0.00
989 9 0.00
990 7 0.00
991 10 0.00
992 2 0.00
993 6 0.00
994 6 0.00
995 6 0.00
996 3 0.00
998 3 0.00
999 2 0.00
1001 2 0.00
1002 5 0.00
1003 7 0.00
1005 1 0.00
1006 6 0.00
1007 4 0.00
1008 4 0.00
1010 1 0.00
1011 5 0.00
1012 18 0.00
1013 4 0.00
1014 15 0.00
1015 10 0.00
1016 6 0.00
1017 4 0.00
1018 4 0.00
1021 8 0.00
1022 6 0.00
1023 17 0.00
1024 552 0.06
1025 513 0.06
1026 677 0.08
1027 444 0.05
1028 437 0.05
1029 404 0.05
1030 645 0.07
1031 547 0.06
1032 461 0.05
1033 339 0.04
1034 499 0.06
1035 351 0.04
1036 471 0.05
1037 635 0.07
1038 372 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (885 bp):
GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGT
TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACTAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGACGTAGTGCCCCGCCCGCCCCCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGAAGGATCGACAGCACGTAG
AGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCC
CAGTCTAAGATCGATCAGACGAGGGTTGCGGCAGCACATGCTGGGCTCGGCATGTGCTGGTGCCG
CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCG
Found at i:16200608 original size:26 final size:26
Alignment explanation
Indices: 16200572--16200624 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16200562 GTTGACTTAG
*
16200572 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
16200598 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
16200624 G
1 G
16200625 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:16201501 original size:25 final size:25
Alignment explanation
Indices: 16201473--16201520 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
16201463 GTTGACTTAG
16201473 GCATACAGAGTTCATTCCCAGTCAA
1 GCATACAGAGTTCATTCCCAGTCAA
*
16201498 GCATACGGAGTTCATTCCCAGTC
1 GCATACAGAGTTCATTCCCAGTC
16201521 TAAGATCACA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCCAGTCAA
Found at i:16203300 original size:26 final size:26
Alignment explanation
Indices: 16203270--16203322 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16203260 GTTGACTTAG
*
16203270 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16203296 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16203322 G
1 G
16203323 ATCGAATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16203710 original size:901 final size:899
Alignment explanation
Indices: 16200555--16205935 Score: 6824
Period size: 899 Copynumber: 6.0 Consensus size: 899
16200545 CACATTTTTC
* *
16200555 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATAC-AGAGTTCATTCCCAA
1 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAG
* * * *
16200619 TCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATTCTGGGCTCGGGAATGTGCTGGTGCCA
65 TCTAAGATCAGA-CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCA
* * *
16200684 CATTTTTCTTCATCGGGGCACCATCGTCGGAGCA-CGCCGGAGAACCTAACC-GACGGCATTGGG
129 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGA-GGCATT-GG
** *
16200747 GTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTAAGATGGGTGCTGGTGCTTGG
192 GTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
**
16200812 CCCTTATATTGGCCCCCTCCCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTG
257 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTG
* *
16200877 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGGCACTTTTTTCAAATG
322 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
16200942 GTCACAAAATCTTGTACACATT-GAGTTTTTAGCTGAAT-TGTTTTGTGCATGCCAACAAAAATA
387 GTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATGT-TTTTGTGCATGCCAACAAAAATA
* * * * *
16201005 AAAGGATCACGTCTACAAAGTTTGGGG-CAAAACTCCATCTGAAAAAATTTTAAAAAATCCCAAA
450 CAAGGATCACG-CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
* * * *
16201069 CCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTTCCATGAATCTTCACGTG
514 CCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * *
16201134 AAGGCTTAAGGGACCACTATATGAATTTACAAGCCATAAATATGGCATTGGCATGCA-A-AAATA
579 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CATAGAAATA
* * *
16201197 TGAAGATGTACCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCAT-CCGTCTCTCTGG
642 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACCGCTTGCGCATCCCGTCTCTCTGG
* * * * * * *
16201261 CTGGA-GTAGTGCCCGCCCTCCCACCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATATGGAGT
707 C-CGATGTAGTGCCTGCCCGCCC-GCCG-CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
** * * * * * * * *
16201325 TCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGCAGCAACAGGATCGGCACCACACAGAAG
769 TCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGG
* * * * * * * * *
16201390 GGGACCCGGTCGATCCCTGGCTTTCACATCCCACCCCTCTGGCTGGCTGAGCACTCGCATGCTCG
834 GGGACCCGGCCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
16201455 T
899 T
* * *
16201456 TTAC-TAGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC-AAGCATACGGAGTTCATTCCCAG
1 TT-CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAG
* * * * *
16201519 TCTAAGATCACACCATACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGGGCCG
65 TCTAAGATCAGA-CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCA
* * * * *
16201584 CATTTTTCTTCGCCGGGGAACCATCGCCGGAGGATCATCGGAGAACCTGACC-GACGGCATTGGG
129 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGA-GGCATTGGG
* * * * * * *
16201648 GTCCGACGATCGGAGGGGTCGGGGGGGTGTGCGCACATGATGTGAGATGAGTGCTAGTTCTTGGC
193 TTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
16201713 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGA
258 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
16201778 GATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGG
323 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
16201843 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAA
388 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAA
* * * * *
16201908 GGATCACGTCTACCAAGTATGGGGCCAAAACTCCCTCCGAAAAAAATTTAAAAAATCTCGAATCG
453 GGATCACG-CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
* * * * * *
16201973 CATAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCCTACCATGAAACTTCACGTGAAG
517 TAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
**
16202038 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
582 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAG
** * *
16202103 ATGTGCCTAAAAACACCTACCACCCTACCGATCCA-CGACTTGCGCATCCCGTCTCTCTGGCCGG
647 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACCG-CTTGCGCATCCCGTCTCTCTGGCCGA
* * ** *
16202167 CGTAGTGCCTCCCCGCCCG-C-CCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGGTCATTCC
711 TGTAGTGCCTGCCCGCCCGCCGCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCC
* ** * ** * * * *
16202230 TAGTCTAAGATTGGATCGAATTGAGGGTTACAGTAGCAGGATTGGCAGCATGCAGAGGGGGACCC
776 CAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC
** * * * * * *
16202295 AACCGAT-CCTCGGCTTGCGCAACCTGCCCCTCTGGCCGGCTCAGTGCCCGCATGCTCGT
841 GGCCGATCCCT-GACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* **
16202354 TTCGTGGGTTGACGTAGGCATATAGAGTTCATTCCCAGTCTAAGCATGA-GAAGTTCATTCCCAG
1 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT-ACGAAGTTCATTCCCAG
* * *
16202418 TCTAAGATCAGATCAGACCGAGGGTTCCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCG
65 TCTAAGATCAGA-CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCA
* * * * ** * *
16202483 TATTTTTCTTTGCCGGGGCACCATCGTTGGAGCATCACCGGAGAACCTGACCAGCGGCATTAGGG
129 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGAGGCATT-GGG
* * *
16202548 TTCCGATGATCGAGGGGGTC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
193 TTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* ** *
16202612 CCTTATATTGGCCCCTTATCCCTCATCAAACCTTGACAACTCACACCCCCTTAAAGAGCATTTGA
258 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
* * * * *
16202677 GATTTTACCGGTTTACTACCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATTG
323 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
16202742 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGGCAACAAAAATACAA
388 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAA
* * * * *
16202807 GGATCTCG-T-CCAAGTTTGGGCCCAAAACTCTTTCTGAAAAAATTTTAAAAAATCCCGAATCG-
453 GGATCACGCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
*
16202869 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
518 AAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
16202934 CTTAAGGGACCACTATATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGA
583 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGA
* * * * *
16202999 TGTCCCTAAATCCACCCACCACCCTATCGATCCACCGCTTGCGCATCCCGTCTCTGTGGCCGGTG
648 TGTGCCTAAACCCACCTACCACCCTATCGATCCACCGCTTGCGCATCCCGTCTCTCTGGCCGATG
* *
16203064 TAGTGCCTGCCCGCCCGTCCGCTCGCTGGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCC
713 TAGTGCCTGCCCGCCCG-CCGC-CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCC
* ** ** * * *
16203129 CAGTCTAAGATCAGACC-AGACCAAGGGTTGGGGCAGCAGGATCGATAGCACGTAGAAGGGGATC
776 CAGTCTAAGATCAGACCGA-ACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
* * * * * *
16203193 CGGTCGATCCCTGACTTACGCATTCCGCCCCTCTGGTCGGCTGAGCGCCCGTACGCTCAT
840 CGGCCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
*
16203253 TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGT
1 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGT
* * * * * * *
16203318 CTAAGATC-GA-ATCGAACTGAGGGTTACGGTAGCACATGCTGGGCTTGGGCATGTGTTGGTGCA
66 CTAAGATCAGACA--G-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCC
*
16203381 ACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGAGGCATTGCG
128 ACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGAGGCATTG-G
* *
16203446 ATTTCGACGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
192 GTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* ** * *
16203511 GCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGGGGACTCACACCTCCTTATAA-AGCATT
256 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA-AAGAGCATT
*
16203575 TGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
320 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
16203640 TTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATA
385 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATA
* ** * * *
16203705 CAAGGATCATGTCTACCAAGTTTGGAACCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCTGAA
450 CAAGGATCACG-CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
* * *
16203770 CCGTAAAAAGTTTTAAAAATCGTGAAAAATAGACAACGAGTCGTCTTGCCATGAAACTTTACGTA
514 CCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* ***
16203835 AAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
579 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATG
* *
16203900 AAGATGTGCCTAAACCCACCTACCACCTTATC-ATTCCACGGCTTGCGCATCCCGTCTCTCTGGC
644 AAGATGTGCCTAAACCCACCTACCACCCTATCGA-TCCACCGCTTGCGCATCCCGTCTCTCTGGC
* * * * * *
16203964 CGATGTAGTGCCCGCCCGCCCATCCACCTGCTCATTTCGTCGGTTGGCCTAGGCATACGGAGTTC
708 CGATGTAGTGCCTGCCCGCCC-GCCGCC-GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
* * * * * * **
16204029 ATTCCCAGTCTAAGATTAGATCGAACCGAGGGTTATGGTAGCAAGATTGATAGCACGCAGAGGGG
771 ATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGG
* * * * * * *
16204094 GACCCGACCGAACAACAG-CTTCCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGT
836 GACCCGGCCGATC-CCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
*
16204158 TTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CG--G---A---CC-G-
1 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGT
* * *
16204211 ----GA-C---C--A---AGGGTTGCGGTAGCACATGCTGGGCTCGAGCATTTGCTGGTGCCAAA
66 CTAAGATCAGACAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACA
* * * * *
16204263 TTTTTCTTGGTCGGGGCACCATCG-CTGGAGCATCGTCAGAGATCCTGATCGGTGGCATTAGGGT
131 TTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGTCGGAGAACCTGACCGGAGGCATT-GGGT
* *
16204327 TCCGGCGATC-GGGGGGCCCGGGGGG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
194 TCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * **
16204390 CCTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACTGCCCCTTAAAGAGCATTTGAG
259 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
16204455 ATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
324 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * *
16204520 CACAAAATCTTGTACAGTTCTAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAG
389 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAG
*
16204585 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGT
454 GATCACG-CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
*
16204650 AAAAAGTTTTTAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
518 AAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
16204715 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAGATATGAAGA
583 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGA
* * *
16204780 TGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGTTTTGCGCATCCCATCTCTCTGGCCGAC
648 TGTGCCTAAACCCACCTACCACCCTATCGATCCACCG-CTTGCGCATCCCGTCTCTCTGGCCGAT
* * *
16204844 GTA--G--TGCCCGCCC-AC-CCGCTCGTTTCATCGATTAGCTTAGGCATACGGAGTTCATTCCC
712 GTAGTGCCTGCCCGCCCGCCGCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * *
16204903 AGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGTAGGATAGGCAGCACGTAGAGGGGGACCCG
777 AGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
* * * * * *
16204968 GCCGATCCC-CAGCTTGCGTATCCCGCCCCTCTAGCCGGCTGAACGCCCACATGCTCGT
842 GCCGATCCCTGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* * *
16205026 TTCGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGT
1 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGT
* * * *
16205091 CTAAGATC-GAACCGGACCGATGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA
66 CTAAGATCAG-A-CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCA
* * * *
16205155 GATTTTTCTTCGTCGGGGCACCA---TC---G---C--CGGAGAACTTGATCGGCA-TCATTGGG
129 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG-AGGCATT-GG
* ** * *
16205208 GTTCCGACGATCTGGGGGGCTAGGGGGATGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGG
192 GTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
16205273 CCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTG
257 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTG
* * * * * *
16205337 AGATGTTATAGGTTTGCGGCCAGTAGGCGTTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
322 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
16205402 GCCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAA-GTTTTTTGTGCATGCCAACAAAAATAC
387 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATG-TTTTTGTGCATGCCAACAAAAATAC
* * * *
16205466 AAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATGCCAAAC
451 AAGGATCACG-CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* * * * * *
16205531 CGCAAAAAGTTTCAAAAATCATGAAAACA-AGAAAATGAGTCATCTTGCCATGAAACTTCACGTT
515 CGTAAAAAGTTTTAAAAATCGTGAAAA-ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * * *
16205595 AAGGCCTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATATG
579 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATG
** * * *
16205660 AAGATGTGCCTAAACCCACCTACCACTTTATTGATCCACGGCTTGCGCATCCTGTCTCTCTGGCC
644 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACCGCTTGCGCATCCCGTCTCTCTGGCC
*
16205725 GATGTAGTG-CTCGCCCGCCCG-C-CCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCAT
709 GATGTAGTGCCT-GCCCGCCCGCCGCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
* * ** * * *
16205787 TCCTAGTCTAAGATCAGACCGAACTGAGGGTTGTGGTAGTAGGATCGGTAGCACGCAGAGGGGGA
773 TCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGA
* * * * *
16205852 CCCGGCCGATCCCCGACTTGCGTATCTCGCCCCTCTGGCTGACTGAGCGCCCGCACGCTCGT
838 CCCGGCCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
16205914 TTCGTGGGTTGACTTAGGCATA
1 TTCGTGGGTTGACTTAGGCATA
16205936 TCTTAATTTG
Statistics
Matches: 3928, Mismatches: 464, Indels: 189
0.86 0.10 0.04
Matches are distributed among these distances:
867 1 0.00
868 176 0.04
869 4 0.00
870 3 0.00
872 9 0.00
874 1 0.00
875 4 0.00
876 454 0.12
877 7 0.00
878 10 0.00
879 102 0.03
880 1 0.00
882 1 0.00
883 31 0.01
884 414 0.11
885 50 0.01
886 1 0.00
887 1 0.00
888 178 0.05
889 4 0.00
891 1 0.00
892 1 0.00
894 64 0.02
895 193 0.05
896 49 0.01
897 6 0.00
898 177 0.05
899 659 0.17
900 398 0.10
901 475 0.12
902 30 0.01
903 3 0.00
904 49 0.01
905 368 0.09
906 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGT
CTAAGATCAGACAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACA
TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGAGGCATTGGGTTC
CGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGA
TCACGCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAA
AAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACCGCTTGCGCATCCCGTCTCTCTGGCCGATGTAG
TGCCTGCCCGCCCGCCGCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
TAAGATCAGACCGAACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCG
ATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
Found at i:16205079 original size:26 final size:26
Alignment explanation
Indices: 16205043--16205095 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16205033 GTTGACTTAG
*
16205043 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16205069 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16205095 G
1 G
16205096 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16207380 original size:26 final size:26
Alignment explanation
Indices: 16207344--16207421 Score: 147
Period size: 26 Copynumber: 3.0 Consensus size: 26
16207334 GTTGACTTAG
*
16207344 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16207370 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16207396 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16207422 AATTGGATCG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16208287 original size:26 final size:26
Alignment explanation
Indices: 16208251--16208304 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
16208241 TGGGTTGACA
16208251 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
16208277 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
16208303 TA
1 TA
16208305 AGATTGAACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:16210090 original size:26 final size:26
Alignment explanation
Indices: 16210061--16210111 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16210051 GTTGGCTTAG
*
16210061 GCATACGGAGTTAATTCCTAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
16210087 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTAATTCCCAGTCTA
16210112 CGATCAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:16210512 original size:901 final size:903
Alignment explanation
Indices: 16206470--16210825 Score: 5437
Period size: 892 Copynumber: 4.8 Consensus size: 903
16206460 CCAAATTGTC
* * * *
16206470 CATTCCCAGTCTAAGCATACGAAGTTCATTCTCAGTCTAAGATCGGACCAGACTGAGGGTT--AT
1 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTTGCA-
* * * *
16206533 GACAGCACATGCTGGGTTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCCGGGCACCATC-AT
64 G-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCT
* * *
16206597 CGGAGCATCATCGGAGAACCTGACC-GACGGCATTGGGGTT-TCGGCGATCGGGGGGGGTCGGGG
128 CGGAGCATCGTCGGAGAACCTGACCAG-CGGCATTGGGGTTCT-GGTGATC--GGGGGGCCGGGG
* *
16206660 AGGGCGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
189 -GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
16206725 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGT
253 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGT
* *
16206790 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGA
318 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * *
16206855 GTTTTTAGGTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAGTTTGGG
383 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * *
16206920 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATACCGAACCGCAAAAAGTTTCAAAAATCATGAA
448 GCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAA
* * *
16206985 AAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAAT
513 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
16207050 TTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
578 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * * **
16207115 CCTATTGATCCACAGCTT-CTGCATCCCATCTCTCTGATCGGAGTAGT----GCTTGCCCGTCCG
643 CCTATCGATCCACGGCTTGC-GCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGTCCG
* * * *
16207175 CCCGCTTGTTTCGTCGATTGGCTTAGGCATACGAAGTTCATTTCCAGTCTAAGATCGGACCCGAC
707 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCCGAC
* * * * * ** * * * *
16207240 CAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAAAGGAGGACTTGGCCGATTCTCGACTTGCGCA
772 CGAGTGTTACGGCAGCAGGATCGGCAGCATGCAAAGGGGGACCCGGTCGATCCCCGGCTTGCGCA
* * *
16207305 ---------TCT---CGTCT----GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAG
837 TCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAG
16207354 TT
902 TT
16207356 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
1 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A----C---C--
* * * **
16207421 AAATTGGATCGGACGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTC
50 -----GGA-C-GAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTC
* *
16207486 -T--T--------CA---C-CGGAGCATCGTCGGAGAACCTAACC-GACGGCACTGGGGTT-TCG
108 TTCATCGGGGCACCATCGCTCGGAGCATCGTCGGAGAACCTGACCAG-CGGCATTGGGGTTCT-G
** *
16207534 ACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGATACTTGGCCCTTA
171 GTGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
16207599 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
235 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
16207664 TATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
300 TATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
*
16207729 AAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
365 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * *
16207794 ACGCCTACCAAGTTTAGGGCCAAAA-ATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAA
430 ACGTCTACCAAGTTTGGGGCCAAAACA-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAA
* * *
16207858 AAGTTTCG-AAATCGTGAAAAATAGAAAACAAGTTGTCTTGCCATGAAACTTCATGTGAAGGCTT
494 AAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
16207922 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
559 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * * * *
16207987 GCCTAAACCCACCAACGACCCTATCGATCCATGGCTTGTGCAT-CGGTCTCTCTGGTCGGCGTAG
624 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAG
* * *
16208051 TGCCCGCCCGCTCG-CTCGCTCACTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCA
689 TGCCCGCCCGCCCGTC-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCA
* * ** * ** ** * * * **
16208115 GTCTAAGATTAGACCAGATTGAG-GATTTCGATATTAGGATTGGCAGCAAGTAGTGGGGGACCCG
753 GTCTAAGATCAGACCCGACCGAGTG-TTACGGCAGCAGGATCGGCAGCATGCAAAGGGGGACCCG
* * * * * **
16208179 ATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCACACGCTCATTTTTTGG
817 GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGG
*
16208244 GTTGACATAGGCATACGGAGTT
882 GTTGACTTAGGCATACGGAGTT
* * *
16208266 CATTCCCAGTCTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGAACTGGACTGAGGGTTGCA
1 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGAC-GAGGGTTGCA
* * * *
16208330 GCAGCACATGCTGGGCTCGGGTATGTGCTGGTGTCGCATTTTTCTTCATCGAGGCACCATCACCG
64 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCAT---C-
** * ***
16208395 TGGCATCGCCGTAGCATCCCCGGAGAACCTGACCAGCGGCATTAGGGTTCCAATGATCGGGGGGG
125 --GC-TCG--G-AGCATCGTCGGAGAACCTGACCAGCGGCATTGGGGTTCTGGTGATC-GGGGGG
* * *
16208460 CCAGGGGGGTGTGTGCACATGATGTGCGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTA
183 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
16208525 TCCCTCATCAAGCCTTGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTG
248 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
*
16208590 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAGTCTTGTACAC
313 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
16208655 TTCCAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGGTCAGGTCTACCAAGT
378 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
** ** * *
16208720 TTGGGGCCAAAATGCCTTCAAAAAAAATTTTAAAAAATCCCGAACCGCAAATAGTTTTGAAAATC
443 TTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATC
*
16208785 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
508 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
**
16208850 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
573 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * * *
16208915 GCCACCCTATCGATCCTCGACTTGCGCATCCTGTCTCTCTGGCCGGCGTAGT----ACCCG--C-
638 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCG
* * * *
16208973 -CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCAAATCTAAGATCGGATC
703 TCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * * * * *
16209037 TGACCGGGTGTTACGGCAACAAGATTGGTAGCATACAGAGGGGGACCTGGTCGATCCCCGGCTTG
768 CGACCGAGTGTTACGGCAGCAGGATCGGCAGCATGCAAAGGGGGACCCGGTCGATCCCCGGCTTG
* * * * * * *
16209102 TGCATCCTGCCCCTCTGGCCGACTGAGCGTCTGTACGCTCATTTCATGGGTTGACTTAGACAGAC
833 CGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAC
*
16209167 AGAGTT
898 GGAGTT
* * * * *
16209173 CTTTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAAACCAGACCGAGGGTTAC-G
1 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCAG
* * * * * *
16209237 GAGCACATGCTGGGCTCGGGCATGTGCTGGTACCACATTTTTCTTCGTTGGGGCACTAACG-TCG
65 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCTCG
** * *
16209301 GAGCATCGTCGGAGAACCTGA-CAGGCGGCATTCAGGTTC-CGTCGATCGGGGGG-C-TGGGGGT
130 GAGCATCGTCGGAGAACCTGACCA-GCGGCATTGGGGTTCTGGT-GATCGGGGGGCCGGGGGGGT
* * *
16209362 GTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCG
193 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * * *
16209427 AACCGCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAATAGCCA
258 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCA
* *
16209492 TTTAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
323 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* *
16209557 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAA
388 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * *
16209622 AACACCTT-CAAAACAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAAT
453 AACACCTTCCGAAA-AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAAT
* * *
16209686 AGCAAACGAGTCGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAA
517 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
16209751 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACAACGCAA
582 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * *
16209816 TCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCTCGCTCGTCCGCTCGC
647 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGC
* * *
16209881 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGAACTGAG
712 TCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCCG-ACCGAG
* * * * *
16209945 TGTTACGGTAGCATGATCGGCAGCATGTAAAGGGGAACCCGGTCGATCCTCGGCTTGCGCATCCC
776 TGTTACGGCAGCAGGATCGGCAGCATGCAAAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCC
* * * * *
16210010 GCCCCTCTGGCCGACTGAGTGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
841 GCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTT
* * * *
16210073 AATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTACGATCAGACCGGATCGAGTGTTGCAG
1 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCAG
* *
16210138 TAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCT-G
65 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCTCG
* *
16210202 GAGCATCGTCGGAGAACCTGACCAGCGACATTGTGGTTCTGGTGATC-GGGGGCCGGGGGGGTGT
130 GAGCATCGTCGGAGAACCTGACCAGCGGCATTGGGGTTCTGGTGATCGGGGGGCCGGGGGGGTGT
* * * *
16210266 GCGCACATGATGTGTGATTGGTGCTGGTACTTGGCCCTTAT-TTGGCCCGCTATCCTTCATCAAA
195 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * * *
16210330 CCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTGGCCATT
260 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATT
* * * *
16210395 AAAGTGTCCGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTA
325 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * *
16210460 GCTGAATTGTTTTGTGCATGCCAACAAATATACAAGGATCACGACAACCAAGTTTGGGGCCAAAA
390 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * ** *
16210525 CTCCTTCCGAAAAACTTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGA
455 CACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGA
* *
16210590 AAACAAGTCGTCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAG
520 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * * *
16210655 CCATAAAAATAGCAATGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
585 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* *
16210720 ATCCACGACTTACGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCG
650 ATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCG
* ** *
16210785 TTTCATCAATTGGCTTAGGCATACGGAGTTCATTCCCAGTC
715 TTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTC
16210826 GACTGACGGC
Statistics
Matches: 3008, Mismatches: 362, Indels: 185
0.85 0.10 0.05
Matches are distributed among these distances:
886 39 0.01
887 2 0.00
888 50 0.02
889 4 0.00
890 19 0.01
891 154 0.05
892 753 0.25
893 16 0.01
894 160 0.05
895 35 0.01
896 4 0.00
897 3 0.00
898 4 0.00
899 5 0.00
900 224 0.07
901 557 0.19
902 55 0.02
903 5 0.00
905 2 0.00
906 53 0.02
907 215 0.07
908 50 0.02
909 4 0.00
910 80 0.03
911 4 0.00
912 1 0.00
913 338 0.11
914 152 0.05
915 20 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (903 bp):
CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGAGGGTTGCAGC
AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCTCGG
AGCATCGTCGGAGAACCTGACCAGCGGCATTGGGGTTCTGGTGATCGGGGGGCCGGGGGGGTGTG
CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
ACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAA
AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
TCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGT
TTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCCGACCGAGTGTTA
CGGCAGCAGGATCGGCAGCATGCAAAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCC
TCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTT
Found at i:16211600 original size:26 final size:26
Alignment explanation
Indices: 16211564--16211617 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
16211554 TCGGTTGACA
16211564 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
16211590 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
16211616 TA
1 TA
16211618 AGATTGAACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:16213405 original size:26 final size:26
Alignment explanation
Indices: 16213376--16213428 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16213366 GTTGGCTTAG
*
16213376 GCATACGGAGTTAATTCCTAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
16213402 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
16213428 G
1 G
16213429 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:16214087 original size:900 final size:900
Alignment explanation
Indices: 16210840--16214086 Score: 4428
Period size: 893 Copynumber: 3.6 Consensus size: 900
16210830 GACGGCATCG
* * *
16210840 GGGTTCCGGCAATTAGGGGGCCGGGCGG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
1 GGGTTCCGGCGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*** * *
16210904 CCCTTATATTTTTCCCCTATCGCTCATCAAACCTCGAGAACTCACACCCCCCTTCAAGAGCATTT
66 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCCTTAAAGAGCATTT
*
16210969 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAT
130 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
16211034 GGTCACAAACTCTTGTACAATTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
195 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * * *
16211099 GAGGATCACATCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAAGTTTAAAAAATCTCGAAC
260 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
* * *
16211164 CGTAAAAATTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
325 CGCAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
*
16211229 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATTTGA
390 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
* * * * * * *
16211294 AGATGTGCCTAAACCCACCAACGACCCTATTGATCCACGTCTTGTGCAT-CGGTCTCTCTGGTCG
455 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * *
16211358 GCGTAGTGCCCGCCCGCTCGCTCGCCCACTCCTTTTGTCTGTTGGCTTAGGCATACGGACTTCAT
520 GCGTAGTGCCCGCCCGCTCGC-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * *
16211423 TCCCAGTCTAATATCAGACCGGACTGAGGGTTTCGATAGTAGGATCGACAGCAAGCAGAGGGGGA
584 TCCCAGTCTAAGATCAGACCGAACTGAGAGTTACGGTAGCAGGATCGGCAGCAAGCAGAGGGGGA
* * *
16211488 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCATTTT
649 CCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTC
* * * * *
16211553 TTCGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAGGCATACGGAGTTCATTCCCAGTCTA
714 ATGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * *
16211618 AGAT-TGAACTGGACTGAGGGTTGTAGCAGCACATGCTGGGCTCGGGTATGTGCTGGTGTCACAT
779 AGATCAGAAC-GGAC-GAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACAT
* * * * *
16211682 TTTTCTTCATAGAGGCACCATCACCGTGGCATCGCCGTAGCATCCCCGCAGAACCTGACCAGTGG
842 TTTTCTTCATCGGGGCACCAT---C---GC-T-G--G-AGCATCGCCGGAGAACCTGACCAGCGG
16211747 CATTA
896 CATTA
*
16211752 GGGTTCCAGCGATCAGGAGGGCCGCTGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
1 GGGTTCCGGCGATCAGG-GGGCCG--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
16211817 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTTGAGAACTCACACCCCCTTAAAGAGCAT
63 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
*
16211882 TTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
128 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * *
16211947 ATGGTCACAAAGTCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAAT
193 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * *
16212012 ACAAGGGTCAGGTCTACCAAGTTTGGGGCCAAAA-TGCCTTCAAAAAAAATTTTAAAAAATCCCG
258 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCAAAAAAATTTTAAAAAATCCCG
* * * *
16212076 AACCGCAAATAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACG
322 AACCGCAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACG
16212141 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATA
387 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATA
*
16212206 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCTCGGCTTGCGCATCCCGTCTCTCTGG
452 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * *
16212271 CCGGCGTAGT----ACCCG---GCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTC
517 CCGGCGTAGTGCCCGCCCGCTCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * * * * * * *
16212329 ATTCCCAATCTAAGATC-GAATC-AGACCGGGTGTTATGGCAACAGGATTGGTAGCATA-CAGAG
582 ATTCCCAGTCTAAGATCAG-ACCGA-ACTGAGAGTTACGGTAGCAGGATCGGCAGCA-AGCAGAG
* * ** * * *
16212391 GGGGACCTGGTCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGGCTGAGCGTCTGTACGCTC
644 GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * **
16212456 ATTTCATGGGTTGACTTAGACAGACAGAGTTTTTTCCCAGTCTAAGCATACGGAGTTCATTCCCA
709 ATTTCATGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * * *
16212521 ATCTAAGATCAGACCAGACCGAGGGTTGC-GGAGCACATGCTGGGCTCGAGCATGTGCTGGTACC
774 GTCTAAGATCAGAACGGA-CGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * ** * *
16212585 ACATTTTTCATCGTCGGGGCACCAACATTGGAGCATCGCCGGAGAACCTGA-CAGGCAGCATTC
838 ACATTTTTCTTCATCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCA-GCGGCATTA
* * * *
16212648 GGGTTCCGACGATCGGGGGGGCTGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
1 GGGTTCCGGCGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * * *
16212713 CCCTTATACTGGCCCCCTATCCCTAATCGAACCACGAGAACTCACACCCCCTTAAAGAGCATTTG
66 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * *
16212778 AGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATTGGGTCACTTTTTTCAAATG
131 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
16212843 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
196 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * * * *
16212908 AGGATCACGTCTACTACGTTTGGGGACAAAACACCTT-CAAAACAAATTTTAAAAAATCCTGTAC
261 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA-AAATTTTAAAAAATCCCGAAC
* * ** *
16212972 CGCAAAAACTTTTGAAAATCGTGAAAAATTACGAACGAGTCGTCTTACCATGAAACTTCACGTGA
325 CGCAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* **
16213037 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACATGCAGAAATATGA
390 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
* * *
16213102 AGATGTGCCTAAACCCACCTACAACCCAATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCG
455 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
*
16213167 GCGTAGTGCCCGCCCGCTCGTCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
520 GCGTAGTGCCCGCCCGCTCG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * *
16213232 TCCCAGTCTAAGATCAGACCGAATTGAGAGTTACGGTAGCAGGATCGGCAGCACGTAGAGGAGAA
584 TCCCAGTCTAAGATCAGACCGAACTGAGAGTTACGGTAGCAGGATCGGCAGCAAGCAGAGGGGGA
* * ** * *
16213297 CCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGTACCCGCATGCTCGTTTC
649 CCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTC
* * *
16213362 GTGGGTTGGCTTAGGCATACGGAGTTAATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
714 ATGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * *
16213427 AGATCAGATCGGATCGAGTGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATT
779 AGATCAGAACGGA-CGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATT
*
16213492 TTTCTTCATCGGGGCACCATCGCTGGAGCATCGTCGGAGAACCTGACCAGCGGCATT-
843 TTTCTTCATCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCAGCGGCATTA
* * * *
16213549 GTGGCTCTGGTGATC-GGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTG
1 G-GGTTCCGGCGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * * *
16213613 GCCCTTAT-TTGGCCCGCTATCCTTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCATTT
65 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * *
16213677 GAGATTTTACAGGTTTGCTGCGAGTAGCCATTAAAGTGTCCGAAATGGGGACATTTTTTTCAAAT
130 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * *
16213742 GGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAATATAC
195 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* *
16213807 AAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
260 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
* * *
16213872 CACAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCGCGTGA
325 CGCAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * **
16213937 TGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCAATGGCACGTAGAAATATGA
390 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
* ** *
16214002 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTATGCATCCCGTCTCTCTGGTCG
455 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
*
16214067 GCGTAGTGTCCGCCCGCTCG
520 GCGTAGTGCCCGCCCGCTCG
16214087 TTTCGTTGAT
Statistics
Matches: 2048, Mismatches: 258, Indels: 70
0.86 0.11 0.03
Matches are distributed among these distances:
892 4 0.00
893 459 0.22
895 6 0.00
896 38 0.02
897 5 0.00
899 1 0.00
900 415 0.20
901 273 0.13
902 94 0.05
903 2 0.00
904 1 0.00
907 51 0.02
908 204 0.10
909 7 0.00
912 18 0.01
913 6 0.00
914 1 0.00
915 367 0.18
916 96 0.05
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (900 bp):
GGGTTCCGGCGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACC
GCAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
CGTAGTGCCCGCCCGCTCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACCGAACTGAGAGTTACGGTAGCAGGATCGGCAGCAAGCAGAGGGGGACC
CGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCAT
GGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
ATCAGAACGGACGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTT
CTTCATCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCAGCGGCATTA
Found at i:16214911 original size:26 final size:26
Alignment explanation
Indices: 16214875--16214927 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16214865 GTTGACTTAG
16214875 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16214901 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16214927 G
1 G
16214928 ACCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16217546 original size:26 final size:26
Alignment explanation
Indices: 16217516--16217568 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16217506 GTTGACTTAG
16217516 GCATACAGAGTTCATTC-CTAGTCTAA
1 GCATACAGAGTTCATTCAC-AGTCTAA
*
16217542 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
16217568 G
1 G
16217569 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:16218608 original size:898 final size:883
Alignment explanation
Indices: 16214157--16219977 Score: 6233
Period size: 898 Copynumber: 6.6 Consensus size: 883
16214147 CCGACAATTA
* ***
16214157 GGGGGGCC-GGGCGG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTTT
1 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
16214220 CCCCTATCGCTCATCAAACCTCGAGAACTCACACGCCCCTTCAAGAGCATTTGAGATTTTACAGG
66 CCCCTATCCCTCATCAAACCTCGAGAACTCACAC-CCCCTTAAAGAGCATTTGAGATTTTACAGG
* * * *
16214285 TTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAACTGT
130 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
16214350 TGTACAATTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAATATACAAGGATCACATCT
195 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCT
* * * ** * ** *
16214415 ACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAAGTTTAAAAAATCTTGAAACGTAAAAAGTTTT
260 ACCAAGTTTGGGGCCAAAACTCCTTCCCAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTC
* *
16214480 GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
325 AAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * * *
16214545 CATTGTATGAATTTACTAGCCATAAAAATGGCATTGGCACGCAGAAATTTGAAGATGTGACTAAA
390 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * *
16214610 CCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGC
455 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC-GGTCGGCGTAGTGCC-G-
* *
16214675 CCGCCCACCCGGCCGCTCGCTTGT-TTCGCCGATCGACTTAGGCATACGGAGTTCATTCCCAGTC
517 CCG----CCC-GCCG-TCG-TT-TCATCG--G-T-GGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * ** * *
16214739 TAAGATTAGACCAGACCAAAGGTTGC-GACAGCAGGATCGACAGCATGCAGAGGGGGACCCGATC
570 TAAGATCAGACCAGACCGAGGGTTGCAG-TAGCAAGATTGGTAGCACGCAGAGGGGGACCCGACC
* * * * * * ** * * *
16214803 GATCCTCGACTGGCGTATCATGCCTCTCTGGCCGGTTGAGCGCCCGCACGCTCCTTTCGTGGGTT
634 GATCCCCGACTTGTGCATC-CGCCCCTCT-GCCGACTGAGCGCCCGTACG--CCGTTCATGGGTT
*
16214868 GACTTAGGCATACGGAGTTC-ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGACCG
695 GACTTAGGCATAC-GAGTTCGA-TCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCG
* * * * * *
16214932 GATCA-GACCGA-GGAT-CGG-A--TC--G-AGGGCTCGAGCATGTGTTGGTGCCACATTTTTCT
757 GACCACGA-C-ATGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTG-C-CATTTTTCT
* * * ** * *
16214988 TCGTCGGGGCATCATCGCTAGAGCATCG-CCGTAGAACCTGACCGACGGCATTGGGGTTCC-GAT
818 TCGCCGAGGCACCATCGCCGGAGCATCGTCAG-AG-ACCTGATCGACGGCATTGGGGTTCCGGA-
16215051 GATC
880 GATC
** * *
16215055 AGGATGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCTTTATATTGG
1 -GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
** *
16215119 CCCCCTATCCCTCATCAAATTTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
65 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
16215184 TTTGCGGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
130 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCT
*
16215249 TGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
195 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCT
* ** * * * * * *
16215313 ACCAAGCTTGGTACCGAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAATCGCCAAAAGTTTC
260 ACCAAGTTTGGGGCCAAAACTCCTTCCCAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTC
* * * *
16215378 AAAAATTGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGAC
325 AAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
16215443 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAA
390 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * *
16215508 CCCACCTACCA-CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGCGCCCGC
455 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC-GGTCGGCGTAGTG-CCGC
*
16215572 TCGCCCGTTCATCTGCCTGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGCTCATTCCCAGTCT
518 -CGCCCG--C--C-G--T-C--GTTTCATCGG-TGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * **** * *
16215637 AAGATCAGATCGGACTGAGGGTTG-GGTAGCAGGATCAACAGCATGCAGAGGGGGACCC-AGTCG
571 AAGATCAGACCAGACCGAGGGTTGCAGTAGCAAGATTGGTAGCACGCAGAGGGGGACCCGA-CCG
* * * * * *
16215700 A-CCCCCATCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAAGCTCATTTCGTGGGTT
635 ATCCCCGA-CTTGTGCAT-CCGCCCCTCT-GCCGACTGAGCGCCCGTACGC-C-GTTCATGGGTT
* * * *
16215764 GACTTAGGCATACAGAGTTC-ATTCCCGGTCTAAGCATACAGAGTTCATTCCCAGTCCAAGATCA
695 GACTTAGGCATAC-GAGTTCGA-TCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCG
* * * * *
16215828 GACCA-GACCGAGGGTTACGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCTGCATTTTTCT
757 GACCACGA-C-ATGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGC--CATTTTTCT
* * * ** *
16215892 TCGTCG-GGGACCATCGCC---G----G--AGA-ACCTGACCGACGATATTAGGGTTCC-GACGA
818 TCGCCGAGGCACCATCGCCGGAGCATCGTCAGAGACCTGATCGACGGCATTGGGGTTCCGGA-GA
16215945 TC
882 TC
* *
16215947 GGGGGTGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGG
1 GGGGG-GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
16216012 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGTGCATTTAAGATTTTACAGG
65 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * * * *
16216077 TTTGCTTCCAGTAGCCATTCAAGTGTCTAAAATGGGGACACTATTTTCAAATGGTCACAAAATCT
130 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * *
16216142 TGTACACTTCGAGTTTTTAACTGAATTTTTTTGTGCAGGCCAAAAAAAATACAAGGATCACGTCT
195 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCT
** * * * *
16216207 ACCAAGTTTGTTGCCAAAACTCCTTCCGAAAAAATTTTAAAGAATCTCGAACC-CAAAAAGTTTT
260 ACCAAGTTTGGGGCCAAAACTCCTTCCCAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTC
** * *
16216271 GGAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
325 AAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * * * *
16216336 CATTGTATGAATTTACAAGCCATAAAAATGCCATTAGCACGTAGAAATATGAACATGTGCCTAAA
390 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * * ** *
16216401 CCCACTTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTTTTCGGTCGATGTACTGCTCGC
455 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC-TCTCGGTCGGCGTAGTGC-CG-
* * ** **
16216466 CCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATT-CTGGTCTAAGATTGG
517 CCGCCCG-CCG-TCGTTTCATCGG-TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* ** * ** * * * *** * *
16216530 ACCAGACTGAGGGTTGTGGCAATAGGATCGGCAGCACGCA-AGGGGGACCCGGTAGATCCCTGGC
579 ACCAGACCGAGGGTTGCAGTAGCAAGATTGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGAC
* * **
16216594 TTGCGCATCCCGCCCCTCTGGTCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCA
644 TTGTGCAT-CCGCCCCTCT-GCCGACTGAGCGCCCGTACGC-CG-TTCATGGGTTGACTTAGGCA
*
16216659 TACGGAGTTC-ATTCCCAGTCTAAG-AT-C--AG---A---C---C----A---GA-C-CG--AG
705 TAC-GAGTTCGA-TCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCGGACCACGACAT
* * *
16216699 GGTTGCAGCT-GCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCAC
768 GGTTGC-GGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC--ATTTTTCTTCGCCGAGGCAC
* * ** *
16216763 CATCGTCGGAG-AACGT----GACC-G---G-CGGCATTATGGTTCTGGAGATC
830 CATCGCCGGAGCATCGTCAGAGACCTGATCGACGGCATTGGGGTTCCGGAGATC
*
16216807 GAGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATCG
1 G-GGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
16216872 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAATAGCATTTGAGATTTTACAG
64 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
16216937 GTTTGCTGCCAGTACCCATTAAAGTGTCTGAAATAGGGATACTTTTTTCAAATGGTCACAAAATC
129 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATC
* * * *
16217002 TTGTACACTTTGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTG
194 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATC
** * ** *
16217067 TAAAAAGTTTGGGACCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
259 TACCAAGTTTGGGGCCAAAACTCCTTCCCAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTT
**
16217132 TGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
324 CAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
16217197 CCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
389 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * * **
16217262 ACCCACCTACCACCCTATCGATCCACGGCCTGCGCATCCCATCTCTCTGTTCAACGTAGTGCCCG
454 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC-GGTCGGCGTAGTG-CCG
16217327 TCCGCCCG-C-TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
517 -CCGCCCGCCGTCGTTTCATCGG-TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * * ** *
16217390 CCAAACTGAGGGTTTCAGTAGTAGGATCGGTAGCACACAGAGGGGGACCCGGTCGATCCCCGGCT
580 CCAGACCGAGGGTTGCAGTAGCAAGATTGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGACT
** * * * *
16217455 TGCACATCTCGCCCCTCTGGTCGACTAAGCGCCCATACGCTCGTTTCGTGGGTTGACTTAGGCAT
645 TGTGCATC-CGCCCCTCT-GCCGACTGAGCGCCCGTACGC-CG-TTCATGGGTTGACTTAGGCAT
* *
16217520 ACAGAGTTC-ATTCCTAGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCAGACCA-GACCG
706 AC-GAGTTCGA-TCCCAGTCTAAGCATACGGAGTTCATTC-CAGTCTAAGATCGGACCACGA-C-
* * * * *
16217583 ATGGTTGCAGTAGCACATGGTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGTGGCA
766 ATGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTG-C-CATTTTTCTTCGCCGAGGCA
* * * * * *
16217648 CCATCGCCGGTGCATTGTCGGATAACCTGACCAACGGCATTGGGGTTCC-GATGATC
829 CCATCGCCGGAGCATCGTCAGA-GACCTGATCGACGGCATTGGGGTTCCGGA-GATC
* *
16217704 GGGGGGCTGGGGTGGGGTGTGCGCACTTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
1 GGGGGGC-CGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* **
16217769 GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCGGTTGAGATTTTACAG
64 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
16217834 GTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAATAGGGACACTTTTTTTCAAATGGTCACAAAAT
129 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACAC-TTTTTTCAAATGGTCACAAAAT
* * *
16217899 CTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCTTGCCAACAAAAATACAAGGATCACAT
193 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACAT
* * *
16217964 CTACCAAGTTTGGGGCCAAAACTCCTTCCCAAAAAATTTTAAAAAATTCCTAACCACAAAAAATT
258 CTACCAAGTTTGGGGCCAAAACTCCTTCCCAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTT
* * *
16218029 GT-GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGG
323 -TCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* *
16218093 GACCATTATATGAATTTGCAAGCCAT-AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
387 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* *
16218157 -AACCCACCTACAACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCAGGCGCGGCGTAGTGC
452 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC-GG-TCGGCGTAGTGC
16218221 CGCCGCCCGTCCGTCGTTTCATCGGTAGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
515 CGCCGCCCG-CCGTCGTTTCATCGGT-GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * *
16218286 GACCGGACCAAGGGTTGCAGTAGCAAGATTGGTAGCACGTAGAGGGGGACCCTACCGAT-CCTGA
578 GACCAGACCGAGGGTTGCAGTAGCAAGATTGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGA
16218350 CTTGTGCATCCGCCCCTCTGCCGACTGAGCGCACCGTACGCCGTTCATGGGTTGACTTAGGCATA
643 CTTGTGCATCCGCCCCTCTGCCGACTGAGCGC-CCGTACGCCGTTCATGGGTTGACTTAGGCATA
16218415 CCGATGTTCGATCCCAGTCTAAGCATACGAGAGTTCATTCCTAGTCTAAGATCGGACCACGACAT
707 -CGA-GTTCGATCCCAGTCTAAGCATACG-GAGTTCATTCC-AGTCTAAGATCGGACCACGACAT
* * *
16218480 GGGTTGGTGGTAGC-CATGCTGGGCTCGGGCATGTGCTGGTGTCACAATTTTTCTTCGCCAAAGC
768 -GGTT-GCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTG-C-C-ATTTTTCTTCGCCGAGGC
** * *
16218544 A-CATCTGCCGGAGCATCCACCAGAGACCTGATCGACGGCATTGGGGGTCCGGCGATC
828 ACCATC-GCCGGAGCAT-CGTCAGAGACCTGATCGACGGCATTGGGGTTCCGGAGATC
* *
16218601 AGGGGGGCCCGGGGGGTGGTGCGCACATGATGTGGCGATGGCGGTGATGGTACTTGGCCCTTATA
1 -GGGGGGCCGGGGGGGT-GTGCGCACATGATGT-GCGAT-G-GGTGCTGGTACTTGGCCCTTATA
* *
16218666 TTGGCCCCCTATCCCCCCTCATCAAACCTCGAGAACCCCTTTCA-ACCCTCTTAAAGTGCATTTG
61 TTGGCCCCCTAT---CCCTCATCAAACCTCGAGAA---C--TCACACCCCCTTAAAGAGCATTTG
* * * *
16218730 AGA-TTTACGGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATT
118 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATG
* * *
16218794 ATCAC-AAATCTTGTACACTTCAAGTTTTTAGCTGCATTTTTTTTGTGCATGCCAACAAAAATAC
183 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTTGTGCATGCCAACAAAAATAC
* * * *
16218858 AAGGATCACGTCTACCAAGTTTGGGGCCAAAAACTCCTT-CCGAGAAACTTTAAAAAATCCCGAA
247 AAGGATCACATCTACCAAGTTTGGGGCC-AAAACTCCTTCCCAAAAAATTTTAAAAAATCCCGAA
* * *
16218922 CCGCAAAAAGTTTCAAAAAATCGTGAAAAATAG-AAACGAGTCGTCTTGACATGAAACTTCACGT
311 CCACAAAAAGTTTC-AAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGT
* * *
16218986 GAAGGC-TAAGGGAACATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCACGTAGAAATAT
375 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
* *
16219049 GAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGT
440 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC-GGT
* * * *
16219114 TGGCGTAGTGCTCGCC-CAC-CCGTTGGTTTCATCGGCTGGCTTAGGCACACGGAGTTCATTCCC
504 CGGCGTAGTGC-CGCCGCCCGCCG-TCGTTTCATCGG-TGGCTTAGGCATACGGAGTTCATTCCC
* * * * * * *
16219177 AGTCTAAGATCAAATCAGACCGAGGGTTGTAGGAGCAAGATTAGCAGCACGCAGA-GGGGCCCCG
566 AGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAAGATTGGTAGCACGCAGAGGGGGACCCG
* * * * * * *
16219241 ACCAATCCCCAAATTATGCATCC-CAACCTTCTGACCGGCTGAGCGCCCG--CG-CGCTCAT---
631 ACCGATCCCCGACTTGTGCATCCGC--CCCTCTG-CCGACTGAGCGCCCGTACGCCGTTCATGGG
* * *
16219299 TT--C----G--T--GGGTT-GA---C--T-TAGGCATACGGGGTTCATTCCCAGTCTAAGATCG
693 TTGACTTAGGCATACGAGTTCGATCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCG
* ** *
16219347 GACCGGACCGA-A-GGTTACGACAGCACATGCTGGGCTCGGGCATGTGTTGAG-GCCGTATTTTT
757 GACC--A-CGACATGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTG-GTGCC--ATTTTT
* * * * * * *
16219409 CTTC-CCTGGGGCACCGTCACCGGAGCATCGTCAGAGAACCTGATCGGCAGTATTGGGGTTCTGG
816 CTTCGCC-GAGGCACCATCGCCGGAGCATCGTCAGAG-ACCTGATCGACGGCATTGGGGTTCCGG
*
16219473 AGATG
879 AGATC
* * *
16219478 GGAGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGGCCATATATTGG
1 GG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
16219543 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGGATTTGAGATTTTATAGG
65 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * *
16219608 TTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCT
130 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * *
16219673 TGTACACTTCGAGTTTTTAGCTGCATTTTTTTGTGCATGCAAAAAAAAATTCAAGGATCACATCT
195 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCT
* **
16219738 ACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAA-CAGCAAAAAGTTT
260 ACCAAGTTTGGGGCCAAAACTCCTTCCCAAAAAATTTTAAAAAATCCCGAACCA-CAAAAAGTTT
* * *
16219802 CAAAAATCGTGAAAAATAGAAAAAGTGTCATCTTGCCATG-AACTTGACGTGAAGGCTTAAGGGA
324 CAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
16219866 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCAAGCAGAAATATGAAGATGTGCCTAA
389 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
*
16219931 ACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCCCGTCTCTC
454 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
16219978 TAGTAGGCGT
Statistics
Matches: 4286, Mismatches: 467, Indels: 369
0.84 0.09 0.07
Matches are distributed among these distances:
857 1 0.00
858 35 0.01
859 94 0.02
860 133 0.03
861 289 0.07
862 189 0.04
863 4 0.00
864 5 0.00
865 6 0.00
866 64 0.01
867 190 0.04
868 109 0.03
870 20 0.00
871 2 0.00
873 32 0.01
874 3 0.00
875 5 0.00
876 26 0.01
877 65 0.02
878 57 0.01
879 12 0.00
880 3 0.00
881 7 0.00
882 3 0.00
883 1 0.00
884 2 0.00
885 121 0.03
886 116 0.03
887 5 0.00
888 2 0.00
889 2 0.00
890 2 0.00
891 4 0.00
892 35 0.01
893 342 0.08
894 154 0.04
895 56 0.01
896 293 0.07
897 399 0.09
898 566 0.13
899 130 0.03
900 114 0.03
901 8 0.00
902 18 0.00
903 124 0.03
904 149 0.03
905 194 0.05
906 73 0.02
907 19 0.00
908 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (883 bp):
GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTA
CCAAGTTTGGGGCCAAAACTCCTTCCCAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCA
AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCGGTCGGCGTAGTGCCGCCGC
CCGCCGTCGTTTCATCGGTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
CGAGGGTTGCAGTAGCAAGATTGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGTGCA
TCCGCCCCTCTGCCGACTGAGCGCCCGTACGCCGTTCATGGGTTGACTTAGGCATACGAGTTCGA
TCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCGGACCACGACATGGTTGCGGTAGCA
CATGCTGGGCTCGGGCATGTGCTGGTGCCATTTTTCTTCGCCGAGGCACCATCGCCGGAGCATCG
TCAGAGACCTGATCGACGGCATTGGGGTTCCGGAGATC
Found at i:16220970 original size:26 final size:26
Alignment explanation
Indices: 16220941--16220993 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16220931 GTTGACTTAG
* * *
16220941 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTAATTCCCAGTCTAA
16220967 GCATACGAAGTTAATTCCCAGTCTAA
1 GCATACGAAGTTAATTCCCAGTCTAA
16220993 G
1 G
16220994 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTAATTCCCAGTCTAA
Found at i:16221798 original size:26 final size:26
Alignment explanation
Indices: 16221762--16221814 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16221752 GTTGACTTAG
16221762 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
16221788 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16221814 G
1 G
16221815 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16223572 original size:26 final size:26
Alignment explanation
Indices: 16223542--16223594 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16223532 GTTGACTTAG
*
16223542 GCATACGAAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
16223568 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16223594 G
1 G
16223595 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16224136 original size:892 final size:890
Alignment explanation
Indices: 16221085--16226091 Score: 6120
Period size: 903 Copynumber: 5.6 Consensus size: 890
16221075 ATCATGTGCG
* *
16221085 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAGCTCACAC
1 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
16221150 CCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAACTGTCTGAAATGG
66 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
**
16221215 GGACACTTTTTTCAAATTTTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
131 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
* * * * **
16221280 CATACCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCTAAAACTCCTTTTGAAAAAAT
196 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
** * *
16221345 TTTAAAAAATATCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGC
261 TTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
16221410 CATGAAACTTCATGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
326 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
16221475 GG-CATGCAAAAATATGAAGATGTGCCTAAAGCCACCTACCACCTTATCGATCCACGGCTTGCGC
391 GGACAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
16221539 ATCCCGCCTCTCTGGCCGACGTAATGCCCGCCCG--C-C-CGCCCACTCGTTTCATCAGTTGGCT
454 ATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCTCGCCCACTCGTTTCGTCAGTTGGCT
** * ** ** * **
16221600 TAGGCATACGGAGTTCATTCATAGTCTTAGATTGGACC-GAACTGAACGTTAC-AGCAGTAGGAT
519 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCTA-CAACAGGAT
* * * *
16221663 CGATAGCACGCAGAGGGGGACCCGACCGGTCCCTGACTTGTGCATCCCGCCCCTTTGGCCGGCTA
582 CGATAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTA
* * * * * *
16221728 AGCACCCGTATGCTTC-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCAT
647 AGCGCCCGCACGC-TCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCAT
* * * *
16221792 ACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCACATGCTAGGCTCG
711 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * *
16221857 GGCATGTGCTGCTGTCGCA--TTT-TT-------C-T--TCGTCAGAGAACCTGACCGGCGGCAT
776 AGCATGTGCTGGTGTCGCATTTTTCTTCCCGGGGCATCATCGTCAGAGAACCTGACCGACGGCAT
16221909 TGGGGTTCCGACGAT-AGAGAGGG-CTGGGGGGTGTGCGCACATGATGTG-C
841 TGGGGTTCCGACGATCAGAG-GGGTC-GGGGGGTGTGCGCACATGATGTGTC
* * * *
16221958 GATGGTTGCTGGCACTTGGCCTTTATATTGG-CCCCTGATCCCTCATCAAACCTTGAGAACTCAC
1 -ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT-ATCCCTCATCAAACCTCGAGAACTCAC
* * *
16222022 ACCCCCTTAAAGAGCATTTGAGATTTAACAAGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
64 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
16222087 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
129 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
* * *
16222152 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCCAAAAAA
194 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** * *
16222217 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAACAATAGAAAACGAGTCGTCTT
259 ATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
16222282 GCCATGAAACTTCACGTGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
324 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
16222347 TTGG-CATGCAGAAATATGTAGATGTCCCTAAACACACCTACCACCCTGTCGATCCACGGCTTGC
389 TTGGACAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ** ** * * *
16222411 GCATCCCGTCTCTCTGGTCGATGCAGTGCCCGTACTTCCGCCCGCCCGCTCGTTTCGTCGGTTGG
452 GCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCTCGCCCACTCGTTTCGTCAGTTGG
** *
16222476 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACCAAGGGTTG-TGACAGCAGG
517 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCT-ACAACAGG
* * * * * * * * *
16222539 ATCGACAGCACGCAGAGGGGGACCCGGCCAATCCTCGGCTTACGCATCCCGCCCCTCTAGTCGGT
580 ATCGATAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
16222604 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGAGTTAGGCATTCGTAGTTCATTCCCAGTCTAAGCA
645 TAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCA
* * * * * * * * *
16222669 TACAGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACGACAGCACATGCCGAGCTC
710 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * *
16222734 GAGCATGTGCTGGAGTCGTATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCACCGAAGAACC
775 GAGCATGTGCTGGTGTCGCATTTTTCTTC-CCGGGGCATCATCGTCAGAG-A--ACC--TG-ACC
*
16222799 TGACAGGCTGTATTGGGGTTCCGACGATCA-AGGGGTCGAGGGGGTGTGCGCACATGATGTGTG
833 -GAC-GGC---ATTGGGGTTCCGACGATCAGAGGGGTCG-GGGGGTGTGCGCACATGATGTGTC
* * *
16222862 ATGGGTGCTGGTACTTGGCCCTTATATCGACCCCCTATCCCTCATCAAACCTCGAGAAGTCACAC
1 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
16222927 CCCCTTGAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGG
66 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
16222992 GCACACTTTTATCAAATGGTCACAAAATCTTGTAAACTTTGAGTTTTTAGCTGAACTTTTTTGTG
131 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
** * * *
16223057 CATGTGAACAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
196 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * *
16223122 TTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTTGTCTTGC
261 TTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
16223187 CATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
326 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
16223252 GGAACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAACCACGGCTTGCGCA
391 GG-ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * * * *
16223317 TCCTGTCTCTTTGG-CTGACGTAGTGCCTGCCTGCCCGCTCACTCACTCGTTTTGTCGGTTGGCT
455 TCCCGTCTCTCTGGTC-GACGTAGTGCCCGCCCGCCCGCTCGCCCACTCGTTTCGTCAGTTGGCT
* *
16223381 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGCTACAACAGGATC-
519 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCTACAACAGGATCG
* * * * * * *
16223445 AGTAGCATGCAGAGGGGG-CTCAACCGATCCCCGACTTGCGTATCTCGCCCGTCTGGCCGGTTAA
584 A-TAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTAA
* * *
16223509 GCGGCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCATTCTAAGCATAC
648 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATAC
* * *
16223574 GGAGTTCATTCCCAGTCTAAGATTGGACCGAACCGAGGGTTGCGGTAGCACATGTTGGGCTCGAG
713 GGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAG
** * * *
16223639 CATGTGCTGGTGTCATATTTTTCTTCACCGAGGCATCATCGTCGGAGAACCTGACCGACGGTATT
778 CATGTGCTGGTGTCGCATTTTTCTTC-CCGGGGCATCATCGTCAGAGAACCTGACCGACGGCATT
* ** * *
16223704 GGGGTTTCGGTGATCAGTGGGGTCGGGGTGGGTGTACGCACATGATGTG-C
842 GGGGTTCCGACGATCAGAGGGGTC-GGG-GGGTGTGCGCACATGATGTGTC
16223754 ATTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
1 A-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
16223819 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATG
65 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
**
16223884 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAA-TTTTTTGT
130 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
* * *
16223948 GCATTCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCGAAACTCCATCCGAAAAAA
195 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
16224013 TTGTAAAAAATCCCGAACCACAAAAAGTTAT-AAAAATCGTGAAAAATAGAAAACGAGTCATCTT
260 TTTTAAAAAATCCCGAACCACAAAAAGTT-TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
** **
16224077 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTGATAAAAATATCA
324 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** *
16224142 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTATGACCCTATCGATCCACGACTTGCG
389 TTGG-ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
16224207 CATCCCGTCTCTTTGGTCGACGTAGTGCCCACCCGCCAGCTCGCCCACTCATTTCGTCAGTTGGC
453 CATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCTCGCCCACTCGTTTCGTCAGTTGGC
** * **
16224272 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACTGAGGGTTGCGGTAGTAC--GA
518 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGC--TACAACAGGA
* ** ** * ** * *
16224335 TCGGTAGCACATAGAGGGTAACCCGATCGATCATCGACTTACGCATCCCGCCCCTCTGGCTGGCT
581 TCGATAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
16224400 GAGCGCCCGCACGCTCGTTTTATGGGTTGACTTA-G-A-A-GCAGATCCATTCCCAGGTCTAAGC
646 AAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAG-TTCATTCCCA-GTCTAAGC
* * * * * * *
16224461 ATACGGAGTT-ATTTCCAGTCTAAGATC--ATCG-ACC-AGGGGTGCAGTAGCACATTCTGTGCT
709 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * ** * * *
16224521 C-AGCATGT-C-GGTGCCCCCATTTTTCTTCCCGTGCGGGCACCAAAC-AAAAAGAAACTGACAG
774 CGAGCATGTGCTGGTG-TCGCATTTTTCTTCCC--G-GGGCATC-ATCGTCAGAGAACCTGACCG
* * * * * * * *
16224582 GCAGCATTGGGGCTCCGATG-TC-G-GGTGGGCCGGGGGTGTGCACACATGATGTGTG
834 ACGGCATTGGGGTTCCGACGATCAGAGG-GGTCGGGGGGTGTGCGCACATGATGTGTC
* * *
16224637 ATGGGTGCTGGTACTTGGCCCTTATATTGG-TCCTTAT-CCTCATCAAATCTCGAGAACTCACAC
1 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
16224700 CGCCTTAAAGAGCATTTGAGATTTTGCAGG-TTGTTGCCAGTAGCCATTAAAGTGTCTAAAATGG
66 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
16224764 GGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
131 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
** * * *
16224828 CATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAAATCC-TCCCAAAAATT
196 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA-A
* * * * * *
16224891 TTTTAAAAAATTCTGATCCGA-AACAAG-TTCAAAAATCGTGTAAAATAGAAAACGAGTCGTCCT
260 TTTTAAAAAATCCCGAACC-ACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
16224954 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATACAAATGGCA
324 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
16225019 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
389 TTGG-ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * ** * *
16225084 CATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCACCCGTTCGCCCGTTCATTTCGTCGGTTGGC
453 CATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCTCGCCCACTCGTTTCGTCAGTTGGC
* * * **
16225149 TTAGGCATACGGAGTTCACTCCCAGTCTAGGATCAGACCAGACTGAGGGTTGTGGTA-GTC-GGA
518 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGG-T-TGCTACAACAGGA
* * * * * * *
16225212 TCGATAGCATGCAGAGGGGGACTCGATCGATCCCCGACTTGCTCATCCCACCCCTTTGGCCAGCT
581 TCGATAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
16225277 AAGCACCCGCACGCTCGTTCCATGGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGCA
646 AAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCA
* * *
16225341 TACGGAGTTCATTCCCAGTCTAAGATCGGACC-AGACCAAGGGTTGCAGCATCACATGCTGGGCT
710 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * *
16225405 TGGGCATGTGCTGG-GTCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAAC
774 CGAGCATGTGCTGGTGTCGCATTTTTCTTC-CCGGGG---CA---T-----CATCGTCAGAGAAC
* *** * * *
16225469 CTGACCGACAGCATTGCAATTCCGGCGATC-GGGAGGGTCGGGGGGTGTGCGCACATGATGTGTG
827 CTGACCGACGGCATTGGGGTTCCGACGATCAGAG-GGGTCGGGGGGTGTGCGCACATGATGTGTC
* * * *
16225533 ATGGGTGCTAGTACTTGGTCCTTATATTGGCCCCCCATCTCTCATCAAACCTCGAGAACTCACAC
1 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
16225598 CTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
66 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
16225663 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATGTTTTTT-T
131 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAT-TTTTTTGT
* * * *
16225727 GTATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATTCTGAAAAAA
195 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
16225792 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
260 TTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
16225857 CCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCACAAAAATGGCAT
325 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
16225922 TGGCACATATAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGC
390 TGG-AC--ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
16225987 GCATCCCGTCTCTCTGG-CTGACGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTTGTCAGTTG
452 GCATCCCGTCTCTCTGGTC-GACGTAGTGCCCGCCCGCCCGCTCGCCCACTCGTTTCGTCAGTTG
* *
16226051 GCTTAGGCATACAGAGTTCATTCCCTGTCTAAGATCAGACC
516 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
16226092 GGACCATCAG
Statistics
Matches: 3558, Mismatches: 463, Indels: 194
0.84 0.11 0.05
Matches are distributed among these distances:
873 5 0.00
874 436 0.12
876 3 0.00
877 346 0.10
878 358 0.10
879 73 0.02
880 82 0.02
881 9 0.00
882 49 0.01
883 17 0.00
884 38 0.01
885 28 0.01
886 57 0.02
887 7 0.00
888 3 0.00
889 4 0.00
890 25 0.01
891 34 0.01
892 375 0.11
893 260 0.07
894 30 0.01
895 9 0.00
896 58 0.02
897 7 0.00
898 55 0.02
899 44 0.01
900 57 0.02
901 68 0.02
902 299 0.08
903 566 0.16
904 153 0.04
905 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (890 bp):
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCTCGCCCACTCGTTTCGTCAGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCTACAACAGGATCGAT
AGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCG
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGA
GTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCAT
GTGCTGGTGTCGCATTTTTCTTCCCGGGGCATCATCGTCAGAGAACCTGACCGACGGCATTGGGG
TTCCGACGATCAGAGGGGTCGGGGGGTGTGCGCACATGATGTGTC
Found at i:16225341 original size:26 final size:26
Alignment explanation
Indices: 16225312--16225364 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16225302 GTTGACTTAG
16225312 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16225338 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16225364 G
1 G
16225365 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16226505 original size:26 final size:26
Alignment explanation
Indices: 16226476--16226526 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
16226466 GGTCCGATCA
16226476 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
16226502 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
16226527 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:16227928 original size:26 final size:26
Alignment explanation
Indices: 16227899--16227951 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16227889 CCGGTCCAAT
*
16227899 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16227925 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16227951 C
1 C
16227952 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16229268 original size:870 final size:868
Alignment explanation
Indices: 16226607--16231227 Score: 5252
Period size: 870 Copynumber: 5.3 Consensus size: 868
16226597 GCGGTTTGGG
* *
16226607 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTCTATTTTTGTTGGCATG
1 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
16226672 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
66 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * *
16226737 CCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTTAAATGCTCTTTAAGGGA
131 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
16226802 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGACAAGTACGAGCACCCAT
196 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * *
16226867 CACAAATCATGAGCGCACACCCCCCCCGACCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCA
261 CACACATCATGTGCGCACA--CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCA
* * * * * *
16226932 GGTTCTCCGACGATGCTCTGGCGATGGCGCCCCAACAAAGAAAATTACGGCACCAGCACATG-CT
324 GGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT-CGGCACCAGCACATGCCT
* * ** * * *
16226996 CGAGCCCAGCATGTGCTGCTGCAACCCTCAGTCCGATCTGATCTTACACTGGGAATAAACTTCGT
388 -GAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGT
* * * * * * *
16227061 ATGCCTAAGTCAATCGATGAGACGAGCGTGCGGGCGCTCAACCGGCCAAAGGGGCGGGATGCACA
452 ATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * ** * * *
16227126 AGCCTAGGATCGATCAGGTCCCCCTCTGGGTGCTACCGATCTTGCTATCGCAACCCTC-GATCTG
517 AGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTAT--CAACCCTCAG-TCTG
* * ** * * *
16227190 ATCTA-ATCTTAGGCTGGGAATGAACTTTGTATGCCTAAGCCAACCAACGAAAGGACCGGACGGG
579 GTC-AGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGG
* * * * * *
16227254 CGGGTGGGCACTACGTCGACCAGAGAGATGGGATGCGCAAGTCGTGGATCGATAGCGTGGTAGGT
643 AGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
16227319 GGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATACCATTTTTATGGTTTGTAAATTCATACA
708 GGGTTTAGGCACATCTTCATATTT-T-TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
16227384 ATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
771 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * *
16227449 TTTGAAACTTTTTACAGTTCGGGAGTTTTTAAA
836 TTTGAAACTTTTTACGGTTTGGGATTTTTTAAA
*** ** * ** * * **
16227482 ATTTTTTTTAAAAAATTTTTATCCCCAAACTTGGAAGATGTGATCCTTGTATTTTTGTTGGTGTG
1 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * * * *
16227547 CAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGAACATTTGAAAAAACTATCC
66 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
16227612 CCATTTCAGACACCTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
131 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
16227677 GTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACACAT
196 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * *
16227742 CGCACATCATGTGCGCACACCCCCCCG-CCCCCCGATGGCCGGAACCCCAATGCCGCCGGTCAGG
261 CACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
16227806 TTCT-C--CG--G-T-----GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGA
326 TTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT-CGGCACCAGCACATGCCTGA
* * *
16227860 GCCCAACATGTGCTGCCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
390 GCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCAA---T---CT-----T--A----G-A--
*
16227925 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
435 C-T-G----GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
* ** **
16227990 CGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCAATCC
494 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCTGATCC
* * * * *
16228055 TGGTGCTGCAACCCTCAAT-TCGGTCTGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCA
559 TGCT-AT-CAACCCTCAGTCT-GGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
16228119 ACCGACGAAACGAGC-GA---GTGGGTAGGCACTACACCGGCTAGAGATACGGGATGTGCAAGCC
621 ACCGACGAAACGAGCGGACGGGAGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
*
16228180 GTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTT
686 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTT-TGTGCCAATGCCATTT
* *
16228245 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCGTTCAGGTGAAGTTTCATGGCAAGACGAC
749 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * **
16228310 TCGTTTTGTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCAGGATTTTTTAAA
814 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAA
* * * *
16228365 ATTTTTTTGGAAGGATTTTTGG-TCC---C-------A--TGATCCTTGTATTTTTTTTGGCATG
1 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
*
16228417 CACAAAAAAATTCATCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
66 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * *
16228482 CTATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGG
131 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * * *
16228547 GTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAGTGCCAGAACCCAT
196 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * *
16228612 CACCCATCTTGTGTGCACACCCACCCGGCCCCCCCGATTGTCGGAA-CCCAATGCCGCCGGTCAA
261 CACACATCATGTGCGCACACCC-CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAG
* * * *
16228676 GTTCTCCGACGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATTGGCACCAGCACAAG-CTCA
325 GTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATCGGCACCAGCACATGCCT-G
* *
16228740 AGCCCAGCATGTGATGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTAT
389 AGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTAT
* * *
16228805 GCCTAAGTCAACCCATGAAATGAGCATACGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAG
454 GCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * *
16228870 CC-AGGGATCGGCCAGGTCCCCCTCTACGTGGTGCTGATCCTGCTATCATAACCTTCGGTCTGGT
519 CCGA-GGATCGGTCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTATC--AACCCTCAGTCTGGT
* * ** * *
16228934 CAGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCGATTCGATGAAACGAGCGGACGGGTGG
581 CAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGAGG
*
16228999 GTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGG
646 GTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
16229064 TTTAGGCACATCTTCATATTTTTCATGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGG
711 TTTAGGCACATCTTCATATTTTT-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
16229129 TCCCTTCAGCCTTCACGTGAAGTTTCATGGCATA-ACGACTCGTTTTTTATTTTTCACGATTTTC
775 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCA-AGACGACTCGTTTTCTATTTTTCACGATTTTT
* **
16229193 AAAACTTTTTGGGGTTTGGGATTTTTTAAA
839 GAAACTTTTTACGGTTTGGGATTTTTTAAA
* * *
16229223 ATTTTTTTGGAAGGAGTTTTGGGCCCAAA-TTGGTAGACGTGATCCTTGTACTTTTT-TTGGGAT
1 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCAT
* * * * *
16229286 TCACAAAAAAATTCAACTAAAAAATAGAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
65 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * *
16229351 CCCATTTCAGACACTTTAATGGCTACTAGCAACAAACCTGTAAAATCTCAAATGCCCTTTAAGGG
130 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
16229416 GGTGTGATTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
195 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
** * *
16229481 TTGCACATCATGTGCGCACACCCCCCGGCCCCTCCGATCATCGGAACCCCAATGCCGCCGGTCAG
260 TCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAG
* * * ** *
16229546 GTTCTCCGGCGATGCTTCGACGATGGCGCCCCGGTGAAGAAAAATACGGCACCAGCAGATGCCTG
325 GTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT-CGGCACCAGCACATGCCTG
* * * ** *
16229611 AGCCCAGCATGTGCTGCTGTAACCCTCGGTCTGATCTGATCTTAGACTTGGAATGAACTCCGTAT
389 AGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTAT
* * * * * * * ** * **
16229676 G-CTTAG---A--C-TGGGAATGAAC-TCCGTATGC-CTAAGTCAACC-CA----C--GAAACG-
454 GCCTAAGTCAACCCAT-GAAATGAGCGTGCG--GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * *
16229724 -AGCCGAGGATCGGTTGGGTCCCCCTCT--GTG-TGCTG--CC-G---T-AACCCTTAGTCAGGT
516 AAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTATCAACCCTCAGTCTGGT
* * * * * * * *
16229778 CCGATCTTAGACTGGAAATGAACTCTGTATGCTTAAGCCAACCGACAAAATGAGCGGGCGAGAGG
581 CAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGAGG
* *
16229843 GTGGGCACGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAAGGTGGTAGG
646 GT-GG---GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
16229908 T-GGTTTAGGAACATCTTCATATTTCTGCGTGCCAATGCCA--TTTATGGCTTGTAAATTCATAC
707 TGGGTTTAGGCACATCTTCATATTT-T-TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
** *
16229970 AATGGTCTTTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
770 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * *
16230035 TTTTGAAACTTTTTGCAGTTTGGGATTTTCTAAA
835 TTTTGAAACTTTTTACGGTTTGGGATTTTTTAAA
* *
16230069 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCACG
1 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* *
16230134 CACAAAAAAATTCATCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCC
66 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
16230199 CCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTTTAAAATCTCAAATGCTCTTTAAGGGG
131 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
16230264 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
196 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * * * **
16230329 CATACATCATGTGCGCATAACCCCCCCCGGCACCCCTGATCGCCGGAACCCCAATACCGTTGGTC
261 CACACATCATGTGCGC---ACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTC
** *
16230394 AGGTTCTCCGGTGATGCTCCGACGATGGTG---C--C-----AATA-CGGCACCAGCACATGCCT
323 AGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATCGGCACCAGCACATGCCT
*
16230448 GAGCCCAGCATGTGCTGCTGCAACCCTCGGTGTAGTCTGATCTTAGATTGGGAATAAACTCCGTA
388 GAGCCCAGCATGTGCTGCTGCAACCCTC---G--GTC----C--------GG-------TCC-AA
* * * * * *
16230513 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCCTGCAGGCGTTTA
428 T-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * * * *
16230578 GTCGGCCAGAGGGGCGGGATGCGAAAGTCGAGGATCGTTCGGGTCCCCCTCTAC---ATGCT-A-
492 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCTGAT
* *
16230638 -C--C-A-CAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
557 CCTGCTATCAACCCTCAGTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
16230698 CCGATGAAACGAGCGGGCGGGAGGGTGGGCACTCACTATGCCGGCCAGAGAGACGAGATGCGCAA
622 CCGACGAAACGAGCGGACGGGAGGGTGGGCACT-AC---GCCGGCCAGAGAGACGGGATGCGCAA
* * * * *
16230763 GCCGTGGATCAATAAGGT-GCAGGT-GGTTTAGGAACATCTTCATACTTCTATGTGCCAATGCCA
683 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TT-TTTGTGCCAATGCCA
*
16230826 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
746 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** * *
16230891 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGAGATTTTATAAA
811 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAA
* * * * *
16230949 ATTCTTTCAGAAGTAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTGTTGGCATG
1 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* *
16231014 CACAAAAAAATTCAGCTAAAAACTCGAAGTCTACAAGATTTTATGACCATTTGAAAAAAGTGTCC
66 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * * *
16231079 CCCTTTCAGACATTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGGAG
131 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
*
16231144 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCCAT
196 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
*
16231209 CGCACATCATGTGCGCACA
261 CACACATCATGTGCGCACA
16231228 TGCCTGGGAA
Statistics
Matches: 3221, Mismatches: 377, Indels: 294
0.83 0.10 0.08
Matches are distributed among these distances:
838 44 0.01
840 3 0.00
841 1 0.00
843 3 0.00
844 64 0.02
845 3 0.00
846 140 0.04
847 247 0.08
848 67 0.02
850 65 0.02
851 2 0.00
853 6 0.00
854 5 0.00
855 171 0.05
856 25 0.01
857 2 0.00
858 150 0.05
859 84 0.03
860 1 0.00
861 71 0.02
862 4 0.00
863 3 0.00
864 32 0.01
865 19 0.01
866 3 0.00
867 4 0.00
868 3 0.00
869 24 0.01
870 510 0.16
871 105 0.03
872 58 0.02
873 6 0.00
874 3 0.00
875 258 0.08
876 3 0.00
877 7 0.00
878 41 0.01
879 146 0.05
880 369 0.11
881 50 0.02
882 26 0.01
883 220 0.07
884 3 0.00
886 3 0.00
887 166 0.05
888 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (868 bp):
ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
CACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
TTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATCGGCACCAGCACATGCCTGAG
CCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
CTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
GAGGATCGGTCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTATCAACCCTCAGTCTGGTCAGAT
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGAGGGTGGG
CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTTTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
TTTACGGTTTGGGATTTTTTAAA
Found at i:16229689 original size:26 final size:26
Alignment explanation
Indices: 16229651--16229703 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16229641 CTGATCTGAT
*
16229651 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16229677 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16229703 C
1 C
16229704 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16230525 original size:26 final size:26
Alignment explanation
Indices: 16230489--16230541 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16230479 GTAGTCTGAT
*
16230489 CTTAGATTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
16230515 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16230541 C
1 C
16230542 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16232178 original size:26 final size:26
Alignment explanation
Indices: 16232127--16232179 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16232117 CCGGTCCGAT
* *
16232127 CTTAGACTGTGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16232153 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16232179 C
1 C
16232180 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16232929 original size:26 final size:26
Alignment explanation
Indices: 16232900--16232952 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16232890 TCCGGTCGAT
*
16232900 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
16232926 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
16232952 C
1 C
16232953 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:16233826 original size:26 final size:26
Alignment explanation
Indices: 16233788--16233840 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16233778 CTGGTTCGAT
*
16233788 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
16233814 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
16233840 C
1 C
16233841 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16236289 original size:26 final size:26
Alignment explanation
Indices: 16236237--16236289 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16236227 CTGATCCGAT
* *
16236237 CTTAGAGTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
*
16236263 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCACATG
16236289 C
1 C
16236290 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:16238814 original size:11 final size:11
Alignment explanation
Indices: 16238782--16238815 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
16238772 AGGTTCTCTG
*
16238782 GCGATGCTCCG
1 GCGATGCTCCA
16238793 GCGATGCTCCA
1 GCGATGCTCCA
16238804 GCGATGCTCCA
1 GCGATGCTCCA
16238815 G
1 G
16238816 TGATAGTGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.15, C:0.35, G:0.32, T:0.18
Consensus pattern (11 bp):
GCGATGCTCCA
Found at i:16240443 original size:135 final size:135
Alignment explanation
Indices: 16240275--16240533 Score: 482
Period size: 135 Copynumber: 1.9 Consensus size: 135
16240265 GGTAAACACG
*
16240275 ATCCTTGTATTTTTCTTCGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
1 ATCCTTGTATTTTTCTTCGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
16240340 GTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACTTGGTA
66 GTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACTTGGTA
16240405 GATGT
131 GATGT
* * *
16240410 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAATTGTACAAGATTTT
1 ATCCTTGTATTTTTCTTCGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
16240475 GTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAAC
66 GTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAAC
16240534 CTGTAAAATC
Statistics
Matches: 120, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
135 120 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.32
Consensus pattern (135 bp):
ATCCTTGTATTTTTCTTCGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACTTGGTA
GATGT
Found at i:16241621 original size:26 final size:26
Alignment explanation
Indices: 16241570--16241622 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16241560 TTGGTTCGAT
* *
16241570 CTTAGACTGGGAATGAACTTCATATG
1 CTTAAACTGGGAATGAACTCCATATG
*
16241596 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
16241622 C
1 C
16241623 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:16242390 original size:26 final size:26
Alignment explanation
Indices: 16242361--16242413 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16242351 CTGATCCGAT
16242361 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16242387 CTTAGATTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16242413 C
1 C
16242414 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16243251 original size:26 final size:26
Alignment explanation
Indices: 16243209--16243261 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16243199 CTGGTTTAAT
*
16243209 CTTAGACTGAGAGTGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
16243235 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
16243261 C
1 C
16243262 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:16244146 original size:26 final size:26
Alignment explanation
Indices: 16244117--16244169 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16244107 CCTGTCCAAT
16244117 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16244143 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16244169 C
1 C
16244170 CAAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16245019 original size:26 final size:26
Alignment explanation
Indices: 16244990--16245042 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16244980 CCGGTCCGAT
16244990 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
16245016 CTTAGACTGGGAATGCACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
16245042 C
1 C
16245043 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:16245368 original size:869 final size:868
Alignment explanation
Indices: 16242778--16245754 Score: 3549
Period size: 908 Copynumber: 3.3 Consensus size: 868
16242768 TGCAATGCCA
* * *
16242778 TTTTTTAAAAGGATTTTTGG-CTGCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
1 TTTTTTAAAAGGAGTTTTGGTC-CCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGC
*
16242842 ACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
65 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
16242907 CATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
130 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * * * *
16242972 TGTGAGTTCTCGAGGTTTGATGAGGCATA-GGGGACCAACATAAAGGTCGACTACCAGCACCCAT
195 TGTGAGTTCTCGAGGTTTGATGAGGGATACGGGG-CCAATATAAGGGCCAAGTACCAGCACCCAT
* * * *
16243036 TGCACATCATGTGCGCACACCCCTCCCCCGGTCCCCCCGATCGCCGGAACCCTAATCCTGTCGGT
259 CGCACATCATGTGCGCACA---C-CCCCCGG-CCCCCCGATTGCTGGAACCCCAA---TG-C---
* * *
16243101 TAGATTCTTTGACGATGCTTCGACGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCATATGC
312 ------C---GACG--G--T---C-A-GGTTCTCCGAC---G----ATGCGGCACCAGCAAATGC
* * * * * ** *
16243166 CCGAGCCCAAAATGTGCTGTCGTAACCCTCGGTCTGGTTTAATCTTAGACTGAGAGTGAACTCCG
352 CCCAGCCCAGAATGTGCTATCGCAACCCTCGGTCCGGTCCAATCTTAGACTGAGAATGAACTCCG
* *
16243231 TATGCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCATGAAACGAGCG-AGTGGGCGC
417 TATGCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTA-CGGGCGC
* * * * ** *
16243295 CCAGCCGACCAAAGGGGCAGGATGCGCAAGCCGGGGATC-AGCCGGGTCCCCATCTACATATTGT
481 TCAGCCGACCAGAGGGG-AGGATGCACAAGCCGGGGATCGA-TCGGGTCCCC-TCTAGGTGTTGT
* * * ** * *
16243359 CGAT-CTGCTGTTGCAACCCTCAGT-CTGATCCAATCTTAGACAGGAAATGAACTCCGTATGCCT
543 CGATCCTGTTGCTGCAACCCTCAGTCCAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* *
16243422 AAGCCAACCGATGAAACGAGCGGACGGGCAGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGAC
607 AAGCCAACCGATGAAACGA---G-CGGGCAGGTGGGCGGGCGGGCACTATGCTGGCCAGAGAGAC
* * * *
16243487 GGGATGCACAAGCCATGGACCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCC
668 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
* * * *
16243552 TACCACTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTT
733 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * ** **
16243617 CATGGCAAGATGACTCGTTTTTTTATTTTTCACAATTTTTGAAACTTTTTACGGTTCAAGATTTT
798 CATGGCAAGATGACTC-ATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTT
16243682 TTAAAAT
862 TTAAAAT
* * * * * *
16243689 TTTTTCAAAAGGAGTTTTGG-CCCAAAACTTCGTAGATGTGATCCCTGTATTTTTTTTTTGGGAT
1 TTTTTTAAAAGGAGTTTTGGTCCC-AAACTTGGTAGACGTGATCCTTGTA--TTTTTCTTGGCAT
* * *
16243753 GCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAACTGTC
63 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * *
16243818 CCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTATAAAATCTCAAATGCTTTTTAAGGG
128 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
16243883 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
193 GGTGTGAGTTCTCGAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * *
16243948 TCGCACATCATGTGCGCACACCCCCCGGCCCCCCTGA-T-CATCAGAACCCCAATGCTGCCGGTC
258 TCGCACATCATGTGCGCACACCCCCCGGCCCCCC-GATTGC-T-GGAACCCCAATGCCGACGGTC
* * *
16244011 AGGTTCTTCGAGGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACGTGCC
320 AGGTTCTCCGACGATG---CGGC-A--------C--C--AG-CAAA--T-GC-CC--CA---GCC
* * * *
16244076 GAGTTCAGAATGTCCTATCGCAACCCTCGGTCCTGTCCAATCTTAGACTGGGAATGAACTCCATA
359 -----CAGAATGTGCTATCGCAACCCTCGGTCCGGTCCAATCTTAGACTGAGAATGAACTCCGTA
* * * *
16244141 TGCTTAGACTGGGAATGAACTCCATATGCCAAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCA
419 TGCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * * * *
16244206 GCCGGCC-GAGGGGCGAGATGCTCAAGCCAGGGATCGGAT-GGGTCCCAAT-TTGCGTGTTGCCG
484 GCCGACCAGAGGGGAG-GATGCACAAGCCGGGGATC-GATCGGGTCCC-CTCTAG-GTGTTGTCG
* * * *
16244268 AACCTGTTACTACAGCCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
545 ATCCTGTTGCTGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
16244333 CCAACCGATGAAACGAGCGGGCGGGCGGGCGGGCGGGCGCAC-ATTACGTCGGCCAGAGAGACGG
610 CCAACCGATGAAACGAGCGGGCAGGTGGGCGGGC-GG-GCACTA-TGC-T-GGCCAGAGAGACGG
* * ***
16244397 GATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGTACATCTTCATATTTCTATGTG
670 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
*
16244462 CCAATGCCATTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
735 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
16244527 TGGCAAGATGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTA
800 TGGCAAGATGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTA
16244592 AAAT
865 AAAT
* *
16244596 TTTTTTGAAAGGAGTTTTGGTACCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCA
1 TTTTTTAAAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCA
* * * * * *
16244661 CAAAACATTTCAGCTAAAAAGTCGTAGTGTACAAAATTTTGTGACTATTTGAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
16244726 ATTTCAGACACTTTAATGGCTACTTGCAGCAAACCTGTCAAATCTCAAATGCTCTTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
16244791 GTGAGTTCTCGAGCTTTGATGAGGGATA-GGGGCCAATACAAGGGCCAAGTACCAGCACCCATCG
196 GTGAGTTCTCGAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
*
16244855 CACATCATGTGCGCACACCCCCTCGGCCCACCGATTGCTGGAACCCCAATGCCGACGGTCAGGTT
261 CACATCATGTGCGCACACCCCC-CGGCCCCCCGATTGCTGGAACCCCAATGCCGACGGTCAGGTT
* *
16244920 CTCCGACGATGCGGCACCAGCACATGCCCCAGCCCAGCATGTGCTATCGCAACCCTCGGTCCGGT
325 CTCCGACGATGCGGCACCAGCAAATGCCCCAGCCCAGAATGTGCTATCGCAACCCTCGGTCCGGT
* * *
16244985 CCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGCACTCCGTATGCCTAAGTC
390 CCAATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCAAAGTC
*
16245050 AACCCACGAAACGAGCGTACGGGCGCTCAGCCGTCCAGAGGGGATGGATGCACAAGCCGGGGATC
455 AACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCAGAGGGGA-GGATGCACAAGCCGGGGATC
* * *
16245115 GATCGGGTCACCCTCTAGGTGCTGTCGATCCTGTTGCCGCAACCCTCAATCCAGTCTGATCTTAG
519 GATCGGGTC-CCCTCTAGGTGTTGTCGATCCTGTTGCTGCAACCCTCAGTCCAGTCTGATCTTAG
* * *
16245180 ACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACGAGCGGGC-GGTGGGCGGGCGGGC
583 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCAGGTGGGCGGGCGGGC
* *
16245244 ACTATGCTAGCCAGAGA-AGCGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
648 ACTATGCTGGCCAGAGAGA-CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
16245308 GCACATCCTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
712 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
16245373 CTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAC
777 TTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTCAAAAC
** *
16245438 TTTTTGTGGTTTGGGATTTTTTAAAA-
842 TTTTTACGGTTCGGGATTTTTTAAAAT
* * ** * *
16245464 TTTTTCAGAAGGAGTTTCAGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTCTTGGCATGCA
1 TTTTTTAAAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCA
* *
16245529 CAAAACAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
16245594 ATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
16245659 GTGAGTTCTTGAGGTTTGATGAGGGATACAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
196 GTGAGTTCTCGAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* *
16245724 TACATCATGTGCGCACAACCCCCCCGCCCCC
261 CACATCATGTGCGCAC-ACCCCCCGGCCCCC
16245755 TATCGTCAGA
Statistics
Matches: 1797, Mismatches: 205, Indels: 170
0.83 0.09 0.08
Matches are distributed among these distances:
868 205 0.11
869 249 0.14
870 7 0.00
871 6 0.00
872 3 0.00
873 132 0.07
874 114 0.06
875 5 0.00
877 3 0.00
878 3 0.00
880 4 0.00
881 4 0.00
883 2 0.00
884 9 0.01
885 2 0.00
886 1 0.00
887 2 0.00
888 2 0.00
889 2 0.00
890 1 0.00
891 2 0.00
892 1 0.00
893 5 0.00
894 2 0.00
896 1 0.00
897 2 0.00
898 2 0.00
900 2 0.00
901 4 0.00
903 3 0.00
904 106 0.06
905 172 0.10
906 10 0.01
907 126 0.07
908 330 0.18
909 20 0.01
910 2 0.00
911 41 0.02
913 206 0.11
914 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (868 bp):
TTTTTTAAAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCA
CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
GTGAGTTCTCGAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
CACATCATGTGCGCACACCCCCCGGCCCCCCGATTGCTGGAACCCCAATGCCGACGGTCAGGTTC
TCCGACGATGCGGCACCAGCAAATGCCCCAGCCCAGAATGTGCTATCGCAACCCTCGGTCCGGTC
CAATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCA
ACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCAGAGGGGAGGATGCACAAGCCGGGGATCGA
TCGGGTCCCCTCTAGGTGTTGTCGATCCTGTTGCTGCAACCCTCAGTCCAGTCTGATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCAGGTGGGCGGGCGGGCACT
ATGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTT
TACGGTTCGGGATTTTTTAAAAT
Found at i:16250261 original size:26 final size:26
Alignment explanation
Indices: 16250205--16250255 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
16250195 GGTCCGGTTC
16250205 CGTATGCTTAGACTGGGAATGAACTT
1 CGTATGCTTAGACTGGGAATGAACTT
16250231 CGTATGCTTAGACTGGGAATGAACT
1 CGTATGCTTAGACTGGGAATGAACT
16250256 CTGTATACCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
CGTATGCTTAGACTGGGAATGAACTT
Found at i:16250453 original size:881 final size:886
Alignment explanation
Indices: 16249356--16251341 Score: 2670
Period size: 881 Copynumber: 2.2 Consensus size: 886
16249346 CCGGTCTGAT
* * * * * *
16249356 CTTAAACTTGGAATGAACTCTGTATGCCTAAGTCAACCCATGGAACGAGCGTGCGGGTGCCCAAC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * *
16249421 CGGCTAGAGGGGCTAGATACGCAAGCCGGGGATCGGCTGGGTCACCCC-CTGTGTGCTGCCGATC
66 CGGCTAGAGGGGCAAGATGCGCAAGCCGGGGATCGGCTGGGTC-CCCCTCTATGTGCTGCCGATC
* * * *
16249485 CTGCTGCTGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATATACCTAAGCCA
130 CTGCTGCTGCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* **
16249550 ACCGACGAAACGAGCAGGCGGGCGGACGGGCGGGCACTAAGTCGGCCAGAGAGACGGGATACGGA
195 ACCGACGAAACGAGCAGGCGGGCGGACGGGCGGGCACTAAGCCGGCCAGAGAGACGGGATACCCA
16249615 AGCCGT-GATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACGTGCCAATGC
260 AGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGA-GTGCCAATGC
16249678 CATTTTTACGACTTGTAAATTCACACAACGGTCCCTTAAGCCTTCATGTGAAGTATCATGGC-AA
324 CATTTTTACGACTTGTAAATTCACACAACGGTCCCTTAAGCCTTCATGTGAAGTATCAT-GCAAA
* * **
16249742 GACGACTCGTTTTATATTTTTCATAATTTTTGAAAC-TTTTGCGGTTCAGGATATTTTAAAATTT
388 GACAACTCGTTTTATATTTTTCACAATTTTTGAAACTTTTTGCAATTCAGGATATTTTAAAATTT
** * *
16249806 TTTTGCAAGGAGTTTT-GGCCC-C-A-A-ATG-T-TTG-TTGGCATGCACAAAAAAATTCAGCTC
453 TTCCG-AAGGAGTTTTAGCCCCACTAGACATGATCTTGTTTGGCATGCACAAAAAAATTCAGCTA
*
16249863 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
517 AAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
16249928 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTT-AAGGAGGTATGAGTTCTCGAGAT
582 GGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAAGG-GGTATGAGTTCTCGAGAT
*
16249992 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA
646 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CAGCACCCAACACACATCATGTGCGCA
* * **
16250057 CACCCCCCGGCCCCCCGATCGCCGGAACCCCAAGGCCATCGGTCAGGTTCTCCGGTTATCCTCCG
710 CACCCCCCCGCCCCCCGATCACCGGAACCCCAAGGCCATCGGTCAGGTTCTCCGGCGATCCTCCG
** * * **
16250122 GCGATAGTGCCCCGGCGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATCTGCTGCTG
775 GCGATAGTGCCCCGGCGAAGAAAAATGCAGCACCAACACATGCCCGAGCCCAACATCTGCTACCA
* *
16250187 CAACCCTTGGTCCGGTTCCGTATGCTTAGACTGGGAATGAACTTCGTATG
840 CAACCCTCGGTCCGG-TCCG-AT-CTTAGACTGGGAATGAACTCCGTATG
*
16250237 CTTAGACTGGGAATGAACTCTGTATACCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
** * * *
16250302 CGGCTAGAGGGGCGGGATGCACAAGCCAGGGATCGG-TCGGGTCCCCCTCTATGTGCTGCCAATC
66 CGGCTAGAGGGGCAAGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTATGTGCTGCCGATC
* *
16250366 CTACTGCTGCAACCCTCAGTCCGGTCTAATCTTAGACTCGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCTGCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * *
16250431 ACCGACGAAACGAGTGGGCGGGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCCCA
195 ACCGACGAAACGAGCAGGCGGGCGGACGGGCGGGCACTAAGCCGGCCAGAGAGACGGGATACCCA
* *
16250496 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGAGTGCCAATGCC
260 AGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGAGTGCCAATGCC
* * * * *
16250561 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGCAAAGA
325 ATTTTTACGACTTGTAAATTCACACAACGGTCCCTTAAGCCTTCATGTGAAGTATCATGCAAAGA
* * * * *
16250626 CAACTCGTTTTCTGTTTTTCACCATTTTTGAAACTTTTTGCAATTCGGGATTTTTTAAAATTTTT
390 CAACTCGTTTTATATTTTTCACAATTTTTGAAACTTTTTGCAATTCAGGATATTTTAAAATTTTT
* * **
16250691 CCGAATGCGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGTGTGCACAAAA
455 CCGAAGGAGTTTTAGCCCC--AC----TAGACATGAT-CTTG-------TTTGGCATGCACAAAA
16250756 AAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
506 AAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
16250821 AGACACTTTAAGGGTTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAG
571 AGACACTTTAAGGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAAGGGGTATGAG
* * *
16250886 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAGCACCCAACGCACATC
636 TTCTCGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAGCACCCAACACACATC
* ** * *
16250951 ATGTGCGCGCACCCCCCCGCCCCCCGATCATGGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC
701 ATGTGCGCACACCCCCCCGCCCCCCGATCACCGGAACCCCAAGGCCATCGGTCAGGTTCTCCGGC
* * * * * *
16251016 GATGCTCTGGCGATGGTGCCCCGGTGAAGAAAAATGCAGTACCAACACATGCTCGAGCCCAACAT
766 GATCCTCCGGCGATAGTGCCCCGGCGAAGAAAAATGCAGCACCAACACATGCCCGAGCCCAACAT
* * * *
16251081 GTGCTACCATAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
831 CTGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
** * * *
16251137 CTTAGACTGGGAATGAACTCCATATGCCAAAGTCAACCCACGAAACGAGCGTGCCGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * **
16251202 CGGCCAAAGGGGCAAGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTACGTGCTATCGATCC
66 CGGCTAGAGGGGCAAGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTATGTGCTGCCGATCC
** * * * ***
16251267 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAGCAAACTCCGTATGCCTAAGCCAA
131 TGCTGCTGCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
16251332 CTGACGAAAC
196 CCGACGAAAC
16251342 AATTTTGTGA
Statistics
Matches: 959, Mismatches: 116, Indels: 41
0.86 0.10 0.04
Matches are distributed among these distances:
880 5 0.01
881 232 0.24
882 148 0.15
883 32 0.03
886 1 0.00
891 1 0.00
892 1 0.00
893 3 0.00
894 1 0.00
896 3 0.00
900 200 0.21
901 3 0.00
902 3 0.00
903 145 0.15
904 177 0.18
905 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (886 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGGCTAGAGGGGCAAGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTATGTGCTGCCGATCC
TGCTGCTGCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCAGGCGGGCGGACGGGCGGGCACTAAGCCGGCCAGAGAGACGGGATACCCAA
GCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGAGTGCCAATGCCA
TTTTTACGACTTGTAAATTCACACAACGGTCCCTTAAGCCTTCATGTGAAGTATCATGCAAAGAC
AACTCGTTTTATATTTTTCACAATTTTTGAAACTTTTTGCAATTCAGGATATTTTAAAATTTTTC
CGAAGGAGTTTTAGCCCCACTAGACATGATCTTGTTTGGCATGCACAAAAAAATTCAGCTAAAAA
ATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAGGGC
TACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAAGGGGTATGAGTTCTCGAGATTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACAGCACCCAACACACATCATGTGCGCACACCCC
CCCGCCCCCCGATCACCGGAACCCCAAGGCCATCGGTCAGGTTCTCCGGCGATCCTCCGGCGATA
GTGCCCCGGCGAAGAAAAATGCAGCACCAACACATGCCCGAGCCCAACATCTGCTACCACAACCC
TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:16251147 original size:26 final size:26
Alignment explanation
Indices: 16251111--16251163 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16251101 TCGGTCTGAT
*
16251111 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16251137 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16251163 C
1 C
16251164 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16251704 original size:26 final size:26
Alignment explanation
Indices: 16251668--16251720 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16251658 TCGGTCTGAT
16251668 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16251694 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16251720 C
1 C
16251721 CAAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16251848 original size:557 final size:557
Alignment explanation
Indices: 16250786--16252132 Score: 2430
Period size: 557 Copynumber: 2.4 Consensus size: 557
16250776 AGTGTACAAG
* * * *
16250786 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAGGGTTACTGGCAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGTAGCAAACC
* * *
16250851 TGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
66 TGTAAAATCTCAAATGCTCTTT-AAGGGGTTTAAGTTCTTGAGGTTTGATGAGGGAAAGGGGGCC
*
16250916 AATATAAGGGCCAAGTA-CAGCACCCAACGCACATCATGTGCGCGCACCCCCCCGCCCCCCGATC
130 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCGCACCCCCCCGCCCCCCGATC
16250980 ATGGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGGTGAAG
195 ATGGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGGTGAAG
16251045 AAAAATGCAGTACCAACACATGCTCGAGCCCAACATGTGCTACCATAACCCTCGGTTCGGTCTGA
260 AAAAATGCAGTACCAACACATGCTCGAGCCCAACATGTGCTACCATAACCCTCGGTTCGGTCTGA
*
16251110 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCAAAGTCAACC
325 TCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCAAAGTCAACC
16251175 CACGAAACGAGCGTGCCGGTGCTCAGTCGGCCAAAGGGGCAAGATGCGCAAGCCGGGGATCGACT
390 CACGAAACGAGCGTGCCGGTGCTCAGTCGGCCAAAGGGGCAAGATGCGCAAGCCGGGGATCGACT
*
16251240 GGGTCCCCCTCTACGTGCTATCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTG
455 GGGTCCCCCTCTACGTGCTATCGATCCTGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTG
*
16251305 GGAGCAAACTCCGTATGCCTAAGCCAACTGACGAAACA
520 GGAACAAACTCCGTATGCCTAAGCCAACTGACGAAACA
16251343 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGTAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGTAGCAAACC
16251408 TGTAAAATCTCAAATGCTCTTTAAGGGGTTTAAGTTCTTGAGGTTTGATGAGGGAAAGGGGGCCA
66 TGTAAAATCTCAAATGCTCTTTAAGGGGTTTAAGTTCTTGAGGTTTGATGAGGGAAAGGGGGCCA
*
16251473 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCGCACCCCCCCGCCCCCCGATCA
131 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCGCACCCCCCCGCCCCCCGATCA
16251538 TGGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGGTGAAGA
196 TGGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGGTGAAGA
16251603 AAAATGCAGTACCAACACATGCTCGAGCCCAACATGTGCTACCATAACCCTCGGTTCGGTCTGAT
261 AAAATGCAGTACCAACACATGCTCGAGCCCAACATGTGCTACCATAACCCTCGGTTCGGTCTGAT
16251668 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCAAAGTCAACCC
326 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCAAAGTCAACCC
*
16251733 ACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAAAGGGGCAAGATGCGCAAGCCGGGGATCGACTG
391 ACGAAACGAGCGTGCCGGTGCTCAGTCGGCCAAAGGGGCAAGATGCGCAAGCCGGGGATCGACTG
16251798 GGTCCCCCTCTACGTGCTATCGATCCTGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGG
456 GGTCCCCCTCTACGTGCTATCGATCCTGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGG
* **
16251863 GAACGAACTCCGTATGCCTAAGCCAACTGACGAAATG
521 GAACAAACTCCGTATGCCTAAGCCAACTGACGAAACA
*
16251900 ATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGTAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGTAGCAAACC
16251965 TGTAAAATCTCAAATGCTCTTTAAGGGGTTTAAGTTCTTGAGGTTTGATGAGGGAAAGGGGGCCA
66 TGTAAAATCTCAAATGCTCTTTAAGGGGTTTAAGTTCTTGAGGTTTGATGAGGGAAAGGGGGCCA
**
16252030 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACA-CCCCCCGACCCCCCGATC
131 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCGCACCCCCCCG-CCCCCCGATC
*** * * *
16252094 GCCGGAACCCCAATGCTG-CCGTCAGGTTCTCCGACGATG
195 ATGGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATG
16252133 GCACCCCGAC
Statistics
Matches: 762, Mismatches: 26, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
556 82 0.11
557 680 0.89
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.22
Consensus pattern (557 bp):
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGTAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGTTTAAGTTCTTGAGGTTTGATGAGGGAAAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCGCACCCCCCCGCCCCCCGATCA
TGGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGGTGAAGA
AAAATGCAGTACCAACACATGCTCGAGCCCAACATGTGCTACCATAACCCTCGGTTCGGTCTGAT
CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCAAAGTCAACCC
ACGAAACGAGCGTGCCGGTGCTCAGTCGGCCAAAGGGGCAAGATGCGCAAGCCGGGGATCGACTG
GGTCCCCCTCTACGTGCTATCGATCCTGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGG
GAACAAACTCCGTATGCCTAAGCCAACTGACGAAACA
Found at i:16253035 original size:26 final size:26
Alignment explanation
Indices: 16253006--16253058 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16252996 CTTGTCCGAT
*
16253006 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16253032 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16253058 C
1 C
16253059 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16253938 original size:26 final size:26
Alignment explanation
Indices: 16253909--16253961 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16253899 CCTGTCCAAT
*
16253909 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16253935 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16253961 C
1 C
16253962 CTAAGTAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16254337 original size:903 final size:903
Alignment explanation
Indices: 16252354--16269199 Score: 21757
Period size: 900 Copynumber: 18.8 Consensus size: 903
16252344 GCTGCCACAA
* * * ** * * *
16252354 CGGGTGGGCGGGCGGGCATTGCGCCGGTTAGAGAGATGGGATGCACAAGCCATGGATCGATAGGG
1 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* **
16252419 TGGTAGGTGGGTTTCA-GTACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAA
66 TGGTAGGTGGGTTT-AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* *
16252483 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG-TTCATGGCAAGATGACTCATTTTCTATTT
130 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * * * *
16252547 TTCACGA-TTGTCAAAATTTTTGCGATTCAGGATTTTTTAAAATTTTTTCAGAA-GAGTTTTGGC
195 TTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
** * * *
16252610 CAAAAACTTGATAGACGTGATCCTTATATTTTTGTTGGCATACACAAAAAAATTCAGCTAAAAAC
260 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
16252675 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCT
325 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
16252740 ACTGGCAGCGAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATG
390 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
16252804 AGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCGCCCATCGCACATCATGTGCGCACACCCC
455 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * *** * *
16252869 CCCGGCCCCCCCAATAATCGGAACTGTAATGCCGCCAGTCAGGTTCTCC-A--A-------CGAT
520 CCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGCGAT
* * * * * *
16252924 GGTGCCCCGACAAAGAAAAATGCGACACCAACACATGCCCGAGCCTAGCATGTGCTGTCGCAACC
585 GGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
*
16252989 CTCGGTCCTTGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
650 CTCGGTCC-TGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * ** * * * * * *
16253054 TATGCCTAAGTCAACCCATGAAACAAGCGTGTGGTTGCTCA-ACGACTAGAGGGGTGGGATACGT
714 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * *
16253118 AAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGTTGCCAATCCTGCTGCTGCAACCCTCAGTCTG
779 AAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTG
* *
16253183 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CAACCGACGAAACAAGCAGG
844 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * * * * * **
16253242 CCGACGGGCGGTCGGGCACTACGCCGACCACAGAGACGGGATGCGCAAGTCACGGATCGATAGGG
1 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
16253307 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
66 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
*
16253372 TTCATACGATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
131 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* ** * * *
16253437 TCATGATTTTTGAAACTTTTTATAGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGCTTTGGCC
196 TCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
16253502 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTC-GCTAAAAAC
261 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAAC
16253566 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
325 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
16253631 ACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
390 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * * *
16253696 AGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGTATAACCC
455 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-CACCC
* * * * *
16253761 CCCCGGCCCCCCCGATCACCTGAACCCTAATGCCGTCGGTCAGGTTCTTCAACAATGCTCCTGCG
519 CCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC-GCG
* *
16253826 ATGGTGCCCCGACGAAGAAAAATGTGGCACCAAG-ACATGCCCGAGCCCAGCATGTGCTGCCGCA
583 ATGGTGCCCCGGCGAAGAAAAATGCGGCACC-AGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * * * *
16253890 ACCCTCGATCCTGTCCAATCTTAGATTGGGAATGAACTCCATATGCTTAGACTGGGAATGAGCTC
647 ACCCTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * *
16253955 CGTATGCCTAAGT-AAACCACGAAATGAGCGTGCGGGTGCTTAGCCGG-CAGAGGGGCGGGATGT
712 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
** * * * * * * * * * *
16254018 GCAAGCCGGGGATCGGTTGAGTCCCTCTCTGTGTGCTGTCAATCTTACTTCCACAACCCTCGGTT
777 GCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTC
* * * * * *
16254083 TGGGCTGATCTTAGATTGGGAATGAACTCCGTTTGCCTAAGCCAATCGACGAAATGAGCGAG
842 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * ** * * * * *
16254145 CGGGTGAGCCAGCGGGCACCACACCGACCAGAGAAACGGGATGCGCAAGCCGTGGATCAATAGGG
1 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
*
16254210 TGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
66 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* *
16254275 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAGACGACTCATTTTCTATTTT
131 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * *
16254340 TCATGATTTTTGAAAC-TTTTAGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG-
196 TCACGATTTTTGAAACTTTTTA-CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* *
16254403 CCCAAAATTGGTAGAC-TAATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
260 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* **
16254467 TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCATCCCCATTTCAGACACTTTAATGGCT
325 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
16254532 ACT-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGCGTTCTCGAGGTTTGATG
390 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * *
16254596 AGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCATAACCC
455 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * *
16254660 CCCGGCCCCCCCGATCGCTGGAACCCCAATACCGTCGGTCAGGTTCTCCGGCGATGCTCCTGTGA
520 CCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC-GCGA
* * * * * *
16254725 TGGTGCCCCGGTGAAGAAAAATGTGGAACCAACACATGCCCGAGCCCAGCATGTGCTACCGTAA-
584 TGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * * * *
16254789 CCTCAGTCCTATCCAATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCG
649 CCTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * *
16254854 TATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGAGC
714 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * *
16254919 AAGCCGGGGATCGGCCGAGTCCCCCTCTGCGTGCTGGCAATCCTGCTGCTGCAACCCTCAGT-TC
779 AAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCT-
* *** ** *
16254983 GGTCTAATCTTAGACCATGAATGAACTCCGTATGCCTAAGCCAACCGATAAAATGAGCGGG
843 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
** * *
16255044 CGGATGGGTGGGCGGGCACTACGCCTGCCAGAGAGACGGGA-GCGCAAGCCGTGGATCGATAGGG
1 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * * *
16255108 TAGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCTTGCCAATGCCATTTTTATGCCTTGTAAA
66 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
*
16255173 TTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
131 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* *
16255238 TCACTA-TTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG-C
196 TCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * *
16255301 CCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCACAAAACAATTCAGCTAAAAACT
261 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * *
16255366 GGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTA
326 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
16255431 CTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
391 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * *
16255496 GGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGTG--CA-CCCC
456 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * *
16255558 CCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-AGCCATGCTCCGATGA
521 CCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA-CGATGCTCCG-CGA
* * * * * * *
16255622 TGGTGCCTCGACGAAGAAAAATGTGACACCAACACATGCCCGAGCCCAGCATGTGCTACCACAAC
584 TGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * *
16255687 CCTCAGT-CTGGTCTGATCTTAGACAGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
649 CCTCGGTCCT-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
*
16255751 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCG
713 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * ** *
16255816 CAAGTCGGGGATCGACCTGGTCCCCCTCT-CAGTGCTGCCGATCCTACTATCGCAACCGTCGGTC
778 CAAGCCGGGGATCGGCCGGGTCCCCCTCTGC-GTGCTGCCGATCCTGCTGCCGCAACCCTCGGTC
* * * *
16255880 CGGTCTGATCTTAGACTAGGAATGAACTCCGTATACCTAAGCCAACCGTCGAAACGA----G
842 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
** * * * *
16255938 CTAGCGGGCGGGCGGGCACTAAGCCGGCCAAAGAGACGGGACGCGCAAGCCGTGGATCGATAGGA
1 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * * * *
16256003 TGGCAAGTGGGTTTCGGCTCCTCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
66 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
*
16256068 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTGTTTT
131 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * * *
16256133 TTACGAATTTTGAAACTTTTTACGGTTCGGAATTTTTTAAATTTTTTTTGGAAGGAGTTTTAGCC
196 TCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * * *
16256198 CCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCAGGCATAAAAAAATTCAGCTAAAAACT
261 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
16256263 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCGGACACTTTAATGGCTA
326 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
16256328 CTGGCAGCAAGCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGA
391 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
16256393 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCC
456 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * * * * *
16256458 CTGGCCCCCCCAATCGCTGAAACCCCAATGCCG-CGGTTAGGTTCTCCGATGATGCTCCGGCGAT
521 CCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC-GCGAT
* * * * * *
16256522 GGTGCCCCGGTGAAGAAAAATGCGACACCAACACATGCTCGAGCCCAGTATGTGCTGTCGCAACC
585 GGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * *
16256587 CTCGGT-CTGGTCTGATCCTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCG
650 CTCGGTCCT-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * *
16256651 TATGCCTAAGTCAACCCATGAAACGAGCGT----GCG---AG--TGCCAGAAGGGCGGGATGCGC
714 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * ** * * *
16256707 AAGCCGGGGATCGACCGGGTCCACCTCTACGTGCTGTCGATCCTGCTATCACAACCCTCGATCAG
779 AAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTG
* * * * *
16256772 GTCTGATCTGAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGTGGA
844 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * * * * *
16256832 CGGCCGGGCGGACGGGCACGATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGAGAGGG
1 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* **
16256897 TGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAA
66 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
** *
16256962 TTCATACAATAATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTT
131 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * * *
16257027 TCAGGATTTTTGAAACTTTTTATGATTCGGGATTTTTTATAATTTTTTTGGAAGGAGTCTTGGCC
196 TCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * ** * *
16257092 CCAAACTTTGTAGACGTGATCTTTGTATTTTTGTTGGTGTGTACAAAAAAATTCAGCTACAAACT
261 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
16257157 CGAAGCGTACACGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTC-GACACTTTAATGGCT
326 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCT
16257221 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
390 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * *
16257286 AGGGATAAGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCC
455 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * ** *
16257350 CCCTGACCACCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGCTCCAGCGA
520 CCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC-GCGA
* ** * * * *
16257415 TGGTGCCCCGACGAAGAAAAATGTAGCACCAACACATGGCCAAGCCCAGCATGTGCTGCCGCAAA
584 TGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * * ** * *
16257480 CCTCGGTGCGGTCCAATCTTAGACTGTAAATGAACTACGTATGCTTAGACTGGGAATGAACTCCA
649 CCTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * * * * *
16257545 TATGCCTAAGTCAAACCACGAAACAAGTGTGCGGGTGCTCAGCCGGCCAAAGAGACGGGATACGC
714 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
** * * * * * *
16257610 AAGCCGGGGATCCACTGGGTCCCCCTCTGCGTGCTGTCGATCTTGCTACCGCAACCTTCGGTTTG
779 AAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTG
*
16257675 GTCTGATCTTAG-CTTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
844 GTCTGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* ** * * * * *
16257735 TGGGCGGGCGAACGGGCACTACGCCAGCCAGAGGGACAGAATGCGCAAGTCGTGGATCGATAGGG
1 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * *
16257800 TGGTTGGTGGGTTTAGGCACATCTTTATATTTGTGCATGCCAATGCCATTTTTATGGCTTGTAAA
66 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
*
16257865 TTCATACAATGGTCCCTTAAGCCTTCACGTGAATTTTCATGGCAAGACGACTCGTTTTCTATTTT
131 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* ** *
16257930 TCACGATTATTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTCGGCC
196 TCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
** * *
16257995 CCAAACTTGGTAGGGGTGATCCGTGTATTTTTTTTGGCATGCACAAAAAAATT-ATGCTAAAAAC
261 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA-GCTAAAAAC
* *
16258059 TCGAAGTGTACATGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTCCGACACTTTAATGGC
325 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGC
* *
16258124 TACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
389 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * * *
16258189 GGGGGATAGGAGGCCAATATATGGGCCAAGTACCAGCAACCATCGCACATCATGTGCGCACA-CC
454 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * * * *
16258253 CCCC-GACCCCTCGATCACTGGAACCCTAATGCCGTCGATCAGGTTCTTCGACGATGCTCCGACG
519 CCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG-CG
* * * * *
16258317 ATGGTGCCCTGGCGAAGAAAAATGCGGTACCAACACATGCCCGAGCCAATCATGTGCTGCCGCAA
583 ATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * *
16258382 CCCTC-GACC-GATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAATTC
648 CCCTCGGTCCTG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * **
16258445 CATATGCCTAAGTCAACCCACGAAATGAGCATGCGGGTGCTCAGAAGGCCAGAGGGGCGGGATGC
712 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * * * * * * * *
16258510 GTAAGCCGAGAATCAGTCGGGTCACCCTCTGCGTGCTACCGATCCTGCTACTGCAACCCTCGATC
777 GCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTC
* * * * *
16258575 TGGTCTGATCTTAGATTGGGAATGAACT-CGTATGCCTGAGCAAACCGACGAAACAAACGGG
842 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
** * * *
16258636 CGGG-GCGGCGGGTAGGCACTACGCCGACTAGAGAGACGGGAAGCGCAAGCCGTGGATCGATAGG
1 CGGGCG-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * * ** *
16258700 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGAATGCCAATGCCACTTTTACAGCTTTTAA
65 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* *
16258765 ATTCATACTATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTT
130 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* ** * * * * *
16258830 TTGACGATTTTCAAAACTTTTTAGGGATCAGGATTTTTTGAAATTTTTTTGGAAGGAGTTTTGGC
195 TTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
16258895 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
260 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
16258960 TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
325 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
16259025 AGTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
390 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
16259090 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
455 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * * * * *
16259154 CCC-GCCCCTCCGATCGCCAGAACCCTAATGCCGCCAGTCAGGTTCTCCGGCGATGGTCCGACGA
520 CCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG-CGA
* *
16259218 TGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAAC
584 TGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * * * *
16259283 CCTCGATTC-GATCTGATCTTAGACTAGGAATGAACTCCGTATGGTTAGACTGGGAATGAACTCC
649 CCTCGGTCCTG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * *
16259347 GTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGTCGGCCAGAGGGGCGAGATGCG
713 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* ** * * * * **
16259412 CAAGCCGGGGATCAGTTGGGTCCCCCTCTACATGCTGCCGATCCCTGCTACTGCAACCCTCACTC
778 CAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGAT-CCTGCTGCCGCAACCCTCGGTC
* * * *
16259477 CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGA----G
842 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * * *
16259535 -AGGC---CGGGCGGGCACTCCGTCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
1 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* ** * * *
16259596 TGGTAGGTGGGTTTAGGCACATCTTCGTATTTCTGTGTGCCAATTCAATTTTTATGGCTTGCAAA
66 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
*
16259661 TTGATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
131 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * *
16259726 TCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTAGGCC
196 TCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* *
16259791 CCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
261 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
16259856 CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTA
326 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
16259921 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGA
391 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * * *
16259986 GAGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCAAACCCCC
456 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * * * * * *
16260051 CCGGCACCCCCGATCATCAGAACCCCAAAGTCG-CGGGTTAAGTTCTCCGATGATGCTCCGACGA
521 CCGGCCCCCCCGATCACCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCTCCG-CGA
* * * * *
16260115 TGGAGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGTCCAGCATGTGCTACCGTAAC
584 TGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-
*
16260180 CCTCAGTCTGATTCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCG
648 CC-C--TC-G----G-TC-----C------TG---TCCG-AT-CTTAGACTGGGAATGAACTCCG
*
16260245 TATGCTTAGACTGGGAATGAACTCCGTAGGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
688 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * * ** **
16260310 CAGTCGGCCAAAGGGGTGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCATCTATGTGCTATTC
753 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCT-GCC
** * * * * *
16260375 -ATCCTATTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATTAACTCCGTATGCCTAA
817 GATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
**
16260439 GCCAACCGAC-AAA--A-CAAG
882 GCCAACCGACGAAACGAGCGGG
* * * * *
16260457 CGGGTGGGCGGGCGGGCACAACGCCTGCCAGAGAGACGGGATGCGCAAGCCATGGACCGATAGGG
1 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
*
16260522 TGGTAGGTGGGTTTGGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
66 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
16260587 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
131 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * **
16260652 TCACCATTTTCGAAACTTTTTGC-GTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCC
196 TCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * *
16260716 CCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCGTGCACAAAAAAAATTCAGCTAAAAAC
261 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAAC
*
16260781 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCT
325 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
16260846 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
390 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
*
16260911 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCGCATCATGTGCGCACACCCC
455 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * **
16260976 TCCCGGCCCCCCTGATCACCGGAACCCAAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCAGCG
520 -CCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC-GCG
* * * *
16261041 ATGGTGCCCCGACGAAGAAAAATACGGCACCAG-AAATGCCTGAGCCCAGCATGTGCTGCCGCAA
583 ATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
*
16261105 CCCTTGGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
648 CCCTCGGTCCT-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * ** *
16261169 CGTACGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCTAGCCAGAAGGGCGGGATGC
712 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * *** * * ** * * *
16261234 GTAAGCCGGGGATCAGTTAGGTCCCCCTCTGTGTGTTGTTGATCCTACTGCTGCAACCCTCGGTT
777 GCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTC
* * ** * * * *
16261299 TGATCTAATCTTAGACTGGGAATGAACTTTGTATACCTATGCCAGCCGATGAAACGAGCGGG
842 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * * * ** * * * *
16261361 CCGGCGAGCGAGCGGGTACTACATCGGCAAGAGAGATGTGATGCGCAAGCCGTGGATCAATAGGG
1 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* *
16261426 TGGTAGGTGGGTTTAGGCACATCTTCCTATTTCTGCATGCGAATGCCATTTTTATGGCTTGTAAA
66 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
** * *
16261491 TTCATACAATGGTCCCTTAAGTGTTAACGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTT
131 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * *
16261556 TCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGCAGTTATAGCC
196 TCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
16261621 CCAAACTTGGTAGACGTGATCCTTGTACTTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAAC
261 CCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
16261685 TCGAAGTGTACAAGATTTTGTGACCAATTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCT
325 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * * *
16261750 ACTGGCAGCAAAGCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGCGAGTTCTTGAGGTTTGATG
390 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
16261815 AGGGATAGGGGGCCAATATAAGGACCAAGTACCAGCACCCATCGTACATCATGTGCG-ACACCCC
455 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * *
16261879 CCGGGCCCTCCCGATCATCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGTGA
520 CCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC-GCGA
*
16261944 TGGTGCCCCGGCGAAGAAAAATGTC-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGTTC-CA
584 TGGTGCCCCGGCGAAGAAAAATG-CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CCGCA
* * *
16262007 ACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGGTTAGACTGGGAATGAACTC
647 ACCCTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * ** *
16262072 CGTACGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGCTCAGCCAACCAGAGGGGCGGGATGA
712 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* ** ** * * * * * **
16262137 TCAAGCCGGGGATCGATCGGGTCGACCTCTACATGCTGTCGATCCTACTGCCGTAACCCTCCATC
777 GCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTC
* * * *
16262202 CGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGA
842 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* ** * * **** * *
16262264 CGGGCGGGCGGGCAGGCACATCTTCATATTTCTACGTGCCA-A-TGCCATTTCTGTGTAAGCCGT
1 CGGGCGGGCGGGC-GG-GCA----C-TA---CGCCG-GCCAGAGAGAC-GGGATGCGCAAGCCGT
* * * *
16262327 GGATAGATTGGGTGGTAGATGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCATTTTT
54 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* * *
16262392 ATGCCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTC
119 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* ** * ** * *
16262457 GTTTTCTATTTTTCATGATTTTTGAAACTTTTGGCAGTTCAAGATTTTTTAAAATTTTTTTGAAA
184 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* *
16262522 GGAGTTTTGGCCCCAAACTTGGTAGACGTGACCCTTGTATTTTTGGTGGCATGCACAAAAAAATT
249 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
16262587 CAGCT-AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACA
314 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
16262651 CTTTAATGGCTACTGGCAGCAAACCTATAAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
379 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * * *
16262716 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGAAGCAGCACCCATCACACATCATGT
444 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
16262781 GCGCACA--CCCCCAGCCCCCCTGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA
509 GCGCACACCCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
* *
16262844 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGT
574 TGCTCC-GCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
16262909 GCTGCCGCAA-CC-C--T-C-G---G-TC-----C---G---G---TCCG-AT-CTTAGACTGGG
638 GCTGCCGCAACCCTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * *
16262948 AATTAACTCCGTATGCCTAAGTCAACCCACG-AACGAGCGTACGGGCACTCAGCTGGCCAGAGGG
703 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * *
16263012 GCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGTTGCCGATCCTGCTGCCACAA
768 GCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAA
* ** * *
16263077 CCCTCAGTCTGGTCTGATAATAGACTGGGAATGAACTCCGCATGCCTAAGCCAACCGACGAAATG
833 CCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
16263142 A----G
898 AGCGGG
* *
16263144 CGGGCGGGCGGGCGGGCACTACGTCGGCCGGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
1 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
*
16263209 TGGTAGGTGGGTTTAGAG-ACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAA
66 TGGTAGGTGGGTTTAG-GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* * * *
16263273 ATTCATACAATGGTCCCTTAAGCCTCCACGTGAAGTTTCATGGCAGGATGACTCGTTTTCAATTT
130 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* **
16263338 TTCACGATTTTTGAAACTTTTTGCGGTTTAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
195 TTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * *
16263403 CCCAAACGTGGTAGACGTGATCCTTGTATCTTTGTAGGCATGCACAAAAAAATTCAGCTAAAAAC
260 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * *
16263468 TCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGT-CCAATTTCAAACACTTTAATGGCT
325 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * * *
16263532 ACT-GCTTGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGAT
390 ACTGGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* *
16263596 GAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCG
454 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-
* * * * **
16263661 CGCCTCCCGGCCCCCTCGACCACCGGAACCCCAATGCCG-CTAGTCAGGTTCTCAGGTGATGCTA
517 C-CC-CCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCT-
* ** * *
16263725 CGGCGATGGTGCCCCGGCGAAGAAATTTGCGGCACCAGCACATGCCCAAGCCCAGCATGTCCTGC
578 CCGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* *
16263790 CGCAACCCTCGGT-CTG---G-TC-----C-------G-A-----T-T--TTAGACTAGGAATGC
643 CGCAACCCTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * **
16263829 ACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAACCGGCCAGAGAGGCAAG
708 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* ** * *
16263894 ATGCGCAAGCCGAGGATTTGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTC
773 ATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTC
* * ** * *
16263959 AGTTTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGCGG
838 GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
16264024 G
903 G
** * * * * *
16264025 CGGGCGACCGGACGGGCACTATGCCGGCCAGAGAAACGGGATGCACAAGCCGTGGATCGATAGAG
1 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* *
16264090 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTGATGGCTAGTAAA
66 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* * *
16264155 TTCCTACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAGGACTCGTTTTCTATTTT
131 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
** * * * * *
16264220 TCATAATTTTTGAAACTTTTTGCGATTCAGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCC
196 TCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* *
16264285 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAGAAACT
261 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
** * *
16264350 TAAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTA
326 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
16264415 TTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
391 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
16264480 GAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCC
456 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC
* * *
16264545 CCCGGCACCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGA---T--GC--T
520 CCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGCGAT
* * * *
16264603 GGTGCCCCGGTGAAGAAAAATGCTGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGTAACC
585 GGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * * * * *
16264668 CTCGGTCCAGTCCTATCTTAAACTGGGAATGAACTCCATATGCTTAGACTGGGAATGCACTCCAT
650 CTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* *
16264733 ATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG-GGAGATGCAC
715 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG-GATGCGC
** * * * *
16264797 AAGCCGGGGATCTACCGGGTCCCCCTCTACGTGCTGCCAATCTTGCTGTCGCAACCCTCGGTCTG
779 AAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTG
** *
16264862 GTCCAATCTTAGACTAGGAATGAACTCTC-TATGCCTAAGCCAACCGACGAAACGAGCGGG
844 GTCTGATCTTAGACTGGGAATGAACTC-CGTATGCCTAAGCCAACCGACGAAACGAGCGGG
** * * * *
16264922 CGGGCGGGCGTACGGGCTCTAC-ACGGCCAGAGAGACGAGATGTGCAAGCCGTGGATCGATAGGG
1 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
*
16264986 TAGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
66 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
*
16265051 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTT
131 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * *
16265116 TCATGATTTTTGAAACTTTTTACGGCTCAGGATTTTTTAAAATTTTTTTCGGAAGGAGTTTTGGC
196 TCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGC
* * *
16265181 CCCAAACTTGGAAGAGGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAAC
260 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
16265246 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTT
325 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
16265311 ACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGTTTGATG
390 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
** *
16265376 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTTACATCATGTGCGTACA-CCC
455 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * *
16265440 CCCGG-----GCG-T---CGGAACCCCAATGCCGTCGATCCGGTTCTCCGGCGATGCTCCGGTGA
520 CCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC-GCGA
* * * * * *
16265496 TGGTGCCCTGGCAAAGAAAAATGCAGCACCAGCACATGCCCGAGCCTAGCATTTGTTGCCGCAAC
584 TGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
** * * * *
16265561 CCTCGAACC-GATCGGATCTTAGACTGGGAATGAACTCCGTATGCTTATACTAGGAATGAACTCT
649 CCTCGGTCCTG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * *
16265625 GTATGCTTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGACGGGAT-CG
713 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * ** * * ** *
16265689 TAAGTCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTGCTACAACCCTCGATCT
778 CAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCT
* * * * * * * *
16265754 GGTCTGATCTTTGATTGGGAATGAACTCCGTATGCCTGAGCGAACTGACGAAACAAACGAG
843 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * * * * *
16265815 CGGGCGGGCGGGCAGGCACTATGTCGGCTAGAGAGACGGGAAGCTCAAGCCGTGGATCGATAGGG
1 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * * * *
16265880 TGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATCCCACTTTTACGGCTTTTAAA
66 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* * *
16265945 TTCATACTATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTTTATTTT
131 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
** * * * *
16266010 TCACGATTTTCAAAACTTTTTAGGGTTCAGGATTTTTTGAAATTTTTTTGGAAGGAGTTTTGGCC
196 TCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
*
16266075 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCGCAAAAAAATTCAGCTAAAAACT
261 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * * *
16266140 CGTAGTGAAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTA
326 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
16266205 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGA
391 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
16266270 GGGATAGGGGGCCAATATAGGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCC
456 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * * * * * * *
16266333 CCAGCCCCCGCGATCGCTGAAACCCCAATGCTGCCGGTCAGGGTT-TCCGATGATGCTCTGGCGA
521 CCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCA-GGTTCTCCGACGATGCTC-CGCGA
* * *
16266397 TGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAAC
584 TGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * ** * *
16266462 CCTCGATTC-GATCCGATCTTAGACTGGGAATGAACTCCACATGGTTAGACTGGGAAGGAACTCC
649 CCTCGGTCCTG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * * * * *
16266526 GTATGCCTAAGTCAACCCACGGAACGATCTTGCGAGCACTCAGCCAGCCAGAGGGACGGGATGTG
713 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * * * * **
16266591 CAAGCCGGGGATTGGCCTGGTCTCTCTCTACGTGCTACCGATCCTACTATCGCAACCCTCGGTCT
778 CAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCT
** ** *
16266656 GGTCCAATCTTAGACTAGGG-ATGAACTCCGTATGCCTAAGCCAATAGACGAAAAGAGCGGG
843 GGTCTGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * * * *
16266717 CGGGCGGGCGGGCGGGCACTATGCTGGCCAGAGAGACGGGATGCGCAAGTCATCGATCGATAGGG
1 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * **
16266782 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGTTATTTTTATGGCTTGTAAA
66 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* * * *
16266847 TTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGATTCCTTTTCTATTTT
131 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
** * * * ** *
16266912 TCACGATTTTCAAAACTTTCTGCGGTTTGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGTC
196 TCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* *
16266977 CCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACT
261 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
16267042 AGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTA
326 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
16267107 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGA
391 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * *
16267172 GGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCACATCTTGTGGGCACA-CCCC
456 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * * *
16267236 CC-G-CCCCCCGATCATCGGAACCCCAATGCC-ACTGGTCAAGTTCTCCGGCGATGCTCCGGCCA
521 CCGGCCCCCCCGATCACCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCTCC-GCGA
* * * *
16267298 TGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGAATGTACTGCCGCAAC
584 TGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
** ** * *
16267363 CCTCGGTCCAATATGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGAGAATGAACTCCG
649 CCTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * *
16267428 TATGCCTAAGTCAACCCACGAAACGAGCATGCAGGTGCTCAGCCGGCCAG-GGGGCGGGATGCGC
714 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * ** * ** * *
16267492 AAGCCGGGGATCGGCCGGGTCCCCCTTTGCATGCTATCGATCCTACTGCCATAAACCTTGGT-TC
779 AAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCT-
* ** * *
16267556 AGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGAGCGGG
843 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* ** * * * * *
16267617 TGGATGGGCCGACGGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGTG
1 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* **
16267682 TGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAA
66 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* *
16267747 TTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTATATTTT
131 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * *
16267812 TCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGACC
196 TCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * ** *
16267877 CCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCTTCTAAAAAGT
261 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
16267942 AGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGTCACTTTAATGGCTA
326 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
16268007 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
391 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * *
16268072 GGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGTGCACATCCCC
456 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* ** *
16268137 CCGG-CCCCCTGATTGCCGAAACCCCAATGCCGTCGGTCAGGTTCT-C--CGA-------CGATG
521 CCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGCGATG
* * * * *
16268191 GTGCCCCGACGATGAAAAATACGACACCAACACATGCCCGAGCCCAGCATGTGCTGGCC-CAACC
586 GTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-GCCGCAACC
* * * * *
16268255 CTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACAGGGAATAAACTCTGT
650 CTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * *
16268320 ATGCCTAAGTCAACCCAAAGAAATGAGCGTGCGGGCGCTCAACCGGCCAGATGGGCGGGATGCGC
715 ATGCCTAAGTCAACCC-ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * * ** * *
16268385 AAGCCAGGGATCGACCGAGTCCCACTCTGCATGCTATC-ATTCTGGCTGCCGCAACCCCCGGTCT
779 AAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCT-GCTGCCGCAACCCTCGGTCT
* ** * **
16268449 GATCCAATAC-TAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAATGGG
843 GGTCTGAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* *
16268510 CGAGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
1 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
*
16268575 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTTTGGCTTGTAAA
66 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
*
16268640 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTACTTT
131 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * *
16268705 TCACAATTTTTGAAACTTTTTACGGTTTGGGATTTTTTATAATTTTTTCGAAAGGAGTTTTGGCC
196 TCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* *
16268770 CCAAACTTGGTATACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
261 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
16268835 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTA
326 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
16268900 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
391 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
16268965 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAG-ACATCATGTGCGCACACCCC
456 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-GCACATCATGTGCGCACACCCC
* * ** * * *
16269029 CCCGACCCCCTCGATCGTCGGAACCCCAATGCCG-CTGGTCAAGTTCTCCGACGATGCTCTGACA
520 CCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCTCCG-CG
* * * *
16269093 ATGGTGCCCTGACGAAGAGAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCCGCCGCAA
583 ATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * *
16269158 CCCTTGGT-CTGGTCCTATCTTAGACTGGGAATGAACTTCGTA
648 CCCTCGGTCCT-GTCCGATCTTAGACTGGGAATGAACTCCGTA
16269200 CGCCTAAGTC
Statistics
Matches: 13993, Mismatches: 1707, Indels: 499
0.86 0.11 0.03
Matches are distributed among these distances:
869 5 0.00
870 385 0.03
871 113 0.01
872 2 0.00
873 4 0.00
874 1 0.00
875 3 0.00
876 152 0.01
877 142 0.01
878 3 0.00
879 46 0.00
880 20 0.00
881 337 0.02
882 137 0.01
883 2 0.00
884 138 0.01
885 39 0.00
886 34 0.00
887 4 0.00
888 145 0.01
889 36 0.00
890 160 0.01
891 292 0.02
892 127 0.01
893 1050 0.08
894 1048 0.07
895 630 0.05
896 258 0.02
897 1058 0.08
898 629 0.04
899 444 0.03
900 1183 0.08
901 1011 0.07
902 1051 0.08
903 1156 0.08
904 606 0.04
905 165 0.01
906 6 0.00
907 2 0.00
909 2 0.00
910 6 0.00
911 116 0.01
912 184 0.01
913 252 0.02
914 3 0.00
916 1 0.00
917 1 0.00
919 2 0.00
921 7 0.00
922 67 0.00
923 138 0.01
924 2 0.00
925 79 0.01
926 427 0.03
927 80 0.01
928 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (903 bp):
CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
TCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
CCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGCGATG
GTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
TCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
GCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGT
CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
Found at i:16254842 original size:26 final size:26
Alignment explanation
Indices: 16254806--16254858 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16254796 CCTATCCAAT
* *
16254806 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16254832 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16254858 C
1 C
16254859 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16255741 original size:26 final size:26
Alignment explanation
Indices: 16255704--16255756 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16255694 CTGGTCTGAT
16255704 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
16255730 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
16255756 C
1 C
16255757 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:16256641 original size:26 final size:26
Alignment explanation
Indices: 16256605--16256655 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16256595 GGTCTGATCC
*
16256605 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
16256631 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
16256656 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:16257548 original size:26 final size:26
Alignment explanation
Indices: 16257497--16257549 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16257487 GCGGTCCAAT
* *
16257497 CTTAGACTGTAAATGAACTACGTATG
1 CTTAGACTGGAAATGAACTACATATG
* *
16257523 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTACATATG
16257549 C
1 C
16257550 CTAAGTCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTACATATG
Found at i:16258435 original size:26 final size:26
Alignment explanation
Indices: 16258399--16258451 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16258389 CCGATCCGAT
16258399 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16258425 CTTAGACTGGGAATGAATTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16258451 C
1 C
16258452 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16259338 original size:26 final size:26
Alignment explanation
Indices: 16259301--16259351 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16259291 CGATCTGATC
16259301 TTAGACTAGGAATGAACTCCGTATGG
1 TTAGACTAGGAATGAACTCCGTATGG
*
16259327 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTAGGAATGAACTCCGTATG
16259352 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGG
Found at i:16260235 original size:26 final size:26
Alignment explanation
Indices: 16260197--16260272 Score: 134
Period size: 26 Copynumber: 2.9 Consensus size: 26
16260187 CTGATTCGAT
*
16260197 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16260223 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16260249 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
16260273 GGCCTAAGTC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16261152 original size:26 final size:26
Alignment explanation
Indices: 16261123--16261172 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
16261113 CTGGTCCGAT
16261123 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16261149 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
16261173 CGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16264713 original size:26 final size:26
Alignment explanation
Indices: 16264684--16264736 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16264674 CCAGTCCTAT
16264684 CTTAAACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
16264710 CTTAGACTGGGAATGCACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
16264736 C
1 C
16264737 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:16265607 original size:26 final size:26
Alignment explanation
Indices: 16265578--16265633 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
16265568 CCGATCGGAT
*
16265578 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
16265604 CTTATACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16265630 CTTA
1 CTTA
16265634 AGTCAACACA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16267410 original size:26 final size:26
Alignment explanation
Indices: 16267380--16267432 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16267370 CCAATATGAT
*
16267380 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
*
16267406 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
16267432 C
1 C
16267433 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:16268300 original size:26 final size:26
Alignment explanation
Indices: 16268271--16268323 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16268261 CCGGTCCGAT
*
16268271 CTTAGACTA-GGAATGAACTCCGTATG
1 CTTAGAC-AGGGAATAAACTCCGTATG
*
16268297 CTTAGACAGGGAATAAACTCTGTATG
1 CTTAGACAGGGAATAAACTCCGTATG
16268323 C
1 C
16268324 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATAAACTCCGTATG
Found at i:16271625 original size:26 final size:26
Alignment explanation
Indices: 16271586--16271638 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16271576 GTTGACTTAG
*
16271586 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGACTTCATTCCCAATCTAA
* *
16271612 GCATACGGACTTCATTCCTAGTCTAA
1 GCATACGGACTTCATTCCCAATCTAA
16271638 G
1 G
16271639 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAATCTAA
Found at i:16272525 original size:26 final size:26
Alignment explanation
Indices: 16272489--16272541 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16272479 GTTGACTTAG
* *
16272489 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAAATCCCAGTCTAA
16272515 GCATACGGAGTTAAATCCCAGTCTAA
1 GCATACGGAGTTAAATCCCAGTCTAA
16272541 G
1 G
16272542 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTAAATCCCAGTCTAA
Found at i:16272743 original size:903 final size:901
Alignment explanation
Indices: 16270715--16276288 Score: 6929
Period size: 902 Copynumber: 6.2 Consensus size: 901
16270705 GTTGGCTTAG
* * * *
16270715 GCATACGAAGATCATTCCCAGTCTAAGATCAGA-CAGA-CGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
16270778 CTTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGCGGCACCATCGCCAGAGCATCGCC-GA-
66 C-TCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * *** *
16270841 AGCCTGACCGGCGGCTTTGGGG-TTCTGGCGATCGGGGGGATGGGGGGGTGTGCACACATGATGT
130 AACCTGACCGACGGCATTGGGGTTTC-GGCGATC-GGGGGCCCGGGGGGTGTGCGCACATGATGT
** * * * * * *
16270905 GCGATGGGTGCCAGTACTTGGCCCTTATATTGGGCACCTATCTCTCATCAAGCCTTAAGAACCCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* * *
16270970 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAA
258 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
16271035 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
16271100 GTGCATGCCAAAAAAAAATACTACGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
387 ATGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
16271165 AAATTTTAAAAAATCCCAAACCGCAAAAAGTTTAAAAAATCATTAAAAATAGAAAATGAGTCGTC
451 AAATTTTAAAAAATCTCAAACCGCAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCATC
*
16271230 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
16271295 CATT-G-ACATGAAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCT
581 CATTGGCACAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
16271358 TGCGCATCCTC-TCTCTCTGGCTGGCGTAGT----GCCCGCCCGCCTGCCCGTTTGTTTCATCGG
644 TGCGCATCC-CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGG
* * * * ** *
16271418 TTGGCTTAGGCATATGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGTGGAAGCA
708 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGTAGCA
* * * * * * * * * *
16271483 GGATCGACAGCACGAAGAGGGGGACCCAACCAATCCCTGGCTTACGCATCCTGCCCCTTTGGCCG
773 GGATCGGCAGCACGCAGAGGAGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCG
* *
16271548 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
838 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
16271612 GCATACGGACTTCATTCCTAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
16271677 CTC-GAGCATGTGCTGGTG-CGTTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCGTCGCCGGA
66 CTCAG-GCATGTGCTGGTGCCG-CATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGA
* * *
16271740 GAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGAGTGTGCGCACATGATG
129 GAACCTGACCGACGGCATTGGGGTTTCGGCGATC-GGGGGCCCGGGGG-GTGTGCGCACATGATG
16271805 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
* * *
16271870 ACACCCGCATAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
257 ACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
16271935 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTGGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * **
16272000 TATGCATG-CTAAAAAAATACAAGGATCACGTCTACCAAGGTTAGGGCTGAAACTCCTTCCGAAA
386 TATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * **
16272064 AAATTTTAAAAAATCTCAGACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATC
451 AAATTTTAAAAAATCTCAAACCGCAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCATC
** *
16272129 TTGCCATGAAACTTCACCAGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
16272194 CATTGGCACATAAAAATATGAAGATGTGCCCAAACCCACCTATCACCCTATCGATCCACGGCTTG
581 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * **
16272259 CGCATCCCGTCACTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTTGTCGGTTG
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTG
* * *
16272324 GCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCAGGA
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGTAGCAGGA
* * * * * *
16272389 TCGGTAGCACGCAGAGGAGGACCCGACCTATCCCCAGCTTGCTCATCCCGCCCCTCTGGCTGGAT
776 TCGGCAGCACGCAGAGGAGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCT
* *
16272454 GACCACCCGCACGCTCGTTTCGTGCGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * * *
16272515 GCATACGGAGTTAAATCCCAGTCTAAGATCAGACCAGACCGAGCATTGCGGCAGTAGATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
16272580 CTCAGGCATGTGCTGGTGCCAGCATTTTTCTTCGTCGGAGCACCATCGTCGGAGCATCGCCGGAG
66 CTCAGGCATGTGCTGGTGCC-GCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
** * * * *
16272645 AACCTGACCGGTGGCATTGGGGTTTCGGTGATCGGGGGCACAGGGGGGTTTGCGCACATGATGAG
130 AACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGC-CCGGGGGGTGTGCGCACATGATGTG
*
16272710 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
*
16272775 ACTCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 AC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
16272840 GGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTTGGGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* * * * *
16272905 TGCATGCCAACAGAAATACAAGGATCACATCTACCAAGTTTAGGGCCAAAAATCCTTCCGAAAAA
388 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
16272970 ATTTTAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACCAGTCGA-C
453 ATTTT-AAAAAATCTCAAACCGCAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTC-ATC
* * *
16273034 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCGATAAAAGTGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
16273099 CATTCGCATGC-T-GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCT
581 CATTGGCA--CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* ** *
16273162 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCATCCGCTCGTTTTATCGGT
644 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGT
* * *
16273227 TGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATC-G----GACCGAGGGTTGCAGCAGCA-
709 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGTAGCAG
* * * * * * * * ** * **** ** * * *
16273286 CATGCTG-TGCTCG--G-GCATGTCCTGGTGCG-TACTTTTCTT-CAC--CGGGGCACTAT---C
774 GAT-CGGCAGCACGCAGAGGAGGACC-CGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCC
* * * ** * ** * * * * * * *** *
16273340 GTCGGAGCATCACCGGA-GAACCTGAC--CGG-CGACATTAGG-GTTCCGACGATCGGGGGCCGA
837 GGCTGAGCA-C-CCGCACGCTCGTTTCGTGGGTTGAC-TTAGGCATACGGA-GTTC--ATTCCCA
** *
16273400 GGGGGTAT
896 --GTCTAA
* * * * * ** *
16273408 GCGA-AGGGTGCTGGTTAATTCCCAGTCTAAGATCAGACCAGACCAAGCATTGTGGCAGCACATG
1 GC-ATA-CG-G--AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATG
* * * **
16273472 CTGGGCTCAGGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCGTCGTCGGAGCATCGTT
61 CTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCC
* * *
16273537 GGAGAACCTGACCGGCGGCTTTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
126 GGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATC-GGGGGCCCGGGGGGTGTGCGCACATGA
* *
16273602 TGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTTGAGAAC
190 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
*
16273667 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTG
255 TCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
16273732 AAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
319 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
16273797 TTTATGCATGCCAAAAAAAATAAAAGGATCACCTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
384 TTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* *
16273862 AAAAATTTTAAAAAATC-CAGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
449 AAAAATTTTAAAAAATCTCA-AACCGCAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTC
*
16273926 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
513 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*** * *
16273991 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGAC
578 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
16274056 TTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCCGCCCGCATGCCCGCCCGCCCATTTC
643 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCCG-CC-C--GCCCGCCCGCTCGTTTC
** * * * *
16274121 ATCATTTGGCTTAGACATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTACAG
703 ATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAG
* * * * * *
16274186 TAGCAGGATTGGCAGCACGCAGAGGGGGACCCGATCGATACCCGACTTGCACATCCCGCCACTCT
768 TAGCAGGATCGGCAGCACGCAGAGGAGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCT
* * * *
16274251 GGCCGGCTGAGCACCCGTACGCTCGTTTAGTGGGTTGAGTTAGGCATACAGAGTTCATTCCCAGT
833 GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
16274316 CTAA
898 CTAA
* * * * * * * *
16274320 GCATACAGAGTTCGTTCCCAATCTAAGATCAGACTGGACCAAGGATTTCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
16274385 CTCAGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * * *
16274450 ACATGACCGACGACATTGGGG-TTCTGACGATCGGGGGGGCCGGGGGGTGTGTGCACATTATGTG
131 ACCTGACCGACGGCATTGGGGTTTC-GGCGATC-GGGGGCCCGGGGGGTGTGCGCACATGATGTG
* * *
16274514 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCAG
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
*
16274579 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATG
259 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
16274644 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
* * * * *
16274709 GCATTCCAACAAAAATACAAGGCTCACGTCTACCATGTTTGGGGCCAAAACTCCTTGC-AAGAAA
389 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA-AAA
* * * *
16274773 ATTTTAAAAAATCTCAAACCGGAAAAAGGTTT-GAAAATCGTAAAAAATAGAAAACGAGTCGTCT
453 ATTTTAAAAAATCTCAAACCGCAAAAA-GTTTAAAAAATCGTGAAAAATAGAAAACGAGTCATCT
* *
16274837 TGCCATGAAACTTCACATGGAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** *
16274902 ATTGGAACATAGAAATATGAAGATGCACCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
582 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
16274967 GCATCCCATCTCTCTGGCCGGCATAGTGCCCAG-CTGCCCGCCCGCCCGTTCGTTTCGTCAGTTG
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-GCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTG
* * *
16275031 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGA-TCGAAGGTTGCAGCAGCAGG
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCAGTAGCAGG
* * * * *
16275095 ATTGGTAGCACGCAGA-GAGAGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGG
775 ATCGGCAGCACGCAGAGGAG-GACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGG
* ** * * *
16275159 CTGAGCACCCGCGCGCTAATTTCATGGGTTGACTTAGGCATACGGAGATCATTTCCAGTCTAA
839 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
16275222 GCATACGGAGTTCATTCCCAGTCTAAGATCGGGCCGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
16275287 CTC-GAGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGTGCATCGTCGGAG
66 CTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * *
16275351 AACCTAACCGACGGCATTGGGGTTTCGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTTCGGCGATCGG-GGGCCCGGGGGGTGTGCGCACATGATGTG
*
16275416 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGACCTCAG
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA-
* * *
16275481 C-CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCAATTAAAGTGTCTGAAAT
258 CACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
16275545 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGACTTTTTAGCTGAATTTTTTTA
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
** * *
16275610 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGTAGACAAAACACCTTCCGAAAAA
388 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
16275675 ATTTTAAAAAATCTCAAACCGCATAAAGTTTAAAAAATCGTGAAAAATAAAAAATGAGTCATCTT
453 ATTTTAAAAAATCTCAAACCGCAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
*
16275740 GCCATGAAACTTCACGTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
16275805 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACTAGCCTATCGATCTACGGCTTGCG
583 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** * **
16275870 CATCCCGTCTCTCTGGCCGGTGTAGTGCCCACCCGTTCGCCCACTTGCCCGCTCATTTTGTCGGT
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CC-C--GCCCGCTCGTTTCATCGGT
* * * * *
16275935 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCTACT-GTA
709 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGC-AGTAGCA
* * * *** *
16275999 GGATCGGCAGCAGGCTGAGAGG-GG-CCCGATCGATCCTCGGCTTATGCATCCCGGCCCTCTGGC
773 GGATCGGCAGCACGC--AGAGGAGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGC
* * * * * * *
16276062 CAGCTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATATGAAATTCATTCCCAGTCTA
836 CGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
16276127 A
901 A
* * * * ** *
16276128 GCATACGAAGTTCATT-CCAGTCTAAGATCGGATCGGACTGAGGGTTATGGCAGCACATGCTGAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
16276192 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGCCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* *
16276257 ACCTGACCAATGGCATTGGGG-TTCTGGCGATC
131 ACCTGACCGACGGCATTGGGGTTTC-GGCGATC
16276289 CGGTGATGCT
Statistics
Matches: 4047, Mismatches: 530, Indels: 192
0.85 0.11 0.04
Matches are distributed among these distances:
888 7 0.00
889 9 0.00
890 5 0.00
891 8 0.00
892 4 0.00
893 12 0.00
894 4 0.00
895 204 0.05
896 351 0.09
897 110 0.03
898 54 0.01
899 273 0.07
900 112 0.03
901 214 0.05
902 780 0.19
903 475 0.12
904 140 0.03
905 404 0.10
906 197 0.05
907 385 0.10
908 235 0.06
909 11 0.00
910 4 0.00
911 1 0.00
912 13 0.00
913 4 0.00
914 7 0.00
915 8 0.00
916 10 0.00
917 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGCCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCTCAAACCGCAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGTAGCAGGATCGGC
AGCACGCAGAGGAGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCA
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16274330 original size:26 final size:26
Alignment explanation
Indices: 16274294--16274346 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16274284 GTTGAGTTAG
*
16274294 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
16274320 GCATACAGAGTTCGTTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
16274346 G
1 G
16274347 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:16275225 original size:26 final size:26
Alignment explanation
Indices: 16275196--16275248 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16275186 GTTGACTTAG
*
16275196 GCATACGGAGATCATTTCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
*
16275222 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
16275248 G
1 G
16275249 ATCGGGCCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:16276153 original size:25 final size:26
Alignment explanation
Indices: 16276102--16276153 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16276092 GTTGACTTAG
*
16276102 GCATATGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
*
16276128 GCATACGAAGTTCATT-CCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
16276153 G
1 G
16276154 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:16278865 original size:26 final size:26
Alignment explanation
Indices: 16278836--16278888 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16278826 CTGGTCTGAT
* *
16278836 CTTAGACTGGTAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16278862 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16278888 C
1 C
16278889 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16279521 original size:862 final size:857
Alignment explanation
Indices: 16277252--16280104 Score: 3488
Period size: 872 Copynumber: 3.3 Consensus size: 857
16277242 TGTTCTGCCG
* * * * * * *
16277252 CAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTTCATATGCCTAAGCCAATCGACAAA
1 CAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAA
* ** *
16277317 ACAAGCGGGC--GGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
66 ACGAGCGGGCAGGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
** *
16277380 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATTTCTTCT
131 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
*
16277445 AAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
196 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
16277510 TTTTCACAATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTT
261 TTTTCACAATTTTTGAAACTTTTTGCGGTTCGAGA-TTTTTAAAATTTTTT--------G-----
* *
16277575 GCCCCAAACTCGGTAGACGTAATCCTTTTATTTTTGTTGGCATGCAAAAAAATATTCAGCTAAAA
312 GCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCAAAAAAATATTCAGCTAAAA
* *
16277640 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGGCACTTTAATAG
377 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
16277704 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGA
442 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGA
*
16277769 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGAGCGCACACC
507 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCGCACACC
* * *
16277834 GCCCCTGGCCCCCCATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATAATGCTCCGACG
572 GCCCC-GGCCCCCCATC-GCGGAACCCCAATGCCGCCGGTCAGGTTCTCC--T--GGC-CC--CG
* * *
16277899 ATGGTGCCCTGGCGAAGAAACATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAA
628 A--------T---GAAGAAAAATACAGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAA
16277964 CCC---T-T-G--G----T---CTGG--T----TC-G-AT-CTTAGACTGGGAATGAACTCCGTA
682 CCCTGGTCTGGTCGATCTTAGACTGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTA
* * *
16278006 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCCGGATGTGCAA
747 TGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCG-CCAGAGGGGCGGGATGCGCAA
* * * **
16278071 GCCGGGGATCGATCGGGTCCCCCTCTGCATGCCGCCGATCCTACTGTA
811 GCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTCCA
* ** * * *
16278119 GCAACCCTAGGTCCGATCCAATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAACCGATAA
1 -CAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAA
* * * * *
16278184 AATGAACGGGCAGGCGGGTGGGCACTAC-ACCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
65 AACGAGCGGGCA-G-GGGCGGGCACTACGTCGA-CCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * *
16278248 GATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGCC
127 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* * *
16278313 TTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCGAGACGACTCGTTTT
192 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
** *
16278378 CTATTTTTCAGGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTAAAAAAATTTTCGGAAGGAGC
257 CTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGAGATTTTT---AAAA-TTT----------
* * * * * *
16278443 TTTGGCCCCAAACTTGGTAGATGTGATCCTTATATTTTTTTTGGCATGCAAAAAAAAAATAAGCT
308 TTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCAAAAAAATATTCAGCT
* * *
16278508 AAAAACTCAAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAGTTTA
373 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
16278573 ATGGCTACTGGCAGCAAACCTGTAAAATCTTAAAGGCTCTTTAAAGG-GGTGTGAGTTCTCGAAG
438 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGAGGTGTGAGTTCTCGAGG
* * *
16278637 TTTGAAGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAAAACCCATCGCACATCATGTGCGC
502 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCGC
*
16278702 ACACCGCCCTCGGTCCCCCATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-CTGGCCCCGAT
567 ACACCGCCC-CGGCCCCCCATCG-CGGAACCCCAATGCCGCCGGTCAGGTTCTCCTGGCCCCGAT
* **
16278766 GAAGAAAAATACAGCACCAACACATGCCCGAGCCCAGAATGTGCTGCCAAAACCCTTGGTCTGGT
630 GAAGAAAAATACAGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC-TGGTCTGGT
*
16278831 CTGATCTTAGACTGGTAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCAAAGTC
694 C-GATCTTAGACTGG-AATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* *
16278896 AACCCATGAAACAAACGTGCGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
757 AACCCACGAAACAAGCGTGCGGGTGCTCAGCC-GCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* *
16278961 AGCCGGGTCCCCCTTTGCGTGCTGCCGATCCTGCTACCA
821 -GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT-CCA
* * * *
16279000 CAACCCTTGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTCTGCCTAAGCCAATCGACGAA
1 CAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAA
* * * *
16279065 ACGAGCGGG-A-GGGCAGGCATTACGTCGACCAGAGAGACGGGATGCACAAGCTGTGGATCGATA
66 ACGAGCGGGCAGGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
16279128 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
131 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
*
16279193 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTAT
196 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * * *
16279258 TTTCCATAATTTTTGAAACTTTTTACGGTTCGGGACTTTTTAAAA-TTTTTGCCCCCAAACTTGG
261 TTTTCACAATTTTTGAAACTTTTTGCGGTTCGAGA-TTTTTAAAATTTTTTGGCCCCAAACTTGG
* *
16279322 TAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTTGAAGTGTAC
325 TAGACGTGATCCTTTTATTTTTGTTGGCATGCAAAAAAATATTCAGCTAAAAACTCGAAGTGTAC
* *
16279387 AGGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
390 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
16279452 ACCTGTAAAATATCAAATGCTCTTTAAGGAGGTGTGAGTTTTCGAGGTTTGATGAGGGAAAGGGG
455 ACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
16279517 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGACCCCTC
520 GCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCGCACACCGCCCCGGCCCC-C
* * *
16279581 CGATCGCTGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGATGATGGTACCCCAA
584 C-ATCGC-GGAACCCCAATGCCG-C---C-GG---T-C-A-GGTTCTCC-----TGG--CCCCGA
* * *
16279646 CGAAGAAAAATACAGCACCAACACATGCCCGAGCCTAGCATGTGCTGCTGCAACCCTCGGTCTGG
629 TGAAGAAAAATACAGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT-GGTCTGG
* *
16279711 TCCGATCTTAGACTGGGAATGAACTCTGTTTGCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
693 T-CGATCTTAGACT-GGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* *
16279776 CAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCAAAAGGGCGGGATGCGCAAGCCGGGGAT
756 CAACCCACGAAACAAGCGTGCGGGTGCTCAGCC-GCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * *
16279841 CGGTCGGGTCCCCCTCTGCGTGCTGTCGATCTTGCTGTCA
820 C-GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT-CCA
* *
16279881 CAACCCTTGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAA
1 CAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAA
* ** *
16279946 ACGAGCGGGCAGGTGGTCGGGCGGGCACTACGTCGGCCAGAGAGGTGGGTTGCGCAA-CCTGTGG
66 ACGAGCGGGCA----G--GGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCC-GTGG
* *
16280010 ATCGATAGGGTGGTATGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
124 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
16280075 GGCTTGTAAATTCATACAATGGTCCCTTAA
189 GGCTTGTAAATTCATACAATGGTCCCTTAA
16280105 TGGCTACTGG
Statistics
Matches: 1726, Mismatches: 170, Indels: 157
0.84 0.08 0.08
Matches are distributed among these distances:
854 49 0.03
857 1 0.00
858 1 0.00
859 1 0.00
860 6 0.00
861 10 0.01
862 254 0.15
863 2 0.00
865 3 0.00
866 1 0.00
867 5 0.00
868 64 0.04
870 6 0.00
871 7 0.00
872 301 0.17
873 184 0.11
874 14 0.01
875 3 0.00
876 195 0.11
877 10 0.01
878 1 0.00
879 6 0.00
880 182 0.11
881 283 0.16
882 4 0.00
885 3 0.00
888 1 0.00
889 129 0.07
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (857 bp):
CAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAA
ACGAGCGGGCAGGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCACAATTTTTGAAACTTTTTGCGGTTCGAGATTTTTAAAATTTTTTGGCCCCAAACTTGGT
AGACGTGATCCTTTTATTTTTGTTGGCATGCAAAAAAATATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCGCACACCGCCCCGGCCCCCCA
TCGCGGAACCCCAATGCCGCCGGTCAGGTTCTCCTGGCCCCGATGAAGAAAAATACAGCACCAAC
ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTGGTCTGGTCGATCTTAGACTGGAATGAACT
CTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGT
GCTCAGCCGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTCGGGTCCCCCTCTGCGTGCTGCC
GATCCTGCTCCA
Found at i:16280493 original size:26 final size:26
Alignment explanation
Indices: 16280455--16280505 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16280445 GGTCTAATCT
* *
16280455 TAGACTGGTAATGAACTCTGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
16280481 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
16280506 CAAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:16282122 original size:26 final size:26
Alignment explanation
Indices: 16282093--16282146 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
16282083 GATCCGATCT
16282093 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
16282119 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
16282145 TA
1 TA
16282147 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:16283020 original size:26 final size:26
Alignment explanation
Indices: 16282991--16283043 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16282981 CCGGTCCGAT
16282991 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
16283017 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16283043 C
1 C
16283044 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16283490 original size:900 final size:895
Alignment explanation
Indices: 16281744--16289086 Score: 9290
Period size: 900 Copynumber: 8.3 Consensus size: 895
16281734 GCAAACCTGT
* *
16281744 AAAACTCGAAGTGTAAAAGATTTTGTGACCACTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
1 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * * *
16281809 TGGCTACTAGCGGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGTGTGAGTTGTCGAGCTTT
66 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTT
* *
16281874 GATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACA
131 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * *
16281939 CCGCCCCTCGGCCCCCCAATCGTCGGAACCCCAATGC-CAGCGGTTAGGTTCTCCGGTGATGCTC
196 -C-CCCC-CGGCCCCCCGATCGT-GGAACCCCAATGCGC--CGGTCAGGTTCTCCGGCGATGCTC
* * *** * * * * *
16282003 CGACGATGGTTCCCC-AGTGAAGAAAAAAATGGCACCAACGCATGCCCGAGCCTAGTATGTGCTA
255 CGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* *
16282067 CCGCAACCCTC-GATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAGACTGGGAAT
319 CCGCAACCCTCAG-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* *
16282131 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGCCAGAGGGGCG
383 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCGGTCGGCCAGAGGGGCG
* * * *
16282196 GGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTATGTGCTGTCGATCCTGCTACTGCAACCC
448 GGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTACTGCTGCAACCC
** * *
16282261 TTGGTCCGGTCTAATCTTAGACTGGGAATGAACTCTGTCTGCCTAAGCCAACCGACGAAACGAGC
513 TCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * * * *
16282326 GGGCGGGTGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCATGGATCGATAGGAT
578 GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* ** *
16282391 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGATAATTTTATGGCTTGTAAAT
643 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
* * *
16282456 TCATACAATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGTAAGACGACTCGTTTTCTATATTT
708 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * **
16282521 CATGATTTTTGAACCTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGGAGGAGTTTT-GCTC
773 CATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC-C
* *
16282585 CCAAACCTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
837 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
16282644 AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTCAGACACTTTA
1 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTA
* * *
16282709 ATGGCTACTGGCAGCAAACCTATAAAAGCTCAAATGCTCTCTAAGGGAGTGTGAGTTCTCGAGGT
65 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-GTGTGAGTTCTCGAGGT
*
16282774 TTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
129 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* *
16282839 CACCCCCCGGCCCCCCCAATCGCTGGAACCCTAATGCGGCCGGTCAGGTTCTCCGGCGATGCTCC
194 CACCCCCCGG-CCCCCCGATCG-TGGAACCCCAATGC-GCCGGTCAGGTTCTCCGGCGATGCTCC
* * * *
16282904 GGCGATGGTGCCCCGACGAAGAAAAATGCGGCGCCAGCACATGCCCGAGCCTAGCATGTGCTACC
256 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
** *
16282969 ATAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
321 GCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
**
16283034 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT-GAACCGGCCAGAGGGGCGGG
386 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCG-GTCGGCCAGAGGGGCGGG
* * * ** *
16283098 ATGCGCAAGCAAGGGATCAGTCGGGTCCACCTCTACGTGCTGCCGATCCTACTGCTACAACCCTC
450 ATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTACTGCTGCAACCCTC
* *
16283163 AGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAACGAGCAG
515 AGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
** * * * *
16283228 GCGGGCGGGCGGGCACTACGTTGGCCAGAGAGACGGGATCCACAAGCCATGGATCGATAGGATGG
580 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * **
16283293 TAGGTGGGTTTTGGCACATCTTCATATTTCTGTGTGCCAATGATATTTTTATGGCTTGTAAATTC
645 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
* * *
16283358 ATAGAATGGTCCCTTAAGCCTTCACGCGAAGTTTCATGGTAAGACGACTCGTTTTCTATTTTTCA
710 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * *
16283423 TGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGTCCCCA
775 TGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCA
*
16283488 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
840 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
16283544 AAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTGCCCATTTCAGACACTTTAA
1 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
16283609 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTATCGAGGTT
66 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTT
*
16283674 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC
130 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* *
16283739 ACCCCCCCGGACCCCCTGATCGTCGGAACCCCAATGCCGCCAGTCAGG---T-------T-CTCC
195 A-CCCCCCGG-CCCCCCGATCGT-GGAACCCCAATG-CGCCGGTCAGGTTCTCCGGCGATGCTCC
*
16283793 GACGATGGTGCCCC-AGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGC
256 GACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* *
16283857 CGCAA-CC-C--T-CGGT-C---C----A----G--T----T-CG-AT-CTTAGATTAGGAATGA
320 CGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * ** * *
16283896 ACTCCGTATGCCTAAGTCAA-GCACGAAACGAGCATGCGGGTTACTCGGCCGGCCAGAGAGGCGG
385 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG-CGCTCGGTCGGCCAGAGGGGCGG
* * * * * *
16283960 GATGCGCAAGCCGGGGATCGGTTGGGTCCCCTTCTGTGTGCTGCCGATCCTGCTGCCGCAACCTT
449 GATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTACTGCTGCAACCCT
* * * * *
16284025 CAATCTGGTCTAATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAATCGACAAAACGAACG
514 CAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * * * *
16284089 GGCAGGCAGGCAGGCGGGCACTACGTCGGCCAGAGAAACGGGATGCACAAGTCGTGGATCGATAG
579 GGC--G--GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * * * * * * * *
16284154 AGTGGTAGGTGGGTTTAGGTAGAACTTCATATTTTTACGTGTCAATGCAATTTTT-TGACTTGTA
640 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
16284218 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
705 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * **
16284283 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTTA
770 TTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG
* *
16284348 CCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAACTTCAGCTA
835 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
16284409 AAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
1 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
16284474 TGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTT
66 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGTGTGAGTTCTCGAGGTT
**
16284539 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTATGCAC
130 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* *
16284604 ACCCCCCCGGCCCCCCGGATCGTCAGAACCCCAACGCCGCCGGTCAGGTTCT-C--CG--G-T--
195 A-CCCCCCGGCCCCCC-GATCGT-GGAACCCCAATG-CGCCGGTCAGGTTCTCCGGCGATGCTCC
**
16284661 ---GATGGTGCCCCGGGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
256 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * * *
16284723 ACAACCCTCGGTCCGGTCCGATCTTAGACTGTGAATGAACTCCGTATGCTTAGACTGGCAATGAA
321 GCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* *
16284788 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCGGTCGG-CAGAGGGGCAGGA
386 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCGGTCGGCCAGAGGGGCGGGA
* * ** * * *
16284852 TGCGCAAGTCGGGGATCGGTTAGGT-CCCCTCT-TCATGCTGCCAATCCTACTGCCGCAACCCTC
451 TGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGT-GTGCTGCCGATCCTACTGCTGCAACCCTC
* * * *
16284915 GGTCCGGTCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAATGAGTGG
515 AGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---G
* * *
16284980 CCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGATGGGATGTGCAAGCCGTGGATCGATTGG
577 -CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * * **
16285045 GTAGTAGGTCGGTTTAGG--CATCTTCATATTTCTGCATGCCAATGCCATTTTTATACCTTGTAA
641 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
16285108 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
706 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* *
16285173 TTCAGGATTTTTGAAACTTTTTACGGTTCGGCATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC
771 TTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC
* * * *
16285238 CGCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACACAAAAATTCAGCTA
836 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
16285298 AAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGACAAAAGTGTCCCCATTTCAGACACTTTAA
1 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * * *
16285363 TGGCTACTGGCAGCAAACCTATAAAATCTGAAATGCTTTTTAAGGGGGAGTGGGTTCTCGAGGTT
66 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTT
* *
16285428 TGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCG-----CA--T-----C
130 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
** * * **
16285481 A----CCGGAACCCC-A--GT-G----CC-AT----CGGTGAGGTTCTCCGACGATGCTCCGGTG
195 ACCCCCCGGCCCCCCGATCGTGGAACCCCAATGCGCCGGTCAGGTTCTCCGGCGATGCTCCGACG
** ** * *
16285529 ATGGTGCGGC-AGCGAAGAAAAATATGGCACTAGCACATGCCCAAGCCCAGCATGTGCTGCCGCA
260 ATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * *
16285593 ACCCTCAGTCCAGTCTGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTC
324 ACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
*
16285658 CGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCGGTCGGCCAGAGGGGCGGGATGC
389 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCGGTCGGCCAGAGGGGCGGGATGC
* * * * * *
16285723 GCAAGCCGGGGATCGGTCGGGTCCCCCTTTGTATGCTGCCGATCCTACTGCTGTAACCCTCAATT
454 GCAAGCCAGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTACTGCTGCAACCCTCAGTC
* * * * *
16285788 CGGTC-CATCTTAGACTAGGAATAAACTCCATATGCCTAAGCCAACCGATGAAACGAGCGGGCGG
519 CGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
* * * *
16285852 ACAGGC-GGCACTACGCCAGCCAGAAAGACGGGATGCGCAAGCCGT-GATCGATAGGGTGGTAGG
584 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *
16285915 TAGGTTTAGGCACATCTTCATATTTCTGCATGCAAATGCCATTTTTATGGCTTGTAAATTCATAC
649 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
16285980 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
714 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * *
16286045 TTTGGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC-AGAAGGAGTTTTGGCCCCAAAA
779 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAAC
* * *
16286109 TTGGTAGACGTGATCGTTGTATTTTTGTTGGCAAGCACAAAACAATTCAGCTA
843 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
16286162 AAAACTCGAAGTGCACAAGATTTTGTGACCATTTGCAAAAAGTGTCCCCATTTCAGACACTTTAA
1 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
16286227 TGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTT
66 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGTGTGAGTTCTCGAGGTT
*
16286292 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA-
130 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * ** * * * *
16286356 A----AC--CCCCTCGATCGCCGAACCCCAATGCCACCGGTCAGGTTCTTCGACGATGCTCCGAT
195 ACCCCCCGGCCCCCCGATCGTGGAACCCCAATG-CGCCGGTCAGGTTCTCCGGCGATGCTCCGAC
* * *
16286415 GATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGTG-CCAGCATGTGCTGCCGTA
259 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * * *
16286479 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAACGAACTTCGTATGCTTAGATTGGGAATGAACTC
324 ACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * *
16286544 CGTATGCCTAAGTCAACCCACGAAACTAGCGTGCGGGCGCTCAGTCAGCCAGAGGGGCGGGATGC
389 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCGGTCGGCCAGAGGGGCGGGATGC
* ** * * * **
16286609 GGAAGAGAGGGATCGGTCGAG-CCCCC-CTGCGTGCTGTCGAT-CTGA--GCTG------TTGGT
454 GCAAGCCAGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCT-ACTGCTGCAACCCTCAGT
* * * * * * * *
16286663 TCGGTCTGATCTTAAACAGGGAATGAACTCTGTATGCTTAAGGCAACCGATGAAACGAGCGGGCG
518 CCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
*
16286728 GGCGGGCGTGCGGGCACGACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
583 GGC--G-G-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* **
16286793 GTAGGTGAGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATT
644 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT
16286858 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
709 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * *
16286923 ATGATTTTGGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC-AGAAGGAGTTTTGGCCC
774 ATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCC
* * * *
16286987 CAAAATTGGTAGACGTGATCGTTGTATTTTTGTTGGCAAGCACAAAACAATTCAGCTA
838 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
16287045 AAAACTCGAAGTGCACAAGATTTTGTGACCATTTGCAAAAAGTGTCCCCATTTCAGACACTTTAA
1 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
16287110 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGTGTGAGTTCTCGAGGTTT
66 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTT
* * * *
16287175 GATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCACAAATCATGTGCGCAGA
131 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * *
16287240 CCCCCCGGCCCCCTCGACCGACGGAACCCCAATGCCGTCGGTTAGGTTCT-C--CG--G-T----
196 CCCCCCGGCCCCC-CGATCG-TGGAACCCCAATG-CGCCGGTCAGGTTCTCCGGCGATGCTCCGA
* * * ** *
16287295 -GATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATTCCCAAGCCCAATATGTGCTACCGC
258 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * *
16287359 AACACTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
323 AACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * * *
16287424 CCATATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAG-CAGCCAGAAGGGCGGGATG
388 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCGGTCGGCCAGAGGGGCGGGATG
* * * * *
16287488 CGTAAGCCAGGGATCGATC-GGTCCCCCTCTGTGTGCTGCTGATCCTGCTACTGCAACCCTCAGT
453 CGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTACTGCTGCAACCCTCAGT
* * * * *
16287552 CCAGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAATCGACGAAATGAGCGGGCG
518 CCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
* * * *
16287617 GGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGACGCGCAAGCCCTGGATCGATAGGGTGATAG
583 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * * *
16287682 GTGGGTTTAAGCACATCTTCATATTTCTGTGTGCCAATGCCACTTTTATGGCTTGTAAATACATG
648 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
16287747 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTTTTTTTCACGA
713 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* ** * * * *
16287812 TTTTTGAAACTTTTTACGGTTTGATATTTTTTAAAATTTTTTTGGAAGGATTTTTCAG-CCCAAA
778 TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTT-GGCCCCAAA
* *
16287876 CTTGGTAGACGTGATCCCTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
842 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
16287930 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCATACACTTTAA
1 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * * *
16287994 TGGCTACCGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTGTCAATGTT
66 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTT
* * *
16288059 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGTGGAC
130 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* *
16288124 ACCCCCCGG-CCCCC--TC---G-------AT----C-GTCAGGTTCTCCGGTGATACTCCGACG
195 ACCCCCCGGCCCCCCGATCGTGGAACCCCAATGCGCCGGTCAGGTTCTCCGGCGATGCTCCGACG
* * * *
16288171 ATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATG-CTGAGCCCAGCATGTGCTGCCACAA
260 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
16288235 CCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCC
325 -CC-C--T-CA----G-TC-----C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCC
* * *
16288300 GCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCAC
364 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * *
16288365 TCGGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTTTGTATGCTGCC
429 TCGGTCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCC
* * * * ** * * *
16288430 GATCCTACTGCCGTAACCCTCAATTCGGTCCGATCTTAGACTAGGAATAAACTCCATATGCCTAA
494 GATCCTACTGCTGCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * * *
16288495 GCCAATCGACGAAACAAGCGGGTGGGCTGGCGGGCACTACGCCAGCGAAAGAGATGGGATGCGCA
559 GCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
16288560 AGCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
624 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* *
16288625 ATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGA
689 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
16288690 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACCTTTTGCGGTTTGGGA-TTTTTAAAATTTTT
754 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* *
16288754 TC-AGAATGAGTTTTGGCCCCAAACATT-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCATA
819 TCGA-AAGGAGTTTTGGCCCCAAAC-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
16288817 AAAAAATTCAGCTA
882 AAAAAATTCAGCTA
* *
16288831 AAAACACGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
1 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
16288896 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTT
66 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG-GGTGTGAGTTCTCGAGGTT
**
16288961 TGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCATAACCCAAT-GCACATCATGTGCGCA
130 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC-ATCGCACATCATGTGCGCA
* *
16289024 CACCCCCCTCGGCCCCCCCGATCGTAGGAACCCCAATGCTGCCCGTCAGGTTCTCTGGCGATG
194 CA-CCCCC-CGG-CCCCCCGATCGT-GGAACCCCAATGC-GCCGGTCAGGTTCTCCGGCGATG
16289087 GTGCCCCGAC
Statistics
Matches: 5678, Mismatches: 553, Indels: 400
0.86 0.08 0.06
Matches are distributed among these distances:
856 11 0.00
857 1 0.00
859 2 0.00
861 2 0.00
862 86 0.02
863 161 0.03
864 412 0.07
865 476 0.08
866 98 0.02
867 162 0.03
868 83 0.01
869 41 0.01
870 11 0.00
871 2 0.00
872 9 0.00
873 3 0.00
874 21 0.00
875 39 0.01
876 11 0.00
877 55 0.01
878 2 0.00
879 2 0.00
880 83 0.01
881 131 0.02
882 127 0.02
883 375 0.07
884 94 0.02
885 403 0.07
886 156 0.03
887 66 0.01
888 35 0.01
889 529 0.09
890 144 0.03
891 66 0.01
892 19 0.00
894 5 0.00
895 1 0.00
897 1 0.00
898 4 0.00
899 142 0.03
900 848 0.15
901 252 0.04
902 477 0.08
903 3 0.00
905 5 0.00
907 2 0.00
911 1 0.00
918 2 0.00
923 1 0.00
924 16 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (895 bp):
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCCGGCCCCCCGATCGTGGAACCCCAATGCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGA
TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
CCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCGGTCGGCCAGAGGGGCGGGATGCGC
AAGCCAGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTACTGCTGCAACCCTCAGTCCG
GTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTG
GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
Found at i:16284774 original size:26 final size:26
Alignment explanation
Indices: 16284745--16284797 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16284735 CCGGTCCGAT
16284745 CTTAGACTGTG-AATGAACTCCGTATG
1 CTTAGACTG-GCAATGAACTCCGTATG
16284771 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
16284797 C
1 C
16284798 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:16285648 original size:26 final size:26
Alignment explanation
Indices: 16285612--16285664 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16285602 CCAGTCTGAT
16285612 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
16285638 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
16285664 C
1 C
16285665 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:16286534 original size:26 final size:26
Alignment explanation
Indices: 16286498--16286550 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16286488 CCGGTCCGAT
*
16286498 CTTAGACTGGGAACGAACTTCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
* *
16286524 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
16286550 C
1 C
16286551 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:16287408 original size:26 final size:26
Alignment explanation
Indices: 16287379--16287431 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16287369 CTGGTCCGAT
*
16287379 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16287405 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16287431 C
1 C
16287432 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16288282 original size:26 final size:26
Alignment explanation
Indices: 16288253--16288331 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
16288243 CCAGTCCGAT
16288253 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
16288279 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
16288305 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
16288331 C
1 C
16288332 CTAAGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:16290426 original size:865 final size:875
Alignment explanation
Indices: 16289149--16293339 Score: 4589
Period size: 898 Copynumber: 4.8 Consensus size: 875
16289139 CGGGTCGCCA
* * * ** ** * *
16289149 TCTACGTGCTGTCGATCCTGCTACTGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAAGGAAC
1 TCTACGTGCTGCCGATCCTACTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAAC
** * * * *
16289214 TCCGTATGCCTAAGCCAACTAATGAAAAGAACAGGCGGGCGGGTGGGCGGGCACTACACTGGCTA
66 TCCGTATGCCTAAGCCAACCGACGAAACG---A-GCGGGC-GGTGGGCGGGCACTACAC-CGCCA
* * * * **
16289279 GAGAGATGGGATGTGCAAGCTGTTGATCGATATCGTGGTAGGTGGGTTTAGGCACATCTTCATAT
125 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*
16289344 TTCTGCATGCCAATGCCA----T-T--C---------ATACAATGGTCCCTTAAGCCTTCACGTG
190 TTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTATACAATGGTCCCTTAAGCCTTCACGTG
* * *
16289393 AAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCACT-ATTTTTGAAACTTTTTACGGTTGGG
255 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGA-TTTTGAAACTTTTTACGGTTTGA
* * * * * *
16289457 GATTTTTTAAAATTTTTTCGGAAGGATTTTTGTCCCCAAACTTGGTAGATGTGATCCTTGCACTT
318 GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* *
16289522 TTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
383 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGA
*
16289587 AAAAAGTGTCCCGATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
448 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * *
16289652 TCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGTG-ACTATAAGGACCAAGTA
513 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG-GCAATATAAGGGCCAAGTA
* * * *
16289716 CCAGCACCCATCACACATCTTGTCCGCACACCCCCTCGGCCCCCCTGATCGTCGGAACCCCAATG
577 CCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATG
* ** *
16289781 CCACCGGTCAGGTT-TCTGGTGATGCTCCGGTGATGGTGCCCCGACGAAGACAAATGTGGCACCA
642 CCACCGGTCAGGTTCTCTGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGACACCA
* * *
16289845 GCA-CATGCCTGAGCCTAGCAAGTGCTGCCGCAACCCTGGGT-TC-GG-T-CTGAT-CTTAGACT
707 GCACCATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTGGGTATCTGGATACCGATGCTTAGACT
* * * *
16289904 GGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTTCTCAGTCGGCTAGA
772 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGTCGGCCAGA
*
16289969 GGGGCGGGATGCGCAAGCCAGGGATTGGCCGAGTCCCCC
837 GGGGCGGGATGCGCAAGCCAGGGATCGGCCGAGTCCCCC
* * * **
16290008 TCTACGTGCTGTCGATCCTACTACCACAACCCT-GATCCAGTCTGATCTTAGACTAGGAATGAAC
1 TCTACGTGCTGCCGATCCTACTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAAC
* *
16290072 TCCATATGCCTAAGCCAACCGACGAAACGAGCGGGC-G-GGG-GGGCACTACGCCGCCAGAGAGA
66 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGTGGGCGGGCACTACACCGCCAGAGAGA
* * * *
16290134 CGGGATGCGCAAGCGGTGGATCGATAGGGTGGAAGGTTGGGCTTAGGCACATCTTCATATTTCTG
131 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG-TGGGTTTAGGCACATCTTCATATTTCTA
* * * * *
16290199 CATGCCAATGCCATTTTTATGGCTTCTGAGTTATACAATGATCCTTTAAGCCTTCACGTGAAGTT
195 CATGCCAATGCCATTTTTATGGCTTGTAAATTATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * *
16290264 TCATGGCAAGACGACTCGATTTCTATTTTTCATGATTTCTGAAAC-CTTTACGGTTTGAGAATTT
260 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT-TGAAACTTTTTACGGTTTGAGATTTT
16290328 TTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
324 TTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* *
16290393 GCATGCACAAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
389 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAG
16290458 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
454 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
16290523 AGGGGGTGTGAGTTATCGAGGTTTGAT-----A-A--GGG----ATACGGGCCAAGTACCAGCAC
519 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAATATAAGGGCCAAGTACCAGCAC
* * * *
16290576 CCATTGCACATCATGTGCGCACACCCCC-CGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGA
584 CCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCACCGG
* * * * * * * *
16290640 CCAAGTTCTC-GATAATGCTCAGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCATCTT
649 TCAGGTTCTCTGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACCAT
* * * * * * *
16290704 GCCCGTGCCCAACATGTGCTGCTGTAACCCT-CG-ATCTGG-T-CCGAT-CTTAGACTGAGAATG
714 GCCTGAGCCCAGCATGTGCTGCCGCAACCCTGGGTATCTGGATACCGATGCTTAGACTGGGAATG
* * * * *
16290764 AACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGTGCTCAGCCTGCCAAAAGGGCGG
779 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGTCGGCCAGAGGGGCGG
* * ** *
16290829 GATGCACAAGCCGGGGATCGATCGGGTCCCCC
844 GATGCGCAAGCCAGGGATCGGCCGAGTCCCCC
** * *
16290861 TCTACGTGCTGCCGATCCTGTTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAC
1 TCTACGTGCTGCCGATCCTACTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAAC
* * * *
16290926 TCCATATGCCTAAGCCAATCGACGAAACGAGCGGGCAGGTGGGCGGGCGGGCACTACGTCGGCCA
66 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGT----GGGCGGGCACTAC-ACCGCCA
* * * *
16290991 GAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGATAGGTGGGTTTGGGCACATCTTTATAT
125 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * *
16291056 TTCTACGTGCCAATGCCATTTTTTTGGCTTGTAAATGCATACAATGGTCCCTTAAGCCTTCACGT
190 TTCTACATGCCAATGCCATTTTTATGGCTTGTAAAT-TATACAATGGTCCCTTAAGCCTTCACGT
** *
16291121 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGTGGTTTGG
254 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT-GAAACTTTTTACGGTTTGA
* * **
16291186 GATTTTTTTAAATTTTTTC-AGAAGCAGTTTTCACCCCAAACTTGGTAGACGTGATCCTTGTATT
318 GATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * * *
16291250 TTTCTTGGCATGCATAAAAAAATTTAGCTAAAAACTTGAAGTGTACAAGATTTTAC-GACCATTT
382 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT-CTGACCATTT
* * * *
16291314 GAAAAAAATGTCCCCATTTCCA-ACACTTTTATAGCTACTGGCAGCAAACCTATAAAATCTCAAA
446 GAAAAAAGTGTCCCCATTT-CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
*
16291378 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAA
510 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-CAATATAAGGGCCAA
* * ** *
16291443 GTACCAGCACCCATCTCACATCATGTGCGCACACCCCCTCGG-CCCCCCAATAATCGGGACCCCA
574 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGTCGGAACCCCA
* ** **
16291507 ATG-CAGCCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGAC
639 ATGCCA-CCGGTCAGGTTCTCTGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGAC
* * * *
16291571 AGCAGCA-CGTG-GTCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTAGTCTGATCTTAGAGT
703 ACCAGCACCATGCCT-GAGCCCAGCATGTGCTGCCGCAACCCT-GG----G--T-ATC------T
* * *
16291634 GGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAATG
753 -GG-AT--A--CC-GATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * *
16291699 AGCGTACGGGCGCTCAGTCGACTAGA-GGGCGGGATGTGCAAGCCAGGGATCGGTCGGGTCCCCC
811 AGCGTACGGGTGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGAGTCCCCC
** * * * * *
16291763 TCTGTGTGCTACCGATCCAACTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTA-GAATGAAC
1 TCTACGTGCTGCCGATCCTACTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAAC
** * *
16291827 TCCGTATGCCTAAGCCAACCGATC-TTA-GA-CTGGGAATGAGCGGGCGGGCACTACACCAGCCA
66 TCCGTATGCCTAAGCCAACCGA-CGAAACGAGC-GGG--CG-GTGGGCGGGCACTACACC-GCCA
*
16291889 AAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
125 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* *
16291954 TCCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGG
190 TTCTACATGCCAATGCCATTTTTATGGCTTGTAAATT-ATACAATGGTCCCTTAAGCCTTCACGT
* * * *
16292019 GAACTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA
254 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTGAAACTTTTTACGGTTTGA
* *
16292084 GATTTTTTAAAATTTTTTC-AGAAGGATTTTTGG--CC---CTTGGTAGACGTGATCCTGGTATT
318 GATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * *
16292143 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTCTAACCATTTG
382 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTG
16292208 AAAAAAGTGTCCCCATTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
447 AAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
**
16292273 GCTCTTTAATTGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
511 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-CAATATAAGGGCCAAG
* *
16292338 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCACCTGGCCCCCCCGATCGTCGGAATCCC
575 TACCAGCACCCATCGCACATCATGTGCGCACACCCCC-TC-GGCCCCCCCGATCGTCGGAACCCC
* * * * *
16292403 AAAGCCACCGGTCAGGTTCTCCGACAT-ATGGCTCC-GTGAATGGTGCGCGGTA--AAGAAAAA-
638 AATGCCACCGGTCAGGTTCTCTG--GTGAT-GCTCCGGTG-ATGGTGCCCCG-ACGAAGAAAAAT
* * ** * *
16292463 ACGACGACCAACACCAT-CCTGAGCCCAG-ATGTGTTGCCGGTCCTGCGTCTGAATCTGATCATA
698 ACGAC-ACCAGCACCATGCCTGAGCCCAGCATGTGCTGCC-G--CAAC-CCTG-----GGT-AT-
* * *
16292526 GCCTGGGAATAAAACACCGTATGCGTTACAAT-GGAATGAAC-CTGTATGCCATAA-TCAACCC-
751 --CT-GG-AT-----ACCG-ATGC-TTAGACTGGGAATGAACTCCGTATGCC-TAAGTCAACCCA
* * *** * ** *
16292587 TGAAAACGAGCGTTCGCGCAACATCAGTTCTGCCAGAGGGGCGGGGATTTGCAAGCCAGGCAATC
804 CG-AAACGAGCGTACG-GGTGC-TCAG-TCGGCCAGAGGGGC-GGGATGCGCAAGCCAGG-GATC
16292652 -GCC-AGGTTCCCCC
863 GGCCGA-G-TCCCCC
* * * * * ** * *
16292665 GCTGCG-GCTGCCTAT-CT-C-AACGTAACCCTCAATTTGGT-TCAATCTTAGACTAGGAATGAA
1 TCTACGTGCTGCCGATCCTACTACCGCAACCCTCGGTCTGGTCT-GATCTTAGACTAGGAATGAA
* *
16292725 CTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGACGGGTGGGCGGGCACTACACCTGCT
65 CTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GG-C-GGTGGGCGGGCACTACACC-GCC
* *
16292790 AGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATA
124 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*
16292855 TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAATGGTCACTTAAGCCTTCAC
189 TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATT-ATAC-AATGGTCCCTTAAGCCTTCAC
* * *
16292920 GTGAAGTTTCATGGCAAGACGACTGGTTTTCTATTTTTCGTGATTTTCAAAACTTTTTGA-GG-T
252 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT-GAAACTTTTT-ACGGTT
* * * *
16292983 TCAGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGT
315 TGA-GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
16293048 ATTTTTGTTGGCATGCACAAAAAAATTTC-GCTAAAAACTCGAAGTGTACAAGATTTTCTGACCA
379 ATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCA
* *
16293112 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTCATGGCTACTAGCAGCAAACCTGTAAAATCTCA
443 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
16293177 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
508 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-CAATATAAGGGCC
* * * * *
16293242 AAGTACCAGCACCCATCGCACATCGTGTGCACACACCCCCCTCGGCCCCGCCCGATTGCCGGGAC
572 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCTCGGCCCC-CCCGATCGTCGGAAC
* * * *
16293307 CCCAATGCCGCTGTTCAGGTTCTCTGGCGATGC
635 CCCAATGCCACCGGTCAGGTTCTCTGGTGATGC
16293340 CCCGTGGATC
Statistics
Matches: 2835, Mismatches: 343, Indels: 262
0.82 0.10 0.08
Matches are distributed among these distances:
849 38 0.01
850 50 0.02
851 3 0.00
852 85 0.03
853 202 0.07
854 69 0.02
855 2 0.00
856 2 0.00
857 3 0.00
858 50 0.02
859 31 0.01
860 1 0.00
861 3 0.00
862 60 0.02
863 117 0.04
864 215 0.08
865 232 0.08
866 68 0.02
869 1 0.00
870 1 0.00
872 3 0.00
876 1 0.00
877 102 0.04
878 43 0.02
883 1 0.00
887 3 0.00
892 1 0.00
893 97 0.03
894 143 0.05
895 2 0.00
896 37 0.01
897 67 0.02
898 277 0.10
899 63 0.02
900 16 0.01
901 61 0.02
902 230 0.08
903 165 0.06
904 1 0.00
905 5 0.00
906 8 0.00
907 173 0.06
908 100 0.04
909 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (875 bp):
TCTACGTGCTGCCGATCCTACTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAAC
TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGTGGGCGGGCACTACACCGCCAGAGAGA
CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
ATGCCAATGCCATTTTTATGGCTTGTAAATTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTGAAACTTTTTACGGTTTGAGATTTTTT
AAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTG
TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAATATAAGGGCCAAGTACCAGCACCC
ATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCACCGGTC
AGGTTCTCTGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACCATGC
CTGAGCCCAGCATGTGCTGCCGCAACCCTGGGTATCTGGATACCGATGCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGTCGGCCAGAGGGGCGGGA
TGCGCAAGCCAGGGATCGGCCGAGTCCCCC
Found at i:16291662 original size:26 final size:26
Alignment explanation
Indices: 16291626--16291678 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16291616 CTAGTCTGAT
*
16291626 CTTAGAGTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16291652 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16291678 C
1 C
16291679 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16293820 original size:530 final size:530
Alignment explanation
Indices: 16292810--16293868 Score: 1712
Period size: 530 Copynumber: 2.0 Consensus size: 530
16292800 GATGCGCAAG
*
16292810 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTACATGCCAATGCCAT
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
*
16292875 TTTTATGGCTTGTAAATTCATACAAATGGTCACTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
66 TTTTATGGCTTGTAAATTCATACAAATGGTCACTTAAGCCTTCACGTGAAGTTTCATCGCAAGAC
* * * * * * *
16292940 GACTGGTTTTCTATTTTTCGTGATTTTCAAAACTTTTTGAGGTTCAGGATTTTTTTAAATTTTTT
131 AACTCGTTTTCTATTTTTCATAATTTTCAAAACTTTTTAAGGTTCAGGATTTTTTAAAATTTCTT
16293005 CGGAAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
196 CGGAAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
16293070 AAATTTCGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTC
261 AAATTTCGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
16293135 AGACACTTTCATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
326 AGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGAGAG
16293200 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
391 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* ** * * *
16293265 CGTGTGCACACACCCCCCTCGGCCCCGCCCGATTGCCGGGACCCCAATGCCGCTGTTCAGGTTCT
456 CATGTGCACACACCCCCCTCGGCCCC-CCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCT
* *
16293330 CTGGCGATGCC
520 CCGACGATGCC
***
16293341 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCAT
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
*
16293406 TTTTATGGCTTGTAAATTCATAC-AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGAC
66 TTTTATGGCTTGTAAATTCATACAAATGGTCACTTAAGCCTTCACGTGAAGTTTCATCGCAAGAC
* *
16293470 AACTCGTTTTCTATTTTTCATAATTTTTAAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTCTT
131 AACTCGTTTTCTATTTTTCATAATTTTCAAAACTTTTTAAGGTTCAGGATTTTTTAAAATTTCTT
* *
16293535 CGGAAGGATTTTTGGCCCCAAAC-TCGGTAGACTTGATCCTTGTATTTTTGTTGGCATGCACAAA
196 CGGAAGGAGTTTTGGCCCCAAACTTC-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * * *
16293599 AAAA-TTCATCTAAAAACTCGAAGTGTACAGGATTTTGTGACCGTTTGAAAAAAGTTTCCCCATT
260 AAAATTTC-GCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATT
*
16293663 TCAGACACTTTAATGGGTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGAG
324 TCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGAG
*
16293728 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
389 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
16293793 ATCATGTGCGCACACCCGCCC-CGGCCCCCCCGATCATCGGAACCCCAATGTCGCCGGTCAGGTT
454 ATCATGTGCACACACCC-CCCTCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTT
16293857 CTCCGACGATGC
518 CTCCGACGATGC
16293869 TCCGACGATG
Statistics
Matches: 487, Mismatches: 38, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
529 44 0.09
530 356 0.73
531 87 0.18
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (530 bp):
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAAATGGTCACTTAAGCCTTCACGTGAAGTTTCATCGCAAGAC
AACTCGTTTTCTATTTTTCATAATTTTCAAAACTTTTTAAGGTTCAGGATTTTTTAAAATTTCTT
CGGAAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AAATTTCGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGAGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCACACACCCCCCTCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTC
CGACGATGCC
Found at i:16294876 original size:26 final size:26
Alignment explanation
Indices: 16294837--16294889 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16294827 CTGGCCCGAT
16294837 CTTAGACTAAGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
** *
16294863 CTTAGACTGGGAATGGACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
16294889 C
1 C
16294890 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCGTATG
Found at i:16297294 original size:863 final size:865
Alignment explanation
Indices: 16295478--16297644 Score: 2882
Period size: 864 Copynumber: 2.5 Consensus size: 865
16295468 GCAGCAAACC
* *
16295478 TGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
1 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATC
* * * * *
16295543 ACACATCATGTCCGCACACCCCCTCTGGCCCCCCCGATCGCCGGAA-CCCAATGCCGCCAGTCAG
66 GCACATCATGTGCGCACACCCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAG
* * * **
16295607 GTTCTC--CG--G---C-G-ATGGT-CCCAGGCGAAGAAAAATACGGTGCCAACACATGCCTGAG
130 GTTCTCTGTGATGCTCCGGCATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCC-GAG
* * * *
16295662 CCCAGCATGTGCTGTCGCAACCCTCGGT-CTGGTCCGATCTTAGACTGGGAATGTACTTCGTATG
194 CCCAGCATGTGCTGTCGTAACCCTCGGTCCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
** * * *
16295726 CCTAAGTCAACCCACGAAATTAGCGTGCGGGTGCTCAGCTGGCCAGAGGGGC-GGATGCGCAAGC
259 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGTGCAAGC
* ** * * * * * *
16295790 TGGGGATCGATCGGGTCCCCCTCTGTGTGCTGTCAATCCTGCTGTCGCAACCCTCGATCCGATTT
324 TGGGGATCGATCGGGTCCCCATCTACGTGCTGTCGATCCTGCTGCCGCAA-CCTTGGTCCGGTCT
* * *
16295855 GATCTTAGACTAGGATTGAACTCCGTATACCTAAGCCAACCGATGAAACGACGGGCGGCTAGGTG
388 GATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGA-----GGC---G-G
* * * * * *
16295920 GGCTGGCATTACGTCAGCCAGAGAGACGTGATGCGCAAGCCGTGAATCGATAGGGTGGTCGGTGG
444 GGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCATGAATCGATAGGGTGGTAGGTGG
* *
16295985 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAC
509 GTTTAGGCAAATCTTCATATTTCTGCATACCAATGCCATTTTTATGGCTTGTAAATTCATACAAC
* *
16296050 GGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTT
574 GGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * *
16296115 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCAGCAACCTTGG
639 TGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCACCAAACTTGG
* *
16296180 AAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTAC
704 AAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCCAAAAACTCGAAGTGTAC
16296245 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAA
769 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAA
*
16296310 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
834 ACCTGTAAAATCTCAAACGCTCTTTAAGGGGG
16296342 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATC
1 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATC
* * *
16296407 GCACATCATGTGCGCACA-CCCCCCGGCCCCCCCAATCGTCGGAACCCCAACGCTGCCGGTCAGG
66 GCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
* * * *
16296471 TTCTCTGATGATGCTCCGGCATTGGTGCCCCGACGAAGAATAATGCGACACCAGCACATGACCGA
131 TTCTCTG-TGATGCTCCGGCA-TGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATG-CCGA
* * *
16296536 GCCCAGCATGTGCTGCCGTAACCCTCGGTCCT-ATCCGATCTTAGACTTGTAATGAACTCCGTAT
193 GCCCAGCATGTGCTGTCGTAACCCTCGGTCCTGATCCGATCTTAGACTGGGAATGAACTCCGTAT
*
16296600 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGTGCAAG
258 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGTGCAAG
* ** *
16296665 CTGGGGATCGGTCGGGTCCCCATCTACGTGCTGTCGATCCTGCTGCCATAACCATTGGTCCGGGC
323 CTGGGGATCGATCGGGTCCCCATCTACGTGCTGTCGATCCTGCTGCCGCAACC-TTGGTCCGGTC
* * *
16296730 TGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGA-GC-GGGCGGGCA
387 TGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGGCGGGGCGGGCA
* * *
16296793 CTACGCCGGCCAGAGAGACGGGATGCTCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
452 CTACGCCAGCCAGAGAGACGGGATGCGCAAGCCATGAATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
16296858 AAATCTTCATATTTTTGC-TACCAATGCCATTTTTATGGCTTGTAAATTGATACAATGGTCCCTT
517 AAATCTTCATATTTCTGCATACCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTT
* * *
16296922 AAGCCTTCGCGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTTAAACTT
582 AAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * *
16296987 TTTGCGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
647 TTTACGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCACCAAACTTGGAAGACGTG
*
16297052 ATCCCTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTT
712 ATCCCTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCCAAAAACTCGAAGTGTACAAGATTTT
*
16297116 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
777 GTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAA
16297181 AATCTCAAACGCTCTTTAAGGGGG
842 AATCTCAAACGCTCTTTAAGGGGG
* *
16297205 TGTGAGTTCTCGAGGTTTAATGAGGGATA-GGGGCCAAGATAAGGGCCAAGTACCAGCACCCATC
1 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATC
** **
16297269 GCACATCATGTGCGCACACCCCCCCGATCCCCCCGATCGTCAAAACCCCAATGCCGCCGGGTCAG
66 GCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCC-GGTCAG
*
16297334 GTTCTCTGGTGATGCTCCGGCGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAACACATGCCCG
130 GTTCTCT-GTGATGCTCCGGC-ATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATG-CCG
*
16297399 AGCCCAGCAAGTGCTGTCGTAACTCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
192 AGCCCAGCATGTGCTGTCGTAAC-C-C--TC--G---G-TC-----C------TG-A-TCCG-AT
* *
16297464 GCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTGGGGGTGCTCAG
233 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG
** * *
16297529 CC-AGCCAGAGGGGCGGGATGTGCAAGCCAGGGATCGATAGGGTCCCCTTCTACGTGCTGTCGAT
297 CCGA-CCAGAGGGGCGGGATGTGCAAGCTGGGGATCGATCGGGTCCCCATCTACGTGCTGTCGAT
* *
16297593 CCTGCTACCGCAACCTTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCC
361 CCTGCTGCCGCAACCTT-GGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
16297645 ATATGCTTAG
Statistics
Matches: 1139, Mismatches: 115, Indels: 72
0.86 0.09 0.05
Matches are distributed among these distances:
862 71 0.06
863 220 0.19
864 335 0.29
865 84 0.07
866 2 0.00
868 3 0.00
870 3 0.00
871 1 0.00
872 1 0.00
873 2 0.00
874 6 0.01
875 131 0.12
876 109 0.10
879 1 0.00
885 1 0.00
887 1 0.00
888 4 0.00
889 5 0.00
890 159 0.14
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (865 bp):
TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATC
GCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
TTCTCTGTGATGCTCCGGCATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCGAGCC
CAGCATGTGCTGTCGTAACCCTCGGTCCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCC
TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGTGCAAGCTG
GGGATCGATCGGGTCCCCATCTACGTGCTGTCGATCCTGCTGCCGCAACCTTGGTCCGGTCTGAT
CTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGGCGGGGCGGGCACTAC
GCCAGCCAGAGAGACGGGATGCGCAAGCCATGAATCGATAGGGTGGTAGGTGGGTTTAGGCAAAT
CTTCATATTTCTGCATACCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGC
CTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
CGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCACCAAACTTGGAAGACGTGATCC
CTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGA
CCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
TCAAACGCTCTTTAAGGGGG
Found at i:16297468 original size:26 final size:26
Alignment explanation
Indices: 16297439--16297491 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16297429 CTGGTCCGAT
16297439 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16297465 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16297491 C
1 C
16297492 CAAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16297749 original size:185 final size:182
Alignment explanation
Indices: 16297418--16297832 Score: 562
Period size: 185 Copynumber: 2.3 Consensus size: 182
16297408 AGTGCTGTCG
* ** * *
16297418 TAACTCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
1 TAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAAC
* * ** *
16297483 TCCGTATGCCAAAGTCAACCCACGAAACGAGCGTGGGGGTGCTCAGCCAGCCAGAGGGGCGGGAT
66 TCCGTACGCCAAAGTCAACCCACGAAACAAGCGTACGGGTGCTCAGCCAGCCAGAGGGGCGAGAT
*
16297548 GTGCAAGCCAGGGATCGATAGGGTCCCCTTCTACGTGCTGTCGATCCTGCTACCGC
131 GCGCAAGCCAGGGATCGATAGGGTCCCC-TCTACGTGCTGTCGAT-C--CTACCGC
* * *
16297604 -AACCTTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAAC
1 TAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAAC
* * * * *
16297668 TCCGTACGTCTAAGTCAACCCATGAAACAAGCGTACGGGTGCTCAGCCGGCCAGAGGGGTGAGAT
66 TCCGTACGCCAAAGTCAACCCACGAAACAAGCGTACGGGTGCTCAGCCAGCCAGAGGGGCGAGAT
* * * * *
16297733 GCGCAAGTCGGGGATCGGTCGGGTCCCCTCTACGTGCTGTCGATCCTACTGC
131 GCGCAAGCCAGGGATCGATAGGGTCCCCTCTACGTGCTGTCGATCCTACCGC
*
16297785 TAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 TAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
16297833 CTAAGCCAAC
Statistics
Matches: 200, Mismatches: 28, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
181 6 0.03
182 43 0.22
183 1 0.00
184 16 0.08
185 134 0.67
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (182 bp):
TAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAAC
TCCGTACGCCAAAGTCAACCCACGAAACAAGCGTACGGGTGCTCAGCCAGCCAGAGGGGCGAGAT
GCGCAAGCCAGGGATCGATAGGGTCCCCTCTACGTGCTGTCGATCCTACCGC
Found at i:16300791 original size:26 final size:26
Alignment explanation
Indices: 16300755--16300807 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16300745 CCGGTCCGAT
*
16300755 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16300781 CTTAGATTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16300807 C
1 C
16300808 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16303032 original size:26 final size:26
Alignment explanation
Indices: 16302995--16303047 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16302985 GTTGACTTAG
16302995 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
*
16303021 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
16303047 G
1 G
16303048 AATCAGACCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:16303945 original size:26 final size:26
Alignment explanation
Indices: 16303893--16303945 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16303883 ATTGACTTAG
* *
16303893 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATATAA
16303919 GCATACGGAGTTCATTCCCAATATAA
1 GCATACGGAGTTCATTCCCAATATAA
16303945 G
1 G
16303946 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATATAA
Found at i:16304833 original size:26 final size:26
Alignment explanation
Indices: 16304797--16304849 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16304787 GTTGACTTAG
*
16304797 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16304823 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16304849 G
1 G
16304850 ATCGAACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16305169 original size:904 final size:899
Alignment explanation
Indices: 16302462--16306443 Score: 5443
Period size: 904 Copynumber: 4.5 Consensus size: 899
16302452 NNNNNNNNNN
*
16302462 GGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
1 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
** *
16302527 AAGGATCTTGTCTACCAAGCTTT-GCGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAA
66 AAGGATCACGTCTACCAAG-TTTGGCGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAA
* *
16302591 CCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT-CCACGAAACTTCATGTG
130 CCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
*
16302655 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATG
195 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* * *
16302720 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACATGCGCATCCCGTCTCTCTGGCT
260 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * *
16302785 GGCGTAGTGCCCACCCACCCGCCCGCCCGCTCGTTTGGTCGGTTGGCTTAGGCATACGGAGTTCA
325 GGCGTAGTGCCCGCCCGCCCG-CCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* ** * * * * * *
16302850 TTCCCAGTCTAAGATCAGA-TCAGACCAAGGATTGCGGTAGAAGGATCGGCAGCACACAGAGGAG
388 TTCCCAGTCTAAGATCAGACTGA-ACTGAGGGTTACGGCAGTAGGATCGGCAGCACGCAGAGGGG
* * * *
16302914 G-CCTCGGTCGATCCCCATCTTGCACATCCCGCCCCTCTGGTCGGCTGAG-AGCCCGCACACTCG
452 GACC-CGGCCGATCCCCATCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA-CCCGCACGCTCG
**
16302977 TTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAG
515 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAG
* * * *
16303042 TCTAAGAATC-AGACCGGTCTGAGGGTTGCGGTAGCACATGCTGGGCTTAGGCATGTGCTGGTGC
580 TCTAAG-ATCGA-ACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGC
* * * *
16303106 CACATTTTTCTTTGC-CGGGGCACCAT-GTCGGAGCATCGCCAGAGAACCTGACAGGCGGCATTG
643 CACATTTTTC-TTCCTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* * * * *
16303169 TGTTTCCGACGATCGGAGGGCCGGGGGGTATGCGCACATGATGTGCAATGGGTGCTGGTACTTGG
707 GGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
16303234 CCCTTATATTGGCCCCCTATCACTCATCAAACCTCAAGAACTCACTCCCCTTTAAAGAGCATTTG
772 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC-TTAAAGAGCATTTG
* *
16303299 AGATTTTACAGGTTTGCGGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAAT
836 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
16303363 GGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTTTTTTGCATGCCAACAAAAATAC
1 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * *
16303428 AAGGATCACGTGTAGCAAGTTTGGCGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAT
66 AAGGATCACGTCTACCAAGTTTGGCGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
* * * *
16303493 CGTAAAAAGTTTTAAAAATCGTGAAAAATATAAAATGAGTTGTCTTGCCATGAAACTTCGCGTGA
131 CGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* **
16303558 AAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
196 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* * * * *
16303623 TGACGTACCTAAACCCACCTACCA-CCTATAGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCG
261 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * * *
16303687 ACGAATTGCCTGCCTGCCCG-C-CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
326 GCGTAGTGCCCGCCCGCCCGCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* *
16303750 CCAGTCTAAGCATACAGACCGGA-TCGA-GGTTACGGCAGTAGGATCGGCAGCACGCAGAGGGGG
391 CCAGTCTAAG-AT-CAGACTGAACT-GAGGGTTACGGCAGTAGGATCGGCAGCACGCAGAGGGGG
* * * ** * *
16303813 CCCCTGTCGATCCCCATCTTATGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
453 ACCCGGCCGATCCCCATCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTT
* ** * * *
16303878 CATGTATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATAT
518 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCT
* * * * * * * **
16303943 AAGATCGGACCAAACTGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATATGCTGGTGCCGTAT
583 AAGATCGAACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACAT
* * * * *
16304008 TTTTCTTCCTCGGGGCACCACCGCCAGAGCATCGTCGGAGAACCTGGCCGCCGGCATTGGGGTTC
648 TTTTCTTCCTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTC
* * * * * **
16304073 TGGCGATCGGGGGGCCGGGGGGGGTGTGCACACATAATGTACGATGGGTGCTGGTACTTCACCCT
713 CGACGATCGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
*
16304138 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGAT
776 TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC-CTTAAAGAGCATTTGAGAT
16304203 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
840 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * *
16304263 GGTCACACAATCTTGTACACTTCGAGTTTTAAGCTAAATTTTTTTGTGCATGCCAACAAAAAGAC
1 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * *
16304328 AAGGATCACGTATACCATGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAAC
66 AAGGATCACGTCTACCAAGTTTGGCGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
* * *
16304393 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
131 CGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
*
16304458 AGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAAATGGCATTGGCATGCAG-AATATG
196 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCATGCAGAAATATG
16304522 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
260 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* *
16304587 GGCGTAGTGCCCGCCCGCCCGCCTGCTTGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCA
325 GGCGTAGTGCCCGCCCGCCCGCC-GC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * ** *
16304652 TTCCCAGTTTAAGATCAGACTGAACTGAGGGTTATGATAGCAGGATCGGCAGCACGCAGAGGGGG
388 TTCCCAGTCTAAGATCAGACTGAACTGAGGGTTACGGCAGTAGGATCGGCAGCACGCAGAGGGGG
*
16304717 ACCCGGCCGATCCCCGA-CTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCACCCGCACGCTCGTT
453 ACCCGGCCGATCCCC-ATCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTT
16304781 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTC
517 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTC
* * * * *
16304846 TAAGATCGAACTAGACCGAGGGTTGCGGTAGTACATGCTGGGCTCAGGCTTGTGTTGGTGCCGCA
582 TAAGATCGAACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACA
* *
16304911 TTTTTCTTCACT-GGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTAGGGT
647 TTTTTCTTC-CTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGT
*
16304975 TCCGACGATCGGGGGGGCCGATGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGC
711 TCCGACGATC-GGGGGGCCG--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
** * *
16305040 CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAATTCACACCCCGTCAAAGAGCATTTGA
773 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC-TTAAAGAGCATTTGA
*
16305105 GATTTTACAGGTTTGCTGCAAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAAT
837 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
*
16305167 GGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
1 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * * *
16305232 ATGGATCACATCTACCAAGTTTGGTGCCAAAATTCCTTCCAAAAAAAGTTTAAAAAATCCCGAAC
66 AAGGATCACGTCTACCAAGTTTGGCGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
* * *
16305297 CGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
131 CGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * *
16305362 AGGCTTAAGGGACCACTATATGAATTTTACAAGCCATAAAAATGGCATTGTCATGAAGAAATATG
196 AGGCTTAAGGGACCATTGTATGAA-TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* * * *
16305427 AAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTACGTATCCCGTCTTTCTGGCC
260 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * *
16305492 GACGTAGT----GCCTGCCCG-C-CCTCTCGTTTCGTTGGTTGGCTTAGGCATACAGAGTTCATT
325 GGCGTAGTGCCCGCCCGCCCGCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * * *
16305551 CCCAATCTAAGATCGGATTGGACTGAGGGTTGCGGCAGTAGGATCGACAGCACGCAAAGGTGGAC
390 CCCAGTCTAAGATCAGACTGAACTGAGGGTTACGGCAGTAGGATCGGCAGCACGCAGAGGGGGAC
* * ** * *
16305616 CCGACCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCG
455 CCGGCCGATCCCCATCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCG
*
16305681 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT--TG-G---------A--CT--
520 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
* * * * *
16305729 G---G-ACC--A---AGGGTTGCGATAGTACATGTTGGGCTCGGGCATGTGTTGGTGCCACATTT
585 GATCGAACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTT
* * * *
16305785 TTCTTCGTCGGGGCACCATCGTCGAAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCG
650 TTCTTCCTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
* *
16305850 GCGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
715 ACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
16305915 ATTGGCCCCCTATCCCTCATCAAACGTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
779 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTT
* * *
16305980 ATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCATAT
843 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
16306037 GGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATAC
1 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * *
16306102 AAGGATCACGTTTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAAC
66 AAGGATCACGTCTACCAAGTTTGGCGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
* * * *
16306167 CTTAAAAAGTTTTGAAAATCGTGAAAAATAGTAAACGAGTCGTCTTGCCATGAAACTTCATGTGA
131 CGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * *
16306232 AGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGGACGCAGAAATATGA
196 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
*
16306297 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTG
261 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * *
16306362 GCGTAGTTCCCGCCCACCCGCCCGCACACTCGTTTCGTCGGTTGGCTTATGCATACGGAGTTTAT
326 GCGTAGTGCCCGCCCGCCCG-CCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* *
16306427 TCCCAATCTAAAATCAG
389 TCCCAGTCTAAGATCAG
16306444 GCCAGATCGA
Statistics
Matches: 2738, Mismatches: 301, Indels: 108
0.87 0.10 0.03
Matches are distributed among these distances:
869 248 0.09
870 212 0.08
871 117 0.04
873 7 0.00
874 1 0.00
875 1 0.00
876 3 0.00
877 50 0.02
880 1 0.00
882 2 0.00
884 1 0.00
893 1 0.00
894 1 0.00
896 5 0.00
897 302 0.11
898 193 0.07
899 9 0.00
900 399 0.15
901 288 0.11
902 98 0.04
903 10 0.00
904 497 0.18
905 292 0.11
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (899 bp):
GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
AAGGATCACGTCTACCAAGTTTGGCGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
CGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
GCGTAGTGCCCGCCCGCCCGCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACTGAACTGAGGGTTACGGCAGTAGGATCGGCAGCACGCAGAGGGGGACC
CGGCCGATCCCCATCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAG
ATCGAACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTT
TCTTCCTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA
CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
Found at i:16308768 original size:26 final size:26
Alignment explanation
Indices: 16308729--16308781 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16308719 GTTAACTTAG
*
16308729 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAATCTAA
*
16308755 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAATTCATTCCCAATCTAA
16308781 G
1 G
16308782 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAATCTAA
Found at i:16309663 original size:26 final size:26
Alignment explanation
Indices: 16309633--16309683 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
16309623 TGACTTAGGC
16309633 ATACGGAGTTCATTCCCAGTCTAAGT
1 ATACGGAGTTCATTCCCAGTCTAAGT
16309659 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
16309684 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:16310111 original size:903 final size:895
Alignment explanation
Indices: 16307922--16310256 Score: 3334
Period size: 903 Copynumber: 2.6 Consensus size: 895
16307912 CTGGGCTAGG
* * * *
16307922 GCATGTGTTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCTCCGGATCATCACTGGAGAACCTG
1 GCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCTC-GGAGAACCTG
* * **
16307987 ATCAACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGCGGTGTGTACACATGATGTGCGATGG
65 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGCGGTGTGCGCACATGATGTGCGATGG
16308052 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCAAGAACTCACACCCCC
130 GTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCACCAAACCTCAAGAACTCACACCCCC
* *
16308117 TTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAATGGGGAC
194 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
16308182 ACTTTATTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTTTGCATG
259 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
16308247 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCCAAAAAAATTTT
324 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACATCCTT-CAAAAAAATTTT
**
16308311 AAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
388 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * * *
16308376 CAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGTATTGGC
453 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * ** *
16308441 AGGGAGAAATATGCGGATGTGCCTAAACCCACCTACCACCCCATCGATCCACAACTTGCGCATCC
518 ACGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCCATCGATCCACAACTTGCGCATCC
* *
16308506 CATCTTTCTGGCCGATATAGTGCCCGCCCGCCCGCCCGCCCACTAATTTCATCGATTGGCTTAGG
583 CATCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCCCACTAATTTCATCGATTGGCTTAGG
* * * *
16308571 CATACGGAGTTCATTCCCAGCCTAAGATCAGATCGGATCGAGGGTTGTGGCAGTAGGATCGATAG
648 CATACGGAGTTCATTCCCAGCCTAAGATCAGACCAGATCGAGGGTTGTGGCAGCAGGATCGACAG
* ** * * * **
16308636 TAGACAGAGGGGGACCCGATTGATCCCCGACTTGCGCATCTCGCCCCTCTGGCCGGTTGAGCACC
713 CAGACAGAGGGGGACCCGACCGATCCCCGACTTACCCATCTCGCCCCTCTGCCCGACTGAGCACC
16308701 CGCACGATCGTTCCATGGGTTAACTTAGGCATACGGAATTCATTCCCAGTCTAAGCATACGGAGT
778 CGCACGATCGTTCCATGGGTTAACTTAGGCATACGGAATTCATTCCCAGTCTAAGCATACGGAGT
* ** * * *
16308766 TCATTCCCAATCTAAGATCGGACCGAATTGAGGGTTACGACAGCACATGCTGTTCTCGG
843 TCATTCCCAATCTAAGATCGGACCAAACCGAGGGTTACAACAGCACA------TATCGA
* * * *
16308825 GCATGTGTTGGTGCCGCATTTTTCTTCTTCGGGGTACCATCGTCGGAGCATCATCGGAGAACCTG
1 GCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-TCGGAGAACCTG
* * * *
16308890 ACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGTGGTGTGCGCACATGATGTGCAATG
65 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGCGGTGTGCGCACATGATGTGCGATG
* * * *
16308955 GGTGCTTGTACTTGGCCCCTATATTAGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCC
129 GGTGCTGGTACTTGGCCCTTATATT-GGCCCCTATCCCTCACCAAACCTCAAGAACTCACACCCC
* * *
16309019 CTTGAAAGAGCATTTCAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGG
193 CTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
16309084 ACACTTTTGTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGC-GAAATTTTTTTGTGC
257 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTTGTGC
16309147 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCTAAAAAAAT
321 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACATCCTTC-AAAAAAAT
* * *
16309211 TTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGC
385 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
16309276 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCGTAAAAATGGCATT
450 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* **
16309341 GGCATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCCATCGATCCACGGCTTGCGCA
515 GGCACGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCCATCGATCCACAACTTGCGCA
* * * * ** * ** ** * * *
16309406 TCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTTCGCCCGTCTGCTCGTTTCGTCGGTTGGTTT
580 TCCCATCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCCCACTAATTTCATCGATTGGCTT
* *
16309471 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CTGAGGGTT-TCGGTAGCAGGATC
645 AGGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCAGATC-GAGGGTTGT-GGCAGCAGGATC
* **
16309534 -AGCAGCACG-CAGA-GGGGACTCGACCGATCCCCGGTTTACCCATCTCGCCCCTCTGCCCGACT
708 GA-CAGCA-GACAGAGGGGGACCCGACCGATCCCCGACTTACCCATCTCGCCCCTCTGCCCGACT
* * * * * * *
16309596 GAGTACCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTAT
771 GAGCACCCGCACGATCGTTCCATGGGTTAACTTAGGCATACGGAATTCATTCCCAGTCTAAGCAT
* *
16309661 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTACAACGGCA-A-ATCGA
836 ACGGAGTTCATTCCCAATCTAAGATCGGACCAAACCGAGGGTTACAACAGCACATATCGA
* * * *
16309719 GCATGTCTTGGGGCTGCATTTTTCTTCGTCGGGGCACCATCGGCAGAGCATCGTCGGAGAACCTG
1 GCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-TCGGAGAACCTG
*
16309784 ACCGAC-GCAATTGGGGTTCCGACGATCGGGGGGGGCGGG-GGTGTGCGCACAATGATGTGCGAT
65 ACCGACGGC-ATTGGGGTTCCGACGATCGGGGGGGCCGGGCGGTGTGCGCAC-ATGATGTGCGAT
16309847 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCTAT-CCTCACCAAACCTCAAGAACTCACACCCC
128 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCACCAAACCTCAAGAACTCACACCCC
*
16309911 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AGAATAGGG
193 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATGGGG
**
16309975 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATAGTTTTGTGCA
257 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * ** *
16310040 TGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACATTTTTCGAAAAAATTT
322 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACATCCTTCAAAAAAATTT
* *
16310105 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCA
387 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
16310170 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
452 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
**
16310235 CACATAGAAATATGAAGATGTG
517 CACGCAGAAATATGAAGATGTG
16310257 GCTTGCGCAT
Statistics
Matches: 1281, Mismatches: 133, Indels: 47
0.88 0.09 0.03
Matches are distributed among these distances:
890 1 0.00
891 119 0.09
892 241 0.19
893 45 0.04
894 90 0.07
901 1 0.00
902 148 0.12
903 460 0.36
904 175 0.14
905 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (895 bp):
GCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCTCGGAGAACCTGA
CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGCGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCACCAAACCTCAAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACATCCTTCAAAAAAATTTTAAA
AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
CAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCCATCGATCCACAACTTGCGCATCCCAT
CTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCCCACTAATTTCATCGATTGGCTTAGGCAT
ACGGAGTTCATTCCCAGCCTAAGATCAGACCAGATCGAGGGTTGTGGCAGCAGGATCGACAGCAG
ACAGAGGGGGACCCGACCGATCCCCGACTTACCCATCTCGCCCCTCTGCCCGACTGAGCACCCGC
ACGATCGTTCCATGGGTTAACTTAGGCATACGGAATTCATTCCCAGTCTAAGCATACGGAGTTCA
TTCCCAATCTAAGATCGGACCAAACCGAGGGTTACAACAGCACATATCGA
Found at i:16310359 original size:26 final size:26
Alignment explanation
Indices: 16310329--16310381 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16310319 GTTGGCTTAG
*
16310329 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16310355 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16310381 G
1 G
16310382 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16310946 original size:709 final size:698
Alignment explanation
Indices: 16309600--16310965 Score: 2123
Period size: 709 Copynumber: 1.9 Consensus size: 698
16309590 CCGACTGAGT
* * *
16309600 ACCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTATACGG
1 ACCCGCACGCTCGTTTCATCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
*
16309665 AGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTACAACGGCAAATCGAGCATGTCTTGG
66 AGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTAACAACGGCAAATCGAGCATGTCTTGG
* ** *
16309730 GGCTGCATTTTTCTTCGTCGGGGCACCATCGGCAGAGCATCGTCGGAGAACCTGACCGACGCAAT
131 GGCCGCATTTTTCTTCGTCGGGGCACCATCGGCAGAGCATCACCGGAGAACCTGACAGACGCAAT
* * *
16309795 TGGGGTTCCGACGATCGGGGGGGGCGGGGGTGTGCGCACAATGATGTGCGATGGGTGCTGGTACT
196 TGGGGTTCCGACGATCGGGGGCGGCGGGGGTGTGCGCACAATGATGTACAATGGGTGCTGGTACT
*
16309860 TGGCCCTTATATTGGCCCCTATCCTCACCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
261 TGGCCCTTATATTGGCCCCTATCCTCACCAAACCTCAAGAACTCACACACCCTTAAAGAGCATTT
16309925 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAGAATAGGGACACTTTTTTCAAAT
326 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAGAATAGGGACACTTTTTTCAAAT
16309990 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATAGTTTTGTGCATGCCAACAAAAATAC
391 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATAGTTTTGTGCATGCCAACAAAAATAC
* * *
16310055 AAGGATCATGTCTACCAAGTTTGGGGCCAAAACATTTTTCGAAAAAATTTTAAAAAATCCCGAAC
456 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACATCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* *
16310120 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGA
521 CATAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGA
*
16310185 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGA
586 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
16310250 AGATGTGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCC
651 AGATGTGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCC
* * *
16310298 ACCCGCATGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGG
1 ACCCGCACGCTCGTTTCATCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * *** *
16310363 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGATTGTAACAGCACATGCTGGGCTCGGGCA
66 AGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGG---GTAACA--AC-GGC--AAATCGAGCA
* * * ***
16310428 TGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTTGGAGCATCACCGGAGAACCTGACA
123 TGTCTTGGGGCCGCATTTTTCTTCGTCGGGGCACCATCGGCAGAGCATCACCGGAGAACCTGACA
*
16310493 GGCGGC-ATTGGGGTTCCGACGATCCAGGGGGCCGG-GGGGGTGTGCGCAC-ATGATGTACAATG
188 GAC-GCAATTGGGGTTCCGACGAT-C-GGGGG-CGGCGGGGGTGTGCGCACAATGATGTACAATG
* * *
16310555 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATACACC
249 GGTGCTGGTACTTGGCCCTTATATTGG-CCCCTAT-CCTCACCAAACCTCAAGAACTCACACACC
* *
16310620 CTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATTGGG
312 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAG-AATAGGG
* * *
16310684 ACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGTGCA
376 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATAGTTTTGTGCA
*
16310749 TGCCAACAAAAATACAAGGATGACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCCGAAAAAATT
441 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACAT-CTTCCGAAAAAATT
* *
16310813 TTAAAAAATTCTCGAACCATAAAAAGTTTCGAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGC
505 TTAAAAAA-TCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGC
*
16310878 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAA-CCATAAAAATGGCATT
569 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
16310942 GGCACACAGAAATATGAAGATGTG
634 GGCACACAGAAATATGAAGATGTG
16310966 CCTAAACCCA
Statistics
Matches: 605, Mismatches: 46, Indels: 23
0.90 0.07 0.03
Matches are distributed among these distances:
698 94 0.16
701 5 0.01
703 2 0.00
704 2 0.00
706 80 0.13
707 41 0.07
708 28 0.05
709 254 0.42
710 99 0.16
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (698 bp):
ACCCGCACGCTCGTTTCATCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
AGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTAACAACGGCAAATCGAGCATGTCTTGG
GGCCGCATTTTTCTTCGTCGGGGCACCATCGGCAGAGCATCACCGGAGAACCTGACAGACGCAAT
TGGGGTTCCGACGATCGGGGGCGGCGGGGGTGTGCGCACAATGATGTACAATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCTATCCTCACCAAACCTCAAGAACTCACACACCCTTAAAGAGCATTT
GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAGAATAGGGACACTTTTTTCAAAT
GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATAGTTTTGTGCATGCCAACAAAAATAC
AAGGATCACGTCTACCAAGTTTGGGGCCAAAACATCTTCCGAAAAAATTTTAAAAAATCCCGAAC
CATAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGA
AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
AGATGTGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCC
Found at i:16311051 original size:12 final size:12
Alignment explanation
Indices: 16311034--16311059 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
16311024 GCGTAGTGCC
16311034 CGCCCGCCCGCT
1 CGCCCGCCCGCT
16311046 CGCCCGCCCGCT
1 CGCCCGCCCGCT
16311058 CG
1 CG
16311060 TTTCGGCGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.65, G:0.27, T:0.08
Consensus pattern (12 bp):
CGCCCGCCCGCT
Found at i:16314666 original size:25 final size:26
Alignment explanation
Indices: 16314615--16314666 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16314605 GTTGACTTAG
16314615 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
16314641 GCATATGGAGTTCA-TCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16314666 G
1 G
16314667 ATCGGACAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16315820 original size:901 final size:897
Alignment explanation
Indices: 16311932--16318942 Score: 6837
Period size: 902 Copynumber: 7.9 Consensus size: 897
16311922 CCTGCCTGCC
* * * * *
16311932 CGCTCGTTTCGTGGGTTGACTTAGGCATGCGAAGTTTATTCCTAGTCTAAGCATACGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
* * * ** * *
16311997 TCTCAGTCCAAGATCAGACCGGACCGAGGGTTGCGGCAACACATGCTGGGCTCGGGCATGTGTTG
66 TCCCAGTCTAAGATCGGACTAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
* * *
16312062 GTGCCGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGTCGGAAAACCTGACTGACGGCA
131 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCA
* * * *
16312127 TTGGCGTTCTGGCGATC-----AG-C-GGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTAC
196 TTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
16312185 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
261 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
16312250 TTTGAGATTTTACAAGATTGCTGCCCA-TAGCCATTAAAGTGTCTAGAATGGGGACACTTTTTTC
326 TTTGAGATTTTACAGGTTTGCTG-CCAGTAGCCATTAAAGTGTCTAGAATGGGGACACTTTTTTC
* * * * *
16312314 AAATGGTCACAAAATCATGTACACTTTGAGTTTTTAGCTGAATGATTTTGTGAATGCAAAAAAAA
390 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAA
* * *
16312379 ATACAAGGATCACATCTACCAAGTTTGGGGCAAAAACTCCATT-CGAAAAAATTTTGAAAAATCT
455 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAAAATTTTAAAAAATCT
* ** *
16312443 CGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
519 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
16312508 CGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAA
584 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * *
16312573 TATGAAGATGTGCCTAAACCCACCTACCACCCTTATCGATACACGGCTTCCGCATCCCGTCTCTC
649 TATGAAGATGTGCCCAAACCCACCTACCACCC-TATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * *
16312638 TGGCCGGCGTAGTG----CCCGCCCG--CTCGTTTCTTCGGTTGGCTTAGGCATACGGAGTTCAT
713 TGGCCGACGTAGTGCCCACCCGCCCGCACTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCAT
* * * ** * *
16312697 TCCCAGTGTCAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGC
778 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACACAGAGGGGGA
*
16312762 CCCGATCGATCCCCGGCTTGCGCATCACGCCCCTCTGGCCGGCTGAGCACCCGCA
843 CCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCA
* *
16312817 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTC-AAGCATACGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
* * * * * ** *
16312881 TCCCCGTCTAAGACCAGA-TCAGACCAAGGGTTGCAACAACACATGCTGGGCTCGGGCATGTGTT
66 TCCCAGTCTAAGATCGGACT-AGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTT
* * **
16312945 GGTGTCGCATTTTTCTTCGTCGAGGCACCATCGTGGGAGCATCGTCGGAGAACCTGACCGACGGC
130 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGC
* *
16313010 ATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTA
195 ATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
16313075 CTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
260 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
16313140 GTTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTT
325 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAG-AATGGGGACACTTTTTT
* * * * * *
16313204 CAAATGGTCATAAAATCTTGTACACTTTGAGTTTTTGGCTAAATTTTTTTTGTGCATGCCAACAA
389 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TGTTTTTGTGCATGCCAAAAA
* *
16313269 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTTCGAAAAAATTTTAAAAAATC
453 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
16313334 TCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
518 TCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* ***
16313399 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAGGTGTCATTGGTGCGCAG
583 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA--TGGCATTGGCATGCAG
* * * * * * * *
16313464 AAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCATGACTTGTGGATCCTGCCTC
646 AAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
*
16313529 TCTGGCCGACGTAGTGCCCACCCGCCCGCA--CGTTTCGTCGGA-TGGCTTAGGCATATGGAGTT
711 TCTGGCCGACGTAGTGCCCACCCGCCCGCACTCGTTTCGTC-GATTGGCTTAGGCATACGGAGTT
* * * ** ** * * * *
16313591 CATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTGTGATAGTAGGATCGGCAACACGCAGAGGG
775 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACACAGAGGG
** * * * * * * * *
16313656 GGACTTGACCGATCTCCGGCATGCGAATCCTGCCCCTCTGGCTGGATGAGCACCCGTA
840 GGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCA
*
16313714 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC--TGT---C-TA---AG---A-
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
* *
16313766 T--C-G-----GATGGGAC----T-GAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGTTG
66 TCCCAGTCTAAGATCGGACTAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
* * * * *
16313818 GTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGAAGCATCGCCGGAGAACCTGACCGGCGGCT
131 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCA
* * *
16313883 TTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTT
196 TTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
16313948 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
260 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
16314013 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAGAATAGGGACACTTTTTTC
325 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAGAATGGGGACACTTTTTTC
*
16314078 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
390 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAA
** * *
16314143 ATACAAGGATCACGTCTAAAAAGTTTGGGGCCAAAACTCCTTCTGAGAAAATTTTAAAAAATCTC
455 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC
* *
16314208 GAACCAT-AAAATTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
520 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
*
16314272 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGCATGCAGAAAT
585 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * * *
16314337 ATGAAGATGTGCCCAAACCCACTTACCACCCTATCGATCCACGGCTTACGCATCCTGTCTCGCTG
650 ATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * * * *
16314402 GTCGACGTAGTGCTGGCGCGCCCGCCTGTTCGCTCGTTTCGTTGGTTGTCTTAGGCATACGGAGT
715 GCCGACGTAGTGC---C-CACCCGCCCG--CACTCGTTTCGTCGATTGGCTTAGGCATACGGAGT
* * * * * * *
16314467 TTATTCCCAGTCGAAGATCAGGCTGGACCGAGGGTTACGGCAGCAGAATCGATAGCA-AGTAGAG
774 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACA-CAGAG
* * * * **
16314531 GAGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTATGGCAGGCTGAGCGTCCGCA
838 GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCA
*
16314591 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCA-
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
* * * * * *
16314655 TCCCAGTGTAAGATCGGACAAGATCAAGGGTTGTGGCAGCACATGCTAGGCTCGGGCATGTGCTG
66 TCCCAGTCTAAGATCGGACTAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
**
16314720 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG-CTGGAGAACCTGACCGGTGGC
131 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC-GGAGAACCTGACCGACGGC
* *
16314784 TTTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
195 ATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* **
16314849 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCACACCCCCTTAAACTG
259 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
16314914 CATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGT-TAGAAATGGGGACACTTTTT
324 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAG-AATGGGGACACTTTTT
* * *
16314978 TCAAATGCTCACAAATTCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAA
388 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAA
*
16315043 AAATACAAGGATCACGTCTACCAAGTATGGGGTCC-AAACTCCTTCCGAAAAAATTTTAAAAAAT
453 AAATACAAGGATCACGTCTACCAAGTTTGGGG-CCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * * * * *
16315107 CCCAAACCGTAAAAAGTTTCGAAAATCGTAAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
517 CTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
*
16315172 CACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
582 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* * *
16315237 AATATGAAGATGTGCCCAAACCCACCTACAACCCTATCGATCTACGGCTTGCGCATCCCATCTCT
647 AATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
*
16315302 CTGGCCGACATAGTGCCCACCCGCCCGACCGCCCACTCGTTTCGTCGATTGGCTTAGGCATACGG
712 CTGGCCGACGTAGTGCCCACCCG--C--CCG--CACTCGTTTCGTCGATTGGCTTAGGCATACGG
* * *
16315367 AATTCATTCCCAGTCTAAGATC-GCACCGGACCAAGGGTTACGGTAGCAGGATCGACAGCACACA
771 AGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACACA
** * * * * * *
16315431 GA-GGGGACTTGGTCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTAAGCGCCCGTA
835 GAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCA
** * *
16315493 CGCTTATTTTGT-GGTTGAC-TAGGCCTACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
* * * *
16315556 TCCCAGTCTAATATCGGACTAGATCGAGGGTTGCGGTAGCACATGCTGGGCTTGGGCATGTGCTG
66 TCCCAGTCTAAGATCGGACTAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
* * * * * * * *
16315621 GTGCCACATTTTTCTTCGCCAGGGCACCATTGCCAGAGCATCGTCGAAAAACCTGATCGACGGCA
131 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCA
** *
16315686 TTGGGGTTTTGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATTTGCGATGGGTGCTGGTA
196 TTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * * * *
16315751 CTTGACCCTTATATTGGCACCTTATCTCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGC
260 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * * * * * * *
16315816 ATTTGAGATTTAACAGGTTTGCTGCCGGTAGGC--TAGGAGTTTTTAG-CT---GA-ATTTTTTT
325 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA-AAGTGTCTAGAATGGGGACACTTTTTT
*** ** * * *** ** *****
16315874 GTGCAT--TCCACCAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACCACTT-T-CA
389 -CAAATGGT-CA-C-AAAAT-CTTGTA-CAC-T-T--CGAGTTTTTAGCTGAATGTTTTTGTGCA
**** * ** * *
16315935 AAAAAATTTTAAAAAATCCCAA--A-C-CG--TAAAAAGTTT-----CAAAAAT-CGT--G-AAA
444 TGCCAA----AAAAAAT-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
** * * *** * * * * *** * * *
16315985 AA-TAGAATACAGTCGTCTTGCCAT-GAAA-CTTC----A-CGTGAAGGCT---TAA-GGGAC--
504 AATTTTAA-AAAATC-TCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * * * * * *** * ***
16316036 CATTG-TATG-AATTTACAAGCCATAAAAATGGCATT--GGCATGCAGAAATATGAA--GATGTG
567 C-TTGCCATGAAACTT-C-A--CGT--GAA-GGC-TTAAGGGA-CCA-TTGTATGAATTTACAAG
* ** ** * * *** * ** ** ** * *
16316095 CC-TAAACCCACCTACCA--CCCTATCCCGTCTCTTTG--GCCG-GCGTAGTGCCC-GC--CCGC
621 CCATAAA---A-ATGGCATTGGC-ATGCAG-AAATATGAAGATGTGCCCA-AACCCACCTACCAC
** * ** *** ** * * ** ***
16316151 CCGCTCGTTTCGTCGG-TTG-GC-TTAGGCATA-C--G--GA-GTTCA-TTCCCAGTC-TAAG-A
679 CCTATCG-ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG-T-AGTGCCCACCCGCCCGCA
** * * * * * * * * * * *
16316204 -TCGGATCAGACTA-AGGGTTGGGGCAATA-GGA-TTGGCA-GCAC-G-CGGAGGA--GGACCCG
741 CTCGTTTC-GTCGATTGGCTT-AGGC-ATACGGAGTT--CATTCCCAGTC-TAAGATCAGACCGG
** * * * * **** *
16316260 ACCGA---TCCCCGACTTGC-GCATC--CTGC-C-C--TTCTGG--CCGA-CTGAGTGCCC-G--
800 ACCGAGGGT-TACGGC-AGCAGGATCGACAGCACACAGAGGGGGACCCGATC-GA-TCCCCGGCT
* * ** ** * * ** *
16316309 TACGC-T--TG--TTTCATGGGTTGACTTAGGCATACGGA
861 TGCGCATCCCGCCCCTC-T-GGCCGGCTGA-GCACCCGCA
* * *** * * *
16316344 -GTTC-ATTC-CCAG-T--C-TAAGCATACGAAGTTCATTCCCAGTCTAAG---ATCG-G---A-
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
* ** * * * * *
16316394 --CC-G-----G--C---C-----CAAGGGTTGCTACAGCACATGCAGAGCTTGAGCATGTGCTG
66 TCCCAGTCTAAGATCGGACTAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
* * *
16316441 GTGCCGTATTTTTCTTCGTCGGGGCAGCATCGCCGGAGCATCG-CTGGAGAACCTAACCGACGGC
131 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC-GGAGAACCTGACCGACGGC
* *
16316505 ATTGGGGTTCCAGCGATCGGGGGGGCCGGGGCGGTGTGCGCACATGTTGTGCGATGGGTGCTGGT
195 ATTGGGGTTCCGGCGATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
16316570 ACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
259 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
16316635 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCT-GAAATGGGGACACTTTAT
324 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAG-AATGGGGACACTTTTT
* * *
16316699 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTCCATGCCAAAAA
388 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAA
**
16316764 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAACCTTCCGAAAAAATTTTAAAAAATC
453 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* ** ** * *
16316829 CCGAACCGCGAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCGTCTT-CACATGAAACTT
518 TCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC-CATGAAACTT
*
16316893 CATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
582 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* * * *
16316958 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTAGCGCATCCCGTTTCT
647 AATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * *
16317023 CTGCCCGACGTAGTTCCCGCCCTCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAG
712 CTGGCCGACGTAG-T---G----CCCACCCG--C-C-CG--CACTCGTTTCGTCGATTGGCTTAG
* * * ** * * * * * *
16317088 GCATATGAAGTTCATTCCTAGTCTAAGATTGGACTGGACCAAGTGTTGCGGCAGCAGGATCAATA
763 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACA
** * * *
16317153 GCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCGGGCTGAGCGC
828 GCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
16317218 CCGCA
893 CCGCA
* *
16317223 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
* * * * *
16317288 TCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTCGGCTCGGGCATGTGCTG
66 TCCCAGTCTAAGATCGGACTAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
* * * * ** * * *
16317353 GTGCCGCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCGTCACCGGAGAACATGACTGACGACA
131 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCA
* * *
16317418 TTGAGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTA
196 TTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
16317483 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCACGATAACTCACA-CCCCTTAAAGAGC
260 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
**
16317547 ATTTGAGATTTTACAGGTTTGCTGTAAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTT
325 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAG-AATGGGGACACTTTTTT
* * * *
16317611 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCCTGCCAACAAA
389 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAA
* * * ** **
16317676 AATACAAGGATCACATCTACCAAGGATT-GGGCCAAAATTATTTTTGAAAAAATTTTAAAAAATC
454 AATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * * *
16317740 CCGAACCGTAAAAAGTTTCTAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTC
518 TCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
16317805 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAA
583 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* *
16317870 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCATCCCGTCTCTC
648 ATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * * * *
16317935 TGGCCGGCGTAGTGCCCGCCCACCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATGCGAAGTTC
713 TGGCCGACGTAGTGCCCACCCGCCCG--CACTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTC
* * * * * * *
16318000 ATTCCTAGTCTAAGATCGGACCGGATCAAGGGTTGCGGTAGCAGGATCGACAGCATGTGA-AG-G
776 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCA---CACAGAG
* * * * * * * * *
16318063 GGGGACTCGACCGATCCTCAGCTTACGCATCCCGCCCATGTGGCTGGCTGAGCGCCCGCA
838 GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCA
* **
16318123 CGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
* ** * * *
16318188 TCCCAGTCTAAGATCAGACCCGATCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCA-GT-CTG
66 TCCCAGTCTAAGATCGGACTAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
* * * ** * * * *
16318251 GTGCCACATTGTTCTTCATCAAGGCACCATTGCCGGAGCATCGACGG-GAACCTGACCGGCGGTA
131 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCA
* * *
16318315 TTGGGCTTCCAGCGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTAC
196 TTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
16318380 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAAGAGCA
261 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
16318444 TTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTCC
326 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAG-AATGGGGACACTTTTTTC
* *
16318508 AAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATG-CAAAAAA
390 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TGTTTTTGTGCATGCCAAAAAA
* *
16318572 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCT
454 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
* ** * *
16318637 CGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTACCATGAAACTTCA
519 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
16318702 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAA
584 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * * *
16318767 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCAAACCACAGCTTGCGCATCCCGTCTCTCT
649 TATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* *
16318832 GGCCGACGTAGTGCCCGCCCACCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTCGGCATACGGAG
714 GGCCGACGTAGT----GCCCACCCGCCCG--CACTCGTTTCGTCGATTGGCTTAGGCATACGGAG
* * * * *
16318897 TTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTTCGACAGCA
773 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCA
16318943 CATGCTGGGC
Statistics
Matches: 5024, Mismatches: 812, Indels: 565
0.78 0.13 0.09
Matches are distributed among these distances:
815 3 0.00
816 7 0.00
817 1 0.00
818 12 0.00
819 8 0.00
820 235 0.05
821 14 0.00
822 6 0.00
823 3 0.00
824 5 0.00
825 6 0.00
826 14 0.00
827 3 0.00
828 1 0.00
829 4 0.00
830 12 0.00
831 5 0.00
834 6 0.00
835 15 0.00
836 19 0.00
837 14 0.00
838 8 0.00
839 14 0.00
840 5 0.00
841 6 0.00
842 7 0.00
843 7 0.00
845 1 0.00
846 31 0.01
847 2 0.00
848 3 0.00
849 4 0.00
850 8 0.00
851 5 0.00
852 1 0.00
853 4 0.00
854 5 0.00
855 3 0.00
856 4 0.00
857 2 0.00
858 1 0.00
859 2 0.00
860 3 0.00
861 6 0.00
862 14 0.00
863 17 0.00
864 9 0.00
865 11 0.00
866 17 0.00
867 19 0.00
868 6 0.00
869 84 0.02
870 1 0.00
871 102 0.02
872 203 0.04
873 206 0.04
874 5 0.00
875 17 0.00
876 3 0.00
877 166 0.03
878 5 0.00
879 13 0.00
880 16 0.00
881 9 0.00
882 19 0.00
883 13 0.00
884 156 0.03
885 61 0.01
886 45 0.01
887 6 0.00
889 7 0.00
890 12 0.00
891 206 0.04
892 189 0.04
893 39 0.01
894 49 0.01
895 17 0.00
896 457 0.09
897 236 0.05
898 44 0.01
899 98 0.02
900 304 0.06
901 279 0.06
902 462 0.09
903 288 0.06
904 3 0.00
905 6 0.00
906 3 0.00
907 2 0.00
910 1 0.00
911 377 0.08
912 192 0.04
913 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
TCCCAGTCTAAGATCGGACTAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCA
TTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAGAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAA
TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCG
AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
TGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGACGTAGTGCCCACCCGCCCGCACTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACACAGAGGGGGACCC
GATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCA
Found at i:16316365 original size:26 final size:26
Alignment explanation
Indices: 16316335--16316387 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16316325 GTTGACTTAG
*
16316335 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16316361 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16316387 G
1 G
16316388 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16317277 original size:26 final size:26
Alignment explanation
Indices: 16317247--16317299 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16317237 GTTGACTTAG
16317247 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16317273 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16317299 G
1 G
16317300 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16318183 original size:26 final size:26
Alignment explanation
Indices: 16318147--16318199 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16318137 GTTGACTTAG
*
16318147 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16318173 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16318199 G
1 G
16318200 ATCAGACCCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16318606 original size:896 final size:893
Alignment explanation
Indices: 16315852--16318942 Score: 4256
Period size: 896 Copynumber: 3.5 Consensus size: 893
16315842 GGTAGGCTAG
* ** *
16315852 GAGTTTTTAGCTGAATTTTTTTGTGCATTCCACCAAAAATACAAGGATCACGTCTACCAAGTTTA
1 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * **
16315917 GGGCCAAAACCACTTTCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTG
66 GGGCCAAAA-TACTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTG
* *
16315982 AAAAATAGAATA-CAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
130 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
16316046 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
195 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
*
16316111 ACCC--T--AT---C--C---CG--T--C-TCT-T-TGGCCGGCGTAGTGCCCG----CCCGCCC
260 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCC
* * * *
16316153 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTAA
325 GCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAA
* ** * * * * * *
16316218 GGGTTGGGGCAATAGGATTGGCAGCACGCGGA-GGAGGACCCGACCGATCCCCGACTTGCGCATC
390 GGGTTGCGGCAGCAGGATCGACAGCA-GTGAAGGGGGGACCCGACCGATCCCAG-CTTGCGCATC
* * * * * *
16316282 CTGCCCTTCTGGCCGACTGAGTGCCCGTACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTT
453 CCGCCCATCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
* * * **
16316347 CATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGCCCAAGGGTTGCTA
518 CATTCCCAGTCTAAGCATACG-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG
* * * * * * *
16316412 CAGCACATGCAGAGCTTGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCAGCATCGCCGG
582 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCGG
*
16316477 AGCATCG-CTGGAGAACCTAACCGACGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGCGGTG
647 AGCATCGAC-GGAGAACCTGACCGACGGCATT-GGGTTCCAGCGATCGGGGGGGCCGGGG-GGTG
* * *
16316541 TGCGCACATGTTGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAA
709 TGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
16316606 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAAT
774 ACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
16316671 TAAAGTGTCTGAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTC
838 TAAAGTGTCTGAAATGGGGACACTTT-TTCAAATGGTCACAAAATCTTGTACACTTC
* *
16316728 GAGTTTTTAGTTGAATTTTTTTGTCCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
1 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * *
16316793 GGGCCAAAAAACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCGAAAAGTTTTGAAAATCGTA
66 GGGCCAAAATA-CTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTG
* *
16316858 AAAAATAGAAAACGAGTCGTCTT-CACATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATG
130 AAAAATAGAAAATGAGTCGTCTTGC-CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
16316922 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
194 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
16316987 CACCCTATCGATCCACGACTAGCGCATCCCGTTTCTCTGCCCGACGTAGTTCCCGCCCTCCCGCC
259 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG-T---G----CCCG-C
* * *
16317052 CGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGAAGTTCATTCCTAGTCTAAGAT
315 C-CAC-C-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
* * * * * *
16317117 TGGACTGGACCAAGTGTTGCGGCAGCAGGATCAATAGCA-TGCAGAGGGGGACCCGACCGATCCC
377 CGGACCGGACCAAGGGTTGCGGCAGCAGGATCGACAGCAGTGAAG-GGGGGACCCGACCGAT-CC
* * *
16317181 CGGCTTGCGCATCCCGCCCCTCTGGCGGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTA
440 CAGCTTGCGCATCCCGCCCATCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTA
*
16317246 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGA
505 GGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCAGA
* *
16317311 CCGAGGGTTGCGGCAGCACATGCTCGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGG
569 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGG
* * * * * * *
16317376 GCACCATCGTCGGAGCGTC-ACCGGAGAACATGACTGACGACATTGAGGTTCCGGTGATCGGGGG
634 GCACCATCGCCGGAGCATCGA-CGGAGAACCTGACCGACGGCATTG-GGTTCCAGCGATCGGGGG
16317440 GGCCGGGGGG-GTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
697 GGCCGGGGGGTGTGT--GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
16317504 CTATCCCTCATCAAACCACGATAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
760 CTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
**
16317569 TGTAAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
825 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTAC
16317634 ACTTC
889 ACTTC
* * * * *
16317639 GAGTTTTTAGTTGAATTTTTTTGTGCCTGCCAACAAAAATACAAGGATCACATCTACCAAGGATT
1 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA-GTTT
* *** *
16317704 -GGGCCAAAATTATTTTTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCT-AAAATCG
65 GGGGCCAAAA-TACTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT-TGAAAATCG
16317767 TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
128 TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
16317832 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTA
193 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* *
16317897 CCACCCTATCGATCAACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGC
258 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGC
* * * * *
16317962 CCGCTCATTTCGTCGATTGGCTTAGGCATGCGAAGTTCATTCCTAGTCTAAGATCGGACCGGATC
323 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * *
16318027 AAGGGTTGCGGTAGCAGGATCGACAGCATGTGAAGGGGGGACTCGACCGATCCTCAGCTTACGCA
388 AAGGGTTGCGGCAGCAGGATCGACAGCA-GTGAAGGGGGGACCCGACCGATCC-CAGCTTGCGCA
* * * *
16318092 TCCCGCCCATGTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAG
451 TCCCGCCCATCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
* * * *
16318157 TTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCCGATCGAGGGTTAC
516 TTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
* * * * * *
16318222 GGTAGCACATGCTGGGCTCGGGCA-GT-CTGGTGCCACATTGTTCTTCATCAAGGCACCATTGCC
580 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCC
* *
16318285 GGAGCATCGACGG-GAACCTGACCGGCGGTATTGGGCTTCCAGCGATCGGGGGGGCCGGGGGGTG
645 GGAGCATCGACGGAGAACCTGACCGACGGCATTGGG-TTCCAGCGATCGGGGGGGCCGGGGGGTG
16318349 TGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
709 TGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
16318414 ACCTCAAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATT
774 ACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
16318479 AAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTTTACACTTC
839 AAAGTGTCTGAAATGGGGACACTTTTT-CAAATGGTCACAAAATCTTGTACACTTC
16318535 GAGTTTTTAGCTGAATTTTTTTTGTGCATG-CAAAAAAAATACAAGGATCACGTCTACCAAGTTT
1 GAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
16318599 GGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCAT
65 GGGGCC-AAAATACTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGT
*
16318664 GAAAAATAGAAAATGAGTCGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
129 GAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
16318729 AATTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
194 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
16318794 CACCCTATCAAACCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCC
259 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCC
* * *
16318859 CGCCCACTCGTTTCGTCGGTTGGCTTCGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA
324 CG----CTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGG
* *
16318924 ACCAAGGGTTTCGACAGCA
385 ACCAAGGGTTGCGGCAGCA
16318943 CATGCTGGGC
Statistics
Matches: 1964, Mismatches: 184, Indels: 110
0.87 0.08 0.05
Matches are distributed among these distances:
875 1 0.00
876 125 0.06
877 117 0.06
879 1 0.00
881 2 0.00
884 1 0.00
886 1 0.00
889 2 0.00
891 1 0.00
893 1 0.00
894 2 0.00
895 10 0.01
896 462 0.24
897 57 0.03
898 44 0.02
899 90 0.05
900 234 0.12
901 6 0.00
902 2 0.00
903 4 0.00
904 4 0.00
907 1 0.00
910 7 0.00
911 378 0.19
912 405 0.21
913 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
GGGCCAAAATACTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGA
AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCG
CTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAG
GGTTGCGGCAGCAGGATCGACAGCAGTGAAGGGGGGACCCGACCGATCCCAGCTTGCGCATCCCG
CCCATCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGC
ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCGGAGCA
TCGACGGAGAACCTGACCGACGGCATTGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGTGCAC
ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
GAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
CTGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTC
Found at i:16319799 original size:26 final size:26
Alignment explanation
Indices: 16319763--16319814 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16319753 GTTGACTTAG
*
16319763 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16319789 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16319815 TATCCGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16320706 original size:26 final size:26
Alignment explanation
Indices: 16320655--16320707 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16320645 GTTGACTTAG
*
16320655 GCATACGGAGTTCATTCCTAGCCTAA
1 GCATACGGAGTTCATTCCTAACCTAA
*
16320681 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATTCCTAACCTAA
16320707 G
1 G
16320708 ATCGGACCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAACCTAA
Found at i:16321582 original size:26 final size:26
Alignment explanation
Indices: 16321553--16321605 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16321543 GTTGACTTAG
*
16321553 GCATACTGG-GTTCATTCCCAGTCTAA
1 GCATAC-GGAGTTCATTCCCAATCTAA
16321579 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16321605 G
1 G
16321606 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16321689 original size:898 final size:896
Alignment explanation
Indices: 16318887--16326419 Score: 9689
Period size: 892 Copynumber: 8.5 Consensus size: 896
16318877 GTTGGCTTCG
* * * * *
16318887 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTTCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** *
16318952 CTCGAGCATGTGCTGGTGCCACATTTTTCTTTGTTGGGGCACCATTGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
16319017 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGTGCACATGATGAGC
131 ACCTGACCGGCGGCATTGGGGTTTCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
16319082 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACGTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
16319147 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATCAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
16319212 GGGACACTTTTTT-AAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
16319276 GCATGCCAACAAAAGTAAAAGGATAACGTCTACAAAGTTTGGGGCCAAAACTCCTTTC-AAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* ** * *
16319340 TTTTTACAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTT
455 -TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
16319405 GCCATGGAACTTCACGTGAAGGCTTAAGGAACCATTGTAAGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
16319470 TTGGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCATGGCTTGCA
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** *
16319535 CATCCCGTCTCTCTGGCCGGGGTAGTGCCTGCCCGCCCTCCCACCCGCTTATTTCGTCGGTTGGC
649 CATCCCGTCTCTCTGGCCGACGTA-TGCC-GCCCG-CCT---ACCCGCTCATTTCGTCGGTTGGC
* ** * * * * *
16319600 TTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGAACTGAGGGTTGCGGTAGCATGATC
708 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGCAGGATC
* ** * * * ** *
16319665 AGCAGCACACAGAAAGGGACCCGACCGATCCCCGGCTTTCGCATCCCGTCTTTCTGGCCGACTGA
773 AGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
* * * * *
16319730 GCGCCCGTATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
838 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
16319789 GCATACGGAGTTCATTCCCAGTCTAATATCCGACCGGACCGAGGGTTGTGACAGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
16319854 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGTGG-A--A----C----CATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* ** * * **
16319908 ACCTGACTGGCGATATTGAGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTTCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* *
16319973 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAA
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
16320038 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
16320103 GGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGACTTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** *
16320168 TGCATCCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAGACCTTCCCAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** * *
16320232 ATTTTAAAAATTCTTGAACCGCAAAAAGTTTCAAAAATGGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
**
16320297 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATCACA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
16320362 TTGGCAAGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATTGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
16320427 CATCCCGTCTCTCTGGCCGACGTAATGCC-CACTCGCCCGTCCGCCCGCTCATTTCGTCGGTTGG
649 CATCCCGTCTCTCTGGCCGACGT-ATGCCGC-C-CG-CC-T--ACCCGCTCATTTCGTCGGTTGG
*
16320491 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TCAGACTGAGGGTTGTGGCAGCAGGA
707 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACTGAGGGTTGTGGCAGCAGGA
* *** * ** * * * *
16320555 TC-GTTAGTTTGCAGAGGGGGGCTTGGCCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCCGT
771 TCAG-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGC
* * *
16320619 TGAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGCCTAA
835 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * * * *
16320681 GCATACGGAGTTCATTCCTAATCTAAGATCGGACCATACCGATGGTTGCAGCAGCACGTGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** **
16320746 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
16320811 AGCTGACCGGCGGCATTAGGGTTTCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTTCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
16320876 GATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
16320941 CCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCCGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
16321006 GGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * ** *
16321071 GCATGCAAAAAAAAATACAAGGATCACATCTAAAAAATTTTGGGGCCAAAACTCCTTCCGAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCT-ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
16321136 ATTTTAAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
454 ATTTT--AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
16321201 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
16321266 CATTGGCATGCATAAATATGAAGATGTCCCTAAATCCAACTACCACCCTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
16321331 CGCATCCCGTCTCTCTGGCCGACGTA-G-CGCCCGCCTACCCGTTCTTTTCGTCGGTTGGCTTAG
647 CGCATCCCGTCTCTCTGGCCGACGTATGCCGCCCGCCTACCCGCTCATTTCGTCGGTTGGCTTAG
* * *
16321394 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGACAGTAGGATCAACA
712 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGCAGGATCAGCA
* * * ** * *
16321459 GCATGCAGAGGGGGACCCAACCGGTCATCGGCTTGCGCATCTTGCCCCTCTGGCTGGCTGAGCGC
777 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
* * *
16321524 CCGCATGCTCATTTTATGGGTTGACTTAGGCATACTGG-GTTCATTCCCAGTCTAA
842 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC-GGAGTTCATTCCCAGTCTAA
* * * **
16321579 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCAAGGGTTGCAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
16321644 CTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
16321709 ACCTGACCGGCGGCATTGGGG-TTCCAGCGATCAGGGGGGCCGGGGGGTGTGCCCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTTCGA-CGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
16321773 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
16321837 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
16321902 GGGGACACTTTTTTCAACTGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
16321967 TGCATGCCAAAAAAAATACAAAGATCATGTCTACCAAGTTTGGGTCCAAAACTCCTTTCG-AAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** *
16322031 ATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
16322096 GCCATGAAAC-T----T-----C-------A-C---G--TGAATTTACAACCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * * *
16322138 TTGGCACACAGAAATATGAAGATCTGCCTAAACCCACCTACCACCGTATTGATCCATGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
16322203 CATCTCGTTTCTCTGGCCGACGTA-GTC-CCCGCCTACCCGCCTACTCGTTTCGTCGGTTGGCTT
649 CATCCCGTCTCTCTGGCCGACGTATGCCGCCCGCCTACCCG----CTCATTTCGTCGGTTGGCTT
** *** ** *
16322266 AGGCATACAAAGTTCATTCCCAGTCTAAGATC-GAACCAAACTGAGGGTTACGGTAGCAGGATCA
710 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACTGGACTGAGGGTTGTGGCAGCAGGATCA
* * * * * *
16322330 GCAGCATGTAGAAGGGGACCCGATCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAA
774 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
* * *
16322395 CGCCCGCACGCTCGTTTCGTAGGTTGACTGAGGCATACGGAGTTCATTCCCAGTCTAA
839 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
16322453 G-AT-C-G-G---A-T--C-G----A-A-C---T------GAGGGTGGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
16322492 CTCGGGCAAGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC---G-A-------AGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * *
16322546 ACCTGACCGGCGACGTTTGGG-TTCTGACGATCGGGGGGGCCAGGGGGTGTGCGCATATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTTC-GACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* ***
16322610 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCTGTTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
16322675 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
16322740 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
16322805 TGCATGCCAACAAAAATATAAGGATAACGTCTACCATGTTTGGGG-CAAAACACCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * *
16322869 ATTTTAAAAAATCTCTAACCGTAAAAACTATCAAAAATCGTAAAAAATAGAAAATGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
16322934 GCCATTAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
16322999 TTGGCATGCACAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTTCCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
16323064 CATCCCGTCTCTTTGGTCGGCGTAGTGCCTTCCCACCCACCTGCCCGCTCATTTCGTCGGTTGGC
649 CATCCCGTCTCTCTGGCCGACGTA-TG-----CCGCCCGCCTACCCGCTCATTTCGTCGGTTGGC
* * * * *
16323129 TTAGGCATACGGAGTTCATTACCAGTCTAAGATCATACCGGA-TCGAGGGTTATGGCAGCAAGAT
708 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACT-GAGGGTTGTGGCAGCAGGAT
* * * *
16323193 CAGCAGCACGTAGA-GGGGACCCGGCCAATCCCCGGCTTGCACATCCCT-CCCCTCTGGCCGGCT
772 CAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT-CCTGCCCCTCTGGCCGGCT
* * * *
16323256 GAGAGCCCGCATGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
16323317 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
16323382 CTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
16323447 ACCTGACCGGCGGCATTGGGGTTCCAACGATCGGGGGGGCGGGGGGTGTGCACACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
16323512 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
16323577 CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGTCGGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
16323642 GGACATTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
16323707 CATGCCAACAAAAATAGAAGGATAACGTCTACCAGGTTTGGGGCCAAAACACCTTCCGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-
* * * *
16323772 TTTTAAAAAATCCCGAACCGTAAAAACTTTCAAAAATCGTAAAAAATAAAAAATGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
16323837 CCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * *
16323902 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGGTCCACGGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* ** * * *
16323967 ATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTATG
650 ATCCCGTCTCTCTGGCCGACGTA-TG-CCGCCCGCCTACCCGCTCATTTCGTCGGTTGGCTTAGG
* * ** * *
16324032 CGTACGGAGTTCATTCCCTGTCTAAGATTGGACTGGACCGAGGGTTGTGGCAGCAAGATCAGCAG
713 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGCAGGATCAGCAG
* * * ** * * * *
16324097 CATGCAGAAGGGGACCCAACCGATCCCCGGCTTTTGCATCGTGCCCCTCTGGTCGGTTGAGAGCC
778 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* * * *
16324162 CGTACGATCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** ** * * *
16324216 GAATATGGAGTTCATTCCAAGTCTAAGATCAAATCGGATTGAGGGTTACAGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
16324281 CTCGGGCATGTGCTGGTGCCGCAATTTTCTTTGCCGGGGCACCATCGCCGAAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
16324346 ACCTGATCGGCGGCATTTGGGTTCCGACGATAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* ** * *
16324411 ATTGGTGCTGGTACTTCACCCTTATATTGACCACCTATCCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
16324476 CCCCTTAAAGAGCGTTTGAGATTTTTCAGGTTTGCTACCAGTAGCCATTACAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
16324541 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTCTTTAGCTGAATTTTTTTATG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
16324606 CATTCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * *
16324670 TTTAAAAAATCCCAAACTGCAAAAAGCTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
456 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * * *
16324735 CATGAAACATCACGTGAAGGCTTAAAGGACCATTGTATGAATTTGCAAGCCATAACAATGGCATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
16324800 GGCACT-TAGAAATAGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGC
586 GGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
16324864 ATCCCGTCTCTTTGGCCGACGTAATGCCCGCTCGCTCGTTCTCCCACTCATTTCGTCGGTTGGCT
650 ATCCCGTCTCTCTGGCCGACGT-ATG-CCGCCCGC-C--T-ACCCGCTCATTTCGTCGGTTGGCT
* * * * *
16324929 TAGACATACAGAGTTCATTCCCAGTCTAAGATCGGA-TCAGACTGAGGGTTG-GAGCAACAGGAT
709 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACTGAGGGTTGTG-GCAGCAGGAT
* * ** * * * ** *
16324992 C-GCTAGCACACAGAGGGGG-GCCGGTCGATCCCCGACTTGCGCATCATGCCCCTCTAGTTGGTT
772 CAGC-AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCT
* * *
16325055 GAGCGCCTGCATGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
16325116 GCATGCGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * * * * *
16325181 CTCAAGCAAGTGCTGCTGCCGTATTTTTCTTTGCTGGGGCAGCATCGTCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * *
16325246 ACCTGACCGGTGGCATTGGGGTTTCGATGATTGGGTGGGTCGGGGGGTGTGCGCACATGATGTAC
131 ACCTGACCGGCGGCATTGGGGTTTCGACGATCGGG-GGGCCGGGGGGTGTGCGCACATGATGTGC
16325311 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
16325376 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
16325441 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTATAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
16325506 GCATGCCAA-AAAAAGTACAAGGATCACATTTACCAAGTTTGGGTCCAAAACTCATTCCCAAAAA
390 GCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
16325570 ATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAGAGAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* ** *
16325635 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATGGTATGAAAATACAAACCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
16325700 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * ** * ** * *
16325765 CATCCCGTCTCTCTGGCTGGCATA-G-TG-CATCC-A-CGGCTTGTTTCGTCAGTTGGCTTAAGC
649 CATCCCGTCTCTCTGGCCGACGTATGCCGCCCGCCTACCCGCTCATTTCGTCGGTTGGCTTAGGC
* * ** ** * *
16325825 ATACGTAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGCTCCGATAGCAAGATCGGCAGC
714 ATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGCAGGATCAGCAGC
** * * *
16325890 ACGCAGAGGGGGACCC-AGCCGAT-TTCGGACTCGCGCATCCCGCCCCTCTGGTCGGCTGAGCGC
779 ACGCAGAGGGGGACCCGA-CCGATCCCCGG-CTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
*
16325953 CCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * * * *
16326008 GCGTATTGACTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCGGTAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
16326073 CTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
16326138 ACCTGACCGGCGACATTGGGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* ** **
16326203 ATGGGTGCTGGTACTTGGCCTTTATATTGGCCCTGTATCCCTCATCAAACCGT-GAGAACTTGCA
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACA
16326267 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
16326332 GGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
16326397 GCATGCCAACAAAACTACAAGGA
390 GCATGCCAACAAAAATACAAGGA
16326420 CCGGACTGAG
Statistics
Matches: 5817, Mismatches: 674, Indels: 291
0.86 0.10 0.04
Matches are distributed among these distances:
837 100 0.02
838 263 0.05
839 1 0.00
843 1 0.00
844 1 0.00
845 1 0.00
848 67 0.01
854 1 0.00
855 1 0.00
856 1 0.00
857 1 0.00
858 1 0.00
859 2 0.00
861 99 0.02
863 1 0.00
864 99 0.02
865 87 0.01
866 1 0.00
867 2 0.00
868 2 0.00
869 10 0.00
870 115 0.02
871 3 0.00
872 3 0.00
873 5 0.00
874 174 0.03
875 2 0.00
876 1 0.00
879 1 0.00
880 1 0.00
881 1 0.00
883 1 0.00
884 1 0.00
888 1 0.00
890 71 0.01
891 355 0.06
892 873 0.15
893 159 0.03
894 1 0.00
895 11 0.00
896 24 0.00
897 391 0.07
898 531 0.09
899 462 0.08
900 486 0.08
901 355 0.06
902 774 0.13
903 48 0.01
904 27 0.00
905 1 0.00
906 197 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTATGCCGCCCGCCTACCCGCTCATTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGCAGGATCAGCAGCAC
GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGC
ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16323320 original size:26 final size:26
Alignment explanation
Indices: 16323291--16323343 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16323281 GTTGACTTAG
16323291 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16323317 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16323343 G
1 G
16323344 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16324409 original size:899 final size:896
Alignment explanation
Indices: 16322427--16326419 Score: 5472
Period size: 900 Copynumber: 4.5 Consensus size: 896
16322417 GTTGACTGAG
* * * *
16322427 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACTGAGGGTGGCGGCAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATTGAGGGTTGCGGCAGCACATGCTGGG
*
16322492 CTCGGGCAAGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC---G-A-------AGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * * *
16322546 ACCTGACCGGCGACGTTTGGGTTCTGACGATCGGGGGGGCCAGGGGGTGTGCGCATATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* ***
16322611 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCTGTTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
16322676 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
16322741 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
16322806 GCATGCCAACAAAAATATAAGGATAACGTCTACCATGTTTGGGG-CAAAACACCTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAA
* * * *
16322870 TTTTAAAAAATCTCTAACCGTAAAAACTATCAAAAATCGTAAAAAATAGAAAATGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGTAAAAACTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTG
* *
16322935 CCATTAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
16323000 TGGCATGCACAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTTCCGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
16323065 ATCCCGTCTCTTTGG-TCGGCGTAGTGCCTTCCCACCCACCTGCCCGCTCATTTCGTCGGTTGGC
650 ATCCCGTCTCTCTGGCT-GACGTAGTGCC--CCC-CGCACC-GCCCGCTCATTTCGTCGGTTGGC
* * * * *
16323129 TTAGGCATACGGAGTTCATTACCAGTCTAAGATCATACCGGATCGAGGGTTATGGCAGCAAGATC
710 TTA-GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAAGATC
* * * * *
16323194 AGCAGCACGTAGAGGGGACCCGGCCAATCCCCGGCTTGCACATCCCT-CCCCTCTGGCCGGCTGA
774 AGCAGCACGCAGAGGGGACCCAGCCGATCCCCGGCTTGCGCAT-CCTGCCCCTCTGGTCGGCTGA
* * *
16323258 GAGCCCGCATGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 GAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
16323317 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATTGAGGGTTGCGGCAGCACATGCTGGG
* * *
16323382 CTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
16323447 ACCTGACCGGCGGCATTGGGGTTCCAACGATCGGGGGGGCGGGGGGTGTGCACACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
16323512 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
16323577 CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGTCGGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
16323642 GGACATTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
16323707 CATGCCAACAAAAATAGAAGGATAACGTCTACCAGGTTTGGGGCCAAAACACCTTCCGAAAAAAT
391 CATGCCAACAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAA-
* *
16323772 TTTTAAAAAATCCCGAACCGTAAAAACTTTCAAAAATCGTAAAAAATAAAAAATGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGTAAAAACTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTG
*
16323837 CCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
16323902 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGGTCCACGGCTTGCGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
16323967 ATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGC-CCGCCCGCTCGTTTCATCGGTTGGCTTAT
650 ATCCCGTCTCTCTGGCTGACGTAGTGCCC-CCCGCACCGCCCGCTCATTTCGTCGGTTGGCTTA-
* * **
16324031 GCGTACGGAGTTCATTCCCTGTCTAAGATTGGACTGGACCGAGGGTTGTGGCAGCAAGATCAGCA
713 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAAGATCAGCA
* * ** * *
16324096 GCATGCAGAAGGGGACCCAACCGATCCCCGGCTTTTGCATCGTGCCCCTCTGGTCGGTTGAGAGC
778 GCACGCAG-AGGGGACCCAGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGAGC
* * * *
16324161 CCGTACGATCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * *
16324216 GAATATGGAGTTCATTCCAAGTCTAAGATCAAATCGGATTGAGGGTTACAGCAGCACATACTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATTGAGGGTTGCGGCAGCACATGCTGGG
* * * *
16324281 CTCGGGCATGTGCTGGTGCCGCAATTTTCTTTGCCGGGGCACCATCGCCGAAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
16324346 ACCTGATCGGCGGCATTTGGGTTCCGACGATAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* ** * *
16324411 ATTGGTGCTGGTACTTCACCCTTATATTGACCACCTATCCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
16324476 CCCCTTAAAGAGCGTTTGAGATTTTTCAGGTTTGCTACCAGTAGCCATTACAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
16324541 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTCTTTAGCTGAATTTTTTTATG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
16324606 CATTCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
391 CATGCCAACAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAAT
* * * *
16324670 TTTAAAAAATCCCAAACTGCAAAAAGC-TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
456 TTTAAAAAATCCCGAACCGTAAAAA-CTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTG
* * * *
16324734 CCATGAAACATCACGTGAAGGCTTAAAGGACCATTGTATGAATTTGCAAGCCATAACAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * *
16324799 TGGCACTTAGAAATAGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * *
16324864 ATCCCGTCTCTTTGGCCGACGTAATGCCCGCTCGCTCGTTCTCCCACTCATTTCGTCGGTTGGCT
650 ATCCCGTCTCTCTGGCTGACGTAGTGCCC-CCCGCAC---CGCCCGCTCATTTCGTCGGTTGGCT
* * * * * *
16324929 TAGACATACAGAGTTCATTCCCAGTCTAAGATCGGA-TCAGACTGAGGGTTG-GAGCAACAGGAT
711 TAG-CATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGTG-GCAGCAAGAT
* ** * * * * * * *
16324992 C-GCTAGCACACAGAGGGGGGCCGGTCGATCCCCGACTTGCGCATCATGCCCCTCTAGTTGGTTG
773 CAGC-AGCACGCAGAGGGGACCCAGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCGGCTG
* * * *
16325056 AGCGCCTGCATGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 AGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** *
16325116 GCATGCGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATTGAGGGTTGCGGCAGCACATGCTGGG
** * * * * * * *
16325181 CTCAAGCAAGTGCTGCTGCCGTATTTTTCTTTGCTGGGGCAGCATCGTCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * * *
16325246 ACCTGACCGGTGGCATTGGGGTTTCGATGATTGGGTGGGTCGGGGGGTGTGCGCACATGATGTAC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGTGTGCGCACATGATGTGC
16325311 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
16325376 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
16325441 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTATAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * * *
16325506 GCATGCCAA-AAAAAGTACAAGGATCACATTTACCAAGTTTGGGTCCAAAACTCATTCCCAAAAA
390 GCATGCCAACAAAAA-TACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAA
* * * * *
16325570 ATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAGAGAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAACTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTT
* ** *
16325635 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATGGTATGAAAATACAAACCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
16325700 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** ** *
16325765 CATCCCGTCTCTCTGGCTGGCATAGTG--CATC-CA-CG---GCTTGTTTCGTCAGTTGGCTTAA
649 CATCCCGTCTCTCTGGCTGACGTAGTGCCCCCCGCACCGCCCGCTCATTTCGTCGGTTGGCTT-A
* * * ** ** *
16325823 GCATACGTAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGCTCCGATAGCAAGATCGGCA
713 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAAGATCAGCA
** * * *
16325888 GCACGCAGAGGGGGACCCAGCCGAT-TTCGGACTCGCGCATCCCGCCCCTCTGGTCGGCTGAGCG
778 GCACGCAGA-GGGGACCCAGCCGATCCCCGG-CTTGCGCATCCTGCCCCTCTGGTCGGCTGAGAG
*
16325952 CCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
16326008 GCGTATTGACTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCGGTAGCACATGTTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATTGAGGGTTGCGGCAGCACATGCTGGG
* * * *
16326073 CTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
16326138 ACCTGACCGGCGACATTGGGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* ** **
16326203 ATGGGTGCTGGTACTTGGCCTTTATATTGGCCCTGTATCCCTCATCAAACCGT-GAGAACTTGCA
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACA
16326267 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
16326332 GGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
16326397 GCATGCCAACAAAACTACAAGGA
390 GCATGCCAACAAAAATACAAGGA
16326420 CCGGACTGAG
Statistics
Matches: 2752, Mismatches: 313, Indels: 75
0.88 0.10 0.02
Matches are distributed among these distances:
890 106 0.04
891 301 0.11
892 240 0.09
893 1 0.00
894 2 0.00
897 207 0.08
898 141 0.05
899 461 0.17
900 494 0.18
901 351 0.13
902 447 0.16
903 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATTGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAACTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCTGACGTAGTGCCCCCCGCACCGCCCGCTCATTTCGTCGGTTGGCTTAGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAAGATCAGCAGCA
CGCAGAGGGGACCCAGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGAGCCCGC
ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16325119 original size:26 final size:26
Alignment explanation
Indices: 16325090--16325142 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16325080 GTTGACTTAG
16325090 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16325116 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16325142 G
1 G
16325143 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16327416 original size:26 final size:26
Alignment explanation
Indices: 16327379--16327431 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16327369 GTTGACTTAG
*
16327379 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16327405 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16327431 G
1 G
16327432 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16328283 original size:26 final size:26
Alignment explanation
Indices: 16328254--16328305 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16328244 GTTGACTTAG
*
16328254 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16328280 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16328306 AATCAGATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16330061 original size:26 final size:26
Alignment explanation
Indices: 16330009--16330061 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16329999 GTTGACTTAG
*
16330009 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCACTCCCAGTATAA
* *
16330035 GCATACGGAGTTCACTCCTAGTCTAA
1 GCATACGGAGTTCACTCCCAGTATAA
16330061 G
1 G
16330062 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTATAA
Found at i:16331808 original size:26 final size:26
Alignment explanation
Indices: 16331779--16331831 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16331769 GTTGACTTAG
16331779 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
16331805 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16331831 G
1 G
16331832 ATCGCATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16333122 original size:26 final size:26
Alignment explanation
Indices: 16333085--16333141 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
16333075 GTTTGGGGCC
* *
16333085 AAAA-CTCCATCCGAAAAAATTTTTT
1 AAAATCTCCATCCGAAAAAAGTTTTG
* *
16333110 AAAATCTCGATCCGTAAAAAGTTTTG
1 AAAATCTCCATCCGAAAAAAGTTTTG
16333136 AAAATC
1 AAAATC
16333142 GTGAAAAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
25 4 0.15
26 23 0.85
ACGTcount: A:0.44, C:0.18, G:0.09, T:0.30
Consensus pattern (26 bp):
AAAATCTCCATCCGAAAAAAGTTTTG
Done.