Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 104 of 190
Found at i:16333666 original size:26 final size:26
Alignment explanation
Indices: 16333637--16333689 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16333627 GTTGACTTAG
16333637 GCATAC-GAAGTTCATTCCAAATCTAA
1 GCATACAG-AGTTCATTCCAAATCTAA
*
16333663 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCAAATCTAA
16333689 G
1 G
16333690 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAATCTAA
Found at i:16334567 original size:25 final size:25
Alignment explanation
Indices: 16334539--16334586 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
16334529 GTTGACTTAG
16334539 GCATACAGAGTTCATTCCCAGTCAA
1 GCATACAGAGTTCATTCCCAGTCAA
*
16334564 GCATACGGAGTTCATTCCCAGTC
1 GCATACAGAGTTCATTCCCAGTC
16334587 TAAGATCACA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCCAGTCAA
Found at i:16335675 original size:896 final size:896
Alignment explanation
Indices: 16333620--16339848 Score: 7712
Period size: 896 Copynumber: 7.0 Consensus size: 896
16333610 CATATTTTTC
* * * * *
16333620 TTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCAAATCTAAGCATACAGAGTTCATTCCCAAT
1 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGA-AGTTCATTCCCAGT
** * * *
16333685 CTAAGATCAGACCAGACCGAGGGTTGCAACAGCACATTCTGGGCTCGAGAATGTGCTGGTGCCGC
65 CTAAGATCAGA-CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * *
16333750 ATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGT
129 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGT
* ** *
16333815 TCCGACGATCGGGGGGGCCGGGCGGGTGTGCGCACATGATGTAAGATGGGTGCTGGTGCTTGGCC
194 TCCGACGATCGGGGGGGCCGAG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
16333880 CTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCATACCCCCTTAAAGAGCATTTGAG
258 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * * *
16333944 ATTTTACAGGTTTGCTGTCAGTAGCCATTAAAATGTCTTAAATGGGGGCACTTTTTTCAAATGGT
323 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGT
* * *
16334009 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATAAAAG
388 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAG
* * * * * *
16334074 GATCACGTCTACCAAGTTTGGGG-CAAAACTCCATCTGAAAAAATTTTAAAAAATCCCAAACCGT
453 GATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGC
* * * *
16334138 AAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTTCCATGAATCTTCACGTGAAGG
518 AAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * * * *
16334203 CTTAAGGGACCACTATAAGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGA
583 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGA
* * *
16334268 TGTACCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCG
648 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * *
16334333 TAGTGCCCGCCCTCCCACCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCC
713 TAGTGCCCG----CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * *
16334398 CAGTCTAAGATCGGACCAGACTGAGGGTTGCAGTAGCAGGATCGGTAGCACACAGAAGGGGACCC
774 CAGTCTAAGATCAGACCA-ACTGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGGGACCC
* * * * * * * *
16334463 GATCGATCCCTGGCTTTCACATCCCGCCCCTCTGGCCGGCTGAGCACCTGCATGCTCGT
838 GATCGATCCCCGGCTTGCGCAACCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* * *
16334522 TTAC-TAGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC-AAGCATACGGAGTTCATTCCCAG
1 TT-CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-GAAGTTCATTCCCAG
* * * * *
16334585 TCTAAGATCACACCGTACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGGGCCG
64 TCTAAGATCAGACAG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * * * *
16334650 CATTTTTCTTCGCCAGGGAACCATTGCCGGAGGATCATCGGACAACCTGACCGGCGGCATTGGGG
128 CATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGG
* * * * * * * *
16334715 -TCCGACGATCGGAGGAGTCGGGGGGGTGTGCGCACATGATGTGAGATGAGTGCTAGTTCTTGGC
193 TTCCGACGATCGG-GGGGGCCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
16334779 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGA
257 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
*
16334844 GATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGG
322 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGG
* *
16334909 TCATAAAATCTTGTACACTTCGAGTTTTTAGCTTAATGTTTTTGTGCATGCC-A-AAAAATACAA
387 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAA
* * * *
16334972 GGATCACGTCTACCAAGTATGGGGCCAAAATTTCC-TCCGAAAAAAATTTAAAAAATCTCGAACT
452 GGATCACGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCCGAAAAAATTTTAAAAAATCTCGAACC
* * * * *
16335036 GCATAAAGTTTTGAACATTGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAA
516 GCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
16335101 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAA
581 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAA
* * * *
16335166 GATGTGCCTAAACACACCTACCACCCTACCGATCCATGACTTGCGCATCCCGTCTCTCTGGCCGG
646 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * *
16335231 CGTAGTGCCTC-CCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGGTCATTCCC
711 CGTAGTGCC-CGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
** * * * *
16335295 AGTCTAAGATTGGATCGAATTGAGGGTTGCAGCAGCAGGATTGGTAGCACGCAGAGGGGGACCCA
775 AGTCTAAGATCAGA-CCAACTGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCG
* * * * *
16335360 ACCGATCCTCGGCTTGCGCAACCTG-CCCTCTGGCCGGCTCAGTGCCCGCATGCTCGT
839 ATCGATCCCCGGCTTGCGCAACCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* * *
16335417 TTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCCTGAGAAGTTCATTCCCAGT
1 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT-AGAAGTTCATTCCCAGT
* ** * * ** * *
16335482 CTAAGATCAGATTAGATTGAGGGTTCCAGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCTGT
65 CTAAGATCAGA-CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* *
16335547 ATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGAACCTGACCGGTGGCATTGGGGT
129 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGT
* * *
16335612 TCTGATGATCGGGGGGGTCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
194 TCCGACGATCGGGGGGGCCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * *
16335677 TTATATTGGCCCCTTATCCCTCATCAAACCTCGACAACTCACACCCCCTTAAAGAGCATTTGAGA
259 TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * * * *
16335742 TTTTACCGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATTGTC
324 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTC
* * *
16335807 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGGCATGGCAACAAAAATACAAGG
389 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGG
* * *
16335872 ATCACG--T-CCAAGTTTGGGCCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGC
454 ATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTT-AAAAAATCTCGAACCGC
* * * *
16335934 AAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCTCGTGAAGC
518 AAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
16335999 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACATGTAGAAATATGAAGA
583 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGA
* * * * *
16336064 TGTGCCTAAACCCAGCTACCAACCTATCGATCCACGGCTTGCACATCCCGTCTCTTTGGCTGGCG
648 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * *
16336129 TAGCGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGATTAGGCATACGGAGTTCATTCC
713 TAGTGCCCGCCCG--C--CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * *
16336194 CAGTCTAAGGTCAGACCGGACCGAGGGTT---GTAGCA-G--C---A-CA--CAGAGGGGGA-CC
774 CAGTCTAAGATCAGACC-AACTGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGGGACCC
* * ** * *
16336246 GA-CTGAATCCCCGGCTTGTGC-ATCTCGCCCCTCTGGTAGGCTGAGCGTCCGCACGCTAGT
838 GATC-G-ATCCCCGGCTTGCGCAACCT-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
16336306 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-T--AAG---A-T--C-G--
1 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGAAGTTCATTCCCAGTC
* * * * **
16336354 ---GA-CCG--A-ACCGAGGGTTGCGGTAGCACATGCTGGGCTTGGGAATGTGCTGGTGATGCAT
66 TAAGATCAGACAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
** * * * *
16336412 TTTTCTTCACCGGGGCACCAT-GCCGGAGCATCACTGGAGAACCTAACTGGCGGCATTGGGGTTT
131 TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTC
** * * * *
16336476 CGGTGATC-GGGGGGCCGGAGGGGCCGGAGGGGTGCGCACATGATGTTCGATGAGTGCTAGTACT
196 CGACGATCGGGGGGGCC-GA------GG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * * *
16336540 TGGCCCTTATATTTGCCCCCTATCCCTCGTCAAACCTCGAGAACCCACACCCCCTTAAAGAGCAT
253 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
* * *
16336605 TTGAGATTTTACAGGTTTGCTGCCAATAGCCAATAAAGTGTCTGAAATGGGGACAC-TTTTTCAA
318 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAA
* *
16336669 ATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAAT
383 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAAT
* *
16336734 ACAACGATCATGTCTACCAAGTTTGGGGCCAAAAA----TCC----------T------TCT---
448 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGA
*
16336776 ------AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
513 ACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * ***
16336835 GAAGGCTTAAGGGACCAGTATATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAT
578 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATAT
* *
16336900 GAAGATGTACCTAAATCCACCTACCACCCTATCGATCCATC-GCTTGCGCATCCCGTCTCTCTGG
643 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGGCTTGCGCATCCCGTCTCTCTGG
* *
16336964 CCGGTGTAGTGCCCGCCCGCCCGTCCGCCCGCTGGTTTCATCGGTTGGCTTAGGCATACGGAGTT
707 CCGGCGTAGTGCCCGCCCG--C--CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
* * ** * * *
16337029 CATTCCCAGTCTAAGAT-TGAACCAGACCGAGGGTTGGGGCAGCAGGATCGATAGCACACAGAAG
768 CATTCCCAGTCTAAGATCAG-ACCA-ACTGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGG
* * * * *
16337093 GGGATCCGATCGATCCCCGACTTACGC-ATCTGGCCCCTCTGGCCGGCTGAGCGCCCGCGCGCTC
831 GGGACCCGATCGATCCCCGGCTTGCGCAACCT-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
16337157 GT
895 GT
* *
16337159 TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGT
1 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-GAAGTTCATTCCCAGT
* * * * **
16337224 CTAAGATCGGACCAGACCGAAGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAAC
65 CTAAGATCAGA-CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* ** * * *
16337289 ATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCAGAGGCATTGCGGT
129 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGT
* *
16337354 TTCGACGATCGGGGGGGCCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
194 TCCGACGATCGGGGGGG-CC-GAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * *
16337419 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGGACTCACACCCCCTTAAAAAGCATTTGA
257 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
16337484 GATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
322 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGG
*
16337549 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
387 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAA
**
16337614 GGATCACGTCTACCAAGTTTGGAACCAAAAATCCTTCCGAAAAAATTTTAAAAAATC-CTGAACC
452 GGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTC-GAACC
* * *
16337678 GCAAAAAGTTTTAAAAATCGTGAAAAATAGACAACGAGTCGTCTTTCCATGAAACTTTACGTGAA
516 GCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *
16337743 GGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATT-GCATGCAGAAATATGAA
581 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAA
* * **
16337807 GATGTGCCTAAACCCACCTACCACCCTATCGTTCCACGGCTTGCGCATCCCGTCTCTCTAGCCAA
646 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* *
16337872 TGTAGTGCCCGCCCGCCCATCCGCCCGCTCGTTTCATCGGTTGGCCTAGGCATACGGAGTTCATT
711 CGTAGTGCCCGCCCG--C--CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
* * * *
16337937 CCCAGTCTAAGATCAAACCAGACTGAGGGTTGCGGCAGCAGGATCAGTAGCACGTAGAGGGGGAC
772 CCCAGTCTAAGATCAGACCA-ACTGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGGGAC
* * * * *
16338002 CCGATCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGT
836 CCGATCGATCCCCGGCTTGCGCAACCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
*
16338063 TTCGTGGGTTGACTTAGGCATACGGTGTTCATTCCCAG--T---C-T--AAG---A-T--C-G--
1 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGAAGTTCATTCCCAGTC
* * * * *
16338111 ---GA-CTG---GACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATTTGCTGGTGCCACAT
66 TAAGATCAGACAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* ** * * * * *
16338169 TTTTTTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAGATCCTGATCGGTGGCATTAGGGTTC
131 TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTC
* *
16338234 CGACGATC-GGGGGGCTCG-GGGGGGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCC
196 CGACGATCGGGGGGGC-CGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
**
16338297 TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT--CACTGCCTTAAAGAGCATTTGAGAT
260 TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
*
16338360 TTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCA
325 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCA
* * *
16338425 CAAAATCTTGTACAGTTCTAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGA
390 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * *
16338490 TCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAA
455 TCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAA
16338555 AAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
520 AAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
** *
16338620 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAGATATGAAGATG
585 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATG
** * *
16338685 TGCCTAAACCCACCTACCACCCTATCGATCCACGTTTTGCGCATCCCGTCTCTCTAGCCGACGTA
650 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* *
16338750 GT----GCCCGCCCGCCCGCTCGTTTCATCGGTTAGCTTAGGCATATGGAGTTCATTCCCAGTCT
715 GTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * ** * * *
16338811 AAGATCAGACCGGACCGAGGGTTGC-GACAGTTGGATAGGCAGCACGTAGAGGGGGACCCGATCG
780 AAGATCAGACC-AACTGAGGGTTGCAG-CAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCG
* * * * *
16338875 ATCCCCAGCTTGCGTATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTCGT
843 ATCCCCGGCTTGCGCAACCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* * *
16338929 TTCGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGT
1 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-GAAGTTCATTCCCAGT
* *
16338994 CTAAGATC-GAACCAGACCGATGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA
65 CTAAGATCAG-A-CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-
* *
16339058 G-ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACTTGATCGGCGGCATTGGG
127 GCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGG
** * *
16339122 GTTCCGACGATATGGGGGGCC-AGGGGGTGTGCGTACATGATGTGCAATGGGTGCTGGTACTTGG
192 GTTCCGACGATCGGGGGGGCCGA-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
16339186 CCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCATTAAAGAGCATTTG
256 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTG
* * * * *
16339250 AGATTTTATAGGTTTGCGGCCAGTAGGCGTTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAAG
321 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
* * *
16339315 GCCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAA-GTTTTTTGTGCATGCCGACAAAAATAC
386 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATG-TTTTTGTGCATGCCAACAAAAATAC
* *
16339379 AAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAAT-TCCAAA
450 AAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCT-CGAA
* * * * *
16339443 CCGCAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTT
514 CCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
16339508 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATATG
579 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATG
* ** * *
16339573 AAGATGTGCCAAAACCCACCTACCACTTTATTGATCCACGGCTTACGCATCCCGTCTCTCTGGCC
644 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * *
16339638 GGTGTAGTGCTCGCCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCC
709 GGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * ** * * * * *
16339703 TAGTCTAAGATCAGACTAAACTGAGGGTTGTGGTAGTAAGATCGGTAGCACGTAGAGGGAGACCC
774 CAGTCTAAGATCAGAC-CAACTGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGGGACCC
* * * * * *
16339768 GACCGATCCCCGGCTTGCGC-ATCTCGCCCCTCCGGCTGACTGAGCGCCCGCACGCTCAT
838 GATCGATCCCCGGCTTGCGCAACCT-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
16339827 TTCGTGGGTTGACTTAGGCATA
1 TTCGTGGGTTGACTTAGGCATA
16339849 TCTTAATTTG
Statistics
Matches: 4653, Mismatches: 508, Indels: 336
0.85 0.09 0.06
Matches are distributed among these distances:
840 1 0.00
841 257 0.06
842 1 0.00
844 5 0.00
845 1 0.00
847 1 0.00
850 4 0.00
851 2 0.00
853 91 0.02
854 5 0.00
855 2 0.00
857 1 0.00
858 1 0.00
859 1 0.00
861 7 0.00
862 48 0.01
863 60 0.01
864 1 0.00
865 2 0.00
866 188 0.04
867 4 0.00
868 84 0.02
869 144 0.03
870 6 0.00
871 18 0.00
872 1 0.00
873 308 0.07
874 83 0.02
875 230 0.05
876 106 0.02
877 8 0.00
878 111 0.02
879 63 0.01
880 46 0.01
881 6 0.00
882 7 0.00
883 3 0.00
884 1 0.00
886 1 0.00
887 11 0.00
888 26 0.01
889 62 0.01
890 3 0.00
891 2 0.00
892 143 0.03
893 57 0.01
894 379 0.08
895 97 0.02
896 665 0.14
897 21 0.00
898 188 0.04
899 35 0.01
900 341 0.07
901 299 0.06
902 34 0.01
903 2 0.00
904 276 0.06
905 103 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGAAGTTCATTCCCAGTC
TAAGATCAGACAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTC
CGACGATCGGGGGGGCCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAC
AAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGAT
CACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAA
AAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
TGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
AGATCAGACCAACTGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATC
CCCGGCTTGCGCAACCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
Found at i:16338975 original size:26 final size:26
Alignment explanation
Indices: 16338946--16338998 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16338936 GTTGACTTAG
*
16338946 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16338972 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16338998 G
1 G
16338999 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16339407 original size:894 final size:895
Alignment explanation
Indices: 16338080--16339848 Score: 2670
Period size: 894 Copynumber: 2.0 Consensus size: 895
16338070 GTTGACTTAG
* * **
16338080 GCATACGGTGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTGCGGTAGCACATGCTGGG
* * **
16338145 CTCGGGCATTTGCTGGTGCCACATTTTTTTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCAGAGA
* * *
16338210 TCCTGATCGGTGGCATTAGGGTTCCGACGATCGGGGGGCTCGGGGGGGTGCGCACATGATGTGCG
131 ACCTGATCGGCGGCATTAGGGTTCCGACGATCGGGGGGCTCGGGGGGGTGCGCACATGATGTGCA
**
16338275 ATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACTG
196 ATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACCC
*
16338340 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAATGGGG
261 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAGCTATTAAAGTGTCTAAAATGGGG
* * * *
16338405 ACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCTAGTTTTTAGCTGAATGTTTTTGTGCA
326 ACACTTTTTTCAAAAGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCA
* * *
16338470 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTT
391 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTT
* * * * *
16338535 TAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
456 TAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCA
16338600 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
521 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * ** *
16338665 CACATAGAGATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGTTTTGCGCATC
586 CACATAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATC
*
16338730 CCGTCTCTCTAGCCGACGTA-G-T-GCCCGCCCGCCCGCTCGTTTCATCGGTTAGCTTAGGCATA
651 CCGTCTCTCTAGCCGACGTAGGCTCGCCCGCCCGCCCACTCGTTTCATCGGTTAGCTTAGGCATA
** ** **
16338792 TGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTTGGATAGGCAGCACG
716 CAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGTAAGATAGGCAGCACG
* * * * *
16338857 TAGAGGGGGACCCGATCGATCCCCAGCTTGCGTATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
781 TAGAGGGAGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCCGGCCGACTGAGCGCCCGCA
* *
16338922 TGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAA
846 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAA
* * *
16338972 GCATACGGAGTTCATTCCTAGTCTAAGATCGAACCAGACCGATGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTGCGGTAGCACATGCTGGG
* *
16339037 CTCGGGCATGTGCTGGTGCCAGATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCAGAGA
* * * * *
16339102 ACTTGATCGGCGGCATTGGGGTTCCGACGATATGGGGGGC-CAGGGGGTGTGCGTACATGATGTG
131 ACCTGATCGGCGGCATTAGGGTTCCGACGAT-CGGGGGGCTC-GGGGGGGTGCGCACATGATGTG
*
16339166 CAATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCAC
194 CAATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
16339230 ACCCCATTAAAGAGCATTTGAGATTTTATAGGTTTGCGGCCAGTAGGC-GTTAAAGTGTCTAAAA
259 -CCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGTA-GCTATTAAAGTGTCTAAAA
*
16339294 TGGGGACACTTTTTTCAAAAGGCCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAA-GTTTTT
321 TGGGGACACTTTTTTCAAAAGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATG-TTTT
* *
16339358 TGTGCATGCCGACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
385 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
* *
16339423 AAATTTTAAAAAATTCCAAACCGCAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
450 AAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
*
16339488 TTGCCATGAAACTTCACGTTAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** *
16339553 CATTGGCACGTAAAAATATGAAGATGTGCCAAAACCCACCTACCACTTTATTGATCCACGGCTTA
580 CATTGGCACATAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTA
* ** *
16339618 CGCATCCCGTCTCTCTGGCCGGTGTAGTGCTCGCCCGCCCGCCCACTCGTTTCATCGGTTGGCTT
645 CGCATCCCGTCTCTCTAGCCGACGTAG-GCTCGCCCGCCCGCCCACTCGTTTCATCGGTTAGCTT
* * * * ** *
16339683 AGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACTAAACTGAGGGTTGTGGTAGTAAGATCGG
709 AGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGTAAGATAGG
* * * *
16339748 TAGCACGTAGAGGGAGACCCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCCGGCTGACTGAGC
774 CAGCACGTAGAGGGAGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCCGGCCGACTGAGC
16339813 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
839 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
16339849 TCTTAATTTG
Statistics
Matches: 783, Mismatches: 84, Indels: 14
0.89 0.10 0.02
Matches are distributed among these distances:
892 177 0.23
893 60 0.08
894 369 0.47
895 2 0.00
896 1 0.00
897 1 0.00
898 173 0.22
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (895 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTGCGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCAGAGA
ACCTGATCGGCGGCATTAGGGTTCCGACGATCGGGGGGCTCGGGGGGGTGCGCACATGATGTGCA
ATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAGCTATTAAAGTGTCTAAAATGGGG
ACACTTTTTTCAAAAGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCA
TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTT
TAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACATAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATC
CCGTCTCTCTAGCCGACGTAGGCTCGCCCGCCCGCCCACTCGTTTCATCGGTTAGCTTAGGCATA
CAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGTAAGATAGGCAGCACG
TAGAGGGAGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCCGGCCGACTGAGCGCCCGCA
CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAA
Found at i:16342127 original size:26 final size:26
Alignment explanation
Indices: 16342091--16342144 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
16342081 TGGGTTGACA
16342091 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
16342117 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
16342143 TA
1 TA
16342145 AGATTGAACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:16344743 original size:874 final size:874
Alignment explanation
Indices: 16341234--16345999 Score: 5508
Period size: 874 Copynumber: 5.4 Consensus size: 874
16341224 CAGTCTACAG
* ** * *
16341234 CATACGCAGTTCATTCCCAGTCTGAA-ATTGGACTGGACTGAGGGTTGCGGTAGCACATGCTGGG
1 CATACGGAGTTCATTCCCAGTCT-AAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
16341298 CTCGGGCATGTGCTGGTGTCGTATTTTTC-T--T-----CA-C--CG---GAGCATCACCAGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGCCGGAGA
* * *
16341349 ACCTAACCGACGGCACTGGGGTTCCGACGATCGGGGGGCTAGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCA-GGGGGTGTGCGCACATGATGTGC
** *
16341414 GATGGGTGCTAATACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
16341479 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTTTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
16341544 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGT
324 GGG-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
** *
16341609 GCATGTGAACAAAAATACAAGGATCACG-CTTACCAAGTTTAGGGCCAAAAATCCTTCCGAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTC-TACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* * **
16341673 ATTTTAAAAAATCTCGAACCGTAAAAAG-TTTCAAAATCGTGAAAAATAGAAAACGAGTTATCTT
452 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
16341737 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
16341802 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACGACCCTATCGATCCATGCCTTGTG
582 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
* * ** ** * *
16341867 CAT-CAGTCTCTCTGGTCGATGTAGTGCCCGCCCGTTCGCTCGC-CTACTCATTTCGTCGGTTGG
647 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTC-ACT-GTTTCGTCGGTTGG
* * * * * *
16341930 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTTCAACAGTAGGAT
710 CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTACAGCAGCAGGAT
* * *
16341995 CGACAGCAAGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTG
775 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
16342060 AGCGCCCGCACGCTCATTTTTTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAGG
840 AGCGCCCGCACGCTC---------GTT----T---CAT--GG-GTTGA----C--T-TAGA
* * * *
16342121 CATACGGAGTTCATTCCCAGTCTAAGATTGAACTAGACTGAGGGTTGCAGCAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * ** *
16342186 TCGGGTATGTGCTGGTGTCACATTTTTCTTCACCGAGGCACCATCACCGTGGCATCGCCGTAGCA
66 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT---CGT--CA-----G-AGCA
* * *
16342251 TCCCCGGAGAACCTGACCAACGGCATTAGGGTTCC-AGCGATCGGGGGGGCCAGGGGGGGTGTGC
120 TCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATC-GGGGGGCCA--GGGGGTGTGC
*
16342315 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCC
181 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
** *
16342380 TTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAA
246 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
16342445 AGTGTCTGAAATGGGCACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTTTGAGTTTTTAGC
311 AGTGTCTGAAATGGG-GCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * *
16342510 TGAATTTTTTTATGCACGCCAACAAAAATACAAGGGTCATGTTTACCAAGTTTGGGGCC-AAAAT
375 TGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT
* * * *
16342574 GCCTT-C-AAAAAATTTTTAAAAAATCCCGAACCGCAAATAGTTTCGAAAATCATGAAAAATAGA
440 -CCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGA
**
16342637 AAACGAGTCGTCTTGCCAAAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
503 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*** *
16342702 CCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCG
568 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* *
16342767 ATCC-TCGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----ACCCGCCCGCCCGCT--C-G
633 ATCCAT-GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCACTG
* * *
16342824 TTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATCGGATCAGACC--GGTTG
697 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGG--G
* * * * * * * *
16342887 TTACGGCAACAGGATTGGTAGCATGCAGAGGGGGA-CCTAGTCGATCCCCGGCTTGTGCATCCCG
760 TTACAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCG
* * * *
16342951 CCCCTCTGGCCGGCTGAACGTCTGTACGCTCGTTTCATGGGTTGACTTAGA
824 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGA
* *
16343002 CAGACGGAGTTCTTTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACC
1 CATACGGAGTTCATTCCCAG--T---C-T---AAG----------AT-T--G----GACCAGACC
* * *
16343067 GAGGGTTACGG-AGCACATGCTGGGCTCGGGCATGTGCTGGTACCACATTTTTCATCGTCGGGGC
40 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGC
* ** * * * * *
16343131 ACCAACGTTGGAGCATCGCCGGAGAACTTGACAGGCGGCATTCGGGTTCCGATGATCGGGGGGCT
105 ACCATCGTCAGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGC-
** *
16343196 GGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
169 CAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
16343261 CCTAATCGAACCACGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
234 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * * * *
16343326 AATAGCCATTAAAGTGTCTGAAATTGGGACATTTTTTTCAAATAGTCAGAAAATCTTGTACACTT
299 AGTAGCCATTAAAGTGTCTGAAA-TGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
16343391 TGAGTTTTTAGCTGAATGTTATTATGCATGCGAACAAAAATACAAGGATCACGTCTACCAAGTTT
363 CGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * *
16343456 GGGGACAAAACA-CCTT-CAAAACAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATC
428 GGGGCCAAAA-ATCCTTCCGAAA-AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATC
* * *
16343519 GTGAAAAATAGCAAACGAGTCGGCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
491 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
16343584 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
556 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * * *
16343649 ACAACCCAATCGATCCACGGCTTACGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCTCG
621 ACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * * * *
16343714 CCAGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACAGAGTTCATTACCAATCTAAGATCAGACC
686 CCCGCTCACT-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACC
* * * * * * *
16343779 AGACCAAGGGTTACGGTAGCAGGATCGGTAACACGTAGAGGGGGACCCGACCGATCCCAGGCTTA
750 AGACCAAGGGTTACAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * *
16343844 CGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCCCACGCTCGTTTCGTGGGTTGACTTAGA
815 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGA
*
16343904 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATACTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
*
16343969 TCGGGCATGTGCTGGTGCCACTTTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGCCGGAGAA
66 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGCCGGAGAA
* * * * *
16344034 CCTAACCGGCAGCATTGGGGTTCCGGCGATCGGGAGGGCCAGGGGGTGTGCGCACCA-GATGTGT
131 CCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCCAGGGGGTGTGCGCA-CATGATGTGC
*
16344098 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCAT-GAGAACTAAC
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCAC
* * *
16344162 ACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
16344227 GGGGCACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTTT
323 GGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
*
16344292 GCATGCCAACAAAAATA-AAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
* ** * * * * *
16344356 TTTAAAAAAATCCCGAACTATAAAAAGTTTTGAAAATCATGAAAAATAAAAAATGTGTCATCTTG
453 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * *
16344421 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTAGAAGCCAT-AAAATAGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
16344485 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
583 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
* *
16344550 ATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCTCACTTGTTTCGTCGGTCGGCT
648 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCAC-TGTTTCGTCGGTTGGCT
* * * *
16344615 TAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACCAGACCAAGGGTTGCAGTAGCAAGATCG
712 TAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTACAGCAGCAGGATCG
* ** * * * *
16344680 ACAGCATACAGAGGGGGACCCGGCCGATCCCCGGCTTGCACATCCCGGCCCTCTGGTCGGCTGAG
777 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
16344745 CACCCGCACGCTCGTTTCTTGGGTTGACTTAGG
842 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGA
* * ***
16344778 CATACGGAGTTCATTCCCAGTCTAAGATCGGGCCA-AAAAAGGGTTGCGGCAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * ** * * * *
16344842 TCGAGCATGTGTTGGTGCCACTTTTTTCTTCACCAGGGCACCATTGCCGGAGCATCGCCGGAGAA
66 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGCCGGAGAA
* * ** * *
16344907 CCTGACCGGCGGCATT-AGGTTTTGACGGTCGAGGGGGCCCGGTCGGGTGTGCGCACATGATGTG
131 CCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCAGG--GGGTGTGCGCACATGATGTG
* * *
16344971 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAGCCTCAAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
16345036 -CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
16345100 GGGGAGACTTTTTTCAAATGGACACAAAATCTTGTACACTTCAAGGTTTTAGCTGAATTTTTTTG
323 GGGG-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* * *
16345165 TGCATGCCAAAAAAAATACAAAGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
** ** *
16345230 ATTTTAAAAAATCCCGAACTATAAAAAGTTTCAAAAATCGTTAAAAATAGAAAACGAGTCGTCTT
452 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
**
16345295 GCCATGAAACTTCACGTGAAGGCTTAAGGGAAGATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * **
16345360 TTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTATG
582 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
* * * * * *
16345425 CATCCAGTCTCTTTGGCCGGCGTAGTGCCTGCTCGCCTGCCCGCTCA---TTTCATCGGTTGGCT
647 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCACTGTTTCGTCGGTTGGCT
* ** * * * *
16345487 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGCTTGCAGCAGTAGGATTG
712 TAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTACAGCAGCAGGATCG
* ** * * * *
16345552 GCAGCACGCAGAGGGGCACCCGATTGATCCTCTGCTTGTGCATCCCGCCCCTCTGGCCAGCTGAG
777 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
16345617 CACCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATA
842 CGCCCGCACGCTCGTTTCATGGGTTGACTTA-G---A
** * *
16345654 CGGAGATCTTTCCCAGTCTTAGCATATAGAGTTCATTCCCAGTCTAAGATTGGACTGGTCTGAGG
1 C----A----T---A--C---G------GAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGG
* * * * * * * *
16345719 GTTGCGGCAGCACATGCTAGGCTCGGGCATGTACTAGTGTCGCATTTTTCTTTGTTGTGGCACCA
44 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA
* ** * * *
16345784 TCGCCAGAGCATCATCGGAGAACCTGACCGACGGCATTTGGGTTCCG-CAGATCGGGGGGGCTGG
109 TCGTCAGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC-GATCGGGGGGCCAGG
* * * *
16345848 GGG-GTGCGCACTTGATGTACGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTA
173 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
16345912 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
238 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
16345977 GCCATTAAAGTGTCCGAAATGGG
303 GCCATTAAAGTGTCTGAAATGGG
16346000 TCAGACACTT
Statistics
Matches: 3339, Mismatches: 410, Indels: 250
0.83 0.10 0.06
Matches are distributed among these distances:
872 166 0.05
873 168 0.05
874 443 0.13
875 292 0.09
876 206 0.06
877 236 0.07
878 6 0.00
880 2 0.00
881 21 0.01
882 2 0.00
883 3 0.00
884 2 0.00
886 3 0.00
887 84 0.03
888 5 0.00
889 3 0.00
890 3 0.00
891 3 0.00
892 1 0.00
893 246 0.07
894 218 0.07
895 43 0.01
896 78 0.02
897 69 0.02
898 39 0.01
899 96 0.03
900 13 0.00
901 3 0.00
902 165 0.05
903 7 0.00
904 2 0.00
905 2 0.00
906 53 0.02
907 143 0.04
909 1 0.00
911 12 0.00
912 44 0.01
913 39 0.01
914 398 0.12
915 19 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (874 bp):
CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGCCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTT
TAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCACTGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTACAGCAGCAGGATCGGCAG
CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGACTTAGA
Found at i:16347731 original size:26 final size:26
Alignment explanation
Indices: 16347702--16347754 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16347692 CCGGTCCAAT
*
16347702 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
16347728 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
16347754 C
1 C
16347755 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16348187 original size:881 final size:886
Alignment explanation
Indices: 16346399--16349566 Score: 3973
Period size: 892 Copynumber: 3.6 Consensus size: 886
16346389 CTGCGGTTTG
* * *
16346399 GGATTTTTTAAACTTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATT
1 GGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
*
16346464 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG
66 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
*
16346529 AAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
131 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * *
16346594 CTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATTAGGGATAGGGGGCCAATATAAGGGACAAGT
196 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
** * * * * *
16346659 ATGAGCACCCATCACAAATCATGAGCGTACACCCCCCGGCCCCCCGATCGCCAGAACCCCAATGC
261 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGC
* * * * * *
16346724 CGCCGATCAGGTTCTCCG-ACGATGCTCTGGCGATGGCACCCCAACAAAGAAAATTACGGCACCA
326 CGCCGGTCAGGTTCTCCGCGCGATG--AT-G-G-T-G--CCCCGACGAAGAAAAATACGGCACCA
* * *
16346788 GCACAGGCCCGAGCCCAGTATGTGCTGCTGCAA-CC-C--T-C-G----ATC-----C---G-AT
383 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAAT
* * * * * * *
16346834 ---C--CG-AT-CTTACACTGGGAATGAACTTCATATGCCTAAGTCAACCGATGAGATGAGCGTG
448 GAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * *
16346892 CGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGGG
513 CGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTG
* * * ** * * *
16346957 TGCTGCCGATCTTGCTACCGCAACCCTCGGTCCAATCCA-ATCTTAGGCTAGGAATGAACTTCGT
578 TGCTGCTGATCTTGCT-GCTCAACCCTCGGTCCGGT-CAGATCTTAGACTGGGAATGAACTCCGT
* * *
16347021 ATGCCTAAGCCAA-CAGACGAAAGGAGCGGACGGGCGGGCAGGCGGGCACTTCGTCGGCCAGAGA
641 ATGCCTAAGCCAATC-GACGAAACGAGC-GA--GGC--G--GGTGGGCACTACGTCGGCCAGAGA
* * * *
16347085 GACCGGATGCGCAAGCCGTGGATCGATAGCGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCT
698 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTT
*
16347150 GTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAG
763 GTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
*
16347215 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACA-GTTC
828 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA-AGGTTC
* * * ** *
16347274 GAGATTTTTTAAAA-TTTTTTCAAACTGATTTTTATCCCCAAACTTGGAAGACGTGATCCTTGTA
1 G-GATTTTTTAAAATTTTTTTGAAA-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
** * * *
16347338 TTTTTGTTGGTGTGCA-AAAAAAATTAAGCTAAAAACTGGAAGTGTACAAGATTTTGTGAACATT
64 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* *
16347402 TGAAAAAAGTGTCCCCATTTTAGACACCTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
129 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* * *
16347467 TGCTCTTTAAGGGGGTGTTAGTTTTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
194 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* *
16347532 GTACCAGCACACATCGCACATCATGTGCGCACACCCCCC-GCCCCCCGATGGCCGGAACCCCAAT
259 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAAT
**
16347596 GCCGCCGGTCAGGTTCT-C-CG-G-TGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACAT
324 GCCGCCGGTCAGGTTCTCCGCGCGATGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACAT
* *
16347657 GCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTC
389 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTT
* * * *
16347722 CATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTG
454 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* *
16347787 CTCAGCCGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTGTTGC
519 CTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGC
* * * ** * *
16347852 TAATCCTGGTGCTACAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTA
584 TGATCTTGCTGCT-CAACCCTCGGTCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * ** ** * *
16347917 AGCCAATCGATGAAACGAGCGA-GTGGGTGGGCACTACACCGGTTAGAGATACGGGATGTGCAAG
648 AGCCAATCGACGAAACGAGCGAGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* *
16347981 CCGTGGATCGATAGGGTGGTTGGTGAGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCAT
713 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCAT
*
16348046 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATGGCAAGACG
778 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
*
16348111 ACTCGTTTTGTATTTTTCACGATTTTTGAAACTTTTTAAGGTTC
843 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTC
* * *
16348155 AGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGAGGTGATCCTTGTAT
1 -GGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * *
16348220 TTTTTTTGGCATGCACAAAACAATTCATCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
65 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* * *
16348285 GAAAAAAGTGTCCCTATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAAT
130 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* *
16348350 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTTATGAGGGATAGGGGGCCAATATAAGGGCAAAG
195 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * * * *
16348415 TACCAGAACCCA-C-CACCTATCTTGTGCGCACACCACCCGGCCCCCCGATTGTCGGAA-CCTAA
260 TACCAGCACCCATCGCA-C-ATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAA
* * *
16348477 TGCCGCCGGTCAAGTTCTCCGACGATGCTCCGATGATGGTGCCCTGACGAAGAAAAAT-TGGCAC
323 TGCCGCCGGTCAGGTTCTCCG-C---G---CGATGATGGTGCCCCGACGAAGAAAAATACGGCAC
* * * *
16348541 CAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAGTCCAATCTTAGATTGGGA
381 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGA
* * *
16348606 ATGAATTTCGTATGCTTAGTCTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
446 ATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * *
16348671 TACGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCAGGGATCGGCCAGGTCCCCTTCTA
511 TGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTG
* * *
16348736 TGTGGTGCTGATCTTGCTG-TCGTAACCTTCGGTCTGGTCAGATCTTAGACTGGGAATGAACTCC
576 TGTGCTGCTGATCTTGCTGCTC--AACCCTCGGTCCGGTCAGATCTTAGACTGGGAATGAACTCC
* *
16348800 GTATGCCTAAGCGAATCGACGAAACGAGCGAACGGACGGGTGGGCACTACGTCGGCCAAAGAGAC
639 GTATGCCTAAGCCAATCGACGAAACGAGCG-A-GG-CGGGTGGGCACTACGTCGGCCAGAGAGAC
* **
16348865 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTTT-CA
701 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTG
* *
16348929 TGCCAATTCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTCAA-CCTTCACGTGAAGTT
766 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT-AAGCCTTCACGTGAAGTT
* * ** ** *
16348993 TCATGGCATGACGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTGGGGTTTG
830 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGG-TTC
* *
16349051 GGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGGCCCAAA-TTGGTAGACGTGATCCTTGTACT
1 GGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-T
* * * * * *
16349115 TTTT-TTGGGATTCATAAAAAAATTCAGCTAAAAAATAGAATTGTACAAGATTTTGTGACCATTT
65 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* *
16349179 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAACAAACCTGTAAAATCTCAAAT
130 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
16349244 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
195 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* **
16349309 TACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCATCGGAACCCCAAT
260 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAAT
* * ** ** **
16349374 GCCGCCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCTTCGGTGAAGAAAAATGTGGCACC
324 GCCGCCGGTCAGGTTCTCC-GC---G---CGATGATGGTGCCCCGACGAAGAAAAATACGGCACC
* * * * * ** *
16349439 AGCACATGCCCGAGCCTAGCATATGCTGCTGCAACCCTTGGTCCGATCTGATCTTAGACTTGGAA
382 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAA
16349504 TGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
447 TGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
16349567 CGAGGATCGG
Statistics
Matches: 1992, Mismatches: 236, Indels: 108
0.85 0.10 0.05
Matches are distributed among these distances:
863 50 0.03
864 2 0.00
865 2 0.00
866 1 0.00
867 2 0.00
868 2 0.00
869 2 0.00
871 2 0.00
872 1 0.00
873 4 0.00
874 39 0.02
875 206 0.10
876 58 0.03
878 1 0.00
880 3 0.00
881 255 0.13
882 224 0.11
883 18 0.01
885 3 0.00
887 1 0.00
888 7 0.00
889 172 0.09
890 2 0.00
891 1 0.00
892 259 0.13
893 23 0.01
894 226 0.11
895 167 0.08
896 138 0.07
897 121 0.06
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (886 bp):
GGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGC
CGCCGGTCAGGTTCTCCGCGCGATGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGC
CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCG
TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
CAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCTG
ATCTTGCTGCTCAACCCTCGGTCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAATCGACGAAACGAGCGAGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTC
Found at i:16349529 original size:26 final size:26
Alignment explanation
Indices: 16349491--16349543 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16349481 CCGATCTGAT
* *
16349491 CTTAGACTTGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16349517 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16349543 C
1 C
16349544 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16350359 original size:26 final size:26
Alignment explanation
Indices: 16350323--16350375 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16350313 CTAGTCTGAT
16350323 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
16350349 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16350375 C
1 C
16350376 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16351914 original size:26 final size:26
Alignment explanation
Indices: 16351885--16351937 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16351875 CTGGTCCGAT
16351885 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16351911 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16351937 C
1 C
16351938 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16352825 original size:26 final size:26
Alignment explanation
Indices: 16352786--16352838 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16352776 CCGATCTGAT
* *
16352786 CTTAGACTGTGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16352812 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16352838 C
1 C
16352839 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16354388 original size:26 final size:26
Alignment explanation
Indices: 16354359--16354411 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16354349 CCGATCCGAT
*
16354359 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16354385 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16354411 C
1 C
16354412 ATAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16356019 original size:26 final size:26
Alignment explanation
Indices: 16355990--16356042 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16355980 CCGGTCCGAT
*
16355990 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16356016 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16356042 C
1 C
16356043 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16356528 original size:685 final size:685
Alignment explanation
Indices: 16355417--16356791 Score: 1900
Period size: 685 Copynumber: 2.0 Consensus size: 685
16355407 GCAAATCTTC
16355417 ATATTTCTGCATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
1 ATATTTCTGCATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * *
16355482 ACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGT
66 ACATGAAGTTTAACGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGT
** * * *
16355547 TCGGGATTTTTGAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
131 TCAAGATTTTTGAAAATTTTTTCGGAAGGAGCTTTGGCCCAAAACTTGGTAGACGTGATCATTGT
* * * *
16355612 ATTTTTATGGTATGCATAAAAAAATTTAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCATT
196 ATTTTTATGGCATGCATAAAAAAAGTCAGCTAAAAAATCAAAGTGTACAAGATTTGGTGACCATT
* * * *
16355677 TGAAAAAGGTGTCCCCATCCCAAACACTTTAATGGTTACTGGCAGCAAACCTTTAAAATCTCAAA
261 TGAAAAAAGTGTCCCCATCCCAAACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAA
* *
16355742 TGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
326 TGCTCTTTAAGGAGGTGTGACTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* *
16355807 GTAGCAGCACCCATAGCACATCATGTACGGACACCCCCCCGGCCCCTCCGATCGCCGGAACCCCA
391 GTAGCAGCACCCATAGCAAATCATGTACGGACA---CCCCGGCCCC-CCAATCGCCGGAACCCCA
* * *
16355872 ATGCCGTCGGTCAAGTTCTCCGACGATGCTCC-A-G-T-GATGGTGTCCCGGCGAAGAAAAATAC
452 ATGCCGCCGGTCAAGTTCTCCGACGATGCTCCGACGATCGATGGTGCCCCGACGAAGAAAAATAC
* * * * *
16355933 GGCA-CAGCATATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGAC
517 GGCACCAGCACATGCCCGAGCCCAGCATCTGCTACCACAACCCTCAGTCCGGTCCGATCTAAGAC
* * *
16355997 TGGGAATGAATTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
582 TGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATACCTAAGTCAACCCACGAAAC
* * * *
16356062 GAGTGTACGGGCGCTCAACCGGCCAGAGGGGCGGGATTT
647 AAGCGTACAGGCGCTCAACCGACCAGAGGGGCGGGATTT
* *
16356101 ATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
1 ATATTTCTGCATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * *** * *
16356166 ACATGAAGTTTCACGGCAAGACGACTCGTTTTTTATTTTTTGTGATTTTCGAAGCTTTTTACGGT
66 ACATGAAGTTTAACGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGT
*
16356231 TCAAGATTTTTTAAAATTTTTTCGGAAGGAGCTTTGGCCCAAAACTTGGTAGACGTGATCATTGT
131 TCAAGATTTTTGAAAATTTTTTCGGAAGGAGCTTTGGCCCAAAACTTGGTAGACGTGATCATTGT
* * *
16356296 ATTTTTGTTGGCATGCATAAAAAAAGTCAGCTAAAAACTCTAAGTGTACAAGATTTGGTGACCAT
196 ATTTTT-ATGGCATGCATAAAAAAAGTCAGCTAAAAAATCAAAGTGTACAAGATTTGGTGACCAT
* ** * *
16356361 TTGAAAAAAGTGTCCGCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAATATCTCAA
260 TTGAAAAAAGTGTCCCCATCCCAAACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAA
* *
16356426 ATGCTCTTTAAGGGGGTGTGACTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCA
325 ATGCTCTTTAAGGAGGTGTGACTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
** * * * * *
16356491 AGT-GCCAGCACCCATCA-CAAATCATGTGTGTACACCCCTGCCCCCTAATCGTCGGATCCCCAA
390 AGTAG-CAGCACCCAT-AGCAAATCATGTACGGACACCCCGGCCCCCCAATCGCCGGAACCCCAA
*
16356554 TGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGCCCCGACGATGGTGCCCCGACGAAGAA
453 TGCCGCCGGTCAAGTTCTCCGACGATGCTCCGACGAT-------CGATGGTGCCCCGACGAAGAA
** * ** * *
16356619 AAATGTGGCACCAGGACATGCCCGAGCCCAGCATCTGCTACCGTAACCCTCAGTCTGGTTCGATC
511 AAATACGGCACCAGCACATGCCCGAGCCCAGCATCTGCTACCACAACCCTCAGTCCGGTCCGATC
*
16356684 TAAGACTGGGAATGAACTCCGTATGCTTAGACTATGAATGAACTCCGTATACCTAAGTCAACCCA
576 TAAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATACCTAAGTCAACCCA
* * * *
16356749 CGAAACAAGCGTGCAGGCGCTCAGCTGACCAGATGGGCGGGAT
641 CGAAACAAGCGTACAGGCGCTCAACCGACCAGAGGGGCGGGAT
16356792 GCGCAAGACG
Statistics
Matches: 601, Mismatches: 75, Indels: 21
0.86 0.11 0.03
Matches are distributed among these distances:
681 44 0.07
682 10 0.02
683 1 0.00
684 185 0.31
685 194 0.32
686 1 0.00
692 26 0.04
693 140 0.23
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (685 bp):
ATATTTCTGCATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ACATGAAGTTTAACGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGT
TCAAGATTTTTGAAAATTTTTTCGGAAGGAGCTTTGGCCCAAAACTTGGTAGACGTGATCATTGT
ATTTTTATGGCATGCATAAAAAAAGTCAGCTAAAAAATCAAAGTGTACAAGATTTGGTGACCATT
TGAAAAAAGTGTCCCCATCCCAAACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAA
TGCTCTTTAAGGAGGTGTGACTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
GTAGCAGCACCCATAGCAAATCATGTACGGACACCCCGGCCCCCCAATCGCCGGAACCCCAATGC
CGCCGGTCAAGTTCTCCGACGATGCTCCGACGATCGATGGTGCCCCGACGAAGAAAAATACGGCA
CCAGCACATGCCCGAGCCCAGCATCTGCTACCACAACCCTCAGTCCGGTCCGATCTAAGACTGGG
AATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATACCTAAGTCAACCCACGAAACAAGC
GTACAGGCGCTCAACCGACCAGAGGGGCGGGATTT
Found at i:16356586 original size:11 final size:11
Alignment explanation
Indices: 16356570--16356602 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
16356560 CGGTCAGGTT
16356570 CTCCGACGATG
1 CTCCGACGATG
16356581 CTCCGACGATG
1 CTCCGACGATG
*
16356592 CCCCGACGATG
1 CTCCGACGATG
16356603 GTGCCCCGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.39, G:0.27, T:0.15
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:16357611 original size:26 final size:26
Alignment explanation
Indices: 16357582--16357634 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16357572 CTGGTCCGGT
16357582 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
16357608 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
16357634 C
1 C
16357635 CGAAGTAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:16358546 original size:26 final size:26
Alignment explanation
Indices: 16358494--16358546 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16358484 CCAATCCGAT
* *
16358494 CTTAGAGTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
*
16358520 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCACATG
16358546 C
1 C
16358547 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:16360266 original size:25 final size:26
Alignment explanation
Indices: 16360232--16360283 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16360222 CTGGTCTGAT
16360232 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16360257 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16360283 C
1 C
16360284 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16361183 original size:26 final size:26
Alignment explanation
Indices: 16361147--16361199 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16361137 CCGGTCCGAT
*
16361147 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16361173 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16361199 C
1 C
16361200 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16362227 original size:891 final size:889
Alignment explanation
Indices: 16359370--16363371 Score: 4739
Period size: 895 Copynumber: 4.4 Consensus size: 889
16359360 CCGGTCTGAT
* ** ** * *
16359370 CTTAGACTGGGAATGAACTCCATATAACTAAGTCAACCCACGAAGTGCGCGTACGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* ** *
16359435 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGGTGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAG-CAGGGATCGGCCGGGTCCCCCTCTGCGTGCT-GCCATCC
* * * * *
16359500 TGTTG-TCGCAACCATCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCCTCAGCCA
129 TGCTGCT-GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
16359564 ACTGACGAAACGAGCGGGCGGGCGGGCACTACGTTGGCCAGAGAGACGGGATGTGCAAGCCGTGG
193 ACCGACGAAACGA---GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * * *
16359629 ATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
255 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCATCATATTTCTACGTGCCAATGCCATTTTTAT
* * * *
16359694 GGCTTGTAAATTCACACACTGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAGGACGACTCGT
320 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
*
16359759 TTTCTATTTTTCACGATTTTTGAAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTCGGAA
385 TTTCTATTTTTCACGATTTTTG-AAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAA
* ** *
16359823 GGTGTTTTATTCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
448 GGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* *
16359888 CAGCTAAAAATTTGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACA
513 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * * *
16359952 ATTTAATTGCTACTGGCAGCACACCTGTAAAATCTAAAATGCTCTTTACGGGGGTGTGAGTTCTC
578 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAGAATGCTCTTTACAGGGGTGTGAGTTCTC
* * *
16360017 GAGGTTTGATGAGAGATA-AGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
643 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
16360081 GCGCACA----CC--ACCT-CCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGACGAT
708 GCGCACACCCCCCGGCCCTCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAT
* * ** * * * *
16360139 GCTCCGGCGATGGTGCCTCGACGAAGAAAAAATGTGGCACCGATACA-ACTTCGAGCCCAGCATG
773 GCTCCAGCGATGGTGCCCCGACGAAG-AAAAATACGGCACCAACACATGC-CCGAGCCCAGCATG
* * * * *
16360203 TGCTGCCGTAA-CCTTCCGTCTGGTCTGATCTTAGACTGGAATGAACTCCGTATG
836 TGCTACCGCAACCCTT-GGTCCGGTCTGATCTTAGACTGGAATGAACTCCATATG
* * * ** *
16360257 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTGCAGGCATTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * ** * * * * *
16360322 CAGCCCGAGGGATGAGATGCGCAAGCCGAGGATCGGCCGGGTTCCCCTCTGCGTGTTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCAG-GGATCGGCCGGGTCCCCCTCTGCGTGCTG-CCATCC
* * * ** *
16360387 TGCTGCCGCAACCTTCTGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAA
129 TGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
16360452 CTGACAAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGACGGCCAGAGAGACTGGATGCGCAA
194 CCGACGAAACGA-----------GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * **
16360517 GCCGTGGATCGATAAGGTGATAGGTGGGTTTAGGCACATC-TCCATATTTCTGTGTGCCAATGCC
248 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCAT-CATATTTCTACGTGCCAATGCC
*
16360581 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTTAAGCTTTCACGTGAA-TTATCATGGCAA
312 ATTTTTATGGCTTGTAAATTCATACAATGGT-CCCTTAAGCCTTCACGTGAAGTT-TCATGGCAA
* * *
16360645 GATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTT
375 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTT
* * *
16360710 TTTCGGAAGTAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
440 TTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
16360775 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGAGTCCCCAT
505 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
16360840 TTTAGACACTTTAATAGCTACTGGCAGCAAACTTGTAAAATCT-GAAATGCTCTTTA-AGGGGGT
570 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAG-AATGCTCTTTACA-GGGGT
* * *
16360903 GTGAGTTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAGGGGCCAAGTACCAGCACCAATCG
633 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* *
16360968 CACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGT
698 CACATCATGTGCGCACA-CCCCCCGGCCCTCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGG-
* *
16361033 TCTTTGGCGATGCTCCGATGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAAC
761 ----T-----T-CTCCGACGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAAC
** ** * *
16361098 ACATGCCCGA-CCCTAGCAAATGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATG
816 ACATGCCCGAGCCC-AGCATGTGCTACCGCAACCCTTGGTCCGGTCTGATCTTAGACT-GGAATG
* *
16361162 AACTTCGTATG
879 AACTCCATATG
* * * *
16361173 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * *
16361238 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGAGTCCCCCTCTGCGTGGTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCAG-GGATCGGCCGGGTCCCCCTCTGCGTGCTGCC-ATCC
* * *
16361303 TGCTGCTGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAA
129 TGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
16361368 CCGATGAAACGA-GCGAGCGGGAACTACGTCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCG
194 CCGACGAAACGAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
16361432 ATAGGGTGGTAGGTGGGTTTAGGCACATCATCATATTTCTACGTGCCAATGCCATTTTTATGGCT
259 ATAGGGTGGTAGGTGGGTTTAGGCACATCATCATATTTCTACGTGCCAATGCCATTTTTATGGCT
* * *
16361497 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAGGGCGACTCGTTTTC
324 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
*
16361562 TATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGAGATTTTTT-AAATTTTTTCGGAAGGAGTT
389 TATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTT
*
16361626 TTAGCCCCAAACTTGGTAGACGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTCAGCTA
454 TTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * *
16361691 AAAACTCAAAGTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAA
519 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
16361756 TGGCTACTGGCAGCAAACCTATAAAATCTAGAATGCTCTTTA-AGGGGTGCGAGTTCTCGAAGTT
584 TGGCTACTGGCAGCAAACCTGTAAAATCTAGAATGCTCTTTACAGGGGTGTGAGTTCTCGAGGTT
* **
16361820 TGCTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCATACATCATGTGCGCAC
649 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * ** *
16361885 AGCCCCCCCGGCCCTCCCAATCACCGGAACCCTAACACTGTCGGTCAGGTTCTCCGACGATGCTC
714 A--CCCCCCGGCCCTCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC
* ** * * * *
16361950 TAGCGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCTAGTCCAACATGTGCTAC
777 CAGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTAC
*
16362015 CGCAACCCTTGGTCCGGTCTGATCTTAGACTCGCAATGAACTCCATATG
842 CGCAACCCTTGGTCCGGTCTGATCTTAGACT-GGAATGAACTCCATATG
* *
16362064 CTTAGACTGGGAATGAACTTCGTATGCCTATGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * *
16362129 CGACCAGAGGGGCGGGATGCACAAGTCAGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCATTCT
66 CGGCCAGAGGGGCGGGATGCGCAAG-CAGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCA-TCC
** * * *
16362194 TGCTGCTATAACCCTCAGTCAGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAA
129 TGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
16362259 CCGACGAAATGAGTGGGTGGGCGGGCACTACG-CTGACCAGAGAGATGGGATGCGCAAGCCGTGG
194 CCGACGAAACGA---GGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * * *
16362323 ATCGATAGCGTGGTAAGTGGGTTTAGGCACATCTTCATAATTCTGA-GTGCCCAATGCCATTTTT
255 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCATCATATTTCT-ACGTG-CCAATGCCATTTTT
* *
16362387 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTCCACGTGAAGTTTCATGGCAAGACGTCTC
318 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * ** * *
16362452 ATTTTCTATTTTTCATGATTTTCCAGAA-TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAA
383 GTTTTCTATTTTTCACGATTTTTGA-AACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGA
* * ** * * *
16362516 AGGAGTTTTGGCCCCAAACTTGGTAAACACGATCCTTGTATTTTTCTTTGCATGCAAAAAAAAAA
447 AGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC--ACAAAAAA
* * * *
16362581 ATTCAGCTAAAAACTGGAAGTGTACAAGATTTTATAACCGTTTGAAAAAAGTGTCCCCCATTTCA
510 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCCATTTCA
* **
16362646 GACACTTTAATGGCTACTGGCAG-AAA-CTGTAAAATCTCA-ACTGCTCTTTATGGGGGTGTGGA
574 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT-AGAATGCTCTTTACAGGGGTGT-GA
16362708 GTTCTCCGAGGTTTGATGAGGGATAGGGGGCCCAATATAAGGGCC-AGTACCAGCAACCCATCGC
637 GTTCT-CGAGGTTTGATGAGGGATAGGGGG-CCAATATAAGGGCCAAGTACCAGC-ACCCATCGC
* * * ** *
16362772 ACATCATGTGCGCACACACCCCGGCCC-CCCATTCCGCCGGAACCTCAAATGCCACCGATCAGGT
699 ACATCATGTGCGCACACCCCCCGGCCCTCCCAAT-CGCCGGAACC-CCAATGCCGTCGGTCAGGT
* *
16362836 TC-CTCTACGATGCTCC-GAC-ATGGTGCCCCTGACGAAGAAAAA-ATGTGACACCTAACACATG
762 TCTC-CGACGATGCTCCAG-CGATGGTGCCCC-GACGAAGAAAAATACG-G-CACC-AACACATG
* * * *
16362897 CCCGAGCCCCATCATGTGCTACCGCAAACCCTCAAGGTTCAGTCTGA--TTA-ACTGG---G-A-
821 CCCGAG-CCCAGCATGTGCTACCGC-AACCCT--TGGTCCGGTCTGATCTTAGACTGGAATGAAC
16362954 -CCATAATG
882 TCCAT-ATG
* * *
16362962 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGA-AGGCACTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT-ACGGGCGCTCAG
* ** * * * *
16363026 CCGGCTAGAGGGGTAGGATGCGCAAGCCAAGGATCGGCCAGGTCCCCTTCTGCGTGTTGCCAATC
65 CCGGCCAGAGGGGCGGGATGCGCAAG-CAGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCC-ATC
* * * *
16363091 C-GCTG-TCGCAACCCTCGGTCCGGTTTAATCTTAGACTGAGAATGAACTTCGTATGCCTAAGCC
128 CTGCTGCT-GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
16363154 AACCGATGAAACAAGCGGACGGGCGGGCGGGCAGGCACTATGCCGACTAGAGAGACAGGATGCGC
192 AACCGACG--A-AA-C-GA--GGCGGGC--G--GGCACTACGTCGGCCAGAGAGACGGGATGCGC
* *
16363219 AAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT-ATTCATATTTCTATGTGCCAATG
246 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCA-TCATATTTCTACGTGCCAATG
* * * *
16363283 ACATTTTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCATGAAGTTTCATGGCAA
310 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
16363348 GACGACTCGTTTTCTATTTTTCAC
375 GACGACTCGTTTTCTATTTTTCAC
16363372 AAAAATTCAG
Statistics
Matches: 2700, Mismatches: 319, Indels: 175
0.85 0.10 0.05
Matches are distributed among these distances:
886 3 0.00
887 166 0.06
890 1 0.00
891 288 0.11
892 5 0.00
894 2 0.00
895 347 0.13
896 268 0.10
897 174 0.06
898 133 0.05
899 75 0.03
900 75 0.03
901 153 0.06
902 264 0.10
903 94 0.03
904 236 0.09
905 117 0.04
906 1 0.00
907 10 0.00
910 1 0.00
914 3 0.00
915 53 0.02
916 231 0.09
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCAGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCATCCTG
CTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCATCATATTTCTACGTGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
AGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTAGAATGCTCTTTACAGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
CCCCCGGCCCTCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCAGC
GATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCA
ACCCTTGGTCCGGTCTGATCTTAGACTGGAATGAACTCCATATG
Found at i:16363774 original size:26 final size:26
Alignment explanation
Indices: 16363735--16363787 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16363725 CCGGTTCGAT
16363735 CTTAGACTGCGAATGAACTCCATATG
1 CTTAGACTGCGAATGAACTCCATATG
* * *
16363761 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCATATG
16363787 C
1 C
16363788 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCATATG
Found at i:16364105 original size:793 final size:791
Alignment explanation
Indices: 16362577--16364163 Score: 1993
Period size: 793 Copynumber: 2.0 Consensus size: 791
16362567 ATGCAAAAAA
* * * *
16362577 AAAAATTCAGCTAAAAACTGGAAGTGTACAAGATTTTATAACCGTTTGAAAAAAGTGTCCCCCAT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCCAT
* * * *
16362642 TTCAGACACTTTAATGGCTACTGGCAG-AAA-CTGTAAAATCTCAACTGCTCTTTATGGGGGTGT
65 TTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGT
* *
16362705 GGAGTTCTCCGAGGTTTGATGAGGGATAGGGGGCCCAATATAAGGGCC-AGTACCAGCAACCCAT
130 -GAGTTCT-TGAAGTTTGATGAGGGATAGGGGG-CCAATATAAGGGCCAAGTACCAGC-ACCCAT
* * * * *
16362769 CGCACATCATGTGCGCACACA--CCCCGG-CCCCCC-ATTCCGCCGGAACCTCAAATGCCACCGA
191 CGCACATCATGTGCGCACACACCCCCCGGCCCCCCCGA-T-CGTCGGAACC-CCAATGCCGCTGG
* * * * *
16362830 TCAGGTTC-CTCTACGATGCTCCGAC-ATGGTGCCCCTGACGAAGAAAAAATGTGACACCTAACA
253 TCAGGTTCTC-CGACGATGCTCCGGCAATGGTGCCCC-GATGAAG-AAAAATGCGACACC-AACG
* * ** * * *
16362893 CATGCCCGAGCCCCATCATGTGCTACCGCAAACCCTCAAGGTTCAG-TCTGA--TTA-ACTG-G-
314 CATGCCTGAG-CCCAGCATGTGCTGTCG-TAACCCTC--GGTCCGGTTC-GATCTTAGACTGCGA
*
16362952 --G-A--CCATAATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGC
374 ATGAACTCCAT-ATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGC
* * * * * * * *
16363012 GTGAAGGCACTCAGCCGGCTAGAGGGGTAGGATGCGCAAGCCAAGGATCGG-CCAGGTCCCCTTC
438 GTGAGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGTCAGGGATCGGTCGA-GTCCCCCTC
* * * * * *
16363076 TGCGTGTTGCCAATCC-GCTG-TCGCAACCCTCGGTCCGGTTTAATCTTAGACTGAGAATGAACT
502 TACGTGCTGCCAATCCTGCTGCT-GCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACT
* * * * * *
16363139 TCGTATGCCTAAGCCAACCGATGAAACAAGCGGACGGGCGGGCGGGCAGGCACTATGCCGACTAG
566 CCGTATGCCTAAGCCAACCGACG--A-AA-C-GA--GGCGGGTGGGCGGGCACTACGCTGACTAG
*
16363204 AGAGAC-AGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATAT
624 AGAGACGA-GATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* *
16363268 TTCTATGTGCCAATGACATTTTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCAT
688 TTCTATGTGCCAATGCCATTTTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGT
16363333 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
753 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
*
16363372 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
16363437 TCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTG
66 TCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTG
16363502 AGTTCTTGAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
131 AGTTCTTGAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*
16363567 ATCATGTGCGCACACCACCCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGCTGGTCAGGT
196 ATCATGTGCGCACA-CA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGT
*
16363632 TCTCCGACGATGCTCCGGCAATGGTGCCCCGATGAAGAAAAATGCGGCACCAACGCATGCCTGAG
259 TCTCCGACGATGCTCCGGCAATGGTGCCCCGATGAAGAAAAATGCGACACCAACGCATGCCTGAG
16363697 CCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTTCGATCTTAGACTGCGAATGAACTCCATATGC
324 CCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTTCGATCTTAGACTGCGAATGAACTCCATATGC
* * * *
16363762 TTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGTC
389 TTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGAGGGCGCTCAGCC
* * ** * *
16363827 GACCAGAAGGGTGGGATGCGCAAGTCAGGGATCGGTCGAGTCCCCCTCTGTGTGCTACCATTCCT
454 GGCCAGAGGGGTGGGATGCGCAAGTCAGGGATCGGTCGAGTCCCCCTCTACGTGCTGCCAATCCT
** * *
16363892 GCTGCTATAACCCTCAGTCAGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAAC
519 GCTGCTGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
16363957 CGACGAAACGA-GTGGGTGGGCGGGCACTACGCTGACCAGAGAGACGAGATGCGCAAGTCATGGA
584 CGACGAAACGAGGCGGGTGGGCGGGCACTACGCTGACTAGAGAGACGAGATGCGCAAGTCGTGGA
* * * *
16364021 TTGATAGCGTGGTAGGTGGGTTTAGGCACATCTTCATAATTCTGCATG-CCCAATGCCATTTTTA
649 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT--ATGTGCCAATGCCATTTTTA
* * * *
16364085 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGTCTCA
712 CGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACTCG
16364150 TTTTCTATTTTTCA
777 TTTTCTATTTTTCA
16364164 TGATTTTCCA
Statistics
Matches: 687, Mismatches: 77, Indels: 58
0.84 0.09 0.07
Matches are distributed among these distances:
790 7 0.01
791 2 0.00
792 93 0.14
793 146 0.21
794 81 0.12
795 77 0.11
796 67 0.10
797 29 0.04
798 8 0.01
799 112 0.16
800 64 0.09
801 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.24
Consensus pattern (791 bp):
AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
TCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTG
AGTTCTTGAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
ATCATGTGCGCACACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTC
TCCGACGATGCTCCGGCAATGGTGCCCCGATGAAGAAAAATGCGACACCAACGCATGCCTGAGCC
CAGCATGTGCTGTCGTAACCCTCGGTCCGGTTCGATCTTAGACTGCGAATGAACTCCATATGCTT
AGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGAGGGCGCTCAGCCGG
CCAGAGGGGTGGGATGCGCAAGTCAGGGATCGGTCGAGTCCCCCTCTACGTGCTGCCAATCCTGC
TGCTGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ACGAAACGAGGCGGGTGGGCGGGCACTACGCTGACTAGAGAGACGAGATGCGCAAGTCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTACGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCAC
Found at i:16364668 original size:26 final size:26
Alignment explanation
Indices: 16364632--16364684 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16364622 TCAGTCTGAT
16364632 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16364658 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16364684 C
1 C
16364685 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16365465 original size:26 final size:26
Alignment explanation
Indices: 16365426--16365478 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16365416 CCGGTTTGAT
16365426 CTTAGACTGCGAATGAACTCCATATG
1 CTTAGACTGCGAATGAACTCCATATG
* * *
16365452 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCATATG
16365478 C
1 C
16365479 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCATATG
Found at i:16365932 original size:794 final size:782
Alignment explanation
Indices: 16364273--16366647 Score: 3097
Period size: 795 Copynumber: 3.0 Consensus size: 782
16364263 GCATGCAAAA
* *
16364273 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCGTTTGAAAAAAGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
16364338 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGTG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG--CTTTA-AGGGGTGTG
* * *
16364403 AGTTCTCGAGGCTTGATGAGGGATAGGGGGCCAATATAGGGGCGAAGTACCAGCACCCATCGCAC
128 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * * *
16364468 ATCATGTGCG-CACACCCCCCGGCCCCTCCGTTCGCCGAAACCCCAATGCCACCGATCAGGTTCT
193 ATCATGTGCGACACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCT
** * * * * * *
16364532 CTAACGATGCTCCGACGACGGTGCCCTGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCC
258 CCGACGATGCTCCGA-AATGGTGCCCCGATGAAGAAAAATGTGACACAAAC-CATGCCCGAGCCC
* * *
16364597 AGCATGTGCTACCGCAACCCTCAGTTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA
321 AGCATGTGCTATCG----CCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* *
16364662 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGAAGGCACTCAGCCGGC
382 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGAGGGCGCTCAGCCGGC
* * * ** * * * * * * *
16364727 TAGAGGGGTAGGATGCGCAAGCCAAGGATCGGCCAGGTCCCCCTCTACGTGTTGCCAATCCGCTG
447 CAGAGGGGTGGGATGCGCAAGTCGGGGATCAGTCGGGTCCCCCTCTACGTGCTGTCGATCTGCTG
* * * *
16364792 TCGCAACCCTCGGTCCGGTTTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
512 -CGCAACCCTCGATCCGGTCTGATCTTAGTCTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * *
16364857 GAAACGAACGGGCGGGAGGGCGGGCAGGCACTATGCCGGCTAGAGAGACAAGATGCGCAAGTCGT
576 GAAACG-ACGGGC-GGAGGGC-GGCGGGCACTACG-CGGCTAGAGAGACGAGATGCGCAAGCCGT
***
16364922 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGATGTTTTT
637 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTT
16364987 ACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACTC
702 ACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACTC
*
16365052 GTTTTTTATTTTTCAC
767 GTTTTCTATTTTTCAC
*
16365068 AAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
16365133 TCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTTTAAGAGGATGTGAG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTAAG-GGGTGTGAG
* *
16365198 TTCTTGAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
130 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
16365263 CATGTGCGCACACCACCCCCCCGGCCCACCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTT
195 CATGTGCG-ACA-CA-CCCCCCGGCCC-CCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTT
* * ** *
16365328 CTCCGATGATGCTCCGGTAATGGTGCCCCGATGAAGAAAAATGCAACACAAACGCATGCCTGAGC
256 CTCCGACGATGCTCC-GAAATGGTGCCCCGATGAAGAAAAATGTGACACAAAC-CATGCCCGAGC
* * * * *
16365393 CCAGCATGTGCTGTCGCCTCGGTCCGGTTTGATCTTAGACTGCGAATGAACTCCATATGCTTAGA
319 CCAGCATGTGCTATCGCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * * * *
16365458 TTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTCAGTCGACCA
384 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGAGGGCGCTCAGCCGGCCA
* *
16365523 GAGGGGTGGGATGCGCAAGTCGGGGATCAGTCGGGTCCCCCTCTACGTGCTGTTGGTCTTGCTGC
449 GAGGGGTGGGATGCGCAAGTCGGGGATCAGTCGGGTCCCCCTCTACGTGCTGTCGATC-TGCTGC
* *
16365588 AGCAACCCTCGATCCGGTCCGATCTTAGTCTGGGAATGAACTCCGTATGCTTAAGCCAACCGACG
513 -GCAACCCTCGATCCGGTCTGATCTTAGTCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * *
16365653 AAACGAGCGGGCGGACGGGCTGGCGGGCACTACGTCGGCTAGAGAGACGGGATGTGCAAGCCATG
577 AAACGA-CGGGCGGA-GGGC-GGCGGGCACTACG-CGGCTAGAGAGACGAGATGCGCAAGCCGTG
16365718 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTA
638 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTA
*
16365783 CGG-TGTGTAAA-TCATACGATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACTC
703 CGGCT-TGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACTC
* *
16365846 GTTTTCTATCTTTCAT
767 GTTTTCTATTTTTCAC
16365862 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
16365927 TCAGACACTTTAATGGCTACTGGCAGCAAACTTATAAAATTTCAAATGCTTTTTAAGGGGTGTGA
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC--TTTAAGGGGTGTGA
*
16365992 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACA
129 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
16366057 TCATGTGCGTACA-ACCCCCCGACCCCCCCGATCATC-GAACCCCAATACCG-TCGGTCAGGTTC
194 TCATGTGCG-ACACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCT-GGTCAGGTTC
* * ** *
16366119 TCCGACGATGGTCC-AACATGATGCGTCGATGAAGAAAAATGTGGCACCAGAA-CATGCCCGAGC
257 TCCGACGATGCTCCGAA-ATGGTGCCCCGATGAAGAAAAATGTGACA-CA-AACCATGCCCGAGC
* * * * * *
16366182 CCGGCATGTGCTATTGCAACCCTCTGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCT
319 CCAGCATGTGCTA-T-C--GCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
16366247 TAGACTGGGAATGGACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGTTCAGCCG
380 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGAGGGCGCTCAGCCG
* * * * * *
16366312 GCCAGAAGGGCGGGATGTGCAAGTCGGGGATCAATCGGGTCCCCCTCTATGTGCTATCGATCCTG
445 GCCAGAGGGGTGGGATGCGCAAGTCGGGGATCAGTCGGGTCCCCCTCTACGTGCTGTCGAT-CTG
* * * *
16366377 CTACCGCAACCCT-TAGTCCAGTCTGATCTTAGAT-TGGGAATGAACTCCGTATGCCTAAGACAA
509 CT-GCGCAACCCTCGA-TCCGGTCTGATCTTAG-TCTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
16366440 CCGACGAAACGA---GTGG-GTG-GGCGGGCACTACGCTGACCAGAGAGACGAGATGCGCAGGCC
571 CCGACGAAACGACGGGCGGAGGGCGGCGGGCACTACGC-GGCTAGAGAGACGAGATGCGCAAGCC
* *** *
16366500 GTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCAAATGCCATTT
635 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTT
* ** * *
16366565 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGTGTTCACGTGAAGTTTCGTGGCAAGACGAC
700 TTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGAC
16366630 TCGTTTTCTATTTTTCAC
765 TCGTTTTCTATTTTTCAC
16366648 GATTTTTGAA
Statistics
Matches: 1389, Mismatches: 162, Indels: 67
0.86 0.10 0.04
Matches are distributed among these distances:
784 1 0.00
785 104 0.07
786 62 0.04
787 2 0.00
788 1 0.00
789 48 0.03
790 38 0.03
791 13 0.01
792 12 0.01
793 294 0.21
794 326 0.23
795 375 0.27
796 8 0.01
797 11 0.01
798 93 0.07
799 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.24
Consensus pattern (782 bp):
AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTAAGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGACACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCG
ACGATGCTCCGAAATGGTGCCCCGATGAAGAAAAATGTGACACAAACCATGCCCGAGCCCAGCAT
GTGCTATCGCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGAGGGCGCTCAGCCGGCCAGAGGGGT
GGGATGCGCAAGTCGGGGATCAGTCGGGTCCCCCTCTACGTGCTGTCGATCTGCTGCGCAACCCT
CGATCCGGTCTGATCTTAGTCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGACGG
GCGGAGGGCGGCGGGCACTACGCGGCTAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTG
GTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTACGGCTTGTAAATT
CATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
AC
Found at i:16366248 original size:26 final size:26
Alignment explanation
Indices: 16366219--16366271 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16366209 CTGATCCGAT
16366219 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16366245 CTTAGACTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16366271 C
1 C
16366272 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16367684 original size:897 final size:896
Alignment explanation
Indices: 16365862--16369475 Score: 4473
Period size: 897 Copynumber: 4.0 Consensus size: 896
16365852 TATCTTTCAT
16365862 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
16365927 TCAGACACTTTAATGGCTACTGGCAGCAAACTTATAAAATTTCAAATGCTTTTTAA-GGGGTGTG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
16365991 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCAC
131 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
16366056 ATCATGTGCGTACAACCCCCCGACCCCCCCGATCATC-GAACCCCAATACCGTCGGTCAGGTTCT
196 ATCATGTGCGCAC-ACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* ** * ** * *
16366120 CCGACGATGGTCCAAC-ATGATGCGTCGATGAAGAAAAATGTGGCACCAGAACATGCCCGAGCCC
260 CCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
* ** * **
16366184 GGCATGTGCTATTGCAACCCTCTGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
325 AGCATGTGCTATCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTATGTATGCTTA
* * * * *
16366249 GACTGGGAATGGACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGTTCAGCCGGC
390 GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGAC
* * * * ** * * ** *
16366314 CAGAAGGGCGGGATGTGCAAGTCGGGGATCAATCGGGTCCCCCTCTATGTGCTATCGATCCTGCT
455 CAGAGGGGCGAGATGCGCAAGCCGGGGATC-GCCCGGTCCCCCTCTACGTGCTGCCGATCCTACT
* * * * * *
16366379 ACCGCAACCCTTAGTC-CAGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGACAACCG
519 GCCGCAACCCTCAGTCTGA-TCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * * * * * *
16366443 ACGAAAC--GAGTGGGTGGGCGGGCACTACGCTGACCAGAGAGACGAGATGCGCAGGCCGTGGAT
583 ACAAAACAAGCGGGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAAGCGCAAGCCGTGGAT
* *
16366506 CAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCAAATGCCATTTTTATGG
648 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
** *
16366571 CTTGTAAATTCATACAATGGTCCCTTAAGTGTTCACGTGAAGTTTCGTGGCAAGACGACTCGTTT
713 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
** * * *
16366636 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGATGCAG
778 TCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAG
* *
16366701 TTATAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
843 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
16366755 AAAAATTCAGCTAAAAACTCGAAGTCTACAAGATGTTGTGACCAATTGAAAAAAGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
16366820 TCAGACACTTTAATGGCTACTAGCAGCAAAGCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
16366885 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGACCAAGTACCAGCACCCATCGTAC
131 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*
16366950 ATCATGTGCG-ACACCCCCCGGGCCCTCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
196 ATCATGTGCGCACACCCCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * * *
16367014 CCGGCGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGTCC
260 CCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
* *
16367079 AGCATGTGCTACCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAAATATGTATGCTTA
325 AGCATGTGCTATCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTATGTATGCTTA
* * * *
16367144 GACTAGAAATGAACTCC-TATGCCTAAGTCAAGCCACGAAATGAGCGTGCGGGCGCTCAGTCGAC
390 GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGAC
** * * * *
16367208 CAGAGGGGCGAGATGCGCAAGTTGGGGATCGGCCCTGTTCCCCTCTGCGTTCTGCCGATCCTACT
455 CAGAGGGGCGAGATGCGCAAGCCGGGGATC-GCCCGGTCCCCCTCTACGTGCTGCCGATCCTACT
* *
16367273 GCCGCAACCCTCGGTCTGATCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCATCCGA
519 GCCGCAACCCTCAGTCTGATCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGA
*
16367338 CAAAACAAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAAGCGCAAGCTGTGGA
584 CAAAACAAGCGGG--GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAAGCGCAAGCCGTGGA
* * *
16367403 TCTATAGGG-GGTAGGTGGGTTTAGGTACATCTTCATATTTCTCCATGCCAATGCCATTTTTATG
647 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
*
16367467 GCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
712 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* *
16367532 TTCTATTTTTCACCATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
777 TTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGA
* * *
16367597 TTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGTCATGCACAA
842 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
16367652 AAAAATTTAGCTAAAAAATCAAAGTGTACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
16367717 TCAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
16367782 AGTTCTTC-AGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCA
131 AGTTC-TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
16367846 CATCATGTGCG--CACCCCCCGGCCCCCCCGATTG-CGGAACCCTCAATGCCGCCGGTCAGGTTC
195 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCC-CAATGCCGTCGGTCAGGTTC
* * *
16367908 TCCGACGATTCTCCGGCGATGGTGCCCGGACGTAGAAAAATGTGGCACCAGCACATGCCCGAGCC
259 TCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC
* * *
16367973 CAGCATGTGCTGTCACAACCCTCGGTCT-AGTCCGATCTTAGACTGGGAATGAACT-TCGTAAGG
324 CAGCATGTGCTATCACAACCCTCGGTCTGA-TCCGATCTTAGACTGGGAATGAACTAT-GTATGC
* *
16368036 TTAGACTAGGAATGAACTCCGTACGCCTAAGTCAACCCACGAAATGAGCGTGCAGGTGCTCAGCC
387 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCC
* ** * * * ** *
16368101 GACCAGAGGGGCGGGATGATCAAGCCGGGTATCGATCGGGTCGACCTCTACGTGCTGTCGATCCT
452 GACCAGAGGGGCGAGATGCGCAAGCCGGGGATCG-CCCGGTCCCCCTCTACGTGCTGCCGATCCT
* * * *
16368166 ACTGCCGTAACCCTCCA-TCCGGTCTGATCTTAGACT-AGGAATGAACTCTGTATGCCTAAGCCA
516 ACTGCCGCAACCCT-CAGTCTGATCTGATCTTAGACTGA-GAATGAACTCCGTATGCCTAAGCCA
* ** ** ** * ***** *
16368229 ACCGACGAAATGAGCGGGCGGGCGGGCGGGCAGGC-ACATCTTCAATTTCTACGTGCCAATGCCA
579 ACCGACAAAACAAGC-GG-GGGCGGGCGGGCA--CTACGCCGGCCAGAGAGACG-G-GAA-G---
* * * *
16368293 TTTCTGCGTAAGCCGTGGATAGATTGGGTGGTAGATGGGTTTAGGCACATCTTTATATTTCTGCA
634 ---C-GC--AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
* * *
16368358 TGCCAATGCCATTTTTATGCCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAACTTT
693 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* ** * * *
16368423 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTGGCAGTTTGAGATTTTT
758 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTTGGGATTTTT
* * * * * *
16368488 TAAAATTTTTTCCGAAGGAGTTTTGGCCCCAAAATTGGTAAACATGATCCTTGTATCTTTGTGGG
823 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
16368553 CATGCACAA
888 CATGCACAA
*
16368562 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
16368626 TCAAACACTTTAATGGCTACTGGTAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGAG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
16368691 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCAC
131 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
16368756 ATCATGTGCGCACACCGCACCTCCCGGCCCCCCCGCTC-ACTGGAACCCCAATGCCG-CTAGTCA
196 ATCATGTGCGCACA---C-CC-CCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGTC-GGTCA
* ** * * * *
16368819 GGTTCTCAGGTGATGCTCCAGCGATGGTGCCCTGGCGAAGAAAATTGTGGCACCAGCACATGCCC
254 GGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCC
* * *
16368884 AAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTG----G----T---C----------C--TG-A
319 GAGCCCAGCATGTGCTATCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTATGTA
* * * * * *
16368925 T-CTTAGACTGGGAATGCACTCCGTATCCCTAAGTCAACCCACGAAATGAGCATGTAGGCACTCA
384 TGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCA
* * * * * * *
16368989 ACTGACCAGAGAGGCGAGATGCGCAAGCCGAGGATTTGCCGGGTCCCCCTCTGCGTGCTGCCGAT
449 GCCGACCAGAGGGGCGAGATGCGCAAGCCGGGGA-TCGCCCGGTCCCCCTCTACGTGCTGCCGAT
* * * ** * *
16369054 CCTGCTGCCACAACCCTCAGTCTGGTCCAATCTTAGACTGGGGATGAACTCCGTATGCCTAAGCC
513 CCTACTGCCGCAACCCTCAGTCTGATCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCC
** * * * * * * * *
16369119 AATAGACGAAAAGAA-C--GGGCGGGTGGGCACTATGCTGGCCAGAGAGACAGGATGTGCAAGTC
578 AACCGAC-AAAACAAGCGGGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAAGCGCAAGCC
* * **
16369181 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGTTATTT
642 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
16369246 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCTTGGCAAGACGAC
707 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * **
16369311 TCCTTTTCTATTTTTCACGATTTTCAAAACTTTCTGCGGTTTGGGATTTTTTAAAATTTTTTCAA
772 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGG
*
16369376 AAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAA
837 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
16369436 AACAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTG
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
16369476 GGCACACCCC
Statistics
Matches: 2361, Mismatches: 309, Indels: 121
0.85 0.11 0.04
Matches are distributed among these distances:
874 267 0.11
876 2 0.00
883 1 0.00
884 1 0.00
885 2 0.00
886 5 0.00
887 12 0.01
890 2 0.00
891 160 0.07
892 14 0.01
893 128 0.05
894 279 0.12
895 278 0.12
896 175 0.07
897 420 0.18
898 56 0.02
899 2 0.00
900 1 0.00
905 1 0.00
906 1 0.00
907 2 0.00
908 3 0.00
909 151 0.06
910 270 0.11
911 2 0.00
912 1 0.00
914 1 0.00
915 3 0.00
916 114 0.05
917 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
CGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
GCATGTGCTATCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTATGTATGCTTAG
ACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGACC
AGAGGGGCGAGATGCGCAAGCCGGGGATCGCCCGGTCCCCCTCTACGTGCTGCCGATCCTACTGC
CGCAACCCTCAGTCTGATCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACA
AAACAAGCGGGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAAGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCACGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
Found at i:16369659 original size:26 final size:26
Alignment explanation
Indices: 16369630--16369682 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16369620 CCAATCTGAT
*
16369630 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
*
16369656 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
16369682 C
1 C
16369683 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:16370568 original size:26 final size:26
Alignment explanation
Indices: 16370532--16370584 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16370522 CCAATCTGAT
* *
16370532 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
16370558 CTTAGATTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
16370584 C
1 C
16370585 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:16370858 original size:159 final size:159
Alignment explanation
Indices: 16370558--16370932 Score: 473
Period size: 159 Copynumber: 2.4 Consensus size: 159
16370548 ACTCCGTATG
* * *
16370558 CTTAGATTGGGAATGAACTACGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACAGGCACTCAGC
* * * * * *
16370623 CGGCCAGAGGGGCGGGATATACAAGCCAGGGATCGGTCGGGTGCCCCTCTACATGTTGCCGATCT
66 CGGCCAGAGGGGCGGGATACACAAGCCAGGGATCGGACGGGTCCCCCTCTACATGCTACCGATCC
* * *
16370688 TGCTGCCACAACCCTC-GGTCTGGTCTGAT
131 TGCTACCACAACCCTCAGTTC-AGTCTGAT
* * * **
16370717 CTTAGACTGGGATTGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACAGGCACTCAGC
* * * * *
16370782 CGGCCAGAGGGGTGGGATACGCAAGCCGGGGATCGGACGGGTCCCCCTCTGCGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATACACAAGCCAGGGATCGGACGGGTCCCCCTCTACATGCTACCGATCC
*
16370847 TGCTACTACAACCCTCAGTTCAGTCTGAT
131 TGCTACCACAACCCTCAGTTCAGTCTGAT
** * * * *
16370876 CTTAGACTGGGAATGAACTCTATATGCATAAGCCAACCGACGAAATGAGCGGACAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACAGG
16370933 GTGGTCGGGC
Statistics
Matches: 183, Mismatches: 32, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
159 180 0.98
160 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACAGGCACTCAGC
CGGCCAGAGGGGCGGGATACACAAGCCAGGGATCGGACGGGTCCCCCTCTACATGCTACCGATCC
TGCTACCACAACCCTCAGTTCAGTCTGAT
Found at i:16372337 original size:26 final size:26
Alignment explanation
Indices: 16372299--16372380 Score: 139
Period size: 26 Copynumber: 3.2 Consensus size: 26
16372289 CCGGTCCAAT
*
16372299 CTTAGA-TTGGGAATGAACTTCGTATG
1 CTTAGACTT-GGAATGAACTCCGTATG
16372325 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTTGGAATGAACTCCGTATG
16372351 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTTGGAATGAACTCCGTATG
16372377 CTTA
1 CTTA
16372381 AGTCAACTCA
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
26 52 0.96
27 2 0.04
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (26 bp):
CTTAGACTTGGAATGAACTCCGTATG
Found at i:16373250 original size:26 final size:26
Alignment explanation
Indices: 16373214--16373266 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16373204 CCAGTCCAAT
16373214 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16373240 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16373266 C
1 C
16373267 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16374148 original size:26 final size:26
Alignment explanation
Indices: 16374119--16374171 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16374109 CTGGTCCGAT
* *
16374119 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
16374145 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
16374171 C
1 C
16374172 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:16374679 original size:892 final size:896
Alignment explanation
Indices: 16371561--16375792 Score: 5600
Period size: 892 Copynumber: 4.7 Consensus size: 896
16371551 CCAGCATGTG
* ** * ** * *
16371561 CTGCCGCAACCCTCGGTCCGGTCTGATCTTCGACTAAGAATTAACTCCGTATTCCTAAGCCAACC
1 CTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* ** * * *
16371626 GACGAAACGAGCAGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACAAGATGCGCAGGCCATA
66 GACGAAAC-AGCA-GCAGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTG
**
16371691 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCCACGTGCCAATGCCATTTTTA
129 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA
* *
16371756 TGGCTTGCAAATTCATACAATTGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCG
194 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCG
**
16371821 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
259 TTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* *
16371886 GAGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTC
324 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * * *
16371951 AG-TTAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTCAAACAC
389 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
16372015 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTCTAAGGGGGTGTGAGTTCTCG
454 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
* *
16372080 AGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTG
519 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * * * *
16372145 CGCACA-CCCCCGG-CCCCCCGATTGTCAGAACCACAATGCCTTTGGTCAGGTTCTCCGGTGATG
584 CGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT-CTGCGATG
* * * * * * * * *
16372208 CTCCGGTGATGGTGCACCAACGAAGAAAAATACGGCACCACCACATGCCCAATCCCAGCATCTGT
648 CTCCGGCGATGGAGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* *
16372273 TGCCGTAACCCTCGGTCCGGTCCAATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTTGGAA
713 TGCCGCAA-CC-C--T-CGG-----TC------T-GG--T---C--CG-AT-CTTAGACTGGGAA
* * *
16372338 TGAACTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCTTAAGTCAACTCACGAAACGAGCGT
752 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * ** * *
16372403 GCGGGTGCTCAG-CTGGCCAGAAGGGTGGGATGCGTAAGTCGAGGATCGATCGGGTCCCC-CTCT
817 GCGGGTGCTCAGTC-GGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGGTCGGGTCCCCTCT-T
* *
16372466 GTGTGCTGTCGATCCTG
880 GTGTGCTGCCGATCCTA
* **
16372483 CTACTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
16372548 AACGAAACAAGCGGACAAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGAAAGCCGTG
66 GACGAAAC-AGCAG-CAGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTG
* * * * * * *
16372613 GATCGATAGGGTGGGAGGTGGGCTTAGACACATCTTCGTATTTCTGCATGCCAACGCCTTTTTTA
129 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA
* * * * *
16372678 TGGGTTGTAAATTCATGCAATGGTCCCTTAAGCCATCACATGAAGTTTTAAGGCAAGACGACTCG
194 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCG
* *
16372743 TTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCGGAA
259 TTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCGGAA
* ** * *
16372808 GGATTTTTGGTTCCAAACTTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACATAAAAATT
323 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* *
16372873 CAGCTAAAAAATC-AATATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
388 CAGCTAAAAACTCGAA-GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
16372937 ACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
452 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
16373002 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
517 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* ** * *
16373067 TGCGCACACCCCCCAGCCATCCCAATCGCCGGAACCCCAATGCCGTCGGTCAAGTTCTC--CG--
582 TGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGCGAT
* *
16373128 G-T-----GAT-GATGCCCCGACGAACAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATTT
647 GCTCCGGCGATGGA-GCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
* * ** *
16373186 GTTGCCGCAACCCTTGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
711 GCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * *
16373251 AATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGTGCTCAGTCGGCCAGAGGG
776 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGG
* *
16373316 GCGGGATGCACAAGCCGGGGGTCGGTCGGGTCCCCT-TTGTGTGCTGCCGATCCTA
841 GCGGGATGCACAAGCCGAGGATCGGTCGGGTCCCCTCTTGTGTGCTGCCGATCCTA
* ** * *
16373371 CTGCTGCAACCCTGGGTCCGGTCTGATCTTTGACTGGGAATGAACTCCGTATGCCTAAGCCAATC
1 CTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
16373436 GATGAAACGAGCAGGCAGGCGAGCCGACGGGCGGGCACTACGCCAGCCAGAGAGACGGGATACGT
66 GACG-AA--A-CA-GCA-GC-AG--G-CGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGC
* * *
16373501 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTGCATGTCAATGC
121 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
16373566 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAG
186 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAG
* *
16373631 ACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTATGGTTTGGGATTTTTTAAAATTTT
251 ACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * *
16373696 TTCGGAAGGAGTTTTGGCCCCAAACATGGTAGACGTAATCCTTGTGTTTTTGTTGGCATGCACAA
316 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
16373761 AAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATG
381 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT-
* *
16373826 TT-AGACATTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
445 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
**
16373890 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACATATCGCA
510 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
16373955 CATGATGTGCGCACACCCCCCGGCCCCCCCGATCCCCGAAACCCCGATGTCGTCGGTCAGGTTCT
575 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT
** * *
16374020 CTAGCGATGCT-CGGCGATGGAGCCTTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCT
640 CT-GCGATGCTCCGGCGATGGAGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
* *
16374084 AGCATGTGCTGCTGCAAGCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
704 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * *
16374149 GACTGGGAATAAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGC-GGCGCTCAG-CTAG
769 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTC-GG
* * * *
16374212 CCAGAGGGGCGGGATGCACAAGCCAAGGATCGGCCGGG-CACCCATCTTCGT-T-TTGTCGATCC
833 CCAGAGGGGCGGGATGCACAAGCCGAGGATCGGTCGGGTC-CCC-TCTT-GTGTGCTGCCGATCC
*
16374274 CA
895 TA
* *
16374276 CT-CTCGTAACCCTCGGTCCGGTCCAATCTTAG-CTTGGGAATGAACTCCGTATGCCTAAGTCAA
1 CTGCT-GCAACCCTCGGTCCGGTCCAATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAA
* **
16374339 CCGACGAAAC-G-AGTAGGCGGGCGGGCACTACGATAGCCAGAGAGACGGGATGCGCAAGCCGTG
64 CCGACGAAACAGCAGCAGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
16374402 GATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTGTGTGCCAATGCCA-TTTTA
129 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA
* * *
16374466 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGAGGACTCG
194 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCG
* *
16374531 TTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAA
259 TTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* *
16374596 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTT
324 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * * *
16374661 AGCTAAAAAATCGAAGTGTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCTATTTCTGACAC
389 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * *
16374726 CTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTCTGAGTTCT-T
454 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
16374790 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
519 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
16374855 CGCACACCCCCCCGGCCCCCCC-ATCACCGGAACCCCAATGCCGCCGATCTGGTTCTCTGACGAT
584 CGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTG-CGAT
* * ** ** * *
16374919 GCTCCGACGATGGTGCCCCGGTGAAGAAAAATACAACACCAGCACATTCTCGAGCCCAGCATGTG
647 GCTCCGGCGATGGAGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * ** *
16374984 CTACCGTAACCCTCAATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
712 CTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
*
16375049 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGTCGGCCAGAGGGG
777 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGG
* * * *
16375114 TGGGATGCATAAGCCGCGGATCGGTCGGGTCCCC-CTTTGTGTGCTGCCGATCCTG
842 CGGGATGCACAAGCCGAGGATCGGTCGGGTCCCCTC-TTGTGTGCTGCCGATCCTA
* * * * * *
16375169 CTGCTGCAACCCTTGGTCCAGTCCAATCTTAGATTGGGATTGAACTCCGTATGCCTAAGCCGACT
1 CTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
16375234 GACGAAAC-G-AGCGGGTGGGCAGGCACTACGCCAGCTAGAGAGACGGGATGCGCAAGCCATGGA
66 GACGAAACAGCAGCAGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
16375297 TCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTACGTGGCAATGCCATTTTTATG
131 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
* * * * * *
16375362 GCTTGTAAATTCATGCAATGGTCCCGTAAGCCTTCGCGTGAAGTTTCATTGCAAGAGGACTCGTT
196 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTT
* * * *
16375427 TTTTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAAGA
261 TTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* * * *
16375492 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTTTTGGCATGCACAAAAAATTTCAA
326 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
16375557 CTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
391 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* ** *
16375622 TAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTCGAAGGGGGTGTGAGTTTTCAAG
456 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
* * *
16375687 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCTAGCACCCATCGCACATCATGTGTG
521 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
**
16375752 CACACCCCCTAGCCCCCCCGATCGCCGGAACCCCAATGCCG
586 CACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCG
16375793 CCGGGCAGCA
Statistics
Matches: 2945, Mismatches: 311, Indels: 135
0.87 0.09 0.04
Matches are distributed among these distances:
888 79 0.03
889 123 0.04
890 4 0.00
891 112 0.04
892 469 0.16
893 314 0.11
894 325 0.11
895 395 0.13
896 205 0.07
897 1 0.00
898 4 0.00
899 1 0.00
900 1 0.00
901 2 0.00
902 1 0.00
903 2 0.00
904 51 0.02
905 212 0.07
906 5 0.00
907 2 0.00
910 2 0.00
911 1 0.00
913 1 0.00
914 3 0.00
915 55 0.02
920 1 0.00
921 2 0.00
922 265 0.09
923 85 0.03
924 184 0.06
925 7 0.00
926 31 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
CTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACAGCAGCAGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGCGATGCTC
CGGCGATGGAGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGGG
ATGCACAAGCCGAGGATCGGTCGGGTCCCCTCTTGTGTGCTGCCGATCCTA
Found at i:16375040 original size:26 final size:26
Alignment explanation
Indices: 16375011--16375063 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16375001 CTGATCCGAT
16375011 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16375037 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16375063 C
1 C
16375064 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16375908 original size:163 final size:163
Alignment explanation
Indices: 16375633--16375958 Score: 530
Period size: 163 Copynumber: 2.0 Consensus size: 163
16375623 AATGGCTACT
* *
16375633 GGCAGCAAACTTGTAAAATCTCAAATGCTCTCGAAGGGGGTGTGAGTTTTCAAGGTTTGATGAGG
1 GGCAGCAAACCTGTAAAATCTCAAATGCTCTCGAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
* * * * *
16375698 GATAGGGGGCCAATATAAGGGCCAAGTGCTAGCACCCATCGCACATCATGTGTGCACACCCCCTA
66 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCACGTGCGCACACCCCC-A
16375763 GCCCCCCC-GATCGCCGGAACCCCAATGCCGCCG
130 GCCCCCCCTGATCGCCGGAACCCCAATGCCGCCG
*
16375796 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTC-AAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
1 GGCAGCAAACCTGTAAAATCTCAAATGCTC-TCGAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
*
16375860 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCACGTGCGCACACCCCCC
65 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCACGTGCGCACACCCCCA
*
16375925 GCCCCCCCTGATCGTCGGAACCCCAATGCCGCCG
130 GCCCCCCCTGATCGCCGGAACCCCAATGCCGCCG
16375959 ATCAGGTTCT
Statistics
Matches: 151, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
162 8 0.05
163 141 0.93
164 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.18
Consensus pattern (163 bp):
GGCAGCAAACCTGTAAAATCTCAAATGCTCTCGAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCACGTGCGCACACCCCCAG
CCCCCCCTGATCGCCGGAACCCCAATGCCGCCG
Found at i:16378897 original size:26 final size:26
Alignment explanation
Indices: 16378858--16378910 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16378848 CCGGTCCGAT
16378858 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
*
16378884 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
16378910 C
1 C
16378911 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:16379346 original size:26 final size:26
Alignment explanation
Indices: 16379294--16379351 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 26
16379284 TATTTTTCAC
* **
16379294 GATTTTTGAAACTTTTTGCGGTTTGA
1 GATTTTTGAAAATTTTTGCGGAATGA
* *
16379320 GATTTTTTAAAATTTTTTCGGAATGA
1 GATTTTTGAAAATTTTTGCGGAATGA
16379346 G-TTTTT
1 GATTTTT
16379352 CGCCCCAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
25 5 0.19
26 22 0.81
ACGTcount: A:0.22, C:0.05, G:0.19, T:0.53
Consensus pattern (26 bp):
GATTTTTGAAAATTTTTGCGGAATGA
Found at i:16379793 original size:25 final size:26
Alignment explanation
Indices: 16379750--16379801 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
16379740 CCGGTTCGAT
*
16379750 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16379776 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16379801 C
1 C
16379802 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16379889 original size:892 final size:881
Alignment explanation
Indices: 16377989--16379977 Score: 2780
Period size: 892 Copynumber: 2.2 Consensus size: 881
16377979 CCAGAGAGAT
* *
16377989 TGGGAATGAACTGCATATGCTT-GACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAC
1 TGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * *
16378053 GAGCGTACGGCTGCTCAGTTGGCCAGA-----GGG--GT-A-----GGATCAGTCGGGTCCCCC-
66 GAGCGTGCGGGTGCTCAG-CGGCCAGAGGGGCGGGATGTAAGCCGGGGATCAGTCGGGTCCCCCT
* * * * **
16378104 CTGCGTGCTGTCGATCCTGCTACCGTAACCCTCGGTCCGATCTGATCTTAGATTTTGAATGAACT
130 CTGCGTGCTGTCGATCCTGCTA-CGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACT
*
16378169 CCGTATGCCTAAGCCAACCGACGAAACGAGCAGGTGGGCGGGCACTACGCCGGCTAGAGAGACGA
194 CCGTATGCCTAAGCCAACCGACGAAACGAGCAGGTGGGCGGGCACTACGCCGGCCAGAGAGACGA
* **
16378234 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTG
259 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTACACG
16378299 CAAATGCCATTTTTACAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
324 CAAATGCCATTTTTACAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * *
16378364 TGGCAAGACGACTCATTTTTTATTTTTCATGATTTTTGAAACTTATTGCGGTTCAAGATTTTTTA
389 TGGCAAGACGACTCATTGTCTATTTTTCACGATTTTTGAAACTTATTGCGGTTCAAGATTTTTTA
* **
16378429 AAATTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTACAGGTGATCCTTGTATTTTTGTTGGCAT
454 AAATTTTTCAGAAGGAGTTTTCGCCCCAAACTTGGTACACATGATCCTTGTATTTTTGTTGGCAT
*
16378494 GCACAAAATAATTCAGCTAAAAACTCGAACTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTC
519 GCACAAAATAATTCAGCTAAAAACTCAAACTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTC
* *
16378559 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGG
584 CCCATTTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
16378624 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCA
649 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* *
16378689 TTGCACATCATGTGCGCACACCTCCCGGCCCCTCCGATCGTCGGAACCCCAATGCCGCCGATCAG
714 TCGCACATCATGTGCGCACA--------CCCCTCCGATCATCGGAACCCCAATGCCGCCGATCAG
* *
16378754 ATTCTCGGTGATGCTCCGACGATGGTGCCCCAACGAAGAGAAATGTGGCACCAACACATGCCCGA
771 ATTCTCGGTGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGTGACACCAACACATGCCCGA
* *
16378819 GCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGAC
836 GCCCAGCATGTGCTGCCGCAAACCTCGGTCCGGTCCGATCTTAGAC
* * * * *
16378865 TGAGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTGAACCGACGAAAT
1 TGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* ** * *
16378930 GAGCATGCGGGTGCTCAGCGGCCAGAGGGGCGGGATGCATAAGCCGGGGATTGGCCGGGTGCCCC
66 GAGCGTGCGGGTGCTCAGCGGCCAGAGGGGCGGGATG--TAAGCCGGGGATCAGTCGGGTCCCCC
* * **
16378995 TCTACGTGCTG-CTGATCTTGCTATCGCAACCCTCAGTTTGGTCTGATCTTAGACTGGGAATGAA
129 TCTGCGTGCTGTC-GATCCTGCTA-CGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAA
* * * *
16379059 CTCCATATACCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCAGGTGGGCACTACGTCGGCC
192 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGT----GGGC----GGGCACTACGCCGGCC
* *
16379124 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGTAACATCTTCATA
249 AGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATA
* **
16379189 TTTCTACACGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
314 TTTCTACACGCAAATGCCATTTTTACAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * **
16379254 TGAAGTTTCATGGCAAGACGACTCGTTGTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTG
379 TGAAGTTTCATGGCAAGACGACTCATTGTCTATTTTTCACGATTTTTGAAACTTATTGCGGTTCA
* * *
16379319 AGATTTTTTAAAATTTTTTCGGAATGAGTTTTTCGCCCCAAAAC-TGGTAGACATGATCCTTGTA
444 AGATTTTTTAAAA-TTTTTCAGAAGGAG-TTTTCGCCCC-AAACTTGGTACACATGATCCTTGTA
* * *
16379383 TTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCAAAGTGTACAA-AGTTTTGTGACTAT
506 TTTTTGTTGGCATGCACAAAATAATTCAGCTAAAAACTCAAACTGTACAAGA-TTTTCTGACCAT
* *
16379446 TTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTGCTGGCAGAAAACCTGTAAAATCTCAA
570 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAA
16379511 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
635 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
*
16379576 AGTACCAGCACCCATCGTACATCATGTGCGCACA-CCC-CCGATCATCGGAACCCCAATGCCGCC
700 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCGATCATCGGAACCCCAATGCCGCC
* * * ** * *
16379639 GGTCAGGTTCTCTGGTGATGCTTCGACGATGGTGCCCCAGTGAAGAAAAATGTTACACCAGCACA
765 GATCAGATTCTC-GGTGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGTGACACCAACACA
* * *
16379704 TGCTCGAGCCCAGTATGTGCTGCCGCAAACCTCGGTCCGGTTCGATCTTAGAC
829 TGCCCGAGCCCAGCATGTGCTGCCGCAAACCTCGGTCCGGTCCGATCTTAGAC
* *
16379757 TGGGAATGAACTTCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
1 TGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
*
16379821 GAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCAGTTGGGTCCCC
66 GAGCGTGCGGGTGCTCAG-CGGCCAGAGGGGCGGGATGT--AAGCCGGGGATCAGTCGGGTCCCC
* *
16379886 CTCTGTGTGCTGTCGATCCTGCTACTGCAACCCTCAGCCCGGTCTGATCTTAGACTGGGAATGAA
128 CTCTGCGTGCTGTCGATCCTGCTAC-GCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAA
* * *
16379951 CACTGTATGCCTAAGCCATCCGACGAA
192 CTCCGTATGCCTAAGCCAACCGACGAA
16379978 GTACCAGCAC
Statistics
Matches: 975, Mismatches: 102, Indels: 56
0.86 0.09 0.05
Matches are distributed among these distances:
876 27 0.03
877 52 0.05
881 3 0.00
883 1 0.00
885 1 0.00
886 1 0.00
890 1 0.00
891 101 0.10
892 319 0.33
893 1 0.00
896 4 0.00
900 208 0.21
901 205 0.21
902 47 0.05
903 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (881 bp):
TGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
GAGCGTGCGGGTGCTCAGCGGCCAGAGGGGCGGGATGTAAGCCGGGGATCAGTCGGGTCCCCCTC
TGCGTGCTGTCGATCCTGCTACGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
GTATGCCTAAGCCAACCGACGAAACGAGCAGGTGGGCGGGCACTACGCCGGCCAGAGAGACGAGA
TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTACACGCA
AATGCCATTTTTACAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
GCAAGACGACTCATTGTCTATTTTTCACGATTTTTGAAACTTATTGCGGTTCAAGATTTTTTAAA
ATTTTTCAGAAGGAGTTTTCGCCCCAAACTTGGTACACATGATCCTTGTATTTTTGTTGGCATGC
ACAAAATAATTCAGCTAAAAACTCAAACTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCC
CATTTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
GCACATCATGTGCGCACACCCCTCCGATCATCGGAACCCCAATGCCGCCGATCAGATTCTCGGTG
ATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGTGACACCAACACATGCCCGAGCCCAGCATG
TGCTGCCGCAAACCTCGGTCCGGTCCGATCTTAGAC
Found at i:16380201 original size:26 final size:26
Alignment explanation
Indices: 16380163--16380215 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16380153 CCAGTTCGAT
*
16380163 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
16380189 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
16380215 C
1 C
16380216 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16380431 original size:413 final size:410
Alignment explanation
Indices: 16379610--16380601 Score: 1479
Period size: 414 Copynumber: 2.4 Consensus size: 410
16379600 TGTGCGCACA
* *
16379610 CCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGTGATGCT-TCGACGATGGTGC
1 CCCCCGATCATCGGAACTCCAATGCCGCCGGTCAGGTTCTCTGGTGATGCTCT-GACGGTGGTGC
16379674 CCCAGTGAAGAAAAATGTTACACCAGCACATGCTCGAGCCCAGTATGTGCTGCCGCAAACCTCGG
65 CCCAGTGAAGAAAAATGTTACACCAG-ACATGCTCGAGCCCAGTATGTGCTGCCGCAAACCTCGG
* *
16379739 TCCGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGAATGAACTCCGTATGCCT
129 TCC-GTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAATGAACTCCATATGCCT
* * **
16379804 AAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGG
193 AAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCAAGAGGGGCGGGATGCGCAAGCCAA
* * * *
16379869 GGATCAGTTGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACTGCAACCCTCAGCCCGGTCTGAT
258 GGATCAGTCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTACTGCAACCCTCAGCCCGATCTGAT
* * *
16379934 CTTAGACTGGGAATGAACACTGTATGCCTAAGCCATCCGACGAAGTACCAGCACCCATCGCACAG
323 CTTAAACTGGGAATCAACACTATATGCCTAAGCCATCCGACGAAGTACCAGCACCCATCGCACAG
*
16379999 CATGTGCGCACAGCCCCCGTGACC
388 CATGTGCGCACACCCCCCGTG-CC
* *
16380023 CCCCCGATCGTCGAAACTCCAATGCCGCCGGTCAGGTTCTCTGGTGATGCTCTGACGGTGGTGCC
1 CCCCCGATCATCGGAACTCCAATGCCGCCGGTCAGGTTCTCTGGTGATGCTCTGACGGTGGTGCC
*
16380088 CCAGTGAAGAAAAATGTTACACCAGTACATGCTCGAGCCCAGTATGTGCTGCCGCAAACCTCGAT
66 CCAGTGAAGAAAAATGTTACACCAG-ACATGCTCGAGCCCAGTATGTGCTGCCGCAAACCTCGGT
*
16380153 CCAGTTCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCT
130 CC-GTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAACTCCATATGCCT
*
16380218 AAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCAAGAGGGGCGGGATGCGTAAGCCAA
193 AAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCAAGAGGGGCGGGATGCGCAAGCCAA
* *
16380283 GGATC-GATCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCTGCAACCCTCAGCCTGATCTGA
258 GGATCAG-TCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTACTGCAACCCTCAGCCCGATCTGA
* * *
16380347 TCTTAAACTGGGAGTCAACTCTATATGCCTAAGCCATCCGACGAAGTACCATCACCCATCGCACA
322 TCTTAAACTGGGAATCAACACTATATGCCTAAGCCATCCGACGAAGTACCAGCACCCATCGCACA
* *
16380412 TCATGTGCGCAC-CCCCCCGTGGC
387 GCATGTGCGCACACCCCCCGTGCC
* *
16380435 CCCCCGATCATCGGAACTCCAATGCCGCCGGTCAAGTTCTCCGGTGATGCTCTGACGGTGGTGCC
1 CCCCCGATCATCGGAACTCCAATGCCGCCGGTCAGGTTCTCTGGTGATGCTCTGACGGTGGTGCC
* ** * * * * * * *
16380500 CC-GATAAAGAAAAATGTGGCACCAAGACGTGCCCGAGCCTAGCATGTGCTGTCGTAACCCTCGG
66 CCAG-TGAAGAAAAATGTTACACC-AGACATGCTCGAGCCCAGTATGTGCTGCCGCAAACCTCGG
* *
16380564 TCCGATCCGATCTTAGACTGGGAATAAACTCCGTATGC
129 TCCG-TTCGATCTTAGACTGGGAATGAACTCCGTATGC
16380602 CTAAGCCAAC
Statistics
Matches: 525, Mismatches: 48, Indels: 13
0.90 0.08 0.02
Matches are distributed among these distances:
411 2 0.00
412 143 0.27
413 174 0.33
414 206 0.39
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.21
Consensus pattern (410 bp):
CCCCCGATCATCGGAACTCCAATGCCGCCGGTCAGGTTCTCTGGTGATGCTCTGACGGTGGTGCC
CCAGTGAAGAAAAATGTTACACCAGACATGCTCGAGCCCAGTATGTGCTGCCGCAAACCTCGGTC
CGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAATGAACTCCATATGCCTAAG
TCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCAAGAGGGGCGGGATGCGCAAGCCAAGGA
TCAGTCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTACTGCAACCCTCAGCCCGATCTGATCTT
AAACTGGGAATCAACACTATATGCCTAAGCCATCCGACGAAGTACCAGCACCCATCGCACAGCAT
GTGCGCACACCCCCCGTGCC
Found at i:16380943 original size:26 final size:26
Alignment explanation
Indices: 16380907--16380958 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16380897 CGGTGCGATA
* *
16380907 TTAGACTGGGACTGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
16380933 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
16380959 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:16382568 original size:903 final size:902
Alignment explanation
Indices: 16380728--16382617 Score: 2489
Period size: 903 Copynumber: 2.1 Consensus size: 902
16380718 CATCATGTGC
* * * * * *
16380728 GCACCCATCTCACATCATGAGCGCACACCCCCCCAGCCCCTCTGATCGCTGGAACACCAATGCCG
1 GCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCG
* * * * *
16380793 CCGGTTAGGTTCTCCGATGATCCTCCGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCA
66 CCGGTCAGATTCTCCGATGATCCTCCAGCGATGGTGCCCCGACAAAGAAAAATACGGCACCAGCA
* * * * * * *
16380858 CATGCTCGAGCCCAGCATATGCTGCCGCAACCTTCGGTCCGGTGCGATATTAGACTGGGACTGAA
131 CATGCTCGAGCCCAGCATACGCTGCCGCAACCCTCGATCCGATGCAATATTAGACTAGGAATGAA
* * **
16380923 CTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCGCGAAACGAGCATGTGG
196 CTCTGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGG
* * * * * *
16380988 GTGATCAGTCGGCTAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCAGGTCCCCTTTTGCATGC
261 GTCATCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTACATGC
* ** * * * *
16381053 TACCGATCTTACTGTCGCAACCCTCGGTCCAGTCCGATCTTAAACTGGGAATGAACTCTGTATGC
326 TACCGATCCTACTACCGCAACCCTCAGTCCAGTCCGATATTAAACTAGGAATGAACTCCGTATGC
* ** * ** *
16381118 CTAAGCCAACCGACGAAACGAATGGGCGGGTGGGAGGGTGGGCACTACGCCGACCAGAGAGACAG
391 CTAAGCCAACCGACGAAACGAACGGGCGGGACGAAGGGCAGGCACTACACCGACCAGAGAGACAG
** * * * *
16381183 GATGCGCAAGCCGTGGATCGCTAGGGTGGTTGGTGGGTTTAGGTACATCTTCATATTTTTGCGTG
456 GATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTG
* * *
16381248 CCAATTCCATTTTTATGGCTTGTAAATTCATATAGTGGTCCCTTAAGCCTTCACGTGAAGATTCA
521 CCAATGCCATTTTTATGGCTTGCAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGATTCA
* ** ***
16381313 TGGCAAGACGACTCGTTTTCTTTTTTTCACAATTTTCAAAACTTTTTGGGGTTTGGGATTTTTTA
586 TGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCCAGATTTTTTA
* ** * * *
16381378 AAATTTTTTCGGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
651 AAATTTTTTCGGAAGGAGTTTTGGCAACAAACCTGGCAGACATGATCCTTGTATTTTTGTTGGCA
* *
16381443 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAGGTGTCC
716 TGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAGTGTCC
* *
16381508 CCATTTTAGACATTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAG
781 CCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAG
*
16381573 GTGTGAGTTCTCGAGGTTTGATGCGGGATAGGAGGCCAATATAAGGGCCAAGTACCA
846 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCA
** * **
16381630 GCACCCATCGTACTTCATGTGCGCACACTCCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCC
1 GCACCCATCACACATCATGTGCGCACAC-CCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCC
* * * * *
16381695 GTCGGTCCGATTCTCCGGTGATGCTCCAGCGATGGTGCCCCGGCAAAGAAAAATACGGCACCAGC
65 GCCGGTCAGATTCTCCGATGATCCTCCAGCGATGGTGCCCCGACAAAGAAAAATACGGCACCAGC
* * * *
16381760 ACATGCTCGAGCCCAGCATGCGCTGCTGCAACCCTCGATCCGAT-CTAATCTTGGACTAGGAATG
130 ACATGCTCGAGCCCAGCATACGCTGCCGCAACCCTCGATCCGATGC-AATATTAGACTAGGAATG
* * * * *
16381824 AACTTTGCATGCTTAGACTGGGAATGAACTCCGTTTGCTTAAGTCAACCCACGAAAGGAGCGTAC
194 AACTCTGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATAC
* * * * *
16381889 GGG-CACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTACG
259 GGGTCA-TCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTACA
** * * * * * *
16381953 TGCTGTCGATCCTGCTACCGTAACCCTCAGTTCGGTCC-ACTATTAGACTAGGTATGAACTCCGT
323 TGCTACCGATCCTACTACCGCAACCCTCAGTCCAGTCCGA-TATTAAACTAGGAATGAACTCCGT
* ** * * *
16382017 ATGCCTAAGCCCACCGGTGAAACGAGCGGTC-GGACGAACGGGCAGGCACTACACCGGCCAGAGA
387 ATGCCTAAGCCAACCGACGAAACGAACGGGCGGGACGAA-GGGCAGGCACTACACCGACCAGAGA
* *
16382081 GACGGGATGCGCAAGCTGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
451 GACAGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
16382146 ACGTGCCAATGCCATTTTTATGGCTTGCAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAG
516 ACGTGCCAATGCCATTTTTATGGCTTGCAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAG
* * ** *
16382211 TTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCCAGATT
581 ATTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCCAGATT
* *
16382276 TTTTAAAATTTTTTTGGAAGTAGTTTTGGCAACAAACCTGGCAGACATGATCCTTGTATTTTTGT
646 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCAACAAACCTGGCAGACATGATCCTTGTATTTTTGT
** *
16382341 TGGTGTGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAA
711 TGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG--AAA
16382406 AGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAA-CTGTAAAATCTCAAATGCTCTT
774 AGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * * *
16382470 TAAGTG-TGTTTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTA
839 TAAG-GAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCA
** *
16382534 GCACCCATCACACATCATGTGCGCACAGCCCCCCGCCCCGCCCCCCGATCACTGGAACCCCAATG
1 GCACCCATCACACATCATGTGCGCACA-CCCCCC-CGGC-CCCCCCGATCGCTGGAACCCCAATG
*
16382599 CCACCGGTCA-AGTTCTCCG
63 CCGCCGGTCAGA-TTCTCCG
16382618 GCGATGGTGG
Statistics
Matches: 844, Mismatches: 132, Indels: 20
0.85 0.13 0.02
Matches are distributed among these distances:
902 31 0.04
903 622 0.74
904 108 0.13
905 47 0.06
906 36 0.04
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (902 bp):
GCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCG
CCGGTCAGATTCTCCGATGATCCTCCAGCGATGGTGCCCCGACAAAGAAAAATACGGCACCAGCA
CATGCTCGAGCCCAGCATACGCTGCCGCAACCCTCGATCCGATGCAATATTAGACTAGGAATGAA
CTCTGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGG
GTCATCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTACATGC
TACCGATCCTACTACCGCAACCCTCAGTCCAGTCCGATATTAAACTAGGAATGAACTCCGTATGC
CTAAGCCAACCGACGAAACGAACGGGCGGGACGAAGGGCAGGCACTACACCGACCAGAGAGACAG
GATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTG
CCAATGCCATTTTTATGGCTTGCAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGATTCA
TGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCCAGATTTTTTA
AAATTTTTTCGGAAGGAGTTTTGGCAACAAACCTGGCAGACATGATCCTTGTATTTTTGTTGGCA
TGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAGTGTCC
CCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAG
GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCA
Found at i:16383319 original size:26 final size:26
Alignment explanation
Indices: 16383283--16383333 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16383273 CCAGTTTGAT
16383283 CTTAAACTGGGAATGAACTTCGTATG
1 CTTAAACTGGGAATGAACTTCGTATG
* *
16383309 CTTAGACTGGGAATGAACTTTGTAT
1 CTTAAACTGGGAATGAACTTCGTAT
16383334 CCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTTCGTATG
Found at i:16383847 original size:76 final size:76
Alignment explanation
Indices: 16383734--16383878 Score: 236
Period size: 76 Copynumber: 1.9 Consensus size: 76
16383724 TACGGTTCGA
* ** * *
16383734 GATTTTTTAGAATTTTTTTGGAAGGCGTTTTGGCCCCAAACTTGGTAGACGGGATCCTTGTATTT
1 GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAAACTTGGTAGACGGGATCCTTGTATTT
16383799 TTGTGGTTTGG
66 TTGTGGTTTGG
*
16383810 GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTT
1 GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAAACTTGGTAGACGGGATCCTTGTATTT
16383875 TTGT
66 TTGT
16383879 TGGCATGCAC
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
76 63 1.00
ACGTcount: A:0.21, C:0.12, G:0.23, T:0.43
Consensus pattern (76 bp):
GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAAACTTGGTAGACGGGATCCTTGTATTT
TTGTGGTTTGG
Found at i:16386907 original size:26 final size:26
Alignment explanation
Indices: 16386869--16386921 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16386859 CTAGTCCGAT
*
16386869 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
16386895 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16386921 C
1 C
16386922 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16387355 original size:887 final size:883
Alignment explanation
Indices: 16383796--16387799 Score: 4942
Period size: 887 Copynumber: 4.5 Consensus size: 883
16383786 GATCCTTGTA
* * ** *
16383796 TTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAAACTTGGTAGACG
1 TTTTTATGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
16383861 TGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATT
66 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
16383926 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACAGGCAACAAGCCTGT
131 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
16383991 AAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAAT
196 AAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG-GGGCCAAT
* * * *
16384056 ATAAGGGCCAAGTACCAACACCCATCGCACAACCTGTGCG-ACACCCCCTTGG-CCCCCCGATCG
260 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCCGATCG
* * * * *
16384119 TCGGAACCCAAATACCGCCGGTCAGGTTCTCC-GACGATG-G-TGCCCCAAGGAAGAAAAATACG
324 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGATGATGAGATGCCCCGACGAAGAAAAATACG
* * *
16384181 GCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCCAACCTCGTCCAATCGATCTTAGACTGG
389 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG-CAACCTCGT-TAGTCGATCTTAGACT-G
* *
16384246 GAATCAACTCCGCATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACCAAACGAG
451 GAAT-AACTCCG-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * **
16384311 CGTGCGGGCACTCAGCCGACCAGAGGGACGGGATGCGCAAGTCGAGGCTCGATCGGGTCTTTCTC
514 CGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTC-CCCTC
* * * * *
16384376 TGCGTGTTACCGATCCTGCTACCGCAACCCTCAGTTTGGTCCAATCATAGACTGGGAATGAACTC
578 TACGTGCTACCGATCCTGCTACCGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTC
* * * * * * *
16384441 C-TATGCGTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTACGTCGGTCGGA
643 CGTATGCCTAAGCCAACCGACGAAACGATCGGGCGGGTGGGC--G--GGCACTACGCCAGCCAGA
* * * *
16384505 GAGACGGGATGCACAAGCCATGGATCAATAGGGTGGTCGGTGGGTTTAGGCACATCTTCATATTT
704 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
*
16384570 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
769 CTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * *
16384635 AGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCA-CGATTTTGGAAAC
834 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAGATTTTCGAAAC
* * *
16384684 TTTTTATGGTTCGGGATTTTTTAGAATTTTTTTGGAAGGTGTTTTGGCCCCAAACTTGGTAGACA
1 TTTTTATGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
16384749 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
66 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
16384814 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGG-TACTGGCAGCAAACCTG
131 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA-TGGCTACTGGCAGCAAACCTG
* *
16384878 TAAAATCTCAAACGCTCTTTAAAGGGGTGTGAGGTCTCAAGGTTTGATGAGGGATACGGGGCCAA
195 TAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGGGCCAA
* * * *
16384943 TATAAGGGCCAAGTACCAGCACCCATCACACATCATTTGCACACACCGCCCCTGGCCTCCCCGAT
259 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCC-GGCCCCCCCGAT
* * * *
16385008 CGCCGGAACCCTAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCAGTGATGGTGCCCCGACGAA
322 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG--GATG----A-TGA-GATGCCCCGACGAA
** * ** *
16385073 GAAAAATGTGGCACCAGCACATTCAAGAGCCCAGCATGTGCTGCCACAACC-C-TT-G--G-TC-
379 GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTCGTTAGTCGATCT
*
16385131 ----C-GG------TCCGAT-CTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
444 TAGACTGGAATAACTCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * * *
16385184 ACGAGCGTACAGGCGCTCAGTCGGCTAGAGGGGCGGGATGCACAAGTCGGGGATCGACCGGGTCC
509 ACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCC
* ** *
16385249 CCT-T-C-TG----C-A---TGCTACCGTAACCCTCCA-TCTATTCTGATCTTAGACTGGGAATG
574 CCTCTACGTGCTACCGATCCTGCTACCGCAACCCT-CAGTCTGGTCTAATCTTAGACTGGGAATG
** * * * *
16385302 AACTGTGTATGCCTAAGCCAACCGACGAAACGAACGAGCGGGCAGGCGAACGGGCACTACGTCAG
638 AACTCCGTATGCCTAAGCCAACCGACGAAACGATCGGGCGGG-TGG-G--CGGGCACTACGCCAG
* * * *
16385367 CCAGAAAGATGGGATGCGCAAGCCGTGGATCGATAAGGCGGTAGGTGGGTTTAGGCACATCTTCA
699 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
** *
16385432 TATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCA
764 TATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * *
16385497 CGTGAAGTTTCATAGCAAGATGACTCATTTTCTATTTTTCAT-GATTTTTGAAAC
829 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAGATTTTCGAAAC
* * * *
16385551 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTCGTAGACA
1 TTTTTATGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * *
16385616 TGATCCCTGTATTTTTTTTGGCATGCACAGAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
66 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
16385681 TTGTGACCATTTGAAAAAATTGTGCCCATTTCATACACTTTAATGGCTACTGGCAGCAAACCTGT
131 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
16385746 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTC-AGGTTTGATGAGGGATAGGGTCCAAT
196 AAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTC-TCAAGGTTTGATGAGGGATAGGGGCCAAT
* * * *
16385810 ATAATGGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACACCCCCTCGGCTCCTCCGATCG
260 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCCGATCG
* * * * * *
16385875 TCGGAACCCTAATACCGTCGGTCAGGTTCTCCGGCAATCCTCTGACGATGTTGCCCCGACAAAGA
324 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG--A-----TGATGA-GATGCCCCGACGAAGA
* *
16385940 AAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT---G----C-C-TTAATC---CTCA
381 AAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTCGTTAGTCGATCTTA
* *
16385993 GTCTGG--T--CT--GAT-CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
446 GACTGGAATAACTCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * * * *
16386051 GAGCATGCGGCCACTCAGCTGGCCAGAGGGGCGGGTTGTGCAAGTCAGGGATCGATCGAGTCCCC
511 GAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCC
** * *
16386116 TTCTACGTGCTGTCGATCCTGCTACCGTAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAA
576 -TCTACGTGCTACCGATCCTGCTACCGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAA
* * *
16386181 CTCCATATGTCTAAGCC-ACCGACGAAACGAGT-GGGTGGGTGGGAGGGCGGGCACTACGCCAGC
640 CTCCGTATGCCTAAGCCAACCGACGAAACGA-TCGGGCGGGT----GGGCGGGCACTACGCCAGC
* *
16386244 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGTACATCTTCAT
700 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * * * *
16386309 ATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATATAGTAGTCCCTTAAGCCTTCAC
765 ATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * * *
16386374 GTGAAGATTCATGGCAAGACGACTTGTTTTCTATTTTCCACA-ATTTTCAAAAC
830 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAGATTTTCGAAAC
** * * * *
16386427 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTGGGAAGGAGTTTTGGCACCAAACTTGGTGGTCG
1 TTTTTATGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * *
16386492 TGATCTTTGTATTTTTTTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
66 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
16386557 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
131 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* ** *
16386622 AAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGCCCCAT
196 AAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG-CCAAT
16386687 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT-GT
260 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT
** **
16386751 CGGAACCCCAATGCTACCGGTCAGGTTCTCCGG-TGATG-GAT-CCCCGACGAAGAAAAATGTGG
325 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGATGATGAGATGCCCCGACGAAGAAAAATACGG
* *
16386813 CACGAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTA
390 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CCTC-GT-TAGT-CGATCTTAGACT-
* * * *
16386878 GGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTATGAAATGA
450 GGAAT-AACTCCG-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
** * *
16386943 GCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCGCCCT
513 GCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTC-CCCT
* * * * * *
16387008 CCACGTGCTACCAATCCTGCTGCCACAACCCTCAGTCTGGTTTGATCTTAGACTGGGAATGAACT
577 CTACGTGCTACCGATCCTGCTACCGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACT
* * * * * *
16387073 CCGTATGCCTCAGCCAACCGATGAAACGATCAGGCGGGTGGGCGGGTACTACGCCGGCCAGATAG
642 CCGTATGCCTAAGCCAACCGACGAAACGATCGGGCGGGTGGGCGGGCACTACGCCAGCCAGAGAG
* *
16387138 ATGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
707 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
* *
16387203 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGACCTTTAAGCCTTCACGTGAAGT
772 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
16387268 TTCATGGCAAGACGACTCGTTTTCTATTTTTCATAG-TTTTCGAAAC
837 TTCATGGCAAGACGACTCGTTTTCTATTTTTCATAGATTTTCGAAAC
* * * *
16387314 TTTTTATGGTTCGGGATTTTTTACACTTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGCAGACG
1 TTTTTATGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
16387379 TGATCCTTGTATTTTTATTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
66 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
16387444 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
131 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
16387509 AAAATCTCAAACGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAAT
196 AAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT-AGGGGCCAAT
* *
16387574 ATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCCGGCCTCCCCTG-T
260 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CCGGCC-CCCCCGAT
* * * * *
16387638 CGCCGGAACCTCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACAAA
322 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG--GATGAT--GA-GA---TGCCCCGACGAA
* * *
16387703 AAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTTCGGTTCGGTTCG
379 GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC-TC-GTT-AG-TCG
16387768 ATCTTAGACTGGGAATGAACTCCGCATGCTTA
440 ATCTTAGACT-GGAAT-AACTCCG-ATGCTTA
16387800 AGTCAACCAA
Statistics
Matches: 2700, Mismatches: 301, Indels: 217
0.84 0.09 0.07
Matches are distributed among these distances:
858 4 0.00
859 1 0.00
863 1 0.00
864 48 0.02
865 198 0.07
866 94 0.03
867 447 0.17
868 5 0.00
869 5 0.00
870 3 0.00
871 1 0.00
872 1 0.00
873 2 0.00
874 3 0.00
875 33 0.01
876 443 0.16
877 107 0.04
878 95 0.04
879 4 0.00
880 10 0.00
881 2 0.00
883 1 0.00
886 2 0.00
887 461 0.17
888 282 0.10
889 19 0.01
890 200 0.07
891 59 0.02
892 1 0.00
893 3 0.00
894 5 0.00
895 2 0.00
897 2 0.00
898 1 0.00
899 3 0.00
900 5 0.00
901 97 0.04
902 50 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (883 bp):
TTTTTATGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC
GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGATGATGAGATGCCCCGACGAAGAAAAATACGGC
ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTCGTTAGTCGATCTTAGACTGGAATA
ACTCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
GCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCTCTACGTGCT
ACCGATCCTGCTACCGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCC
TAAGCCAACCGACGAAACGATCGGGCGGGTGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGC
GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
AGACGACTCGTTTTCTATTTTTCATAGATTTTCGAAAC
Found at i:16390194 original size:26 final size:26
Alignment explanation
Indices: 16390142--16390194 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16390132 CTAGTCCGAT
* *
16390142 CTTAGATTGGGAATGAACTCTGGATG
1 CTTAGACTGGGAATGAACTCCGGATG
* *
16390168 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGGATG
16390194 C
1 C
16390195 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGGATG
Found at i:16391079 original size:26 final size:26
Alignment explanation
Indices: 16391043--16391094 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16391033 TGGTTTGATT
16391043 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
16391069 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
16391095 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:16391510 original size:901 final size:897
Alignment explanation
Indices: 16388900--16392072 Score: 4299
Period size: 901 Copynumber: 3.6 Consensus size: 897
16388890 GAAACTTTTC
* * *
16388900 TATTTTTGTTGGCATGCACAAAAAAGTTCAGCTAAAAACTTGAAGTGTAAAAGATTTTGTGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
*
16388965 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
*
16389030 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG-CCAATATAAGGGCC
* * * *
16389095 AAGTACCAGCACCCACCGCACATCATAG-GCGTACACCCCCCGGCCCCCCTGATCGTCGAAACCC
195 AAGTACCAGCACCCATCGCACATCAT-GTGCGCACACCCCCC-GCCCCCCCGATCGTCGGAACCC
* * * * * * ** *
16389159 CAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGG
258 TAATGCCGCCGGTCAGGTTCTTCGGCGATGCTTCGGTGATGGTGCCCTGGTGAAGAAAAATGCGG
* * * *
16389224 CACCAGCACATGCCCAAGCCTAGCATGTGTTGCCACAA-CC-C--TC--G---G-TC-----C--
323 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
* * *
16389272 GG--T---C-C-G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTACGTCAACCCATGAAACAA
388 GGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * *
16389328 GCGTGCGGGCG-TGCAGTCGGCCAAACGGGCGGGATGCGTAAGCCGAGGATCGGTCGGGTCCCCC
453 GCGTGCGGGCGCT-CAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCGATCGGGTCCCCC
* * * * *
16389392 TCTGCGTATTGCCAATCCTGCTACTGCGACCCTCGATCT-GGCCCAATCTTACACTGGGAATGAA
517 TCTGCGTACTGCCAATCCTGCTAC-CCAACCCTC-ATCTCGGTCCAATCTTAGACTGGGAATGAA
* * ** *
16389456 CTCTGTATGCCTAAGGCAACCGACGAAACGAGCGGACGGGCAAGCGGGCGGGCACTACGCCTGCC
580 CTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCC
*
16389521 AGATAGACGGGATGC-ATAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
645 AGAGAGACGGGATGCGA-AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
*
16389585 ATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCAC
709 ATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * *
16389650 ATGAAGTTTCACGGCAAGAGGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGATT-
774 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC
* * * * *
16389714 TGAGATTTTTTTAAATTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
839 AG-GA-TTTTTTAAATTTTTTCGAAAGAGTTTTGGCCCC-AACTTGGTAGATGTGATCCTTG
* *
16389776 TATTTTTGGTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
*
16389841 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
16389906 AATGCTCTTTAAAGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCC
*
16389971 AAGTACCAG-A---A---C-C--CA--T-CGCACACCCCCCGTCCCCCCGATCGTCGGAACCCTA
195 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCGATCGTCGGAACCCTA
* * * * * * *
16390023 ATGCCGCCGGTTAGGTTTTTCGGCGATGCTCCGGCGATGGCGCCCCGGTGAAGAAAAGTGCGGCA
260 ATGCCGCCGGTCAGGTTCTTCGGCGATGCTTCGGTGATGGTGCCCTGGTGAAGAAAAATGCGGCA
* *
16390088 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGATTGGG
325 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
* *
16390153 AATGAACTCTGGATGCTTAGACTGTGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
390 AATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * *
16390218 GTGCGAGCGCTTAGCCGACCAGAGGGGCGAGATGCGCAAGCTG-GTGATC-AGTCGGGTCCCCCT
455 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGAG-GATCGA-TCGGGTCCCCCT
* * * * ** *
16390281 CTGCGTCCTGCCAATCTTGCTGCCGAACCCTCAGTCT-GGTCTGATCTTAGATTGGGAATGAACT
518 CTGCGTACTGCCAATCCTGCTACCCAACCCTCA-TCTCGGTCCAATCTTAGACTGGGAATGAACT
* * *
16390345 CTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCAGGTC-GGCGGGCACTACGTCGGCCA
582 CTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GGGCGGGCGGGCACTACGCCGGCCA
*
16390409 GAGAGACGGGATGCGAAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
646 GAGAGACGGGATGCGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* *
16390474 TTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAGTTCATACAATGGTCCCTTAAGCCTTCACGT
711 TTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * ** * *
16390539 AAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTTCGGTTCGG
776 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG
16390604 GATTTTTTAAACTTTTTTTCGAAAGAGTTTT-GCCCCAGACTTGGTAGATGTGATCCTTG
841 GATTTTTTAAA--TTTTTTCGAAAGAGTTTTGGCCCCA-ACTTGGTAGATGTGATCCTTG
*
16390663 TGTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
16390728 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
16390793 AACGCTCTTTAAGGGGGTGTTAGTTCCCAAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG-GGCCAATATAAGGGCC
* *
16390858 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCGAACATCGGAACCCTA
195 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCGATCGTCGGAACCCTA
** * * *
16390923 ATGCTACCGGTCAGGTTCTTCGGTGATGCTTCGGTGATGGTGCCCTGATGAAGAAAAATGTGGCA
260 ATGCCGCCGGTCAGGTTCTTCGGCGATGCTTCGGTGATGGTGCCCTGGTGAAGAAAAATGCGGCA
* ** *
16390988 CCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTTTGATTTTAGACTGGG
325 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
** *
16391053 AATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
390 AATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * *
16391118 GTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGTCGAGGATCGACCAGGTCCCCCTCT
455 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCGATCGGGTCCCCCTCT
* * * * * * * *
16391183 GTGTGCTGTCGATCCTGCTACCACAACCCTCATTTCGGTCCAATCTTAGACTAGGAAAGAACTCC
520 GCGTACTGCCAATCCTGCTACC-CAACCCTCATCTCGGTCCAATCTTAGACTGGGAATGAACTCT
* * *
16391248 GTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCGGGCGGGTACTACGCCGGTCAGAG
584 GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAG
* * *
16391313 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCTCATCTTCATATTTC
649 AGACGGGATGCGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * *
16391378 TGCGTGCCAATGCCATTTTTATGGCTGGTAAATTCATACATTTGTCCCTTAAGCCTTCACGTGAA
714 TGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
*
16391443 GTTTCATGGCAAGACGACTCGTTTTCTTTTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGAT
779 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGAT
16391508 TTTTTAAAATTTTTTC-ACAAGGAGTTTTGGCCCCAACTTGGTAG-TCGTGATCCTTG
844 TTTTT-AAATTTTTTCGA-AA-GAGTTTTGGCCCCAACTTGGTAGAT-GTGATCCTTG
* *
16391564 TATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACACGAAGTGTACAAGATTTTGTGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
*
16391629 TTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
16391694 AATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTCATGAGGGATAAGGGGCCAATATATGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT-AGGGGCCAATATAAGGGCC
* * * *
16391759 AAGTACCAGCACCCATCGCACATCATGGGCGCACACCCCGCCCGGCCCCTCGATCGTCGAAACCC
195 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC-CCCGCCCCCCCGATCGTCGGAACCC
** * *
16391824 CGATGCCGTCGGTCAGGTTCTCCGGCGATGCTTCGGTGATGGTGCCCTGGTGAAGAAAAATGCGG
258 TAATGCCGCCGGTCAGGTTCTTCGGCGATGCTTCGGTGATGGTGCCCTGGTGAAGAAAAATGCGG
* * * * * *
16391889 CACCAACACATGCCCAAGCCCAGCATGTGCTGCCACACCCCTAGGTCCGGTCCGATCTTAGACTG
323 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
16391954 GGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
388 GGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * *** *
16392019 GCGTGC-TGCGCTCAACCAGCCAGAGGGAATGGATCCGTAAGCCGAGGATCGATC
453 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCGATC
16392073 TTAGACTGGG
Statistics
Matches: 2019, Mismatches: 213, Indels: 104
0.86 0.09 0.04
Matches are distributed among these distances:
862 106 0.05
863 13 0.01
864 1 0.00
866 4 0.00
868 2 0.00
869 1 0.00
871 1 0.00
872 3 0.00
875 1 0.00
876 190 0.09
877 4 0.00
879 2 0.00
881 1 0.00
884 1 0.00
885 1 0.00
886 14 0.01
887 482 0.24
888 132 0.07
889 1 0.00
891 1 0.00
894 1 0.00
895 1 0.00
897 2 0.00
899 2 0.00
900 287 0.14
901 513 0.25
902 54 0.03
903 198 0.10
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (897 bp):
TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
AATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCGATCGTCGGAACCCTAA
TGCCGCCGGTCAGGTTCTTCGGCGATGCTTCGGTGATGGTGCCCTGGTGAAGAAAAATGCGGCAC
CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGA
ATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCGATCGGGTCCCCCTCTG
CGTACTGCCAATCCTGCTACCCAACCCTCATCTCGGTCCAATCTTAGACTGGGAATGAACTCTGT
ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAG
ACGGGATGCGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTT
TTTAAATTTTTTCGAAAGAGTTTTGGCCCCAACTTGGTAGATGTGATCCTTG
Found at i:16391981 original size:26 final size:26
Alignment explanation
Indices: 16391945--16391997 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16391935 CCGGTCCGAT
*
16391945 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16391971 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16391997 C
1 C
16391998 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16393486 original size:26 final size:26
Alignment explanation
Indices: 16393448--16393500 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16393438 CCGGTCTGAT
16393448 CTTAGACTAGGAATGAACTACGTATG
1 CTTAGACTAGGAATGAACTACGTATG
* *
16393474 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTACGTATG
16393500 C
1 C
16393501 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACGTATG
Found at i:16393874 original size:660 final size:661
Alignment explanation
Indices: 16392557--16393878 Score: 2173
Period size: 660 Copynumber: 2.0 Consensus size: 661
16392547 AAGAGGGTGT
*
16392557 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
1 GAGTTCTCGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
16392622 AATCATGTGCGCACACCCCCCGGCCCACCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCT
66 AATCATGTGCGCACACCCCCCGGCCCACCCGATCACCGAAACCCCAATGCCGCCGGTCAGGTTCT
* * *** * * *
16392687 CCGATGATGCTTCGGCGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATTCTCGAGCCC
131 CCGACGATGCTACGGCGATGGTGCCCCGACCAAGAAAAATACGACACCAGCACATGCCCGAGCCC
* *
16392752 AGCATGTGCTGCCGAAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTA
196 AGCATGTGCTGCCGAAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAACTACATATGCTTA
*
16392817 GATTGGGAATGAACTCCGTATCCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCATTACGC
261 GACTGGGAATGAACTCCGTATCCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCATTACGC
*
16392882 CGGCCAGAGAGACGGGATGCGCAAATCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCT
326 CGGCCAGAGAGACGGGATGCGCAAACCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCT
16392947 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCT
391 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCT
* * **
16393012 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCG
456 TCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTGCG
* * * *
16393077 GTTCAAGATTTTTTAAGATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
521 GTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGCTTTGCCCCCAAACTTGGTAAACGTGATCCTT
* *
16393142 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGATC
586 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
*
16393207 GTTTGAAAAAA
651 ATTTGAAAAAA
16393218 GAGTTCTCGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
1 GAGTTCTCGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
*
16393283 CATCATGTGCGCACACCCCCCCTGGCCCACCCGATCACCGAAACCCCAATGCCGCCGGTCAGGTT
66 AATCATGTGCGCACA-CCCCCC-GGCCCACCCGATCACCGAAACCCCAATGCCGCCGGTCAGGTT
* * *
16393348 CTCCGGCGATGCTACGGTGATGGTGCCCCGACCAAGAAAAATGCGACACCAGCACATGCCCGAGC
129 CTCCGACGATGCTACGGCGATGGTGCCCCGACCAAGAAAAATACGACACCAGCACATGCCCGAGC
* * ** *
16393413 CCAGCGTGTGCTGCCG-AA-CCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTACGTATGCT
194 CCAGCATGTGCTGCCGAAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAACTACATATGCT
* *
16393476 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGTGGGCGGGCATTAC
259 TAGACTGGGAATGAACTCCGTATCCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCATTAC
*
16393541 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGT-GGTTTAGGCACAT
324 GCCGGCCAGAGAGACGGGATGCGCAAACCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACAT
*
16393605 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
389 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGC
**
16393670 CTTCACGTGAAGTTTTGTGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTG
454 CTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTG
* * * * *
16393735 TGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGGGCTTTGCCCCCAAACTTGGTAAATGTGATCC
519 CGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGCTTTGCCCCCAAACTTGGTAAACGTGATCC
*
16393800 TTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
584 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
16393865 CCATTTGAAAAAA
649 CCATTTGAAAAAA
16393878 G
1 G
16393879 TGTCCCCATT
Statistics
Matches: 611, Mismatches: 48, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
660 267 0.44
661 228 0.37
662 8 0.01
663 108 0.18
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (661 bp):
GAGTTCTCGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
AATCATGTGCGCACACCCCCCGGCCCACCCGATCACCGAAACCCCAATGCCGCCGGTCAGGTTCT
CCGACGATGCTACGGCGATGGTGCCCCGACCAAGAAAAATACGACACCAGCACATGCCCGAGCCC
AGCATGTGCTGCCGAAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAACTACATATGCTTA
GACTGGGAATGAACTCCGTATCCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCATTACGC
CGGCCAGAGAGACGGGATGCGCAAACCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCT
TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCT
TCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTGCG
GTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGCTTTGCCCCCAAACTTGGTAAACGTGATCCTT
GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
ATTTGAAAAAA
Found at i:16394214 original size:26 final size:26
Alignment explanation
Indices: 16394185--16394234 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16394175 GTCCGATCTC
* *
16394185 AGACTGGGAGTGAACTCCGTATGCTT
1 AGACAGGGAATGAACTCCGTATGCTT
16394211 AGACAGGGAATGAACTCCGTATGC
1 AGACAGGGAATGAACTCCGTATGC
16394235 CTAATTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (26 bp):
AGACAGGGAATGAACTCCGTATGCTT
Found at i:16394561 original size:157 final size:160
Alignment explanation
Indices: 16394209--16394582 Score: 474
Period size: 157 Copynumber: 2.4 Consensus size: 160
16394199 CTCCGTATGC
* *
16394209 TTAGACA-GGGAATGAACTCCGTATGCCTAATTCAACCCACGAAACGAACGAGCGGGCGCTCAGC
1 TTAGACATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGAGCGGGCGCTCAGC
* *
16394273 CGACCAGAGGGGTAGGATGCGCAAGCCAGGGATCGGTTGGGACCCCCTCTGCGTGCTGTCGATCC
66 CGACCAGAGGGGTAGGATGCACAAGCCAGGGATCGGTTGGGACCCCCTCTACGTGCTGTCGATCC
* *
16394338 TGCTACCACAACCCTCGGTCTTGTCTGATC
131 TGCTACCACAACCCTCGGTCTCGTCTGATA
* *
16394368 TTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 TTAGACATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGAGCGGGCGCTCAGC
* * *
16394432 CGGCCAGAGGGGT-GGATGCACAAGCCGGGGATC-GTTGGGTCCCCCTCTACGTGCTG-CTGATC
66 CGACCAGAGGGGTAGGATGCACAAGCCAGGGATCGGTTGGGACCCCCTCTACGTGCTGTC-GATC
* * * *
16394494 TTGCTGCCGCAACCCTTGGTC-CGATCTGATA
130 CTGCTACCACAACCCTCGGTCTCG-TCTGATA
* * * * * * * *
16394525 TTAGA-TTGGGAATGAAGTTCGTATACCTAAGCCAACCGATGAAACAAGCGAGCGGGCG
1 TTAGACATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGAGCGGGCG
16394583 GGTGGGCACT
Statistics
Matches: 187, Mismatches: 24, Indels: 10
0.85 0.11 0.05
Matches are distributed among these distances:
156 3 0.02
157 95 0.51
158 18 0.10
159 71 0.38
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (160 bp):
TTAGACATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGAGCGGGCGCTCAGC
CGACCAGAGGGGTAGGATGCACAAGCCAGGGATCGGTTGGGACCCCCTCTACGTGCTGTCGATCC
TGCTACCACAACCCTCGGTCTCGTCTGATA
Found at i:16395253 original size:26 final size:26
Alignment explanation
Indices: 16395224--16395279 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
16395214 CCGATCTGAT
* *
16395224 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16395250 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16395276 CTTA
1 CTTA
16395280 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16396861 original size:26 final size:26
Alignment explanation
Indices: 16396810--16396862 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16396800 CTGATCCGAT
*
16396810 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16396836 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
16396862 C
1 C
16396863 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16397742 original size:26 final size:26
Alignment explanation
Indices: 16397713--16397765 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16397703 CTGGTCCGAT
*
16397713 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
*
16397739 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
16397765 C
1 C
16397766 CTAAGTCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGAATAGGAATGAACTCCGTATG
Found at i:16398667 original size:26 final size:26
Alignment explanation
Indices: 16398638--16398690 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16398628 CTGGTCCGAT
*
16398638 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16398664 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16398690 C
1 C
16398691 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16399548 original size:25 final size:26
Alignment explanation
Indices: 16399520--16399571 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16399510 TTGGTCTGAT
*
16399520 CTTAGATT-GGAATGAACTCTGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
16399545 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
16399571 C
1 C
16399572 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:16400461 original size:26 final size:26
Alignment explanation
Indices: 16400422--16400474 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16400412 CTGGTCTGAT
*
16400422 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16400448 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16400474 C
1 C
16400475 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16400953 original size:903 final size:902
Alignment explanation
Indices: 16396067--16406645 Score: 13321
Period size: 902 Copynumber: 11.8 Consensus size: 902
16396057 GCCCAGCATG
* * * * * *
16396067 TGCTATCGTAAACCTCAGTCTGGTCTGATCTAAGACTGGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTATCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
16396132 CCGATGAAATGAGCGGGTGGGC--GGGCGGGCATTACGCCAGCCAAAGAGACGGGATGCGCAAGC
66 CCGACGAAACGAGCGGGCGGGCGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
16396195 CGTGGATTGATAGGGTGGTAGGTGGGTTT-GTGCACATCTTCATATTTCTGCATGCCAATGCTAT
131 CGTGGATCGATAGGGTGGTAGGTGGGTTTAG-GCACATCTTCATATTTCTGCATGCCAATGCCAT
*
16396259 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACG
195 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
16396324 ACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTT
260 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * * * * *
16396389 GGAAAGAGTTTTGGCCCCAAACATGGTAGGCGTGATTCGTGTATTTTTGTTGGTATGCACAAAAA
325 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
16396454 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGTAAAATGTGTCCCCATTTCA
390 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
16396519 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
455 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
16396584 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATAAAAGGGCCAAGTACCAGCACCCATCGCACATC
520 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
16396649 ATGTGCGCACA-CCCGCCGGCCCCCCCGATCGCCGGAACCCTAATGCCACCGGTCAGGTTCT-CT
585 ATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
** * **
16396712 AGCGATGCTTTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTAAGCCCAG
650 A-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* *
16396777 CATGTGCTG-TCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
714 CATGTGCTGCT-GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
** * * * ** *
16396841 ACTGGGAATGAACTCTATATGCCTAAGTCAACCGACGAAACGAGCGTGCGGGTGTTCAATCAGCC
778 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
** * * * * *
16396906 AGAGGGGCAAGATGCACAAGCCGGGGATCGGTCGAGTCCCCCTCTGCGTGCTACCAATCT
843 AGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
** * * * * * *
16396966 TGCTGCCACAACCCTCAG-CTGATCCGATCTTAGACTTGGAATGAACTTCATATGCCTAAGCCAA
1 TGCTATCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
16397030 CCGACTAAACGAGCGGGCGGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGGGCGGGC-GG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
16397095 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
** ** * *
16397160 TTTTTATTTCTTGTAAATTTGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGTC
194 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
16397225 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTTGGGATTTTTTAAAATTTTTT
259 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *
16397290 CAGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGTACAAAA
324 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
16397355 AAATTTAGCTGAAAATTCGAAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
389 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
16397420 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
16397485 TTCTCAAGGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * *
16397550 CATGTGCACACACCCCGCCGACCCCCCCGATAGTCGGAACCCCAATGCCGTCGATCAGGTTCTCC
584 CATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * *
16397615 GACGATGCTCCGACGATGGTGCCCC-AGCAAAGAAAAATGTGGCACCAGTACCTGCCCGAGCCCA
649 GACGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * ** *
16397679 GCATCTGTTGCCGCAATGCTCGGTCTGGTCCGATCTTAGAATGGGAATGAACTCCGTATGCTTAG
713 GCATGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * *
16397744 ACTAGGAATGAACTCCGTATGCCTAAGTCGACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCT
778 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
** * ** *
16397809 AGAGGGGCGGGATGCAAAAGTCGATGATCGGTCGGGTGCCTCTCTACGTGCTACCGATGCTGCTG
843 AGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGT--C-C-C--C---CT--C--TGC-G-TG
*
16397874 CCGTAACCATCGGTCGC
893 -C-T-A-C--CGATC-C
* * * *
16397891 GTCCTACTACCGTAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
1 -TGCTA-T--CGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
16397956 CCAACCGACGAAACGAACGGGCGGGC--GGGCAGGCTCTACGTCGGCCAGGGAGACGGGATGCGC
62 CCAACCGACGAAACGAGCGGGCGGGCGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * *
16398019 AAGCCGTGGATCGTTAGGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTCTACGTGCCAATGC
127 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * *
16398084 CATTTTTATGACTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAG
192 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* **
16398149 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTCAAAAATTTT
257 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * * *
16398214 TTCAGCAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAT
322 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
16398279 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATT
387 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
16398344 TCAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
452 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
16398409 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCGCAC
517 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
16398474 ATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
582 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
*
16398538 CCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCC
647 CCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * *
16398603 ATCATGTGCTACCGAAACCCTCGGTCTGGTCCGATCTTAGACTGTGAATGAACTCCGTATGCTTA
712 AGCATGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
*
16398668 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGC
777 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * **
16398733 TAGAGGGGCGGGATACGCAAGCCGGGGATCGACCGGGTCCCCCTCTATGTGCTACCGATCC
842 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
* ** * * *
16398794 TGCTATCGTAACCCTTGGTCCGGTCCGATCTTAGACTCGGAATGAACTCCGTATCCCTAAGCCGA
1 TGCTATCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
16398859 CCGACGAAACGA----GCGGGC--AGGAGGGCAGTATGCCAGCTAGAGAGACGGGATGCGCAAGC
66 CCGACGAAACGAGCGGGCGGGCGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
16398918 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
131 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
** * **
16398983 TTCT-T-TATTGTAAATTCCTACAATGGTCCCTTAAGCCTTGTCGTGAAGTTTCATGGCAAGACG
196 TT-TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
16399046 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
260 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* ** * ** * **
16399111 AGAATCATTTTTGGCCTGAAACTTGGTAGACATGATCCTTGTATTTTCATTGGCATGCACAAAAA
325 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
16399176 AATTTAGCCAAAAACTCGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCC-TTTCC
390 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT-C
* * *
16399240 AGACACTTAAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTATGGGGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
16399304 TTCTCGAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * *
16399369 CATGTGCACACA-CCCCCCGACCCCCCGGATCGTCAGAACCCCAATGTCGCAGGTCAGG-T-T--
584 CATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
** * * **
16399429 --C--T--T-CGACGATGGTGCCCCGGTGAAAAAAAATGTGGCACCAGCACATGCTTGAGCCCAG
649 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * *
16399487 CATGTGCTG-TCGCAACCCTCAGTTTGGTCTGATCTTAGA-TTGGAATGAACTCTGTATGCTTAG
714 CATGTGCTGCT-GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * *
16399550 ATTGGGAATGAACTCCGTATGCCTAAGTCAACACATGAAACGAGCGTGCGGGCACTCAGCCGGCC
778 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * ** *
16399615 AGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCGGTGTGCTGTCGATCT
843 AGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * ** * * * *
16399675 TGCTACCGCAACCCTCAATCTGGTCTAATCTTAGACTAGAAATGAACTCGGTATGCCTAAACCAA
1 TGCTATCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
16399740 CCGACAAAACGAGCGGGCGGGCGGGAGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAA
66 CCGACGAAACGAGCGGGCGGGC-GG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *** *
16399805 GCCCTGGATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCATTGCCA
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
16399870 TTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
194 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** ** *
16399935 GACTCGTTTTTTATTTTCCACGATTTTCAAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTT
259 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *
16400000 CGGAAGGAGTTTTGGCTCTAAACTTGGTAAACGTGACCCTTGTATTTTT-TTGGCATGCACAAAA
324 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
16400064 AAATTCAGCTAAAAACTCAAAGTGTACATGATTTTGTGACCATTTGAAAAAAGTGTCCCCAGTTC
389 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
16400129 AGACACTTTAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAATACTCTTTAAGGGGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
16400194 TTCTCGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
16400259 CATGTGCACACACCCCCCCAGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTTAGGTTCTCC
584 CATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * *
16400324 GACGATGCTCCGACAATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACTTGCCCGAGCCCAT
649 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* *
16400389 CATGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGTGAATGAACTCCGTATGCTTAGA
714 CATGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * *
16400454 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGTCGGCTA
779 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * **
16400519 GAGGGGCGGGATGCACAAGCCGGAGATCGACCGGGTCCCCCTCTATGTGCTACCGATCC
844 GAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
* ** * * *
16400578 TGCTATCGTAACCCTTGGTCCGGTCTGATCTTAGACTCGGAATGAACTCCGTATGCCTAAGCCGA
1 TGCTATCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
16400643 CCGACGAAACGAGCGGGCGGGCAGGGGGTGGGCACTACGCCTGCCAGAGAGACGGGATGCGCAAG
66 CCGACGAAACGAGCGGGCGGGC-GGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
16400708 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGTCACATCTTCATATTTATGCATGCCAGTGCCAT
130 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
16400773 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
195 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
16400838 ACTCGTTTTCTATTTTTCATGATTTTT-AAATCTTTTTAAGGTTCGGGATTTTTTAAAATTTTTT
260 ACTCGTTTTCTATTTTTCACGATTTTTGAAA-CTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *
16400902 TGGAAGGCGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
324 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
16400967 ACATTCAGCCAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
389 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
16401032 AGGCACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
16401096 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACACATCGTACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** * * *
16401161 CATGTGCGCACACCCTTCCGG-GCCCCCGATCGCCGGAACCCTAATGCCGCTGGTCAGGTTCTCC
584 CATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
** * * *
16401225 GGTGATGCTCCGACGATGGTGCCTCGAC-AAGAAAAATACGGCACCAGCACATGCCCGAGCCTAG
649 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * * ** * *
16401289 CATCTGCTACCGTAACCCTTGGTCCAGTCCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGA
714 CATGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* ** * *
16401354 CTGGGAATGAACCCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCACTCAGCCGTCCA
779 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* ** * ** * **
16401419 AAGGGATGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGTTGTCGATCC
844 GAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
** * ** ** * * *
16401478 TGCTGCCGCAACACTTGGTTTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCTAG
1 TGCTATCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
16401543 CCGACGAAACGAGCGGGCGGGC--GGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAGT
66 CCGACGAAACGAGCGGGCGGGCGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* ***
16401606 CGTGGATCGATAGGGTGGTAGGTGGTTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATT
131 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
16401671 TTCATGGCTTGTAAATTCATACAATGGTACCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
196 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
16401736 CTCGTTTTCTCTTTTTCACGATTTTTGAAACTTTTTTCGATTAGGGATTTTTTAAACTTTTTTCG
261 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* ** *
16401801 GAAAGAGTTTTCTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGAATGC-CTAAAAA
326 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAA
*
16401865 AATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
390 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * * *
16401930 GACACTTTATTGCCTACTAGCAGCAAACCTGTAAAATCTCAAATGTTTTTTAAGGGGGTGTGAGT
455 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
16401995 TCTCGAGGTTTGATAAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGTACATC
520 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* ** * *
16402060 AAGTGCGCACA-CCCCCCGGCCCCCCCGATCATCAGAACCCCAATTCC-CCGGTCAGGTTCTCCG
585 ATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * *
16402123 ACGATGCTCC-AGGGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
650 ACGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
16402187 CATGTGCTACCGTAA-CCT-GTAGTCTGGTCCGATCTTAGACTGGGAATGAACTCC----G--T-
714 CATGTGCTGCTGCAACCCTCG--GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
16402243 -AC-------G----CC-TATG-C-----CAACCCACAAAATGAGCGTGCGGGCGCTCAACCGGC
777 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* *
16402289 CAGAGGGGCGGGAT-CTGCAAGCCGGGGATC-AGTCGGGTCCCCGTCTGCGTGCTACCAATCC
842 CAGAGGGGCGGGATGC-GCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTACCGATCC
* ** * *
16402350 TGCTATCACAAAACTCAGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTATCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
16402415 CCGATGAAATGTGCGGGCGGGCGGGCGGTCGGCCACTACGTCAGCCAGAGAGACGGGATACGCAA
66 CCGACGAAACGAGCGGGCGGGCGGG-GG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * * *
16402480 GCCATGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTGATATTTTTGCGTGCCAATGCTA
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
16402545 TTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGAC
194 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
16402610 GACTCGTTTTCTCTTTTTCATGATTTTTGAAACTTTTTTCGGTTAGGGATTTTTTAAACTTTTTT
259 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* ** * *
16402675 CGGAAAGAGTTTTCTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGAATGC-CTAAA
324 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAA
* *
16402739 AAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTT
388 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
16402804 GAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGGTGTGA
453 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
16402869 GTTCTCGAGGTTTGATAAGGGATAGAGGGCCTATAGAAGGGCCAAGTACCAGCACCCATCGCACA
518 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
16402934 TCAAGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATTCC-CCGGTCAGGTTCTC
583 TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * *
16402998 TG-GGATGCTCC-AGGGATGGTGCCCC-AGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
648 CGACGATGCTCCGA-CGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* *
16403060 CAGCATGTGCTGCTGTAA-ACT--G-C--G---G-TC-----C---G-AT---CT--G-AT-CTT
711 CAGCATGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * ** * *
16403099 AGACTGGGAATGAACTCCATACGCCTAAGCCAACCCAAAAAATGAGCGTGCGGGCGCTCAACCGG
776 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * *
16403164 CCAGAGGGGTGGGATGCGCAAGCCGGGGATC-AGTCGGGTCCCCGTCTGCGTGCTACCAATCC
841 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTACCGATCC
* * ** * *
16403226 TACTATCACAAAACTCAGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTATCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
16403291 TCGATGAAATGTGCGGGCAGGTGGGCGGGCGGGCGGTCGGGCACTACGTCGGCCAAAGAGATGGG
66 CCGACGAAA----C--G-A-GCGGGCGGGCGGG-GG-CGGGCACTACGCCGGCCAGAGAGACGGG
* * * * * *
16403356 ATACGTAAGCCATGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTGATATTTTTGCATGC
121 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* * *
16403421 CAATGCTATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTAAT
186 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* ** **
16403486 GGCAAGACGACTCGTTTTCTATTTTCCACGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTAA
251 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAA
* **
16403551 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACATTTCTTAGACGTGATCCTTGTATTTTTGTTGGC
316 AATTTTTTCGGAAGGAGTTTTGGCCCCAAAC--TTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * *
16403616 ATGCACAAAATAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATG
379 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
16403681 TCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAG
444 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
16403746 GGGGTGTGAGTTCTTGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
509 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * *
16403811 CATCGCACATCATGTGCGCACACCCCCCCGG-GCCCCCGATCGTCGAAACCCCAATGCCGTCGGT
574 CATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGT
* * ** * *
16403875 CAAGTTCTCCGGCGATGCTCCGGTGATGGTACCCCGATGAAGAAAAATGCGGCACCAGCACATGC
639 CAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* * * * ** * ** * * *
16403940 TCGAGCCTAGCATCTGCT-ATGGCATTCCTCGATCCAGTTCGATTTTAGACTGGGAATAAACTCC
704 CCGAGCCCAGCATGTGCTGCT-GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCC
* * * * * *
16404004 GTAAGCTTAGACTAGGAATGAACTCCATACGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGC
768 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * ** * *
16404069 TCAGTCGGCCAGAGGGGCGAGATGCACAAGCCACGGATCGGTCGGGTCCCCCTCTGCGTGCTACT
833 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACC
16404134 GATCC
898 GATCC
* * * *
16404139 TGCT-GCTGCAACCCTCGGTCCGGCCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTATC-GCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
16404203 ACCGATGAAACGAGCGGGCGGGTGGGCGGACGGGCACTACGCCGGCCAGAGAGACCGGATGCGCA
65 ACCGACGAAACGAGCGGGCGGGCGGG-GG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
16404268 AGCCATGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
128 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * *
16404333 ATTTTTATGGCTTGGAAATTCATACAATGGT-ACTTAAGCCTTGACGTGAAGTTTCGTGGCAAGA
193 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * **
16404397 CGACTCGTTTTCTATTTTTCACGATTTGT-AACACTTTTTACAGTTCAAGATTTTTTAAAATTTT
258 CGACTCGTTTTCTATTTTTCACGATTTTTGAA-ACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* *
16404461 TTCGGAAGAAGTTTTGGCCCCAAA-TATGGTAGACGTGGTCCTTGTATTTTTGTTGGCATGCACA
322 TTCGGAAGGAGTTTTGGCCCCAAACT-TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
16404525 AAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
386 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
16404590 CTCAGACACTTTATTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
451 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
16404655 GAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACT
516 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* ** ** *
16404720 CA-CGACGTGCGCACACCCCTGCGGCCCCCCCGATCATCGGAACCCTAATGCCGCCGGTC--G--
581 CATC-ATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTT
* * * * *
16404780 ----G--G-TTCTCCGACGATGGTGCCCCGGCAAAGAAAAATGCGACACCAGCACATGCTCGAGC
645 CTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * * *
16404838 CCAGCATGTGCTGCCGCAACCCTCAGTCTGGTCTGATCTGAGACTGAGAATGAACTTCGTATGCT
710 CCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
16404903 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAATGAGCGTGCGAGCGCTCAGCCG
775 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * **
16404968 GCTAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTATAGATCC
840 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * * *
16405031 TACTGTCGTAACCCTCGGTCCAGTCCGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTATCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * *
16405096 TCGACGGAACAAACGGACGGGCCGGCGAGCGGGCACTACGCCGGCCAGAGAGATGGGATGCACAA
66 CCGACGAAACGAGCGGGCGGG-CGG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *** *
16405161 TCCGTGTATCGATAGGGTGGTAGG-GGGATTTAAGCACATCTTCATATTTCTATGTGCCAATACC
129 GCCGTGGATCGATAGGGTGGTAGGTGGG-TTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
16405225 ATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTTCATGGAAAGA
193 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
16405290 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCTGGATTTTTTACAATTTTT
258 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* *
16405355 TCGGAAGAAGTTTTGGCACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
323 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
16405420 ACAATTCAGCTAAAAACTCAAAATGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
388 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
16405485 CAGACACTTTAATGGCTATTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
453 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
16405550 GTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAGGTACCAGCACCCATCGCACA
518 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
16405614 TCATGTGCACACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATACTGCCGGTCAGGTTCTC
583 TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * *
16405678 CGGCGATGCT-C--C------G----G-CGAAGAAAAATGCGGCACCAACACATGCCCTAGCCTA
648 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * *
16405729 GCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAG
713 GCATGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* *
16405794 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAGCCGGCC
778 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * *** *
16405859 AAAGGGACAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTTGATTC
843 AGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
* * ** * * *
16405919 TGGTA-CTGCAACCCTCAGTTCGGTTTGATCTTAGACTGAGAATGAACTCTGTATGACTAAGCCA
1 TGCTATC-GCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
16405983 ACCGATGAAACGAGCGGGCGGGCGGGCAGATGGGCGGACGGGCGGGCGGGCACTACGTCGGCCAG
65 ACCGACGAAACGA--------GCGGGC------G-GG-C-GG-GGGCGGGCACTACGCCGGCCAG
* * * * *
16406048 AGAGACGGGATGCGCAAGGCGTGGATCGATA-GGTGGTGGGTGAGTTTAGGTACATCTTCTTATT
112 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * *
16406112 TCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCATCACGCG
177 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * ** * * *
16406177 AAGTTTCATGGCAAGACAACTCATTTTTTATTTTTCACGATTTTCAAAACTTTTTGCGATTCTGG
242 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGG
** * * * * *
16406242 ATTTTTTAAAATTTTTTCAAAATGAGTTTGGGTCCCAAACCTGGTAGACGTGATCCTTGTATTTC
307 ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* *
16406307 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTATAAGATTTTGTGACCATTTGAA
372 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* * *
16406372 AAAAATGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAAAGCT
437 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * *
16406437 CTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAATTAC
502 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * *
16406502 CAGCACCCATCACACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGCCAGAACCCCAATGC
567 CAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGC
* * *
16406567 CGCCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATGCGGCACCAG
632 CGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
16406632 CACATGCCCGAGCC
697 CACATGCCCGAGCC
16406646 TGTAAATTCA
Statistics
Matches: 8468, Mismatches: 999, Indels: 406
0.86 0.10 0.04
Matches are distributed among these distances:
854 2 0.00
856 1 0.00
857 2 0.00
858 3 0.00
861 1 0.00
865 1 0.00
866 2 0.00
867 1 0.00
869 2 0.00
870 4 0.00
871 2 0.00
872 152 0.02
873 1 0.00
874 1 0.00
875 2 0.00
876 714 0.08
877 50 0.01
878 4 0.00
879 2 0.00
881 195 0.02
882 80 0.01
883 2 0.00
884 249 0.03
885 30 0.00
886 250 0.03
887 64 0.01
888 258 0.03
889 212 0.03
890 239 0.03
891 78 0.01
892 448 0.05
893 420 0.05
894 272 0.03
895 102 0.01
896 9 0.00
897 418 0.05
898 243 0.03
899 82 0.01
900 263 0.03
901 72 0.01
902 1134 0.13
903 960 0.11
904 209 0.02
905 188 0.02
906 6 0.00
907 3 0.00
908 2 0.00
909 5 0.00
910 2 0.00
911 2 0.00
912 5 0.00
913 173 0.02
914 3 0.00
916 5 0.00
917 1 0.00
918 3 0.00
919 35 0.00
920 1 0.00
921 2 0.00
922 2 0.00
923 1 0.00
924 3 0.00
925 242 0.03
926 479 0.06
929 9 0.00
930 60 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
TGCTATCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
TGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
GGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
Found at i:16401358 original size:26 final size:26
Alignment explanation
Indices: 16401322--16401374 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16401312 CCAGTCCGAT
* * *
16401322 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
16401348 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
16401374 C
1 C
16401375 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:16402687 original size:25 final size:26
Alignment explanation
Indices: 16402631--16402687 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
16402621 TCTTTTTCAT
** *
16402631 GATTTTTGAAACTTTTTTCGGTTAGG
1 GATTTTTGAAACTTTTTTCGGAAAGA
*
16402657 GATTTTTTAAACTTTTTTCGGAAAGA
1 GATTTTTGAAACTTTTTTCGGAAAGA
16402683 G-TTTT
1 GATTTT
16402688 CTCCCCAAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
25 4 0.15
26 23 0.85
ACGTcount: A:0.23, C:0.07, G:0.19, T:0.51
Consensus pattern (26 bp):
GATTTTTGAAACTTTTTTCGGAAAGA
Found at i:16404914 original size:26 final size:26
Alignment explanation
Indices: 16404878--16404927 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16404868 GTCTGATCTG
*
16404878 AGACTGAGAATGAACTTCGTATGCTT
1 AGACTGAGAATGAACTCCGTATGCTT
*
16404904 AGACTGGGAATGAACTCCGTATGC
1 AGACTGAGAATGAACTCCGTATGC
16404928 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (26 bp):
AGACTGAGAATGAACTCCGTATGCTT
Found at i:16405799 original size:26 final size:26
Alignment explanation
Indices: 16405763--16405815 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16405753 CCGGTCCGAT
*
16405763 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16405789 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16405815 C
1 C
16405816 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16407228 original size:26 final size:26
Alignment explanation
Indices: 16407192--16407243 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16407182 CAATCCAATG
*
16407192 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
16407218 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
16407244 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:16408518 original size:904 final size:897
Alignment explanation
Indices: 16406645--16408937 Score: 3389
Period size: 904 Copynumber: 2.5 Consensus size: 897
16406635 ATGCCCGAGC
* * * *
16406645 CTGTAAATTCATACAATGGTTCCTTAAGCCTTGACGTGAAGATTCATGGCAAGACGACTCATTTT
1 CTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * * *
16406710 CTATTTTTCACGATTTTCGAAACTTTTTACAGTTCGAGATTTTTTCAAAATTTTTTAGAAGGAGT
66 CTATTTTTCACGATTTTCGAAACTTTTTGCA-TTTGGGATTTTTTTAAAATTTTTTGGAAGGAGT
** * *
16406775 TTTCACCCCAAACTTGGCAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCT
130 TTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCT
* * *
16406840 AAAAACTCGAGGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCAGTTCAGACACTTTA
195 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
16406905 TTGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGT
260 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGT
* *
16406970 TTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA
325 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * * *
16407035 CACCCCCCTCCTGGCCCCCTCGATTGCCAGAACCCCAATGCCACCGGTCAGGTTCTTCGGCAATG
390 TA--CCCC-CC-GGCCCCCTCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
* *
16407100 CTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGTCACCAGCACATGCCCGAGCCCAGCATGTGC
451 CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * **
16407165 TACCGCAACCCTCGGTCCAATCCAATGTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAA
516 TACCGCAACCCTCGGTCCAATCCAATCTTAGACTGGGAATGAACTCCACATGCTTAGACTGGGAA
* * * *
16407230 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGTCGGCTAGAGGGGC
581 TGAACTCCGTATGCCTAAGTCAACCCACGAAACCAACGTGCGAGCGCTCAGACGGCCAGAGGGGC
** * * **
16407295 AGGATTCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTATTGCAACC
646 AGGATTCGCAAGCCAGGGATCGATCGGGTCCCCCTCTGCGTGCTACCAATCCTGCTACCGCAACC
** *
16407360 CTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGATGAAACGAG
711 CTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACTGACGAAACGAG
* *
16407425 GGGACAGGCGGGAGGGCACTATGTCGGCCAGAGAGAAGGGATGCGCAAGCCGTGGATCGATAGGG
776 GGGACAGGCGGGAGGGCACTACGCCGGCCAGAGAGAAGGGATGCGCAAGCCGTGGATCGATAGGG
*
16407490 TGGTAGGTGAGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
841 TGGCAGGTGAGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
* *
16407547 CTTGTAAATTCATACAATGGTCCCTTGAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTT
1 C-TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* *
16407612 TCTATTTTTCACGATTTTCAAAACTTTTTGCTATTTGGGATTTTTTTAAAATTTTTTCGGATGGA
65 TCTATTTTTCACGATTTTCGAAACTTTTTGC-ATTTGGGATTTTTTTAAAATTTTTT-GGAAGGA
16407677 GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAG
128 GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAG
*
16407742 CTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
193 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
16407807 TAATGGCAACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
258 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
* * * *
16407872 GTTCGACGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCGTCGCACATCATGTGCG
323 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * *
16407937 GATACCCCCCGGCCCCCTCGATCGCTGGAACCCCAATGCCGTCGGTTAGGTTCTCCGGCGATGCT
388 CATACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCT
* * *
16408002 CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTT
453 CCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA
* ** * *
16408067 TCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAGTGAACTCCACATGCTTAGACTGGGAATG
518 CCGCAACCCTCGGTCCAATCCAATCTTAGACTGGGAATGAACTCCACATGCTTAGACTGGGAATG
* *
16408132 AACTCCGTATGCCTAAGTCAACCCACGAAACCAGCGTGCGAGCGCTCAGAGGGCCAGAGGGGC-G
583 AACTCCGTATGCCTAAGTCAACCCACGAAACCAACGTGCGAGCGCTCAGACGGCCAGAGGGGCAG
* * *
16408196 AGATGT-GCAAGCCAGGGATCGATCGGGTCCCCCTCTGTGTGCTACCGAT-CTGGCTGCCGCAAC
648 -GAT-TCGCAAGCCAGGGATCGATCGGGTCCCCCTCTGCGTGCTACCAATCCT-GCTACCGCAAC
** * * *
16408259 CCTCGGTCTGGTCTGATCTTAGACTGTGAATGAACTCCCTATGCCTAAGCCAACTGACGAAATGA
710 CCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACTGACGAAACG-
* * * *
16408324 ACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACA-GGATGCGCAAGCCGTGGATTG
774 A--GG-GGACAGGCGGGAGGGCACTACGCCGGCCAGAGAGA-AGGGATGCGCAAGCCGTGGATCG
* * **
16408388 ATAGGGTGGCAGGTGGGTTTAGGTACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGG
835 ATAGGGTGGCAGGTGAGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
* *
16408451 ACTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTT
1 -CTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * *
16408516 TCTATTTTTCACGATTTTTGAAACTTTTATG-GTTTGGGA-TTTTTTAAAATTTGTTTGAAAGGA
65 TCTATTTTTCACGATTTTCGAAACTTTT-TGCATTTGGGATTTTTTTAAAATTT-TTTGGAAGGA
* * *
16408579 GTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGC-ACAAAAAATTCAG
128 GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAG
16408643 CTAAAAACTC-ATAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
193 CTAAAAACTCGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
16408707 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
257 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA
* * *
16408772 GGTTTGATGAGGGATTGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCAAGTGC
322 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* *
16408837 GCATACCCCCCGGCCCCC-CGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
387 GCATACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC
* ** *
16408901 TCTGGCGATGGTGCCCCGGTGAAGAAAAATGTGGCAC
452 TCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCAC
16408938 ATCTTGATAT
Statistics
Matches: 1255, Mismatches: 121, Indels: 32
0.89 0.09 0.02
Matches are distributed among these distances:
899 3 0.00
900 398 0.32
901 215 0.17
902 72 0.06
903 119 0.09
904 444 0.35
905 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
CTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCACGATTTTCGAAACTTTTTGCATTTGGGATTTTTTTAAAATTTTTTGGAAGGAGTT
TTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAT
ACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCG
GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCG
CAACCCTCGGTCCAATCCAATCTTAGACTGGGAATGAACTCCACATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACCAACGTGCGAGCGCTCAGACGGCCAGAGGGGCAGGAT
TCGCAAGCCAGGGATCGATCGGGTCCCCCTCTGCGTGCTACCAATCCTGCTACCGCAACCCTCAA
TCCGGTCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACTGACGAAACGAGGGGAC
AGGCGGGAGGGCACTACGCCGGCCAGAGAGAAGGGATGCGCAAGCCGTGGATCGATAGGGTGGCA
GGTGAGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
Found at i:16410225 original size:26 final size:26
Alignment explanation
Indices: 16410174--16410226 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16410164 CCTGTCCGAT
* ***
16410174 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACAGGGAATGAACTCCATATG
16410200 CTTAGACAGGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
16410226 C
1 C
16410227 CGTAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:16411137 original size:26 final size:26
Alignment explanation
Indices: 16411085--16411137 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16411075 CCGGTCCGAT
* *
16411085 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCACATG
*
16411111 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCACATG
16411137 C
1 C
16411138 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:16411809 original size:902 final size:893
Alignment explanation
Indices: 16409470--16412866 Score: 4413
Period size: 864 Copynumber: 3.8 Consensus size: 893
16409460 GTGCTGCCGT
* * * * * *
16409470 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCCTACCGACGAAA
1 AACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAA
16409535 CGAGCA---GA-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
66 CGAGCAGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGAC-GGATGCGCAAGCCGTGGATCGAT
* * * *
16409596 AGGGTGGTAGATTGGTTTCGGCACATCTTCATATTTCTGCATGCCAATGGCATTTTTATGGCTTG
130 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
*
16409661 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTA
195 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * * * *
16409726 TTTTTCACGATTTTTGAAA-ATTTTTACGGTTTGGGATTATTTAAAATTTTTTCAAAAGGAGTTT
260 TTTTTCAC-AATTTTCAAACATTTTT-CGGTTCGAGATTTTTTAAAATTTTTT-AGAAGGAGTTT
*
16409790 TGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAGAATTCAGCTAA
322 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * * * *
16409854 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAGAAAACTGTCCCTATTTCAAACACTTTAAT
387 AAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
** * * *
16409919 ATCTATTGGTAGCAAACCTGTAAAATCTCAAATGCTCGTTAAGGGGGTGTGAGTTCTCGAGGTTT
452 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* *
16409984 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCACACA
517 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * *
16410049 -CCCCCCGACCCCCCCAATCGTCGGAACCCTAAT---G-CTGTCA-G----TC-A-GGTTCTCCG
582 CCCCCCCGACCCCCCCGATC-T-GGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGATGCTCCG
*
16410102 GCGA---T-----------GAAAAATGCGGCACCAACACATGCCCGACCCCAGCATGTGCTGCCG
645 GCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCG
* * *
16410153 CAACCCTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACAGGGAATGAAC
710 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC-TTCTATGCTTAGACTGGGAATGAAC
* * * * * *
16410218 TCCATATGCCGT-AGTCAACCCATGAAACGAGCGTGCAGGTGCTCAGCCGACAAGAGGGGTGGGA
774 TCCGTATGCC-TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCG-CTAGAGGGGCGAGA
* * * *
16410282 TGCGCAAGCTGGGGATC-AGCCCGATCCCCCTCTGCGTGCTGTCGATCCTGCTATCGC
837 TGCGCAAGCCGGGGATCGA-CCGGATCCCCCTCTGCGTGCTGACGATCCTACTATCGC
* *
16410339 AACCCTCGGTTTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAA
1 AACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAA
* * * *
16410404 CGAGCGGGCGGGCGGGCGGGCGGGCAGGCACTATGCCGGACAGAGAGACGAGATGCGCAAGCCGT
66 CGA----GCAGGCGAGCGGGC--G--GGCACTACGCCGGCCAGAGAGACG-GATGCGCAAGCCGT
* * * *
16410469 GGATCGATAGGGTGATAGGTGGGTTTCGGGACATCTTCATATTTCTACATGCCAATGCCATTTTT
122 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* *
16410534 ATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGACGACTC
187 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
16410599 GTTTTCTATTTTTCACAATTTTCAAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
252 GTTTTCTATTTTTCACAATTTTCAAACATTTTT-CGGTTCGAGATTTTTTAAAATTTTTT-AGAA
*
16410664 GGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
315 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
16410729 CAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
380 CAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
16410794 CTTTAATGGCTACTGGTAGTAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTC
445 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * * *
16410859 AAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTCCAGCACCCATCACACATCATGT
510 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* *
16410924 GCGCACACCGCCCCCTGACCCCCCCGATCATTGGAACCCCCAATGCCGTCGGTCAGGTTCTTCGG
575 GCGCACACC-CCCCC-GACCCCCCCGATC--TGGAA-CCCCAATGCCGCCGGTCAGGTTCTTCGA
* * ** * *
16410989 CGATGCTCCGGCGGTGGTGCCCCGACAAAGAAAAATGTGGCACCAACACATGCTTGAGCCTAGTA
635 CGATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCA
* * *
16411054 TGTGCTGTCGTAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCATATGCTTAGACT
700 TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTC-TATGCTTAGACT
* *
16411119 GGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGCCAGCTAGA
764 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC-GCTAGA
* * * * * * **
16411184 AGGGCAAGATGTGCAAGCCGGGGATCGACCGGATCCCTCACTGCTTGCTGACGATCCTACTGCCG
828 GGGGCGAGATGCGCAAGCCGGGGATCGACCGGATCCCCCTCTGCGTGCTGACGATCCTACTATCG
16411249 C
893 C
* * *
16411250 AACCCTCAGTCTGATCCGATCTTAGTCTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAA
1 AACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAA
16411315 CGAGCAGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGCATGCGCAAGCCGTGGATCGAT
66 CGAGCAGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGG-ATGCGCAAGCCGTGGATCGAT
* * * *
16411380 AGGGTGGTAGGTGGGTTTAGGCACTTCTTCATATTTTTGCATGCCACTGCCATTTTTATGGCTTT
130 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
16411445 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT-TA
195 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
**
16411509 TTTTTCATGATTTTCGAAACATTTTGT-GGTTCGAGATTTTTTAAAATTTTTTAGAAGGAGTTTT
260 TTTTTCACAATTTTC-AAACATTTT-TCGGTTCGAGATTTTTTAAAATTTTTTAGAAGGAGTTTT
*
16411573 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTAAGCTAA
323 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAA
* *
16411638 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAAT
387 AAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
16411703 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
452 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* *
16411768 GATGATGGATAGGGGGCCCATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
517 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* ** * *
16411833 CCCCCCCGA-----TCG-TC-GGAACATCGATGCCGCCGGTCAGGTT-TTCCGACGATACTCCGG
582 CCCCCCCGACCCCCCCGATCTGGAACCCCAATGCCGCCGGTCAGGTTCTT-CGACGATGCTCCGG
*** *
16411890 CGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGC
646 CGATGGTGCCCCGACAAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGC
*
16411955 AA-CC-C--T-C-G---G-TC-----C-----A-G---TTCGAT-CTTAGACTGGGAATGAACTC
711 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCTATGCTTAGACTGGGAATGAACTC
* * *
16411995 CGTATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGTGCTCAGCCGGCTAGAGGGGCGAGATAC
776 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC-GCTAGAGGGGCGAGATGC
* * * * * *
16412060 GTAAGCCGGGGATTGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTATCGT
840 GCAAGCCGGGGATCGACCGGATCCCCCTCTGCGTGCTGACGATCCTACTATCGC
* * * *
16412114 AACCCTCACTC-CAGTCTGATCTTAGACTGGGAATGAACTCAGTATGGCTAAGCCAACCGATGAA
1 AACCCTCAGTCTGA-TCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAA
* * * * *
16412178 ATGAGCTGGC-AGGCGGGCGGGCACTACGCCGACTAGAGAGACGGGATGCGTAAGCCGTGGATCG
65 ACGAGCAGGCGA-GCGGGCGGGCACTACGCCGGCCAGAGAGAC-GGATGCGCAAGCCGTGGATCG
*
16412242 ATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
128 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* * * *
16412307 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCTTGGCAAGATGACTTGTTTTC
193 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * *
16412372 TATTTTTCACAATTTTCAAAACTTTTTTCGGTTCGAAATTTTTTAAAATTTTTACAGAAGGAGTT
258 TATTTTTCACAATTTTC-AAACATTTTTCGGTTCGAGATTTTTTAAAATTTTT-TAGAAGGAGTT
* *
16412437 TTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
321 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
**
16412502 AATTCTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
386 AAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
16412567 TGGCTACTGACAGCAAACCTGTAAAATGTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTT
451 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * *
16412632 TGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCGCACATCATGTGGGTAC
516 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* *
16412697 A-CCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCT
581 ACCCCCCCGACCCCCCCGATC-T-GGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGATGCTCC
* * * * * *
16412761 GGTGATGGTGTCCCGACGAAA-AAAAATACGACACCAACACTTGCCCGAGCCTAGCATGTGCTGC
644 GGCGATGGTGCCCCGAC-AAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGC
* * *
16412825 CGTAACCCTCAGTCCGGTCC-ATTCGTAGACTGGGAATGAACT
708 CGCAACCCTCGGTCCGGTCCGA-TCTTAGACTGGGAATGAACT
16412867 CCGTATGACT
Statistics
Matches: 2212, Mismatches: 220, Indels: 164
0.85 0.08 0.06
Matches are distributed among these distances:
863 2 0.00
864 357 0.16
865 248 0.11
866 61 0.03
869 65 0.03
870 3 0.00
873 90 0.04
874 5 0.00
875 2 0.00
876 1 0.00
877 6 0.00
878 1 0.00
879 2 0.00
880 11 0.00
881 217 0.10
882 237 0.11
883 3 0.00
884 6 0.00
885 17 0.01
886 8 0.00
888 1 0.00
889 5 0.00
890 92 0.04
891 5 0.00
893 1 0.00
894 3 0.00
895 4 0.00
897 11 0.00
900 3 0.00
901 63 0.03
902 241 0.11
903 168 0.08
904 1 0.00
905 1 0.00
907 12 0.01
910 3 0.00
911 254 0.11
912 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
AACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAA
CGAGCAGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGATGCGCAAGCCGTGGATCGATA
GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCACAATTTTCAAACATTTTTCGGTTCGAGATTTTTTAAAATTTTTTAGAAGGAGTTTTGGC
CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
TTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
CCCGACCCCCCCGATCTGGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGATGCTCCGGCGATG
GTGCCCCGACAAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCTATGCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGCTAGAGGGGCGAGATGCGCAAGC
CGGGGATCGACCGGATCCCCCTCTGCGTGCTGACGATCCTACTATCGC
Found at i:16413207 original size:26 final size:26
Alignment explanation
Indices: 16413178--16413228 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16413168 GGTCTGATCG
*
16413178 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
16413204 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
16413229 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:16414887 original size:873 final size:883
Alignment explanation
Indices: 16412966--16417578 Score: 6256
Period size: 873 Copynumber: 5.2 Consensus size: 883
16412956 GGTGGTAGGT
* ** * * * * * **
16412966 GGGATAGGGGGCGAATATAAGGGCCGGGTACCAACACCCACCACTCATCATGTACGCACACCCGG
1 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * ** * * * * * ***
16413031 TCGA-CCCCCGGATCCCCGGAACCCTAATGCTGCCGGTCAGGTTCTCCGGTAATGCTCCGATAAT
66 CCGACCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGGTGATGCTCCGGCGAT
* * * * * *
16413095 GGTGCCCCAACGATGAAAAATGCGGCACCAACTCATGCCCGAGCCCAGCATGTGCTGTCGAAACC
131 GGTG-CCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
16413160 CTCGGTCCGGTCTGATCGTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGT
195 CTC-GT-CGG-C-GATC----AC-GGG-AT--ACTC-G-ATGCTTAGACTGGGAATGAACTCCGT
* * *
16413225 ATGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTCAACCGGCCAGAGGGGCAGGATGCGCA
246 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCA
*
16413290 AGCCGGGGATCGGTCGGGTCCCTCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTTGGTCTAG
311 AGCCGGGGATCGGTCGGGTCCC-CTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTTGGTCTGG
* * *
16413355 TCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAACCAACCGACGAAAGGAATGGGCGGGCG
375 TCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAAGTAA-GGGCGGGCG
16413420 GG-GAGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
439 GGCG-GGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
16413484 AGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
503 AGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
16413549 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
568 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
16413614 TTGAAA-TTTTATGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
633 TTGAAACTTTT-TGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
*
16413678 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCCAAAAACTCAAAGTGT
697 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGT
* * *
16413743 ACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTACTAGCTATTGGCAGC
762 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTACTGGCTATTGGCAGC
* * *
16413808 AAACCTGTAAAATCTCAATTGCTCGTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA
827 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
16413865 GGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
1 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* *
16413930 CCGACCCCCCTGATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTTCGGTGATGCTCCGGCGAT
66 CCGACCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGGTGATGCTCCGGCGAT
* *
16413995 GGTGCCCGATGAAGAAAAATGCGGCACCAACAAATGCCCGAGCCTAGCATGTGCTGCCGCAA-CC
131 GGTGCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
16414059 -C-TC-G-G-TC-C-GG-T-CT-GAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
196 TCGTCGGCGATCACGGGATACTCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * * *
16414113 AACGAAACGAGCGTGTGGGTGCTCAATCGGCCAGAGCGGTGGGATGTGCAAGCCGTGGATTGGTC
261 CACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC
* * * * **
16414178 GGGTCTCCCTCTACGTGCTGCCGATCTTGCTACCGCAACCCTTGGTCTGGTCCAATCTTAGACTG
326 GGGTC-CCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTTGGTCTGGTCTGATCTTAGACTG
*
16414243 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGTAACGGGCGGGCGGGCGGGCACTACGCC
390 GGAATGAACTTCGTATGCCTAAGCCAACCGACGAAAGTAA-GGGCGGGCGGGCGGGCACTACGCC
*
16414308 GGCTAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTT
454 GGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTT
16414373 CATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
519 CATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
16414438 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA-TTTTATGCG
584 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT-TGCG
*
16414502 GTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
648 GTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* *
16414567 GTATTTTTGTTGGCATGCACAAAAACATTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGATC
713 GTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACC
*
16414632 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTACTAGCTATTGGCAGCAAACCTGTAAAATCTC
778 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTACTGGCTATTGGCAGCAAACCTGTAAAATCTC
* * *
16414697 AATTGCTCATTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA
843 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
16414738 GGGATAGGGGACCAATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
1 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* *
16414803 CCGACCCCCCTGATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTTCGGTGATGCTCCGGCGAT
66 CCGACCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGGTGATGCTCCGGCGAT
* *
16414868 GGTGCCCGATGAAGAAAAATGCGGCACCAACAAATGCCCGAGCCTAGCATGTGCTGCCGCAACCC
131 GGTGCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
16414933 TCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
196 TC-GT-CGG-C-GATC----AC-GGG-AT--ACT-CG-ATGCTTAGACTGGGAATGAACTCCGTA
* * *
16414998 TGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTCAACCGGCCAGAGGGGCAGGATGCGCAA
247 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAA
*
16415063 GCCGGGGATCGGTCGGGTCCCTCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTTGGTCTAGT
312 GCCGGGGATCGGTCGGGTCCC-CTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTTGGTCTGGT
* * *
16415128 CTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAACCAACCGACGAAAGGAATGGGCGGGCGG
376 CTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAAGTAA-GGGCGGGCGG
16415193 G-GAGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGA
440 GCG-GGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGA
16415257 GTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
504 GTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
16415322 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCAAGATTTT
569 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * *
16415387 TGAAACTTTTTACGGTTCT-AGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCAAAACTTG
634 TGAAACTTTTTGCGGTT-TGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * * *
16415450 GTAGACGTGATCATTGTATTTTTGTTTGCATGCA-AAACAAAATTCAGCTAAAAACTCGAAGTGT
698 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA-AACATTCAGCTAAAAACTCAAAGTGT
* * *
16415514 ACAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGGCACTTTAATGGCTATTGGCAGC
762 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTACTGGCTATTGGCAGC
* *
16415579 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTATCAAGGTTTGATGA
827 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * *
16415636 GGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCACTCACGA-CGTGTGCGCACACC
1 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT--CGCAC-ATCATGTGCGCACACC
* * *
16415700 CACCCCGGCCCCCTTGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC-TCTGGTGATGCTCCG
63 C-CCCCGACCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTC-GGTGATGCTCCG
* ** *
16415764 GTGATGGTGCCCCGACAAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAACATGTGCTGCCG
126 GCGATGGTG-CCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCG
* * *
16415829 TAACCCT--T--G-G-TC-C--AAT-C-CGAT-CTTAGGCTGGGAATGAACTCCGTATGCCTAAG
190 CAACCCTCGTCGGCGATCACGGGATACTCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * ** *
16415882 TCAACCCACGAAACGAGCGCGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCATAAGTCGGGGA
255 TCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
** * * ** * * * *
16415947 TCGACCAGGTCCCCTCTGTGTGCTGCCGATCCTGTTGCTGCAA-CCTTCAGTCTGATTTGATCTT
320 TCGGTCGGGTCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTT-GGTCTGGTCTGATCTT
* *
16416011 AGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAA-T--GAGCGGGCGGGCAGGCACT
384 AGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAAGTAAGGGCGGGCGGGCGGGCACT
* * * *
16416073 ACGCCGGTTAGAGAGACGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
449 ACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCAC
* *
16416138 AACTTCATATTTCTGTGTGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
514 ATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
16416203 GCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
579 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
*
16416268 TGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
644 TGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * * * * *
16416333 CCTTGTATTTTTCTTGGAAGGCATGAAAAA-ATTTAGCTAAAAACT-AGAAGTGTACAATATTTT
709 CCTTGTATTTTTGTTGGCATGCA-CAAAAACATTCAGCTAAAAACTCA-AAGTGTACAAGATTTT
* * * *
16416396 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAAC-GGCTACTAGCAACAAACCTGTA
772 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT-ACTGGCTATTGGCAGCAAACCTGTA
16416460 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
836 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * * *
16416508 -GGATTAGGGGGCGAATATAAGGGCCAAGTATCATCACCCATCGCACATCATGTGGGCACACCCC
1 GGGA-TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * *
16416572 CCCGACCCCCC-GATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGA
65 CCCGACCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGGTGATGCTCCGGCGA
* *
16416636 TGGTGCCCCAGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
130 TGGTGCCCGA-TGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* *
16416701 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTTGGAATGAACTCCG
194 CCTC-GTC-GG--CGATC----AC-GGG-AT--ACT-C-GATGCTTAGACTGGGAATGAACTCCG
* * * ** * **
16416766 TATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGTCGGCCAGAGGGGTGGGATGCAT
245 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGC
** * * * * *
16416831 AAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGTCAATCCTACTACCGCAACCCTCGGT-TC
310 AAGCCGGGGATCGGTCGGGT-CCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTTGGTCT-
* *
16416895 GAT-TCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAA-T------GAG
373 GGTCT-GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAAGTAAGGGCGGG
* * * *
16416952 CGGGC-AGCACTACGCTGGCCAGAGAGACGGGATGCGAAAGCCGTGGATCGATAGGGTGGTAGGT
437 CGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *** *
16417016 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATCCATACA
502 GAGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * * *
16417081 ATGGCCCCTTAAGCCTTCACATGAAGTTTCAAGGCAACATGACTCGTTTTCTATTTTTCATGATT
567 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * *
16417146 TTTGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAATCTT
632 TTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * *
16417211 GCTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCCAAGTGT
697 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGT
* * * * * * *
16417276 ACAATATTTTGTGGCCATTTGAAAAAAGTGTCCCTATTTCAAACACTTTAATGGCTACTGGCATC
762 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTACTGGCTATTGGCAGC
16417341 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
827 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
**
16417398 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCACATGCGCACACCTCC
1 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CC
* * * * *
16417463 CACC-CCCAGCCCCCGATTGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGG
65 C-CCGACC--CCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGGTGATGCTCCGG
* ** *
16417527 TGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
127 CGATGGTG-CCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAG
16417579 TAGCCAGTAA
Statistics
Matches: 3349, Mismatches: 273, Indels: 189
0.88 0.07 0.05
Matches are distributed among these distances:
867 4 0.00
868 102 0.03
869 12 0.00
870 17 0.01
871 230 0.07
872 216 0.06
873 825 0.25
874 15 0.00
875 80 0.02
876 98 0.03
877 6 0.00
878 5 0.00
879 1 0.00
880 2 0.00
882 3 0.00
883 5 0.00
884 1 0.00
887 3 0.00
888 1 0.00
889 8 0.00
890 449 0.13
891 15 0.00
892 6 0.00
893 8 0.00
894 189 0.06
895 87 0.03
896 4 0.00
897 5 0.00
898 236 0.07
899 519 0.15
900 78 0.02
901 63 0.02
902 56 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (883 bp):
GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
CCGACCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGGTGATGCTCCGGCGAT
GGTGCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
TCGTCGGCGATCACGGGATACTCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC
GGGTCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTTGGTCTGGTCTGATCTTAGACTGG
GAATGAACTTCGTATGCCTAAGCCAACCGACGAAAGTAAGGGCGGGCGGGCGGGCACTACGCCGG
CTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCA
TATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT
TGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
TTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATT
TGAAAAAAGTGTCCCCATTTCAGACACTTTACTGGCTATTGGCAGCAAACCTGTAAAATCTCAAA
TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
Found at i:16414977 original size:26 final size:26
Alignment explanation
Indices: 16414948--16415000 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16414938 CCGGTCTGAT
16414948 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16414974 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16415000 C
1 C
16415001 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16415347 original size:899 final size:892
Alignment explanation
Indices: 16414075--16417578 Score: 4918
Period size: 890 Copynumber: 3.9 Consensus size: 892
16414065 CCGGTCTGAT
* * *
16414075 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGTGGGTGCTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * ** * * ** * *
16414140 CGGCCAGAGCGGTGGGATGTGCAAGCCGTGGATTGGTCGGGTCTCCCTCTACGTGCTGCCGATCT
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTC-CCCTCTGCGTGCTGCCGATCC
* * ** *
16414205 TGCTACCGCAACCCTTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
130 TACTACCGCAACCCTTGGTCTAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
* *
16414270 CCGACGAAAGTAACGGGCGGGCGGGCG-GGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGTC
195 CCGACGAAA-T---GAGCGGGCGGG-GAGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCC
16414334 GTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTT
255 GTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTT
16414399 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
320 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
16414464 TCGTTTTCTATTTTTCATGATTTTTGAAA-TTTTATGCGGTTTGGGATTTTTTAAAATTTTTTTG
385 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTT-TGCGGTTTGAGATTTTTTAAAATTTTTTCG
16414528 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAC
449 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAC
* *
16414593 ATTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAG
514 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * * *
16414658 ACACTTTACTAGCTATTGGCAGCAAACCTGTAAAATCTCAATTGCTCATTAAGGGGGTGTGAGTT
579 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
16414723 CTTGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGTCAAGTACCAGCACCCATCGCACATCA
644 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
16414788 TGTGCGCACACCCCCCCGACCCCCCTGATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTTCGG
709 TGTGCGCACACCCCCCCGACCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
* * *
16414853 TGATGCTCCGGCGATGGTG-CCCGATGAAGAAAAATGCGGCACCAACAAATGCCCGAGCCTAGCA
774 TGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCA
16414917 TGTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
839 TGTGCTGCCGCAACCCTC-GT-CGGTC-GATCTTAGACTGGGAATGAACTCCGTATG
* *
16414974 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * **
16415039 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCTCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCC-CTCTGCGTGCTGCCGATCC
* * *
16415104 TACTGCCGCAACCCTTGGTCTAGTCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAACCAA
130 TACTACCGCAACCCTTGGTCTAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
*
16415169 CCGACGAAAGGAATGGGCGGGCGGGGAGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCG
195 CCGACG--A--AATGAGCGGGCGGGGAGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCG
16415234 TGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
256 TGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
16415299 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
321 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
16415364 TGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACGGTTCT-AGATTTTTTAAAATTTTTT-GG
386 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT-TGAGATTTTTTAAAATTTTTTCGG
* * * *
16415427 AAGGAGTTTTGGCCCAAAACTTGGTAGACGTGATCATTGTATTTTTGTTTGCATGCA-AAACAAA
450 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA-AAC
* *
16415491 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAG
514 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
16415556 GCACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
579 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
16415621 ATCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCACTCACGA
644 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT--CGCAC-A
* * * *
16415686 -CGTGTGCGCACACCCACCCCGGCCCCCTTGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
706 TCATGTGCGCACACCC-CCCCGACCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * *
16415750 CTGGTGATGCTCCGGTGATGGTGCCCCGACAAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
770 CCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
* *
16415815 AACATGTGCTGCCGTAACCCT--T--G--G-TC-----C--------AA-TCCG-AT-
835 AGCATGTGCTGCCGCAACCCTCGTCGGTCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
16415850 CTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGCGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * * *
16415915 CGGCCAGAGGGGCGGGATGCATAAGTCGGGGATCGACCAGGTCCCCTCTGTGTGCTGCCGATCCT
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCTCTGCGTGCTGCCGATCCT
** * * * *
16415980 GTTGCTGCAA-CCTTCAGTCT-GATTTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
131 ACTACCGCAACCCTT-GGTCTAG-TCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
* * * *
16416043 ACCGACGAAATGAGCGGGCGGGCAGGCACTACGCCGGTTAGAGAGACGGGATGCACAAGCCATGG
194 ACCGACGAAATGAGCGGGCGGGGAGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGG
* * *
16416108 ATCGATAGGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTCTGTGTGCCAAAGCCATTTTTAT
259 ATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
*
16416173 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
16416238 TTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
389 TTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGG
* * * * *
16416303 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGAAGGCATGAAAAA-ATTT
454 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAACATTC
* *
16416367 AGCTAAAAACT-AGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATA
518 AGCTAAAAACTCA-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
16416431 CTTTAACGGCTACTAGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
582 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
16416496 GAGGTTTGATGA-GGATTAGGGGGCGAATATAAGGGCCAAGTATCATCACCCATCGCACATCATG
647 GAGGTTTGATGAGGGA-TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * *
16416560 TGGGCACACCCCCCCGACCCCCC-GATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCG
711 TGCGCACACCCCCCCGACCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTG
* * *
16416624 ATGCTCCGACGATGGTGCCCC-AGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
776 ATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCAT
*
16416688 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATG
840 GTGCTGCCGCAACCCTC-GTC-GGT-CGATCTTAGACTGGGAATGAACTCCGTATG
* * * * **
16416744 CTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * * * *
16416809 CGGCCAGAGGGGTGGGATGCATAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGTCAATCC
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGT-CCCCTCTGCGTGCTGCCGATCC
* * *
16416874 TACTACCGCAACCCTCGGTTCGATTC-GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
130 TACTACCGCAACCCTTGG-TCTAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
* * *
16416938 ACCGACGAAATGAGCGGGC----A-GCACTACGCTGGCCAGAGAGACGGGATGCGAAAGCCGTGG
194 ACCGACGAAATGAGCGGGCGGGGAGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGG
* ***
16416998 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
259 ATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
* * * * * *
16417063 GGCTTGTAAATCCATACAATGGCCCCTTAAGCCTTCACATGAAGTTTCAAGGCAACATGACTCGT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
*
16417128 TTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCAGAAGG
389 TTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGG
* * *
16417193 AGTTTTGGCCCCAATCTTGCTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCA
454 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCA
* * * * *
16417258 GCTAAAAACTCCAAGTGTACAATATTTTGTGGCCATTTGAAAAAAGTGTCCCTATTTCAAACACT
519 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
16417323 TTAATGGCTACTGGCATCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
584 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
**
16417388 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCACATGC
649 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
16417453 GCACACCTCCCACC-CCCAGCCCCCGATTGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAT
714 GCACACC-CCC-CCGACC--CCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGT
* * *
16417517 GATGCTCCGGTGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
775 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAG
16417579 TAGCCAGTAA
Statistics
Matches: 2334, Mismatches: 208, Indels: 131
0.87 0.08 0.05
Matches are distributed among these distances:
867 1 0.00
868 108 0.05
869 11 0.00
870 17 0.01
871 234 0.10
872 218 0.09
873 3 0.00
874 9 0.00
875 75 0.03
876 98 0.04
877 3 0.00
878 6 0.00
879 2 0.00
883 1 0.00
887 1 0.00
889 5 0.00
890 447 0.19
891 11 0.00
892 7 0.00
893 7 0.00
894 190 0.08
895 85 0.04
896 7 0.00
897 3 0.00
898 232 0.10
899 406 0.17
900 23 0.01
901 65 0.03
902 57 0.02
903 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCTCTGCGTGCTGCCGATCCT
ACTACCGCAACCCTTGGTCTAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAAC
CGACGAAATGAGCGGGCGGGGAGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGC
TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCCGACCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCT
CCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTG
CCGCAACCCTCGTCGGTCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:16416756 original size:26 final size:26
Alignment explanation
Indices: 16416718--16416770 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16416708 CTGGTCCGAT
16416718 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16416744 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16416770 C
1 C
16416771 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16418190 original size:26 final size:26
Alignment explanation
Indices: 16418154--16418206 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16418144 GTTGACTTAG
16418154 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16418180 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16418206 G
1 G
16418207 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16418942 original size:25 final size:26
Alignment explanation
Indices: 16418893--16418944 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16418883 GTTGACTTAG
*
16418893 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16418919 GCATACGGAGTTC-TTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16418944 G
1 G
16418945 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 12 0.48
26 13 0.52
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16419819 original size:26 final size:26
Alignment explanation
Indices: 16419783--16419835 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16419773 GTTGACTTAG
* *
16419783 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
16419809 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
16419835 G
1 G
16419836 ATAGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:16420719 original size:26 final size:26
Alignment explanation
Indices: 16420683--16420735 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16420673 GTTGACTTAG
16420683 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
16420709 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16420735 G
1 G
16420736 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16421102 original size:899 final size:896
Alignment explanation
Indices: 16418870--16421453 Score: 3750
Period size: 899 Copynumber: 2.9 Consensus size: 896
16418860 ACTCGCCCCG
*
16418870 CCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC-TT
1 CCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* *
16418934 CCCAATCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGCATGTGCTGGT
66 CCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGCATGTGCTGGT
* * * *
16418999 GCCGCATTTTTCTTTGTCCGGGGCACCAT--C--A-C--CG-GAGAACCTGACCAGTGGCGTTGG
131 GCCGCATTTTTCTTCG-CCGGGGCACCATCCCGGAGCATCGTGAGAACCTGACCGGCGGCATTGG
* * *
16419056 GGCTCCGACGATCAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA-TGTG
195 GGTTTCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT-TG
16419119 GCCCTTATATTGGCCCCCTATCCCTC-TCCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
259 GCCCTTATATTGG-CCCCTATCCCTCAT-CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
16419183 TGAGACTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAA
322 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
16419248 TGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
387 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * *
16419313 CAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAA
452 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTGAAAAAATCTCGAA
* * *
16419378 CCGCAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACGTCACGTG
517 CCGCAAAAAGTTT-AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGT-
*
16419443 AAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATG
580 -AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATG
16419508 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
644 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * *
16419573 AGCGTAGTGCCCGCCCGCCTGCCCGCCCACTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
709 AGCGTAGTGCCCGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * *
16419638 TTCCCAATCTAAGATTGGACCAGACCAAGGGTTACGGCAACAGGATCGGCAGCACGTAGAAGGGG
774 TTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGACAACAGGATCGGCAGCACGTAGAAGGGG
* *
16419703 ACCCGGCGGATCCCTGGCTTGCGCATCCCACCCCTCAAGCTGGCTGAGCGCCCTTACA
839 ACCCGGCGGATCCCTAGCCTGCGCATCCCACCCCTCAAGCTGGCTGAGCGCCCTTACA
* * * *
16419761 CC-CATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATACGGAGTTAATT
1 CCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * *
16419825 CCCAGTCTAAGATAGGACTGGATTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
66 CCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGG
* * * *
16419890 TGCTGTATTTTTCTTCGTC-GGGCACCATCGCCGGAGCATCGTCGAAGAACCTGACCGACGGCAT
130 TGCCGCATTTTTCTTCGCCGGGGCACCATC-CCGGAGCATCGT-G-AGAACCTGACCGGCGGCAT
* ** *
16419954 TGGGGTTTCGATGATCGGGGGGGCCGGGCGGGGTGTGCATACATGATGTGGGATGGGTGCTGGTA
192 TGGGGTTTCGACGATC-GGGGGGCCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
16420019 CTTGGCCCTTATATTGGCCAGCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGC
255 CTTGGCCCTTATATTGGCC-CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
16420084 ATTTCAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
319 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
16420149 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
384 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
*
16420214 ATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTCCGAAAAAATTTGAAAAAATCTC
449 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTGAAAAAATCTC
* * *
16420279 GAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGATTCGTCTTGCCATGAAACTTCGC
514 GAACCGCAAAAAGTTT-AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGC
* * * * *
16420344 GTAGGCTTACGGGACCATTATATGAATTTACAAGCCACAAAAATGGCATTGGCACGTAGAAATAT
578 GTAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATAT
**
16420409 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTATCTCTCTGGC
643 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * *
16420474 CAGCGTAGTGCCTGCCTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTC
708 CAGCGTAGTGCCCGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
** * ** * * * ** * *
16420539 ATTCGTAGTCTAAGATCGGACTAGACTGATGGTTGCGATAGTAGGATCGGCCGCACGTAGAGGGG
773 ATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGACAACAGGATCGGCAGCACGTAGAAGGG
* * *** ** *
16420604 GACCCGGTC-GATCCC-AGCCTGTGCATGCTGTCCCTCTGGC-GGCTGAGCG-CC-TGCA
838 GACCCGG-CGGATCCCTAGCCTGCGCATCCCACCCCTCAAGCTGGCTGAGCGCCCTTACA
* *
16420659 CGCTCGTTTGGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
1 C-CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * **
16420724 TCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGCAGTACATGCTGGAATCGAGCATGTGCTG
65 TCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCG-GCATGTGCTG
16420789 GTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCTAGAGAACCTGACCGGCGGCA
129 GTGCCGCATTTTTCTTCGCCGGGGCACCATC-CCGGAGCATCG-T-GAGAACCTGACCGGCGGCA
16420854 TTGGGGTTTCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
191 TTGGGGTTTCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
16420919 TTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
256 TTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
16420984 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
320 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * *
16421049 AATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTGTTTTGTGCATGCTAACAAAAA
385 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* *
16421114 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTGAAAAAATCTTG
450 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTGAAAAAATCTCG
* * *
16421179 AACCACAAAAAGATTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
515 AACCGCAAAAAG-TTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT--CG
* * *
16421244 AGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
577 CGTAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATA
*
16421309 TGAAGATGTGCCT-AACCCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTG
642 TGAAGATGTGCCTAAACCC-ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * * * * * * *
16421373 GCTAGAGTAGTGCCCACCCGCCCACCCGCCCCCTCGTTTCGTTGGTTGACTTAGACATATGAAGT
706 GCCAGCGTAGTGCCCGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
16421438 TCATTCCCAGTCTAAG
771 TCATTCCCAGTCTAAG
16421454 CATACGGAGT
Statistics
Matches: 1512, Mismatches: 151, Indels: 50
0.88 0.09 0.03
Matches are distributed among these distances:
890 63 0.04
891 52 0.03
892 26 0.02
893 1 0.00
895 1 0.00
896 1 0.00
898 7 0.00
899 336 0.22
900 156 0.10
901 279 0.18
902 251 0.17
903 5 0.00
904 332 0.22
905 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
CCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGCATGTGCTGGT
GCCGCATTTTTCTTCGCCGGGGCACCATCCCGGAGCATCGTGAGAACCTGACCGGCGGCATTGGG
GTTTCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTGAAAAAATCTCGAACCGC
AAAAAGTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTAGGCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAG
TGCCCGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCGGACCAGACCAAGGGTTACGACAACAGGATCGGCAGCACGTAGAAGGGGACCCGGC
GGATCCCTAGCCTGCGCATCCCACCCCTCAAGCTGGCTGAGCGCCCTTACA
Found at i:16422345 original size:26 final size:26
Alignment explanation
Indices: 16422316--16422368 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16422306 GTTGACTTAT
* *
16422316 GCATATGGAGTTTA-TTCCTAGTCTAA
1 GCATACGGAGTTAATTTCC-AGTCTAA
16422342 GCATACGGAGTTAATTTCCAGTCTAA
1 GCATACGGAGTTAATTTCCAGTCTAA
16422368 G
1 G
16422369 ATAGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTAATTTCCAGTCTAA
Found at i:16423254 original size:26 final size:26
Alignment explanation
Indices: 16423218--16423270 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16423208 TTTGACTTAG
16423218 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16423244 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16423270 G
1 G
16423271 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16424180 original size:380 final size:380
Alignment explanation
Indices: 16423474--16424236 Score: 1176
Period size: 380 Copynumber: 2.0 Consensus size: 380
16423464 TATATTGGCC
16423474 CCCTATCAAACCTCAAGAACTCACACCCCCGTAAAGAGCATTTGAGATTTTACAGGTTTGCTACC
1 CCCTATCAAACCTCAAGAACTCACACCCCCGTAAAGAGCATTTGAGATTTTACAGGTTTGCTACC
* * *
16423539 AGTAGCCATTAAAGTGTATTAAATGGGGACATTTTTTTCAAATGGTCACAAAATCCTGTACAATT
66 AGTAGCCATTAAAGTGTATCAAATGGGGACACTTTTTTCAAATAGTCACAAAATCCTGTACAATT
* *
16423604 CAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATACGTCTACCAAGTTTG
131 CAAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATACGTCTACCAAATTTG
** *
16423669 GGGCCAAAACTCCTTCCAAAAAAATGTTAAAAAATCCCGAACCGCAAAAACTTTTGAAAATCGTG
196 GGGCCAAAACTCCTTCCAAAAAAATGTTAAAAAATCCCGAACCGCAAAAACTTTCCAAAATCATG
* *
16423734 AAAAATAGAAAACGCGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGA
261 AAAAATAGAAAACGAGTCATCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGA
* *
16423799 ATTTACAAGCCATAAAAATGGCATTGGTAGGCAGAAATATGAAGATGTGCCTAAA
326 ATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAA
* * * * *
16423854 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCGTTTGAGATTTTATAGTTTTGCTAC
1 CCCT-ATCAAACCTCAAGAACTCACACCCCCGTAAAGAGCATTTGAGATTTTACAGGTTTGCTAC
* * *
16423919 CAGTAG-CAGTTAAAGTGTCTCAAAT-GGGACACTTTTTTCAAATAGTCACAAAATCTTGTACAC
65 CAGTAGCCA-TTAAAGTGTATCAAATGGGGACACTTTTTTCAAATAGTCACAAAATCCTGTACAA
** *
16423982 TTTGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATAGAAGGATCACGTCTACCAAAT
129 TTCAAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGAT-ACGTCTACCAAAT
* *
16424047 TTGGGGCCAAAA-TCCTTCCAAAAAAAT-TTAAAAAAATCCTC-AACCGTAAAAAGTTTCCAAAA
193 TTGGGGCCAAAACTCCTTCCAAAAAAATGTT-AAAAAATCC-CGAACCGCAAAAACTTTCCAAAA
* *
16424109 TTATGAAAAATAGAAAATGAGTCATCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTG
256 TCATGAAAAATAGAAAACGAGTCATCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTG
** *
16424174 TATGAATTTACAAGTGATAAAAATGGCATTGGCAAGTAGAAATATGAAGATGTGCCTAAA
321 TATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAA
16424234 CCC
1 CCC
16424237 ACCTACCACC
Statistics
Matches: 348, Mismatches: 30, Indels: 10
0.90 0.08 0.03
Matches are distributed among these distances:
379 2 0.01
380 246 0.71
381 100 0.29
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (380 bp):
CCCTATCAAACCTCAAGAACTCACACCCCCGTAAAGAGCATTTGAGATTTTACAGGTTTGCTACC
AGTAGCCATTAAAGTGTATCAAATGGGGACACTTTTTTCAAATAGTCACAAAATCCTGTACAATT
CAAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATACGTCTACCAAATTTG
GGGCCAAAACTCCTTCCAAAAAAATGTTAAAAAATCCCGAACCGCAAAAACTTTCCAAAATCATG
AAAAATAGAAAACGAGTCATCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAA
Found at i:16424522 original size:25 final size:26
Alignment explanation
Indices: 16424487--16424538 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
16424477 GTTGACTTAG
16424487 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16424513 GCATA-GGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16424538 G
1 G
16424539 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16425410 original size:25 final size:27
Alignment explanation
Indices: 16425382--16425437 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
16425372 GTTGACTTAG
*
16425382 GCATA-CGGAGATCATTCCCAGTCT-A
1 GCATACCGAAGATCATTCCCAGTCTAA
*
16425407 GCATACCGAAGTTCATTCCCAGTCTAA
1 GCATACCGAAGATCATTCCCAGTCTAA
16425434 GCAT
1 GCAT
16425438 CGGTACTGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 5 0.19
26 17 0.63
27 5 0.19
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.25
Consensus pattern (27 bp):
GCATACCGAAGATCATTCCCAGTCTAA
Found at i:16426708 original size:883 final size:875
Alignment explanation
Indices: 16423854--16427194 Score: 4085
Period size: 883 Copynumber: 3.8 Consensus size: 875
16423844 TGTGCCTAAA
* * *
16423854 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCGTTTGAGATTTTATAGTTTTGCTAC
1 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAC
* *
16423919 CAGTAG-CAGTTAAAGTGTCTCAAAT-GGGACACTTTTTTCAAATAGTCACAAAATCTTGTACAC
66 CAGTAGCCA-TTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
16423982 TTTGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATAGAAGGATCACGTCTACCAAAT
130 TTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* *
16424047 TTGGGGCC-AAAATCCTTCCAAAAAAATTTAAAAAAATCCTC-AACCGTAAAAAGTTTCCAAAAT
195 TTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCC-CGAACCGTAAAAAGTTTCAAAAAT
* * * * *
16424110 TATGAAAAATAGAAAATGAGTCATCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGT
259 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
** *
16424175 ATGAATTTACAAGTGATAAAAATGGCATTGGCA-AGTAGAAATATGAAGATGTGCCTAAACCCAC
324 ATGAATTTACAAGCCATAAAAATGGCATTGGCACA-CAGAAATATGAAGATGTGCCTAAACCCAC
* *
16424239 CTACCACCCTATCGATCCACAACTTGCGCATCCCGTCTCTCTGGCCGGCGTA---G---TGCCCG
388 CTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGCCGCCCCGCCCG
16424298 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
453 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * *
16424363 AAACCGAGGGTTGCGACAGCAGGATTGGCAGCACACAAAGAGGGAAC-CGACCGATCCCTGGCTT
518 AAACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAG-GGGGACTCGACCGATCCCCGGCTT
* * *
16424427 GCCCATCCCGCCCCTCTGGCCGGCTGAGTA-ACCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
582 GCGCATCCCGCCCCTCTGGCCGGCTGAGCACA-CGCACACTCGTTTCGTGGGTTGACTTAGGCAT
*
16424491 ACGGAGTTCATTCCCAGTCTAAGCATAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
646 ACGGAGTTCATTCCCAG--T---C-TA--AG--CA-T--C-G-----GA-CTG----GACCGAGG
*
16424556 GTTGCG-CAGCACATGCTGGGCTCGGGCATTTGTTGGTGCCG-CATTTTTCTTCGCCGGGGCA--
687 GTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGACA-TTTTCTTCGCCGGGGCACC
* * * *
16424617 ---CC-ATCA-T--CGGAGAACATGACCGACGGCATTGGGGTTCCGGCGATCTGGGGGGCCGGCG
751 TCGCCGAGCATTACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCAGGGGGGCCAG-G
*
16424675 GGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
815 GGG-GTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
16424737 CACTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
1 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAC
*
16424802 CAGTAGCCACTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
66 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
16424867 TCGAGTTTTTAGCTGAAGTTTTTTGTGCATGCC-AAAAAAATACAAGGATCACATCTACCAAGTT
131 TTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
* * * * *
16424931 TGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAATTTTCAAAAATCG
196 TGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
16424996 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCTATTGTA
261 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC-ATTGTA
* **
16425061 TGAATTTACAAGCCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCC-AAACCCACCT
325 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
16425125 ACCACCCTATCGATCCACGACTTGCGCTTCCCGTCTCTCCGTACCGGCATAGTTGCC-CGCCCGC
390 ACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTG-GCCGGC---GTAGCCGC-CCCG-
* *
16425189 CCCACCCGCCCGCTCGTTTCGTCGGTTGGAATTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
449 CCCGCCCGCCCGCTCGTTTCGTCGGTTGG-CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * ** * * *
16425254 -CATCAAACCAAAGGG-TATGGCAGCAGGATCGATAGCATACAGAAGGGGACTCGATCGATCCCC
513 AGACCAAACC-GAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGACTCGACCGATCCCC
* * ** * *
16425317 AGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGTTAGTTTCATGGGTTGACTTAG
577 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACACGCACACTCGTTTCGTGGGTTGAC-T--
16425382 GCATACGGAGATCATTCCCAGTCTAGCATACCGAAGTTCATTCCCAGTCTAAGCATCGGTACTGG
639 ---TA--G-G--CA-T---A--C--G------G-AGTTCATTCCCAGTCTAAGCATCGG-ACTGG
* * * * ** * * **
16425447 ACCGATGGTTG-TAGCGGCACATGTTGGGCTTCGGGCAATGTGCCGGTGTCGATATTTTCTTCAT
680 ACCGAGGGTTGCGA-CAGCACATGCTGGGC-TCGGGC-ATGTGTTGGTGCCGACATTTTCTTCGC
* * * *
16425511 CGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGCCATTGGGGTTCCGACGATCAG
742 CGGGGCACC-TCG-CCGAGCATTACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCAG
* ** *
16425576 GGGGGCCAGGGGGGTGTGTGCAC-TGATGTGTTATGGGTGTTGGTACTTGGCCCTTATATTGGCC
805 GGGGGCCAGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCC
16425640 CCCTAT
870 CCCTAT
*
16425646 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTAC
1 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAC
16425711 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-
66 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * * *
16425775 TTAAATTTTTAGCTGAATTTTTTTATGCATGCCAACAAAGATAGAAGGATCACGTCTACCAAGTT
131 TTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
* *
16425840 TGGGGCCAAAAATCATTCCAAAAAAATTTTAAAAAATCCCGAAAC-TCAAAAAGGTTT-AAAAAT
196 TGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGT-AAAAA-GTTTCAAAAAT
* **
16425903 CATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGGTGGCTTAAGGGACCATTGT
259 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
16425968 ATGAATTTACAAGCCATAAAAATGGTATTGGCACACAGAAATATGAAGATGTGCCAAAACCCACC
324 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACC
* *
16426033 TACCACCCTATCGATCCACGACTTGAGCATCACGTCTCTCTGGCCGGCGTAGAGCCCGCCCACCC
389 TACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGT--AG-CCG--C-CCC
* * *
16426098 GCCCGCCCGCCCGCCTGTTGGTTTCGTCGG-TGCCCTTAGGCATACAGAGTTCATTCCCAGTCTA
448 GCCCGCCCGCCCG-C---TCGTTTCGTCGGTTG-GCTTAGGCATACGGAGTTCATTCCCAGTCTA
** * * * *
16426162 AGATCAGACCGGATCGAGGGTTGTGGCAGCAAGATTGGCAACACACAGAGGGGGAC-CTGACCGA
508 AGATCAGACCAAACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGACTC-GACCGA
* *
16426226 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACACACACACTCCTTT-GTGGGTTGA
572 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACACGCACACTCGTTTCGTGGGTTGA
*
16426290 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCGGACTGGACCGAGGGTTGCGACAACACAT
637 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATCGGACTGGACCGAGGGTTGCGACAGCACAT
*
16426354 GCTGGGCTCGGGCATGTGTTGGTG-CGACATTGTTCTTTGCCGGGGCACCGTCGCCGAAGCATTA
702 GCTGGGCTCGGGCATGTGTTGGTGCCGACATT-TTCTTCGCCGGGGCACC-TCGCCG-AGCATTA
** * * *
16426418 CCGGAGAACCTGACCGGTGGCTTTGGGGTTCCGGCGATC-GGAAGGGCC-GGGGGGTGTGCGTAC
764 CCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCAGG-GGGGCCAGGGGGGTGTGCGCAC
*
16426481 ATGATGTGCAATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTAT
828 ATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
16426529 CCCTCATCAAACTTCGAGAACTCACACCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGC
1 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAC
* * * *
16426594 CAGTAGCCATTCAAGTGTCTAGAATGGGGACATTTTTTTCAAATGGTCACAGAATCTTGTACACT
66 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
16426659 TTGAGTTTTTAGCTGAATTTTTTTGGGCATG-CAAAAAAAATACAAGGATCACGTCTACCAAGTT
131 TTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
* * * **
16426723 TGGGGCCAAAACTCCTTCCAAAAAATTTTTAAAAAATCCCGAGCCGTAAAAAGTTTTGAAAATCA
196 TGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
*
16426788 TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
261 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
16426853 GAATTTACAAGCCATAAAAATGACATTGGCACGCAG-AATAATGAAGATGTGCCTAAACCCACCT
326 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAAT-ATGAAGATGTGCCTAAACCCACCT
* * * * *
16426917 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGTGTCG-TG-CCCGCCCGCC
390 ACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGCCGCCCCGCCCGCC
* *
16426980 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
455 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAA
* * * ** *
16427045 ACCGAGGGTTG-CGCATCAGGATCGGTAGCATGCAGA-GGGGACTCGACCGATCCTCGGCTTGCG
520 ACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGACTCGACCGATCCCCGGCTTGCG
* * * *
16427108 CATCCCGCCCCTCTGGCCGACTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
585 CATCCCGCCCCTCTGGCCGGCTGAGCACACGCACACTCGTTTCGTGGGTTGACTTAGGCATACGG
*
16427173 AGTTCATTCCTAGTCTAAGCAT
650 AGTTCATTCCCAGTCTAAGCAT
16427195 ATGGAGTTCA
Statistics
Matches: 2128, Mismatches: 234, Indels: 204
0.83 0.09 0.08
Matches are distributed among these distances:
869 60 0.03
870 58 0.03
871 62 0.03
872 2 0.00
874 1 0.00
875 16 0.01
879 1 0.00
881 1 0.00
882 30 0.01
883 592 0.28
884 253 0.12
885 86 0.04
886 6 0.00
887 19 0.01
888 3 0.00
894 7 0.00
895 118 0.06
896 40 0.02
898 12 0.01
899 13 0.01
900 6 0.00
901 28 0.01
902 6 0.00
903 2 0.00
904 2 0.00
905 3 0.00
906 2 0.00
907 5 0.00
908 93 0.04
909 353 0.17
910 25 0.01
911 12 0.01
912 46 0.02
913 51 0.02
914 96 0.05
915 2 0.00
916 1 0.00
919 1 0.00
920 1 0.00
921 13 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (875 bp):
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAC
CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
TGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGCCGCCCCGCCCGCCC
GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAA
CCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGACTCGACCGATCCCCGGCTTGCGC
ATCCCGCCCCTCTGGCCGGCTGAGCACACGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGCATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
TGTGTTGGTGCCGACATTTTCTTCGCCGGGGCACCTCGCCGAGCATTACCGGAGAACCTGACCGA
CGGCATTGGGGTTCCGGCGATCAGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCAATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTAT
Found at i:16427194 original size:26 final size:26
Alignment explanation
Indices: 16427165--16427217 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16427155 GTTGACTTAG
* *
16427165 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
16427191 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16427217 G
1 G
16427218 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16427343 original size:185 final size:183
Alignment explanation
Indices: 16427008--16427424 Score: 586
Period size: 185 Copynumber: 2.3 Consensus size: 183
16426998 GTTGGCTTAG
* * * **
16427008 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGCATCAGGATCGGTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGCATCAGGACCGACAG
* *
16427073 CATGCAGAGGGGACTCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCC
66 CATGCAGAGGGGACCCGACCGATCCTCGGCTTGCACATCCCGCCCCTCTGGCCGACTGAGCACCC
* * * * *
16427138 GTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
131 GCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16427191 GCATATGGAGTTCATTCCCAATCTAAGATCAAACCAGACTGAGGGTTGCG-ATAGTAGGACCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGCAT--CAGGACCGAC
* * * *
16427255 AGCATGCAGAAGGGGACCCTATCGATCCTCGGCTTGCACATCCTGCCCCTCTGGCCGGCTGAGCA
64 AGCATGCAG-AGGGGACCCGACCGATCCTCGGCTTGCACATCCCGCCCCTCTGGCCGACTGAGCA
*
16427320 CCCGCACACTCATTTCATGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAA
128 CCCGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
16427376 GCATACGGAGTTCGTTCCCAGTCTAAGATCGAACCAGACCT-AGGGTTGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGA-CTGAGGGTTGC
16427425 AACAGCACAT
Statistics
Matches: 205, Mismatches: 25, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
182 2 0.01
183 45 0.22
184 15 0.07
185 141 0.69
186 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.23
Consensus pattern (183 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGCATCAGGACCGACAG
CATGCAGAGGGGACCCGACCGATCCTCGGCTTGCACATCCCGCCCCTCTGGCCGACTGAGCACCC
GCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16427380 original size:26 final size:26
Alignment explanation
Indices: 16427350--16427402 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16427340 GTTGACTTTG
16427350 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16427376 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16427402 G
1 G
16427403 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16428881 original size:863 final size:861
Alignment explanation
Indices: 16427483--16430058 Score: 3260
Period size: 902 Copynumber: 2.9 Consensus size: 861
16427473 GACGGGGCAC
*
16427483 CATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTTCGGCGATC-GGGGGGTCGGGGGGGTGTGC
1 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGGT--GGGGGGTGTGC
*
16427547 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAACC
64 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
16427612 TCAAGAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
129 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
16427677 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAGTCTTGTA-AACCTCGAGTTTTTGG
194 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAA-TTCGAGTTTTTAG
* * *
16427741 CTGAATTTTTTTATGCATGCCAAAAAAAATACAGGGATCACGTCTACCCAGTTTGGGGCAAAAAC
258 CTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTA-CCAGTTT-GGGCCAAAAC
* * *
16427806 TCCTTTCAAAAAAATTTTAAAAAATCACAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAA
321 TCCTTCCAAAAAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAA
* * * *
16427871 AACGAGTCGTCTTGCCATGAAACTTCACGTTAAGGCTTAAAGGACCATTGTATCAATTTACAAGC
385 AATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * * **
16427936 CATAAAAATGTCATTGGTA-GCAGAAATATGAAGATGTGCCTAAACCCACCTTTCACCCTATCGA
450 CATAAAAATGGCATTGCTACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGA
* * *
16428000 TCCACGGCTTGAGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGC-TT-ATTTCGTCGGTT
515 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGAGCCCGCCCGCGTTCGTTTCGTCGGTT
* * * * *
16428063 GGCTTAGGCATTCGGAGTTCATTCCCAGTCTAAGATCAGCCCAGATCAAGGGTTCCGATAGTAGG
580 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCGACAGCAGG
* * *
16428128 ATCGACAGCATGCAGAAGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCTCCTCTGGTCGGC
645 ATCGACAGCACGCAGAAGGGGACCCGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGG-CGGC
*
16428193 TAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTACCAATCTAAGAT
709 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATT-CCAATCTAAGAT
* *
16428258 TGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGTCATGTGCTGGTGTCGCATTATTC
773 TGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTATTC
* * * *
16428323 TTCGTCGGGGTACCAAT-GTTGGAG
838 TTCGTCGAGGCACC-ATCATCGGAG
* * *
16428347 CATCGTCAGAGAACCTGACCGGCGGCGTTGGGGTTTCGGCGATCGGGGGGGTAGGGGGTGTGCGC
1 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGGTGGGGGGTGTGCGC
* * *
16428412 ACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTT
66 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
16428477 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
131 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
16428542 TGTCTGAAATGCGAACACTTTTTTCAAATGGTCACAAAATCTTTTACAATTCGAGTTTTTAGCTG
196 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTG
*
16428607 AATTTTTTTGTGCATGCCAACAAAAATACAAGGAT-ACGTCTACCAGGTTTGTGGCCAAAACTCC
261 AATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCA-GTTTG-GGCCAAAACTCC
* * *
16428671 TTCCAAAAAAATGTTAAAAAATCCTGAACCGTAAAAACTTTTAAAAATCGTGAAAAATAGAAAAT
324 TTCCAAAAAAATTTTAAAAAATCC-GAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAAT
*
16428736 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCAT
388 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*
16428801 AAAAATGGCATTGCTACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCC
453 AAAAATGGCATTGCTACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCC
* * *
16428866 ACGGCTTGCGCATCCCATTTCTCTGGCCGGTGTAATGCCCGCCCGCCCGCCCGTTCGCTCGTTTC
518 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGT-A-G--AGCCCGCCCG--CG-T---TCGTTTC
* * * * *
16428931 GTCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAGGGTCAGACCATATCAAGGGTTGCAA
573 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCGA
* * * * * * *
16428996 CCGCAGGATCGACAGCACGTAGAGGGGGACTCGACCAATCCCTGACTTGCCCATCCGGCCCCTCT
638 CAGCAGGATCGACAGCACGCAGAAGGGGACCCGACCGATCCCTGACTTGCGCATCCCGCCCCTCT
* * *
16429061 GACCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAAT
703 G-GCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-T-----TA--G-G--CA-T----A-
* * *
16429126 CTAAGCATACGGAGTTCATTCCCAATCTAAGATTAGACCGGACCGAGGGTTACGACAGCACATGC
750 C---G---A---AGTTCATT-CCAATCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGC
* * *
16429191 TGGGCTCGGGCATGTGTTGGTGTCGTATTTTTCTTCGTCGAGGCACCATCATCGGAG
805 TGGGCTCGGGCATGTGCTGGTGTCGCATTATTCTTCGTCGAGGCACCATCATCGGAG
* *
16429248 CATCG-CGGGAGAACCTGACCGGCGGCATTTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGT
1 CATCGTC-GGAGAACCTGACCGGCGGCA-TTGGGGTTTCGGCGATC-GGGGGG--GTGGGGG-GT
*
16429312 GTGCGCAGATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
60 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * * *
16429377 AACCTCGAGAACGCACACCCCCTTAAAGAGCATTTGAGATTTTATAAGTTTGCTGTCAGTAGCCA
125 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
16429442 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTT
190 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTT
* *
16429507 TAGCTGAATATTTTTATGCATGCCAACAAAAATAC-AGGTATCACGTCTACCAAGTTTGGGGC--
255 TAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGG-ATCACGTCTACC-AGTTTGGGCCAA
* * * * *
16429569 --CTCCTTCCGAGAACATTTTAAAAAATCCGAAACTGCAAAAAGTTTTGAAAATCGTGAAAAATA
318 AACTCCTTCCAAAAAAATTTTAAAAAATCCG-AACCGCAAAAAGTTTTAAAAATCGTGAAAAATA
*
16429632 GAAAACTG-GTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
382 GAAAA-TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
16429696 AAGCCATAAAAATGGCATTGGC-ACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCT
446 AAGCCATAAAAATGGCATT-GCTACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCT
* * **
16429760 ATCAATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGAGCCCACCCGCCCGTCTGGCGG
510 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGAG----CCCG-CC--C--GC-G
* * * * * * * *
16429825 TTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCGGTCTAATATCTGATCGGA-CTGA
565 TTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-AA
* * * * *
16429889 GGGTTGTGGCAACAGGATCGACAGCACGCA-AAGGGGGACCCGACCGATCCTTGGCTTGCGCATC
629 GGGTTGCGACAGCAGGATCGACAGCACGCAGAA-GGGGACCCGACCGATCCCTGACTTGCGCATC
* * *
16429953 TCGCCCCTCTGGCAGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
693 CCGCCCCTCTGGC-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTT
* * * * *
16430018 CATTCTGAGTCTAAGATTGAACCGAACTGAGGGTTGCGGCA
757 CATTC-CAATCTAAGATTGGACCGGACCGAGGGTTGCGGCA
16430059 ACAGGATCGG
Statistics
Matches: 1482, Mismatches: 158, Indels: 132
0.84 0.09 0.07
Matches are distributed among these distances:
861 5 0.00
862 153 0.10
863 298 0.20
864 44 0.03
865 8 0.01
867 9 0.01
869 1 0.00
871 1 0.00
874 1 0.00
875 149 0.10
876 36 0.02
881 2 0.00
882 1 0.00
883 1 0.00
884 1 0.00
885 1 0.00
886 3 0.00
887 1 0.00
890 1 0.00
891 3 0.00
892 1 0.00
893 1 0.00
894 1 0.00
895 1 0.00
896 2 0.00
898 2 0.00
900 4 0.00
901 123 0.08
902 366 0.25
903 12 0.01
905 11 0.01
906 223 0.15
907 15 0.01
908 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (861 bp):
CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGGTGGGGGGTGTGCGC
ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTG
AATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAGTTTGGGCCAAAACTCCTT
CCAAAAAAATTTTAAAAAATCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAG
TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
AATGGCATTGCTACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACG
GCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGAGCCCGCCCGCGTTCGTTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCGACAGCAGGATCGAC
AGCACGCAGAAGGGGACCCGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCAATCTAAGATTGGACCGG
ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTATTCTTCGTCGA
GGCACCATCATCGGAG
Found at i:16429134 original size:26 final size:26
Alignment explanation
Indices: 16429104--16429156 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16429094 GTTGACTTAG
16429104 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16429130 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16429156 G
1 G
16429157 ATTAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16429505 original size:906 final size:897
Alignment explanation
Indices: 16427198--16430022 Score: 3134
Period size: 902 Copynumber: 3.2 Consensus size: 897
16427188 TAAGCATATG
* * * * * ** * *
16427198 GAGTTCATTCCCAATCTAAGATCAAACCAGACTGAGGGTTGCGATAGTAGGACCGACAGCATGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTTGCAACAACAGGATCGACAGCACGCA
* * * * * * *
16427263 GAA-GGGGACCCTATCGAT-CCTCGGCTTGCACATC-CTGCCCCTCTGGCCGGCTGAGCACCCGC
66 -AAGGGGGACCCGACCAATCCCT-GACTTGCCCATCTC-GCCCCTCTGACAGGCTGAGCACCCGC
* * * * * *
16427325 ACACTCATTTCATGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCG
128 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAAGTTCA
* * * * * * *
16427390 TTCCCAGTCTAAGA-TCGAACCA-GACCTAGGGTTGCAACAGCACATGCTGGGCTCGAGCATGTG
193 TTACCAATCTAAGATTAG-A-CAGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTG
* * * * * *
16427453 TTGGTGCCGCATTTTTCTTTGACGGGGCACC---ATC---G--TCG---GAGAACCTGACCGGCG
256 CTGGTGTCGCATTATTCTTCGTCGAGGCACCAATATCGGAGCATCGTCAGAGAACCTGACCGGCG
* * * *
16427507 GCATTAGGGTTTCGGCGATCGGGGGGTCGG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
321 GCGTTGGGGTTCCGGCGATCGGGGGG--GGAGGGGGTGTGCGCACATGATGTGCGATGGCTGCTG
* * * * *
16427571 GTACTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACGCCCCCTTAAAG
384 GTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACGCACACCCCCTTAAAG
* * *
16427636 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
449 AGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGCGAACACTTTT
* * * * * *
16427701 TTCAAATGGTCACAAAGTCTTGTA-AACCTCGAGTTTTTGGCTGAATTTTTTTATGCATGCCAAA
514 TTCAAATGGTCACAAAATATTGTACAA-TTCGAGTTTTTAGCTGAATATTTTTATGCATGCCAAC
* * * * *
16427765 AAAAATACAGGGATCACGTCTACCCAGTTTGGGGCAAAAACTCCTTTCAAAAAAATTTTAAAAAA
578 AAAAATACAGGTATCACGTCTACCAAGTTT-GGGC----CCTCCTTCCAAAAAAATGTTAAAAAA
* *
16427830 TCAC-AAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC-GAGTCGTCTTGCCATGAAA
638 TC-CGAAACCGCAAAAACTTTTAAAAATCGTGAAAAATAGAAAACTG-GTCGTCTTGCCATGAAA
* * * * * * *
16427893 CTTCACGTTAAGGCTTAAAGGACCATTGTATCAATTTACAAGCCATAAAAATGTCATTGGTA-GC
701 CTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
* ** * * *
16427957 AGAAATATGAAGATGTGCCTAAACCCACCTTTCACCCTATCGATCCACGGCTTGAGCATCCCGTC
766 AGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCATC
* ** *
16428022 TCTCTGGCCG--GT-GTAG------TGCCCG-CC--C-GCTTATTTCGTCGGTTGGCTTAGGCAT
831 TCTCTGGCCGACGTAG-AGCCCACCCGCCCGCCCGGCGGCTCGTTTCATCGGTTGGCTTAGGCAT
* *
16428074 TCG
895 ACA
* * * * ** *
16428077 GAGTTCATTCCCAGTCTAAGATCAGCCCAGA-TCAAGGGTTCCGATAGTAGGATCGACAGCATGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACT-AAGGGTTGCAACAACAGGATCGACAGCACGC
* * * * * * * *
16428141 AGAA-GGGGACCCGACCGATCCCCGACTTGCGCATCCCGCTCCTCTGGTC-GGCTAAGCGCCCGC
65 A-AAGGGGGACCCGACCAATCCCTGACTTGCCCATCTCGCCCCTCT-GACAGGCTGAGCACCCGC
*
16428204 ACGCTCGTTTCGTGGGTTGAC-T-----T----AG----------------GCATACGAAGTTCA
128 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAAGTTCA
* * * *
16428243 TTACCAATCTAAGATTGGACAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGTCATGTGCT
193 TTACCAATCTAAGATTAGACAGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCT
* * * *
16428308 GGTGTCGCATTATTCTTCGTCGGGGTACCAATGTTGGAGCATCGTCAGAGAACCTGACCGGCGGC
258 GGTGTCGCATTATTCTTCGTCGAGGCACCAATATCGGAGCATCGTCAGAGAACCTGACCGGCGGC
* *
16428373 GTTGGGGTTTCGGCGATCGGGGGGGTAGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTAC
323 GTTGGGGTTCCGGCGATCGGGGGGGGAGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTAC
* *
16428438 TTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCA
388 TTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACGCACACCCCCTTAAAGAGCA
*
16428503 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGCGAACACTTTTTTCA
453 TTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGCGAACACTTTTTTCA
* * * *
16428568 AATGGTCACAAAATCTTTTACAATTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
518 AATGGTCACAAAATATTGTACAATTCGAGTTTTTAGCTGAATATTTTTATGCATGCCAACAAAAA
*
16428633 TACAAGG-AT-ACGTCTACCAGGTTTGTGGCCAAAACTCCTTCCAAAAAAATGTTAAAAAATCCT
583 TAC-AGGTATCACGTCTACCAAGTTTG-GGCC----CTCCTTCCAAAAAAATGTTAAAAAATCC-
*
16428696 G-AACCGTAAAAACTTTTAAAAATCGTGAAAAATAGAAAA-TGAGTCGTCTTGCCATGAAACTTC
641 GAAACCGCAAAAACTTTTAAAAATCGTGAAAAATAGAAAACTG-GTCGTCTTGCCATGAAACTTC
16428759 ACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATT-GCTACACAGA
705 ACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGC-ACACAGA
* *
16428823 AATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATTTCT
769 AATATGAAGATGTACCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCATCTCT
** * * *
16428888 CTGGCCGGTGTA-ATGCCCGCCCGCCCGCCCGTTC-GCTCGTTTCGTCGGTTGGCTTAGGCATAC
834 CTGGCCGACGTAGA-GCCCACCCGCCCGCCCG-GCGGCTCGTTTCATCGGTTGGCTTAGGCATAC
*
16428951 G
897 A
* * * * ** *
16428952 GAGTTTATTCCCAGTCTAGGGTCAGACCATA-TCAAGGGTTGCAACCGCAGGATCGACAGCACGT
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACT-AAGGGTTGCAACAACAGGATCGACAGCACGC
* * * * *
16429016 AGAGGGGGACTCGACCAATCCCTGACTTGCCCATC-CGGCCCCTCTGACCGGTTGAGCGCCCGCA
65 AAAGGGGGACCCGACCAATCCCTGACTTGCCCATCTC-GCCCCTCTGACAGGCTGAGCACCCGCA
*
16429080 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCAT
129 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAAGTTCAT
* * *
16429145 TCCCAATCTAAGATTAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGTTG
194 TACCAATCTAAGATTAGACAGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTG
* * *
16429210 GTGTCGTATTTTTCTTCGTCGAGGCACC-ATCATCGGAGCATCG-CGGGAGAACCTGACCGGCGG
259 GTGTCGCATTATTCTTCGTCGAGGCACCAAT-ATCGGAGCATCGTC-AGAGAACCTGACCGGCGG
* * * *
16429273 CATTTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGTGCGCAGATGATGTGCGATGGGTGC
322 C-GTTGGGGTTCCGGCGATC-GGGGGG--GGAGGGG-GTGTGCGCACATGATGTGCGATGGCTGC
*
16429338 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACGCACACCCCCTTAA
382 TGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACGCACACCCCCTTAA
* * * *
16429403 AGAGCATTTGAGATTTTATAAGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
447 AGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGCGAACACTT
*
16429468 TTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATATTTTTATGCATGCCAA
512 TTTTCAAATGGTCACAAAATATTGTACAATTCGAGTTTTTAGCTGAATATTTTTATGCATGCCAA
* * * * *
16429533 CAAAAATACAGGTATCACGTCTACCAAGTTTGGGGCCTCCTTCCGAGAACATTTTAAAAAATCCG
577 CAAAAATACAGGTATCACGTCTACCAAGTTTGGGCCCTCCTTCCAAAAAAATGTTAAAAAATCCG
* * * *
16429598 AAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACTGGTTGTCTTGCCATGAAACTTCAC
642 AAACCGCAAAAACTTTTAAAAATCGTGAAAAATAGAAAACTGGTCGTCTTGCCATGAAACTTCAC
* **
16429663 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
707 GTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAAT
* *
16429728 ATGAAGATGTACCTAAACCCACCTACCACCCTATCAATCCATGGCTTGCGCATCCCGTCTCTCTG
772 ATGAAGATGTACCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCATCTCTCTG
* * *
16429793 GCCGACGTAGAGCCCACCCGCCCGTCTGGCGGTTCGTTTCATCGGTTGGCTTAGGCATACA
837 GCCGACGTAGAGCCCACCCGCCCGCCCGGCGGCTCGTTTCATCGGTTGGCTTAGGCATACA
* * * * * * ***
16429854 GAGTTCATTCCCGGTCTAATATCTGATCGGACTGAGGGTTGTGGCAACAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTTGCAACAACAGGATCGACAGCACGCA
* * * * *
16429919 AAGGGGGACCCGACCGATCCTTGGCTTGCGCATCTCGCCCCTCTGGCAGGCTGAGCACCCGCACG
66 AAGGGGGACCCGACCAATCCCTGACTTGCCCATCTCGCCCCTCTGACAGGCTGAGCACCCGCACG
*
16429984 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
131 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
16430023 TGAGTCTAAG
Statistics
Matches: 1669, Mismatches: 188, Indels: 155
0.83 0.09 0.08
Matches are distributed among these distances:
852 2 0.00
853 86 0.05
854 2 0.00
856 1 0.00
859 1 0.00
861 6 0.00
862 150 0.09
863 291 0.17
864 46 0.03
865 3 0.00
869 2 0.00
871 5 0.00
872 2 0.00
873 1 0.00
874 4 0.00
875 147 0.09
876 1 0.00
878 2 0.00
879 120 0.07
880 5 0.00
881 1 0.00
885 2 0.00
900 3 0.00
901 126 0.08
902 402 0.24
903 13 0.01
905 8 0.00
906 222 0.13
907 15 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (897 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTTGCAACAACAGGATCGACAGCACGCA
AAGGGGGACCCGACCAATCCCTGACTTGCCCATCTCGCCCCTCTGACAGGCTGAGCACCCGCACG
CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAAGTTCATTA
CCAATCTAAGATTAGACAGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGT
GTCGCATTATTCTTCGTCGAGGCACCAATATCGGAGCATCGTCAGAGAACCTGACCGGCGGCGTT
GGGGTTCCGGCGATCGGGGGGGGAGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTG
GCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACGCACACCCCCTTAAAGAGCATTT
GAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGCGAACACTTTTTTCAAAT
GGTCACAAAATATTGTACAATTCGAGTTTTTAGCTGAATATTTTTATGCATGCCAACAAAAATAC
AGGTATCACGTCTACCAAGTTTGGGCCCTCCTTCCAAAAAAATGTTAAAAAATCCGAAACCGCAA
AAACTTTTAAAAATCGTGAAAAATAGAAAACTGGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
TAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG
TACCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTA
GAGCCCACCCGCCCGCCCGGCGGCTCGTTTCATCGGTTGGCTTAGGCATACA
Found at i:16430117 original size:159 final size:159
Alignment explanation
Indices: 16429826--16430191 Score: 468
Period size: 159 Copynumber: 2.3 Consensus size: 159
16429816 GTCTGGCGGT
* * * * * *
16429826 TCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCG-GTCTAATATCTGATCGGACTGAG
1 TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT-CCGAGTCTAAGATCTGACCGAACTGAG
* * * ** *
16429890 GGTTGTGGCAACAGGATCGACAGCACGCAAAGGGGGACCCGACCGATCCTTGGCTTGCGCATCTC
65 GGTTGCGGCAACAGGATCGACAGCACACAAAGGGAGACCCGACCGATCCCCGGCTTGCGCATCCC
16429955 GCCCCTCTGGCAGGCTGAGCACCCGCACGC
130 GCCCCTCTGGCAGGCTGAGCACCCGCACGC
* *
16429985 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTGAGTCTAAGAT-TGAACCGAACTGAG
1 TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCGAGTCTAAGATCTG-ACCGAACTGAG
** * *
16430049 GGTTGCGGCAACAGGATCGGTAGCACACATAGGGAGACCC-AGCGAATCCCCGGCTTGCGCATCC
65 GGTTGCGGCAACAGGATCGACAGCACACAAAGGGAGACCCGACCG-ATCCCCGGCTTGCGCATCC
* * *
16430113 CGCCCTTCTGGCCGGCTGAGCACCCGCACGT
129 CGCCCCTCTGGCAGGCTGAGCACCCGCACGC
* * *
16430144 TCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
1 TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCGAGTCTAAG
16430192 CATACGGAGT
Statistics
Matches: 178, Mismatches: 26, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
158 7 0.04
159 171 0.96
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (159 bp):
TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCGAGTCTAAGATCTGACCGAACTGAGG
GTTGCGGCAACAGGATCGACAGCACACAAAGGGAGACCCGACCGATCCCCGGCTTGCGCATCCCG
CCCCTCTGGCAGGCTGAGCACCCGCACGC
Found at i:16430201 original size:26 final size:26
Alignment explanation
Indices: 16430165--16430217 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16430155 GTTGACTTAG
16430165 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16430191 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16430217 G
1 G
16430218 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16431870 original size:904 final size:891
Alignment explanation
Indices: 16429976--16432898 Score: 3380
Period size: 904 Copynumber: 3.3 Consensus size: 891
16429966 AGGCTGAGCA
* * * * * * *
16429976 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTGAGTCTAAGAT-TGAAC
1 CCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTC-CAGTCTAAGATCAG-A-
* * * * * * * *
16430040 CGAACTGAGGGTTGCGGCAACAGGATCGGTAGCACACA-TAGGGAGACCCAG-CGAATCCCCGGC
63 CGGACCGAGGGTTGC-ACAGCAGGATCGGCA-CA-ACAGAAGGGGGACCCGGTCG-ATCCCCGGC
* * * * **
16430103 TTGCGCATCCCGCCCTTCTGGCCGGCTGAGCACCCGCACGTTCATTTTGTGGGTTGACTTAGGCA
124 TTACGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
* * *
16430168 TACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGA
189 TACGGAGGTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGA
* * ** *
16430233 GGGTTACGGCAGCACATGCTAGGCTC-AGGAATGTGTTGGT-GCTATATTTTTCTTCGTCGGGGC
254 GGGTTGC-GCAGCACATGCTGGGCTCGA-GCTTGTGTTGGTGGC-GTATTTTTCTTCGTCGGGGC
** * * * ** *
16430296 ACCATCGTCAGAGCATCGCCGAAGAACCTGATTGACGGCATTAGGGTTCCGACGATCGGGCGGGC
316 ACCATCACCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGC
* *
16430361 CGGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTCCTTGGCCCTTATATTGGCCCCTTATC
380 CGGGGGGTGTGTGCACAAGATGTGCGATGGGTGCT-GTCCTTGGACCTTATATTGGCCCC-TATC
*
16430426 ACTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTC
443 ACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
16430490 AGTAGCCATTAAATTGTTTGAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTT
508 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
16430555 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTT
573 TGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* * * *
16430620 GGGTCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACTGCAAAAAGTTTCAAAAATCGT
638 GGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
** * * * *
16430685 G--AGGTAGAAAACGAAGTCCTCTTGCAATG-AACTTAACG-GAAAGGCTTAA-GGACCAGTGTG
702 GAAAAATAGAAAACG-AGTCCTCTTGCCATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTA
16430745 T-AATTTACAAGCCAT-AAAATGGGCATTGGCACGTAAGAAATATG-AGATGTGGCCTAAAACCC
765 TGAATTTA-AAGCCATAAAAAT--GCATTGGCACGT-AGAAATATGAAGATGT-GCCT-AAACCC
* * * *
16430807 ACCTACCCAACCCTAATCAATCCATGGACTTGCGCAT-CCGATCTGTCTGGCTGGCGTAGTGCCC
824 ACCTA-CC-ACCCT-ATCGATCCA-CGACTTGCGCATCCCG-TCTCTCTGGCCGGCGTAGTGCCC
*
16430871 GCTG-CCG
884 CCTGCCCG
* * *
16430878 CCCACCCAGCTCATTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTTCCAGTCTAAGATCGGAC
1 CCCGCCC-GCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCA-TTCCAGTCTAAGATCAGAC
* * * * *
16430943 GCAAACCGA-GGTTGCATAGCAGGAATCGGCAATCAACATGGAGGGGGA-CTGGCCGATCCCCGG
64 G--GACCGAGGGTTGCACAGCAGG-ATCGGC-A-CAACA-GAAGGGGGACCCGGTCGATCCCCGG
** * * * * * *
16431006 CTTGTGCATCCCGCCCCTCTAGTCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGC
123 CTTACGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGC
*
16431071 ATACGGAGCGT-ATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCGGACCAGATC
188 ATACGGAG-GTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATC
* ** * * **
16431135 AAGGGTTGCAGCATTACATGCTGGGCTCGAGCTTGTGGTGGTGGCGCATTTTTCTTCACCGGGGC
252 GAGGGTTGC-GCAGCACATGCTGGGCTCGAGCTTGTGTTGGTGGCGTATTTTTCTTCGTCGGGGC
* * * *
16431200 ACCATCACCGGAGCATCACCGGAGAACTTGACCGACGACGTTGGGGTTCCGACGATCGGGAGGGT
316 ACCATCACCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGC
* *
16431265 CGGGGGG-GTGTGCACTTAAGATGTGCGATGGGTGCTAGTCCTTGGGCCTTACATTGGCCCTCTA
380 CGGGGGGTGTGTGCAC--AAGATGTGCGATGGGTGCT-GTCCTTGGACCTTATATTGGCCC-CTA
* * ** * *
16431329 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGTGTTTGAGATTTTACAGTTTTGCTA
441 TCACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
16431394 CCAGTAG-TAGTTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACGAAAA-CTTGTAC
506 CCAGTAGCCA-TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTAC
* * * * *
16431456 ACTTTGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATAGAAGGATCATGTCTTCCAA
569 ACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * *
16431521 GTTTGGGGCCAAAAATTCTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCCAAAAT
634 GTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * * *
16431586 TGTGAAAAATAGAAAATGAGTCATCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
699 CGTGAAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
16431651 ATGAATTTAGAAGCGATAAAAATCGCATTGGCAAGTAGAAATATGAAGATGTGCCTAAACCCACC
764 ATGAATTTA-AAGCCATAAAAAT-GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
16431716 TACCACTCTATCGATCCACGACTTGTGTATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCC
827 TACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-CCTGCCC
16431781 G
891 G
*
16431782 CCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACT
1 CCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCC-AGTCTAAGATCAGAC-
*
16431847 GGACCGAGGGTTGCGACAGCAGGATCGGCAGCACACA-AAGGGGGACCCGGTCGATCCCTGGCTT
64 GGACCGAGGGTTGC-ACAGCAGGATCGGCA-CA-ACAGAAGGGGGACCCGGTCGATCCCCGGCTT
* * * ** *
16431911 ACCCATCCCGCCCCTCTGGCCGGCTGAGTAACTACATGCTCG-TTCAT-GG--G---T-----T-
126 ACGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
* *
16431963 --GA---C-TT---AG-----GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGG
191 CGGAGGTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGG
* * *
16432014 GTTGCGAAAGCACATGCTGGGCTCGGGCATT-TGTTGGTGCCGTATTTTTCTTCGTCGGGGCACC
256 GTTGCG-CAGCACATGCTGGGCTCGAGC-TTGTGTTGGTGGCGTATTTTTCTTCGTCGGGGCACC
*
16432078 ATCACCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGCGGCCGG
319 ATCACCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGCCGG
* *
16432143 GGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGCTACTTGGACCTTATATTGGCCCCCTATCA
383 GGGGTGTGT--GCACAAGATGTGCGATGGGTGCTG-TCCTTGGACCTTATATTGG-CCCCTATCA
16432208 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
444 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
16432273 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
509 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
* * * * *
16432338 GAGTTTTTAGCTGAATTTTTTTATGCATACCAAAAAAAATTCAGGGATCACGTCTACCAAGTTTA
574 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
* * *
16432403 TGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATG
639 GGGCCAAAACTCCTTC-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
* *
16432468 AAAAATAGAAAACGAGTCCTATTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
703 AAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * ** *
16432533 ATTTAAATCCATAAAAATGCTATTGGCACGCAAAAATATGAAGATGTATCTAAACCCGCCTACCA
768 ATTTAAAGCCATAAAAATGC-ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* **
16432598 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCTGCCCG
832 CCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-CCTGCCCG
* * * *
16432659 CCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACC
1 CCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATT-CCAGTCTAAGATCAGA-C
* * * * *
16432724 GGACTGAGCGTTGCAGCAGTAGGATC-G-ACAGCACGCAGAGGGGACCCGGTCGATCCCCGGCTT
64 GGACCGAGGGTTGCA-CAGCAGGATCGGCACAACA-GAAG-GGGGACCCGGTCGATCCCCGGCTT
* *
16432787 ACGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCGTA
126 ACGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
* * * *
16432852 CGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCTAGTCTAA
191 CGGAGGTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
16432899 AATTAGACCG
Statistics
Matches: 1717, Mismatches: 221, Indels: 165
0.82 0.11 0.08
Matches are distributed among these distances:
873 2 0.00
874 4 0.00
875 156 0.09
876 191 0.11
877 291 0.17
878 118 0.07
880 3 0.00
883 3 0.00
887 2 0.00
888 1 0.00
890 1 0.00
891 2 0.00
894 1 0.00
895 3 0.00
898 3 0.00
900 2 0.00
901 11 0.01
902 100 0.06
903 165 0.10
904 308 0.18
905 198 0.12
906 94 0.05
907 24 0.01
908 29 0.02
909 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
CCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCAGTCTAAGATCAGACGG
ACCGAGGGTTGCACAGCAGGATCGGCACAACAGAAGGGGGACCCGGTCGATCCCCGGCTTACGCA
TCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
GTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGC
GCAGCACATGCTGGGCTCGAGCTTGTGTTGGTGGCGTATTTTTCTTCGTCGGGGCACCATCACCG
GAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTG
TGCACAAGATGTGCGATGGGTGCTGTCCTTGGACCTTATATTGGCCCCTATCACTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT
GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
CTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
GAGTCCTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAGCCATA
AAAATGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
GACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCTGCCCG
Found at i:16433048 original size:189 final size:184
Alignment explanation
Indices: 16432689--16433087 Score: 591
Period size: 189 Copynumber: 2.1 Consensus size: 184
16432679 GTTGGCTTAG
* * * *
16432689 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACTGAGCGTTGCAGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAAATTAGACCGGACCGAACGTTGCAGCAGAAGGATCGACA
*
16432754 GCACGCAGAGGGGACCCGGTCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCACC
66 GCACGCAGAGGGGACCCGGTCGATCCCCGGCTTACACATCCCACCCCTCTGGCCGGCTGAGCACC
* *
16432819 CGCACGCTCGTTTCATGGGTTGACTTAGGCGTACGGAGTTCATTCCTAGTCTAA
131 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16432873 GCATATGGAGTTCATTCCTAGTCTAAAATTAGACCGGACCGAACGTTGCGGTAGAAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAAATTAGACCGGACCGAACGTTGCAGCAGAAGGATCGACA
* * * *
16432938 GCACGTAGAAGGGGACCCTGTCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCTGGCTGGCTGA
66 GCACGCAG-AGGGGACCCGGTCGATCCCCGGCTTACACATCCCACCCCTCTGGC---C-GGCTGA
* * *
16433003 GCACCCGCACGCTCGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAG
126 GCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
16433062 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16433088 GATCGGATCG
Statistics
Matches: 190, Mismatches: 20, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
184 64 0.34
185 41 0.22
188 1 0.01
189 84 0.44
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.23
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAAATTAGACCGGACCGAACGTTGCAGCAGAAGGATCGACA
GCACGCAGAGGGGACCCGGTCGATCCCCGGCTTACACATCCCACCCCTCTGGCCGGCTGAGCACC
CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16433071 original size:26 final size:26
Alignment explanation
Indices: 16433035--16433086 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
16433025 GGTTGACTTT
16433035 GGCATACGGAGTTCATTCCCAGTCTA
1 GGCATACGGAGTTCATTCCCAGTCTA
16433061 GGCATACGGAGTTCATTCCCAGTCTA
1 GGCATACGGAGTTCATTCCCAGTCTA
16433087 AGATCGGATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (26 bp):
GGCATACGGAGTTCATTCCCAGTCTA
Found at i:16435747 original size:26 final size:26
Alignment explanation
Indices: 16435711--16435763 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16435701 GTTGACTTAG
*
16435711 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16435737 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16435763 G
1 G
16435764 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16436125 original size:878 final size:883
Alignment explanation
Indices: 16434845--16436981 Score: 2597
Period size: 877 Copynumber: 2.4 Consensus size: 883
16434835 GTTGGCTTAG
* *** * **
16434845 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAGTAGACTGAGGGTTGCGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCACATACTGGG
*
16434910 CTCGGGCATGTGTTGGTACCGTATTTTCTTCGTCGAGGCACCATCTTCGGAGCATCACCGGAGAA
66 -TCGGGCATGTGTTGGT--CG-A-------CG--G-GGCACCATCGTCGGAGCATCACCGGAGAA
* * * *
16434975 CCTGACCGACGGTATTGTGGTTCCAACGATCGGGTGGGCCGGGGGGGTGTGCGCACATGATGTGC
117 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGGTGTGCGCACATGATGTGC
* *
16435040 GATGGGTTCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAAGCTCGAGAACTCACA
181 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* ** * *
16435104 CCTCCTTAAAGAGTGTTTTAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
246 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
16435169 GGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTAT
311 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
16435234 GCATGCCAACAAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAAATCCTTCTGAAAAA
376 GCATGCCAAC-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* *
16435299 ATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTT
440 ATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
* * * *
16435364 GCCATTAAACGTAACGTGAAGTCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
505 GCCATGAAACGTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
16435429 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG-C
570 TTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTC
*
16435493 CTATCCCGTCTCTCTGGC-T-G-G-CGCAATG-CCCAC-CCCGCCCGTTTCGTCGGTTGGCTTAG
635 C-ATCCCGTCTCTCTGGCATAGTGCCGCACTGCCCCACACCCGCCCGTTTCGTCGGTTGGCTTAG
* * * * * **
16435552 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGAGTTACGGCAGTAGGATCGGTA
699 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCAAGATCGACA
* * ** * *
16435617 ACACGCAGAAGGGGACCC-AGCCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGTCGGTTGAGCA
764 GCACGTAGAAGGGGACCCGA-CCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCA
*
16435681 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
828 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
16435737 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCACATACTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCACATACTGGG
* * * **
16435802 TGCGGGCATGTGTTGGT-GACGGGGCACCATCATCGGAGCATCGCTGGAGAACCTGACCTACGGC
66 T-CGGGCATGTGTTGGTCGACGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGC
* * *
16435866 ATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGTGTGCACACATGATGTTCGATGGGTGCTGGTA
130 ATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
16435931 CTTGGCCCTTATATTGGGCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
195 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
16435996 ATTTGAGATTTTACAGGTTTGCTACCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTC
260 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
16436061 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
325 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* ** * *
16436126 ATAAAAGGATCACGTCTACCAAGTTTGCAGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCC
390 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCC
** ** *
16436191 GAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA-GTTCA
455 GAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACG-TCA
* *
16436255 CGTGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAA
519 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAA
* * * *
16436320 TATGAAGATGTGCCCAAGCCCACCTACCACCCTATCGATCCACGACTTGTGCATCCCGTCTCTCC
584 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTCCATCCCGTCTCT--
** * * * * *
16436385 AACCAGCATAGTGCCCGC-CCG-CCCACCTGCCCGCTCGTTTCGTCGGTTGGATTAGGCATATGG
647 --CTGGCATAGTG-CCGCACTGCCCCA-C-ACCCGCCCGTTTCGTCGGTTGGCTTAGGCATACGG
* * ** *
16436448 AGTTCATTCCTAGTCTAAGATCCA-ATCAGACCAAGGGTTACGGCAGCAAGATCGACAGCATGTA
707 AGTTCATTCCCAGTCTAAGAT-CAGACCAGACTGAGGGTTACGGCAGCAAGATCGACAGCACGTA
* * * *
16436512 GAAAGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACTCGCACG
771 GAAGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACG
* ** * *
16436577 CTAGTTTCACGGGTTGACTTAGGCATACGAAATTCATTCCCAGTCTAA
836 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** ** * * * * * * * **
16436625 G-AT-CGGACTGGA--CGGATGGT-T--G--C-GGCAGCA-C-A-TGTTGGGCTCGGGCATGTAC
1 GCATACGGAGTTCATTCCCA--GTCTAAGATCAGACCGGACCGAGGGTTGCGAT--AGCACATAC
* * ** * * * *
16436677 CGGTGTC--GCAT-TTTTCTTCGTCGGGGCACCATCGTCAGAGCATCACTGGAGAACTTGACCGG
62 TGG-GTCGGGCATGTGTTGGTCGACGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGG
* * * * * * *
16436739 TGGCAATAGGGTTCCGACGATCAGGGGGCCGAGGGGGGGTGTGTGCAAATAATGTGCGATGGGTG
126 CGGCATTGGGGTTCCGACGATCGGGGGGCC--GGGGGGGTGTGCGCACATGATGTGCGATGGGTG
16436804 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
189 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
16436869 AAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
254 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
16436934 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA
319 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
16436982 ATATGAAGAT
Statistics
Matches: 1089, Mismatches: 130, Indels: 65
0.85 0.10 0.05
Matches are distributed among these distances:
876 5 0.00
877 361 0.33
878 219 0.20
879 210 0.19
880 6 0.01
881 6 0.01
882 1 0.00
883 2 0.00
884 3 0.00
885 6 0.01
886 12 0.01
887 2 0.00
888 179 0.16
889 4 0.00
891 1 0.00
892 72 0.07
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (883 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCACATACTGGG
TCGGGCATGTGTTGGTCGACGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCA
TTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCG
AACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACGTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTCCATCCCGTCTCTCTGG
CATAGTGCCGCACTGCCCCACACCCGCCCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCAAGATCGACAGCACGTAGAAGGGGACC
CGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16436939 original size:879 final size:868
Alignment explanation
Indices: 16433059--16436981 Score: 4656
Period size: 879 Copynumber: 4.4 Consensus size: 868
16433049 ATTCCCAGTC
* * **
16433059 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGACTGAGAGTTACGATAGCACATGC
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAG-GTTGCGGCAGCACATGC
** * * * * *
16433123 TGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTTGCCAGGGCACCATCGTCGGAGCATCACCG
64 TGGGCTCGGGCATGTACTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCACCG
* * * * *
16433188 GAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGA
129 GAGAACCTGACCGACGGCAATGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCACACATGA
* * * * *
16433253 TGGGTGATGGGTGCTGGTATTTGGCCCTTATCTTGGCCCCCTATCCCTCATTAAACCTCGAGAAC
193 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
16433318 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
258 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
16433383 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAACTTT
323 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * *
16433448 TTTGTGCATGCCAACAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAAATCCTTCCGA
388 TTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
** ** * * *
16433513 AAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAGACGAGTCG
453 AAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCG
* * *
16433578 TCTTGCCATGAAATTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
518 TCTTGCCATTAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* ** * * *
16433643 GGTATTGGCACACAAAAATATGAAGATGTGCCTAAACCCAGCTACTACCCTATCGATCCACGGCT
583 GGCATTGGCATGCAGAAATATGAAGATGTGCCT-AACCCACCTACCACCCTATCGATCCACGGCT
* * ** * *
16433708 TGTGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGC-CTGCCCGCTTGTCCGCTTGTTTTGTCGG
647 TG-GCATCCCGTCTCTC---CCGG-CTAGTGCCCGCAC-GCCCAC--CCCCGCTCGTTTCGTCGG
* * * * * * ***
16433772 TTGGCTTAGGTAAACGGAGTTTATTCACAGTCTAAGATCAGACCGGACTGAGGGTTGTAGCAGCA
704 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTACGGCAGCA
** * * * *
16433837 AGATCGGTAGCATGTAGATGGGGACCCGACCGATCCCCAGCTTGCACA-CCCTGCCCCTCTGGCC
769 AGATCGACAGCACGTAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCC-GCCCCTCTGGCC
* *
16433901 GGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTT
833 GGCTGAGCACCCGCACGCTAGTTTCGTGGGTTGAC-T
* * *
16433938 AGGCATACAGAGTTCATTCCTAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGA
1 -----T--AG-G-------C-A---T-A-C----GGAGTTCATTCCCAGTCTAAGATCGGACTGG
** *
16434003 ACCGAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGG
41 ACCGAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTACTGGTGCCGCATTTTTCTTCGTCGGG
* * * *
16434068 GCACCATCGTCAGAGCATCACCGGAGAACTTGACCGGCGGCATTGGGGTTCC-AGTGATCGGGGG
106 GCACCATCGTCAGAGCATCACCGGAGAACCTGACCGACGGCAATGGGGTTCCGA-CGATC-GGGG
*
16434132 GGCTGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
169 GGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
16434197 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
234 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
16434262 TG-CAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTAC
299 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
*
16434326 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT-AGAGTGATCACGTCTACCA
364 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAG-GATCACGTCTACCA
* * * *
16434390 GGTTTGGGGCCAAAACT-ATTTCCAAAAAAATTTTAAAAAATCCCGAA-CATCAAAAAGTTTTTA
428 AGTTTGGGGCCAAAACTCCTTT-CGAAAAAATTTTAAAAAATCCCGAACCAT-AAAAAGTTTTAA
* *
16434453 AAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCA
491 AAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATTAAAGTTCACGTGAAGGCTTAAGGGACCA
* * * *
16434518 ATGTATGAATTTACAACCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTTAACC
556 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC-TAACC
*
16434583 CACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCG
620 CACCTACCACCCTATCGATCCACGGCTTG-GCATCCCGTCTCTC---CCGGC-TAGT---GCCCG
* * *
16434648 CTCGCCCGCCCACCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
677 CACGCCC-ACC-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * * *
16434713 ATCAGACCGGATTGAGGGTTAGGGTAGC-AGTGTCGACAGCACATGGAGGGGGACCCGACCGAAC
740 ATCAGACCAGATTGAGGGTTACGGCAGCAAG-ATCGACAGCACGTAGAAGGGGACCCGACCGATC
* * ** * * * * * * *
16434777 CCCGGCTTGCCCAACCCGCCCCTCCCGCTGGCTGAACGCCCACATGGTCA-TTTCGTGGGTTGGC
804 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCT-AGTTTCGTGGGTTGAC
16434841 T
868 T
* * * *
16434842 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAGTAGACTGAGGGTTGCGGCAGCACATACT
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGA-GGTTGCGGCAGCACATGCT
** * * * * *
16434907 GGGCTCGGGCATGTGTTGGTACCGTA-TTTTCTTCGTCGAGGCACCATCTTCGGAGCATCACCGG
65 GGGCTCGGGCATGTACTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCACCGG
* * * * *
16434971 AGAACCTGACCGACGGTATTGTGGTTCCAACGATCGGGTGGGCCGGGGGGGTGTGCGCACATGAT
130 AGAACCTGACCGACGGCAATGGGGTTCCGACGATCGGG-GGGCCGGGGGGGTGTGCACACATGAT
* *
16435036 GTGCGATGGGTTCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAAGCTCGAGAACT
194 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* ** * *
16435100 CACACCTCCTTAAAGAGTGTTTTAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
259 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
16435165 AATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTT
324 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
16435230 TTATGCATGCCAACAAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAAATCC-TTCTG
389 TTGTGCATGCCAAC-AAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-G
* * * *
16435294 AAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTC
452 AAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTC
* * *
16435359 GTCTTGCCATTAAACG-TAACGTGAAGTCTTAACGGACCATTGTATGAATTTACAAGCCATAAAA
517 GTCTTGCCATTAAA-GTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
16435423 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
581 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCT-AACCCACCTACCACCCTATCGATCCACGG
* * * *
16435488 CTTGCCTATCCCGTCTCT-CTGGCT-G-G--CGCAATGCCCA-CCCCGCCCGTTTCGTCGGTTGG
645 CTTGGC-ATCCCGTCTCTCCCGGCTAGTGCCCGC-ACGCCCACCCCCGCTCGTTTCGTCGGTTGG
* * * *
16435547 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGAGTTACGGCAGTAGGAT
708 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTACGGCAGCAAGAT
** * * * * *
16435612 CGGTAACACGCAGAAGGGGACCC-AGCCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGTCGGTT
773 CGACAGCACGTAGAAGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
*
16435676 GAGCACCCGCACGCTCGTTTCGTGGGTTGACT
837 GAGCACCCGCACGCTAGTTTCGTGGGTTGACT
* * ** * ** *
16435708 TAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCA-GTCTAAGATCAG-AC
1 TAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CGGACTGGA--CCGAGGT-TGCG-GCAGCAC
** * * * ** * * ** * *
16435771 CGGACCGAGGGTTGCGATAGCACATACTAGGTGCGGGCATGTGTTGGT-GACGGGGCACCATCAT
60 ATG--C-TGGGCT-CG--GGCATGTACT-GGTGC-CGCAT-TTTTCTTCGTCGGGGCACCATCGT
* * * * * *
16435835 CGGAGCATCGCTGGAGAACCTGACCTACGGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGT
116 CAGAGCATCACCGGAGAACCTGACCGACGGCAATGGGGTTCCGACGATCGGGGGGCCGGGGGGGT
* * *
16435900 GTGCACACATGATGTTCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCTTCATCA
181 GTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
16435965 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCTA
246 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
16436030 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
311 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
**
16436095 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGCAGCCAA
376 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAA
* *
16436160 AACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATA
441 AACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTAAAAATCATGAAAAATA
* * *
16436225 GAAAACGAGTCGTCTTGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCTTTGTATGAATTTACA
506 AAAAACGAGTCGTCTTGCCATTAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
16436290 AGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCCAAGCCCACCTACCACCCTAT
571 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA-CCCACCTACCACCCTAT
* * *
16436355 CGATCCACGACTTGTGCATCCCGTCTCTCCAACCAGCATAGTGCCCGCCCGCCCACCTGCCCGCT
635 CGATCCACGGCTTG-GCATCCCGTCTCT-C--CCGGC-TAGTGCCCGCACGCCCACC--CCCGCT
* * * * ***
16436420 CGTTTCGTCGGTTGGATTAGGCATATGGAGTTCATTCCTAGTCTAAGATCCA-ATCAGACCAAGG
693 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-CAGACCAGATTGAGG
* * *
16436484 GTTACGGCAGCAAGATCGACAGCATGTAGAAAGGGACCCGACCGATCCCCAGCTTGCGCATCCCG
757 GTTACGGCAGCAAGATCGACAGCACGTAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG
* **
16436549 CCCCTCTGGCCGGCTGAGCACTCGCACGCTAGTTTCACGGGTTGACT
822 CCCCTCTGGCCGGCTGAGCACCCGCACGCTAGTTTCGTGGGTTGACT
* * * *
16436596 TAGGCATACGAAATTCATTCCCAGTCTAAGATCGGACTGGACGGATGGTTGCGGCAGCACATGTT
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGA-GGTTGCGGCAGCACATGCT
* * *
16436661 GGGCTCGGGCATGTACCGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCACTGG
65 GGGCTCGGGCATGTACTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCACCGG
* ** * * ** * *
16436726 AGAACTTGACCGGTGGCAATAGGGTTCCGACGATCAGGGGGCCGAGGGGGGGTGTGTGCAAATAA
130 AGAACCTGACCGACGGCAATGGGGTTCCGACGATCGGGGGGCC--GGGGGGGTGTGCACACATGA
16436791 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
193 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
16436856 TCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
258 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
16436921 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA
323 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
16436982 ATATGAAGAT
Statistics
Matches: 2612, Mismatches: 334, Indels: 191
0.83 0.11 0.06
Matches are distributed among these distances:
865 1 0.00
866 173 0.07
867 4 0.00
868 12 0.00
869 8 0.00
870 6 0.00
871 1 0.00
872 4 0.00
873 2 0.00
874 1 0.00
875 6 0.00
876 15 0.01
877 353 0.14
878 295 0.11
879 460 0.18
880 268 0.10
881 9 0.00
882 5 0.00
883 2 0.00
884 8 0.00
885 11 0.00
886 14 0.01
887 3 0.00
888 179 0.07
889 4 0.00
894 1 0.00
895 1 0.00
896 1 0.00
897 2 0.00
898 1 0.00
899 2 0.00
900 1 0.00
901 5 0.00
902 330 0.13
903 235 0.09
904 35 0.01
905 149 0.06
906 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (868 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGTTGCGGCAGCACATGCTG
GGCTCGGGCATGTACTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCACCGGA
GAACCTGACCGACGGCAATGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCACACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
GTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
AATTTTAAAAAATCCCGAACCATAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCT
TGCCATTAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCATGCAGAAATATGAAGATGTGCCTAACCCACCTACCACCCTATCGATCCACGGCTTGGC
ATCCCGTCTCTCCCGGCTAGTGCCCGCACGCCCACCCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTACGGCAGCAAGATCGACAGCA
CGTAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCG
CACGCTAGTTTCGTGGGTTGACT
Found at i:16437279 original size:26 final size:26
Alignment explanation
Indices: 16437250--16437302 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16437240 GTTGACTTAG
16437250 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
* *
16437276 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
16437302 G
1 G
16437303 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:16438184 original size:26 final size:26
Alignment explanation
Indices: 16438148--16438200 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16438138 GTTGACTTAG
*
16438148 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16438174 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16438200 G
1 G
16438201 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16439068 original size:26 final size:26
Alignment explanation
Indices: 16439038--16439090 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16439028 GTTGACTTAG
16439038 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16439064 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16439090 G
1 G
16439091 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16440857 original size:26 final size:26
Alignment explanation
Indices: 16440815--16440865 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16440805 GTTGACTTAG
16440815 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* * *
16440841 GCATACGGTGTTTATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAATCTA
16440866 TGATCAGATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16441747 original size:26 final size:26
Alignment explanation
Indices: 16441717--16441769 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16441707 GTTGACTTAG
*
16441717 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
*
16441743 GCATATGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
16441769 G
1 G
16441770 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTCTAA
Found at i:16442165 original size:26 final size:26
Alignment explanation
Indices: 16442135--16442187 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16442125 GTTGACTTAG
16442135 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16442161 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16442187 G
1 G
16442188 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16444087 original size:862 final size:873
Alignment explanation
Indices: 16442413--16451869 Score: 9494
Period size: 863 Copynumber: 10.7 Consensus size: 873
16442403 AACCTCGATT
* * *
16442413 AAATGGGGACACTTTTTTCAAATGATCGCAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTT
1 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * ** *
16442478 TTGTGCATGCCAAGAAAAATTCAAGGATCACATCTGCCAAGTTTGGGGTGAAAACTGC-TTCTGA
66 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GA
**
16442542 AAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTC-GAAAATCATGAAAAATAGAAAACGAGTC
130 AAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAG-AAATCATGAAAAATAGAAAACGAGTC
* *
16442606 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCCA-AACAA
194 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAA-AA
* * *
16442670 ATGGCATTGGCATGTAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACAG
258 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
16442735 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCAGCCCGCCTGCCCGCTCGTTTCGTCG
323 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCG-CT---CGCTCGTTTCGTCG
* * * * * *** * *
16442800 ATTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTACAGCAAC
380 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGC
*
16442865 AGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCC
445 AGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* *
16442930 GGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
510 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16442995 G-AT-C-G-G-A-CCAGATCGAGGGTTGCAGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCC
575 GCATACGGAGTATCCAGACCCAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * ** ** **
16443054 GTATTTTTCTTCGCCGGGGCACCATCACCTAAGCATTGTC-GAGAACCTGGTC-AGCGGCATTGG
640 GCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCA-TCACGGAGAACCTGACCGA-CGGCATTGG
* * *
16443117 GGTTTCGACGATC-GAGGGGCC-GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTG
703 GGTTCCGGCGATCAG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
16443180 GCCCTTATATTGG-CCCGTATCCCTTATCAAACCTCGATAACTCACACCCCCTTAAAGAGCATTT
767 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
16443244 GAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
832 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
16443286 AAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
1 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
*
16443351 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
66 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* *
16443416 AAAATTTTAAAAAATCTCAAACCGT-AAAGGTTTCAGAAATCATGAAAAATAGAAAACGAGTCGT
131 AAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAGAAATCATGAAAAATAGAAAACGAGTCGT
*
16443480 CTTGCCATGAAACTTCACGTGAAGGCTTAAAGGATCATTGTAT-AATTTACAAGCCATAAAAATG
196 CTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
16443544 GCATTGTCATGCAGAAATATGAAGATGTGCCTAAACCCAACCTTCCACCCTATCGATCCACCGCT
261 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC-ACCTACCACCCTATCGATCCACGGCT
*
16443609 TGCGCATCCCGTCTCTCTGG-CGGCGTAGTGCCC-CCCGCTCGCTCGTTTCGTCGATTGGCTTAG
325 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
16443672 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGTGGTAGTAGGATCGGCA
390 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATCGGCA
** * * * *
16443737 GCACGCAGAGGGGGACCCGGCCAATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCAC
455 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
16443802 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG-AT-C-G-G
520 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * *
16443863 -A-CCAGACCCAGGGTTGCGGCAGCACTTGCTAGGCTCAGGCATGTGCTGGTGCCACATTTGTCT
585 TATCCAGACCCAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* ** * *
16443926 TCGTCGGGGCACCATCACCGGAGCATCACCAAAAACCTGACCGACGGCGTTGGGGTTCCGGCGAT
650 TCGTCGGGGCACCATCGCCGGAGCATCACGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGAT
* * * * * *
16443991 CAGGGGGTCGAGGGGGTGTGCGCACAAGATGTGTGATGGGTGCTGGTACTTGGTCCTTATATTCG
715 CAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
*
16444056 CCCCC-AT-CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
780 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
16444119 TTTGCTG-CAGTAGCCATT-AAGTGTCTG
845 TTTGCTGCCAGTAGCCATTAAAGTGTCTG
16444146 AAATGGGGACAC-TTTTTCAAATGGTCACAAAAATCTTGTAACACTTCGAG-TTTTAGCTGAATT
1 AAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGT-ACACTTCGAGTTTTTAGCTGAA-T
* *
16444209 GTTTTTGGTGCAATGCCAAACAAAATGCAAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACTC
63 -TTTTT-GTGC-ATGCCAAAAAAAATAC-AAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTC
* * * * **
16444274 CTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAATTGTGAAAAATAGAAA
123 CTTTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTC-AGAAATCATGAAAAATAGAAA
* * * * *
16444339 ATGAGATTAGTCTTGCCGTGAAACTTCACGTGAAAGGCTT--AGGACCATTGAATGAA--T---G
187 ACGAG--TCGTCTTGCCATGAAACTTCACGTG-AAGGCTTAAAGGACCATTGTATGAATTTACAA
* **
16444397 GCCAT-----TGGCA-T-GCA---A-AAATATGAAGATGCGCCTAAACCCACCTACCACGATATC
249 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * *
16444451 GATCCATGGTTTGCGCATCCCGTCTCTCTAGCCAGCGTAGTGCCCGGCCGCCCGCCCGCCCTCTG
314 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C--CCGCCCGCTCG--CTC--
* * *
16444516 GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCGGACCGAACCGAGGGT
371 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
** * * * * * * *
16444581 TGCAGCAACAGGATCGGTAGCATGCAAAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCC
436 TGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCC
* * * * *
16444646 CCTCTAGCCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTC
501 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
16444711 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCGGCAGCA
566 CCAGTCTAAGCATACGGAG-T-A-T--C---C--AGA-C---C-----C-AGGGTTGCGGCAGCA
* * * *
16444776 CATGCTGGGCTC-AGCATGTGCTGGTGCCGTATTTCTCTTCGTCGGGGCACCATCGCCGGAGTAT
611 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCAT
* * *
16444840 CACTGGAGAACCT----GAC-G-A-------T----CG---AGGGGGCCAGGGGGGTGTCCACAC
676 CAC-GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCAGGGGGCCGGGGGGGTGTGCGCAC
*
16444885 ATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
740 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
16444950 CAACTCACA-CCCCTATAAAGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
805 GAACTCACACCCCCT-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
16445014 GTCTG
869 GTCTG
16445019 AAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
1 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * *
16445083 TTGTGGATG-CAAAAAAAATACAACGATCACGTCTAGCACGTTTGGGGCCAAAACT-GTCTTCTG
66 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TTC-G
* ** * *
16445146 -AAAAA-TTAAAAAAAT-CTGAATCGT--AAAGTTTCA-AAATTCATG-CAAATAGAAAACG-GT
129 AAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAGAAA-TCATGAAAAATAGAAAACGAGT
* *
16445203 CGTC-TGCCATGAAACTTCACGTGAAGGCTTTAAGGACCATTGTATGTATTTACAAGCCATAAAA
193 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAA
*
16445267 ATGGCATTGGCATG-A-AAATATGAAGATGTG-CTAAACCCACCTATCACCC--TCGATCCAC-G
258 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* *
16445326 CTTGCGCATTGCTCGTCTCTCT-G-CGGCGTAGTGCCCGCCCGCT---TCATTTCGTCGGTTGGC
323 CTTGCGCA-T-CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGC
** * * *** *
16445386 TTAGGCATAC-GAGTTC-TT-CCAG-CTAAGTTAGATCGTTCC--ACTGCGGCAAG-GGTTGC--
386 TTAGGCATACGGAGTTCATTCCCAGTCT-A---AGATCGGACCGGACCGAGGGTTGTGGTAGCAG
* ** * * *
16445442 -AT-AGCATGCACAAAGA-GGGGA-CCGACCGA-ACCCAGCTT-CGCAT-CC-CCCCTCTGGCCG
447 GATCGGCA-GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * * ***
16445499 GCTGAACGCCCG-ACGCTCGTTTCGTGGGTTGACTTAGGCA-AAGCA-TTGAATGGGAGT-TAAG
511 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
16445560 TC-TA-AGATCGGA-CCAGACCGAGGGTTGCGGCAGCACATGCTCGGCTCGGGCATGTGCTGGTG
576 -CATACGGA--GTATCCAGACCCAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * ** * *
16445622 CTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTGTCGGAGAACCTGACAGGCGGCATTG
638 CCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCA-TCACGGAGAACCTGACCGACGGCATTG
* * *
16445687 GGGTTCTGGCGATCGAGGGGGCCGGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTT
702 GGGTTCCGGCGATC-AGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
** *
16445752 GGCCCTTATATTGTTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATT
766 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
16445817 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
831 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
16445860 AAATGGGGACACTTTTTTTAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
1 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTT
*
16445925 TTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
65 TTTGTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* * * * *
16445990 AAAAAATTCTAAAAAATCCCGAACCGCAAAAAGTTT-TGAAAATCTTGAAAAATAGAAAACGAGT
129 AAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAG-AAATCATGAAAAATAGAAAACGAGT
* * *
16446054 CGTCTTGCTATGAAACTTCACGCGAAGGCTTAGAGGACCATTGTATGAATTTACAAGCCATAAAA
193 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAA
*
16446119 ATGGCATTGGCATGCAGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
258 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* *
16446184 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCTTCCATCCGCCCGCTCGTTTCGTCGGTTG
323 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC--GC--CCGCTCGCTCGTTTCGTCGGTTG
* * * * * * *
16446249 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGA-CTACGGTTATGATAGCAGGA
384 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGA
* * * *
16446313 T-GCGCAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCTGGC
449 TCG-GCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
** * *
16446377 TGAGCGCCTACACGCTCGTTCCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCA
513 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
*
16446442 TACGGAGTTCATCCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTC
578 TACGGAG----T----A-TC------CAGA-C---CC-AGGGTTGCGGCAGCACATGCTGGGCTC
* * *
16446507 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCGGAGAACC
623 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-ACGGAGAACC
* * * * *
16446572 -AACCGGCGGACATTGGGGATTCCCGGTGATC-GCGGGGCC--AGGGGTGTGC-CACCATGAGGT
687 TGACCGACGG-CATTGGGG-TT-CCGGCGATCAG-GGGGCCGGGGGGGTGTGCGCA-CATGATGT
* *
16446632 GAGATGGGTGCTGGTACTTGGCCCCTTATATTGGCCCCCTTATCCCTCATCAAACCCTTGAAGAA
747 GCGATGGGTGCTGGTACTTGG-CCCTTATATTGGCCCCC-TATCCCTCATCAAA-CCTCG-AGAA
*
16446697 CTCACACCCCCTTAAAGAGCA-TTGAGATTCTTAACAGGTCCCTGCTGCCAGTAGCCCATTAAAA
808 CTCACACCCCCTTAAAGAGCATTTGAGATT-TT-ACAGGT--TTGCTGCCAGTAG-CCATT-AAA
16446761 GTGTCTG
867 GTGTCTG
* * *
16446768 AAATAGGGGACACTTTTTTCAAATGGTCAGAAAATCTTATACACTTCGTGTTTTTAGCTGAATTT
1 AAAT-GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
16446833 TTTGTGCATGCCAACAAAAATACAAGGATCAACGTCTACCATGTTTGGGGCCCAAAACTCATTGC
65 TTTGTGCATGCCAAAAAAAATACAAGGATC-ACGTCTACCAAGTTTGGGG-CCAAAACTCCTTTC
* * *
16446898 GAAAAAATTTTAAAAAATCCCAAACCGCAAAAGGTTTCAAAAATCATGAAAAAATAG-AAACGAG
128 GAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAGAAATCATG-AAAAATAGAAAACGAG
* *
16446962 TCGTCTTGCC-TGAAACTTCAC-AGAAGGCTTAAAGGACCATTGTATAAATTTACAAGCCATAAA
192 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAA
*
16447025 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACG
257 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
16447090 GCTTGCGAATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
322 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCT
* * * * * *
16447155 TAGGCATACAGAGTTCATTCCTAGTCTGAGATCAGACCGGACTGAGGGTTGTGGTAGTAGGATCG
387 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATCG
* * * *
16447220 ACAGCACGCAGAGGGGGACCCGATCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCTGGCTGAG
452 GCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
*
16447285 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACG
517 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
** * *
16447350 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGTGTTGCGGCAGCACATATTGGGCTTGGGA
582 GAG-T-A-T--C---C--AGA-C---CC--A--G-G-GTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
16447415 ATGTGCTGGTGCCACATTTTTCTTCGTGGGGGCACCAT--------CA-C-CGGAGAACCTAACC
627 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACGGAGAACCTGACC
* * * *
16447470 GACGGCATTGGGGTTCCGTCGGTCGAGGGGGCCGGGGGGGTCTGCGCACATGATTTGCGATGGGT
692 GACGGCATTGGGGTTCCGGCGATC-AGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * * *
16447535 ACTGGTACTTGACCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCATT
756 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
16447600 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
821 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
16447653 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTT
1 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTT
* * * * ** * *
16447718 TTTGTGCATGCCAATAAAAGTACGAGGATCATGTCTGTCAAGTTTGGGGCTAAAAAT-CTTTCTG
65 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-G
* * *
16447782 AAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGCC
129 AAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAGAAATCATGAAAAATAGAAAACGAGTC
* * *
16447847 GTCTTGACATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
194 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
16447912 TGGCATTGGCATGCAGAAATATGAAAATGTGCCTAAACCCACTTTCCACCCTATCAATCCACGGC
259 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
16447977 TTGCGCGTCCCGTCTCTCTGGCCTGCGTAGTGCCCGCTCGCCTGTCCGCCCACTCGTTTCATCGG
324 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-C--T-CG----CTCGTTTCGTCGG
* * * *
16448042 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGTGGTAGCA
381 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCA
* * * * * * *
16448107 AGATCGGTAACACGCAAAGGGGGACCACG-TCAATCCCCGGCTTGCGCATCCTGGCCCTCTGGCC
446 GGATCGGCAGCACGCAGAGGGGGACC-CGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * ** * *
16448171 GACGGAGTGCCCGCAAGCTTATTTTGTGGGTTGACTTAGGCATACGGAGATCATTCCCAGTCTAA
510 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
16448236 GCATACGGAGTTCATTCCCA-ATCTAAACATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGC
575 GCATACGGAG-T-A-T-CCAGA-C----C---CAG-G----------G--T----T--G--CGG-
* * * * * *
16448300 CCAAGGGTTACCGCAGCATATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTATCTTGGCCAGG
606 -C-A--G----CAC-----ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * ** **
16448365 GCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATTGGAGGG
658 GCACCATCGCCGGAGCATC-ACGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCAG-GGG
*
16448430 GCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
721 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * *
16448495 ATCCCTCATCAAACCTTGA-AACTCACACCCCATGAAAAAGCATATTGAGATTTTTACAGGTTTG
786 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT-TTGAGA-TTTTACAGGTTTG
* * *
16448559 CT-ACAGTAGCCATTAATGTGTTTG
849 CTGCCAGTAGCCATTAAAGTGTCTG
* *
16448583 AAAT-GAGACACTTTATATCAAAATAGG-CAC--AATC-T-TACA-TTCGAG--TTTAGCTGAAT
1 AAATGGGGACACTTT-TTTC-AAAT-GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-
* * * *
16448639 TTTTTTATGC-TG-CAAAAAAAATACAAGGATCAGGTCTACCAATTTTTGGGGCCAAAACTACTT
62 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTT
* *
16448702 TCGGAAAAAATTTGAAGAAAAATCCCGAAACCGTTAAAAAGTATTC--AAATCATGAAAAATAAA
126 TC-GAAAAAATTT-TA-AAAAATCCC-AAACCG-TAAAAAGT-TTCAGAAATCATGAAAAATAGA
16448765 AAACGAGTCGTCTTG-CATGAAACTTCACGTGAAGGCTT-AAGGA-CATTGTATGGAATTTACAA
185 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTAT-GAATTTACAA
* *
16448827 GCCATAAAAAGTGGCATTGGCACGCAGAACAATATGAAGA--TGCCTAAACCCACCTATCA-CCT
249 GCCATAAAAA-TGGCATTGGCATGCAG-A-AATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * *
16448889 ATCGGATCCACAGCTTG-GCGATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCAC-CGCTTGTT
311 ATC-GATCCACGGCTTGCGC-ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCTCGTT
* ** *
16448952 TCGTCGCGTT-GCTTTGGTGTACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTG
374 TCGTCG-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * * * **
16449016 CGGCAGCAGGATCGACAGGACGCAGAGGGAGACCCGATCGATCCTTGGCTTGCGCATCCCGCCCC
438 TGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCC
* * *
16449081 TCTGGCCGGCTGAGCGCACGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCT
503 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
** * *
16449146 AGTCTAAGCATACGGAGTTCATTCCCGTTTTAAGATTGGACCGGACCGAGCATTACGACAGCACA
568 AGTCTAAGCATACGGAG-T-A-T-CC--------A---GA-C---CC-AGGGTTGCGGCAGCACA
* * * * * *
16449211 TGCTGGGCTCGGGCATGTGCTAGTGTCGCATTTTTCTTCGCCAGGGCACCATTGTCGGAGCATCG
613 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-
* * * * *
16449276 TC-GAGAACCTGACCGGCGGCATTGGGGTT-CGACGATCGGGGGGCC-GGGGGGTGTTCGCACAT
677 ACGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCAGGGGGCCGGGGGGGTGTGCGCACAT
* *
16449338 GATGTGCGATGGGTGCTGGTACTGGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
742 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
16449403 ACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
807 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
16449468 TG
872 TG
* * * *
16449470 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTCTTCGTTGAATTGT
1 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-T
* * *
16449535 TTTGTGCATACCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
65 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
* * * *
16449600 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT-TGAAAATCGTGAAAAATAGAAAATGAGTC
130 AAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAG-AAATCATGAAAAATAGAAAACGAGTC
* ** *
16449664 ATCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATCAAAA
194 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAA
16449729 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
259 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
16449794 TTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCTCG-T--TTT-GTCGGTTGGCTTA
324 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTA
* * * * ** ** * * *
16449855 GGCATACGAAGTTCATTCCCAGTTTAAGATCGGACTGGACTGAAAGTTACGATCGCAGGATCGGT
389 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATCGGC
* * * * * * *
16449920 AGCACGTAGAGGGGGACTCGACCGATCCCCAGCTT--G-ATCCCGCCCCTCTGGCCGACTAAGCT
454 AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
16449982 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA-TAT-C-G-
519 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * * * *
16450043 G-A-CCAGACCAAGGGTTGCGACAACACATGCTGGTCTCGAGCATTTGCTGGTGTCTCATTTTTC
584 GTATCCAGACCCAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * * * * * *
16450106 CTCGTCGGGTCACCATCGTCGGAGTATCATCGGAAAACGTGACCGACGGCATTGGCGTTCCGACG
649 TTCGTCGGGGCACCATCGCCGGAGCATCA-CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCG
* * * *
16450171 ATCGGGGGGTCGGGAGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATAT
713 ATCAGGGGGCCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
16450236 TGGCCCCCTATGCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTAC
777 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
16450301 AGGTTTGCTGTCAGTAGCCATTAAAGTGTCTG
842 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
** *
16450333 AAATGGGGACACTTTTTTCAAATTTTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
1 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * *
16450398 TCTATGCATGCGAAAAAAAATACAAGGATCACATCCACCAAGTTTGGGGCCAAAAATCCTTTTGA
66 T-TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
* * * * * *
16450463 AAAAATTTTAAAAAATCTCGAACCGTAAAAATTTTCAAAAATCATGAAAAATCGAAAACGAGTCA
130 AAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAGAAATCATGAAAAATAGAAAACGAGTCG
* * *
16450528 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTGCAAGCCATAAAAAT
195 TCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
16450593 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCA
260 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
16450658 TGCGCATCCCGTCTCTCTGGCCAGCATAGTGCCCCCCGCCGCCGC-CACGTCATTTCGTCGGTTG
325 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTG---CCCG-C-CCGCTCGC-TCGTTTCGTCGGTTG
* * *
16450722 GCTTAGGGCATAACGGAGTTCATTCCCAGTATAAGATCGGACCGGGCCGAGGGGTTGTGGCAGCA
384 GCTTA-GGCAT-ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA-GGGTTGTGGTAGCA
* * * * * * *
16450787 GGATTGACACCACGGCAGAGGGGGACCCGGTCGATCCTCCGGCTTTGCGTATCCTG-GCCTCTGG
446 GGATCGGCAGCAC-GCAGAGGGGGACCCGATCGATCC-CCGGC-TTGCGCATCCCGCCCCTCTGG
* * * * * *
16450851 CCCGGTTGGAGCGCCCGGCACGCTCGTTTCGTGGGTTGACTTAGGTAAAACGAAATTCATTCCTA
508 -CCGGCT-GAGCGCCC-GCACGCTCGTTTCGTGGGTTGACTTAGG-CATACGGAGTTCATTCCCA
*
16450916 GTCTAAGCAATACGGAAGTTTATTCTCACTCTAAGAATCAAGATCCGACCACAGGGTTTACGGAC
569 GTCTAAGC-ATACGG-AG-------T-A-TC-------C---A---GACC-CAGGG-TTGCGG-C
* * *
16450981 AGCACATGCCTGGGACTCGGGTATGTGCTGGTGCCTGTA-TTTTCTTCGTCGGGGCAACACATCA
607 AGCACATG-CTGGG-CTCGGGCATGTGCTGGTGCC-GCATTTTTCTTCGTCGGGGC-AC-CATCG
* * * *
16451045 CC-AAGCATCGTACGGAGCAATGCGGACCGATCGGGCATTGGGGTTTCCGGCGATCGGGGGGCCG
667 CCGGAGCATC--ACGGAG-AA-CCTGACCGA-C-GGCATTGGGG-TTCCGGCGATCAGGGGGCCG
*
16451109 AGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTAGG
725 -GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA--
*
16451173 TCCCTCATCAAATCTCGAGAACTCACACCCCCGTTAAAAGAGCATTTGAGGATTTTACAGG-TTG
787 TCCCTCATCAAACCTCGAGAACTCACACCCCC-TT-AAAGAGCATTTGA-GATTTTACAGGTTTG
* * *
16451237 CTACCAAATAGCCATTAAAGTGTCTA
849 CTGCC-AGTAGCCATTAAAGTGTCTG
*
16451263 AAATGGGGACAC-TTTTTCAAATGGTC-CAAAATCTTGTACATTCTCGAG-TTTTAGGCTGAAAT
1 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTA-GCTG-AAT
* * * *
16451325 TTTTTGTGCATGCCCAACAAAAATAAAATGGATCACATCTACCAAAGTTGGGGGCC-AAACTCCT
63 TTTTTGTGCATG-CCAAAAAAAATACAA-GGATCACGTCTACC-AAGTTTGGGGCCAAAACTCCT
* *
16451389 TTCGAAAAAATTTTAAAAAA-CCCAAACCTGTCAAAAGTTT-TGAAAATCATGAAAAATA-AAAA
125 TTCGAAAAAATTTTAAAAAATCCCAAACC-GTAAAAAGTTTCAG-AAATCATGAAAAATAGAAAA
* * * *
16451451 CTGAGTCATCTTGGCCATAAAACTACACGTGAAGGCTT-AAGGACCATGTGTACTGGATGTTTTA
188 C-GAGTCGTCTT-GCCATGAAACTTCACGTGAAGGCTTAAAGGACCAT-TGTA-T-GA--ATTTA
* *
16451515 C-AGCCATAAAAATGGAATTGGGCATGCAGAAATATGAGGAGATGTGCCTAAACCTA-CTACCAC
246 CAAGCCATAAAAATGGCATT-GGCATGCAGAAATATGA--AGATGTGCCTAAACCCACCTACCAC
* * * * *
16451578 CCTATTCGATCCACGGCTTGCGGCATCTCGTCTCACTAGTC-GCATAAGTGCCTGCCCGCACCGC
308 CCTA-TCGATCCACGGCTTGC-GCATCCCGTCTCTCTGGCCGGCGT-A--G--TGCCCGC-CCGC
* *
16451642 -CGCCCACTTGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCTGCCAGTCTAAGAAT-GCG
365 TCG----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC--CCAGTCTAAG-ATCG-G
** ** * * * * * * *
16451705 ACCAAAATGAGGGTTGTAGCAGCAAGGATGCGACAGCATGGTAGAGGGGGACCCGGTTGATCCCC
422 ACCGGACCGAGGGTTGTGGTAGC-AGGAT-CGGCAGCA-CGCAGAGGGGGACCCGATCGAT-CCC
** * * * *
16451770 CGGCTTTGCGCATCCTTTCCCTTCTGGCCTAGCTGAGCGCTCTGTACGCT-GTTTTCGTGGGTTC
483 CGGC-TTGCGCATCC-CGCCCCTCTGGCC-GGCTGAGCGC-CCGCACGCTCG-TTTCGTGGG-T-
* *
16451834 TAACTTA-GCATATGGAGTTCATTCCCAGTCTAAGCA
541 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
16451870 ATGACGAATT
Statistics
Matches: 7267, Mismatches: 837, Indels: 889
0.81 0.09 0.10
Matches are distributed among these distances:
819 26 0.00
820 54 0.01
821 2 0.00
824 2 0.00
825 2 0.00
826 1 0.00
828 1 0.00
829 3 0.00
831 1 0.00
833 1 0.00
834 1 0.00
837 2 0.00
838 3 0.00
839 6 0.00
840 9 0.00
841 159 0.02
842 77 0.01
843 32 0.00
844 4 0.00
845 54 0.01
846 15 0.00
847 14 0.00
848 7 0.00
849 18 0.00
850 15 0.00
851 8 0.00
852 76 0.01
853 48 0.01
854 59 0.01
855 68 0.01
856 29 0.00
857 13 0.00
858 28 0.00
859 104 0.01
860 76 0.01
861 55 0.01
862 383 0.05
863 703 0.10
864 31 0.00
865 82 0.01
866 99 0.01
867 40 0.01
868 50 0.01
869 93 0.01
870 62 0.01
871 145 0.02
872 176 0.02
873 189 0.03
874 41 0.01
875 20 0.00
876 40 0.01
877 32 0.00
878 6 0.00
879 12 0.00
880 15 0.00
881 12 0.00
882 18 0.00
883 96 0.01
884 101 0.01
885 261 0.04
886 37 0.01
887 127 0.02
888 180 0.02
889 71 0.01
890 92 0.01
891 196 0.03
892 58 0.01
893 260 0.04
894 62 0.01
895 36 0.00
896 5 0.00
897 3 0.00
898 5 0.00
899 55 0.01
900 113 0.02
901 25 0.00
902 21 0.00
903 89 0.01
904 203 0.03
905 7 0.00
906 12 0.00
907 160 0.02
908 60 0.01
909 122 0.02
910 9 0.00
911 1 0.00
913 1 0.00
914 6 0.00
915 4 0.00
916 6 0.00
917 192 0.03
918 7 0.00
919 72 0.01
920 8 0.00
921 11 0.00
922 27 0.00
923 21 0.00
924 43 0.01
925 51 0.01
926 179 0.02
927 73 0.01
928 42 0.01
929 88 0.01
930 215 0.03
931 101 0.01
932 40 0.01
933 1 0.00
934 2 0.00
935 17 0.00
936 19 0.00
937 11 0.00
938 35 0.00
939 22 0.00
940 17 0.00
941 6 0.00
942 39 0.01
943 16 0.00
944 42 0.01
945 47 0.01
946 11 0.00
947 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (873 bp):
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
AAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAGAAATCATGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATCGGCAG
CACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
ATCCAGACCCAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
CGTCGGGGCACCATCGCCGGAGCATCACGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC
AGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTG
Found at i:16444724 original size:26 final size:26
Alignment explanation
Indices: 16444694--16444746 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16444684 GTTGACTTAG
*
16444694 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16444720 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16444746 G
1 G
16444747 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16446442 original size:26 final size:26
Alignment explanation
Indices: 16446413--16446465 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16446403 GTTGACTTAG
* *
16446413 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16446439 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16446465 G
1 G
16446466 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16447353 original size:26 final size:26
Alignment explanation
Indices: 16447317--16447369 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16447307 GTTGACTTAG
*
16447317 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16447343 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16447369 G
1 G
16447370 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16448250 original size:26 final size:26
Alignment explanation
Indices: 16448210--16448288 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
16448200 GTTGACTTAG
*
16448210 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16448236 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
16448262 ACATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16448288 G
1 G
16448289 ATCAGACCGG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16454293 original size:26 final size:26
Alignment explanation
Indices: 16454263--16454315 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16454253 GTTGACTTAG
*
16454263 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACAGAGTTCATTCCCAGTATAA
*
16454289 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTATAA
16454315 G
1 G
16454316 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTATAA
Found at i:16455209 original size:26 final size:26
Alignment explanation
Indices: 16455173--16455222 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16455163 TTGACTTAGG
*
16455173 CATACGGAGTTCATTCCCAGTCTACC
1 CATACGAAGTTCATTCCCAGTCTACC
*
16455199 CATACGAAGTTCATTCCTAGTCTA
1 CATACGAAGTTCATTCCCAGTCTA
16455223 AGATCGGACC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.30
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTACC
Found at i:16456087 original size:26 final size:26
Alignment explanation
Indices: 16456058--16456110 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16456048 GTTGACTTAG
16456058 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16456084 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16456110 G
1 G
16456111 ATCGCATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16457957 original size:26 final size:26
Alignment explanation
Indices: 16457921--16457973 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16457911 GTTGACTTAG
*
16457921 GCATACGGAGTTCAATCCCAATCTAA
1 GCATACAGAGTTCAATCCCAATCTAA
* *
16457947 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAATCTAA
16457973 G
1 G
16457974 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAATCTAA
Found at i:16458851 original size:25 final size:25
Alignment explanation
Indices: 16458823--16458870 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
16458813 GTTGACTTAG
16458823 GCATACAG-AGTTCATTCCCAGTCAA
1 GCATAC-GTAGTTCATTCCCAGTCAA
*
16458848 GCATACGTAGTTCTTTCCCAGTC
1 GCATACGTAGTTCATTCCCAGTC
16458871 TAAGATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (25 bp):
GCATACGTAGTTCATTCCCAGTCAA
Done.