Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 105 of 190
Found at i:16459748 original size:26 final size:26
Alignment explanation
Indices: 16459719--16459777 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
16459709 GTTGACTTAG
16459719 GCATACAG-AGTTCATTCCCAGTCTAA
1 GCAT-CAGAAGTTCATTCCCAGTCTAA
*
16459745 GCATGAGAAGTTCATTCCCAGTCTAA
1 GCATCAGAAGTTCATTCCCAGTCTAA
16459771 G-ATCAGA
1 GCATCAGA
16459778 TTAGACCGAG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 7 0.23
26 23 0.77
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATCAGAAGTTCATTCCCAGTCTAA
Found at i:16461543 original size:26 final size:26
Alignment explanation
Indices: 16461513--16461565 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16461503 GTTGACTTAG
*
16461513 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16461539 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16461565 G
1 G
16461566 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16462805 original size:876 final size:872
Alignment explanation
Indices: 16457947--16464186 Score: 6963
Period size: 893 Copynumber: 7.0 Consensus size: 872
16457937 CCCAATCTAA
* ** *
16457947 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGG-CCGAGGGTTGCAGCAGCACATTCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GGACCGAGGGTTGCAGCAGCACATGCTGG
* ** ** * *
16458011 GCTCGGGAATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCATCGGAG
* ** * *
16458076 AACCTGACCGGCGGCATCGGGGTTCCGGTGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTA
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCCGGGGGG-GTGCGCACATGATGTG
* *
16458141 AGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
16458206 ACCCCCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
16458271 GGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTG
* * *
16458336 TGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCATCTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
16458400 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * * *
16458465 TCCATGAATCTTCACGTGAAGGCTTATGGGACCACTATATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
16458530 TTGGCATGCAAAAATATGAAGATGTACCTAAACCCAGCAACCACCCTATCGATCCACGGCTTGCG
584 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
16458595 CATCCCATCTCTCTGGCTGGCATAGTGCCCGCCCTCCCACCCGCCCGTTCGTTTCGTCGGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-GCC-CCCGCCCGCTCGTTTCGTCGGTTGGC
*
16458660 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCAGCAGCAGGATT
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG-ACTGAGGGTTGCAGCAGCAGGATC
* * * * *
16458725 GGCAGCACTCAGAAGGGGACCCGGTCGATCC-CTGGCTTTCACATCCCGCCCCTCTGGCCGGCTG
776 AGCAGCACT-AGAGGGGGACCCGGTCGATCCTC-GACTTACGCATCCCGCCCCTCTGGCCGGCTG
* * *
16458789 AGCACCCGCATGCTCGTTT-ACTAGGTTGACTTAG
839 AGCGCCCGCACGCTCGTTTCA-TGGGTTGACTTAG
** *
16458823 GCATACAGAGTTCATTCCCAGTCAAGCATACGTAGTTCTTTCCCAGTCTAAGATCACACCGTACC
1 GCATAC-G-G---------AGT------T-C--A-----TTCCCAGTCTAAGATCGGACCGGACC
** * * * * *
16458888 GAGGGTTGTGGCAGCACATGCTGGGCTTGGGCATGTGTTGGGGCCACATTTTTCTTCACC-GGGA
41 GAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGC
* * *
16458952 ACCATCGCCGGAGGATCATCGGAGAACCTGACCGGCGGCATTGGGG-TCCGACGATCGGAGGCGT
106 ACCATCGCCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGC
* * * * * *
16459016 CGGGGGGGTGTGAGCACATGATGTGAGATGAGTGCTAGTTCTTGGCCCTTATATTGGCCCCCTAT
170 CCGGGGGG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
16459081 CCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGT
234 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
16459146 CAGTAGCCATTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACT
299 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
16459211 TCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTA
364 TCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * *
16459276 TGGGGCCAAAACTCCCTCCGAAAAAAATTTAAAAAATCTCGAA-CGCATAAAGTTTTGAAAATCG
429 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCG
*
16459340 TGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
494 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
16459405 GAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACACACCTA
559 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTA
*
16459470 CCACCCTACCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTC-CCCG--CC
624 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC-CGCCCGCCCC
* * * *
16459532 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGGTCATTCCCAGTTTAAGATTGGATCGA
688 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG-
* * * ** *** **
16459597 ATTGAGGGTTACAGTAGCAGGATTGGCAGCACGTAGAGGGGGACCCAACCGATCCTC-AGCTTGT
752 ACTGAGGGTTGCAGCAGCAGGATCAGCAGCAC-TAGAGGGGGACCCGGTCGATCCTCGA-CTTAC
* * * * * *
16459661 GCAACCTGCCCCTCTGGCCGGCTCAGTGCCCGCATGCTCGTTTCGTGGGTTGACTTAG
815 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* *
16459719 GCATACAGAGTTCATTCCCAGTCTAAGCATGAGAAGTTCATTCCCAGTCTAAGATCAGATTAGAC
1 GCATACGGAGTTCATTCCCAG--T---C-T---AAG---A-T--C-G-----GA-CCG----GAC
* ** ** *
16459784 CGAGGGTTCCAGCAGCACATGCTGGGCTCGAACATGTGCTGGTGCCGTATTTTTCTTCGCCGAGG
40 CGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGG
* * * * * *
16459849 CACCATCGCTGGAGCATCACCGGAGAACCTGATCGACGGCATTGGGGTTCCGATGATCGGGGGGG
105 CACCATCGCCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGC
* *
16459914 CCGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCTTA
170 CCGGGGGGGTG--CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
16459979 TCCCTCATCAAACCTCGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACCGGTTTACTG
233 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
16460044 CCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATTGTAACAAAATCTTGTACAC
298 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
16460109 TTCGAGTTTTTAGCTGAATTTTTTTCTGCATGGCAACAAAAATACAAGGATCACG--T-CCAAGT
363 TTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * *
16460171 TTGGGCCCAAAACTTCTTCTGAAAAAATTTTAAAAAATCCCGAAACGCAAAAAGTTTTGAAAATT
428 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATC
* *
16460236 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCTCGTGAAGGCTTGAGGGACCATTGTA
493 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * * *
16460301 TGAATTTAGAAGCCATAAAAATGGCATTGACACGTAAAAATATGAAGATGTGCCTAAACCCAGCT
558 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCT
* * *
16460366 ACCAACCTATCGATCCACGGCTTGCGCATCCTGTCTCTTTGGCCGGCGTAGT----GCCCG--CC
623 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCC
*
16460425 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGG
688 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCG
* * ** *
16460490 ACCGAGGGTTGTAGCAGC---A-C--CA-CAGGAG-GGGGGACCGACTGG--GAATCCTCGGCTT
752 ACTGAGGGTTGCAGCAGCAGGATCAGCAGCACTAGAGGGGGACC--C-GGTCG-ATCCTCGACTT
** * ** *
16460545 GTGCATCTCGCCCCTCTGGTAGGCTGCGCAGCCCGCACGCTCGTTTCATGGGTTGACTTAG
813 ACGCATCCCGCCCCTCTGGCCGGCTGAGC-GCCCGCACGCTCGTTTCATGGGTTGACTTAG
*
16460606 GCATACGGAG-TCATTCCCAGTCTAAACATACGAAGTTCCATTCCCAGTCTAAGATGGACCCAAA
1 GCATACGGAGTTCATTCCCAGTCT-AAGAT-CG--G----A----C---C------GG------A
* * * * * *
16460670 CCGAGGGTTTGCCGGTAGC-CATGCTGGGGCTCTGGCATGTGCTGGTG-AAGCATTCTTCTTCAC
39 CCGAGGG-TTG-CAGCAGCACATGCT-GGGCTCGGGCATGTGCTGGTGCCA-CATTTTTCTTCGC
** * * * **
16460733 CGGGGTGCCAT-GCCGGAGCATCA-CTGGAG-ACCTAACCGGCAGCATTGGGGTTTCGGTGATCG
100 CGGGGCACCATCGCCGGAGCATCATC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-
* * **
16460795 GGGGGGGCCGGGGGGGTGGTAGCACATGATGTTTGATGGGTTGCTGGTACTTTGGCCCTTATATT
163 GGGGGGCCCGGGGGGGT-G-CGCACATGATGTGCGATGGG-TGCTGGTAC-TTGGCCCTTATA--
* * * *
16460860 TTGCCCCCCTATCCCTCATCCAACCTCAAGAACCCACACCTCCTTAAAGAGCATTTGAGATTTTA
222 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * *
16460925 TAGGGTTTGCTG-CAATAGCCAAATAAAGT-CCTGAAATGGGGACACTTTTTTCAAATGGTCACA
287 CA-GGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
16460988 AAATCTTGTACACTTCGATTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAATGATC
350 AAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * *
16461053 ATGTCTACCAAGTTTGGGGCCAAAACTCCTT-CTAAAAGAATTTTAAAAAATCTCGAACCG-AAA
415 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AATTTTAAAAAATCCCGAACCGCAAA
**
16461116 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
479 AAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * * **
16461181 AA-GGACCACTATATGAATTTAGAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGT
544 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGT
* * * * **
16461245 ACCTAAATCCACCTACCACCCTATCGATCCACCGCTTGCGCATCCCATCTCTCTGGCCGATGTAG
609 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * * *
16461310 TGCCCGCCTGCCCGTCCGCCCGCTGGTTTCATCGGTTGGCTTAGCCATACGGAGTTCATTCCCAG
674 TGCCCGCCCGCCC--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * ** * ** *
16461375 TCTAAGATCGAACCGGACCGAGGGTTGGGGCAGCAGGATC-GATAGCA-TGCAGAAAGGGATCCG
737 TCTAAGATCGGACC-GACTGAGGGTTGCAGCAGCAGGATCAG-CAGCACT--AGAGGGGGACCCG
* * * *
16461438 ATCGATCCCCGACTTATGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGG
798 GTCGATCCTCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGG
16461503 GTTGACTTAGGCATACGG
863 GTTGAC-T-----TA--G
16461521 AGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
1 -G--CA-T---A--C---G-----G-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
* * * * *
16461586 AC-GACAGCACATGCTGGGCTCGGACATGTGCTGGTGCAACATTTTTCTTTGCCAGGGCACCATC
48 GCAG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATC
* * * * ** * *
16461650 GTCGGAGCATCGTCGGAGAACTTGACCGGAGGCATTACGGTTTCGACGATCGGGGAGGCCGGGGG
112 GCCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG-GGCCCGGGG
*
16461715 GGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
176 GG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
16461780 TCAAACCTCAAGGACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAG
240 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
16461845 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGT
305 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * **
16461910 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAATGATCACATCTACCAAGTTTGGAAC
370 TTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * *
16461975 CAAAAATACTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCGTGAAAA
435 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAA
* *
16462040 ATAGACAACGAGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTT
500 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
16462105 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
565 ACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
16462170 TATTGTTCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCATCCGCCC
630 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC--CCGCCC
* * * **
16462235 GCTCGTTTCGTTGGTTGGCCTAGGCATACGGAGTTCATTCCCAGTCCAAGATCAAACCAGACTGA
693 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACTGA
* * *
16462300 GGGTTGCGGCAGCAGGATCAGTAGGACATAGAGGGGGACCCGGTCGATCCTCGACTTACGCATCC
757 GGGTTGCAGCAGCAGGATCAGCAGCAC-TAGAGGGGGACCCGGTCGATCCTCGACTTACGCATCC
* *
16462365 CGCCCCTCTGGCTGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
821 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * *
16462417 GGATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
* ** * * ** * * *
16462482 CTCGGGCATTTTTTGGTGCCACATTTTTCTTTGTCGGGGCACCATTACCAGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCATCGGAGA
* * * * * *
16462547 TCCTGATCGGTGGCATTAGGGTTCCGGCGATCGGTGGGCCCGGGGGGGTGCGCACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGGTGCGCACATGATGTGCG
* ***
16462612 ATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCATTG
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
*
16462677 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
16462742 GGATACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCTAGTTTTTAGCTGAATGTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTG
* *
16462807 CATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* *
16462872 TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGC
456 TTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
16462937 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * **
16463002 GGAACAT--AGAGATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACGTTTTGCG
586 GG--CATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
16463065 CATCCCGTCTCTC-GGCCGACGTAGT----G-CC-CTCCCGCCCGCTCGTTTCATCGGTTAGCTT
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
16463123 AGGCATACAGAGTTCTTTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCAGCAGTAGGAT-AG
714 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGACTGAGGGTTGCAGCAGCAGGATCA-
** * *
16463187 GCAGCACTAGAGGGGGACCCGACCGATCC-CCAGCTTACGTATCCCGCCCCTCTGGCCGGCTGAG
777 GCAGCACTAGAGGGGGACCCGGTCGATCCTCGA-CTTACGCATCCCGCCCCTCTGGCCGGCTGAG
* *
16463251 CGCCCGCATGCTCGTTTCGTGGGTTGACTTAG
841 CGCCCGCACGCTCGTTTCATGGGTTGACTTAG
*
16463283 GCATACGGAGTTGATTACCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGAACCGGAC
1 GCATAC---G--G------AG--T-----T-C--A-TTC---CC-AGTCTAAGATCGGACCGGAC
* * * * *
16463348 CGATGGTTGTAGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAGATTTTTCTTCGTCGGGG
40 CGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGG
* * * * * *
16463413 CACCATCGTCGGAGCATCGTCGAAAAACTTGATCGGCGGCATTGGGGTTCCGACGATCTGGGGGG
105 CACCATCGCCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG
* * *
16463478 CCAGAGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTA
169 CCCG-GGGGGGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
16463542 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG-TG
233 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-
* * * * *
16463606 GCCAGTAGGCGTTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTAGA
297 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
16463671 CTTCGAGTTTTTAGCTGAA-GTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
362 CTTCGAGTTTTTAGCTGAATG-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * * **
16463735 GTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATGCCAAACCGCAAAAAGTTTCAAAAA
426 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAA
* * *
16463800 TCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCATGTTAAGGCTTAAGGGACCATTG
491 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
16463865 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATATAAAGATGTGCCTAAACCCAC
556 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCAC
** * * *
16463930 CTACCACTTTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGT-CCTCGCCTAG
621 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC-CGCC-CG
* * * * *
16463994 ---CCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGA
684 CCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
** ** * * * * * * *
16464056 CCGAACTGAGGGTTGTGGTGGTAGGATCGGTAGCACACAGAGGGGGACCC-GACTGATCCCCGGC
749 CCG-ACTGAGGGTTGCAGCAGCAGGATCAGCAGCAC-TAGAGGGGGACCCGGTC-GATCCTCGAC
* * * *
16464120 TTGCGCATCTCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
811 TTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
16464182 GCATA
1 GCATA
16464187 TCTTAATTTG
Statistics
Matches: 4599, Mismatches: 539, Indels: 429
0.83 0.10 0.08
Matches are distributed among these distances:
865 2 0.00
866 84 0.02
867 80 0.02
868 1 0.00
869 6 0.00
870 2 0.00
871 9 0.00
872 1 0.00
873 3 0.00
874 1 0.00
875 13 0.00
876 456 0.10
877 13 0.00
878 141 0.03
879 3 0.00
880 4 0.00
881 2 0.00
883 1 0.00
884 12 0.00
885 8 0.00
886 44 0.01
887 80 0.02
888 60 0.01
889 52 0.01
890 12 0.00
891 4 0.00
892 281 0.06
893 609 0.13
894 133 0.03
895 43 0.01
896 211 0.05
897 251 0.05
898 139 0.03
899 320 0.07
900 491 0.11
901 195 0.04
902 207 0.05
903 73 0.02
904 299 0.07
905 52 0.01
906 45 0.01
907 72 0.02
908 38 0.01
909 3 0.00
910 5 0.00
913 4 0.00
915 1 0.00
916 1 0.00
918 2 0.00
919 2 0.00
922 2 0.00
924 1 0.00
926 1 0.00
927 1 0.00
930 1 0.00
932 3 0.00
933 6 0.00
934 13 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (872 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCATCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGACTGAGGGTTGCAGCAGCAGGATCAGCAG
CACTAGAGGGGGACCCGGTCGATCCTCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGACTTAG
Found at i:16463312 original size:26 final size:26
Alignment explanation
Indices: 16463283--16463335 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16463273 GTTGACTTAG
*
16463283 GCATACGGAGTTGATTACC-AGTCTAA
1 GCATACGGAGTTCATT-CCTAGTCTAA
16463309 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16463335 G
1 G
16463336 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16466511 original size:26 final size:26
Alignment explanation
Indices: 16466475--16466528 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
16466465 TGGGTTGACA
*
16466475 TAGGCATACGGAGTTTATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
16466501 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
16466527 TA
1 TA
16466529 AGATTGAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:16468326 original size:26 final size:26
Alignment explanation
Indices: 16468290--16468342 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16468280 GTTAACTTAG
*
16468290 GCATACAGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16468316 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16468342 G
1 G
16468343 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16468770 original size:903 final size:898
Alignment explanation
Indices: 16464722--16471760 Score: 8772
Period size: 897 Copynumber: 7.8 Consensus size: 898
16464712 AAATTGTCCT
* * * *
16464722 TTCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCGGACCAGACTGAGGGTTACGACA
1 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
* *
16464787 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCATCGGAG
66 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* * * * *
16464852 CATCGTCGGAGAACCTGACCGACGGCATTAGGGTTTCGACGATCGGGGGGTCGGGAGGGTGTGCG
131 CATCGCCGGAGAACCTGACCGGCAGCATTAGGGTTCCGACGATCGGGGGGCCGGG-GGGTGTGCG
16464917 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
195 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
16464982 CGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAA
260 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAA
* * *
16465047 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTAGGT
325 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
16465112 GAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
390 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * *
16465177 CTTTCGAAAAAATTTTAAAAAATGCC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
455 CTTCCGAAAAAATTTTAAAAAAT-CCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
16465241 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
519 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*** * *
16465306 ATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAATCCCACCTACCACCCTATTGAT
584 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
** * * * * * *
16465371 CCACAACTTGCGCATCCCATCTCTCTGGCCGGAGTAGTGCCTGCCCACCCC-CCCGATCGTTTGG
649 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCGCCCGCTCGTTTCG
* * ** * * ** *
16465435 TCAGTTGGCTTAGGCATACGAAGTTCATTTTCAGTCTAAGATCGGACCCGACCAAGGGTTGCCGT
714 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG-CGC
* * ** * * * *
16465500 AGCAGGATCGGCAGCACGCAAAGGAGGACCTAGCCGATTCTCGACTT--GC-T------CATCT-
778 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * *
16465555 --CGTCT----GCCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATACAGAGTTCA
843 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * * * * *
16465605 TTCCTAGTCTAAGCATATGGATTTCATTCCCAGACTAAAATTGGACCGGACCGAGGGTTGCGGTA
1 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
* ** * * * *
16465670 GCACATACTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGAGTATCA-C-T-GGAG
66 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* * * *
16465732 -A--ACC---TAACC-GA-CGGCA-C--TGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGTG
131 CATCGCCGGAGAACCTGACCGGCAGCATTAGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCG
* *
16465786 CACATGATGTGCGATGGGCGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
195 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
16465851 CGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCTGTAGCCATTAAA
260 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAA
* *
16465916 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCT
325 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * *
16465981 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGCCTACCAAGTTTAGGGCCAAAAATC
390 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * *
16466046 CTTCCCAAAAAATTTAAAAAAATACC-GAACCGCAAAAAGTTTC-GAAATCATGAAAAATAGAAA
455 CTTCCGAAAAAATTTTAAAAAAT-CCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
*
16466109 ACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
519 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
** **
16466174 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGCACCTAAACCCACCTATAACCCTATCGAT
584 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * *
16466239 CCACGGCTTGTGCAT--CGATCTCTCTGGTCGGCGTAGTGCCCGCCCGCTCGCTCGCCCACTCCT
649 CCACGGCTTGCGCATCCCG-TCTCTCTGGCCGGCGTAGTGCCCGCCCGC-C-C-CGCCCGCTCGT
* * * *
16466302 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTT
710 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG
* * * * * * *
16466367 CGATAGTAGGATCGACAGTAAGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCT
775 CG-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCC
* * ** * *
16466432 TCTGGCTGGCTGAGCGCCCGCACGCTCATTTTTTGGGTTGACATAGGCATACGGAGTTTA
839 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * * *
16466492 TTCCCAGTCTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACTAGACTGAGGGTTGCAGCA
1 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
* * * *
16466557 GCACATGCTGGGCTCGGGTATGTGCTAGTGCCGCATTTTTCTTCGTCGAGGCACCATCACCGTGG
66 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT---C---G
* * * *
16466622 CATCGCCGTAGCATCCCCGGAGAACCTGACCAGCGGCATTAGGGTTCC-AGCGATCAGGGGGCCA
125 --TCG--G-AGCATCGCCGGAGAACCTGACCGGCAGCATTAGGGTTCCGA-CGATCGGGGGGCC-
16466686 AGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
183 -GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
16466751 CCTCATCAAGCCTTGAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACC
247 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACC
* *
16466816 AGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTT
312 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * *
16466881 CGAGTTTTTAGCTAAATTTTTTTATGCACGCCAACAAAATATACAAGGGTCATGTCTACCAAGTT
377 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTT
** ** *
16466946 TGGGGCCAAAA-TGCCTTCAAAAAAAATTTTAAAAAAT-CTCGAACCATAAATAGTTTCAAAAAT
441 TGGGGCCAAAACT-CCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAAT
*
16467009 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
504 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
**
16467074 ATGAATTTACAAGCCATAAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAC
569 ATGAATTTACAAGCCAT-AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
** * * *
16467139 CTACCACCCTATCGATCTTCGACTTGCGCATCCCGTCTCTCTGGCCGGTGTAGT----ACCCG-C
633 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * * * * *
16467199 CCGCCCGCTCATTTCGTCGGTAGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATCGGATCA
698 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * * *
16467264 -ATCCG-GGTGTTGCAGCAACAGGATTGGCAGCATGCAGAGGGGGACCTGGTCGATCCCCGGCTT
763 GA-CTGAGG-GTTGC-GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTT
* * * * * * * * *
16467327 GTGCATCCCGCCCCTCTGGCTGGCTAAGCGTCTGTACGCTCGTTTCATGGGTTGACTTAGACAGA
825 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
*
16467392 CGGAGTTCT
890 CGGAGTTCA
* * * * *
16467401 TTCTCAGTCTAAGCATACGGAGTTCTTTCCCAATGTAAGATCAGACCAGACCGAGGGTTGCGG-A
1 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
* * * *
16467465 GCACATGTTGGGCGCGGGCATGTGCTGGTACCACATTTTTCTTCGTCGGGGCACCAACGTCGGAG
66 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* *
16467530 CATCGCCGGAGAACCTGACAGGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
131 CATCGCCGGAGAACCTGACCGGCAGCATTAGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGC
* *
16467595 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCGAACC
194 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * * * *
16467660 ACGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGTTGCCAATAGCCATTAA
259 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAA
* *
16467725 AGTGTCTCAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
324 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * * *
16467790 TAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGACAAAACA
389 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * **
16467855 CCTT-CAAAAAAATTTTTAAAAAATCCTGTATCGCAAAAAGTTTTGAAAATCGTGAAAAATA-AC
454 CCTTCCGAAAAAA-TTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGA-
* *
16467918 GAACGAGTCGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
517 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
16467983 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCG
582 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
16468048 ATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCACCCGCTCGCCAGCCCGCTCA
647 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC-C-CC-GCCCGCTCG
* *
16468113 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTAAGGGTT
709 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
* * * * * * * **
16468178 GCAGCAGCAGGATCGGTAACACGTAGAGGGGGACCCGACCGATCCCAGGCTTACGCGTCCTACCC
774 GC-GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC
* *
16468243 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCA
838 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
16468304 TTCCCATTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCA
1 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
*
16468369 GCACATACTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAG
66 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* *
16468434 CATCGCCGGAGAACCTGACCGGCAGCATTGGGGTTCCGGCGATCTGGGGGGCCAGGGGGGTGTGC
131 CATCGCCGGAGAACCTGACCGGCAGCATTAGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGC
* * * * *
16468499 GCATAAGATGTGTGATGGGTGCTTGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
194 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
16468564 TTGAGAACTCACACCCCCTTATAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
259 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAA
* * * *
16468629 AGTGTTTGAAAAGGGG-CACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGC
324 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
16468693 TGAATTTTTTTATGCATGCCAACAAAAATA-AAGGATCATGTCTACCAAGTTTGGGGCCAAAACT
389 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* ** * ** *
16468757 CCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAA
454 CCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* * * * *
16468822 ATGTGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTAGAAGCC
519 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * * * *
16468887 ATAAAAATAGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACTCACCTACCATCCTATCAAT
584 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * *
16468952 CCATGGCTTGCGCATCCCGTCTCTCTTGCTGGCGTAGTGCCCGCTCG-CCCGCCCGCTCACTTGT
649 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCGCCCGCT--C--GT
* *
16469016 TTCGTTGGTCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TCGAGGGTT
710 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTT
* * ** * * *
16469080 GTGGCAGCAAGATCGGCAGCATACAGAGGGTGACCCGGCCGATCCCCGACTTGCACATCCCGCCC
774 G-CGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC
** * * * *
16469145 CTCTGGCTTGCTGAGCACCTGCACGCTCGTTTCCTAGGTTGACTTAGGCATACGGAGTTCA
838 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * **
16469206 TTCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAATAGTTGCGGCA
1 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
* * ** *
16469271 GCACATGCTGGGCTCGAGCATGTGTTGGTGCCATTTTTTTCTTCG-CTGGGGCACCATCGCCGGA
66 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGTCGGA
* ** *
16469335 GCATCGTCGGAGAACCTGACCGG-AGACATTAGGGTTTTGACGGTCGAGGGGGCCCGGTGGGGTG
130 GCATCGCCGGAGAACCTGACCGGCAG-CATTAGGGTTCCGACGATCG-GGGGG-CCGG-GGGGTG
*
16469399 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAA
191 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
16469464 GCCTCAAGAACTCAC-CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTATGCCA
256 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTA-GCCA
*
16469528 TTCAAAGTGGTCTGAAATGGGGACACTTTTTTCAAATGGACACAAAAATCTTGTACCACTTTCGA
320 TT-AAAGT-GTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTA-CAC-TTCGA
* * * *
16469593 GTTTTTAGGC-GAAATTTTTTGTGCATGCGAGA-ACAAAATACAAGGACCATG-CTACCAAGTTC
380 GTTTTTA-GCTGAATTTTTTTGTGCATGCCA-ACA-AAAATACAAGGATCACGTCTACCAAGTT-
* **
16469655 TGGGGCCAATAAACTCCTTCCGAAAAAATTTAAAAAAATCC-GAACTACAAAAAGTTTCAAAAAT
441 TGGGGCC-A-AAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAAT
* * **
16469719 CGTTAAAAAAATAGAAAACGAGTCGTCTTGCCAT-AAACTTCACGTGAAGGCTAAATGGGAAGAT
504 CG-T-GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGGACCAT
16469783 TGTATGAA-TTACAAGCCCATAAAAAAATGGCAATT-GCATG-AGAAAATAATGAAAGATGTTGC
566 TGTATGAATTTACAAG-CCAT--AAAAATGGC-ATTGGCATGCAG-AAAT-ATG-AAGATG-TGC
* * * * *
16469845 CTAAA-CCACCTACCACCCTATCGGTCCACGACTTGC-CTTGCCCATCTCTCTGGCCCGGATGT-
623 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CCCGTCTCTCTGG-CCGG-CGTA
* * *
16469907 GTGCCCGCTCG-CCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
685 GTGCCCGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
16469971 TAAGATCAGACCAGACTGAGGGTTGTGGCAGTAGGATTGGCAGCACGCAGAGGGGGACCCGGTCG
750 TAAGATCAGACCAGACTGAGGGTTG-CGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCG
** * * *
16470036 ATCCTTGGCTTGCGCATCCCGCCCCTCTGGCCTGCTGAGCACCCGCACGCTCTTTTCGTGGGTTG
814 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
*
16470101 ACTTAGGCATACGGAGTTCT
879 ACTTAGGCATACGGAGTTCA
* * * *** *
16470121 TTCCCAGTCTTAGCATA-GAGAGTTCATTCCCAATCTAAGATTGGAATGGTCCGAGGGTTGCGGC
1 TTCCCAGTCTAAGCATACG-GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGC
* * * * * * * *
16470185 AGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATTGAGGCACCATTGCCAGA
65 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGA
* * * * * *
16470250 GCATCGTCGGAGAACCTGACCGACGGCATTTGGGTTCCG-CAGATCGGGGGGGCTGGGGG-GTGC
130 GCATCGCCGGAGAACCTGACCGGCAGCATTAGGGTTCCGAC-GATCGGGGGGCCGGGGGGTGTGC
* * *
16470313 GCACTTGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACC
194 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
16470378 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
259 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAA
*
16470443 AGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
324 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * ***
16470508 TCAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTCTTGCCAAAACT
389 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * *
16470573 CCTTTCGAAAAAATTTTAAAAAAT-CTCAAACTGCAAAAAGTTTTAAAAATCGTGAAAAATAGAA
454 CCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* *
16470637 AACCAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGGATGAATTTACAAGC
518 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * * * *
16470702 CATAAAAATAGCATTGAC-TCACAGAAATATGAAAATGTGCCTAAACCCACGTACCACCCTATCG
583 CATAAAAATGGCATTGGCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * *
16470766 ATCCACAGCTTGCGCATCCAGTCTCTCTTGCCGGCGTAGTGCCCGCCCG-CCCGCTCGCTCGTTT
647 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCGCCCGCTCGTTT
* * * * * *
16470830 CATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGAGTTACG
712 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCG
* * * * * ***
16470895 AAAGCAGGATCGGTAGCACGTAGAGGGGAACCCGGTCGATCTGGGGCTTGCGCATCCCGCCCCTC
777 -CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * * * *
16470960 TGGCCGACTGAGTGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTAA
841 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * ** * *
16471018 TTCCTAGTCTAAGTATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCAGCA
1 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
* * * *
16471083 GCAAATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCATCGGGGCACCATCG-CTAGA
66 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTC-GGA
* * * ** * *
16471147 GCATCGTCGGAGAACCTGACCAGCGGCATTCTGGTT-CTAGTGATCGGGGGGCCGGGGGGTGTGC
130 GCATCGCCGGAGAACCTGACCGGCAGCATTAGGGTTCCGA-CGATCGGGGGGCCGGGGGGTGTGC
* *
16471211 GCACATGATGTGCGATGGGTGCTGGTACTTGGACCTTAT-TTGGCCCCCTATCCCTTATCAAACC
194 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * **
16471275 TCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCCGCCAGTAGCCATTAA
259 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAA
* * * *
16471340 AGTGTCCGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGC
324 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
16471405 TGAATTATTTTGTGCATGCCAACAAATATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACT
389 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
** *
16471470 CCTTCCGAAAAAATTTTAAAAAAT-CTCGAACCAAAAAAAGTTTCAAAAATTGTGAAAAATAGAA
454 CCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* * *
16471534 AACAAGTCGCCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGC
518 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * * *
16471599 CATAAAAATAGCAATGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
583 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* ** * * *
16471664 TCCATGGCTTATGCATCCCGTCTCTCTGGTCGGGGTAGT----GCCCG-CCCACCCGCTCGTTTC
648 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCGCCCGCTCGTTTC
*
16471724 GTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTC
713 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
16471761 GACTGACGGC
Statistics
Matches: 5348, Mismatches: 662, Indels: 282
0.85 0.11 0.04
Matches are distributed among these distances:
866 1 0.00
867 25 0.00
868 152 0.03
869 308 0.06
870 13 0.00
871 98 0.02
872 3 0.00
873 4 0.00
874 5 0.00
877 1 0.00
879 1 0.00
880 8 0.00
881 1 0.00
882 1 0.00
883 104 0.02
887 138 0.03
891 1 0.00
893 54 0.01
895 101 0.02
896 145 0.03
897 1022 0.19
898 100 0.02
899 16 0.00
900 19 0.00
901 10 0.00
902 645 0.12
903 439 0.08
904 284 0.05
905 34 0.01
906 57 0.01
907 18 0.00
908 69 0.01
909 278 0.05
910 27 0.01
911 106 0.02
912 80 0.01
913 280 0.05
914 115 0.02
915 395 0.07
916 87 0.02
917 26 0.00
918 44 0.01
919 31 0.01
920 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (898 bp):
TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAG
CATCGCCGGAGAACCTGACCGGCAGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGC
ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAG
TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
TTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCGCCCGCTCGTTTCGTC
GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGCAGC
AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
Found at i:16469229 original size:26 final size:26
Alignment explanation
Indices: 16469192--16469244 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16469182 GTTGACTTAG
*
16469192 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
16469218 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
16469244 G
1 G
16469245 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:16471046 original size:26 final size:26
Alignment explanation
Indices: 16471006--16471056 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16470996 TGGCTTAGGC
*
16471006 ATACAGAGTTAATTCCTAGTCTAAGT
1 ATACAGAGTTAATTCCCAGTCTAAGT
* *
16471032 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTAATTCCCAGTCTAAG
16471057 ATCAGACTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTAATTCCCAGTCTAAGT
Found at i:16472326 original size:600 final size:595
Alignment explanation
Indices: 16471192--16472360 Score: 1571
Period size: 600 Copynumber: 2.0 Consensus size: 595
16471182 TCTAGTGATC
*
16471192 GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGACCTTATTTGGCCC
1 GGGGGGCCGGGCGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGACCTTATTTGGCCC
*
16471257 CCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTT
66 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTT
16471322 GCCGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGT
131 GCCGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
16471387 ACACTTTGACTTTTTAGCTGAATTATTTTGTGCATGCCAACAAATATACAAGGATCACGTCAACC
196 ACAATTCGACTTTTTAGCTGAATTATTTTGTGCATGCCAAAAAAAATACAAGGATCAC--CAACC
* * *
16471452 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCAAAAAAAGTTTCAAA
259 AAGTTTGGGACCAAAACTCCTTCCAAAAAAAGTTTAAAAAATCTCGAA-CAAAAAAAGTTTCAAA
* * * * *
16471517 AATTGTGAAAAATAGAAAACAAGTCGCCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCAT
323 AATCGCGAAAAATAGAAAACAAGTCGCCTTGCCATGAAACTTAACGTGAAGGCTTAAAGGACCAT
16471582 TGTATGAATTTACAAGCCATAAAAATAGCAATGGCACGTAGAAATATGAAGATGTGCCTAAACCC
388 TGTATGAATTTACAAGCCATAAAAATAGCAATGGCACGTAGAAATATGAAGATGTGCCTAAACCC
* * ***
16471647 ACCTACCACCCTATCGATCCATGGCTTATGCATCCCGTCTCTCTGGTCGGGGTAGTGCCCGCCCA
453 ACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGTCCACGTAGTGCCCGCCCA
*
16471712 CCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCGACTGACGGCATCGGG
518 CCCGCTCGTTTCGTCGATCGGCTTAGGCATACGGAGTTCATTCCCAGTCGACTGACGGCATCGGG
16471777 GTTTCGACAATCG
583 GTTTCGACAATCG
* ***
16471790 GGGGGGCCGGGCGG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTTTC
1 GGGGGGCCGGGCGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGACCTTAT-TTGGCC
* * *
16471854 CCCTATCGCTCATCAAACCTCGAGAACTCACACCCCCCTTCAAGAGCATTTGAGATTTTATAGGT
65 CCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCCTTAAAAAGCATTTGAGATTTTATAGGT
* *
16471919 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTCAAATGGTCACAAAATCT
129 TTGCCGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACA-TTTTTTTCAAATGGTCACAAAATCT
* * * * *
16471984 TGTACAATTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACGAGGATCA-CATC
193 TGTACAATTCGACTTTTTAGCTGAATTATTTTGTGCATGCCAAAAAAAATACAAGGATCACCAAC
* ** *
16472048 TAAG-TT-GGACCAAAACT-C-TCCAAAAAAAGTTTAAAAGAATCTCGAGA-GTAAAAAGTTT-T
258 CAAGTTTGGGACCAAAACTCCTTCCAAAAAAAGTTTAAAA-AATCTCGA-ACAAAAAAAGTTTCA
* * *
16472107 GAAATCGCG-AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAAGGACC
321 AAAATCGCGAAAAATAGAAAACAAGTCGCCTTGCCATGAAACTTAACGTGAAGGCTTAAAGGACC
* * *
16472171 A-TGTATGAATTTTACAAGCCATAAAAATGGCATTGG-ACG-CGAAAT-TGAAGATGT-CCTAAA
386 ATTGTATGAA-TTTACAAGCCATAAAAATAGCAATGGCACGTAGAAATATGAAGATGTGCCTAAA
* *
16472231 -CCACCT-CGCATCCCTATCGATGCTACGGCTTGCGCATCCCGTCTCTCTGG-CCACGTAGCTGC
450 CCCACCTAC-CA-CCCTATCGAT-CCACGGCTTACGCATCCCGTCTCTCTGGTCCACGTAG-T--
*
16472293 CAGCCCGCCCACCCGGCCGCTTGCTTGTTTCGTCGATCGGCTTAGGCATATGGAGTTCATTCCCA
509 --GCCCGCCCA--C--CCGC-T-C--GTTTCGTCGATCGGCTTAGGCATACGGAGTTCATTCCCA
16472358 GTC
564 GTC
16472361 TAAGATTAGA
Statistics
Matches: 502, Mismatches: 47, Indels: 42
0.85 0.08 0.07
Matches are distributed among these distances:
585 1 0.00
586 8 0.02
587 21 0.04
588 34 0.07
589 5 0.01
590 11 0.02
591 75 0.15
592 15 0.03
593 25 0.05
594 10 0.02
595 11 0.02
596 6 0.01
597 49 0.10
598 47 0.09
599 67 0.13
600 117 0.23
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (595 bp):
GGGGGGCCGGGCGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGACCTTATTTGGCCC
CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTT
GCCGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGT
ACAATTCGACTTTTTAGCTGAATTATTTTGTGCATGCCAAAAAAAATACAAGGATCACCAACCAA
GTTTGGGACCAAAACTCCTTCCAAAAAAAGTTTAAAAAATCTCGAACAAAAAAAGTTTCAAAAAT
CGCGAAAAATAGAAAACAAGTCGCCTTGCCATGAAACTTAACGTGAAGGCTTAAAGGACCATTGT
ATGAATTTACAAGCCATAAAAATAGCAATGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
TACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGTCCACGTAGTGCCCGCCCACCC
GCTCGTTTCGTCGATCGGCTTAGGCATACGGAGTTCATTCCCAGTCGACTGACGGCATCGGGGTT
TCGACAATCG
Found at i:16472533 original size:26 final size:26
Alignment explanation
Indices: 16472497--16472549 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16472487 GTTGACTTAG
16472497 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16472523 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16472549 G
1 G
16472550 ACCAGATTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16473426 original size:26 final size:26
Alignment explanation
Indices: 16473396--16473448 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16473386 GTTGACTTAG
* * *
16473396 GCATACGGAGTTCATTCTCGGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16473422 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16473448 G
1 G
16473449 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16473464 original size:899 final size:893
Alignment explanation
Indices: 16471765--16476463 Score: 5873
Period size: 899 Copynumber: 5.3 Consensus size: 893
16471755 CCAGTCGACT
* * * *
16471765 GACGGCATCGGGGTTTCGACAATCGGGGGGGCCGGGCGG-GTGCGCACATGATGTGCGATGGGTG
1 GACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*** *
16471829 CTGGTACTTGGCCCTTATATTTTTCCCCTATCGCTCATCAAACCTCGAGAACTCACACCCCCCTT
65 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCCTT
* * *
16471894 CAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
129 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
* *
16471959 TTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGATTTTTTTTGTGCATGC
194 -TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
16472024 CAAAAAAAATACGAGGATCACATCT---AAG-TT-GGACCAAAACT-C-TCCAAAAAAAGTTTAA
258 CAACAAAAATACAAGGATCACATCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTTTAA
* ** *
16472082 AAGAATCTCGAGA-GTAAAAAGTTTTG-AAATCGCG-AAAATAGAAAACGAGTCGTCTTGCCATG
323 AA-AATCCCGA-ACGCCAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
16472144 AAACTTAACGTGAAGGCTTAAAGGACCA-TGTATGAATTTTACAAGCCATAAAAATGGCATTGG-
386 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA-TTTACAAGCCATAAAAATGGCATTGGC
*
16472207 ACGC-GAAAT-TGAAGATGT-CCTAAA-CCACCT-CGCATCCCTATCGATGCTACGGCTTGCGCA
450 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC-CA-CCCTATCGAT-CCACGGCTTGCGCA
* * * * * *
16472267 TCCCGTCTCTCTGGCC-ACGTAGCTGCCAGCCCGCCCACCCGGCCGCTTGCTTGTTTCGTCGATC
512 TCCCGTCTCTCTGGCCGGCGTAG--GCCCGCCCG--C-CCC-GCC-C--GCTCGTTTCATCGGTT
* * * ** **
16472331 GGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTAGATC-GAACCGAAGGTTGCGACAGTGG
568 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAG-ACCGAGGGTTGCGGTAGCAG
* ** * * * * ** *
16472395 GATTGATAGCACGCAGAGGGGGACCCGGTTGATCGCCGGCTGGCGCATCATGCCTCTCTGGCCGA
632 GATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGA
* * *
16472460 TTGAGCGCCCGCACGCTCCTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
697 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* ** * *
16472525 ATACGGAGTTCATTCCCAGTCTAAGACCAGATTGGACCGAGGGTTGCGACAGCACTTGCTGGGCT
762 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTAGGCT
* *
16472590 CGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCATCATCGCTAGAGCATCGCCGTAGAAC
827 CGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC--GAGCATCG-CG-AGAAC
16472655 CTGACC
888 CTGACC
*
16472661 GACGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
1 GACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * * * ** *
16472726 TGGCACTTGGCCTTTATATTGGGCCCCTATCTCTCATCAAATTTTGAGAACTCACACCCCCTTAA
66 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
16472791 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
131 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
* *
16472856 TTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTGTGTGCATGCCAA
196 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
16472921 CAAAAATACAAGGATCACGTCTACCAAG-TTGGGACCGAAACTCCTTCCGAAAAAATTTTAAAAA
261 CAAAAATACAAGGATCACATCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTTTAAAAA
** ** *
16472985 ATCCCGAATCGCCAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAAC
326 ATCCCGAA-CGCCAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
16473050 TTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCACGCA
390 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
*
16473115 GAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCACGGCTTGCGGATCCCGTCT
455 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
16473179 CTCTGGCCGGCATAGCGCCCGCCCGTCCGTCCGCCCGCTCGTTTCATTGATTGGCTTAGGCATAC
520 CTCTGGCCGGCGTAG-GCCCGCCCG-CC--CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* * * * * *
16473244 GGAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTTG-GGTAGCAAGATCAGCAGCATGC
581 GGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGC
* * * * ** *
16473308 AGAGGGGGACCCAGTCGACCCCCATCTTGTGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCAA
646 AGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCAC
* * * * *
16473373 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCTCGGTCTAAGCATACAGAGTTCATT
711 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * *
16473438 CCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTCGAGCATGTGCTGG
776 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTAGGCTCGAGCATGTGCTGG
*
16473503 TGCTGCATTTTTCTTCGTCGGGG-ACCAT--C-A-C--CG-GAGAACCTGACC
841 TGCCGCATTTTTCTTCGTCGGGGCACCATCGCGAGCATCGCGAGAACCTGACC
** * * *
16473548 GACTACATTGGGGTTCCGACGATCGGGGGTGTCGGGGGGGTGTGCGTACATGATGTGGGATGGGT
1 GACGGCATTGGGGTTCCGACGATCGGGGG-G-CCGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
16473613 GCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
64 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
16473678 AAAGTGCATTTAAGATTTCACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
129 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
* *
16473743 TATTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCAAGC
194 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGC
* * *
16473808 CAAAAAAAATACAAGGATCACATCTACCAAGTTTGTTG-CCAAAACTCCTTCTAAAAAAATTTTA
258 CAACAAAAATACAAGGATCACATCTACCAAGTTTG-GGACCAAAACTCCTTCCAAAAAAATTTTA
* * *
16473872 AAGAATCTCGAAC-CCAAAAAGTTTTGGAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
322 AAAAATCCCGAACGCC-AAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
16473936 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCATTGGCA
386 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
16474001 CGTAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
451 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * * *
16474066 ATCTCTCCGGCCGGCGTACTGCTCGTCCG-CTCGCCCGCTCATTT-AGTCGGTTGGCTTAGGCAT
516 GTCTCTCTGGCCGGCGTA-GGCCCGCCCGCCCCGCCCGCTCGTTTCA-TCGGTTGGCTTAGGCAT
* * * * ** * * * *
16474129 ACGAAGTTCATT-TCGGTCTAAGATTGGACCAGATTGAGGGTTGTGGCAACGGGATCGGCAGCAC
579 ACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCAC
* * * * * * *
16474193 GCA-AGGGGGACCCGATAGATCCTCGGCTTGCGCATCCCGTCTCTCTGGCCGACTGAGCGCCCAC
644 GCAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGC
*
16474257 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGACTAAGCATACGGAGTTCA
709 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * *
16474322 TTCCCAATCTAAGATCGGATCGGACCGAGGGTTGCGACTGCACATGCTAGGCTCGGGCATGTGCT
774 TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTAGGCTCGAGCATGTGCT
*
16474387 GGTGCCGCATTTTTCTTC-TCCGGGGCACCAT--C--G--TCG-GAGAACGTGACC
839 GGTGCCGCATTTTTCTTCGT-CGGGGCACCATCGCGAGCATCGCGAGAACCTGACC
* ** * *
16474435 GACGACATTATGGTTCTGGA-GATCGAGGGGGCCGGGCGGGGTGTGCGCACATGATGTGTGATGG
1 GACGGCATTGGGGTTC-CGACGATCG-GGGGGCC-GG-GGGGTGTGCGCACATGATGTGCGATGG
* * *
16474499 GTGCTGGTACTTGGCCCTTATATCGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACACCCCC
62 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * *
16474564 TTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTGAAATGGGGAT
127 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
* *
16474629 ACTTTTTTCAAATGGTCACAAAATCTTGTATACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG
192 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * *
16474694 CCAACAAAAATACAAGGATCACGTGTACCAAGTTTGGTACCAAAACTCCTTCTAAAAAAATTTTA
257 CCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTTTA
*
16474759 AAAAATCCCGAACCCCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
322 AAAAATCCCGAACGCC-AAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
16474824 AAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
386 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* ** *
16474889 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCGTCCTATCGATCCACGGCCTGCGCATCCC
451 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* ** * * *
16474954 ATCTCTCTGTTCGACGTA-G--TGCCCG-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
516 GTCTCTCTGGCCGGCGTAGGCCCGCCCGCCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* * * * ** * *
16475015 GGAGTTCATTCCCAGTCTAAGATTGGACCAAACTGAGGGTTTCAATAGCAGGATCGGTAGCATGC
581 GGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGC
* * * * * * *
16475080 AGAGGGGGACTCGGTCGATCCCTAGCTTGCACATCTCGCCCCTCTAGTCGACTGAGCGCCCGTAC
646 AGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCAC
* *
16475145 GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATT
711 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * *
16475210 CACAGTCTAAGATCAGACCAGACCAATGGTTGC-AGCAGCACATGCTAGGCTCGGGCATGTGCTG
776 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA-CAGCACATGCTAGGCTCGAGCATGTGCTG
* *
16475274 GTGCCGCATTTTTCTTCG-CTGGGGCACCATCGATGGAGCATTGTCGGAGAACCTGACC
840 GTGCCGCATTTTTCTTCGTC-GGGGCACCATCG--CGAGCATCG-C-GAGAACCTGACC
* * * * * *
16475332 TG-CGGCATTGAGTTTCCAACGATCGGGGGGCTGGGGTGGGGTGTGCGCACTTGATGTGTGATGG
1 -GACGGCATTGGGGTTCCGACGATCGGGGGGC--CGG-GGGGTGTGCGCACATGATGTGCGATGG
* *
16475396 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTTGAGAACTCACACCCCC
62 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
16475461 TTAAAGAGCAGTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
127 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
* *
16475526 ACTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCTT
192 AC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
16475591 GCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCCAAAAAAATTT
256 GCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGACCAAAACTCCTT-CCAAAAAAATTT
* * * *
16475656 TAAAAAATTCCTAAC-CACAAAAAATTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCC
320 TAAAAAATCCCGAACGC-C-AAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
16475720 ATGAAACTTCATGTGAAGGCTTCAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTG
383 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
16475785 GCATGCAGAAATATGGAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGGCTTGCGCAT
448 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
16475850 CCCGTCTCTCAGGCCGGCGTAGTGCCCGCCCG-CCCGTCCTCTCATTTCATCGGTAGGCTTAGGC
513 CCCGTCTCTCTGGCCGGCGTAG-GCCCGCCCGCCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
* * * * * * *
16475914 ATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGTAGCAAGATTGGTC-G
577 ATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGTAGCAGGATCGG-CAG
* * ** * * * * *
16475978 CACGTAGAGGGGGACCTGACCGAT-CCCTGAATTACGCATCCCGCCCCTCTGGTCGACTGAGCAC
641 CACGCAGAGGGGGACCCGGTCGATCCCCAG-CTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGC
* * * * * * *
16476042 CGGTACGCCCGTTTCATGGGTTGACTTAGGCATACAGAGTTCGA-TCCTAGTCTAAGCATACAGA
705 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC-ATTCCCAGTCTAAGCATACGGA
* * *
16476106 GTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTC-AGGCA
769 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTAGGCTCGA-GCA
* * ** * *
16476170 TGTGCTGGTGCCACATTTTTCTTCGCCAAGGCACCATCGCCGGAGCATCACCGGAGAACCTGATC
833 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-C-GAGCATC-GC-GAGAACCTGACC
*
16476235 GGCGGCATTGGGGTTCCGGA-GATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGG
1 GACGGCATTGGGGTTCC-GACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGG
* * * * *
16476299 TGATGGTACTTGGACCTTATATTGGCCCCCTCTCCCTCATCAAACCTCGAGAACTCAAACCTCCT
63 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
16476364 TAAAGAGCATTTGAGATTTTACGGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACA
128 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
**
16476429 CTTTTTTCAAATTATCACAAAATCTTGTACACTTC
193 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
16476464 ATGTGAAGGC
Statistics
Matches: 3322, Mismatches: 399, Indels: 159
0.86 0.10 0.04
Matches are distributed among these distances:
884 45 0.01
885 45 0.01
886 403 0.12
887 215 0.06
888 386 0.12
889 199 0.06
890 184 0.06
891 84 0.03
892 3 0.00
893 1 0.00
894 84 0.03
895 82 0.02
896 101 0.03
897 180 0.05
898 123 0.04
899 415 0.12
900 86 0.03
901 39 0.01
902 228 0.07
903 329 0.10
904 53 0.02
905 22 0.01
906 6 0.00
907 8 0.00
908 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (893 bp):
GACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACATCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTTTAAAAA
ATCCCGAACGCCAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGGCGTAGGCCCGCCCGCCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGG
GGGACCCGGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCG
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCG
CATTTTTCTTCGTCGGGGCACCATCGCGAGCATCGCGAGAACCTGACC
Found at i:16475204 original size:26 final size:26
Alignment explanation
Indices: 16475168--16475220 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16475158 GTTGACTTAG
* *
16475168 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCACAGTCTAA
*
16475194 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
16475220 G
1 G
16475221 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:16475667 original size:26 final size:27
Alignment explanation
Indices: 16475633--16475688 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
16475623 GTTTGGGGCC
**
16475633 AAAACTCCTTCCCA-AAAAAATTTTAA
1 AAAACTCCTAACCACAAAAAATTTTAA
* *
16475659 AAAATTCCTAACCACAAAAAATTTTGA
1 AAAACTCCTAACCACAAAAAATTTTAA
16475686 AAA
1 AAA
16475689 TCGTGAAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 11 0.44
27 14 0.56
ACGTcount: A:0.54, C:0.20, G:0.02, T:0.25
Consensus pattern (27 bp):
AAAACTCCTAACCACAAAAAATTTTAA
Found at i:16476107 original size:26 final size:26
Alignment explanation
Indices: 16476071--16476123 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16476061 GTTGACTTAG
*
16476071 GCATACAGAGTTCGA-TCCTAGTCTAA
1 GCATACAGAGTTC-ATTCCCAGTCTAA
16476097 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16476123 G
1 G
16476124 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16476826 original size:26 final size:26
Alignment explanation
Indices: 16476796--16476848 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16476786 GTTGACATAG
*
16476796 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16476822 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16476848 G
1 G
16476849 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16477667 original size:26 final size:26
Alignment explanation
Indices: 16477637--16477689 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16477627 GTTGACTTAG
*
16477637 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16477663 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16477689 G
1 G
16477690 ATCGAACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16478539 original size:25 final size:25
Alignment explanation
Indices: 16478505--16478556 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
16478495 TGGGTTGACT
16478505 TAGCATACGGAGTTCATTCCCAGTC
1 TAGCATACGGAGTTCATTCCCAGTC
16478530 TAGCATACGGAGTTCATTCCCAGTC
1 TAGCATACGGAGTTCATTCCCAGTC
16478555 TA
1 TA
16478557 AGATCAACCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (25 bp):
TAGCATACGGAGTTCATTCCCAGTC
Found at i:16481200 original size:26 final size:26
Alignment explanation
Indices: 16481170--16481222 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16481160 GTTGACTTAG
* *
16481170 GCATACGGAGTTCATTTCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16481196 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16481222 G
1 G
16481223 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16482973 original size:26 final size:26
Alignment explanation
Indices: 16482944--16482996 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16482934 GTTGACTTAG
16482944 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
16482970 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16482996 G
1 G
16482997 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16483077 original size:890 final size:884
Alignment explanation
Indices: 16476913--16483389 Score: 7168
Period size: 902 Copynumber: 7.3 Consensus size: 884
16476903 CAATGATCGA
* ** *
16476913 CGGCATTGGAGTTCCGGTGATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCAATGGGTGC
1 CGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
16476977 TGGTACTT-GCCCTTATATTGG-CCCCTAT-CCTCACCAAACCTCGA-AGACTCACACCCCTTAA
65 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA-ACTCACACCCCTTAA
* * *
16477038 AGAGCATTTCAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGTAATGGGGGCACTT
129 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
16477102 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAA
194 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * * * * *
16477167 AAAAAATACAAGGATCACGTCTAACATGTTTGGGACCACAACTCCTTTCGAAAAAATTTTAAAAA
259 CAAAAATACAAGGATCACGTCTACCAAGTTTGGG-GCAAAACTCCTTCCCAAAAAATTTTAAAAA
* *
16477232 ATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAAC
323 ATTCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * *
16477297 TTAACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCATGCA
388 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * * *
16477362 GAAATATGAAGATGTGTCTAAACTCACCTACCACTCTATCGATCAACGGCTTGCGCATCCCGT-T
453 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * * *
16477426 GCTCTGGTCGGCGTAGTG--CCCGCCCGC-C-TGCTCGTTTCGTCAGTTGGCTTAGGTATACGGA
518 -CTCTGGCCGACGTAGTGCCCCCCCCCGCTCGCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* ** * * ** *
16477487 GTTCATTCCCAATCTAAGATTTGACCAAACTGAGGGTTGTGGCAGTAGGATCGGCAGCGCACAGA
582 GTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGATAGCACACAGA
* * * * * * **
16477552 GGGGGACCTGGTCGATCCCCGGCTTACGCATCCCGCCCCTCTAGTTGGCTGAGCAACCGCACGCT
647 -GGGGACC-GATCGATCCCCGACTTGCTCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCT
*
16477617 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCC
710 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* ** * * * *
16477682 AGTCTAAGATCGAACTAGACCAAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGTTGGTGC
775 AGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
** *
16477747 CGCATTTTTCTTCGTCGGGGCCCCATCGTCGGAGCATGTCGGAGAACCTGACCGG
840 CGCATTTTTCTTCACCGGGGCACCA---TC--A-C----CGGAGAACCTGACCGG
* * * *
16477802 CGGCATT--GGTTCCAACGATCTGGGGGCC--GGGGGTGTGCACACATCATGTGCGATGGGTGCT
1 CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
16477863 GGTACTTGGCCCTTATATTGTG-CCCCTATCCCTCATCAAAACTCGGGAAGCTCACACCCCTTAA
66 GGTACTTGGCCCTTATATTG-GCCCCCTATCCCTCATCAAACCTCGAGAA-CTCACACCCCTTAA
* * * *
16477927 AGAGCATTTGAG--TTTATAGGTTTG-TACTAGTAGCCATTAAACTGTCTGAAATGGGGACACTT
129 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
**
16477989 TTTTCAAATTTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
194 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * **
16478054 CAAAAATACAAGGATCA-GT-TCCCAAGTTTGGGGTTAAAACTCCTTTCGAAAAAAATTTTTAAA
259 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCC-TTCCCAAAAAA-TTTTAAA
** * *
16478117 AAATAT-CGAACCGCAAAAAGTTTCAAAAATCATG-AAAATAAAAAACGAGTCGTCTTGCCATGA
321 AAAT-TCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
16478180 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGC-TCTGGCA
385 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT-TGGCA
* * * **
16478244 CACAGAAATAATGAAGAT-TGTCT-AACCCACCTACCACCCTATCGGTTAACGGCTTGCGCATCC
449 CGCAGAAAT-ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
16478307 CGTCTCTCT-G-CGACATAGTG--CCGCCCCG--C-CGCTCGTTTCATCGGTT-GCTTAGGCATA
513 CGTCTCTCTGGCCGACGTAGTGCCCCCCCCCGCTCGCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * ** * ** * *
16478364 C-GAATTCATTCCCAATCTAAGATTGGACCAGACCGAGGGTTACGGCAGTAGGATCGGTAGCAC-
578 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGATAGCACA
* * * *
16478427 GAG-GGGGACCGGTC-ATCCTCGACTTGCGT-ATCCCGCCCCTCT-GC--GCTAAGCG-CCGCAC
643 CAGAGGGGACCGATCGATCCCCGACTTGC-TCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCAC
* * *
16478485 GTTTGTTTCGTGGGTTGACTTA-GCATACGGAGTTCATTCCCAGTCT-AGCATACGGAGTTCATT
707 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * *
16478548 CCCAGTCTAAGATC-AACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATTGTGCTG
772 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA-TGTGCTG
* * *
16478612 GTGCTGAATTTTTCTTCACCGGGGCACCATCGCCGGAGAACCTGACCGG
836 GTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGAACCTGACCGG
***
16478661 CGGCATTGGGGTTCC-AGCGATCGGGGGGGCTAAGGGGGTGTGCGCACATGATGTGCGATGGGTG
1 CGGCATTGGGGTTCCGA-CGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
16478725 CTGGTACTTGGCCGTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTA
64 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTA
* * * * * * *
16478790 AGGAGCATTTGAGACTTTACAGGTTTGCTGCTAGCAGCAATTAAAATGTCTTAAATGGGGACACT
128 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-
* *
16478855 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTGTGCATGCC
192 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* ** * *
16478920 AACAAAAATACAAGGATCATGTCTAATAACTTT-GGG-AGAAACTCCTT-CCGAAAAATTTTAAA
257 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCA-AAACTCCTTCCCAAAAAATTTTAAA
** ** * *
16478982 AAAACCCGAACCATAACAAAGTTTTGAAAATCGGGGAAAAAATAG-AAATGAGTCGTCTTGCCAT
321 AAATTCCGAACCATAA-AAAGTTTCAAAAATC-GTG-AAAAATAGAAAACGAGTCGTCTTGCCAT
* *
16479046 GAAACTTCATGTGAA-GCTTAGACGGACCATTGTATGAA--TAC-AGCCATAAAAAT-GCATTGG
383 GAAACTTCACGTGAAGGCTTA-AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
16479106 CATGCA-AAATATGAAGATGATGCCT-AAGCCACCTTA-CA-CCTATCGATCCACGGCTTGCGCA
447 CACGCAGAAATATGAAGATG-TGCCTAAACCCACC-TACCACCCTATCGATCCACGGCTTGCGCA
* * * * * * *
16479167 TCCCGCCTCTCTGG-CGACGTAATG-CCCGCGCCGCCCGCTACTCGTTTCATCGGTTGGCTATAG
510 TCCCGTCTCTCTGGCCGACGTAGTGCCCCCCCCCGCTCGC-GCTCGTTTCGTCGGTTGGCT-TAG
* ** * * * *** *
16479230 GCAT-CGGAGTTCATT-CCAGGGTCTTAGATTTGGACCGGATTGAAGG-TACAGCAGTAGGATC-
573 GCATACGGAGTTCATTCCCA--GTCTAAGA-TCAGACCAGACTGAGGGTTGTGGCAGCAGGATCG
* * * * *
16479291 ACAGCACACAGAGGGGACCCGATCGGTGCCC--CTTG-TGCATCCCGCCCCTTTTTGGC-GGTTG
635 ATAGCACACAGAGGGGA-CCGATCGATCCCCGACTTGCT-CATCCCGCCCC--TCTGGCTGGCTG
* * * *
16479352 AAG-ACCCGCTATGCTCGTTTCGGGTGGGTTGACTTA-GCAT-TGGAGGTTCATTCCCAGTCTAA
696 -AGCGCCCGC-ACGCTCGTTTC--ATGGGTTGACTTAGGCATACGGA-GTTCATTCCCAGTCTAA
* ** * **
16479414 GCATTATGGGAGTTCATTCCCAGTCTAAGATCGGGA-TAGACCAAGGGTTTTTGACAGCACATGC
756 GCA-TA-CGGAGTTCATTCCCAGTCTAAGATC-GGACCGGACCGAGGG-TTGCGACAGCACATGC
* * ** *
16479478 TAGGCTC-GGCATGTGCTGCTGTTGCATTTTTCTT---C---G-----T---CGGAAAACCTGAC
817 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGAACCTGAC
16479528 CGG
882 CGG
* * * * * * * *
16479531 TGGTATTGGGGTTCCAACGATAGAGAGGG-CTGGGGGGTGTGCGCACATGATGTGCGATGGTTGT
1 CGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
16479595 TGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
65 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAA
* * * *
16479660 AGAGCATTTGAGATTTAACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGACATGGGGACACGT
129 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
16479725 TTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
194 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
16479790 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCAAAAAAATTTTAAAAA
259 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTCCCAAAAAATTTTAAAAA
* **
16479855 ATCCCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
323 ATTCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
16479920 TTCACGTGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
388 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * * * *
16479985 GAAATATGTAGATGTCCCTAAACACACCTACCACCCTGTCGATCCACGGCTTGTGCATCCCGTCT
453 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
16480050 CTCTGGCCGATGTAGTGCCCGTACTTCCGCCCGC-C-CGCTCGTTTCGTTGGTTGGCTTAAGCAT
518 CTCTGGCCGACGTAGTGCCC---C--CC-CCCGCTCGCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* ** * ** *
16480113 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGATAGCAGGATCGACAGCAC
577 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGATAGCAC
* ** * * * * *
16480178 ACAGAGGGGGAACGGCCAATCCTCGGCTTACGCATCCCGCCCCTCTGG-TCGGCTGAGCGCCCGC
642 ACAGA-GGGGACCGATCGATCCCCGACTTGCTCATCCCGCCCCTCTGGCT-GGCTGAGCGCCCGC
* * * * * *
16480242 ACGCTCGTTTCGTGGGTTGACATAGGCATTCGTAGGTCATTCCCAGTCTAAGCATACAGAGTTCA
705 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * *
16480307 TTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCACATG-TCGAGCTCGGGCATCTGC
770 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCT-GGGCTCGGGCATGTGC
* *
16480371 TGGTGCCGTATTTTTCTTCACCGGGGCACCATCACCAGAGCATCACTGAAGAACCTAACCGG
834 TGGTGCCGCATTTTTCTTCACCGGGGCACCATCACC---G-------G-AGAACCTGACCGG
*** * * * ** * * * *
16480433 CTATATTAGGGTTCAGGCGATCAAGGGGTCAGGGGGGTGTGTGCACATGATGTGTGATGGGTGCT
1 CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * *
16480498 GGTACTTGGCCCTTATATCGACCCCCTATCCCTCATCAAACCTCGAGAAGTCACACCCCCTTGAA
66 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAA
* *
16480563 GAGCATTTGAGATTTTACATGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGGGACACTTT
130 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * **
16480628 TTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAACTTTTTTGTGCATGTGAAC
195 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
*
16480693 AAAAATACAAGGA-CAACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
260 AAAAATACAAGGATC-ACGTCTACCAAGTTTGGGG-CAAAACTCCTTCCCAAAAAATTTTAAAAA
* * * * *
16480757 A-TCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATTAAA
323 ATTC-CGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
16480821 CTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACGT
387 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* *
16480886 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAACCACGGCTTGCGCATCCTGTC
452 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
16480951 TCTTTGGCCAACGTAGTGCCCGTCCGCCCGCTCGTTCGCTCGTTCCGTCGGTTGGCTTAGGCATA
517 TCTCTGGCCGACGTAGTGCCC--CCCCCCGCTCG--CGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * *
16481016 CAGAGTTTATTCCCAGTCTAAGATCAGACCAGA-TCGAGGGTTGCT-ACAGCAGGATCAATAGCA
578 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTG-TGGCAGCAGGATCGATAGCA
** * * * * **
16481079 TGCAGAGGGGGACTCAACCGATCCCCGACTTGCGT-ATCCCGCCCGTCTGGCAGGCTGAGCGGTC
641 CACAGA-GGGGAC-CGATCGATCCCCGACTTGC-TCATCCCGCCCCTCTGGCTGGCTGAGCGCCC
* * *
16481143 GCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTTCCATTCTAAGCATACGGAGTT
703 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * ** * * *
16481208 CATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGTAGCACATGATGGGCTTGAGCATGTG
768 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG
** * *
16481273 CTGGTGCCATATTTTTCTTCACCGAGGCACCATCGCCGGACCATCACCGGAGAACCTGATCGA
833 CTGGTGCCGCATTTTTCTTCACCG-GG-------G-C--ACCATCACCGGAGAACCTGACCGG
* * *
16481336 CGGCATTGGGGTTCCGGCGATCGGTGGGGTCGGGGTGGGTGTGCGCACATGATGTGCGTTGGGTG
1 CGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGG-GGGTGTGCGCACATGATGTGCGATGGGTG
16481401 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTA
64 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC-CTTA
16481466 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
128 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
16481531 TTTTTCAAATGGTCACAAAATCTTGTACACTTCCAATTTTTAGCTGAATTGTTTTGTGCATGCCA
193 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
16481596 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCATCCGAAAAAATTGTAAAA
258 ACAAAAATACAAGGATCACGTCTACCAAGTTTGG-GGCAAAACTCCTTCCCAAAAAATTTTAAAA
* *
16481661 AA-TCTTGAACCATAAAAA----C-----TCGTGAAAAATAGAAAACGAGCCGTCTTGCCATGAA
322 AATTC-CGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
** **
16481716 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTGATAAAAATATCATTGGCACG
386 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* ** *
16481781 TAGAAATATGAAGATGTGCCTAAACCCACCTATGACCCTATCGATCCACGACTTGCGCATCCCGT
451 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
16481846 CTCTCTGGCCGACGCAGTG------CCCGC-C-CGCTCATTTCGTCGGTTGGCTTAGGCAGACGG
516 CTCTCTGGCCGACGTAGTGCCCCCCCCCGCTCGCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * * * *
16481903 AGTTCATTCCTAGTCTAAGATC-GAATCAAACTGAGGGTTGTGGTAGTACGATCGATAGCACATA
581 AGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGTGGCAGCAGGATCGATAGCACACA
* *** * *
16481967 GAGGGTGACCCGACCGATCCTTTACTTGCGCATCCCGCCCCTCTGGCTAGCTGAGCGCCCGCACG
645 GAGGG-GA-CCGATCGATCCCCGACTTGCTCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACG
* **
16482032 CTCGTTTTATGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
708 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * * * *
16482097 TCAATCTAAGATCAGATCGGACCGAGGGTTACGACAGCACATGCTGTGCTCAGGCATGTGCTGGT
773 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGT
* ** * *
16482162 GCCCCATTTTTCTTCGTCGGGGCACCATCACCGGAGAAACTGACAGG
838 GCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGAACCTGACCGG
* * * * * *
16482209 CAGCATTGGGGCTCTGATGATCGGGGAGGCCGGGGGGGTGTGCACACATGATGTGTGATGGGTGC
1 CGGCATTGGGGTTCCGACGATCGGGG-GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
16482274 TGGTACTTGGCCCTTATATTGGTCCCTTATCCCTCATCAAATCTCGAGAACTCACACCGCCTTAA
65 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-CCTTAA
* * *
16482339 AGAGCATTTGAAATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
129 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
16482404 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA
194 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
16482469 -AAAAATACAAGGATCACGTCTACCAAGTTTGGGGTAAAAATCC-TCCCAAAAATTTTTTAAAAA
259 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCCCAAAAA-ATTTTAAAAA
* * * * * * *
16482532 ATTCTGATCCACAACAAG-TTCGAAAATCGTGTAAAATAGAAAACGAGTCGTCCTGCCATGAAAC
323 ATTCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
16482596 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATACAAATGGCACTGGCACGTA
388 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* *
16482661 GAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCT
453 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
16482726 CTCTGGCCGGCGTAGTGCCCACCCACCCGCTCGCCCACTCATTTCATCGGTTGGCTTAGGCATAC
518 CTCTGGCCGACGTAGTGCCC-CCC-CCCGCTCG--CGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * ***
16482791 GGAGTTCACTCCCAGTCTAGGATCAGACCAGACTGAGGGTTGTGGTAGCCGGATTGATAGCATGT
579 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGATAGCACAC
* * * * *
16482856 AGAGGGGCACTCGATCGATCCCCGGCTTGCTCATCCCACCCCTTTGGCTGACTAAGCGCCCGCAC
644 AGAGGGG-AC-CGATCGATCCCCGACTTGCTCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCAC
* * *
16482921 GCTCGTTCCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT
707 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
** * *
16482986 CCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTAGGGCATGTGCTGG
772 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * *
16483051 GGCCGTATTTTTCTTCGCCAGGGCACCATTGCTGGAGCATCGTCGGAGAACCTGACCGA
837 TGCCGCATTTTTCTTCACCGGGGCACCA----T----CA-C--CGGAGAACCTGACCGG
* * * *
16483110 CAGCATTGGGGTTCCGACGATAGAGAGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
1 CGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
16483175 TGGTACTTGGTCCTTATATTGGCCCCCCATCTCTCATCAAACCTCGAGAACTCACACCTCCTTAA
65 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-CCTTAA
*
16483240 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
129 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
16483305 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATGTTTTTT-TGCATGCCA
194 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCA
*
16483369 AGAAAAATACAAGGATCACGT
258 ACAAAAATACAAGGATCACGT
16483390 GAAGGCTTAA
Statistics
Matches: 4781, Mismatches: 592, Indels: 417
0.83 0.10 0.07
Matches are distributed among these distances:
859 23 0.00
860 1 0.00
861 11 0.00
862 14 0.00
863 43 0.01
864 124 0.03
865 39 0.01
866 34 0.01
867 41 0.01
868 270 0.06
869 292 0.06
870 128 0.03
871 113 0.02
872 252 0.05
873 98 0.02
874 26 0.01
875 64 0.01
876 35 0.01
877 65 0.01
878 201 0.04
879 56 0.01
880 123 0.03
881 62 0.01
882 35 0.01
883 28 0.01
884 295 0.06
885 112 0.02
886 154 0.03
887 183 0.04
888 20 0.00
889 35 0.01
890 269 0.06
891 2 0.00
894 2 0.00
896 167 0.03
898 7 0.00
899 3 0.00
901 252 0.05
902 600 0.13
903 196 0.04
904 16 0.00
905 276 0.06
906 2 0.00
911 2 0.00
912 1 0.00
914 9 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (884 bp):
CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCCCAAAAAATTTTAAAAAATT
CCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGACGTAGTGCCCCCCCCCGCTCGCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGATAGCACACAGAGGGG
ACCGATCGATCCCCGACTTGCTCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTC
ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
AGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
TTTCTTCACCGGGGCACCATCACCGGAGAACCTGACCGG
Found at i:16484021 original size:26 final size:26
Alignment explanation
Indices: 16483992--16484068 Score: 145
Period size: 26 Copynumber: 3.0 Consensus size: 26
16483982 GGTCCGATCA
*
16483992 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
16484018 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
16484044 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
16484069 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:16485490 original size:26 final size:26
Alignment explanation
Indices: 16485452--16485504 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16485442 CTGGTCCAAT
*
16485452 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16485478 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16485504 C
1 C
16485505 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16485960 original size:881 final size:887
Alignment explanation
Indices: 16484121--16487316 Score: 3978
Period size: 881 Copynumber: 3.6 Consensus size: 887
16484111 CAGAGGGGTG
* * * * * *
16484121 CGATTTTTGAAACATTCTACGGTTTGGGATTTTTTAAACTTTTTTCAAAAGTAGTTTTGGCCCCA
1 CGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCA
* * *
16484186 AACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
66 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
16484251 ACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
131 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTG
16484316 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGG
196 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGG
* * * * *
16484381 ATAGAGGGCCAATATAAGGGACAAGTACGAGCACCCATCACAAATCATGAGCGCACACCCCCTCG
261 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCC-CG
* *
16484446 ACCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCTGGCGATGGC
325 GCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCG--GA-G--CT--CGATGGT
* *
16484511 GCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACCCTC
383 GCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
** * ** *
16484576 GGTCTGATCTGATCTTACACTGGGAATGAACTTTGTATGCTT--A--A-G--TCAA-T-CG-A--
448 GGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATG
* * * *
16484629 --T--GT--------G--ATGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGT
513 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * *
16484680 CGGGGATCGGTCGGGT-CCCCTCTGGGTGCTGTCGATCTTGCTACCGTAACCCTCTA-TCCGATC
578 CGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCT-CTGTAACCCTC-AGTCCGGTC
* * * *
16484743 CGATCTTAGGCTAGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAAGGAGTGGACGGACGGG
641 AGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---GAC-GA---G
* * ** * *
16484808 CGGGCGGGCACTACATCAACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGCGTGGTACGT
698 CGGGTGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
16484873 GGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
763 GGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*** * * *
16484938 ATGGTCCCTTAAATGTTCACGTTAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCA
828 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * **
16484998 CGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTATCCCCA
1 CGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCA
* * * * *
16485063 AACTTGGAAGACGTGATCCTTGTATTTTTTTTGGTGTGCAAAAAAAAAGTCAACTAAAAACTCGA
66 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
16485128 AGTGTACAAGATTTTATGAACATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTG
131 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTG
*
16485193 GTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGG
196 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGG
* **
16485258 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACACATTGCACATCATGTGCGCACACCCCCC-G
261 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGG
* * * * * *
16485322 -CCCCCCGATGGCCGAAACCCCAATACCGTCGATCAGGTTCTCC-G-G-T-GATGGTGCCTCGAC
326 CCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGAGCTCGATGGTGCCCCGAC
* * * * * *
16485382 GAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAATCCTCAGTCTGGT
391 AAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGAT
16485447 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
456 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
* *
16485512 AACCCACGAAATGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGG-GGGATGCGCAAGCCGAGGATC
521 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATC
* * * * * * *
16485576 GGTCGGGTCCCCCTCTGTGTGCTGCCAATCCTGGTGCTGGAACCCTCAGTCTGGTCTGATCTTAG
586 GGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCT-CTGTAACCCTCAGTCCGGTCAGATCTTAG
* * * *
16485641 ACTGGAAATGAACCCCATATGCCTAAGCCAACCGATGAAACGAG-CGAGTGGGTGGGCACTACAC
650 ACTGG-AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGACGAGCGGGTGGGCACTACAC
* * * *
16485705 CGGCTAGAGAGACAGGATGTGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCT
714 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
16485770 TCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
779 TCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* *
16485835 TCAGGTGAAGTTTCATGGCAAGACGACTCGTTTTGTATTTTTCA
844 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * *
16485879 CGATTTTTGAAACTTTTTAAGGTTCAGGATTTTTTAAAATTTGTTT-GGAAGGAGTTTTGGCCCC
1 CGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT-TTTCGAAAGGAGTTTTGGCCCC
* * *
16485943 AAACTTGGTAGACGTGATCCTTGTATTTTTTTT-TTCAAGCACAAAAAAATTCATCTAAAAACTC
65 AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGT-ATGCACAAAAAAATTCAGCTAAAAACTC
* * *
16486007 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCGGACACTTTAATGGCTAC
129 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTAC
* *
16486072 TGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAG
194 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
* * * *
16486137 GGATAGGGGGCCAATATAAGGGCAAAGTACCAGAACCCATCACCCATCTTGTGCGCACACCCCCC
259 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC
* * *
16486202 GGCCCCCCCGATTGTCGGAA-CCCAATGCCGCCGGTCAAGTTCTCCGACGATGCTCCGACGATGG
324 GGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCG--GA-GCT----CGATGG
** * * * *
16486266 TGCCCTAACAAAGAAAAAT-TGGCACCAGCACATGCTCAAGCCCAGCATGTGCTGCCGCACCCCT
382 TGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * * *
16486330 CGGTCTGGTCCAATCTTATACTGGGAATGAATTTCGTATGCTTAGACTGGGAATGAACTCCGTAT
447 CGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTAT
* * *
16486395 GCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
512 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * * * * *
16486460 CC-AGGGATCGGCCAGGTCCCCCTCTACGTGGTGTTGATCCTGCTATCGTAACCTTTAGTCCGGT
577 CCGA-GGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTCT-GTAACCCTCAGTCCGGT
* * * *
16486524 CAGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCGAATCGACGAAACGAGTAGACGGGCGG
640 CAGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-AGACGAGCGG
* *
16486589 GTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGG
701 GTGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
** * * *
16486654 TTTAGGCACATCTTCATATTTTT-CATGCCAATGCCATTTTAATGGCATGAAAATTCATACAATG
766 TTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
16486718 GTCCCTTCAGCCTTCACGTGAAGTTTCATGGCATGACGACTCGTTTTTTATTTTTCA
831 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
** ** * * * * * *
16486775 CGATTTTCAAAACTTTTTGGGGTTTGGGATTTTTGAAAATTTTTTTGGAAGGTGTTTTGGGCCCA
1 CGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCA
* * * * * *
16486840 AA-TTGGTAGACGTGATCCTTGTACTTTTTTTGGGATTCACAAAAAAATTTAGCTAAAAAATAGA
66 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
16486904 ATTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACA-CTGTAATGGCTACT
131 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCT-TAATGGCTACT
* * * *
16486968 AGCAACAAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGATTTGATGAGG
195 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
** ** *
16487033 GATAGGGGGCCAATATAAGGATCAAGTACCAGCACCCATTGCACATCATGTCCGCACACCCCCCG
260 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCG
* * *
16487098 GCCCCCCCGATCATCGGAACCCCATTGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGT
325 GCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCC-G-GA-GCT----CGATGGT
* ** *
16487163 GCCCCGACGAAGAAAAATGAAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTC
383 GCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* ** * *
16487228 GGTCCGATCTGATCTTAGACTTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
448 GGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATG
16487293 CCTAAGTCAACCCACGAAACGAGC
513 CCTAAGTCAACCCACGAAACGAGC
16487317 CGAGGATTGG
Statistics
Matches: 2010, Mismatches: 251, Indels: 96
0.85 0.11 0.04
Matches are distributed among these distances:
863 98 0.05
865 1 0.00
866 1 0.00
867 1 0.00
868 1 0.00
869 1 0.00
870 3 0.00
871 2 0.00
872 2 0.00
873 1 0.00
874 38 0.02
876 1 0.00
877 292 0.15
879 2 0.00
880 1 0.00
881 459 0.23
882 25 0.01
883 14 0.01
884 2 0.00
885 2 0.00
886 1 0.00
887 2 0.00
888 30 0.01
889 108 0.05
892 147 0.07
893 119 0.06
894 3 0.00
895 245 0.12
896 200 0.10
897 208 0.10
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (887 bp):
CGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCA
AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGA
AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTG
GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGG
ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGG
CCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGAGCTCGATGGTGCCCCGAC
AAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGAT
CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATC
GGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTCTGTAACCCTCAGTCCGGTCAGATCTTAGA
CTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGACGAGCGGGTGGGCACTACACCG
GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
Found at i:16486380 original size:26 final size:26
Alignment explanation
Indices: 16486344--16486396 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16486334 CTGGTCCAAT
* * *
16486344 CTTATACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16486370 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16486396 C
1 C
16486397 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16487270 original size:26 final size:26
Alignment explanation
Indices: 16487241--16487293 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16487231 CCGATCTGAT
*
16487241 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16487267 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16487293 C
1 C
16487294 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16489369 original size:25 final size:26
Alignment explanation
Indices: 16489335--16489386 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16489325 CTGGTCTGAT
16489335 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16489360 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16489386 C
1 C
16489387 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16490300 original size:26 final size:26
Alignment explanation
Indices: 16490249--16490301 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16490239 CTGGTCCGAT
* *
16490249 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16490275 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16490301 C
1 C
16490302 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16491169 original size:26 final size:26
Alignment explanation
Indices: 16491140--16491192 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16491130 CCGGTCCAAT
*
16491140 CTTAGATTGGCAATGAACTCCATATG
1 CTTAGACTGGCAATGAACTCCATATG
* *
16491166 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCATATG
16491192 C
1 C
16491193 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:16491996 original size:895 final size:894
Alignment explanation
Indices: 16488474--16492469 Score: 5137
Period size: 894 Copynumber: 4.4 Consensus size: 894
16488464 CCGGTCTGAT
** * * ** * * *
16488474 CTTAGACTGGGAATGAACTCCGTATAACTATGTCAACCCACGAAGTGAGCGTACGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
16488539 CGGCCAAAGGGGCGGGATGTGTAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGGCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCT-GCCATCC
* * * * *
16488604 TGCTG-TCGCAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCCATATGCCTCAGCCA
130 TGCTGCT-GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGACA
* *** * *
16488668 ACTGACGAAACGAGCGAGCGGGCGGGCACTACATTGGCTAGAGAGACGGGATGCACAAGCCGTGG
194 AC-GACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* **
16488733 ATCCATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
258 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
* * * *
16488798 GGCCTGTAAATTCATACACTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGT
323 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
* * *
16488863 TTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTT-TAGGATTTTTTAAATTTTTTTCGGAAG
388 TTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAG
* *** * * *
16488927 GTGTTTTATTCCCAAACATGGCAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTC
452 GAGTTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * *
16488992 AGCTAAAAATTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAA
517 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*** * * * *
16489057 TTTAATTTTTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTACGGAGGTGTGAGTTCTTG
582 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
16489122 AGGTTTGATGAGAGATAGGGGGCCAACAAAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
647 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* *
16489187 CGCACA---------CCCCCCCGATCGTCGGAACCCCAATGCCGA-CAGTCAGGTTCTCCGACGA
712 CGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCC-ACCGGTCAGGTTCTCCGACGA
* * * * *
16489242 TGCTCCGACGATGGTGCCTCGACGAAGAAAAATACGACACC-GATACAAGCTCGAGCCCAGCATG
776 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAG-CACATGCCCGAGCCCAGCATG
* * ** * *
16489306 TGCTGCCGTAAGCTTTC-GTCTGGTCTGATCTTAGACT-GGAATGAACTCCGTATG
840 TGCTACCGCAA-CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * **
16489360 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTGCAGGCATTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* ** * * **
16489425 CGGCCTGAGGGATGAGATGCGCAAGCCGAGGATCAACCGGGTCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCC-ATCC
* ** *
16489490 TGCTGCTGCAACCCTCTGTCTGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAA-ACCA
130 TGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGA-CA
* *
16489554 ACTGACAAAACGAGCAGGCTGGCGGGCGGGCGGGCACTACGACGGCCAGAGAGACGGGATGCGCA
194 AC-GACGAAAC--G-A-----GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
16489619 AGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACAT-TTCCATATTTCTGTGTGCCAATGC
250 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT-CATATTTCTGTGTGCCAATGC
* *
16489683 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCATCACGTGAA-TTACCATGGCAA
314 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT-TCATGGCAA
* * *
16489747 GATGACT-AGTTTTCAATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATT
378 GACGACTCA-TTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATT
* * *
16489811 TTTTCGGAAGTAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC
442 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
16489876 AAAAAGATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGAGTCCCCA
507 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
16489941 TTTTAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
572 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
16490006 TGAGTTCTCGAGGATTGATGAGGGATAGGGTGCCAATATAGGGGCCAAGTACCAGCACCCATCGC
637 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
*
16490071 ACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCATCGGTCAGGTT
702 ACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTT
*
16490136 CTCTGGCGATTCTCCGGTGATGCTCC-AGCGATGGTGCCCCGACGAAGAAAAAT-CTGGCACCAA
767 CTC---CGA-----C---GATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATAC-GGCACCAG
* * * *
16490199 CACATGCTCGA-CCCTAGCACGTGCTATCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAAT
819 CACATGCCCGAGCCC-AGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
*
16490263 GAACTTCGTATG
883 GAACTCCGTATG
* * *
16490275 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
16490340 CGGCCAGAGAGGCGGGATGCGCAAGCCGGGGATCGACCGAGTCCACCTTTGCGTGGTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCC-ATCC
* *
16490405 TGCTGCTGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA-ACCA
130 TGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGA-CA
*
16490469 ACCGACGAAACGA----GCGGGCGGGAACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
194 A-CGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* **
16490530 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCATCATATTTCTACGTGCCAATGCCATTTTTAT
258 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
* * *
16490595 GGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGACGACTCGT
323 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
* * * *
16490660 TTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGAGATTTTTT-AAATTTTTTCGGAGGG
388 TTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* *
16490724 AGTTTTGGCCCCAAAATTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTA
453 AGTTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
16490789 GCTAAAAACTCGAAGTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCTATTTCAAACACT
518 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * *
16490854 TTAATGGCTACTGGTAGCAAACCTATAAAATCTCGAATGCTCTTTAAGTGGGTGTGAGTTCTCGA
583 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
16490919 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGC
648 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * ** ** * * *
16490984 GCACAGCCCCCCC-GACCCCCCAATCGCTGGAACCGTAACACTATCGGTCAGGTTCTCCGATGAT
713 GCACA-CCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGAT
** * *
16491048 GCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGTCCAACATGTG
777 GCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * *
16491113 CTACCGCAACCCTTGGTCCGGTCCAATCTTAGATTGGCAATGAACTCCATATG
842 CTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
16491166 CTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCATGAAACGAGCGTGCGGGGGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
*** *
16491231 CGGCCAGAGGGGCGGGATGCGCAAATTGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCATTCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCA-TCC
* * * *
16491296 TACTGCTACAACCCTTGGTCAGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAA
130 TGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAA
* * * * * *
16491361 TCGACGAAATGAGTGGGTGGGCGGGCACTACGCCGACCAGAGAGACTGGATGCGCAAGCCGTGTA
195 -CGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
16491426 TCTATAGCGTGCTAGGTGGGTTTAGGCACATCTTCATAATTT-TGTGTGCCAATGCCATTTTTAT
259 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT-ATTTCTGTGTGCCAATGCCATTTTTAT
16491490 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
323 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
* * *
16491555 TTTCTAGTTTTCATGATTTTCCAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
388 TTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* * * * * *
16491620 AGTTTTGGCCCTAAACTTGGTAAACGTGATCGTTGTATTTTTCTTCGCATGCACAAAAAAATTCA
453 AGTTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
16491685 GCTAAAAACTCGAAGTGTACAAGATTTTGTAACCGTTTGAAAAAAGTGTCCCCATTTCAGAGACT
518 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
16491750 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTCAA
583 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
16491815 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCACACATCATGTGC
648 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* *
16491880 GCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCGATCAGGTTCT-CTAGCGAT
713 GCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGA-CGAT
* *
16491943 GCTCCGACGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
777 GCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * *
16492008 CTACCACAACCCTCAGTTCGGTCTGATCTTAGAATGGGAATGAACTCCGTATG
842 CTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * ** * *
16492061 CCTAGACTGGGAATGAACTCCGTATCCCTAAGTCAACCCATGAAATGAGCGTGAAGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* *** * *
16492126 CGGCCAGAGGGGTGGGATGCGCAAGCTAAGGATCGGCCAGGTCCCCCTCTGCGTGCTACCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCC-ATCC
* * * * * *
16492191 -GCTG-TCGTAACCCTCGGTGTGGT-TCAATCTTAGACTGAGAATGAACTCCGCATGCCTAAGCC
130 TGCTGCT-GCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGAC
* *
16492253 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTATGCCGGCTAGAGAGACGGGATGCGC
193 AA-CGACGAAACGA--------GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * *
16492318 AAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTACTATGTGCCAATGC
249 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGC
* * **
16492383 CATTTTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCTTGTGAAGTTTCATGGCAAG
314 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
16492448 ACGACTCATTTTCTATTTTTCA
379 ACGACTCATTTTCTATTTTTCA
16492470 CAAAAATTCA
Statistics
Matches: 2716, Mismatches: 322, Indels: 128
0.86 0.10 0.04
Matches are distributed among these distances:
885 2 0.00
886 164 0.06
887 1 0.00
888 1 0.00
889 1 0.00
890 1 0.00
891 281 0.10
892 5 0.00
893 6 0.00
894 521 0.19
895 454 0.17
896 263 0.10
899 3 0.00
901 3 0.00
902 469 0.17
903 252 0.09
904 3 0.00
906 3 0.00
911 1 0.00
912 1 0.00
913 9 0.00
914 78 0.03
915 193 0.07
916 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (894 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCATCCT
GCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAAC
GACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTT
CTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGT
TTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTC
CGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:16492073 original size:26 final size:26
Alignment explanation
Indices: 16492037--16492090 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
16492027 GGTCTGATCT
*
16492037 TAGAATGGGAATGAACTCCGTATGCC
1 TAGAATGGGAATGAACTCCGTATCCC
*
16492063 TAGACTGGGAATGAACTCCGTATCCC
1 TAGAATGGGAATGAACTCCGTATCCC
16492089 TA
1 TA
16492091 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
TAGAATGGGAATGAACTCCGTATCCC
Found at i:16492864 original size:26 final size:26
Alignment explanation
Indices: 16492828--16492880 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16492818 TCGGTCTGAT
16492828 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16492854 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16492880 C
1 C
16492881 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16493478 original size:793 final size:790
Alignment explanation
Indices: 16491676--16494860 Score: 4400
Period size: 794 Copynumber: 4.0 Consensus size: 790
16491666 GCATGCACAA
* *
16491676 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCGTTTGAAAAAAGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
16491741 TCAGAGACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGTG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
16491806 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCACAC
131 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*
16491871 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCGATCAGGTTCTC
196 ATCATGTGCACACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCACCGATCAGGTTCTC
16491936 TAG-CGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
260 -AGACGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* *
16492000 AGCATGTGCTACCACAACCCTCAGTTCGGTCTGATCTTAGAATGGGAATGAACTCCGTATGCCTA
324 AGCATGTGCTACCACAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA
*
16492065 GACTGGGAATGAACTCCGTATCCCTAAGTCAACCCATGAAATGAGCGTGAAGGCACTCAACCGGC
389 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTG-AGGCACTCAACCGGC
*
16492130 CAGAGGGGTGGGATGCGCAAGCTAAGGATCGGCCAGGTCCCCCTCTGCGTGCTACCAATCCGCTG
453 CAGAGGGGTGGGATGCGCAAGCCAAGGATCGGCCAGGTCCCCCTCTGCGTGCTACCAATCCGCTG
** * * *
16492195 TCGTAACCCTCGGTGTGGTTCAATCTTAGACTGAGAATGAACTCCGCATGCCTAAGCCAACCGAC
518 TCGTAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAACCGAC
* * * *
16492260 GAAACGAGCGGGCGGGCGGGCGGGCGGGCACTATGCCGGCTAGAGAGACGGGATGCGCAAGTCAT
583 AAAACGAGCGGGC--G-GGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCAT
*
16492325 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTACTATGTGCCAATGCCATTTTT
645 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTT
* * *
16492390 ACGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCTTGTGAAGTTTCATGGCAAGACGACTC
710 ACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACTT
* *
16492455 ATTTTCTATTTTTCAC
775 GTTTTCTATTTTTCAT
16492471 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
16492535 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
16492600 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCGCAC
131 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*
16492665 ATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCACCGATCAGGTTCTCT
196 ATCATGTGCACACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCACCGATCAGGTTCTC-
* * *
16492730 AG-CGATGCTCCGATGATGGTTCCCTGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
260 AGACGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
16492794 GCATGTGCTACCACAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
325 GCATGTGCTACCACAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
*
16492859 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGAAGGCACTCAACCGGCC
390 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTG-AGGCACTCAACCGGCC
* *
16492924 AGAGGGGTGGGATGCGCAAGCCAAGGATCGGCCAGGTTCCCCTCTGCGTGCTGCCAATCCGCTGT
454 AGAGGGGTGGGATGCGCAAGCCAAGGATCGGCCAGGTCCCCCTCTGCGTGCTACCAATCCGCTGT
* * * ** * **
16492989 CGTAACCCGCGGTCTGGTTTAATCTTAGACTGGGAATGAACTCCGCATGCCTAAACCAGTCGACA
519 CGTAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAACCGACA
* *
16493054 AAACGAGCGGGC-GGACGGGCGGGCACTATGCCGGCTAGAGAGACGGGATGCGCAAGTCATGGAT
584 AAACGAGCGGGCGGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCATGGAT
16493118 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTACGG
649 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTACGG
16493183 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACTTGTTT
714 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACTTGTTT
16493248 TCTATTTTTCAT
779 TCTATTTTTCAT
*
16493260 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
16493325 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
16493390 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCTCAC
131 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
16493455 ATCATG-GCACACACCACCCCCCCGGCCCCCCTGATCACCGGAACCCCAATGCCGCAGGTCAGGT
196 ATCATGTG--CACA-CA-CCCCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCACCGATCAGGT
* * * * * * ** *
16493519 TCTCCGACGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATGCGGAACCAACACATGCCTAAA
256 TCTCAGACGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* ** * * * *
16493584 CCCAGCATGTACT-GTAGCAACCCTCGGTCCGGT-TCGATCTTAAACTGGGAATGAACTCCATAT
321 CCCAGCATGTGCTACCA-CAACCCTCAGTTCGGTCT-GATCTTAGACTGGGAATGAACTCCGTAT
* * ** *
16493647 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGTTGCTCAG
384 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGAGG-CACTCAA
* * * * ** ** * * * *
16493712 TCGACTAGAGGGGTGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTTTGCGTGCTATCGATC
448 CCGGCCAGAGGGGTGGGATGCGCAAGCCAAGGATCGGCCAGGTCCCCCTCTGCGTGCTACCAATC
* * * * * *
16493777 TTGCTG-CAGTAACCCTCGATCCGATCCGATCTTAGTCTGGGAATGAACTCCGTATACCTAAGCC
513 -CGCTGTC-GTAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCC
* *
16493841 AACCGACGAAACGAGCGGGCGGGTGGACGGGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGACG
576 AACCGACAAAACGAGCGGGC--G-GGA--------CGGGCGGGCACTACGCCGGCCAGAGAGACG
* * * * * *
16493906 GGATGTGCAAGCCGTGGATCCATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTTTATGT
630 GGATGCGCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGT
* *
16493971 GCCAATGCCATTTTTACGG-TGTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCATGCAGTTT
695 GCCAATGCCATTTTTACGGCT-TGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTT
16494035 CATGGCAAGACGACTTGTTTTCTATTTTTCAT
759 CATGGCAAGACGACTTGTTTTCTATTTTTCAT
*
16494067 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATGTGAAAAAAGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * *
16494132 TCAGACACTTTAATGGTTACTGACAGCAAACCTATAAAATCTCAAATGCTTTTTAA-GGGATGTG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
16494196 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCCC
131 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * *
16494261 ATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCAGAACCCTAATGCCGCC-AGTCAGGTTCT
196 ATCATGTGCACACACCCCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCACCGA-TCAGGTTCT
* * * * * *
16494325 CCGACGATGGTCCAAC-ATGGTG-CCTCGATGAAGAAAAATGTGGCACCAGAACATGCCCGAGCC
259 CAGACGATGCTCCGACGATGGTGCCCT-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
**** * * * *
16494388 CAGCATGTGCTGTTGCAACCGTCTG-TCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCT
323 CAGCATGTGCTACCACAACCCTCAGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * * *
16494452 TAGATTGGGAATGGACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGCTCAGCCG
387 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGAG-GCACTCAACCG
* * * ** * * * ** * *
16494517 GCCAGAGGGGCGAGATGTGCAAGCCGGGGATCAGCCGGGTCCCCCTCTACGTGCTGTCGATCCTA
451 GCCAGAGGGGTGGGATGCGCAAGCCAAGGATCGGCCAGGTCCCCCTCTGCGTGCTACCAATCC-G
* * ** * * *
16494582 CTGCCGCAACCCTTAGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACC
515 CTGTCGTAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAACC
* * *
16494647 GACAAAACAAGCGGGCATGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGG
580 GACAAAACGAGCGGGC--G-GGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGT
* * * * ***
16494712 CGTGGATCGATGGGGTGGTAGATGGGTTTAGGCGCATCTTCATATTTCTCCATGCCAATGCCATT
642 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATT
* * * * *
16494777 TTTATGGCTTGCAAATTCATGCAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
707 TTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGA
16494842 CTTGTTTTCTATTTTTCAT
772 CTTGTTTTCTATTTTTCAT
16494861 GATTTTTGAA
Statistics
Matches: 2154, Mismatches: 200, Indels: 73
0.89 0.08 0.03
Matches are distributed among these distances:
789 246 0.11
790 137 0.06
791 3 0.00
792 2 0.00
793 380 0.18
794 561 0.26
795 123 0.06
799 3 0.00
801 3 0.00
802 265 0.12
803 51 0.02
804 8 0.00
805 3 0.00
806 75 0.03
807 294 0.14
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (790 bp):
AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
ATCATGTGCACACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCACCGATCAGGTTCTCA
GACGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
CATGTGCTACCACAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGAGGCACTCAACCGGCCAG
AGGGGTGGGATGCGCAAGCCAAGGATCGGCCAGGTCCCCCTCTGCGTGCTACCAATCCGCTGTCG
TAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAACCGACAAA
ACGAGCGGGCGGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCATGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTACGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACTTGTTTTC
TATTTTTCAT
Found at i:16493658 original size:26 final size:26
Alignment explanation
Indices: 16493622--16493674 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16493612 CCGGTTCGAT
16493622 CTTAAACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
16493648 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
16493674 C
1 C
16493675 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:16494453 original size:26 final size:26
Alignment explanation
Indices: 16494424--16494476 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16494414 CTGATCCGAT
16494424 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16494450 CTTAGATTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16494476 C
1 C
16494477 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16495929 original size:899 final size:895
Alignment explanation
Indices: 16494067--16498232 Score: 5223
Period size: 899 Copynumber: 4.7 Consensus size: 895
16494057 TATTTTTCAT
*
16494067 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATGTGAAAAAAGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * *
16494132 TCAGACACTTTAATGGTTACTGACAGCAAACCTATAAAATCTCAAATGCTTTTTAA-GGGATGTG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
16494196 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCCC
131 AGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
16494261 ATCATGTGCGCACA-CCCCCCGACCCCCCCGATCGTCAGAACCCTAATGCCGCCAGTCAGGTTCT
195 ATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * * * *
16494325 CCGACGATGGTCCAAC-ATGGTGCCTCGATGAAGAAAAATGTGGCACCAGAACATGCCCGAGCCC
260 TCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * *
16494389 AGCATGTGCTGTTGCAACCGTCTGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
325 AGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * *
16494454 GATTGGGAATGGACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGCTCAGCCGGC
390 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGAGCGGGCGCTCAGCCGGC
* * * * * *
16494519 CAGAGGGGC-GAGATGTGCAAGCCGGGGATCAGCCGGGTCCCCCTCTACGTGCTGTCGATCCTAC
455 CAGA-GGGCAG-GATGCGTAAGCCGGGGATCGGCCGGGTCCCCATCTACGTGCTGCCAATCCTAC
* *
16494583 TGCCGCAACCCTTAGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCG
518 TACCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCG
* * * *
16494648 ACAAAACAAGCGGGCATGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGGC
583 ACGAAAC--G-AGGC----GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCC
* * *
16494713 GTGGATCGATGGGGTGGTAGATGGGTTTAGGCGCATCTTCATATTTCT-CCATGCCAATGCCATT
641 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACC-TGCCAATGCCATT
* * *
16494777 TTTATGGCTTGCAAATTCATGCAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
705 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * ** * *
16494842 CTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCA
770 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCA
* *
16494907 GAAGGATTTTTGG-CCACAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGGACAA
835 GAAGGAGTTTTGGCCCA-AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
16494968 AAAAATTCAGCTAAAAACTCAAAGTGTACTAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
16495033 TCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
16495098 AGTTCTCGAGGTTTGATGAGGCATAGGAGGCCAATATAAGGGCCGAGTACCAGCACCCATCGCAC
131 AGTTCTCGAGGTTTGATGAGGGATAGG-GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
16495163 ATCATGTGCGCACACCCCTCCCTCGATCCCCCCGATCGCCGGAACCCCAATGCTGTCGGTTAGGT
195 ATCATGTGCGCACA-CCC-CCC-CGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * *
16495228 TCTTCGACGATGCTTCGACGATGGTGCCCCGACAAAGAAAAATGCGACACCAGCACATTCCCGAG
257 TCTTCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
** * ** * * *
16495293 CCCAAAATGTGCTGCCATAACCCTCGGTCTGGTTCGATCTTAAACTGAGAATGAACTCCGTATGC
322 CCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
16495358 TTAGACTGGGAGTGAACTCCGTATGCCAAAGTCAACCGATGAAACGAGCGAGCGGGCGCTCATCC
387 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGAGCGGGCGCTCAGCC
* * * *
16495423 GGCCAGAAGGGCAGGATGCGTAAGCCGGGAATCAGTCGGGTCCCCATCTACGTACTGCCAATCC-
452 GGCCAG-AGGGCAGGATGCGTAAGCCGGGGATCGGCCGGGTCCCCATCTACGTGCTGCCAATCCT
* * * * **
16495487 AATATCGCAACCCTCAGTCCGATCCAATCTTAGA-TAGGAAATGAACTCCATATGCCTAAGCCAA
516 ACTACCGCAACCCTCAGTCCGATCCGATCTTAGACT-GGGAATGAACTCTGTATGCCTAAGCCAA
* *
16495551 CCGATGAAACGA-GCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCACAAGCCGTGG
580 CCGACGAAACGAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGG
* *
16495615 ACCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCTGCCAATGCCATTTTTTT
645 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCTGCCAATGCCATTTTTAT
*
16495680 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGT
710 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG-
* ** * *
16495745 TTTTCTATTTTTCACAATTTTTGAAACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTCAGAAG
774 TTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAG
* *
16495810 GAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGG-ATGCACAA
839 GAGTTTTGGCCCAAAACTTGGTAGACATGATCCTTGTA-TTTTTGTTGGCATGCACAA
* * *
16495867 AAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGATCATTTGAAAAAACTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
16495932 TCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
16495997 AGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
131 AGTTCTCGAGGTTTGATGAGGGAT-AGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
16496062 ATCATGTGCGCACA-CCCCCCGGCACCCCTGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCT
195 ATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * **
16496126 TCGGCGATGCTCCGGA-GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAAATG-CCAAGTT
260 TCGACGATGCTCC-GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * *
16496189 CAGAATGTGCTGTCGTAACCCTCGGT-TCGGTCCAATCTTAGATTGGGAATGAACTCCGTATGCT
324 CAGCATGTGCTGTCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * * ** *
16496253 TAGATTGGGAATGAACTCCATATGCCAAAGTCAACCCACGAAATGAGCGTGCGGTTGCTCAGCCA
388 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGAGCGGGCGCTCAGCCG
* * * **
16496318 GCCAGAGGGC-GAGATGC-TCAAGCCAGGGATTGGACGGGT-CCCACTCTGTGTGCTGCCGAA-C
453 GCCAGAGGGCAG-GATGCGT-AAGCCGGGGATCGGCCGGGTCCCCA-TCTACGTGCTGCC-AATC
* * ** * * * * *
16496379 CTGCTGCTACAGCCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
514 CTACTACCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
* * * *
16496444 AACGACGAAACGA-----GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCAGTG
579 ACCGACGAAACGAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTG
* * *
16496504 GATCGATAGGGTGGTTGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
644 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCTGCCAATGCCATTTTTA
* * *
16496569 TGGCATGTAAGTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCG
709 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
16496634 TTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-GAAA
774 TTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG-AA
*
16496698 GGAGTTTTGGCACC-AAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAA
838 GGAGTTTTGGC-CCAAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
* ** * *
16496756 AAAATTTCATTTAAAAACTCGTAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
16496821 TTAGACACTTTAATGGCTACTGGCAGCAAACCTGTCAAATCTCAAATGCTCTTTAAGGGGGTGTG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
16496886 AGTTCTCGAGCTTTGATGAGGGATAGGGGGCCACTACAAGGGCCAAGTACCAGCACCCATCGCAC
131 AGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * **
16496951 ATCATGTGCGTACACCCCCCCG-GCCCACCGATTGCCGGAACCCCAATGCCAACGGTCAGG----
195 ATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
16497011 T------T-CTCCGACGA---T-----G-CG--G-----T-----ACCAGCACATGCCCGAGCCC
260 TCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * *
16497048 AGCATGTGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGAGAATGAACTTCGTATGCTTA
325 AGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * *
16497113 GACTTGGAATGCACTCCGTATGCCTAAGTCAA-CCACAAAACGAGCGTA-CGGGCGCTCAGCCGT
390 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG-AGCGGGCGCTCAGCCGG
* * * * **
16497176 CCAGAGGGGATGGATGCATAAGCCGGGGATTGGTCGGGTCACCC-TCT-CGATGCTGCTGATCCT
454 CCAGAGGGCA-GGATGCGTAAGCCGGGGATCGGCCGGGTC-CCCATCTACG-TGCTGCCAATCCT
* * * * *
16497239 GCTGCCGCAACCCTCAGTCC-AGTCTGATCTTCGATTGGGAATGAACTCTGTATGCCTAAGCCAA
516 ACTACCGCAACCCTCAGTCCGA-TCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
* * * * * *
16497303 CTGATGAAACGAGCGGGCGGTGGGCGGGCGGGCACTATGCCAGCCAGAGAGGCGGGATACACAAG
580 CCGACGAAACGA---GGC---GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAG
* * * *
16497368 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTGCATGCTAATGCCAT
639 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCTGCCAATGCCAT
*
16497433 TTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
704 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* ** *
16497498 ACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTTGGGATTTTTTAAAA-TTTTTC
769 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * *
16497562 AGAAGGACTTTCGGCCCCAAACTTGGTAGA-AGTGATCCTTGTATTTTTGTTGGCATGCAC-A
834 AGAAGGAGTTTTGGCCCAAAACTTGGTAGACA-TGATCCTTGTATTTTTGTTGGCATGCACAA
*
16497623 AAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
16497688 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
66 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
16497753 AGTTCTTGAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTATCGGCACCCATCGTAC
131 AGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
16497818 ATCATGTGCGCACAACCCCCCCG-CCCCCCCGATCGTCGGAACCCCAATGCCGTCGATCAGGTTC
195 ATCATGTGCGCAC-ACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * ** *
16497882 -TCCAGTGATGCTCCGACGATGGTGCCTCGGTGAAGAAAAATGCGGCACCCGCACATGCCCGAGC
259 TTCGA-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * *
16497946 CCAGCATGTACTGCCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACT-CGTATGCT
323 CCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* ** *
16498010 TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAATAGCGTA-CGGGTGCTCAGCC
388 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG-AGCGGGCGCTCAGCC
* * * * *
16498074 GGCCAGAGTGGCAGGATGCGCAAGTCGGGGATCGGCCGCGTCCCCCTCTGCGTGCTGCCAATCCT
452 GGCCAGAG-GGCAGGATGCGTAAGCCGGGGATCGGCCGGGTCCCCATCTACGTGCTGCCAATCCT
** * * *
16498139 ACTACCATAACCCTCAGTTCGGTCAGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAAC
516 ACTACCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAAC
*
16498204 CGACGAAACGAAAGTGCGGGCGTGCGGGC
581 CGACGAAACG--AG-GCGGGCGGGCGGGC
16498233 GAGCACTACG
Statistics
Matches: 2834, Mismatches: 336, Indels: 194
0.84 0.10 0.06
Matches are distributed among these distances:
857 44 0.02
858 186 0.07
859 2 0.00
860 3 0.00
862 1 0.00
867 197 0.07
868 96 0.03
869 212 0.07
870 1 0.00
871 1 0.00
875 1 0.00
877 2 0.00
878 7 0.00
879 10 0.00
882 1 0.00
885 1 0.00
887 1 0.00
888 13 0.00
889 319 0.11
890 176 0.06
892 6 0.00
893 38 0.01
894 178 0.06
895 87 0.03
896 5 0.00
897 13 0.00
898 163 0.06
899 336 0.12
900 214 0.08
901 119 0.04
902 83 0.03
904 3 0.00
905 4 0.00
906 111 0.04
907 198 0.07
908 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (895 bp):
AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
AGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
TCATGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTT
CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
GCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGAGCGGGCGCTCAGCCGGCC
AGAGGGCAGGATGCGTAAGCCGGGGATCGGCCGGGTCCCCATCTACGTGCTGCCAATCCTACTAC
CGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACG
AAACGAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCTGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTT
GGCCCAAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
Found at i:16496261 original size:26 final size:26
Alignment explanation
Indices: 16496225--16496277 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16496215 TCGGTCCAAT
*
16496225 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCATATG
16496251 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGATTGGGAATGAACTCCATATG
16496277 C
1 C
16496278 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCATATG
Found at i:16497122 original size:26 final size:26
Alignment explanation
Indices: 16497083--16497135 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16497073 CCGGTCTGAT
*
16497083 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
16497109 CTTAGACTTG-GAATGCACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
16497135 C
1 C
16497136 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:16498017 original size:25 final size:26
Alignment explanation
Indices: 16497983--16498034 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
16497973 CTGATCCGAT
16497983 CTTAGACTGGGAATGAACTC-GTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16498008 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16498034 C
1 C
16498035 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 20 0.77
26 6 0.23
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16500600 original size:26 final size:26
Alignment explanation
Indices: 16500571--16500623 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16500561 CCGGTCCGAT
16500571 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
16500597 CTTAGTTTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16500623 C
1 C
16500624 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16501197 original size:890 final size:885
Alignment explanation
Indices: 16498248--16503107 Score: 5882
Period size: 890 Copynumber: 5.5 Consensus size: 885
16498238 CTACGGGCAC
* * *
16498248 TAGGCACATCTTCATATTTCTACCTGCCAATGCCATTTTTATGGCTTGTAAATTCCTACAATCGT
1 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
16498313 CCCTTAAGCCTTCACATTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATATTCGA
66 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGA
* ** * * *
16498378 AACTTTTTACAGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCTAAACTTCGTAG
131 AACTTTTTACGGTTCAGGATTTTTTAAAATTTTTT-TGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
16498443 ACGTGATCCTTGTATTTTTCTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAG
195 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
16498508 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTCTAATGGCTACTGGCAACAAACC
260 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * *
16498573 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTATCGAGGTTTGATGAGGGATAGGGGGCT
325 TGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
16498638 AATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCGCCCCCGAT
390 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC-CCCCCGAT
* *
16498703 CGTCGGAACCCCAATGCCACCGGTCAGGTTCTCGGGCGATGCTCCGGCGATGGTGCCCCGACGAA
454 CGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC---C-A---T--GGCGATGGTGCCCCGACGAA
* ** * * *
16498768 GAAAAATGCGGCACCAGCACATGCCTTAGCCCAGCATGTGCTGCCGTAA--CT--T---TCAATC
510 GAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGTCGGTCGATC
*
16498826 ----C-GG--T----TTG-AT--TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
575 TTAACTGGAATGAACTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
* * * **
16498877 AACGAGCGTCCGAGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTC
640 AACGAGCGTACGGGTGCTCAGCCGG-CAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * ** * * **
16498942 TCCCTCGGTGTGCTGCCGATCCTGCTGCCACAATCCTCAGTCCAGTCCGATCTTAGACTAAGAAT
704 CCCCTCTGTGTGCTGCCGATCCTGCTGCTGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAAT
* * * * * *
16499007 GAACTTCGTATGCCTAAGCCAACCGATGAAAGGAGTGGGC-AGGTAGGCGGGCGGGCACTACGTC
769 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGA-GCAGGCGGGCGGGCACTACATC
* *
16499071 GGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATA-GGTGGTAGGTGGGTG
833 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
16499123 TAGGCACATATTCATATTTCTACATGCTAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
1 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
16499188 CCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGATGACTC-ATTTCTATTTTTCACGATTTTTGA
66 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGA
* ** *
16499252 AACTTTTTACGGTTCATGATTTTTTAAAACTTTTTCGGAATGAGTTTTGGCCCCAAACTTGG-AG
131 AACTTTTTACGGTTCAGGATTTTTTAAAA-TTTTTTTGAAGGAGTTTTGGCCCCAAACTTGGTAG
*
16499316 ATGTGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
195 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * ** *
16499380 ATTTTGTGATCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGTTTATTGGCAGCAAACC
260 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * * * *
16499445 TGTAAAATCTCAAATGCTTTTTAAGGGGGTATGAGCTCTCCAGGTTTGATGAGGGATAGGGGGTC
325 TGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* ** * * ** *
16499510 AATATAAGGGCCAAGTACCAGCACCCATTGCATTTGATGTGCGTACACCCTTCGGCCCCCCTGTT
390 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-GAT
* * *
16499575 CGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTTCGGCGATGGTCCCCCGACGAA
454 CGCCGGAACCCCAATGCCGCCGGTCAGGTTCT-C--C-A----T-GGCGATGGTGCCCCGACGAA
* * * * *
16499640 GAAAAATGCGACCCCAGCACATGCCCAAGCCCAGCATGTGCTG-TCGCAA----C--C-ATC-A-
510 GAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCT-GCAACCCTCGTCGGTCGAT
* * *
16499695 -GT--CTGG--T---C-CG-AT-ATTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATG
574 CTTAACTGGAATGAACTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATG
* * * **
16499749 AAATGAGCGTACGGGCGCTCAGCCAGCCAGAGGGGC-GAGATGCGCAAGCCAAGGATCGGTCGGG
639 AAACGAGCGTACGGGTGCTCAGCC-GGCAGAGGGGCAG-GATGCGCAAGCCGGGGATCGGTCGGG
* * * *
16499813 TCCCCCTCTGCGTGCTGTCGATCCTGCTG-TCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGG
702 TCCCCCTCTGTGTGCTGCCGATCCTGCTGCT-GCAACCCTCAGTCCGGTCCGATCTTAGACTGGG
* * * * * * *
16499877 AATGAACTCCGTATGCCTAAGCCAACTGACAAAACGAGCTGGCGAACGGGCGAGCGGG-ACTACG
766 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCAGGCGGGCGGGCACTACA
* *
16499941 TCGGCCAGAAAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
831 TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
**
16499996 TAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
1 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
16500061 CCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTCTCTATATTTCACGATTTTTGA
66 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGA
* * * * **
16500126 AACTGTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAATGAGTTTTGGCCGCAAACTTGACAG
131 AACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTT-GAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * * * *
16500191 ACGTGATCCGTGTAATTTTATTGGCATGCCCAAAAAAAGTCAGCTAAAAACTCGAACTGTACAAG
195 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
16500256 ATTTTGTGACCATTTGAAAAACGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACC
260 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
16500321 TGTAAAATCTCAAATGCTCTTTAAATGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
325 TGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * *
16500386 AATATAAGGGCCAAGTACCAGCACCCATCACAAATCATGTGTGCACACCCCCCGGCCCCCCTATC
390 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATC
* ** *
16500451 GCCGGAACCCCAGTGCCGCCGGTCAGGTTCT-C-TGGCGATGGTGCCCCGACGAAGAAAAAAACA
455 GCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCATGGCGATGGTGCCCCGACGAAGAAAAATGCG
* *
16500514 GCACCAACAGATGCCCGAGCCCAGCATGTGTTGCTGCAACCCTCAGTCCGGTCCGATCTTAGACT
520 GCACCAACACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTC-GT-CGGT-CGATCTTA-ACT
**
16500579 GGGAATGAACTCCGTATGCTTAGTTTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
581 -GGAATGAACT-CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
* * * * *
16500644 AGCATGCGGGTGCTCAACCGGGCAGAGGGGCAGGATGCGCAAGCTGGGGATTGGTCGGGTCCCCC
644 AGCGTACGGGTGCTCAGCC-GGCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCC
* * * * * *
16500709 TCTGCGTGCTACCGATCATGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAAC
708 TCTGTGTGCTGCCGATCCTGCTGCTGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAAC
* * * * * *
16500774 TCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGAGCAGGCGGGTGGGCATTATACCGGCCA
773 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCAGGCGGGCGGGCACTACATCGGCCA
16500839 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
838 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
16500887 TAGGCACATCTCCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
1 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
16500952 CCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGCTTTT-TATTTTTCACGATTTTCA
66 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG-TTTTCTATTTTTCACGATTTTCG
* ** *
16501016 AAACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTGTGAAGGAGTTTTGGCATCAAACTTGGTG
130 AAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTT-TGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
16501081 GACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTTAGCTAAAAACTCGAACTGCACAA
194 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
16501145 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTGATGGCTACTGGCAGCAAAC
259 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
16501210 CTGTAAAATCTCAATTGCTCTTT-AAGGGGATGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
324 CTGTAAAATCTCAAATGCTCTTTAAAGGGG-TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
16501274 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
388 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCG
*** * * * * **
16501339 ATCATTGGAACCCCAACGCCACCGGTCAGGTTCTCCGACAATGCTCCGGCATGGTGCCTCGGTGA
452 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT-C--C-ATG--GC-G-ATGGTGCCCCGACGA
* * * * * * *
16501404 AGAAAAATGTGGCACCAACACATGTCCGAGCCCTGTATGTTCTACTGTAACCCTCGATCCGGTCC
509 AGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCG-T-CGGT-C
16501469 GATCTTAAACTTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
571 GATCTT-AAC-TGGAATGAACT-CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
** * * *
16501534 CCCATGAAACGAGCGTGTGGGTGCTCAACCGGCTAGAGGGGCTGGATACGCAAGCCGGGGATCGG
633 CCCATGAAACGAGCGTACGGGTGCTCAGCCGGC-AGAGGGGCAGGATGCGCAAGCCGGGGATCGG
* * *
16501599 -CTGGGTCACCCC-CTGTGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGATCCAATCTTAG
697 TC-GGGTC-CCCCTCTGTGTGCTGCCGATCCTGCTGCTGCAACCCTCAGTCCGGTCCGATCTTAG
* * * * * *
16501662 ACTGGGAATGAACTCCATATACCTAAGCCAACCAACGAAACGAGCGGGCGGGCAGACGTGCGGGC
760 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCAGGCGGGCGGGC
* * * ***
16501727 ACTA-AGTCGGCTAGAGAGACGGGATACGGAAGCCGT-GATCGATAAACTGGTAGGTGGGTT
825 ACTACA-TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * *
16501787 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTACGACTTGTAAATTCACAAAATGGT
1 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * * **
16501852 CCCTTAAGCCTTCATGTGAAGTATCATGGCAAGATGACTCGTTTTATATTTTTCATAATTTTCGA
66 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGA
* * *
16501917 AAC-TCTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTCG-CCC---C-------
131 AACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTT-GAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
16501970 A----A-------ATTTTTGTTGGCATGCATAAAAAAATTAAGCTCAAAACTAGAAGTGTACAAG
195 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
16502024 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACC
260 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
16502089 TGTAAAATCTCAAATGCTCTTT-AAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
325 TGTAAAATCTCAAATGCTCTTTAAAGG-GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
16502153 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGCCCCCCGAT
389 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGAT
* * * * *
16502218 CGCCGGAACCCCAAGGCCGTCGGTCAGGTTCTCCGGTGATCCTCCGACGATAGTGCCCCGGCGAA
454 CGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC----A---T--GGCGATGGTGCCCCGACGAA
** * *
16502283 GAAAAATATGGCACCAACACATGCCCGAGCCCAGCATCTGCTGCTGCAACCCTTGGTTCGGTTTC
510 GAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCTGCAACCC-TCG-TCGG--TC
*
16502348 GTATGCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTC
571 G-AT-CTTA-ACT-GGAATGAAC-TCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
*
16502413 AACCCACGAAACGAGCGTACGGGTGCTCAGCCGGCTAGAGGGGCAGGATGCGCAAGCCGGGGATC
631 AACCCATGAAACGAGCGTACGGGTGCTCAGCCGGC-AGAGGGGCAGGATGCGCAAGCCGGGGATC
* * * * * *
16502478 GATCGGGTCCCCTTCTATGTGCTGCCAATCCTGCTGCTGCAACCCTCAATCCGGTCTGATCTTAG
695 GGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCTGCAACCCTCAGTCCGGTCCGATCTTAG
* * * *
16502543 ACTGGGAATGAACTACGTATGCCTAAGCTAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGC
760 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCAGGCGGGCGGGC
* * **
16502608 ACTATACCGGCCAGAGAGACGGGATAAGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
825 ACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
16502669 CAGGCACATCTTCATATTTTTGA-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
1 TAGGCACATCTTCATATTTCT-ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
16502733 TCCCTTAAGCCTTCATGTGAAGTTTCAT-GCAAAGACAACTCGTTTTCTATTTTTCACTATTTTT
65 TCCCTTAAGCCTTCACGTGAAGTTTCATGGC-AAGACGACTCGTTTTCTATTTTTCACGATTTTC
* * * * * *
16502797 GAAACTTTTTGCAGTTCAAGATTTTTTAAAATGTTTTTCGAATGAGTTTTAGCCCCAAACTTGGT
129 GAAACTTTTTACGGTTCAGGATTTTTTAAAAT-TTTTTTGAAGGAGTTTTGGCCCCAAACTTGGT
* * **
16502862 AGACCTGATCCTTGTATTTTTTTTGGTGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
193 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
16502927 AGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAAGGGTTACTGGCAGCAAA
258 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
16502992 CCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT--GGGG
323 CCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
16503055 CCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCA-GTGCGCACACCCCC
388 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
16503108 GCCCTCCGAT
Statistics
Matches: 3461, Mismatches: 400, Indels: 221
0.85 0.10 0.05
Matches are distributed among these distances:
864 57 0.02
865 2 0.00
868 1 0.00
871 8 0.00
872 360 0.10
873 325 0.09
874 143 0.04
875 147 0.04
876 215 0.06
877 54 0.02
878 264 0.08
879 8 0.00
880 12 0.00
881 253 0.07
882 140 0.04
883 36 0.01
884 9 0.00
886 1 0.00
887 1 0.00
888 3 0.00
889 7 0.00
890 396 0.11
891 288 0.08
892 4 0.00
894 1 0.00
895 2 0.00
897 2 0.00
898 3 0.00
899 45 0.01
900 143 0.04
901 309 0.09
902 20 0.01
903 41 0.01
905 157 0.05
906 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (885 bp):
TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGA
AACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCG
CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCATGGCGATGGTGCCCCGACGAAGAAAAATGCGG
CACCAACACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGTCGGTCGATCTTAACTGGAAT
GAACTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTAC
GGGTGCTCAGCCGGCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTG
CTGCCGATCCTGCTGCTGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
CCTAAGCCAACCGACGAAACGAGCGGGCGAGCAGGCGGGCGGGCACTACATCGGCCAGAGAGACG
GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
Found at i:16501501 original size:26 final size:26
Alignment explanation
Indices: 16501472--16501524 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16501462 CCGGTCCGAT
*
16501472 CTTAAACTTGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
16501498 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
16501524 C
1 C
16501525 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:16502374 original size:26 final size:26
Alignment explanation
Indices: 16502345--16502403 Score: 109
Period size: 26 Copynumber: 2.3 Consensus size: 26
16502335 TTGGTTCGGT
16502345 TTCGTATGCTTAGACTGGGAATGAAC
1 TTCGTATGCTTAGACTGGGAATGAAC
16502371 TTCGTATGCTTAGACTGGGAATGAAC
1 TTCGTATGCTTAGACTGGGAATGAAC
*
16502397 TCCGTAT
1 TTCGTAT
16502404 ACCTAAGTCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
TTCGTATGCTTAGACTGGGAATGAAC
Found at i:16505783 original size:433 final size:432
Alignment explanation
Indices: 16504978--16505839 Score: 1232
Period size: 433 Copynumber: 2.0 Consensus size: 432
16504968 AGGGACCATT
* *
16504978 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
1 GTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCA
** *
16505043 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGC
66 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAACCGACGTAGTGCCCGCCCGC
*
16505108 CTACCCGCCCACTCGTTTCATCGGTTGGCTCAGGCATACGGAGTTCATACCAAGTCTAAGATAGG
131 CTACCCGCCCACTCGGTTCATCGGTTGGCTCAGGCATACGGAGTTCATACCAAGTCTAAGATAGG
* * *
16505173 ACTGGACTGAGGCTTGCAGCAGCAGGATTGACAGCACGTAGAGGTGGACCCGATCGATCCCCGGC
196 ACTAGACTGAGGCTTGCAGCAGCAGGATCGACAGCACGCAGAGGTGGACCCGATCGATCCCCGGC
* * * * *
16505238 TTGCGCATCCTGCCCCTCTGGCCGACTGAGCACCCGCGCGCTCGTTTCGTGTGTTGACTTAGGCA
261 TTACGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
* * *
16505303 TATGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACTTGC-TGGGCT
326 TACGAAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTTGGG-T
* *
16505367 CGGGCATGTGTTGGTGCCATATTTTTCTTCGCCAGGGCACGTA
390 CGGGCATGTGTTGGTACCACATTTTTCTTCGCCAGGGCACGTA
* *
16505410 GTATGAATTTAAAAGCCGTAAAAGTGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCA
1 GTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCA
* * * *
16505475 CCTACCACCCTATCGATTCCACGGCTTGCGCTTCTCGTCTCTCTAACCGGCGTAGTGCCTGCCCG
66 CCTACCACCCTATCGA-TCCACGGCTTGCGCATCCCGTCTCTCTAACCGACGTAGTGCCCGCCCG
* * ** * * * *
16505540 CCTGCCCGCTCGTTTGGTTCATCGGTTTGCTCAGGCATATGGAGTTCATTCCCAA-TCTAAGATC
130 CCTACCCGCCCACTCGGTTCATCGGTTGGCTCAGGCATACGGAGTTCA-TACCAAGTCTAAGAT-
* * ** *
16505604 A-GACTAGA-TCGAGGGTTGCAGTAGCAGGATCGGTAGCACGCAGA-GTGTGACCCGGTCGATCC
193 AGGACTAGACT-GAGGCTTGCAGCAGCAGGATCGACAGCACGCAGAGGTG-GACCCGATCGATCC
* * *
16505666 TCGGCTTACGCATCCCGCCCCTCTGGTCGACTGAGCACCCGCACGTTCATTTCGTGGGTTGACTT
256 CCGGCTTACGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTT
* *
16505731 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGG-TCGAGGGTTGCGGCAGCACATGCT
321 AGGCATACGAAGTTCATTCCCAGTCTAAGATCGGA-CAGGACCGAGGGTTGCGGCAGCACATGCT
16505795 TGGGTCGGGCATGTGTTGGTACCACATTTTTCTTCGCCAGGGCAC
385 TGGGTCGGGCATGTGTTGGTACCACATTTTTCTTCGCCAGGGCAC
16505840 CATCGTCGGA
Statistics
Matches: 380, Mismatches: 43, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
432 81 0.21
433 286 0.75
434 13 0.03
ACGTcount: A:0.21, C:0.28, G:0.26, T:0.24
Consensus pattern (432 bp):
GTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAACCGACGTAGTGCCCGCCCGC
CTACCCGCCCACTCGGTTCATCGGTTGGCTCAGGCATACGGAGTTCATACCAAGTCTAAGATAGG
ACTAGACTGAGGCTTGCAGCAGCAGGATCGACAGCACGCAGAGGTGGACCCGATCGATCCCCGGC
TTACGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
TACGAAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCACATGCTTGGGTC
GGGCATGTGTTGGTACCACATTTTTCTTCGCCAGGGCACGTA
Found at i:16506666 original size:26 final size:26
Alignment explanation
Indices: 16506615--16506667 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16506605 TTTGACTTAG
* *
16506615 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
*
16506641 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
16506667 G
1 G
16506668 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAACCTAA
Found at i:16507324 original size:4 final size:4
Alignment explanation
Indices: 16507315--16507339 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
16507305 CCGATGTCGT
16507315 GCCC GCCC GCCC GCCC GCCC GCCC G
1 GCCC GCCC GCCC GCCC GCCC GCCC G
16507340 TCCACTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.72, G:0.28, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:16507552 original size:26 final size:26
Alignment explanation
Indices: 16507516--16507566 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16507506 GTTGACTTAG
*
16507516 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16507542 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
16507567 GGATCAGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16508197 original size:903 final size:897
Alignment explanation
Indices: 16505733--16508439 Score: 3756
Period size: 906 Copynumber: 3.0 Consensus size: 897
16505723 GTTGACTTAG
* *
16505733 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAG-GTCGAGGGTTGCGGCAGCACATGCTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-GAGGGTTGCGGCAGCACATGC-TG
* *
16505797 GG-TCGGGCATGTGTTGGTACCACATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGTCGGA
64 GGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGA
* * * * *
16505861 GAACCTGACCGACGGCATTAGGGTTCCGGTGATCGAGGGGCCGGAGGGGGTGTGCGCACATGATG
129 GAACCTGACCGACGGCATTGGGGTTCC-GCGATCGGGGGGCCGG-GGGGTTGTACG-ACATGATG
*
16505926 TGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTC
191 TGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* *
16505991 ACACCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
16506056 ATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * **
16506121 TATGCATGCCAAAAAAAATACAAGGATCATGCCTACCAAGTTCGGGGCCGAAACTCCTTTTGAAA
386 TATGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
16506186 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAACAATCGTAAAAAATAGAAAACGAGTCGTC
451 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCGTC
* *
16506251 TTGCCATGAAAATTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
16506316 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGATTTG
581 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
** * *
16506381 TGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCACCCG--CTCGTTTCGT
646 TGCATCCCGTCTCTC-GGCCGATGTCGTGCCCGCCCGCCCGCCCGCCCGCCCGCCCTCGTTTCGT
* *
16506444 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTGTGGTA
710 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCCGACCGAAGGTTGTGGTA
* * * * * *
16506509 GTAGGATCGACAGCACGCAGAGGGGGGCCCAGCGGATCCCCGGCTTGCGTATCCCATCTCTTTGG
775 GCAGGATCGACAGCACGTAGAGGGGGACCCATC-GATCCCCGGCTTGCGCATCCC-GC-C-----
** * * * *
16506574 TCGGCTGAGCACCCGCACACTTGTTTCGTGGTTTGACTTAGGCATATGGAGTTCATTCCCAATCT
832 -CCTCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCT
16506639 AA
896 AA
* * * *
16506641 GCATACGGAGTTCATTCCCAGCCTAAGATTGGACCAGACCGAGGTTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCACATGCTGGG
* * *
16506706 CTTGGGCATGTGTTGGGGCCACATTTTTCTTCGTCGGGGCACCATCG-CTGGAGCATCGTCGGAG
66 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTC-GGAGCATCGTCGGAG
* * * * *
16506770 AACCTGATCGACGACATTGGGGTTCCGACGATCGGGTGGTCGGGGGGTGTGCAC-ACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCG-CGATCGGGGGGCCGGGGGGT-TGTACGACATGATGTG
* *
16506834 CGATGGGTGCTAGTACTTGGCCCTTATACTAGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
193 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
*
16506899 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
16506964 GGGGACACTATTTTCAAATGGTCACAAAATCGTGTACACTTCGAGTTTATAGCTAAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* * * *
16507029 TGCATGCCAAAAAAAATACAAAGATCACGTTTACCAAGTTTGGGGCCAAGACTCCTTCCGAAAAA
388 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
16507094 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCGTCTT
*
16507159 GCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * * * *
16507224 TTGGCACACAAAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATTGATCCATGGCTTGTG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGTG
* *
16507289 CATCCCGTCTCTCCGGCCGATGTCGTGCCCGCCCGCCCGCCCGCCCGCCCGTCCACTCATTTCAT
648 CATCCCGTCTCT-CGGCCGATGTCGTGCCCGCCCGCCCGCCCGCCCGCCCG-CC-CTCGTTTCGT
* * * * *
16507354 CGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTCAGATCAGACCCGATCGAGGGTTGTGATA
710 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCCGACCGAAGGTTGTGGTA
*
16507419 GCAGGATCGACAGCACGTAAAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTG-
775 GCAGGATCGACAGCACGTAGAGGGGGACCC-ATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGA
* * *
16507483 GCACTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
* * * * * *
16507542 GCATACAGAGTTCATTCCCAGTCTAGGATCAGACCAGACTGAGGGTTGCGACAGCACATACCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
16507607 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGTATCATCAGAGA
66 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
*
16507672 ACCTGACCGACGGCATTGGGGTTCCAGCGATTGGGGGGCCCAGGGGGGTTGTACGTACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCC-GCGATCGGGGGG-CC-GGGGGGTTGTACG-ACATGATGT
* * *
16507737 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTCTCCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* *
16507802 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCCGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
16507867 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
16507932 TTGCATGCCAAAAAAAACACAAGGATCATGTGTA-CAAGTTTGGGGCTAAAACTCCTTCCAAAAA
387 ATGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * ** *
16507996 AATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAATAAGTCGTAT
452 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCGTCT
*
16508061 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
16508126 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGACTTGC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGT
* * **** * * *
16508191 GCATCCCGTCTCT----C-TTATCG-G-CATAACGCCTGCCGGCCCGGCCG--CTCGTTTCGTCG
647 GCATCCCGTCTCTCGGCCGATGTCGTGCCCGCCCGCCCGCCCGCCCGCCCGCCCTCGTTTCGTCG
* * *
16508247 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCCGACCGACGGTTGTGGCAGC
712 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCCGACCGAAGGTTGTGGTAGC
* * * * *
16508312 AAGATCGATAGCACGTAGAGGGGGACCCAGTCAATCCTCGGCTTGCGCATCCTGCCCCTTTGGCC
777 AGGATCGACAGCACGTAGAGGGGGACCCA-TCGATCCCCGGCTTGCGCATCCCGCCCC--T----
* *
16508377 GACTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTTGGCATATGGAGTTCATTCCCAGTCT
835 --CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCT
16508440 CAGATCAGAT
Statistics
Matches: 1596, Mismatches: 176, Indels: 62
0.87 0.10 0.03
Matches are distributed among these distances:
890 1 0.00
891 118 0.07
893 1 0.00
895 16 0.01
896 1 0.00
897 4 0.00
898 1 0.00
899 3 0.00
900 52 0.03
901 194 0.12
902 11 0.01
903 225 0.14
904 221 0.14
906 474 0.30
907 11 0.01
908 148 0.09
909 1 0.00
910 112 0.07
911 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGCGATCGGGGGGCCGGGGGGTTGTACGACATGATGTGCGA
TGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
ATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGTGCAT
CCCGTCTCTCGGCCGATGTCGTGCCCGCCCGCCCGCCCGCCCGCCCGCCCTCGTTTCGTCGGTTG
GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCCGACCGAAGGTTGTGGTAGCAGGA
TCGACAGCACGTAGAGGGGGACCCATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGAGCACCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
Found at i:16509254 original size:793 final size:793
Alignment explanation
Indices: 16507728--16509279 Score: 2584
Period size: 793 Copynumber: 2.0 Consensus size: 793
16507718 GGTTGTACGT
* * *
16507728 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTCTCCCTCATCAAACCTC
1 ACATGATGTGCGACGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
16507793 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAG
66 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAG
*
16507858 TGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
131 TGTCCAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* ** * * *
16507923 AATTTTTTTTTGCATGCCAAAAAAAACACAAGGATCATGTGTACAAGTTTGGGGCTAAAACTCCT
196 AATTTTTTTGTGCATGCCAAAAAAAACACAAGGATCACATCTACAACTTTGGGGCCAAAACTCCT
* *
16507988 TCCAAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAATA
261 TCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATA
* **
16508053 AGTCGTATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATA
326 AGTCATATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGAAATA
* *
16508118 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCA
391 AAAATGGAACTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCA
* * * *
16508183 CGACTTGCGCATCCCGTCTCTCTTATCGGCATAACGCCTGCCGGCCCGGCCGCTCGTTTCGTCGG
456 CGACTTGCGCATCCCATCTCTCTGACCGGCATAACGCCTACCGGCCCGGCCGCTCGTTTCGTCGG
* * *
16508248 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCCGACCGACGGTTGTGGCAGCA
521 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGACGGTTATGGCAACA
16508313 AGATCGATAGCACGTAGAGGGGGACCCAGTCAATCCTCGGCTTGCGCATCCTGCCCCTTTGGCCG
586 AGATCGATAGCACGTAGAGGGGGACCCAGTCAATCCTCGGCTTGCGCATCCTGCCCCTTTGGCCG
* *
16508378 ACTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTTGGCATATGGAGTTCATTCCCAGTCTCAG
651 ACTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTCGGCATATGGAGTTCATTCCCAGTCTAAG
* *
16508443 ATCAGATCGAACCGAGGGTTATGGCAGCACATGCTGGGCTCGGGTTCCGATGATTGTGGGGCCGG
716 ATCAGACCGAACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGTTCCGATGATTGTGGGGCCGG
16508508 AGGGGGTGTGCGC
781 AGGGGGTGTGCGC
*
16508521 ACATGATGTGCGACGGGCGCTGGTGCTTGGCCCTTAT-TTGGCCCCCTATCCCTCATCAAACCTC
1 ACATGATGTGCGACGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
16508585 GAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
66 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAG
**
16508650 TGTGTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
131 TGTCCAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * *
16508715 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACTATCTTTGGGGCCAAAACTCG
196 AATTTTTTTGTGCATGCCAAAAAAAACACAAGGATCACATCTAC-AACTTTGGGGCCAAAACTCC
* * **
16508780 TTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAT
260 TTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAT
*** * * *
16508845 GCTTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGAAAT
325 AAGTCATATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGAAAT
* *
16508910 AAAAATGGAACTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
390 AAAAATGGAACTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCC
* * * *
16508975 ACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGCGCCTACCGGCCCGGCCGCTCGTTTCGTCG
455 ACGACTTGCGCATCCCATCTCTCTGACCGGCATAACGCCTACCGGCCCGGCCGCTCGTTTCGTCG
*
16509040 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTATGGCAAC
520 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGACGGTTATGGCAAC
* *
16509105 AGGATCGATAGCACGTAGAGGGGGACCCAGTCAATCCTCGGCTTGCGCATCCTGCCCCTTTGGCT
585 AAGATCGATAGCACGTAGAGGGGGACCCAGTCAATCCTCGGCTTGCGCATCCTGCCCCTTTGGCC
16509170 GACTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTCGGCATATGGAGTTCATTCCCAGTCTAA
650 GACTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTCGGCATATGGAGTTCATTCCCAGTCTAA
16509235 GATCAGACCGAACCGAGGGTTACGGCAGCACATGCTGGGCTCGGG
715 GATCAGACCGAACCGAGGGTTACGGCAGCACATGCTGGGCTCGGG
16509280 CATGTGTTGG
Statistics
Matches: 702, Mismatches: 56, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
792 189 0.27
793 513 0.73
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (793 bp):
ACATGATGTGCGACGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAG
TGTCCAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
AATTTTTTTGTGCATGCCAAAAAAAACACAAGGATCACATCTACAACTTTGGGGCCAAAACTCCT
TCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATA
AGTCATATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGAAATA
AAAATGGAACTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCA
CGACTTGCGCATCCCATCTCTCTGACCGGCATAACGCCTACCGGCCCGGCCGCTCGTTTCGTCGG
TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGACGGTTATGGCAACA
AGATCGATAGCACGTAGAGGGGGACCCAGTCAATCCTCGGCTTGCGCATCCTGCCCCTTTGGCCG
ACTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTCGGCATATGGAGTTCATTCCCAGTCTAAG
ATCAGACCGAACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGTTCCGATGATTGTGGGGCCGG
AGGGGGTGTGCGC
Found at i:16510609 original size:26 final size:26
Alignment explanation
Indices: 16510559--16510611 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16510549 GTTGACTTTG
* **
16510559 GCATATGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16510585 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16510611 G
1 G
16510612 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16511762 original size:901 final size:898
Alignment explanation
Indices: 16509971--16511870 Score: 2875
Period size: 901 Copynumber: 2.1 Consensus size: 898
16509961 GGACTAAGGG
*
16509971 TTAC-GGTTTGCTGCCAGTAACTCTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
1 TTACAGGTTTGCTGCCAGTAACCCTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
16510035 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATC
66 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATC
* * *
16510100 ACGTCTACCACGTTTGGGGCCAAAACGCCTTCCGAAAAAATTTTAAAAAAACCCGAACCGTAAAA
131 ACGTCTACAACGTTTGGGGCCAAAACGCATTCCGAAAAAATTTTAAAAAAACCCAAACCGTAAAA
*
16510165 AGTTTCAAAAATCATGAAAAATAGAAAATGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCTTA
196 ACTTTCAAAAATCATGAAAAATAGAAAATGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* * *
16510230 AAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAGGATGTG
261 AAGGACCATTGTATGAATTTACAAGACATAAAAATGGAATTGGCACATAGAAATATGAAGATGTG
*
16510295 CCTAAACCCACCTACCACCCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
326 CCTAAACCCACCTACCACCCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
* * * * ** **
16510360 TGCCTGCCGGCTCGACCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCGTTCCCAGTCTA
391 TGCCCGCCGACCCGACCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTAATTCCCAGTCTA
* * * **
16510425 AGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGTAGAGGGGGACCCAGTCGAT
456 AGATCAGACCAGACCGAGGGTTGCGGCAACAGGATCGACAGCACACAGAGGGGGACCCAGTCGAT
* * * * *
16510490 CCCCGGCTTGCGCATCCTGCCCCTTTGGCCAACTGAGCACCCACACGCTCGTTTTGTGGGTTGAC
521 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCAACTGAGCACCCACACGCTCATTTCGTGGGTTAAC
* * * *
16510555 TTTGGCATATGGAGTTCATTCCCGGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACC
586 TTAGGCATACGGAGTTCATTCCCGATCTAAGCATACGGAGTTCACTCCCAATCTAAGATCAGACC
* * * *
16510620 GAACCGAGGGTTACGACAGCACATGCTGGGCTTGGGCATGTGTTGGTGCTGTATTTTTCTTCACC
651 GAACCGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCTGCATTTCTCTTCACC
** *
16510685 GAGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGACGACATTGGGGTTCCCGTGATCGGG
716 GAGGCACCATCACCGGAGCATCGCCAGAGAACCTGACCGACGACATTGGGGTTCCCGCGATCGGG
* *
16510750 GGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
781 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCC
*
16510815 TATCCCTCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTGAGATT
846 TATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATT
16510868 TTACAGGTTTGCTGCCAGTAACCCTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
1 TTACAGGTTTGCTGCCAGTAACCCTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
16510933 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
66 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAATACAAGGAT
* * * *
16510998 CACGTCTACAATGTTTGGGGCCAAAACTCATTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAA
130 CACGTCTACAACGTTTGGGGCCAAAACGCATTCCGAAAAAATTTTAAAAAAACCCAAACCGTAAA
** * ** *
16511063 AACTTTTGAAAATCATGAAAAATAGTAAATGCTTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
195 AACTTTCAAAAATCATGAAAAATAGAAAATGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * **
16511128 AAGGGACCATTGTATGAATTTACATGA-ACTAAAAATGGAATTGGCATGTAGAAATATGAAGATG
260 AAAGGACCATTGTATGAATTTACAAGACA-TAAAAATGGAATTGGCACATAGAAATATGAAGATG
*
16511192 TGCCTAAACCCACCTATCA-CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
324 TGCCTAAACCCACCTACCACCCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
*
16511256 AGTGCCCGACCGCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTAATTCCCA
389 AGTGCCCG-CCG--ACCCGACCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTAATTCCCA
* * *
16511321 GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAATAGGATCGACAGCACACAGAGGGGGAGCCGG
451 GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAACAGGATCGACAGCACACAGAGGGGGACCCAG
* * * * * *
16511386 TCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCTAGCTGAGCGCCCGCACGTTCATTTCGTGGG
516 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAACTGAGCACCCACACGCTCATTTCGTGGG
* * *
16511451 TTAACTTAGGCATACGTAGTTCATT-TCGAATCTAAGCATACGGAGTTCACTCCCAGTCTAAGAT
581 TTAACTTAGGCATACGGAGTTCATTCCCG-ATCTAAGCATACGGAGTTCACTCCCAATCTAAGAT
* ** *
16511515 CAGACC-AGATCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTG-TCGCATTTC
645 CAGACCGA-ACCGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCT-GCATTTC
* * ** *
16511578 TCTTCGCC-AGGGCACCATCACCGGAGCATCGCCGGAGAACCTGATTGGCGACATTGGGGTT-CC
708 TCTTCACCGA-GGCACCATCACCGGAGCATCGCCAGAGAACCTGACCGACGACATTGGGGTTCCC
16511641 GACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTA
772 G-CGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTA
16511706 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-TTAGAA-AGCATTTGAGATT
835 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTA-AAGAGCATTTGAGATT
* * * *
16511769 TTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCACATGGTCAC
1 TTACAGGTTTGCTGCCAGTAACCCTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
*
16511834 AAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTT
66 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
16511871 ATGAAAAATA
Statistics
Matches: 907, Mismatches: 83, Indels: 22
0.90 0.08 0.02
Matches are distributed among these distances:
897 4 0.00
898 159 0.18
899 208 0.23
900 8 0.01
901 428 0.47
902 100 0.11
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
TTACAGGTTTGCTGCCAGTAACCCTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATC
ACGTCTACAACGTTTGGGGCCAAAACGCATTCCGAAAAAATTTTAAAAAAACCCAAACCGTAAAA
ACTTTCAAAAATCATGAAAAATAGAAAATGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCTTA
AAGGACCATTGTATGAATTTACAAGACATAAAAATGGAATTGGCACATAGAAATATGAAGATGTG
CCTAAACCCACCTACCACCCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
TGCCCGCCGACCCGACCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTAATTCCCAGTCTA
AGATCAGACCAGACCGAGGGTTGCGGCAACAGGATCGACAGCACACAGAGGGGGACCCAGTCGAT
CCCCGGCTTGCGCATCCCGCCCCTCTGGCCAACTGAGCACCCACACGCTCATTTCGTGGGTTAAC
TTAGGCATACGGAGTTCATTCCCGATCTAAGCATACGGAGTTCACTCCCAATCTAAGATCAGACC
GAACCGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCTGCATTTCTCTTCACC
GAGGCACCATCACCGGAGCATCGCCAGAGAACCTGACCGACGACATTGGGGTTCCCGCGATCGGG
GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCC
TATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATT
Found at i:16512283 original size:26 final size:26
Alignment explanation
Indices: 16512247--16512299 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16512237 GTTGACTTAG
16512247 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16512273 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16512299 G
1 G
16512300 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16512823 original size:790 final size:779
Alignment explanation
Indices: 16511077--16513424 Score: 3201
Period size: 787 Copynumber: 3.0 Consensus size: 779
16511067 TTTGAAAATC
* * ** *
16511077 ATGAAAAATAGTAAATGCTTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
1 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTA
* * * **
16511142 TGAATTTACATGAAC-TAAAAATGGAATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACC
66 TGAATTTACAAG-CCGTAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACC
* *
16511206 TATCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGACCGCCA
130 TACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C--CCG---
* * *
16511271 CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTAATTCCCAGTCTAAGATCAGACC
188 CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
** * * *
16511336 AGACCGAGGGTTGCGGCAATAGGATCGACAGCACACAGAGGGGGAGCCGGTCGATCCTCGGCTTG
253 AGACCGAGGGTTGC-GCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTG
* * * *
16511401 CGCATCCCGCCCCTCTGGCTAGCTGAGCGCCCGCACGTTCATTTCGTGGGTTAACTTAGGCATAC
317 CGCATCCCACCCCTCTGGCGA-CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
* * * * *
16511466 GTAGTTCATTTCGAATCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCAGACCAGA-TCGAGG
381 GGAGTTCATTCCCAGTCTAAGCATA-GGAGTTCA-TCCCAGTCTAAGATCA-ACCGGACT-GAGG
* * *
16511530 GTTGTGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGTCGCATTTCTCTTCGCCAGGGCACCA
442 GTTGTGGCAGCACATGCTGGGCTCG-GCATGTGTTGGTGCCGCATTTTTCTTCGTCAGGGCACCA
** * * *
16511595 TCACCGGAGCATCGCCGGAGAACCTGATTGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGG
506 TCGTCGGAGCATCG-CGGAGAACCTGA-TGGCGGCATTGGGGTTTCGGCGATC-GGGGGGCCGGG
*
16511660 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTC
568 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
16511725 ATCAAACCTCGAGAACTCACA-CCCCTTAGAA-AGCATTTGAGATTTTATAGGTTTGCTGCCAGT
633 ATCAAACCTCGAGAACTCACACCCCCTTA-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
16511788 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCACATGGTCACAAAATCTTGTACACTTCCA
697 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
16511853 GTTTTTAGCTGAATTTTT
762 GTTTTTAGCTGAATTTTT
16511871 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTA
1 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTA
16511936 TGAATTTACACA-CCGTAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACC
66 TGAATTTACA-AGCCGTAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACC
* *
16512000 TACCATCCC-ATCGATCCACGTCTTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
130 TACCA-CCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * *
16512064 CGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATCGGACCGGATCG
194 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
* * * * * *
16512129 AGGGTTGCTGCAGCAAGATCGACAGCACGTAAAGGGGGACCCGACCGATCCCCGACTTGCGCATC
259 AGGGTTGC-GCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATC
* * *
16512194 CCACCCCTCTGGTCGACTGTGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
323 CCACCCCTCTGG-CGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTT
* *
16512259 CATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTGCGA
387 CATTCCCAGTCTAAGCATA-GGAGTTCA-TCCCAGTCTAAGATC-AACCGGACTGAGGGTTGTGG
* * *
16512324 CAGCACATGCTGGGCTCAGGCATGCGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGTCGG
449 CAGCACATGCTGGGCTC-GGCATGTGTTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGTCGG
*
16512389 AGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTTCGGTGATCAGGGGGGCCGGGGGGTGGT
513 AGCATCG-CGGAGAACCTGA-TGGCGGCATTGGGGTTTCGGCGATC-GGGGGGCC--GGGG-GGT
*
16512454 GTGCGC-CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCA
572 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
16512518 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
637 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
16512583 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
702 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
16512648 TAGCTGAATTTTT
767 TAGCTGAATTTTT
*
16512661 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTA
1 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTA
16512726 TGAATTTACAAGCCGTAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCT
66 TGAATTTACAAGCCGTAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCT
* ** * *
16512791 ACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTTTACCCGGCATAGTGCCCGCCCGCCCG
131 ACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCG
* * * * * *
16512856 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATGCGAAGTTCATTCCTAGTCTAAGATTGAACCAGAC
192 CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * * * * *
16512921 CGAGGGTTACGACAGC-GGATTGGCAGCACGCAGAGTGGGACCTGGCCGATCCTTGGCTTACGCA
257 CGAGGGTTGCG-CAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCA
** * ** *
16512985 TCCCACCCCTCTGGCCGGTTGAGTGCCTTCACACTCATTTCGTGGGTTGACTTAGGCATACGGAG
321 TCCCACCCCTCTGG-CGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAG
* *
16513050 TTCATTCCCAG--T---C-TA--AG--------A-TC--AG----ACCGAACTGAGGGTTGTGGT
385 TTCATTCCCAGTCTAAGCATAGGAGTTCATCCCAGTCTAAGATCAACCGGACTGAGGGTTGTGGC
* * * *
16513092 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTTAGGGCACCATCGTCAGA
450 AGCACATGCTGGGCTC-GGCATGTGTTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGTCGGA
* *
16513157 GCATCGCTAGAGAACCTGATCGGTGGCATTGGGGTTTCGGCGATCGGGGGGCCGGGGGGTGTGCG
514 GCATCGC-GGAGAACCTGAT-GGCGGCATTGGGGTTTCGGCGATCGGGGGGCCGGGGGGTGTGCG
16513222 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
577 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
16513287 CGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
642 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
16513352 GTGTCTGAAATGGGGACACTTTTTTCAAACGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCT
707 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
16513417 GAATTTTT
772 GAATTTTT
16513425 TTGTGCATGC
Statistics
Matches: 1402, Mismatches: 130, Indels: 74
0.87 0.08 0.05
Matches are distributed among these distances:
763 9 0.01
764 200 0.14
766 10 0.01
767 111 0.08
772 2 0.00
774 2 0.00
775 1 0.00
784 2 0.00
787 329 0.23
788 6 0.00
789 82 0.06
790 299 0.21
791 1 0.00
792 1 0.00
793 104 0.07
794 240 0.17
795 3 0.00
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (779 bp):
ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTA
TGAATTTACAAGCCGTAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCT
ACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAG
GGTTGCGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCA
CCCCTCTGGCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
CCCAGTCTAAGCATAGGAGTTCATCCCAGTCTAAGATCAACCGGACTGAGGGTTGTGGCAGCACA
TGCTGGGCTCGGCATGTGTTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCGC
GGAGAACCTGATGGCGGCATTGGGGTTTCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
Found at i:16513943 original size:26 final size:26
Alignment explanation
Indices: 16513907--16513959 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16513897 GTTGACATAG
*
16513907 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
16513933 GCATATGGAGTTCATTGCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16513959 G
1 G
16513960 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16514827 original size:26 final size:26
Alignment explanation
Indices: 16514797--16514846 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16514787 GTTGACTTAG
*
16514797 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16514823 GCATACGAAGTTCATTCCCAGTCT
1 GCATACGAAGTTCATTCCCAGTCT
16514847 GAGATCAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16515762 original size:25 final size:26
Alignment explanation
Indices: 16515711--16515762 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16515701 GTTGACTTAG
16515711 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16515737 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16515762 G
1 G
16515763 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16515849 original size:902 final size:894
Alignment explanation
Indices: 16513040--16516622 Score: 4737
Period size: 893 Copynumber: 4.0 Consensus size: 894
16513030 GTTGACTTAG
* * ** **
16513040 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* * * *
16513105 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGT-TAGGGCACCATCGTCAGAGCATCGCTAGAG
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGA-GGCACCATCGTCAGAGCATCGCCAGAG
* ** * * *
16513169 AACCTGATCGGTGGCATTGGGGTTTCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGT
*
16513234 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
16513299 CCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
* *
16513364 GGGACACTTTTTTCAAACGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * *
16513429 GCATGCGAAGAAAAATACAACGATCAGGTTTACCAAGTTTGGGGCC-AAACTCCTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAA
* ** * *
16513493 TTTTAAAAAATCCCGAACCGCAAAATGTTTGGAAAATCATGAAAACTAGAAAATGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
16513558 CCATGAAACTTCACGTGAAGGCTTAAGGGATCTTTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * * * *
16513623 TGGCACATAGAATTATGAAGATGTGCCTAAACCCACCTAGCACGCTATCGATCTACAGCTTATGC
585 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGC
* * * *
16513688 ATCCCGTCTCTCTGGTCGGCGTAGTGGCCGCCCACCCACTCGTTTCATCGGTT-GTCTTAGGCAT
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACTCGTTTCATCAGTTGGT-TTAGGCAT
* * *
16513752 ACGGAGTTCATTCCCAGTCTAAGATCAGACCTG-ACCGAGGGTTGTAGCAGCAGGAACGGCAGCA
714 ACGGAGTTCATTCCCAGTCTAAGATCAGATC-GAACCGAGGGTTGCAGCAGCAGGATCGGCAGCA
* * ** *
16513816 CGCAGAGGGGGACCCGACCGATCCCCAGTTTACGCATCCCGCCCCTCTGGCCGGCTGAGTGCCTG
778 CGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCACCCG
*
16513881 CACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAA
843 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
16513933 GCATATGGAGTTCATTGCCAATCTAAGATCGGACCGGACCAAGGGTTGCG-CTAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGAC-AGCACATGCTGG
* * ** * * * *
16513997 ACTCAGGCATGTGCTGGTGCCGTATTTTTCTTCCCCGGGGCACCATCGTAAGAGCATCGTCGGAG
65 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCAGAGCATCGCCAGAG
* ** ** * * *
16514062 AACCTGACCGACAGTGTTACGGTTCCGACGATTGGGGGGTCGGGGGGGCTGTGCGCACATAATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGG-TGTGCGCACATGATGT
16514127 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
193 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * * *
16514192 CACCCCCTTAAATAGCATTCGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
* *
16514257 TAGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
16514321 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAATTTTGGGGCCAAAACTTCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAA
* * *
16514386 AA-TTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
16514450 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
16514515 ATTGGCACATAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
583 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
* * * *
16514580 GCATCCCGTCTCTCTGGCAGGCGTAGTTCCCGCCCG----CTCGTTTCGTCGGTTGGTTTAGGCA
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACTCGTTTCATCAGTTGGTTTAGGCA
* * * * * *
16514641 TACGGAGTTCATTCCCAATCTAAGATCGGA-CCAGACCGAGGGTTACAGCAGCAGGATTGGCACC
713 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGA-ACCGAGGGTTGCAGCAGCAGGATCGGCAGC
* * ** * * *
16514705 ACGCAAAGGGGGACTCGGTCGATCCCCGGCTTGCGCAACCCGCCCCTCTGGCCGGTTGAGCACCC
777 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
*
16514770 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
16514823 GCATACGAAGTTCATTCCCAGTCTGAGATCAGATCGGACCGAGGGTTACGACAGCACGTGCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCT-GG
* *
16514888 G-TCAGGCATGTGTTGGTGCCGGATTTTTCTTCGTCGAGGCACCATCGCTGGAGCATCGTCGGAG
65 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCG-T----CA------GAG
16514952 CATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGAGGGGGTGTGCG
119 CATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCG-GGGGGTGTGCG
* *
16515017 CACATGATGTGTGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAATCCT
183 CACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
16515082 CAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCTATTAAA
248 CAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
16515147 GTGTCTAAAATGGGGACTCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
313 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
16515212 GAATCTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTA
378 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTA
* *
16515277 CTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
443 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* * *
16515342 CGAGTCATCTTGCCATGATAA-TTCACATGATGGCTTAAGGGACCATTGTATGAATTTACAAGCC
508 CGAGTCGTCTTGCCATGA-AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
16515406 ATAAGAATGGCATTGGCACACAGAAATATGGAGATGTGCCTAAACCCACCTACCACCTTATCGAT
572 ATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* *
16515471 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGTCGTAGTGCCCGCCCGCCTGCCAGCCTGTTCGTT
637 CCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-C--CCA--C---TCGTT
** ** **
16515536 TTGTCAGTTGGTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGAAAAGAGGGTTGC
694 TCATCAGTTGGTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGC
* * * * * * ** *
16515601 GGTAGTAGGATCGACAGCACGCAGAGGGGGACCAGACCGATCCTCGGCTTACGCATCTTGTCCCT
759 AGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCT
* * * *** * *
16515666 CAGGTCGACTGAATGCCTGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCA
824 CTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
16515731 GTCTAA
889 GTCTAA
* * *
16515737 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGA-TGAAAGGTTACGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG-AGGGTTACGACAGCACATGCTGG
* * * * **
16515800 GCTCGGGCTTGT-ATCGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCATCAGA
65 GCTCAGGCATGTGCT-GGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCAGAGCATCGCCAGA
16515864 GAACCTGACC-ATCGGCATTGGGGTTCCGACGAT--------CGGGGGGTGTGCGCACATGATGT
129 GAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGT
* *
16515920 GTGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * * *
16515985 CACCCCCGTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAATTGTCTAAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
* * *
16516050 TGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAATTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ***
16516115 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGAATAAAAC-ACCTTCCGAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTA-CTTCCGAAA
* *
16516179 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
16516244 CTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAGTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
16516309 CATTGGCATGCAGAAATATGAAGATGTGACC-AAACCCACCAACCACCCTATTGATCCACGACTT
582 CATTGGCACACAGAAATATGAAGATGTG-CCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * ** * *
16516373 GCGCATCCTGTCTCCCTGGCCAACGTAGTGCCCGCCCGCCCACTCGTTTCATCAGTTGGCTAAGG
646 ACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACTCGTTTCATCAGTTGGTTTAGG
* * * * *
16516438 CATATGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGC-GACAGCAAGATCGCCA
711 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCAG-CAGCAGGATCGGCA
* * *
16516502 GCACGTC-GAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCG-CCCTCTGGTCGGCTGAGCA
775 GCACG-CAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCA
* ** * *
16516565 CCCGTACGCTCACTTCGTGGGTTGACTTAGTTC-TACAGAGTTCATTCCCTAGTCTAA
839 CCCGCACGCTCGTTTCGTGGGTTGACTTAG-GCATACGGAGTTCATTCCC-AGTCTAA
16516622 G
1 G
16516623 ATCAGACCGG
Statistics
Matches: 2363, Mismatches: 278, Indels: 106
0.86 0.10 0.04
Matches are distributed among these distances:
884 55 0.02
885 114 0.05
886 1 0.00
888 1 0.00
889 1 0.00
890 271 0.11
891 5 0.00
892 4 0.00
893 599 0.25
894 264 0.11
895 212 0.09
900 194 0.08
901 120 0.05
902 251 0.11
903 2 0.00
908 1 0.00
911 1 0.00
912 5 0.00
913 77 0.03
914 183 0.08
915 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCAGAGCATCGCCAGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGTG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACTCGTTTCATCAGTTGGTTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGC
AGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16518526 original size:913 final size:901
Alignment explanation
Indices: 16516639--16518887 Score: 3176
Period size: 913 Copynumber: 2.5 Consensus size: 901
16516629 CCGGACTGAG
* * * * *
16516639 GGCATGTGCTGGTGCCGCATTTTTTTTCGTCGGGGCACCACCATCGTAGCATCGCCGGAGAACCT
1 GGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCT
* **
16516704 GACTGACGGCATT-GGGTTCCGACGATCGGGGGGGCC-GGGGGGTGCACGCACATGATGTGCGAT
66 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC-CACATGATGTGCGAT
* *
16516767 GGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAATCCTCGAGAACTCACACCC
130 GGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
16516832 CATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
195 CATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
16516897 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCA
260 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
16516962 TGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCC-ATCCAAAAATTTT
325 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAATCCTTTCGAAAAAATTT
* * * * * * *
16517026 TTAAAAATTCAGATCCGTAAAAAGTTTGGAAAATCGTAAAAAATAAAAAACGAGTCGTCTTGCCA
389 TAAAAAATCCAGAACCGCAAAAAGTTT-GAAAATCGTGAAAAATAGAAAACGAATCGTCTTGCCA
*
16517091 TGAAACTTCACGTGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
453 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
16517156 CATGCAGAAATAAGGAGATTTGCCTAAACCCAACTACCACTCTATCGATCCACGGCTTACGCATC
518 CAAGCAGAAATAAGAAGATGTGCCTAAACCCAACTACCACTCTATCGATCCACGGCTTACGCATC
* * * * *
16517221 CCGTCTCTCTGGCCTGTGTAGTGCCCGCCTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
583 CCGTCTCTCTGGCCGGCGTAGTACCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* *
16517286 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACTGAGGGTTACGGCAGCAGGATCGATA
648 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACCGAGGGTTACGACAGCAGGATCGATA
* * * * *
16517351 GCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCAAGCCGGTTGAGCGC
713 GCACATAGAGGGCGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCAAGCCGGCTAAGCAC
* * * *
16517416 CCGTACGCTCATTTCGTGGGTTGACTTAGGCATGCAGAGTTCATTCCCAGTCTAAGCATATGGAG
778 CCGTACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCCAAGCATACGGAG
* *** * ** * *
16517481 TTCATTCCCACTCTAAGATCGGATTGGACCGAGAGTTGCGGCAGCAGATGCTGGGCTCG
843 TTCATTCCCACTCTAAGACCGGACCAGACCGAAAGTTGCAACAGCACATGCTGGGCTCA
* * * *
16517540 GGCATGTGCTGGTGCTGTATTTTTCTTCATCGGGGCACCATCACCGGAGCATCACCAGAGAACCT
1 GGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCT
*
16517605 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGCGGGTGTGCTCACAAGATGTGCGA
66 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGGTGTGC-CACATGATGTGCGA
* * *
16517670 TGGGTGCTGCTACTTAGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTAC-CC
129 TGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
16517734 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
194 CCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * **
16517799 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAATGTTTTTGCAC
259 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
16517864 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GTCTGCAAAACTCCTTTCGAAAAAAT
324 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGC--CAAAAATCCTTTCGAAAAAAT
* *
16517928 TTTAAAAAATCCAGAACTGCAAAAAGTTTCATAAATCGTGAAAAATAGAAAACGAATCGTCTTGC
387 TTTAAAAAATCCAGAACCGCAAAAAGTTTGA-AAATCGTGAAAAATAGAAAACGAATCGTCTTGC
**
16517993 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATGAGCCATAAAAATGGCATT
451 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
16518058 GGCAAGCATAAATATGAAGATGTGCCTAAACCCACCTACCAC-CATATCGATCCACGGCTTACGC
516 GGCAAGCAGAAATAAGAAGATGTGCCTAAACCCAACTACCACTC-TATCGATCCACGGCTTACGC
*
16518122 ATCCCGTCTCTCTGGCCGGCGTAGTACCCACCCGCCCGCCCGCCCGTTCGCCCCGCTCGTTTCTT
580 ATCCCGTCTCTCTGGCCGGCGTAGT----ACCCGCCCGCCCG-CC---CG-CCCGCTCGTTTCGT
*** *
16518187 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGTTTCAGACCGAGGGTTACGACA
636 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACCGAGGGTTACGACA
* * **
16518252 GCAGGATCGGTAGCACATAGAGGGCGACTCGGTCGATCC-CTGGCTTGCGCATCCCGCCCCT-AT
701 GCAGGATCGATAGCACATAGAGGGCGACCCGACCGATCCTC-GGCTTGCGCATCCCGCCCCTCA-
* * * *
16518315 GGCCGGCTAAGCACCCGTACGCTCATTTCATGGGTTTACTTTGGCATACGGAGTTCATTCCCAGT
764 AGCCGGCTAAGCACCCGTACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
* * * *
16518380 CCAAGCGTGCGGAGTTCATTCCCAGTCTAAGACCGGACCAGACTGAAAGTTGCAACAGCACATGC
829 CCAAGCATACGGAGTTCATTCCCACTCTAAGACCGGACCAGACCGAAAGTTGCAACAGCACATGC
16518445 TGGGCTCA
894 TGGGCTCA
* * ** * *
16518453 GGCATGTGCTGGTGATGCATTTTTCTTCGTCAGGGCACCATTGCCGGAGCATCGTCGGAAAACCT
1 GGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCT
* * * * * * *
16518518 GACCGACGGTATTGGGGTTTCGACGATC-GAGGGGCAGGTGGTGTGTG-CACATGATGTCCGATG
66 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCCACATGATGTGCGATG
* *
16518581 GGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAAAACTCACACCCC
131 GGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
16518645 TTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGA
196 ATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
16518710 CACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTATTTTGTGCA
261 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTTGTGCA
*
16518774 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTCCGAAAAAA-TT
325 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAATCCTTTCGAAAAAATTT
*
16518838 TAAAAAATCTC-GAACCGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAA
389 TAAAAAATC-CAGAACCGCAAAAAG-TTTGAAAATCGTGAAAAATAGAAAA
16518888 TGAGTCATCG
Statistics
Matches: 1193, Mismatches: 130, Indels: 43
0.87 0.10 0.03
Matches are distributed among these distances:
901 70 0.06
902 23 0.02
903 175 0.15
904 279 0.23
908 85 0.07
909 220 0.18
911 8 0.01
912 13 0.01
913 320 0.27
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (901 bp):
GGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCT
GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
ATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAATCCTTTCGAAAAAATTTTA
AAAAATCCAGAACCGCAAAAAGTTTGAAAATCGTGAAAAATAGAAAACGAATCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAA
GCAGAAATAAGAAGATGTGCCTAAACCCAACTACCACTCTATCGATCCACGGCTTACGCATCCCG
TCTCTCTGGCCGGCGTAGTACCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACCGAGGGTTACGACAGCAGGATCGATAGCA
CATAGAGGGCGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCAAGCCGGCTAAGCACCCG
TACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCCAAGCATACGGAGTTC
ATTCCCACTCTAAGACCGGACCAGACCGAAAGTTGCAACAGCACATGCTGGGCTCA
Found at i:16519651 original size:26 final size:26
Alignment explanation
Indices: 16519615--16519667 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16519605 GTTGACTTAC
*
16519615 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
16519641 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
16519667 G
1 G
16519668 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:16520130 original size:850 final size:845
Alignment explanation
Indices: 16518924--16521894 Score: 3964
Period size: 880 Copynumber: 3.4 Consensus size: 845
16518914 AGAGCATCGT
* * * *
16518924 CGGAGAACCTGACCGTCGGCATTGGGGTTCCGACGAT------CGGGGGGTGTGCGCACATGATG
1 CGGAGAACCTGACCGGCGACATTGGGGTTCCGACCATGGGGGACGAGGGGTGTGCGCACATGATG
* *
16518983 TGTGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
66 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
*
16519048 ACACCCCCGTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGT-TCTGAA
131 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAA
* *
16519112 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTAAACTTCGAGTTTTTGGCTGAATTTTTT
196 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
16519177 TGTGCGTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTATAGGGCCAAAACTCCTTCCAAAA
261 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTATGGGGCCAAAACTCCTTCCAAAA
* *
16519242 AAATTTTAGAAAATCCCGAACTGCAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
326 AAATTTTAAAAAATCCCGAACTGC-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
16519307 CTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATG
390 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
16519372 GCATTGGCACGCAGAAATATGAAGATGTTCCTAAA-GCACCTACCACCCTATCGATCCACGGCTT
455 GCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTT
* * * * * **
16519436 GCGCATCCCGTCTCTCTGGCCGGGCATAGTGCGTGCCCACCCTCTCGCCTGCTCATTTTATCGGT
520 GCACATCTCGTCTCTCTAGCC-GG--T-GT-AGTGCCCACCCACT---C-GCTCATTTCGTCGGT
* **
16519501 TGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATC-GAACTAGACTGAGGGTT-G-C-GA-C
576 TGGCTTAGGCATATGGAGTTCATTTCCAGTCTAAGATCAG-ACCGGACTGAGGGTTCGCCAGAGC
16519561 AGCACACAGAGGGGGA-C-CC-A-AC-G-G-AT-C-CT-C-GGCT-CG-TTTCGTGGGTTGACTT
640 AGCACACAGAGGGGGACCACCGACACTGCGCATCCTCTGCTGGCTCCGCTTTCGTGGGTTGACTT
* * * ** *
16519613 ACGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGATCAG
705 AGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAG
* * * * **
16519678 ACCGAGGGTTGCAGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGG
770 ACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGTTGATGCCGCATTTTTCTTCACCGG
16519743 GGCACCATCGTCGGAGCATCGC
835 GGCACCA---T-----CA---C
* * ** * *
16519765 CGGAGAACCTGATCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATG
1 CGGAGAACCTGACCGGCGACATTGGGGTTCCGACCAT---GGGGGACGAGGGGTGTGCGCACATG
* * **
16519830 ATGTGCAATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
63 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
*
16519895 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCAATTAAAGTGTCT
128 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCT
* *
16519960 GAAATGGGGGCACTTTTTCCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTGAATTT
193 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTGAATTT
* * * *
16520025 TTTTATACGTGCCAAAAAAAATACAAGGATCACGTCTACCATGTATGGGGCCAAAACTCCTTCCA
258 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTATGGGGCCAAAACTCCTTCCA
* * *
16520090 AAAAAATTTTAGAAAATCTCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTC
323 AAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
16520155 GTCTTGCCATGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
388 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
16520220 TGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGC
453 TGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGC
16520285 TTGCACATCTCGTCTCTCTAGCCGGTGTAGTGCCCACCCACTCGCTCATTTCGTCGGTTGGCTTA
518 TTGCACATCTCGTCTCTCTAGCCGGTGTAGTGCCCACCCACTCGCTCATTTCGTCGGTTGGCTTA
16520350 GGCATATGGAGTTCATTTCCAGTCTAAGATCAGACCGGACTGAGGGTTCCAGCACCAAGATTGGC
583 GGCATATGGAGTTCATTTCCAGTCTAAGATCAGACCGGACTGAGGGTT-C-G--CC-AGA---GC
16520415 AGCACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCCCCCTCTGGCTGGCTGAGCGC
640 AGCACACAGAGGGGGA-CC-ACCGA----C-AC-TGCGCAT-----CCTCT-GCTGGCT------
16520480 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAG
685 ---C-CG--C-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAG
16520545 TTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATG
743 TTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATG
16520610 TGTTGATGCCGCATTTTTCTTCACCGGGGCACCATCAC
808 TGTTGATGCCGCATTTTTCTTCACCGGGGCACCATCAC
*
16520648 CGGAGAACCTGACCGGCGACATTGGGGTTCCGGCCATCGGGGGACGAGGGGTGTGCGCACATGAT
1 CGGAGAACCTGACCGGCGACATTGGGGTTCCGACCAT-GGGGGACGAGGGGTGTGCGCACATGAT
*
16520713 GTGCGATGTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
65 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* * *
16520778 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAGGTGTCTGA
130 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGA
* * *
16520843 AATGGGGACACTTTTTTCAAATGTTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTT
195 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTGAATTTTT
** * * ** * ***
16520908 TT-TGCACACCAAAAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGATAAAAATCCTTTTGAA
260 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTATGGGGCCAAAACTCCTTCCAAA
**
16520972 AAAATTTTAAAAAATCCCGAACTATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
325 AAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
16521037 CTTGCCATGAAACTTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
390 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
16521102 GCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTT
455 GCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTT
16521167 GCACATCTCGTCTCTCTAGCCGGTGTAGTGCCCACCCACTCGCTCATTTCGTCGGTTGGCTTAGG
520 GCACATCTCGTCTCTCTAGCCGGTGTAGTGCCCACCCACTCGCTCATTTCGTCGGTTGGCTTAGG
*
16521232 CATATGGAGTTCATTTCCAGTCTAAGATCAGACCGGACTGAAGGTTCCAGCACCAAGATTGGCAG
585 CATATGGAGTTCATTTCCAGTCTAAGATCAGACCGGACTGAGGGTT-C-G--CC-AGA---GCAG
*
16521297 CACACAGAGGGGGACCCGACCGATCCCCGACTTGTGCATCCCCCCCTCTGGCTGGCTGAGCGCCC
642 CACACAGAGGGGGA-CC-ACCGA----C-AC-TGCGCAT-----CCTCT-GCTGGCT--------
16521362 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTT
685 -C-CG--C-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTT
16521427 CATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTG
745 CATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTG
16521492 TTGATGCCGCATTTTTCTTCACCGGGGCACCATCAC
810 TTGATGCCGCATTTTTCTTCACCGGGGCACCATCAC
*
16521528 CGGAGAACCTGACCGGCGACATTGGGGTTCCGGCCATAGGGGGACGAGGGGTGTGCGCACATGAT
1 CGGAGAACCTGACCGGCGACATTGGGGTTCCGACCAT-GGGGGACGAGGGGTGTGCGCACATGAT
*
16521593 GTGCGATGTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
65 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
*
16521658 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
130 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGA
* *
16521723 AATGGGGACAC-TTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
195 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTGAATTTTT
* * * **
16521787 TTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
260 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTATGGGGCCAAAACTCCTTCCAAA
* * ** * *
16521852 AAAAGTTTAAAAAATCCCAAACCACAGAATGTTTCAAAAATCG
325 AAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCG
16521895 CACCCCTCTG
Statistics
Matches: 1949, Mismatches: 116, Indels: 91
0.90 0.05 0.04
Matches are distributed among these distances:
841 34 0.02
842 63 0.03
843 2 0.00
845 1 0.00
846 12 0.01
847 2 0.00
848 2 0.00
850 274 0.14
851 196 0.10
854 17 0.01
856 1 0.00
858 2 0.00
859 1 0.00
865 2 0.00
867 1 0.00
868 1 0.00
869 2 0.00
875 1 0.00
876 2 0.00
878 1 0.00
879 56 0.03
880 889 0.46
881 208 0.11
883 33 0.02
886 2 0.00
890 2 0.00
891 1 0.00
894 141 0.07
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (845 bp):
CGGAGAACCTGACCGGCGACATTGGGGTTCCGACCATGGGGGACGAGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTGAATTTTTT
TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTATGGGGCCAAAACTCCTTCCAAAA
AAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTG
CACATCTCGTCTCTCTAGCCGGTGTAGTGCCCACCCACTCGCTCATTTCGTCGGTTGGCTTAGGC
ATATGGAGTTCATTTCCAGTCTAAGATCAGACCGGACTGAGGGTTCGCCAGAGCAGCACACAGAG
GGGGACCACCGACACTGCGCATCCTCTGCTGGCTCCGCTTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTG
CGGTAGCACATGCTGGGCTCGGGCATGTGTTGATGCCGCATTTTTCTTCACCGGGGCACCATCAC
Found at i:16520545 original size:26 final size:26
Alignment explanation
Indices: 16520509--16520561 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16520499 GTTGACTTAG
*
16520509 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16520535 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16520561 G
1 G
16520562 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16521425 original size:26 final size:26
Alignment explanation
Indices: 16521389--16521441 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16521379 GTTGACTTAG
*
16521389 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16521415 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16521441 G
1 G
16521442 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16523121 original size:26 final size:26
Alignment explanation
Indices: 16523085--16523137 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16523075 CTGGTCTGAT
16523085 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16523111 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16523137 C
1 C
16523138 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16524182 original size:892 final size:896
Alignment explanation
Indices: 16522362--16524837 Score: 3336
Period size: 892 Copynumber: 2.7 Consensus size: 896
16522352 GTCCGATCTG
* * *
16522362 ATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACTGATAAAATGAGCGGGCGGGCAGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGGCGGGCAGGCG
* * *
16522427 GGCGGGCATTACGTCAGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
66 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
16522492 GTTTAGGCACATCTTCATATTTCTATATATGCCAAATTCCATTTTTGTGGCTTGTAAATTCATAC
131 GTTTAGGCACATCTTCATATTTC--TATATGCC-AATGCCATTTTTATGGCTTGTAAATTCATAC
* *
16522557 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGAT
193 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-
* * * **
16522622 TTTTTAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCGGAACTAGTTTTGGCCCCAAACT
257 TTTTTGAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTAGG-AGGAGTTTTGGCCCCAAACT
* *
16522687 TGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCAAAAAAACATTTAGCTAAAAACCCAAAGTG
321 TGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCAAAAAAA-ATTCAGCTAAAAACTCAAAGTG
16522752 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAG
385 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAG
* * **
16522817 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCCCAAGGTTTGATGAGAGATGG
450 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAA
*
16522882 GGGGCCAATATAAGGACCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGACCC
515 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCC
* * *
16522946 TCTCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCC
580 CCCCGATCATCGGAACCCCAATGCTGTCGGTCAGGTTCTCC-ACGA-GCTCC---GATGGTGCCC
* * * * *
16523011 CGGCGAAGAAAAATATGGCCCCAGCACATGCCCAAGCCCAACATGTGCTACCGCAACCCTCGGTC
640 CGACGAAGAAAAATAGGGCACCAGCACATGCCCAAGCACAACATGTGCTACCGCAACCCTCGATC
* *
16523076 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTA
705 TGATCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTA
** * * * * *
16523141 AGTCAACCCATGGAACGAGCGTGCGGGCGCTTAGTCGGCCAAAGGGGTGGGATGAGCAAGCCGGG
770 AGTCAACCCATAAAACGAGCGTGCGGGCGCTCAGCCAGCCAAAGGGGCGGGATGAGCAAGCCGAG
* * * * * **
16523206 GGTCGATCGAGTCCCCCTCTGCATGCTATCAATCCGGCTACCACAACCCTCAATCTGGTTTG
835 GATCGATCGAGTCACCCTCTACATGCTATCAATCCGACTACCACAACCCTCAATCTGATTCA
* * * * * *
16523268 ATCCTAGACTGGGAGTGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGAGCGGGTG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGGCGGGCAGGCG
** * * * *
16523333 GGCGGGCACTACACCGGCCAAAGAGACGGGATGCGCAGGCCATGGATCGATAGGGTGGTAGGTTG
66 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
16523398 GTTTAGGCACATCTTCATATTTCTATGTGCCAGTGCCATTTGTATGGCTTGTAAATTCATACAAT
131 GTTTAGGCACATCTTCATATTTCTATATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
16523463 GGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATTTTACACGATTTT
196 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * *** * * **
16523528 TGAACTTGTTACGGATCAAAATTTTTTAAAAAATTTTTAGGAGGATTTTTCACCCCAAACTTGGT
261 TGAACTTTTTACGGTTCGGGATTTTTT-AAAATTTTTTAGGAGGAGTTTTGGCCCCAAACTTGGT
*
16523593 AGATGTGATCCTTGTATTTTT-TTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
325 AGACGTGATCCTTGTATTTTTCTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCAAAGTGTACA
* *
16523657 AGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAACAAA
389 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAA
* * * ** * *
16523722 CCTGCAAAATGTCAAATGCTCTTTAAGGCGGTGTGAGTTCTTGAGATTTGATGAGGGATAAGGGA
454 CCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGG
* * * *
16523787 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATATGTGCACACCCCCCCGGCCCCCCC
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-GACCCCCC
* * * * *
16523852 CGATCATCGGAGCCCCAATGCTGGT-TGTCAGTTTCT-C-CG-G-T-C-ATGGTGCCCTGATGAA
583 CGATCATCGGAACCCCAATGCT-GTCGGTCAGGTTCTCCACGAGCTCCGATGGTGCCCCGACGAA
* ** * * *
16523910 GAAAAATGGGGCACCAGCACATGCCTGAGCACAGCATGTGCTGCCGTAACCCTCGATCTGATCTG
647 GAAAAATAGGGCACCAGCACATGCCCAAGCACAACATGTGCTACCGCAACCCTCGATCTGATCTG
*
16523975 ATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAAC
712 ATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
* * * * *
16524040 CCATAAAATGAGCGTGCGGGCGCTCAGCCAGCTAGAGGGGCGGGATGCGCAAGTCGAGGATCGAT
777 CCATAAAACGAGCGTGCGGGCGCTCAGCCAGCCAAAGGGGCGGGATGAGCAAGCCGAGGATCGAT
* ** * * * *
16524105 CGGGTCACCCTCTATGTGCTATCGAT-CGTACTGCCGCAACCCTCAGTCTGATTCA
842 CGAGTCACCCTCTACATGCTATCAATCCG-ACTACCACAACCCTCAATCTGATTCA
* *
16524160 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAATGAGCGGGCGGGTAGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGGCGGGCAGGCG
* **
16524225 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTCATAGGTGG
66 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* ** **
16524290 GTTTAGGCACATCTTCATATTTCTACATGCCAATGATATTTTTATCACTTGTAAATTCATACAAT
131 GTTTAGGCACATCTTCATATTTCTATATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
16524355 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAGTTT
196 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * *
16524420 TGAAACTTTTTATGGTTCGGGATTTTTTACAATTTTTTTGGATGGAGTTTTGGCCCCAAACTTGG
261 TG-AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTAGGA-GGAGTTTTGGCCCCAAACTTGG
* * *
16524485 TAGACGTGATCTTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
324 TAGACGTGATCCTTGTATTTTTCTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCAAAGTGTAC
* *
16524550 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAA
388 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
* *
16524615 ACCTGTTAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGG
453 ACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGG
* * *
16524680 GCCAATATAAGGGCCAAGTACCAGCACCCAACGCACATCATGTGCGCACACCTACCCCGACCCCA
518 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCCGACCCCC
* * * * * *
16524745 CTGAT-AGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTCCGGCGATGGTGCCTC
582 CCGATCA-TCGGAACCCCAATGCTGTCGGTCAGGTTCTCC-ACGA-GCT-C--CGATGGTGCCCC
** * *
16524809 GGTGAAGAAAAATACGGTACCAGCACATG
641 GACGAAGAAAAATAGGGCACCAGCACATG
16524838 TTCGATAGGG
Statistics
Matches: 1360, Mismatches: 187, Indels: 47
0.85 0.12 0.03
Matches are distributed among these distances:
891 2 0.00
892 465 0.34
893 61 0.04
894 237 0.17
895 5 0.00
896 1 0.00
897 3 0.00
898 1 0.00
899 1 0.00
900 3 0.00
901 196 0.14
902 76 0.06
903 131 0.10
904 10 0.01
905 33 0.02
906 135 0.10
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (896 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGGCGGGCAGGCG
GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTATATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
TGAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTAGGAGGAGTTTTGGCCCCAAACTTGGTA
GACGTGATCCTTGTATTTTTCTTGGCATGCAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCGA
TCATCGGAACCCCAATGCTGTCGGTCAGGTTCTCCACGAGCTCCGATGGTGCCCCGACGAAGAAA
AATAGGGCACCAGCACATGCCCAAGCACAACATGTGCTACCGCAACCCTCGATCTGATCTGATCT
TAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAT
AAAACGAGCGTGCGGGCGCTCAGCCAGCCAAAGGGGCGGGATGAGCAAGCCGAGGATCGATCGAG
TCACCCTCTACATGCTATCAATCCGACTACCACAACCCTCAATCTGATTCA
Found at i:16525500 original size:26 final size:26
Alignment explanation
Indices: 16525448--16525500 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16525438 CCGGTCCAAT
*
16525448 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGAATG
16525474 CTTAGACTGGGAATGAACTAC-GAATG
1 CTTAGACTGGGAATGAACT-CTGAATG
16525500 C
1 C
16525501 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGAATG
Found at i:16526341 original size:26 final size:26
Alignment explanation
Indices: 16526305--16526357 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16526295 CCAATCCGAT
* *
16526305 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16526331 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16526357 C
1 C
16526358 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16527223 original size:26 final size:26
Alignment explanation
Indices: 16527194--16527246 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16527184 CTGGTCCGAT
16527194 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16527220 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16527246 C
1 C
16527247 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16527739 original size:885 final size:884
Alignment explanation
Indices: 16524839--16529082 Score: 5421
Period size: 894 Copynumber: 4.8 Consensus size: 884
16524829 CAGCACATGT
* *
16524839 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTTCCAATGCCATTTTTATG
1 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATG
* * *
16524904 GCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGACAACTCGTT
66 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* ** * *
16524969 TTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGA
131 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* * ** *
16525034 GTTTTGGGCCCAAACTTGGTAGACGTTATCCTTGTATTTTTGTTCACATGCACAAAAAAGTTCAG
196 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
16525099 CTAAAAACTCGAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTT
261 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTT
* * * * *
16525164 TAATGGCTGCTGGCAGCAAACATGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGACTTCTCGAG
326 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAG
* * *
16525229 GTTTGATGAGGGATAGGGGGTCGATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG
391 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * *
16525294 CACACCCCCCTGACCCCTTGATCGCCGGAACCCCAAT-ACAGCCGGTCAGGTTCTTCAGTGATGC
456 CACACCCCCCAGCCCCCTCGATCGTCGGAACCCCAATGAC-GCCGGTCAGG---TTC-----T-C
** * * * *
16525358 TCTGGCGATGGTGCCCCGGTGAAGAAAAATTCGGCACCAGCAGATGCCTGAG-CTCGGCATGTGC
511 -C-GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCT-AGCATGTGC
* *
16525422 TGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAA
573 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * *
16525487 TGAACTACGAATGCCTAAGTCAACCCACGAAACGAGTGTGCGAGCGCTCAGCCGACCAGAGGGGC
638 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGC
* * * * * * * * ** *
16525552 GGGATGCGTAAGCCGAGGATTGGCCAGGCCCCCCTCTGCGTGTTGTCGATCCTGCTATCGCATCC
703 GGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACC
* ** * *
16525617 CTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTAAGCTTAAGCCAACCGACGAAACGAG
768 CTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * * *** *
16525682 CGGACGGGC-GG-A--A-GT---AC-GAG-CACTACAT-CG---GCCAGAGAGA
833 CGGGCGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCC-GTG-GA
* * * * *
16525722 -CG---GGATGGTAGGTGTGTTTAGGGACATCTACATATTTTTGTGTGCCAATGCCATTTTTATG
1 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATG
*
16525783 GCTTGTAAATTCATACAATGGTCACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
66 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* ** * *
16525848 TTCCATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGG
131 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
*
16525913 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTTGGCATGCACAAAAAAATTC
196 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA--TTTTTGTTGGCATGCACAAAAAAATTC
*
16525978 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
259 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACAC
16526043 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
324 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-A
* * *
16526108 -AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCAACCATCACACATCATGT
388 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
16526172 GCGCACACCCCCCCAGCCCTCTCTATCGTCGGAACCCCAATGTCGCCGGTCAGG-T-T----C--
453 GCGCACA-CCCCCCAGCCCCCTCGATCGTCGGAACCCCAATGACGCCGGTCAGGTTCTCCGGCGA
* *
16526229 ---T---CCGACGAAGAAAAATGCGGCAGCAGCACATGCCCGAGCCTAGCATGTGCTGCCACAAC
517 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAAC
* ** * *
16526288 CCTTGGTCCAATCCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCG
582 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * * * *
16526353 TATGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTCAACCGGCCAAAGGGGCGGGATGCAC
647 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGC
* * ** * * * * * * **
16526418 AAGTCGGGGACCGATCGAGTCCCCCTCTACGTGCTGTCGATCCTACTGCTGTAACCTTCAATCCG
712 AAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCCG
* * *
16526483 ATCCAATCTAAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACGAGTGGGCGGGC
777 ATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGC
* *
16526548 GGGCGGGCATTACT-TCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
838 GGGCGGGCACTA-TGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * * **
16526595 TCGATAAGGTGGTAGGTGGCTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATG
1 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATG
* * * *
16526660 GCTTGTAAATTCATACAATTGTCCGTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATT
66 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
** * * *
16526725 TTCTATTTTTCACGATTTTCAAAACTTTTTATGGTTCGGGTTTTTTTAAAATTTTTTCAGAAGGA
131 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
** ** *
16526790 GTTTTCTCCCCAAACTTATTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
196 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* *
16526855 CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTAAGACACTT
261 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTT
* * *
16526920 TAATGGCTGCTAGCAGCAAACCTGTAAAGTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAG
326 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAG
* *
16526985 GTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCGCCCATCGCACATCATGTGCG
391 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * *
16527050 CACACCCCCTTAGCCCCCCCGATCGTCGGAACGCCAATGACGCCAGTCAGGTTCTCCGGCGATGG
456 CACACCCCC-CAGCCCCCTCGATCGTCGGAACCCCAATGACGCCGGTCAGGTTCTCCGGCGATGG
** * * *
16527115 TGCCCCGGTGAAGAAAAATTCAGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACTCT
520 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCT
*
16527180 CGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
585 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * *
16527245 GCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTTAGCCGGCTAGAGGGGCGGGATGCGCAA-
650 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAG
* * * *
16527309 CTCGGGGATCGGCCGGGTCCCTCTCTGCGTGCTGCCGATCCTACTGCCGTAACCCTCGGTCTGGT
715 C-CGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCCGAT
* * *
16527374 CCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAGCGGGCGGGCGG
779 CCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
*
16527439 GCACTATGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGA
844 GCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * * *
16527480 CCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGTGTGCCAAAGCCATTTTTGTG
1 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATG
16527545 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
66 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * ** *
16527610 TTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGATATTTTTTAAAATTTTTTCGGAAGCA
131 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
16527675 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
196 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* ** * *
16527740 CTAAAAACTCAAAGTGTACAAGATTTTGTGAAAATTTGAAAAAAGTGTCCCCATTTCAGACAGTT
261 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTT
* * * **
16527805 TAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCCCGAG
326 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAG
* *
16527870 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATATGCG
391 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * *
16527935 CACACCCCCCGGCCCCC-CAGATCGTTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCATGCT
456 CACACCCCCCAGCCCCCTC-GATCGTCGGAACCCCAATGACGCCGGTCAGG---T------T-CT
* * * *
16527999 CCGGCGATGGGGGCCCCGACAAAGAAAAATGCGGCACCAACACATGCCCGAGCCTAGCACGTGCT
510 CCGGCGAT-GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCT
* * * * *
16528064 GCCGCAACCCTTGGTCCGGTTCGATCTTAGATTGGGAATGAACTTCATATGCTTAGACTGGGAAT
574 GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
** *
16528129 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTTGCTCAGCCAACCAGAGGGGCG
639 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCG
* * *
16528194 GGATGCGTAAGCCGGGGATCGGCCGGGT-CCCCTCTGTGCGCTGCCGATCCTACTGCCGCAACCC
704 GGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCC
** * * * *
16528258 TCGGTTTGGTCAAATCTTAGATTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGC
769 TCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * * * *
16528323 GGGCAGGCGGGCACTACGTCGGCCAAAGCGACGGGATGCGCAAGCCGTTGA
834 GGGCGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* ** *
16528374 TCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATG
1 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATG
* *
16528439 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTTGTT
66 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* *
16528504 TTCTATTTTTCATGATTTTTGAAACCTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
131 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* * ** * *
16528569 TTTTTGGCCCCAAACTTGTTAGATATGATCCTTGTATTTTTGCTGGCATGCACAAAAAAATTTAG
196 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* *
16528634 CTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCA-TTACAGACACT
261 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTA-AGACACT
* * * *
16528698 TTAATTGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAA-GGGGTGTGAGTTATTGA
325 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGA
* * * *
16528762 GGTTTGGTGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCTATTGCACATCATGTGC
390 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* ** *
16528827 GCACACCCCCCGGCCCCCTCGATCACCGGAACCCCAATG-CTGCCGATCAGGTTCTTCGACGATG
455 GCACACCCCCCAGCCCCCTCGATCGTCGGAACCCCAATGAC-GCCGGTCAGGTTC-TC--CG--G
* * *
16528891 CTCTGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGGCCGAGCCCAGCATGTGC
514 --C----GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGC
* * * * *
16528956 TACCGCAACCCTCGATCCAGTCCGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACCTGGGA
573 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-CTGGGA
* * * * * *
16529021 TTGAACTCCGTATGCCTAAGTC-A---ATGAAATGAGCGTACGGGTGCTCAGCCGGCCAGAGGGG
637 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGG
16529082 C
702 C
16529083 AGGGCGGGCA
Statistics
Matches: 2939, Mismatches: 347, Indels: 143
0.86 0.10 0.04
Matches are distributed among these distances:
857 252 0.09
858 2 0.00
860 1 0.00
861 9 0.00
862 2 0.00
863 1 0.00
865 2 0.00
866 1 0.00
869 1 0.00
870 3 0.00
871 3 0.00
872 3 0.00
873 2 0.00
874 10 0.00
875 251 0.09
876 1 0.00
877 202 0.07
878 1 0.00
879 204 0.07
881 213 0.07
882 39 0.01
883 3 0.00
884 37 0.01
885 467 0.16
886 3 0.00
887 1 0.00
888 1 0.00
889 267 0.09
890 35 0.01
892 1 0.00
893 219 0.07
894 512 0.17
895 189 0.06
896 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (884 bp):
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCAGCCCCCTCGATCGTCGGAACCCCAATGACGCCGGTCAGGTTCTCCGGCGATGGT
GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTC
GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGC
CGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCCGATCC
AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
ACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
Found at i:16528140 original size:26 final size:26
Alignment explanation
Indices: 16528089--16528141 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16528079 CCGGTTCGAT
* *
16528089 CTTAGATTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16528115 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16528141 C
1 C
16528142 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16529032 original size:27 final size:26
Alignment explanation
Indices: 16528982--16529035 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
16528972 CCAGTCCGAT
*
16528982 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
16529008 CTTAGACCTGGGATTGAACTCCGTATG
1 CTTAGA-CTAGGAATGAACTCCGTATG
16529035 C
1 C
16529036 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 6 0.25
27 18 0.75
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16529712 original size:26 final size:26
Alignment explanation
Indices: 16529683--16529735 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16529673 CCGGTCCGAT
*
16529683 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
16529709 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
16529735 C
1 C
16529736 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16532468 original size:884 final size:879
Alignment explanation
Indices: 16529567--16533730 Score: 4559
Period size: 866 Copynumber: 4.7 Consensus size: 879
16529557 GGGCCAAATA
* * * * *
16529567 CCGCTGGTCAGGTTCTTCGACGATGCTCCGGTGACGGTGCCTCAGCGAAGAAAAATACGGC-CTC
1 CCGCTGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCAGCGAAGAAAAATGCGGCAC-C
* *
16529631 AACACATGCCCAAGCCCAGCATGTGCTGTCGCAACCTTCGGTCCGGTCCGATCTTAGACTAGGAA
65 AGCACATGCCCGAGCCCAGCATGTGCTGT-GCAACCTT-GGTCCGGTCCGATCTTAGAC-AGGAA
** * * *
16529696 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTATGTCAACCCATGGAACGAGCGT
127 TGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * **
16529761 GC-GGCTGCTCAGTCGGCCAGAAGGG-TACGATGCGTAAG-TCGGGGGTCGGTCGGGTCCCCCTC
192 GCGGGC-GCTCAGTCGGCCAGAAGGGCGA-GATGCGCAAGCT-GGGGATCGACCGGGTCCCCCTC
* * * * *
16529823 TGTGTGCTACTGATCCTGCTGCCACAACCCTCAGTCCGGCCCAATCTTAGACTGGGAATGAACTC
254 TGCGTGCTACCGATCCTGCTGCTACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * * * *
16529888 CGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGAGGGCACTACACCGGCCAGAGAGA
319 CGTATGCCTAAGCCAACCGATGAAACGAGCGGAC-GGCGGGCGGGCACTACGCCGACCAGAGAGA
* * *
16529953 CGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTGATATTTCTGT
383 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* *
16530018 GTGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTCCACATGAAGTT
448 GTGCCAAT-GCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * ** *
16530083 TCTTGCCAAGACGACTCGTTTTCTCTTTTCCATGATTTTTGAAACTTTTTGCAGTACAAGATTTT
512 TCATGGCAAGACGACTCG-TTT-TC---T--AT--TTTTTG--A-TGGTT--AGT--GAGATTTT
** *
16530148 TTAAAATTTTTTCGGAAGGAGTTTCAGCCCCAAACTTAGTAGACGTGATCCTTGTATTTTTGTTG
561 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* *
16530213 GCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
626 GCAAGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* **
16530278 AGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTTCAATCTCAAATGCTCTTTA
691 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
*
16530343 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCT
756 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * *
16530408 CCCATCGCACATCATGTGCGCACA--CCCCCTGGCCCCCCGATCGCCGGAACACCAACG
821 CCCATCGCACATCATGTGCGCACACCCCCCCCGGCCCCCCGATCGTCGAAACCCCAATG
* * * * * * *
16530465 CCGCCGATCAGGTTCTCCGGCGATGCTCCGGGGATGGTGCCCC-GATGAAGAAAAATACAGCACC
1 CCGCTGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCAG-CGAAGAAAAATGCGGCACC
* *
16530529 AGCACATGCCCGAGCCAAGCATGTGCTGTTGCAA-C-----CC--T-CGGTC-----C----A-G
65 AGCACATGCCCGAGCCCAGCATGTGCTG-TGCAACCTTGGTCCGGTCCGATCTTAGACAGGAATG
* * * *
16530575 ---TCCG-AT-CTTTGACTGGGAATGAACT-TCGTATGCCTAAGTCAACCCATGAAATGAGTGTG
129 AACTCCGTATGCTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * ** ** *
16530634 CGGGCGCTCAGCCGGCCAGAAGGGTGGGATGCATAATTTGGGGATCGACCGGG-GCCCCTCTGCG
193 CGGGCGCTCAGTCGGCCAGAAGGGCGAGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCG
* * * * * * ** * *
16530698 TGCTGCTGATCCTGCTACTGCAACCCTCGGTCCGATTTGATCTTAGACTGGGAATGAACTCTGTG
258 TGCTACCGATCCTGCTGCTACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
*
16530763 TGCCTAAGTCAACCGATGAAACGAGC--A-GGCGGGCGGGCACTACGCCGACCAGAGAGACGGGA
323 TGCCTAAGCCAACCGATGAAACGAGCGGACGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGA
* * * * *
16530825 TGCGTAAGCTGTGGATCGATAGGATGGTAGGTGAGTTTAGGCACATCTTCATATTTCTACGTGCC
388 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
*
16530890 AATGCCATTTTTATGGCTTGT-AATTCATACAATGTTCCCTTAAGCCTTCACGTGAAGTTTCATG
453 AATG-CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * *
16530954 TCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAA
517 GCAAGACGACTCGTTTTCTATTTTT--TGA----TG------GTTA--G--TGAGATTTTTTAAA
* * ** *
16531019 GTTTTCTCGGAAGGAGTTTTGGCCATAAACTTGGTAGACGTGATCCTTGTATTTTTG-TGGGAAT
566 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAA-
* **
16531083 GCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGATAATTTGAAAAAAGTGTC
630 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
16531148 CCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCCGTAAAATCTCAAATGCTCTTTAAGGG
695 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
16531213 GGTTTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCATCACCCA
760 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* *
16531278 TTGCACATCATGTGCGCACA--CCCCCCGGCCCCCCCGATCGTCGGAA-CCCAATG
825 TCGCACATCATGTGCGCACACCCCCCCCGG-CCCCCCGATCGTCGAAACCCCAATG
* * * ** * * *** *
16531331 CCGCCGATTAGGTTCTCCGGTGATGCTCCGGCAATGGTGTCTTGGCGAAGAAAAATGTGGCACCA
1 CCGCTGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCAGCGAAGAAAAATGCGGCACCA
* * *
16531396 GCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTTCAGTCCGATCTTAGACTGGGAAT
66 GCACATGCCCGAGCCCAGCATGTGCTGT-GCAA-CCTTGGTCCGGTCCGATCTTAGAC-AGGAAT
* * * *
16531461 GAACTTCGTATGCTTAGGCTAGG-ATCGAACTCTGTATGCCTAAGTCAACCCACGAAACGGGCGT
128 GAACTCCGTATGCTTAGACTGGGAAT-GAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * * **
16531525 ACCGGCGTTCAGTCGGCCAGAGGGGCGGGATGCGCAA-TTCGGGGATCGGTCGGGTCCCCCTCTG
192 GCGGGCGCTCAGTCGGCCAGAAGGGCGAGATGCGCAAGCT-GGGGATCGACCGGGTCCCCCTCTG
* * * * * *
16531589 CGTGCGACCAATCTTGCTACTACAACCCTC-GATCCAGTCTGATCTTAGACTGGGAATGAACTCC
256 CGTGCTACCGATCCTGCTGCTACAACCCTCAG-TCCGGTCCGATCTTAGACTGGGAATGAACTCC
* * * *
16531653 ATATGCCTAAGCCTACCGATGAAACGAGCGGACGAGCAGGGCGGGCACTACGCCGGCCTGAGAGA
320 GTATGCCTAAGCCAACCGATGAAACGAGCGGACG-GC-GGGCGGGCACTACGCCGACCAGAGAGA
* **
16531718 CGGGATGCGCAAGCCGTCGATCGATAGGGTTCTAGGTGGGTTTAGGCACAT-TTCCATATTTCTG
383 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT-CATATTTCTG
* * * * *
16531782 CATGCCAATGCAATTTTTATGGCTTGTATATTCATATAATGGTCCCTGAAGCCTTCACATGAAGT
447 CGTGCCAATGC-ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
*
16531847 TTCATGGCAAGACGACTCGTTTTCTATTTTTTG-TGGTTAG-GA-ATTTTTTAAAATTTTTTGGG
511 TTCATGGCAAGACGACTCGTTTTCTATTTTTTGATGGTTAGTGAGATTTTTTAAAATTTTTTCGG
* *
16531909 AAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCCTT-TATTTTTTTTGGCAAGCACAAAAA
576 -AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT-CCTTGTATTTTTGTTGGCAAGCACAAAAA
16531973 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTC
639 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTC
* * *
16532038 AGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAACTGCTCTTTAAGGAGGTGTGAG
703 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
16532103 TTCTCAAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
768 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * **
16532167 CAAGTGCGTACACCCCACCCCAACCCCCCGATCGTCGAAACCCCAATG
833 CATGTGCGCACACCCC-CCCCGGCCCCCCGATCGTCGAAACCCCAATG
* * * *
16532215 CCGCTGGTCAGGTTCTCCGACAATGCTCCAGCGATGGTGCCCCAGTGAAGAAAAATGTGGCACCA
1 CCGCTGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCAGCGAAGAAAAATGCGGCACCA
* * * *
16532280 GCACATGCTCGAGCCCAGCATGTGCTGCTGCAACCATTGCTCTGGTCTGATCTTAGACAGTGAAT
66 GCACATGCCCGAGCCCAGCATGTGCTG-TGCAACC-TTGGTCCGGTCCGATCTTAGACAG-GAAT
* *
16532345 GAACTCCGTATGCTTAAACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTA
128 GAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * *
16532410 CGGGCGCTCAGTTGACCAGAAGGGCGAGATGTGCAAGCTGCGGATCGACCGGGTCCCCCTCTGCG
193 CGGGCGCTCAGTCGGCCAGAAGGGCGAGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCG
**
16532475 TGCTACCGATCCTGCTGCTGA-AACCCTCAGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGT
258 TGCTACCGATCCTGCTGCT-ACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* *
16532539 ATGCCTAAGCCAACCGATGAAACGAGC-G--GGCGGGCGGGCACTACGCCGAACAGAGAGATGGG
322 ATGCCTAAGCCAACCGATGAAACGAGCGGACGGCGGGCGGGCACTACGCCGACCAGAGAGACGGG
* * * *
16532601 ATGCGCAGGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGC
387 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGC
*
16532666 CAATGCCA-TTTTATGGCTTGTAAATTCATACATTGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
452 CAATG-CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* ** * **
16532730 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTCATAA
516 GGCAAGACGACTCGTTTTCTA---TT-----TTTT---GA-TGGTTA--G-T-GAGATTTTTTAA
* * * * *
16532795 AATTTTTTCAGAAGGAGTTTTGGCACCAAACTTGGTACACGTGATCCTTGTATTTTTGTTGGTAT
565 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAA
* * * *
16532860 GCATAAAAAACTTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTATC
630 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
16532924 CCCATTTCAGACACTTTAATGGGTACTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGG
695 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * *
16532989 GGTGTGAGTTCTTGAGGTTTGATGGGGGATAGGGGGCCGATATAAGGGCCAAGTACCAGCACCCA
760 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * *
16533054 TCGCACATCATGTGCGCACA-CCCGCCCGGCCCCTCCGATC-TCCAGAACCACAATG
825 TCGCACATCATGTGCGCACACCCCCCCCGGCCCC-CCGATCGTCGA-AACCCCAATG
* * *
16533109 TCGCCT-GTCACGTTCT-C--CGA--------CGATGGTGCCCCGGCGAAGAAAAATGCGGCACC
1 CCG-CTGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCAGCGAAGAAAAATGCGGCACC
* * * * * * **
16533162 AGCACATGCCTGAGCCTAGCATGTACAGCCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAA
65 AGCACATGCCCGAGCCCAGCATGTGCTG-TGCAA-CCTTGGTCCGGTCCGATCTTAGA-CAGGAA
* * *
16533227 TGAACTCCGTATGCTTAGTCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGT
127 TGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * *
16533292 GTGGGCGCTCAGTCGGCCAGAGGGGC-AGGATGCACAAGCCGGGGATCTACCGGGTCCCCC-CTT
192 GCGGGCGCTCAGTCGGCCAGAAGGGCGA-GATGCGCAAGCTGGGGATCGACCGGGTCCCCCTC-T
* * * * * * *
16533355 GACATGCTACCGATCCTGTTGCCACAATCCGTCAGTCTGGTCCAATCTTAGAC-CGGAATGAACT
255 G-CGTGCTACCGATCCTGCTGCTACAA-CCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * * * * * * * *
16533419 TCGTATACCTAAGCCAACCGACGAAATGAGCGGGCGGGCGAGCGAGCAGTACGCCGACCGGAGAG
318 CCGTATGCCTAAGCCAACCGATGAAACGAGCGGAC-GGCGGGCGGGCACTACGCCGACCAGAGAG
* * * * *
16533484 ATGGGATGTGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATGTTCATATTTCTA
382 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
*
16533549 CGTGCCAATGGCATTTTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
447 CGTGCCAAT-GCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
** * *
16533614 TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTCCAAAACTTTTTGGGTTCGAGATTCT
511 TTCATGGCAAGACGACTCGTTTTCTATTTTT--TG---------A-TGGTT-AG-T-GAGATTTT
16533679 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
561 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
16533731 NNNNNNNNNN
Statistics
Matches: 2789, Mismatches: 345, Indels: 274
0.82 0.10 0.08
Matches are distributed among these distances:
857 5 0.00
859 4 0.00
860 1 0.00
861 1 0.00
864 2 0.00
865 8 0.00
866 414 0.15
867 125 0.04
868 2 0.00
871 85 0.03
872 83 0.03
873 7 0.00
874 4 0.00
875 1 0.00
876 4 0.00
877 1 0.00
878 73 0.03
879 89 0.03
880 22 0.01
881 147 0.05
882 111 0.04
883 214 0.08
884 361 0.13
885 29 0.01
886 10 0.00
887 1 0.00
888 153 0.05
889 84 0.03
890 3 0.00
891 14 0.01
892 84 0.03
893 98 0.04
894 126 0.05
895 57 0.02
896 96 0.03
897 25 0.01
898 182 0.07
899 63 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (879 bp):
CCGCTGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCAGCGAAGAAAAATGCGGCACCA
GCACATGCCCGAGCCCAGCATGTGCTGTGCAACCTTGGTCCGGTCCGATCTTAGACAGGAATGAA
CTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
GCGCTCAGTCGGCCAGAAGGGCGAGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGC
TACCGATCCTGCTGCTACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
CTAAGCCAACCGATGAAACGAGCGGACGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGC
GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAAT
GCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
GACGACTCGTTTTCTATTTTTTGATGGTTAGTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAAGCACAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
CCCCCCCGGCCCCCCGATCGTCGAAACCCCAATG
Found at i:16533277 original size:883 final size:889
Alignment explanation
Indices: 16530585--16533730 Score: 3809
Period size: 884 Copynumber: 3.5 Consensus size: 889
16530575 TCCGATCTTT
* * * * *
16530585 GACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGCTCAGCCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGC
* * ** ** * * *
16530650 CAGAAGGGTGGGATGCATAATTTGGGGATCGACCGGG-GCCCCTCTGCGTGCTGCTGATCCTGCT
66 CAGAAGGGCGAGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTGCT
* * * * ** * * *
16530714 ACT-GCAACCCTCGGTCCGATTTGATCTTAGACTGGGAATGAACTCTGTGTGCCTAAGTCAACCG
131 GCTCACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * *
16530778 ATGAAACGAGCAGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGTAAGCTGTGGATCG
196 ATGAAACGAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * *
16530843 ATAGGATGGTAGGTGAGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
261 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
* * *
16530908 TGT-AATTCATACAATGTTCCCTTAAGCCTTCACGTGAAGTTTCATGTCAAGACGACTCGTTTTT
326 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
** * * *
16530972 TATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAGTTTTCTCGGAAGGAGTT
391 TATTTTTCATGATTTTCAAAACTTTTT-CGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTT
** * *
16531037 TTGGCCATAAACTTGGTAGACGTGATCCTTGTATTTTTGTGGGAATGCACAAAAAAATTCAGCTA
455 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* ** *
16531102 AAAACTTGAAGTGTACAAGATTTTGTGATAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
520 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAA
* * *
16531167 TTGCTACTGGCAGCAAACCCGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTCGAGGTT
585 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
16531232 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCATCACCCATTGCACATCATGTGCGCAC
650 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * *
16531297 ACCCCCCGGCCCCCCCGATCGT-CGGAACC-CAATGCCGCC--GATTAGGTTCTCCGGTGATGCT
715 ACCCCCCGG-CCCCCCGATCGTCCAGAACCACAATGCCGCCTGGATCACGTTCTCC-GCGA----
* ** *
16531358 CCGGCAATGGTGTCTTGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
774 CC-G--ATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * *
16531423 TCGCAACCCTTGGTTCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTA
836 TCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * * * *
16531477 GGCTAGG-ATCGAACTCTGTATGCCTAAGTCAACCCACGAAACGGGCGTACCGGCGTTCAGTCGG
1 GACTGGGAAT-GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGG
* * * ** * * *
16531541 CCAGAGGGGCGGGATGCGCAA-TTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCGACCAATCTTG
65 CCAGAAGGGCGAGATGCGCAAGCT-GGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTG
* * * * *
16531605 CTACT-ACAACCCTC-GATCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCTA
129 CTGCTCACAACCCTCAG-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
16531668 CCGATGAAACGAGCGGACGAGCAGGGCGGGCACTACGCCGGCCTGAGAGACGGGATGCGCAAGCC
193 CCGATGAAACGAGC-G--G-GC-GGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCC
* ** * *
16531733 GTCGATCGATAGGGTTCTAGGTGGGTTTAGGCACAT-TTCCATATTTCTGCATGCCAATGCAATT
253 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT-CATATTTCTGCGTGCCAATGCCATT
* * * *
16531797 TTTATGGCTTGTATATTCATATAATGGTCCCTGAAGCCTTCACATGAAGTTTCATGGCAAGACGA
317 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
16531862 CTCGTTTTCTATTTTT--TG---------------T-GGTTAG-GAATTTTTTAAAATTTTTTGG
382 CTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTCGGTTCGAG-ATTTTTTAAAATTTTTTCG
* * *
16531908 GAAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCCTT-TATTTTTTTTGGCAAGCACAAAA
446 G-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT-CCTTGTATTTTTGTTGGCATGCACAAAA
*
16531972 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTT
509 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTATCCCCATTT
* * *
16532037 CAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAACTGCTCTTTAAGGAGGTGTGA
573 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
16532102 GTTCTCAAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
638 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * ** * * *
16532166 TCAAGTGCGTACACCCCACCCCAACCCCCCGATCGTCGA-AACCCCAATGCCG-CTGG-TCAGGT
703 TCATGTGCG--CACACC-CCCCGGCCCCCCGATCGTCCAGAACCACAATGCCGCCTGGATCACGT
* * * * *
16532228 TCTCCGACAATGCTCCAGCGATGGTGCCCCAGTGAAGAAAAATGTGGCACCAGCACATGCTCGAG
765 TCTCCG-C---G----ACCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * * * *
16532293 CCCAGCATGTGCTG-CTGCAACCATTGCTCTGGTCTGATCTTAGACAGTGAATGAACTCCGTATG
822 CCCAGCATGTGCTGTC-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
16532357 CTTA
886 CTTA
* * * * *
16532361 AACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGTTGAC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGC
* *
16532426 CAGAAGGGCGAGATGTGCAAGCTGCGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTGCT
66 CAGAAGGGCGAGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTGCT
* **
16532491 GCTGA-AACCCTCAGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
131 GCTCACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
16532555 ATGAAACGAGCGGGCGGGCGGGCACTACGCCGAACAGAGAGATGGGATGCGCAGGCCATGGATCG
196 ATGAAACGAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* *
16532620 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCA-TTTTATGGCT
261 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
*
16532684 TGTAAATTCATACATTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
326 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * ** *
16532749 TATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTCATAAAATTTTTTCAGAAGGAGTT
391 TATTTTTCATGATTTTCAAAACTTTTT-CGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTT
* * * * *
16532814 TTGGCACCAAACTTGGTACACGTGATCCTTGTATTTTTGTTGGTATGCATAAAAAACTTCAGCTA
455 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
16532879 AAAACTCAAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTATCCCCATTTCAGACACTTTAA
520 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAA
* * *
16532943 TGGGTACTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGGGGTGTGAGTTCTTGAGGTT
585 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
16533008 TGATGGGGGATAGGGGGCCGATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
650 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
*
16533073 ACCCGCCCGGCCCCTCCGATC-TCCAGAACCACAATGTCGCCT-G-TCACGTTCT-C-CGA-CGA
715 ACCC-CCCGGCCCC-CCGATCGTCCAGAACCACAATGCCGCCTGGATCACGTTCTCCGCGACCGA
* * * * *
16533132 TGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCTAGCATGTACAGCCGCAAC
778 TGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAAC
*
16533197 CCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTA
843 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
16533244 GTCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCAGTCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGC
* * * * *
16533309 CAGAGGGGC-AGGATGCACAAGCCGGGGATCTACCGGGTCCCCC-CTTGACATGCTACCGATCCT
66 CAGAAGGGCGA-GATGCGCAAGCTGGGGATCGACCGGGTCCCCCTC-TG-CGTGCTACCGATCCT
* * * * * * *
16533372 GTTGC-CACAATCCGTCAGTCTGGTCCAATCTTAGAC-CGGAATGAACTTCGTATACCTAAGCCA
128 GCTGCTCACAA-CCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
16533435 ACCGACGAAATGAGCGGGCGGGCGAGCGAGCAGTACGCCGACCGGAGAGATGGGATGTGCAAGCC
192 ACCGATGAAACGAGCGGGCGGGC--G-G-GCACTACGCCGACCAGAGAGACGGGATGCGCAAGCC
* * * *
16533500 GTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATGTTCATATTTCTACGTGCCAATGGCATTT
253 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
*
16533565 TTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
318 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
16533630 TCGTTTTCTATTTTTCATGATTTCCAAAACTTTTTGGGTTCGAGATTCTTTAAAATTTTTTCGGA
383 TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGGA
16533695 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
448 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
16533731 NNNNNNNNNN
Statistics
Matches: 1942, Mismatches: 239, Indels: 150
0.83 0.10 0.06
Matches are distributed among these distances:
878 77 0.04
879 91 0.05
880 27 0.01
881 140 0.07
882 107 0.06
883 217 0.11
884 356 0.18
885 28 0.01
886 2 0.00
887 3 0.00
888 145 0.07
889 98 0.05
891 6 0.00
892 80 0.04
893 101 0.05
894 123 0.06
895 54 0.03
896 95 0.05
897 27 0.01
898 104 0.05
899 61 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGC
CAGAAGGGCGAGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTGCT
GCTCACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ATGAAACGAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
TATTTTTCATGATTTTCAAAACTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCCGGCCCCCCGATCGTCCAGAACCACAATGCCGCCTGGATCACGTTCTCCGCGACCGATGG
TGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCT
CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
Found at i:16535026 original size:26 final size:26
Alignment explanation
Indices: 16534997--16535049 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16534987 CTGGTTTGAT
* *
16534997 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
16535023 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
16535049 C
1 C
16535050 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:16535916 original size:26 final size:26
Alignment explanation
Indices: 16535887--16535939 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16535877 CTGGTTTGAT
* *
16535887 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
16535913 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
16535939 C
1 C
16535940 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:16536814 original size:26 final size:26
Alignment explanation
Indices: 16536785--16536837 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16536775 CCGATCCGAT
16536785 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
16536811 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16536837 C
1 C
16536838 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16537671 original size:26 final size:26
Alignment explanation
Indices: 16537635--16537686 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16537625 TAGTCCGATA
*
16537635 TTAGACTGGGAATGAACTCCTTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
16537661 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
16537687 CTAGTCAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:16538180 original size:845 final size:848
Alignment explanation
Indices: 16536507--16540887 Score: 2681
Period size: 903 Copynumber: 5.0 Consensus size: 848
16536497 ACTTTAATGG
*
16536507 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTCAAAATTTGA
1 CTACCGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTCAAAATTTGA
* * *
16536572 TGAGGGATAGGGGGCCAATATAAAGGCCAAGTGCCAGCACCCATCACACATCATGTGCGCACACC
66 TGAGAGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCACAAATCATGTGCGCACACC
* * * * * ** *
16536637 CCCCAGCCCCCCCGATCATCGGAACCCCATTGCCGTCGGTAAGGTTCTACGGTGATGCTCTAGCG
131 CCCCAGCCCCCCCGATCACCGAAAACCCAATGCCATCGGTAAGGTTCTACGACGATGCTCTAGCA
*** * * *
16536702 ATGATGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGCAA
196 ATGATGCCCCGACGAAGAAAAAAACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAA
* *
16536767 CCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
261 CCCTCAGTCAGATCCGATATTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
** * *
16536832 GTATGCCTAAGTCAACCAACGAAAGGAGCGTGCGGAAGCTCAACAGGCCAGAGAGGCATGATGCG
326 GTATGCCTAAGTCAACCAACGAAACAAGCGTACGGAAGCTCAACAGGCCAGAGAGGCAGGATGCG
* * * * * ** *
16536897 CCAGCCGGGGATCGGCCGGGTCCCTCTCTGTGTGCTATAGATCCTGCTGTCGCAACCTTCGATTC
391 CAAGCCGGGGATCGACCGAGTCCCTCTCTGCGTGCTATAGATCCTACTACCGCAACCTTCGATCC
* * * * *
16536962 GATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCGATCGACGAAACAAGCTAGCGGC
456 GATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAACCAATCGACGAAACAAGCGAGCGGA
* *
16537027 CGGGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAAACATGGATCGATAGGG
521 CGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAAACATGGATCGATAGGG
**
16537092 TGGTAGGTGGGTTTAGGCACATCTTCATATCTCTATGTGCCAATGCCATTTTTATGGCTTGTAAA
586 TGGTAGGTGGGTTTAGGCACATCTTCATATCTCTACATGCCAATGCCATTTTTATGGCTTGTAAA
* **
16537157 TTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCGAGACGACTTGTTTTCTATTTT
651 TTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTT
** * * * * *
16537222 TCACAATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTAATTTTTTGAAAGTAGTTTTGGCCCC
716 TCACAATTTTCAAAACTTTTTACGATTCGGGATTTTTTAAATTTTTTGAAAGGAGTTTGGGCCCC
*
16537287 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGAATGCATAAAAAAATTCAGCTAAAATTTCC
781 AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGAATGCA-AAAAAAATTCAGCTAAAATTTCC
16537352 TAGC
845 TAGC
* ** * **
16537356 CTACCGGCAGCAAACCTGTTAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGAGGTTTGA
1 CTACCGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTCAAAATTTGA
* * * **
16537421 TGAGAGATAGGGTGCCAATATAAGGGTCAAGTACCAGCACCCATCGTAAATCATGTGCGCACACC
66 TGAGAGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCACAAATCATGTGCGCACACC
* * * * * *
16537486 CCCCGGCCCCCCTGATCACCGAAAATCCAATGCCATCGGTCAGGTTCTTCGACGATGCTCTGGCA
131 CCCCAGCCCCCCCGATCACCGAAAACCCAATGCCATCGGTAAGGTTCTACGACGATGCTCTAGCA
* *
16537551 ATGGTGCCTCGACGAAGAAAAAAACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAA
196 ATGATGCCCCGACGAAGAAAAAAACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAA
* *
16537616 CCCTC-GATCTAG-TCCGATATTAGACTGGGAATGAACTCCTTATGCTTAGACTGGGAATGAACT
261 CCCTCAG-TC-AGATCCGATATTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
** * * * * * *
16537679 CCGTATGCCT-AGTCAACC-ACGAAACAAGCGTACGGGCGTTTAGCCGGCCAGAGGGGCGGGATG
324 CCGTATGCCTAAGTCAACCAACGAAACAAGCGTACGGAAGCTCAACAGGCCAGAGAGGCAGGATG
* * * *
16537742 CGTAAGCTGGGGATCGACCGAGTCCC-CTCTGCGTGCTGTCA-ATCCTACTACCGTAACCCTT-G
389 CGCAAGCCGGGGATCGACCGAGTCCCTCTCTGCGTGCTAT-AGATCCTACTACCGCAA-CCTTCG
* * * *
16537804 GTCCGATC-GATCTTAGACTAGGAATGAATTCCGTATGCCTAAACCAATCGACGAAGCGAA-CGG
452 ATCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAACCAATCGACGAAAC-AAGCGA
* * ** *
16537867 GCGGACGGGCGGGCGGGTGGGCACTATGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGA
516 GCGGACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAAACATGGATCGA
* * * *
16537932 TAGGGTTGTAGGTGGGTTTGGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
581 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATCTCTACATGCCAATGCCATTTTTATGGCTT
* *
16537997 GTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCT
646 GTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCT
* ** **
16538062 ATTTTTTATGATTTTCAAAACTTTTTGTGATTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTT
711 ATTTTTCACAATTTTCAAAACTTTTTACGATTCGGGATTTTTT-AAATTTTTT-GAAAGGAGTTT
* *
16538127 GGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCCAA
774 GGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGAATGC-AAAAAAAATTCAG----
16538192 AAACTCGAAGTGTACAAGAATTTGTGACCATTTGAAAAAAGTGTCCCC
834 -----C------T--AA-AA-TT-T--CC---T------A--G----C
* * * * * *
16538240 ATTTCTAACACTTTAATGGCTACTGGCAGCAAGC-CTGTAAAATCTCAAATGCACTTTAAGGGGG
1 ----CT-AC-C---G---GC-A---GCA--AACCTGT-AAAAT-CTCAAATGCTCTTTAAGGGGG
* * ** * * *
16538304 TGTGAGTTCTCGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
46 CGTGAGTTCTCAAAATTTGATGAGAGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATC
* * * *** * * * ** *
16538369 GCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATTGTCGGAACCCCAAAGCCGCCGGTCAGG
111 ACAAATCATGTGCGCACA-CCCCCCAGCCCCCCCGATCACCGAAAACCCAATGCCATCGGTAAGG
* * * * ** *
16538434 TTCTCCGGCGTTGCTCT-GACAATGGTGCCCCGACGAAGTAAAAATGCAGCACCAGCACATGCCC
175 TTCTACGACGATGCTCTAG-CAATGATGCCCCGACGAAG-AAAAAAACGGCACCAGCACATGCCC
* * * * * * * * *
16538498 GAGTCTAGCATGTGCTGCCACAACCCT-TGATCTTG-TCCGATCTTACACTAGGAATGAACTCCA
238 AAGCCCAGCATGTGCTGCCGCAACCCTCAG-TC-AGATCCGATATTAGACTAGGAATGAACTCCG
* * ** * * **
16538561 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCGCT
301 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCGTACGGAAGCT
* * * * * * * * * * * *
16538626 CAGCCGGCCATAGGGGTAGGATGTGCAAGCTGGGGATCGACCGGGT-TCTCCTCTGCTTGCTGTC
366 CAACAGGCCAGAGAGGCAGGATGCGCAAGCCGGGGATCGACCGAGTCCCT-CTCTGCGTGCTATA
* ** * * *
16538690 GATTCTACTGTCGTAACCCTCGGTCC-AGTCTGATCTTAGACT-GCGAATGAACTCCGTATGCCT
430 GATCCTACTACCGCAACCTTCGATCCGA-TCTGATCTTAGACTAG-GAATGAACTCCGTATGCCT
* * *** * * *
16538753 AAGCCAACCGAC--AA-AA-CGAGCGGGTAGGCGAGCGCGTC-GGCACTACGTCGGCCAGCGAGA
493 AAACCAATCGACGAAACAAGCGAGCGGACGGGCGGGCG-GGCGGGCACTACGTCGGCCAGAGAGA
** * * * * * *
16538813 CAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTGGGTACATCTTCATATTTCTGC
557 CAGGATGCGCAAAACATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATCTCTAC
* *
16538878 ATGCGAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
622 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTT
* * * * * *
16538943 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAA--TTTTATGGTTCGAGATTT
687 TCATGGCAAGACGACTCATTTTCTATTTTTCAC-AATTTTCAAAACTTTTTACGATTCGGGATTT
* * ** * *
16539006 TTTAAAATTTTCTCAGAAA-GAGTTTTGGCCCCAAACTTTTTAGACGTGATCCTTGTATTTTTTT
751 TTT-AAATTTT-T-TGAAAGGAGTTTGGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGT
* ** ** *
16539070 TGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
813 TGGAATGCA-AAAAAAATTCAGCTAAAATTTCCTAGC
* * * ** ** * * **
16539107 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCTAGACACTTTAGTGGCTACTAGCA
1 CTAC-------CG-G--CA---G-CAAACCTGT--AAAATCT---CA----AAT-GCT-CT-TTA
***** * ** *
16539172 ACAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
40 AGGGGGC-GTGAGTTCTC-AA--------AAT----T-TGA----T-GA-G--AGAT-A--G---
* * * * **** * * * * * *
16539237 GGGGGCCA-ATATAAGGGCTAAGTACAAGCACCCATCGCACATCATGTGCGAACCCCCCCCCGGC
76 GGGGCCAATATA-AAGGCCAAGTACCAG-CACCCATCACAAATCATGTGCGCA-CACCCCCCAGC
* * * * ** * * * * *
16539301 CCCCCCGATCGCCGGAACCCCAAAGCTGTCGGTCAGGTTCTCCGACGATGCT-TCGACGATGGTG
138 CCCCCCGATCACCGAAAACCCAATGCCATCGGTAAGGTTCTACGACGATGCTCTAG-CAATGATG
* ** * * * *
16539365 CCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGTCCAGCATGTGCTGTCGCAACCCTCA
202 CCCCGACGAAGAAAAAAACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCA
* * * * *
16539430 GTCCCG-TCCAATCTTAGACTACGAATGAACTCCGTGTGCTTAGACTGGGAATGAACTCCGTATG
267 GT-CAGATCCGATATTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * ** * * * * *
16539494 CCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGCCGACCAGAGGGGCAAGATGCGCAAGC
331 CCTAAGTCAACCAACGAAACAAGCGTACGGAAGCTCAACAGGCCAGAGAGGCAGGATGCGCAAGC
** ** * * * ** * * * *
16539559 CGAAGATCGGTC-AGGTCCCCCTCTGTGTGTTGCCA-ATCCTACTACCGTAACCCTCGATCTGGT
396 CGGGGATCGACCGA-GTCCCTCTCTGCGTGCT-ATAGATCCTACTACCGCAACCTTCGATCCGAT
* * * * *
16539622 -TCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA-C-A-G-----A-CGA---AACG
459 CT-GATCTTAGACTAGGAATGAACTCCGTATGCCTAAACCAATCGACGAAACAAGCGAGCGGACG
* * * *** *
16539674 TGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACAGGATGCACAAGTTATGGATCGATAGAGTG
523 GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAAACATGGATCGATAGGGTG
* * *** * *
16539739 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGCACCAATGACACTTTTTATGGCTTTTAAAT
588 GTAGGTGGGTTTAGGCACATCTTCATATCTCTACATGCCAATGCCA-TTTTTATGGCTTGTAAAT
* * ** *
16539804 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTCTCATGTTAAGACAACTCATTTTCTATTTTT
652 TCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTT
** ** * ** * * *
16539869 CATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCC
717 CACAATTTTCAAAACTTTTTACGATTCGGGATTTTTT-AAATTTTTT-GAAAGGAGTTTGGGCCC
* * *
16539934 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGTTCAGCCAAAAACT
780 CAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGAATGCA-AAAAAAA-TTCAG-CTAAAA-T
*
16539999 CAAAGTGTACAAGATTTTATGAC
841 -----T-T-C------CTA-G-C
** * *
16540022 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACATGTAAAAT-C
1 C---T------A------CC--GGCAG-CA----AA---C--CT-GT---AAA-ATCTCAAATGC
* * * * ** * *
16540086 TCAAACGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
34 T------CT-TTAAGGGGGCGTGAGTTCTCAAAATTTGATGAGAGATAGGGGGCCAATATAAAGG
* * * ** * ** * *
16540151 ACAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCTCGATCGTCGGAACC
92 CCAAGTACCAGCACCCATCACAAATCATGTGCGCACACCCCCCAGCCCCCCCGATCACCGAAAAC
* * * * **
16540216 CCAATGCCGTCGGTCAGGTTCT-C--C-A-G--C--G--ATGGTGCCTCGACGAAGAAAAATGCG
157 CCAATGCCATCGGTAAGGTTCTACGACGATGCTCTAGCAATGATGCCCCGACGAAGAAAAAAACG
* * * * * * * ** * * *
16540270 ACACCAACACATGCCCGAGCCTAGCATGTGCTGTCACCACCCTTGGTCTGA-CCTGGTCTTAGAC
222 GCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCAGTCAGATCC-GATATTAGAC
** * *
16540334 GGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT
286 TAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAAC
* * * * * * * * * * *
16540399 GAGCGTGCAGG-CGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGGCCC
351 AAGCGTAC-GGAAGCTCAACAGGCCAGAGAGGCAGGATGCGCAAGCCGGGGATCGACCGAGTCCC
* * *** * * * * * * * * *
16540463 CCTCTGCGTGTTGCCGATCCTGCTGCCACAACCCTCGATCTGGTCTGATCTGAGATTGGGAATGA
415 TCTCTGCGTGCTATAGATCCTACTACCGCAACCTTCGATCCGATCTGATCTTAGACTAGGAATGA
* * * * *
16540528 ACTCCGTATGCCTAAGCCAACCGACG--A-AA-CGAGCGGGCGGGCGGGCGGGCGGGCACTATGC
480 ACTCCGTATGCCTAAACCAATCGACGAAACAAGCGAGCGGACGGGCGGGCGGGCGGGCACTACGT
* * ** * *
16540589 CGGCCAGAGACACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCT
545 CGGCCAGAGAGACAGGATGCGCAAAACATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
16540654 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
610 TCATATCTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * *
16540719 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACG
675 TCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTCAAAACTTTTTACG
* * ** *
16540784 GTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTTTGCCCCAAACTTGGTAGACGTGATCCT
740 ATTCGGGATTTTTT-AAATTTTTT-GAAAGGAG-TTTGGGCCCCAAACTTGGTAGACATGATCCT
* *
16540849 TGTATTTTTGTTGGCATGCATAAAAAGATTCAGCTAAAA
802 TGTATTTTTGTTGGAATGCA-AAAAAAATTCAGCTAAAA
16540888 ACTAGAAGTG
Statistics
Matches: 2840, Mismatches: 471, Indels: 400
0.77 0.13 0.11
Matches are distributed among these distances:
845 255 0.09
846 39 0.01
847 124 0.04
848 10 0.00
849 288 0.10
850 1 0.00
856 1 0.00
862 3 0.00
863 4 0.00
864 8 0.00
865 5 0.00
866 2 0.00
867 3 0.00
869 2 0.00
871 3 0.00
872 3 0.00
873 3 0.00
874 2 0.00
875 7 0.00
876 1 0.00
878 1 0.00
880 1 0.00
882 1 0.00
884 8 0.00
885 251 0.09
886 6 0.00
887 3 0.00
888 5 0.00
889 5 0.00
890 5 0.00
891 6 0.00
892 133 0.05
893 155 0.05
894 3 0.00
895 101 0.04
896 131 0.05
897 111 0.04
898 23 0.01
899 8 0.00
900 4 0.00
901 3 0.00
902 12 0.00
903 343 0.12
904 258 0.09
905 304 0.11
906 20 0.01
907 63 0.02
908 33 0.01
909 39 0.01
912 3 0.00
913 2 0.00
914 1 0.00
917 1 0.00
918 1 0.00
919 3 0.00
922 4 0.00
923 2 0.00
924 3 0.00
925 1 0.00
926 7 0.00
927 3 0.00
928 2 0.00
929 2 0.00
930 3 0.00
931 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (848 bp):
CTACCGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTCAAAATTTGA
TGAGAGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCACAAATCATGTGCGCACACC
CCCCAGCCCCCCCGATCACCGAAAACCCAATGCCATCGGTAAGGTTCTACGACGATGCTCTAGCA
ATGATGCCCCGACGAAGAAAAAAACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAA
CCCTCAGTCAGATCCGATATTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
GTATGCCTAAGTCAACCAACGAAACAAGCGTACGGAAGCTCAACAGGCCAGAGAGGCAGGATGCG
CAAGCCGGGGATCGACCGAGTCCCTCTCTGCGTGCTATAGATCCTACTACCGCAACCTTCGATCC
GATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAACCAATCGACGAAACAAGCGAGCGGA
CGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAAACATGGATCGATAGGG
TGGTAGGTGGGTTTAGGCACATCTTCATATCTCTACATGCCAATGCCATTTTTATGGCTTGTAAA
TTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTT
TCACAATTTTCAAAACTTTTTACGATTCGGGATTTTTTAAATTTTTTGAAAGGAGTTTGGGCCCC
AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGAATGCAAAAAAAATTCAGCTAAAATTTCCT
AGC
Found at i:16538577 original size:26 final size:26
Alignment explanation
Indices: 16538539--16538591 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16538529 CTTGTCCGAT
16538539 CTTACACTAGGAATGAACTCCATATG
1 CTTACACTAGGAATGAACTCCATATG
* * *
16538565 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCATATG
16538591 C
1 C
16538592 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCATATG
Found at i:16539286 original size:904 final size:900
Alignment explanation
Indices: 16537356--16541300 Score: 5204
Period size: 904 Copynumber: 4.4 Consensus size: 900
16537346 ATTTCCTAGC
* *
16537356 CTACCGGCAGCAAACCTGTTAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGAGGTTTGA
1 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-TGTGAGTTCTCGAGGTTTGA
* * * * *
16537421 TGAGAGATAGGGTGCCAATATAAGGGTCAAGTACCAGCACCCATCGTAAATCATGTGCGCACACC
65 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* ** * ** * * *
16537486 CCCCGGCCCCCCTGATCACCGAAAATCCAATGCCATCGGTCAGGTTCTTCGACGATGCTCTGGCA
130 CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGACA
* ** * * * *
16537551 ATGGTGCCTCGACGAAGAAAAAAACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAA
195 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCTAGCATGTGCTGCCACAA
* * *
16537616 CCCTCGAT-CTAGTCCGATATTAGACTGGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTC
260 CCCTTGATCCT-GTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTC
* * * *
16537680 CGTATGCCT-AGTCAA-CCACGAAACAAGCGTACGGGCGTTTAGCCGGCCAGAGGGGCGGGATGC
324 CGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGC
* * * * * *
16537743 GTAAGCTGGGGATCGACCGAGT-CCCCTCTGCGTGCTGTCAATCCTACTACCGTAACCCTTGGTC
389 GCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCAATCCTACTACCGTAACCCTCGATC
* * * * * *
16537807 CGATC-GATCTTAGACTAGGAATGAATTCCGTATGCCTAAACCAATCGACGAAGCGAACGGGCGG
454 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AA---AACGAGCGG
* * *
16537871 ACGGGCGGGCGGGTGGGCACTATGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGG
515 GCGGGCGGGC-GGTCGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGG
* *
16537936 GTTGTAGGTGGGTTTGGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
579 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
*
16538001 ATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTT
644 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTT
* * * * *
16538066 TTTATGATTTTCAAAACTTTT-TGTGATTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTGGG
709 TTCACGATTTTCAAAACTTTTACG-G-TTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG
* * *
16538130 CCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCCAAAAA
772 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAA
*
16538195 CTCGAAGTGTACAAGAATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTA-ACACTTTAATGG
837 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTCTAGACACTTTAATGG
* * *
16538259 CTACTGGCAGCAAGCCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTCA
1 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGA
16538324 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
65 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C
* * * * *
16538389 CCCCCGGCCCCCCCGATTGTCGGAACCCCAAAGCCGCCGGTCAGGTTCTCCGGCGTTGCTCTGAC
129 CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGAC
* * *
16538454 AATGGTGCCCCGACGAAGTAAAAATGCAGCACCAGCACATGCCCGAGTCTAGCATGTGCTGCCAC
194 AATGGTGCCCCGACGAAG-AAAAATGCGGCACCAACACATGCCCGAGCCTAGCATGTGCTGCCAC
* * *
16538519 AACCCTTGATCTTGTCCGATCTTACACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
258 AACCCTTGATCCTGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
* * * * * *
16538584 CCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCGCTCAGCCGGCCATAGGGGTAGGATG
323 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATG
* * * * * * * * ** *
16538649 TGCAAGCTGGGGATCGACCGGGTTCTCCTCTGCTTGCTGTCGATTCTACTGTCGTAACCCTCGGT
388 CGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCAATCCTACTACCGTAACCCTCGAT
* * **
16538714 CCAGTCTGATCTTAGACTGCGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGTA
453 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCG
* *
16538779 GGCGAGCGCGTCGGCACTACGTCGGCCAGCGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTG
518 GGCGGGCG-GTCGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTG
* * * *
16538844 GTAAGTGGGTTTGGGTACATCTTCATATTTCTGCATGCGAATGCCATTTTTATGGCTTGTAAATT
582 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
*
16538909 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
647 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTC
* * *
16538974 ACGATTTTTGAAAA-TTTTATGGTTCGAGATTTTTTAAAATTTTCTCAGAAA-GAGTTTTGGCCC
712 ACGA-TTTTCAAAACTTTTACGGTTCGAGATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGCCC
** * * *
16539037 CAAACTTTTTAGACGTGATCCTTGTATTTTTTTTGGTATGCACAAAAAAATTCAGCTAAAAACTC
775 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTC
*
16539102 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCTAGACACTTTAGTGG
840 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCTAGACACTTTAATGG
* *
16539163 CTACTAGCAACAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCTCGAGGTTTGA
1 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGA
* * * *
16539228 TGAGGGATAGGGGGCCAATATAAGGGCTAAGTACAAGCACCCATCGCACATCATGTGCGAACCCC
65 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-CAC
* * *
16539293 CCCCCGGCCCCCCCGATCGCCGGAACCCCAAAGCTGTCGGTCAGGTTCTCCGACGATGCT-TCGA
129 CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCT-GA
* * * *
16539357 CGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGTCC-AGCATGTGCTGTCG
193 CAATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAG-CCTAGCATGTGCTGCCA
* * * ** * *
16539421 CAACCC-TCAGTCCCGTCCAATCTTAGACTACGAATGAACTCCGTGTGCTTAGACTGGGAATGAA
257 CAACCCTTGA-TCCTGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAA
* * *
16539485 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGCCGACCAGAGGGGCAAGA
321 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGA
** ** * * *
16539550 TGCGCAAGCCGAAGATCGGTCAGGTCCCCCTCTGTGTGTTGCCAATCCTACTACCGTAACCCTCG
386 TGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCAATCCTACTACCGTAACCCTCG
* * * * * *
16539615 ATCTGGT-TCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACAGAC-GAA--A-CGT
451 ATCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGG
* * *** *
16539675 GCGGGC--G-GGTGGGCACTACGTCGGCCAGAGAGACAGGATGCACAAGTTATGGATCGATAGAG
515 GCGGGCGGGCGGTCGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGG
*** * *
16539737 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGCACCAATGACACTTTTTATGGCTTTTAA
580 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTTATGGCTTGTAA
* ** *
16539802 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTCTCATGTTAAGACAACTCATTTTCTATTT
644 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTT
* ** * * *
16539867 TTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGC
709 TTCACGATTTTCAAAAC-TTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC
16539932 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGTTCAGCCAAAAA
773 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCCAAAAA
* *
16539997 CTCAAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATT-TCAGACACTTTAATGG
837 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCT-AGACACTTTAATGG
* * *
16540061 CTACTGGTAGCAAACATGTAAAATCTCAAACGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGAT
1 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGAT
*
16540126 GAGGGATAGGGGGCCAATATAAGGGACAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
66 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* *
16540191 CCTGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--C-A-G--C-G---A
131 CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGACAA
* * * *
16540245 TGGTGCCTCGACGAAGAAAAATGCGACACCAACACATGCCCGAGCCTAGCATGTGCTGTCACCAC
196 TGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCTAGCATGTGCTGCCACAAC
* * * * *
16540310 CCTTGGT-CTGACCTGGTCTTAGACGGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
261 CCTTGATCCTGTCC-GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCC
* * * * *
16540374 GTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCA
325 GTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCG
* * * * * * ** *
16540439 CAAGCCGGGGATCGATCGGGGCCCCCTCTGCGTGTTGCCGATCCTGCTGCCACAACCCTCGATCT
390 CAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCAATCCTACTACCGTAACCCTCGATCC
* * *
16540504 GGTCTGATCTGAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
455 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGG
* * * * * *
16540569 CGGGCGGGCGGGCACTATGCCGGCCAGAGACACGGGATGCGCAAGCCGTGGATCGATAAGGTGGT
520 CGGGCGGTC-GGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGT
16540634 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
584 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
16540699 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
649 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAC
*
16540764 GATTTTCAAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTTTGCCCC
714 GATTTTCAAAAC-TTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGAAAGGAG-TTTTGGCCCC
* * * *
16540828 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAGATTCAGCTAAAAACTAG
776 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCG
* *
16540893 AAGTGTACATGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGG
841 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCTAGACACTTTAATGG
* * *
16540953 CTACTGGCAGCAATCTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA
1 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGA
*
16541018 TGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCGCACA--
65 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * *
16541081 ---C--CCCCACCGATCGCTAC--AACGCCAATGCCGTCGGTCAGGTTTTCTGACGATGCTCCGA
130 CCCCGGCCCCCCCGATCG-T-CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGA
* * * *
16541139 CGATGGTGCCCCAACAAAGAAAAATGCGGCACCAACACATGCCCGAGCCTAGCATGTGTTGCCAC
193 CAATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCTAGCATGTGCTGCCAC
* * *
16541204 AACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGATTGGGAATGAACT
258 AACCCTTGATCCTGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
* *
16541269 TCGCATGCCTAAGTCAACCCACGAAACGAGCG
323 CCGTATGCCTAAGTCAACCCACGAAACGAGCG
16541301 GGCAGGCAGG
Statistics
Matches: 2668, Mismatches: 319, Indels: 116
0.86 0.10 0.04
Matches are distributed among these distances:
884 6 0.00
885 258 0.10
886 38 0.01
887 1 0.00
888 3 0.00
889 9 0.00
890 1 0.00
891 4 0.00
892 234 0.09
893 227 0.09
894 1 0.00
895 95 0.04
896 131 0.05
897 308 0.12
898 109 0.04
899 6 0.00
900 1 0.00
902 5 0.00
903 358 0.13
904 411 0.15
905 309 0.12
906 17 0.01
907 57 0.02
908 40 0.01
909 39 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGACAA
TGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCTAGCATGTGCTGCCACAAC
CCTTGATCCTGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCG
TATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGC
AAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCAATCCTACTACCGTAACCCTCGATCCG
GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGC
GGGCGGTCGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGA
TTTTCAAAACTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCTAGACACTTTAATGG
Found at i:16540364 original size:26 final size:26
Alignment explanation
Indices: 16540327--16540379 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16540317 CTGACCTGGT
16540327 CTTAGACGGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
*
16540353 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
16540379 C
1 C
16540380 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCGTATG
Found at i:16541998 original size:26 final size:26
Alignment explanation
Indices: 16541962--16542014 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16541952 CCAGTTCGAT
16541962 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16541988 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16542014 C
1 C
16542015 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16542924 original size:26 final size:26
Alignment explanation
Indices: 16542873--16542925 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16542863 CTGGTCCGAT
* *
16542873 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16542899 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16542925 C
1 C
16542926 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16544467 original size:26 final size:26
Alignment explanation
Indices: 16544438--16544490 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16544428 CTAATCCGAT
16544438 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16544464 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16544490 C
1 C
16544491 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16545311 original size:903 final size:898
Alignment explanation
Indices: 16543560--16546270 Score: 3595
Period size: 877 Copynumber: 3.0 Consensus size: 898
16543550 CCGATTTGAT
* *
16543560 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTGCAGGTACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTGCGGGTGCTCAGT
* * * *
16543625 CGGGTAGAGGGGCGGGATGGGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
66 CGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGTTGCCGATCC
* *
16543690 TGCTGCCGA-AACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCA
131 TACTGCC-ACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *** *
16543754 ACCGACAAAACGAGCAGACGGGCGAAAGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
195 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
16543819 AGCCGTGGATCGATGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCAAATGCC
260 AGCCGTGGATCGATGGGGTGGTAGGT-GATTTAGGCACATCCTCATATTTCTGCATGCCAATGCC
*
16543884 ATTTTTACTGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
324 ATTTTTA-TGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
16543949 CGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTT
388 CGACTCG-TTTTTATTTTTCACGATTTTTGAAACTTTTT--GGTTCGGGATTTTTTAAAATTTTT
** * *
16544014 TTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTCTTTTTGGCATGCACAAA
450 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
16544079 AAAATTTC-GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
515 AAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
16544143 TCAGACACTTTATTGGCTACTGGCAGCAAACCAGTAAAATCTGAAATGCTCTTTAA-AGGGGTGT
579 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGA-GGGTGT
* * * * *
16544207 GAGTTCTTGAGGTTTGACGAGGGATAGAGGGCCAATATAGGGGCCAAGTACAAGCACCCATTGCA
643 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
16544272 TATCATGTGCGCACACCACCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTC
708 CATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCAT-TGTCAGGTTC
** * * * * *
16544337 TCCGACGATGCTCCGACGATGGTACATCGACAAAGAAAAATATGGCACCAACACATG-CCTGAGA
772 TCCGGTGATGCTCCGACGATGGTGCCTCGACGAAGAAAAATGTGGCACCAACACATGCCCT-AGC
* * * ** *
16544401 ACAGCATGTGCTGTCGTATCCCTCAATCTAATCCGATCTTAGACTGGGAATGAACTCCGTATG
836 CCAGCATGTGCTGTCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
16544464 CTTAGACTGGGAATGAATTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTGCTCA-A
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTGCGGGTGCTCAGT
* * * * *
16544528 CTGGCTAGAGGGGCGAGATGCGCAAGTCGGGGATCAATCGGGTCCCCCTCTGTGTGTTACCGATC
66 C-GGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGTTGCCGATC
* ** * * * *
16544593 CTACTACCACAACCCTCAGTCCAGTCTGATGTTAGGCTAGGAATGAACTCTGTATGCCTAAGCCA
130 CTACTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * ** * * *
16544658 ACCGATGAAATTAGTGGGCGGGCGGGCGGGCGGGCACTATACCGGCCAGAAAGATGGGATGCGTA
195 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*** * * * *
16544723 AGTTATGGATCGATGGGGTGGCAGGTGCATTTAGGCACATCCTCATATTTCTCCCTACCAATGCC
260 AGCCGTGGATCGATGGGGTGGTAGGTG-ATTTAGGCACATCCTCATATTTCTGCATGCCAATGCC
* *
16544788 ATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGGCTTCACGTGAAGTTTGATGGCAAGA
324 ATTTTTAT-GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
16544853 CGACTCGTTTTCTAGTTTTCATGATTTTTGAAACTTTTGTGGTTCGGGATTTTTTAAAATTTTTT
388 CGACTCGTTTT-TATTTTTCACGATTTTTGAAACTTTT-TGGTTCGGGATTTTTTAAAATTTTTT
* * *
16544918 CGGGAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCATGTATTTTTTTTGGCATGCACAAAA
451 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* * * *
16544983 AAATTCAGCTAAAAACTCAAAATGTACAAGATTTTGTGACCATTTGAATAAAGTGTCCCTATTTC
516 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
16545048 AGACGCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAG
581 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAG
*
16545113 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
646 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
16545178 CATGTGTGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCTAATGCCATTGATCAGGTTCTCC
711 CATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCATTG-TCAGGTTCTCC
* * * **
16545243 GGTGATGATCTGGA-GATGGTGCCTCGATGAAGAAAAATGCAGCACCAACACATGCCCTAGCCCA
775 GGTGATGCTC-CGACGATGGTGCCTCGACGAAGAAAAATGTGGCACCAACACATGCCCTAGCCCA
* *
16545307 GCATGTGCTGTCGCAACCCTCGGTCTGATCCGATCTTGGACTGGGAAAGAA---C---T-
839 GCATGTGCTGTCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
16545360 C-T-G-C---------A-----T-T-CCTAAGTCAACCCACGAAACGAA-TGTGCGGGTGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-AAGTGTGCGGGTGCTCAG
**
16545405 TCGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCCACGTGTTGCCGATC
65 TCGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGTTGCCGATC
* * * *
16545470 CTACTGCCGCAACCCTCGGTCTGGT-TCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
130 CTACTGCCACAACCCTCAGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
16545534 AACCGACGAAACGAGCGGGCAGGCAGGCAGGCTGGCACTACGCTGGTCAGAGAGACGGGATGCGC
194 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* ** *
16545599 AAGCCGTGTATCGATACGGTGGTAGGTGAGTTTAGGCACATCCTCATATTTCTGCGTGCCAATGC
259 AAGCCGTGGATCGATGGGGTGGTAGGTGA-TTTAGGCACATCCTCATATTTCTGCATGCCAATGC
*
16545664 CATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
323 CATTTTTAT-GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
16545729 ACAACTCATTTATTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGAATTTTTTAAAATTT
387 ACGACTCGTTT-TTATTTTTCACGATTTTTGAAAC-TTTT-TGGTTCGGG-ATTTTTTAAAATTT
* * *
16545794 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTGTTGGCAAGCACA
448 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
* *
16545859 AAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCAT
513 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
16545924 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGT
578 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGT
* * * *
16545989 GAGTTCTCGAGGTTTGATGACGAATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
643 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * **
16546054 CATCATGTGCGCACA-CCCCCTGG-CCCCCCGATCTCCGGAACCCCAATGCCGCCTGTCAGGTTC
708 CATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCC-ATTGTCAGGTTC
* * * *
16546117 TCCGGTGATGCTCCGACGATCGTGCCCCGGCGAAGAAAAATGTGGCACCAACACATGCCCGAGCC
772 TCCGGTGATGCTCCGACGATGGTGCCTCGACGAAGAAAAATGTGGCACCAACACATGCCCTAGCC
* * * * * * *
16546182 CAGCATGTACTGCCACAACCCTCGGCCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
837 CAGCATGTGCTGTCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
*
16546244 CTTCGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
16546271 TTCGACTGGG
Statistics
Matches: 1559, Mismatches: 202, Indels: 93
0.84 0.11 0.05
Matches are distributed among these distances:
876 4 0.00
877 462 0.30
878 27 0.02
879 271 0.17
880 1 0.00
883 1 0.00
884 2 0.00
885 1 0.00
886 1 0.00
887 1 0.00
893 1 0.00
894 1 0.00
895 1 0.00
896 2 0.00
897 1 0.00
900 1 0.00
901 1 0.00
902 5 0.00
903 410 0.26
904 364 0.23
905 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTGCGGGTGCTCAGT
CGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGTTGCCGATCC
TACTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATGGGGTGGTAGGTGATTTAGGCACATCCTCATATTTCTGCATGCCAATGCCAT
TTTTATGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTTATTTTTCACGATTTTTGAAACTTTTTGGTTCGGGATTTTTTAAAATTTTTTCGGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTT
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCATTGTCAGGTTCTCCGGTGAT
GCTCCGACGATGGTGCCTCGACGAAGAAAAATGTGGCACCAACACATGCCCTAGCCCAGCATGTG
CTGTCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:16546258 original size:26 final size:26
Alignment explanation
Indices: 16546222--16546296 Score: 141
Period size: 26 Copynumber: 2.9 Consensus size: 26
16546212 TCTGATCTTA
16546222 GACTGGGAATGAACTCCGTATGCTTC
1 GACTGGGAATGAACTCCGTATGCTTC
16546248 GACTGGGAATGAACTCCGTATGCTTC
1 GACTGGGAATGAACTCCGTATGCTTC
*
16546274 GACTGGGAATGAACTCCATATGC
1 GACTGGGAATGAACTCCGTATGC
16546297 CTAAGCCAAC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (26 bp):
GACTGGGAATGAACTCCGTATGCTTC
Found at i:16547736 original size:262 final size:263
Alignment explanation
Indices: 16547264--16547795 Score: 858
Period size: 262 Copynumber: 2.0 Consensus size: 263
16547254 TCATATTTCT
* *
16547264 GTGT-CCC-AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGA
1 GTGTCCCCAAATGCCATTTTTATAGCTTGTAAATTCATACAATGGGCCCTTAAGCCTTCACATGA
* *
16547327 AGTTTCACGGCAAAACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTAAGGTTCGGGA
66 AGTTCCACGGCAAAACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTAAGGTTCAGGA
16547392 TTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
131 TTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
*
16547457 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATATG-AAA
196 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATATGAAAA
16547521 AAA
261 AAA
* *
16547524 GTGTCCCCAAATGCCATTTTTATATCTTGTAAATTCATACAATGGGCCCTTAAGCCTTCACGTGA
1 GTGTCCCCAAATGCCATTTTTATAGCTTGTAAATTCATACAATGGGCCCTTAAGCCTTCACATGA
* ** *
16547589 AGTTCCATGG-AAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGG
66 AGTTCCACGGCAAA-ACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTAAGGTTCAGG
** * **
16547653 ATTTTTAAAAATTTTTTTGGAAGTAGTTTTGGCCGTAAACTTGGTAGACGTGATCCTTGT-TTTT
130 ATTTTT-AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
*
16547717 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAA
194 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATATGAA
16547782 AAAAA
259 AAAAA
16547787 GTGTCCCCA
1 GTGTCCCCA
16547796 TTTCAGACAC
Statistics
Matches: 250, Mismatches: 17, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
260 4 0.02
261 6 0.02
262 177 0.71
263 63 0.25
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (263 bp):
GTGTCCCCAAATGCCATTTTTATAGCTTGTAAATTCATACAATGGGCCCTTAAGCCTTCACATGA
AGTTCCACGGCAAAACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTAAGGTTCAGGA
TTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATATGAAAA
AAA
Found at i:16549168 original size:59 final size:57
Alignment explanation
Indices: 16549097--16549551 Score: 544
Period size: 59 Copynumber: 7.7 Consensus size: 57
16549087 TTTTGTAGGA
16549097 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAATTTCGATTT-TCAAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAATTT--ATTTCT-AAGG
*
16549156 AAAATTGATACTTTCAACTTTT-CCTCAAAAACCCCCTTTTTTTTTGAAAATTTATTTCTAAGG
1 AAAATTGATACTTTCAACTTTTCCCT-AAAAA------TATTTTTTGAAAATTTATTTCTAAGG
* *
16549219 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGGAAATTTCGATTT-TCAAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATA--TTTTTTGAAAATTT--ATTTCT-AAGG
16549280 AAAATTGATACTTTCAACTTTT-CCTCAAAAACCCT-TTTTTTGAAAATTTATTTCTAAGG
1 AAAATTGATACTTTCAACTTTTCCCT-AAAAA---TATTTTTTGAAAATTTATTTCTAAGG
* * * *
16549339 AAAATTGATACTTTCAACTTTTCCC-CAAAATAGTTTTTGGAATTTTATTTCTAAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAATTTATTTCTAAGG
* ** *
16549395 AAAATTGATACTTTCAACTTTTCCCTAAAAATGTTTTTTTTTTTAAATTTATTTCTGAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAA---TATTTTTTGAAAATTTATTTCTAAGG
* *
16549455 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAATTTATTTCTAAGG
16549512 AAAATTGATACTTTCAACTTTTCCCTAAAAATATATTTTT
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATAT-TTTTT
16549552 TTTGGAATTT
Statistics
Matches: 347, Mismatches: 23, Indels: 53
0.82 0.05 0.13
Matches are distributed among these distances:
55 1 0.00
56 46 0.13
57 60 0.17
58 12 0.03
59 70 0.20
60 56 0.16
61 48 0.14
63 35 0.10
64 4 0.01
65 15 0.04
ACGTcount: A:0.33, C:0.15, G:0.08, T:0.44
Consensus pattern (57 bp):
AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAATTTATTTCTAAGG
Found at i:16549523 original size:117 final size:118
Alignment explanation
Indices: 16549097--16549555 Score: 646
Period size: 117 Copynumber: 3.9 Consensus size: 118
16549087 TTTTGTAGGA
* *
16549097 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAATTTCGATTTTCAAGGAAAATT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTC-ATTTTCAAGGAAAATT
*
16549162 GATACTTTCAACTTTTCCTCAAAAACCCCCTTTTTTTTTGAAAATTTATTTCTAAGG
65 GATACTTTCAACTTTTCCTCAAAAA---TCTTTTTTTTTGAAAATTTATTTCTAAGG
16549219 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGGAAATTTCGATTTTCAAGGAAAA
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTGGAAATTTC-ATTTTCAAGGAAAA
**
16549284 TTGATACTTTCAACTTTTCCTCAAAAA-CCCTTTTTTTGAAAATTTATTTCTAAGG
63 TTGATACTTTCAACTTTTCCTCAAAAATCTTTTTTTTTGAAAATTTATTTCTAAGG
* *
16549339 AAAATTGATACTTTCAACTTTTCCCC-AAAATAGTTTTTGG-AATTTTA-TTTCTAAGGAAAATT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTCATTTTC-AAGGAAAATT
* ** *
16549401 GATACTTTCAACTTTTCC-CTAAAAATGTTTTTTTTTTTAAATTTATTTCTGAGG
65 GATACTTTCAACTTTTCCTC-AAAAATCTTTTTTTTTGAAAATTTATTTCTAAGG
16549455 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTT-A-TTTCTAAGGAAAATT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTCATTTTC-AAGGAAAATT
*
16549518 GATACTTTCAACTTTTCC-CTAAAAATATATTTTTTTTG
65 GATACTTTCAACTTTTCCTC-AAAAATCT-TTTTTTTTG
16549556 GAATTTTTTT
Statistics
Matches: 314, Mismatches: 15, Indels: 20
0.90 0.04 0.06
Matches are distributed among these distances:
114 5 0.02
115 34 0.11
116 53 0.17
117 63 0.20
118 13 0.04
119 6 0.02
120 52 0.17
122 32 0.10
124 56 0.18
ACGTcount: A:0.33, C:0.15, G:0.08, T:0.44
Consensus pattern (118 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTCATTTTCAAGGAAAATTG
ATACTTTCAACTTTTCCTCAAAAATCTTTTTTTTTGAAAATTTATTTCTAAGG
Found at i:16550025 original size:20 final size:20
Alignment explanation
Indices: 16550000--16550037 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
16549990 GAACACCGGT
*
16550000 GCCGGATTCTGGAAATTTTC
1 GCCGGAATCTGGAAATTTTC
16550020 GCCGGAATCTGGAAATTT
1 GCCGGAATCTGGAAATTT
16550038 CACCGGAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (20 bp):
GCCGGAATCTGGAAATTTTC
Found at i:16550043 original size:19 final size:20
Alignment explanation
Indices: 16550001--16550045 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
16549991 AACACCGGTG
* *
16550001 CCGGATTCTGGAAATTTTCG
1 CCGGAATCTGGAAATTTTCA
16550021 CCGGAATCTGGAAA-TTTCA
1 CCGGAATCTGGAAATTTTCA
16550040 CCGGAA
1 CCGGAA
16550046 GTTGGCCGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (20 bp):
CCGGAATCTGGAAATTTTCA
Found at i:16550144 original size:31 final size:31
Alignment explanation
Indices: 16550098--16550168 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
16550088 ACTGGGCAGG
* ** * *
16550098 TCGCCGGAAACTTCAATGTTGGCCGGAATTT
1 TCGCCGGAAAATTCAAACTTCGCCGAAATTT
*
16550129 TCGTCGGAAAATTCAAACTTCGCCGAAATTT
1 TCGCCGGAAAATTCAAACTTCGCCGAAATTT
16550160 TCGCCGGAA
1 TCGCCGGAA
16550169 TCTGGAAATT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (31 bp):
TCGCCGGAAAATTCAAACTTCGCCGAAATTT
Found at i:16550216 original size:26 final size:24
Alignment explanation
Indices: 16550177--16550230 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
16550167 AATCTGGAAA
*
16550177 TTTCCCAGAAATTTCCAGAAAAAAT
1 TTTCCCAAAAATTTCCA-AAAAAAT
* *
16550202 TTTCGCCAAAAATTTCTAAAAAATT
1 TTTC-CCAAAAATTTCCAAAAAAAT
16550227 TTTC
1 TTTC
16550231 TCACTCCCAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.41, C:0.19, G:0.06, T:0.35
Consensus pattern (24 bp):
TTTCCCAAAAATTTCCAAAAAAAT
Found at i:16550556 original size:16 final size:16
Alignment explanation
Indices: 16550535--16550566 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
16550525 AAGACAAATC
*
16550535 AAAAAATATATTATAA
1 AAAAAATATATGATAA
16550551 AAAAAATATATGATAA
1 AAAAAATATATGATAA
16550567 TCAGGAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (16 bp):
AAAAAATATATGATAA
Found at i:16550678 original size:8 final size:8
Alignment explanation
Indices: 16550635--16550706 Score: 51
Period size: 9 Copynumber: 8.6 Consensus size: 8
16550625 AAATCTAATC
16550635 TAATAAAA
1 TAATAAAA
*
16550643 AAAT-AAA
1 TAATAAAA
16550650 TAA-ATAAA
1 TAATA-AAA
16550658 TATATACATAA
1 TA-ATA-A-AA
16550669 TAATAAAA
1 TAATAAAA
16550677 TACATAAAA
1 TA-ATAAAA
16550686 TACATAAAA
1 TA-ATAAAA
*
16550695 T-ACAAAA
1 TAATAAAA
16550702 TAATA
1 TAATA
16550707 CAGGACAAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
7 11 0.21
8 14 0.27
9 18 0.35
10 5 0.10
11 4 0.08
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.25
Consensus pattern (8 bp):
TAATAAAA
Found at i:16550685 original size:9 final size:9
Alignment explanation
Indices: 16550667--16550708 Score: 59
Period size: 9 Copynumber: 4.7 Consensus size: 9
16550657 ATATATACAT
16550667 AATA-ATAA
1 AATACATAA
16550675 AATACATAA
1 AATACATAA
16550684 AATACATAA
1 AATACATAA
*
16550693 AATACAAAA
1 AATACATAA
16550702 TAATACA
1 -AATACA
16550709 GGACAAATTG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
8 4 0.13
9 21 0.68
10 6 0.19
ACGTcount: A:0.69, C:0.10, G:0.00, T:0.21
Consensus pattern (9 bp):
AATACATAA
Found at i:16550692 original size:18 final size:19
Alignment explanation
Indices: 16550665--16550708 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
16550655 AAATATATAC
*
16550665 ATAATA-ATAAAATACATA
1 ATAATACATAAAATACAAA
16550683 A-AATACATAAAATACAAA
1 ATAATACATAAAATACAAA
16550701 ATAATACA
1 ATAATACA
16550709 GGACAAATTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 4 0.17
18 13 0.57
19 6 0.26
ACGTcount: A:0.68, C:0.09, G:0.00, T:0.23
Consensus pattern (19 bp):
ATAATACATAAAATACAAA
Found at i:16551218 original size:26 final size:26
Alignment explanation
Indices: 16551182--16551234 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16551172 GCAGTCTGAT
*
16551182 CTTATACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
16551208 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16551234 C
1 C
16551235 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16552826 original size:26 final size:26
Alignment explanation
Indices: 16552797--16552849 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16552787 CCGGTCCGAT
16552797 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16552823 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16552849 C
1 C
16552850 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16553728 original size:26 final size:26
Alignment explanation
Indices: 16553699--16553751 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16553689 CCAGTCCGAT
16553699 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16553725 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16553751 C
1 C
16553752 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16553982 original size:902 final size:899
Alignment explanation
Indices: 16552184--16554416 Score: 3845
Period size: 902 Copynumber: 2.5 Consensus size: 899
16552174 ATGCGCAAGT
* *
16552184 CGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
1 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TGCGTGCCAATGCCATT
*
16552249 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGG
65 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* **
16552314 CTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTTGGGA-TTTTTTAAACTTTTTTT
130 CTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTTAAA--TTTTTT
* *
16552378 GGAAGTATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTACTTTTT-TTGGCATGCACAAAA
193 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAA
16552442 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
257 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
16552507 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAG
322 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAG
16552572 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAACGCACAT
387 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAACGCACAT
16552637 CATGTGCGCACACCCCCACCCCCCCGATCGTCAGAACCCCAATGCCGCTGGTCAGGTTCTCCGAC
452 CATGTGCGCACACCCCCACCCCCCCGATCGTCAGAACCCCAATGCCGCTGGTCAGGTTCTCCGAC
16552702 GATGCTCCGACGATGGTGCCCGGATGAAGAAAAATGCTGCACCAACACATGCTCAAGCCCAGCAT
517 GATGCTCCGACGATGGTGCCCGGATGAAGAAAAATGCTGCACCAACACATGCTCAAGCCCAGCAT
*
16552767 GTGCTGTCGAAACCATAGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
582 GTGCTGTCGAAACCATAGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
*
16552832 GGAATGAACTTCGTATGCCTAAGTCAACTCACGAAACGAGCGTGCGGGTGCTTAGCCGGCCAGAG
647 GGAATGAACTTCGTATGCCTAAGTCAACTCACGAAACAAGCGTGCGGGTGCTTAGCCGGCCAGAG
16552897 GGGCGGGATGTGCAAGCCGGGGATCGATCGGGTCCCCCTTTGTATCCTACCGATCCTGCTGCTGC
712 GGGCGGGATGTGCAAGCCGGGGATCGATCGGGTCCCCCTTTGTATCCTACCGATCCTGCTGCTGC
16552962 AACCCTCGGTCTGGTCTGATCCTAGACTAGGAACAAACTCCATATGCCTAAGCCAACCGATGAAA
777 AACCCTCGGTCTGGTCTGATCCTAGACTAGGAACAAACTCCATATGCCTAAGCCAACCGATGAAA
16553027 CGAGCGGGCGGGCGATTGAGCGGGCACTACGTCGGCCAGAGAGATGGGATACGCATGC
842 CGAGCGGGCGGGCGATTGAGCGGGCACTACGTCGGCCAGAGAGATGGGATACGCATGC
16553085 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAGTTTTGCGTGCCAATGCCATT
1 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTTGCGTGCCAATGCCATT
* *
16553150 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGA
65 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * ** *
16553215 CTCATTTTTTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCAACATTTTTTTTAATGTTTTTG
130 CTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTTAAAT-TTTTTG
***
16553280 GAAGGAGTTTTGGAAACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
194 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
16553345 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
259 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
16553410 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTT
324 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTT
16553475 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAACGCACATCA
389 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAACGCACATCA
* *
16553540 TGTGCGCACACCCCCCACCCCCCCGATCGTCAGAACCCCATTGCCGGTGGTCAGGTTCTCCGACG
454 TGTGCGCACA-CCCCCACCCCCCCGATCGTCAGAACCCCAATGCCGCTGGTCAGGTTCTCCGACG
*
16553605 ATGCTCTGACGATGGTGCCCGGATGAAGAAAAATGCTGCACCAACACATGCTCAAGCCCAGCATG
518 ATGCTCCGACGATGGTGCCCGGATGAAGAAAAATGCTGCACCAACACATGCTCAAGCCCAGCATG
16553670 TGCTGTCGAAACCATAGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
583 TGCTGTCGAAACCATAGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
16553735 GAATGAACTTCGTATGCCTAAGTCAACTCACGAAACAAGCGTGCGGGTGCTTAGCCGGCCAGAGG
648 GAATGAACTTCGTATGCCTAAGTCAACTCACGAAACAAGCGTGCGGGTGCTTAGCCGGCCAGAGG
*
16553800 GGCGGGATGTGCAAGCCGGGGATTGATCGGGTCCCCCTTTGTATCCTACCGATCCTGCTGCTGCA
713 GGCGGGATGTGCAAGCCGGGGATCGATCGGGTCCCCCTTTGTATCCTACCGATCCTGCTGCTGCA
16553865 ACCCTCGGTCTGGTCTGATCCTAGACTAGGAACAAACTCCATATGCCTAAGCCAACCGATGAAAC
778 ACCCTCGGTCTGGTCTGATCCTAGACTAGGAACAAACTCCATATGCCTAAGCCAACCGATGAAAC
16553930 GAGCGGGCGGGCGATTGAGCGGGCACTACGTCGGCCAGAGAGATGGGATACGCATGC
843 GAGCGGGCGGGCGATTGAGCGGGCACTACGTCGGCCAGAGAGATGGGATACGCATGC
* * *
16553987 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTACAAATGCCATT
1 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTTGCGTGCCAATGCCATT
* *
16554052 TTTATGGCCTGTAAATTCTTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
65 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* ** *
16554117 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCG
130 CTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTTAAATTTTTT-G
* * * * * *
16554182 AGACGGGGTTTGGGCCCCAAACTTGGTAAGACATGATTCGTTGTAATTTTGTTTGGCAATGCACA
194 -GAAGGAGTTTTGGCCCCAAACTTGGT-AGACGTGA-TCCTTGTATTTTTG-TTGGC-ATGCACA
* *
16554247 AAGAAATTCAGCTAAAAACTCTAAGTGGTAACAAGATTTTGTG-CCATTTG-AAAAAGTGTCCCC
254 AAAAAATTCAGCTAAAAACTCAAAGT-GT-ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
16554310 ATTTCAGACACTTTAATGGCTACT-GCAGCAAACCTGTTAAAAT-TCAAAATGCTCTTTAA-GGG
317 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG-TAAAATCT-AAAATGCTCTTTAAGGGG
*
16554372 GTGTGAGTT-TCTGAGGTTTGATGA-GGATAGGGTGCCAATATAAGG
380 GTGTGAGTTCTC-GAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
16554417 TTCAGTACCG
Statistics
Matches: 1262, Mismatches: 54, Indels: 28
0.94 0.04 0.02
Matches are distributed among these distances:
900 6 0.00
901 430 0.34
902 613 0.49
903 20 0.02
904 7 0.01
905 34 0.03
906 42 0.03
907 88 0.07
908 9 0.01
909 13 0.01
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (899 bp):
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTGCGTGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTTAAATTTTTTGGA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAACGCACATCATG
TGCGCACACCCCCACCCCCCCGATCGTCAGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATG
CTCCGACGATGGTGCCCGGATGAAGAAAAATGCTGCACCAACACATGCTCAAGCCCAGCATGTGC
TGTCGAAACCATAGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
TGAACTTCGTATGCCTAAGTCAACTCACGAAACAAGCGTGCGGGTGCTTAGCCGGCCAGAGGGGC
GGGATGTGCAAGCCGGGGATCGATCGGGTCCCCCTTTGTATCCTACCGATCCTGCTGCTGCAACC
CTCGGTCTGGTCTGATCCTAGACTAGGAACAAACTCCATATGCCTAAGCCAACCGATGAAACGAG
CGGGCGGGCGATTGAGCGGGCACTACGTCGGCCAGAGAGATGGGATACGCATGC
Found at i:16554622 original size:23 final size:25
Alignment explanation
Indices: 16554584--16554629 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
16554574 CAAACATGTG
16554584 CTGTATGCCTAGACT-GGAATGACT
1 CTGTATGCCTAGACTGGGAATGACT
16554608 CTGTATG-CTAGACTGGGAATGA
1 CTGTATGCCTAGACTGGGAATGA
16554630 AAACTGTAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (25 bp):
CTGTATGCCTAGACTGGGAATGACT
Found at i:16556718 original size:26 final size:26
Alignment explanation
Indices: 16556682--16556733 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16556672 CAGCCCGATA
*
16556682 TTAGACTGGGAATTAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
16556708 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
16556734 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:16557597 original size:26 final size:26
Alignment explanation
Indices: 16557561--16557613 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16557551 GTTGACTTAG
16557561 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
16557587 GCATATGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16557613 G
1 G
16557614 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16558480 original size:26 final size:26
Alignment explanation
Indices: 16558451--16558503 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16558441 GTTGACTTAG
*
16558451 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
16558477 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
16558503 G
1 G
16558504 ATCGGACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:16560241 original size:26 final size:26
Alignment explanation
Indices: 16560205--16560257 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16560195 GTTGACTTAG
* *
16560205 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTAATTCCCAGTCTAA
16560231 GCATAAGGAGTTAATTCCCAGTCTAA
1 GCATAAGGAGTTAATTCCCAGTCTAA
16560257 G
1 G
16560258 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTAATTCCCAGTCTAA
Found at i:16562003 original size:26 final size:26
Alignment explanation
Indices: 16561973--16562025 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16561963 GTTGACTTAG
16561973 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
*
16561999 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
16562025 G
1 G
16562026 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:16562904 original size:26 final size:26
Alignment explanation
Indices: 16562868--16562918 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
16562858 GTTGACTTAG
16562868 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16562894 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
16562919 TGATTGGACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16563001 original size:895 final size:893
Alignment explanation
Indices: 16557003--16565165 Score: 10426
Period size: 893 Copynumber: 9.2 Consensus size: 893
16556993 TCTTCATATT
* * *
16557003 TCTGAAAGGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA
1 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* *
16557068 TTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
66 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCCTT
* * * * * *
16557133 CCGAAATAATTTGAAAAAATCCCAAACCGCAAAAAGATTCGAAAATCGTTAAAAATAGAAAACGA
131 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
*
16557198 GTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-A
196 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* **
16557262 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACAAACCTACCACCCTATCGATCCAC
261 AAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
16557327 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCGCTCGCCCGCCCGCCCGCTCGTTTCGTC
326 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTA-----G-T-GCCCGCCCGCCCGCTCGTTTCGTC
* * * * * *
16557392 GGTTGGCTTAGTCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGG-CCGAGGGTTGAGGCA
384 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGGATCGAGGGTTGCGACA
* * * ** * * *
16557456 GCAGGATCGGTAGCATGCA-AAGGGGACCCGGTCGATCCCCGGATTACGCATCCCGCCCCTCTGG
448 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGG
* * * * *
16557520 CCAGCTAAGCGCCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
513 CCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * *
16557585 AAGCATATGGAGTTCTTTCCCAGTCTAAGATCGGACCGGGCCGAGGGTTACGGCAGCACATGCTT
578 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTG
* * *
16557650 GGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCG-TCGGGGCACCATCGCCGG-GCCATCGCCG
643 GGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCT-GGGGCACCATCGCCGGAG-CATCACCG
* * *
16557713 GAGAACCTGACCGGTGGCTTTGGGGTTCCG-TCGATTGGGGGGCCGGGGGGTGTGCGCACATGAT
706 GAGAACCTGACCGGCGGCATTGGGGTTCCGAT-GATCGGGGGGCCGGGGGGTGTGCGCACATGAT
* * * * *
16557777 GTGTGATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCTAGAGCT
770 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
16557842 AACACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTG
835 CACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
16557902 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
1 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *
16557967 TGTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCAT
66 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCCTT
* * * *
16558032 CTGAAAAAATTTTAAAAAAT-CCTAAGCCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACG
131 CCGAAAAAATTTTAAAAAATCCCGAA-CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* *
16558096 AGTCGTCTTGCCATTAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
195 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
***
16558161 AAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
260 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * ** * * *
16558226 CGGCTTGTGCATCCCGTCTCTTTAGCCGATATAGT----GCCCGTCTGCTCGTTTCATCGGTTGG
325 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * *
16558287 CTTAGGCATACGTAGTTCATTCCCAGTCTAAGATCGGACCAGA-CTGAGGGTTGCGGCAGCAGGA
390 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGACAGCAGGA
* * * * *
16558351 TCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCACATCCCACCCCTCTGGCCGGCT
454 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* ** * *
16558416 GAGCGCCCTTACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
519 GAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * * *
16558481 ACGGAGTTAATTCCCAGTCTAAGATCGGACTGAACCGAGTGTTGTGGCAGCACATGCTGGGCTCG
584 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCG
* * ** ** * * * * *
16558546 GGCATGTGCTGGTACCATATTTTTCTTCGCCAGGCCACCATCGTCGAAGTATCACCAGAGAACCT
649 GGCATGTGTTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCACCGGAGAACCT
* * * *
16558611 GACCGACGGCATTGAGGTTCC-AGTGATCGGGGGGGTCGGGCGGGGTGTGCGCACATGATGTGTG
714 GACCGGCGGCATTGGGGTTCCGA-TGATC-GGGGGG-CCGG-GGGGTGTGCGCACATGATGTGCG
*
16558675 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCGAGAACTCACAC
775 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-
* *
16558740 CCCCTTAAAGAGCATTTCAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTG
839 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * * *
16558795 TCTGAAATAGGAACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTTGAGTTTTTAGTTGAA
1 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *
16558860 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTCGGGCCAAAAATCCTT
66 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCCTT
* * *
16558925 CCAAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAA
131 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* ***
16558990 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAATTATAA
196 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* ** ** *
16559055 ATATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACTAACCTACCACCCTATCGATCCAT
261 AAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
*
16559120 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGT
326 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-CC-GCCCGCTCGTTTCGTCGGT
* *
16559185 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATAGAGGGTT------GC-G
387 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAG
** * * *
16559243 G-T----AGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCTGG
452 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGG
* *
16559303 CTGAGCACCCGCACG---G--TCAT---TT--C----G--T--GG-GTTGA----C--T-TACGC
517 CTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* **
16559342 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAACAAGGGTTGCGGCATTACATGCTGGGCT
582 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCT
* * *
16559407 CGGGCATGTGTTGGTGCCGTATTTTTCTTCG-TCGAGGCACCATCGCCGGAGCATCACCGAAGAA
647 CGGGCATGTGTTGGTGCCGCATTTTTCTTCGCT-GGGGCACCATCGCCGGAGCATCACCGGAGAA
* * * **
16559471 CCTGACCGGTGGCATTGTGGTTCCGATGATCGGAGGGCCTGGGGAAGGGGTGTGCAG-ACAAAAT
711 CCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGCC---GG--GGGGTGTGC-GCACATGAT
* *
16559535 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACT
770 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
16559600 CACACCCCCTTACAG-GTAATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTG
835 CACA-CCCCTTAAAGAG-CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
16559660 TCTGAAATGGGGACAAC-TTTTTCAAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGA
1 TCTGAAATGGGGAC-ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * * *
16559724 ATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCA
65 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCCT
* * * *
16559789 TCTGAAAAAATTTTAAAAAAT-CCTAAGCCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAAC
130 TCCGAAAAAATTTTAAAAAATCCCGAA-CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* *
16559853 GAGTCGTCTTGCCATTAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
194 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* ***
16559918 AAAATTGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
259 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * *
16559983 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGGCCGCCCGCCCGCCTGCTCGTTTTGTCG
324 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCGCTCGTTTCGTCG
** * * * * *
16560048 GTTATCTTAGGGATACAGAGTTCATTTCCAGTCTAAGATCAGACC-AAACTGAGGGTT-------
385 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGACAG
* * * *
16560105 ---G--CGGCAGCATGCAGAGGGGGACCCGGCCGAT-CCTCGGCTTGCGCATCCTGCCCCTTTGG
449 CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGG
* * * * *
16560164 TCGGCTAAGCTCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
513 CCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
16560229 AAGCATAAGGAGTTAATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCATATGCTG
578 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTG
* * * * ** **
16560294 GGCTCTGGCATGTGTTGGTGCCAC-TTATTTCTTC-ATCGGGGCACCATCACCGGATTATCGTCG
643 GGCTCGGGCATGTGTTGGTGCCGCATT-TTTCTTCGCT-GGGGCACCATCGCCGGAGCATCACCG
* * * * * *
16560357 GAGAACCTGACCGACGGCATTGTGGTTCAGGTAATCGGGGGGCCAGGGGGAGGGGTGTGCACACA
706 GAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGCC----GG-GGGGTGTGCGCACA
* * *
16560422 TGATGTGCGATGGGTGATGGTACTTGGCCCTTATATTCGCCCCCTAT-CCTCATCAAACCTCAAG
766 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
16560486 AACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAGTG
831 AACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * * * *
16560548 TCTGAAATGAGGACACTTTTTTCAAATGCTCATAAAATGTTGTACACTTCGCGTTTTTACCTGAA
1 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* ** *
16560613 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCGTGT-ATAACAAGTTTGGGGCCAAAACTCCT
66 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCA-ACCAAGTTTGGGGCCAAAACTCCT
**
16560677 TCCGAAAAAATTTTAAAAAATCCCGAAGTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
130 TCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
*
16560742 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAA
195 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
**
16560807 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
260 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * *
16560872 TGGCTTGCGCATCTCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGTCTGCTCATTTCGTCGG
325 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CC--C-GCTCGTTTCGTCGG
* *
16560937 TTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGC-AGCAGC
386 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGA-CAGC
* * * * * *
16561001 AGGATCGGTAGCATGTAGAGGGGCACCC-AGCCGATCCCCT-GCTTGCGCATCCTGCCCCTCTAG
450 AGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGAT-CCCTGGCTTGCGCATCCCGCCCCTCTGG
* * * *
16561064 CCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAAACAGAGTTCATTCCCGGTCT
513 CCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* *
16561129 AAG-AT-C--AG---A----C---C----A---GA-CTG----AGGGTTGCGACAGCACATGCTG
578 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTG
* * * * * *
16561168 GGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACTATCGTCGGAGCATCGCCGAA
643 GGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCACCGGA
** * **
16561233 GAACCTGACCGATGGCATTGGGGTTTCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
708 GAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
16561298 CGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
773 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
16561363 ACGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCCTTAAAGTG
838 AC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * ** * * * *
16561420 TCTAAAATGGGGACACTTTTTTCAAATGGCCGTAAAATCCTGTACACATCAAGTTTTTACCTGAA
1 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *
16561485 TTTTTTTGTGTATGCCAACAAAAATACAGGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTT
66 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCCTT
* * ** *
16561550 CAGAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGG
131 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* * * *
16561615 GTTGTCTTGGCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAA
196 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
** *
16561680 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCAC
261 AAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* ** * * *
16561745 AGCTTGCGCATCCCGTCTCTCTGGTTGACGCAGTGCCCGCCTGCCCGCTCTTTTCGTCGGTTGGC
326 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * **
16561810 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCAGGATC
391 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATC
* * * * * * *
16561875 GGCAGCACGCAGAGGGGGACCCGATCGAACAAC-GGCTTCCGCATCCCACCCTTCTGGCCGGTTG
456 GGCAGCACGCAGAGGGGGACCCGACCGATC-CCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
16561939 AGCACCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGCAGTTCATTCCCAGTCTAAGCATA
520 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
** * * *
16562004 CGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCAAGGGTTACGGTAGCACATGCTGGGCCCGG
585 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGG
* * * *
16562069 GCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGG-GTTATCATCGGAGAACCT
650 GCATGTGTTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCGGAG-CATCACCGGAGAACCT
* * * *
16562133 GACCGGCGGCATTGGGGTTTCGATGTTCGGGGGGGCCAAGGGGGTGTGCGCACATGATGTGTGAT
714 GACCGGCGGCATTGGGGTTCCGATGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGAT
16562198 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCT
777 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-
*
16562263 CCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
841 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
16562316 TATGAAATGGGGACACTTTTTTCAAATGGTCACTAAATCTTGTACACTTGGAGTTTTTAGCT-AA
1 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *
16562380 ATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTTGGCCCAAAAATCCTT
66 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCCTT
* * * ** * *
16562445 CCGAAATAATTTTAAAAAATCTCGAACCGCAAAATGTTTTGAAAATCATGAAAAATAGAAAACGT
131 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
*
16562510 GTCGTCTTGCCATGAAACTTCACGTGGAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
196 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
*
16562575 AAATGGCATTGGTACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
261 AAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * *
16562640 GGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCTCTCGCCCGCTCATTTCGTCGGTTCGC
326 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * *
16562705 TTAGGCATACGGAGTTCATTCCCAATCTAAGAT-TGTACCGGATCGAGGGTTGCGACAACAAGAT
391 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGATCGAGGGTTGCGACAGCAGGAT
16562769 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
455 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
*
16562834 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
520 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * ** * *
16562899 CGGAGTTCATTCCCAGTCTATGATTGGACTAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGG
585 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGG
* * * * **
16562964 GCATGTGTTGGTGCCACATTTTTCTTTGCTAGGGCACCATCGCCGGAGCATCGCTTGAGAACCTG
650 GCATGTGTTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCACCGGAGAACCTG
* * * * * *
16563029 ATCAGCGGCATTGGGGTTCCGATGATTGGGGGGACGGGGGGTGTGTGCACATGATGTACGATGGG
715 ACCGGCGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* * *
16563094 TTCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACTCACATCCCCT
780 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCT
16563159 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
844 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
16563209 TCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
1 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * **
16563274 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATC-TCTCAAAATTGGGGCCAAAACTCCT
66 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAAC-CAAGTTTGGGGCCAAAACTCCT
* *
16563338 TCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATG
130 TCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* * * *
16563403 AGTCTTCTTGCCATG-AACTTCACGTGAAAGCTTAAAGGACCATTGTATGAATTTACAAGCTATA
195 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
16563467 AAAATTGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
260 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* ** * * * *
16563532 CGGCTTTCGCATCCTATCTCTTTGGCCGGCGTAGTGCCCACCCGCCCGCTCGCCTGCCTGTTTCA
325 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG----CCCGCCCGCCCG-CT--C-GTTTCG
* * * * * * **
16563597 TCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCCGACCAGACCGAGGGTTACGGT
382 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGAC
* *** * *
16563662 AGCAGGATCGGTAGCACGCAGAGGGGGACCCGGTTGATCCCCGACTTGCGCATCCCGCCCCTCTG
447 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTG
* * * *
16563727 GCCGGTTGAGCACCCACACGCTCGTTTCATCGATTGACTTAGGCATACGGAGTTCATTCCCAGTC
512 GCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* *
16563792 TAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCAAGGGTT-CTGGTAGCACATGC
577 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGC-GGCAGCACATGC
* ** *
16563856 TGGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCG-TCGGGGCACCATCATCGGAGCATCGCC
641 TGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCT-GGGGCACCATCGCCGGAGCATCACC
* * ** * *
16563920 AGAGAACCTGACTGGCGGCATTACGGTTCCGGTGACCGGGGGGGCCGGAGGGGTGTGCGCACATG
705 GGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATC-GGGGGGCCGG-GGGGTGTGCGCACATG
**
16563985 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCATCTATCCCTCATCAAACCTCGAGAA
768 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
16564050 CTCACACACCCTTAAAGAGCACTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTG
833 CTCACAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
**
16564112 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACTGTTCGAGTTTTTAGCTGAA
1 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * *
16564177 TTTATTTGTGCATGCCAACAAAAATACAAGGATCACGT-ATAACAAGTTTGGGGCTAAAACTCCT
66 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCA-ACCAAGTTTGGGGCCAAAACTCCT
* *
16564241 TCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTG-AAAATAGAAAACG
130 TCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* *
16564305 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCAAA
195 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
16564370 AAAATGGCATTGGGACATAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCA
260 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
*
16564435 CGGCTTGCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCG
325 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCG----CCCGCCCGCTCGTTTCG
* ** *
16564500 TCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTG-TAG
382 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGA-
* ** * *
16564564 CAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGGCCCTCT
446 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCT
* *
16564629 AGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCTC-GA
511 GGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-
* * * ** * *
16564693 TCTAAGCATACAGAGTTCATTCCCCA-TCTAAGATCAGACCAGACTGAGGGTTGTGACAGCACAT
575 TCTAAGCATACGGAGTTCATT-CCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACAT
* *
16564757 ACTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCG-TCAGGGCACCATCGCCGGAGCATCA
639 GCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCT-GGGGCACCATCGCCGGAGCATCA
* * *
16564821 CCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGACGGGGGGTGTGTGCACATG
703 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATG
* * * * * *
16564886 ATGTACGATGGGTTCTGGTACTTGGTCCTTATATTGGGCCCTTATCCCTCATCAAACCTTGAGAA
768 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
16564951 CTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
833 CTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
16565013 TC-GTAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
1 TCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
** * *
16565077 ATTTTTTTGTGCATTACAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
65 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCCT
* *
16565142 TCCAAAAAAATTTTAGAAAATCCC
130 TCCGAAAAAATTTTAAAAAATCCC
16565166 AAACATAAGG
Statistics
Matches: 6351, Mismatches: 739, Indels: 346
0.85 0.10 0.05
Matches are distributed among these distances:
861 1 0.00
862 6 0.00
863 137 0.02
864 12 0.00
865 568 0.09
866 6 0.00
867 2 0.00
868 177 0.03
869 66 0.01
870 35 0.01
871 51 0.01
872 335 0.05
873 3 0.00
874 104 0.02
875 5 0.00
878 2 0.00
879 5 0.00
881 3 0.00
882 2 0.00
883 2 0.00
884 16 0.00
885 2 0.00
886 3 0.00
887 2 0.00
888 388 0.06
889 204 0.03
890 257 0.04
891 207 0.03
892 7 0.00
893 785 0.12
894 248 0.04
895 606 0.10
896 192 0.03
897 10 0.00
898 7 0.00
899 237 0.04
900 202 0.03
901 644 0.10
902 51 0.01
903 747 0.12
904 4 0.00
906 2 0.00
907 8 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (893 bp):
TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCCTT
CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
AAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATC
GGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
GCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGG
CATGTGTTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGA
CCGGCGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
Found at i:16563799 original size:26 final size:26
Alignment explanation
Indices: 16563769--16563821 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16563759 ATTGACTTAG
16563769 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16563795 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16563821 G
1 G
16563822 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16564448 original size:903 final size:900
Alignment explanation
Indices: 16561112--16565169 Score: 5665
Period size: 903 Copynumber: 4.5 Consensus size: 900
16561102 TAGGCAAACA
* * * ** * *
16561112 GAGTTCATTCCCGGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCACATGCTGGGCTCGAGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * *
16561177 ATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACTATCGTCGGAGCATCGCCGAAGAACCTGAC
66 ATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGAC
** * ** *
16561242 CGATGGCATTGGGGTTTCGGCGATCGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATAGGT
131 CGGCGGCATTGGGGTTCCGATGATCGGGGGGCCGGAGGGGTGTGCGCACATGATGTGCGATGGGT
16561306 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACGCCCTT
196 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC-CCCTT
* *
16561371 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCCTTAAAGTGTCTAAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* ** * * * * *
16561436 TTTTTTCAAATGGCCGTAAAATCCTGTACACATCAAGTTTTTACCTGAATTTTTTTGTGTATGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
16561501 AACAAAAATACAGGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAATTTTAAA
390 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
** * * * *
16561566 AAATCCCAAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTTGTCTTGGCATTAA
455 AAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
16561631 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATT-GG-CA
520 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGACA
* *
16561694 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACAGCTTGCGCATCCC
585 T--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
** * *
16561759 GTCTCTCTGGTTGACGCAGTG---CCCGCCTGCCCGCT-CT--TTTCGTCGGTTGGCTTAGGCAT
648 GTCTCTCTGGCCGACGTAGTGCCCCCCGCCCGCCCGCTGCTCGTTTCGTCGGTTGGCTTAGGCAT
** *
16561818 ACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCAC
713 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
** * ** * * * * *
16561883 GCAGAGGGGGACCCGATCGAACAACGGCTTCCGCATCCCACCCTTCTGGCCGGTTGAGCACCTGC
778 GCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGC
*
16561948 ACGCTCGTTTCATGGGTTGACTTAGGCATACGCAGTTCATTCCCAGTCTAAGCATACG
843 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
** * * *
16562006 GAGTTCATTCCCAGTCTAAGATCGGATTGGACCAAGGGTTACGGTAGCACATGCTGGGCCCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
** * **
16562071 ATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGG-GTTATCATCGGAGAACCTGA
66 ATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAG-CATCGCCGGAGAACCTGA
* * * *
16562135 CCGGCGGCATTGGGGTTTCGATGTTCGGGGGGGCC-AAGGGGGTGTGCGCACATGATGTGTGATG
130 CCGGCGGCATTGGGGTTCCGATGATC-GGGGGGCCGGA-GGGGTGTGCGCACATGATGTGCGATG
16562199 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTC
193 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-C
* *
16562264 CTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGA
257 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
16562329 CACTTTTTTCAAATGGTCACTAAATCTTGTACACTTGGAGTTTTTAGCT-AAATTTTTTGTGCAT
322 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * *
16562393 GCCAACAAAAATACAAGGATCACGTCAACCAAGTTTTGGCCCAAAAATCCTTCCGAAATAATTTT
387 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * ** * *
16562458 AAAAAATCTCGAACCGCAAAATGTTTTGAAAATCATGAAAAATAGAAAACGTGTCGTCTTGCCAT
452 AAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
16562523 GAAACTTCACGTGGAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGT
517 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGG
*
16562588 ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
582 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * *
16562653 CGTCTCTCTGGCTGACGTAGTG---CCCTCTCG-CC-C-GCTCATTTCGTCGGTTCGCTTAGGCA
647 CGTCTCTCTGGCCGACGTAGTGCCCCCCGCCCGCCCGCTGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * *
16562712 TACGGAGTTCATTCCCAATCTAAGAT-TGTACCGGATCGAGGGTTGCGACAACAAGATCGGCAGC
712 TACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* *
16562776 ACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
776 ACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
*
16562841 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
841 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * ** * *
16562901 GAGTTCATTCCCAGTCTATGATTGGACTAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * **
16562966 ATGTGTTGGTGCCACATTTTTCTTTG-CTAGGGCACCATCGCCGGAGCATCGCTTGAGAACCTGA
66 ATGTGTTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGA
* * * * * *
16563030 TCAGCGGCATTGGGGTTCCGATGATTGGGGGGACGG-GGGGTGTGTGCACATGATGTACGATGGG
130 CCGGCGGCATTGGGGTTCCGATGATCGGGGGGCCGGAGGGGTGTGCGCACATGATGTGCGATGGG
* * *
16563094 TTCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACTCACATCCCCT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCT
*
16563159 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
16563224 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* **
16563289 CAACAAAAATACAAGGATCACATCT-CTCAAAATTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
389 CAACAAAAATACAAGGATCACGTCTAC-CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * *
16563353 AAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCTTCTTGCCATG
453 AAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * * * *
16563418 -AACTTCACGTGAAAGCTTAAAGGACCATTGTATGAATTTACAAGCTATAAAAATTGCATTGGCA
518 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGA
* * * *
16563482 CACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTTCGCATCCT
583 CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * *
16563547 ATCTCTTTGGCCGGCGTAGTGCCCACCCGCCCGCTCGCCTGC-CTGTTTCATCGATTGGCTTAGG
648 GTCTCTCTGGCCGACGTAGTGCCC-CCCGCCCGCCCG-CTGCTC-GTTTCGTCGGTTGGCTTAGG
* * * * *
16563611 CATACGGAGTTCATTCCTAGTCTAAGATCCGACCAGACCGAGGGTTACGGTAGCAGGATCGGTAG
710 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
** * *
16563676 CACGCAGAGGGGGACCCGGTTGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCACC
775 CACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACC
* * *
16563741 CACACGCTCGTTTCATCGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
840 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
16563802 GAGTTCATTCCTAGTCTAAGATCGGACCGGACCAAGGGTT-CTGGTAGCACATGCTGGGCTCGAG
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGC-GGCAGCACATGCTGGGCTCGGG
** *
16563866 CATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCAGAGAACCTGA
65 CATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGA
* ** * *
16563931 CTGGCGGCATTACGGTTCCGGTGACCGGGGGGGCCGGAGGGGTGTGCGCACATGATGTGCGATGG
130 CCGGCGGCATTGGGGTTCCGATGATC-GGGGGGCCGGAGGGGTGTGCGCACATGATGTGCGATGG
**
16563996 GTGCTGGTACTTGGCCCTTATATTGGCCATCTATCCCTCATCAAACCTCGAGAACTCACACACCC
194 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC-CCC
* *
16564061 TTAAAGAGCACTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
258 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
** *
16564126 ACTTTTTTCAAATGGTCACAAAATCTTGTACTGTTCGAGTTTTTAGCTGAATTTATTTGTGCATG
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
16564191 CCAACAAAAATACAAGGATCACGTATAACAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTA
388 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
*
16564256 AAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTG-AAAATAGAAAACGAGTCGTCTTGCCATG
453 AAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
16564320 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCAAAAAAATGGCATTGGGA
518 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGA
*
16564385 CATAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
583 CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
16564450 GTCTCTCTGGCCAACGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
648 GTCTCTCTGGCCGACGTAGTGCCC-CCCGCCCGCCCG-CTGCTCGTTTCGTCGGTTGGCTTAGGC
* ** * * **
16564515 ATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGTAGCAGCAGGATCGGCAGC
711 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * *
16564580 ACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGGCCCTCTAGCCGGCTGAGCACCC
776 ACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
* *
16564645 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCTC-GATCTAAGCATACA
841 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-TCTAAGCATACG
* * ** * * *
16564705 GAGTTCATTCCCCA-TCTAAGATCAGACCAGACTGAGGGTTGTGACAGCACATACTGGGCTCGGG
1 GAGTTCATT-CCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* *
16564769 CATGTGTTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCACCGGAGAACCTGA
65 CATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGA
* * * *
16564834 CCGACGGCATTGGGGTTCCGATGATCGGGGGGACGG-GGGGTGTGTGCACATGATGTACGATGGG
130 CCGGCGGCATTGGGGTTCCGATGATCGGGGGGCCGGAGGGGTGTGCGCACATGATGTGCGATGGG
* * * * *
16564898 TTCTGGTACTTGGTCCTTATATTGGGCCCTTATCCCTCATCAAACCTTGAGAACTCACATCCCCT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCT
16564963 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-GTAAATGGGGAC
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGAC
* *
16565027 ACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATT
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
16565092 ACAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
388 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
*
16565157 GAAAATCCCAAAC
453 AAAAATCCCAAAC
16565170 ATAAGGGGAC
Statistics
Matches: 2799, Mismatches: 325, Indels: 73
0.88 0.10 0.02
Matches are distributed among these distances:
893 333 0.12
894 270 0.10
895 591 0.21
896 190 0.07
897 8 0.00
898 1 0.00
900 4 0.00
901 586 0.21
902 49 0.02
903 763 0.27
904 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
ATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGAC
CGGCGGCATTGGGGTTCCGATGATCGGGGGGCCGGAGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
AATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGACAT
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGACGTAGTGCCCCCCGCCCGCCCGCTGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
GAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACG
CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
Found at i:16564702 original size:26 final size:26
Alignment explanation
Indices: 16564672--16564724 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16564662 GTTGACTTAG
* * *
16564672 GCATACGGAGTTCATTCTCGATCTAA
1 GCATACAGAGTTCATTCCCCATCTAA
16564698 GCATACAGAGTTCATTCCCCATCTAA
1 GCATACAGAGTTCATTCCCCATCTAA
16564724 G
1 G
16564725 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCCATCTAA
Found at i:16565294 original size:26 final size:26
Alignment explanation
Indices: 16565258--16565309 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
16565248 GTTGACTTAG
16565258 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16565284 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16565310 AATCAGACCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16565691 original size:578 final size:579
Alignment explanation
Indices: 16564588--16565715 Score: 1669
Period size: 578 Copynumber: 1.9 Consensus size: 579
16564578 GCACGTAGAG
* * * * * *
16564588 GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGGCCCTCTAGCCGGCTGAGCACCCGCACGCTC
1 GGGGACCCGATCGATACCCGGCTTGCACATCCCGCCCCTCTAGCCGGCTAAGCACCCGCACACTC
*
16564653 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCTCGATCTAAGCATACAGAGTTCATTCCCC
66 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCTAAGCATACAGAGTTCATTCCCC
* * *
16564718 ATCTAAGATCAGACCAGACTGAGGGTTGTGACAGCACATACTGGGCTCGGGCATGTGTTGGTGCC
131 ATCTAAAATCAGACCAGA--GA--G--GTGACAGCACATACTGGGCTCGGGCATGTGCTAGTGCC
*
16564783 GCATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGG
190 ACATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGG
* * ** * * *
16564848 GTTCCGATGATCGGGGGGACGGGGGGTGTGTGCACATGATGTACGATGGGTTCTGGTACTTGGTC
255 GTTCCGACGATCGGGGGGACAGGGGGTGTACGCACATGATGTACGATGGGTGCCGGTACTTGGCC
* * *
16564913 CTTATATTGGGCCCTTATCCCTCATCAAACCTTGAGAACTCACATCCCCTTAAAGAGCATTTGAG
320 CTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACATCCCCTTAAAGAGCATTTGAG
*
16564978 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCGTAAATGGGGACACTTTTTTCAAATGAT
385 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAGTCGTAAATGGGGACACTTTTTTCAAATGAT
*
16565043 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATTACAAAAAAAATACAAG
450 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGACAAAAAAAATACAAG
*
16565108 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAGAAAATCCCAAACATA
515 GATCACCTCTACCAAGTTT-GGGCCAAAACTCCTTCCAAAAAAATTTTAGAAAATCCCAAACATA
16565173 A
579 A
* * *
16565174 GGGGACCCGATCGATACTCGGCTTGCACATCCCGCCCCTCTGGCCGGCTAAGCCCCCGCACACTC
1 GGGGACCCGATCGATACCCGGCTTGCACATCCCGCCCCTCTAGCCGGCTAAGCACCCGCACACTC
* *
16565239 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGCATACGGAGTTCATT-CC
66 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCGA-TCTAAGCATACAGAGTTCATTCCC
*
16565302 CAGTCTAAAATCAGACC-G-GA-GTGACAGCACATACTGGGCTCGGGCATGTGCTAGTGTCACAT
130 CA-TCTAAAATCAGACCAGAGAGGTGACAGCACATACTGGGCTCGGGCATGTGCTAGTGCCACAT
* * ** **
16565364 TTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTC
194 TTTTCTTCGTCAGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTC
* * * *
16565429 CGACGATCGGGGGGGCCAGGGGGTGTACGCAGATGATGTGCGATGGGTGCCGGTATTTGGCCCTT
259 CGACGATC-GGGGGGACAGGGGGTGTACGCACATGATGTACGATGGGTGCCGGTACTTGGCCCTT
*
16565494 ATATTGGCCCCCTATCCCTCATCAAA-CTTCAAGAACTCACA-CCCCTTTAAATAGCATTTGAGA
323 ATATTGGCCCCCTATCCCTCATCAAACCTT-AAGAACTCACATCCCC-TTAAAGAGCATTTGAGA
*
16565557 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAGTC-TGAAATGGGGACACTTTTTTCAAATGGT
386 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAGTCGT-AAATGGGGACACTTTTTTCAAATGAT
* * *
16565621 CACGAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
450 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGACAAAAAAAATACAAG
*
16565686 GATCACCTCTACCATGTTTGGGCCAAAACT
515 GATCACCTCTACCAAGTTTGGGCCAAAACT
16565716 GTTTCCGCAA
Statistics
Matches: 490, Mismatches: 46, Indels: 21
0.88 0.08 0.04
Matches are distributed among these distances:
577 123 0.25
578 234 0.48
582 2 0.00
585 6 0.01
586 125 0.26
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.27
Consensus pattern (579 bp):
GGGGACCCGATCGATACCCGGCTTGCACATCCCGCCCCTCTAGCCGGCTAAGCACCCGCACACTC
GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCTAAGCATACAGAGTTCATTCCCC
ATCTAAAATCAGACCAGAGAGGTGACAGCACATACTGGGCTCGGGCATGTGCTAGTGCCACATTT
TTCTTCGTCAGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCG
ACGATCGGGGGGACAGGGGGTGTACGCACATGATGTACGATGGGTGCCGGTACTTGGCCCTTATA
TTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTA
CAGGTTTGCTGCCAGTAGCCATTAAAGAGTCGTAAATGGGGACACTTTTTTCAAATGATCACAAA
ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGACAAAAAAAATACAAGGATCAC
CTCTACCAAGTTTGGGCCAAAACTCCTTCCAAAAAAATTTTAGAAAATCCCAAACATAA
Found at i:16567086 original size:26 final size:26
Alignment explanation
Indices: 16567050--16567102 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16567040 GTTGACTTAG
* *
16567050 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
*
16567076 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
16567102 G
1 G
16567103 ATCGGAATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:16567475 original size:903 final size:895
Alignment explanation
Indices: 16565195--16568562 Score: 4329
Period size: 903 Copynumber: 3.8 Consensus size: 895
16565185 CGATACTCGG
* * * *
16565195 CTTGCACATCCCGCCCCTCTGGCCGGCTAAGCCCCCGCACACTCGTTTCGTGGGTTGACTTAGGC
1 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* *
16565260 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATC-A-GACCGGAG
66 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGATGA-TGGAG
* * * * **
16565323 -T--GACAGCACATACTGGGCTCGGGCATGTGCTAGTGTCACATTTTTCTTCGTCGGGGCACCAT
130 TTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCAT
* * **
16565385 TGCCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGG
195 CGCCAGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGG
* * * *
16565450 GGTGTACGCAGATGATGTGCGATGGGTGCCGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCA
260 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
16565515 TCAAA-CTTCAAGAACTCACACCCCTTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
325 TCAAACCTT-AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
16565579 GCCATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACGAAATCTTGTACACTTCGAG
389 GCCATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
*
16565644 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCTACC-ATGTTT-GG
454 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCTA-GTTTGGG
* * * * * * * * *
16565707 GCCAAAACTGTTTCCGCAAAAAGTTTCAAAAAATCTCAGATCGCAAAAAGTTTCAAAAATCATGA
518 GCCAAAACTCTTTCC-AAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGA
* *
16565772 AAAATAGAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGTCTTAAGGGACCATTGTATGA
582 AAAATAG-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * * *
16565837 ATTTACAAGCCATAAAAATGGCATTGGCACAT--AGAAATATGAAGATGTGTCTAAACACACTTG
646 ATTTACAAGCAATAAAAATGGCATTGG-A-ATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* ** *
16565900 CCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGTTGACGTAGTGCCCGCCCGCCCAC
709 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC
* * *
16565965 T---CGT-TTT-GTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAAA
774 TGCCCGTCTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAAGA
* * * * **
16566025 CCGAGGGTTGTGACAGCAGGATCGACAGCACGCAGAGGGGGACCC-GATCGATCTTCGA
838 CCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCT-GATCCCCGA
* * * *
16566083 CTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACTCTCGTTTCGTGGGTTTACTTAGGC
1 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * *
16566148 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCGAAGATTGGACTGGATCA
66 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCGA-T-GAT--
* * * **
16566213 AGG-GTTACAGTAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGC
126 -GGAGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGC
* * ** * * * * *
16566277 ACCATCGTCGGAGCATCACCAGAGAACTTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGT
190 ACCATCGCCAGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
* *
16566342 CAGGGGGGTGTGTGCACATGAAGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
255 CA-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * * *
16566407 CCCTCATCAAACCTCAAGAAGTCTCACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGG
319 CCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
16566472 CAGTAGCCATTAAAGAGTATGAAATGGGGACACTTTTTTCAAATGGTCACGAAATCTTGTACACT
384 CAGTAGCCATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
16566537 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCCCGTCTACCTAGTT
449 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCTAGTT
* * * * *
16566602 TGGGCCCAAAACTCCTTT-CAAAAAAATTATCAAAAATCCCAAACCATAAAAAGTTTCAAAAATT
514 TGGGGCCAAAACT-CTTTCCAAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATC
**
16566666 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGATGATTGTA
578 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
16566731 TGAATTTACAAGCAATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCT
643 TGAATTTACAAGCAATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * ** * * * *
16566796 ACCGCCATATCGATCCACATCTTGCGCATCCCTTCTCTCTGGCCGGCATAGTGCTCGCCCGCCCG
708 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
** *
16566861 CCTGCCCGCTCATTTCGTCGGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCAGACT
773 -CTGCCCG-TC-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACA
* * * *
16566926 AGATCGAGGGTTGCGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGGCTGATCCCCAA
835 AGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCCGA
* *
16566987 CTTGCGCATCCTGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
1 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * *
16567052 ATACAGAGTTCATTCTCAGTCTAAGCATACGGAGTTCACTCCCAGTCTAAGATCGGAATGGACTG
66 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-G-AT-GA-TG
* * * *
16567117 AGAGTTATGGCAGCACATGCTGGGCCCGGGCATGTGCTGGTGCAACATTTTACTTCACCGGGGCA
127 -GAGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCA
* * ** * *
16567182 CCATCGCCAGAGCATCGTCGGAGAACTTGACCGACGACATTACGGTTTCGACGATCAGGGGGGCC
191 CCATCGCCAGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC
* **
16567247 AGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGTGCTTATATTGGCCCCCTATCC
256 AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
16567312 CTCATCAAACCTTGAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
321 CTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
16567377 GTAGCCATTAAAGTGTCTAAAATGGGTACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
386 GTAGCCATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* **
16567442 GAGTTTTTACCAAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCTAGTTTG
451 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCTAGTTTG
* *
16567507 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCTTG
516 GGGCCAAAACTCTTTCCAAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTG
* *
16567572 AAAAATAGAAAACGAGTCTTCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
581 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * * *
16567637 ATTTACAAGTAATAAAATTGGCATTGGCATGCAAAAATTTGAAGATGTGCCTAAACCCACCTACC
646 ATTTACAAGCAATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
16567702 ACCCTATCGATCGACGGCTTGCGCTTCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGTTC
711 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCT-
* * * * * **
16567767 GCCCGTTCGTTTCCTCAGTTCGCTTATGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGA
775 GCCCG-TC-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAAGA
* * * * ** * *
16567832 CCAAGGGTTACGGCAGTAGGATCGGCAGCACGCATAGGGGGACATGGCCGATCCCCGG
838 CCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCCGA
* * * * *
16567890 CTTGCGCATCCCGCCCCTTTGGCCGACTGAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGC
1 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
16567955 ATACGGAGTTCATTCCCAGTCTAAG-AT--GG-G---A-T--C-G-----GA--G-TGA-GG-GT
66 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGATGATGGAGT
* * * * ** *
16567999 TGCGGAAGCACATGCTGGGCTCGGGCATTTGCTGGTGCCACAATTTTCTTCGTCGGGGCATCATC
131 TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATC
* * * * *
16568064 GTCAGAGCATCGTCGAAGAACCTGATCGATGGCATTGGGGTTCC-AGCGATC-GGGGGGCCTGAG
196 GCCAGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCAG-G
16568127 GGG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
259 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
16568191 ATCAATCCTTGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
324 ATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * * * * *
16568256 GCCATTAAAGTGTTTGAAATGGGGACATTTTTTTCAAATGGTCAAAAAACCTTGTACACTTCAAG
389 GCCATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * *
16568321 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGG
454 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCTAGTTTGGGG
* * ** **
16568386 CCAAAACTCTTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCGTGAAA
519 CCAAAACTCTTTCCAAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAA
* * **
16568451 AATAGAAAACGAGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAA-GGATCAAAGTATGAATT
584 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * * *
16568515 TACAAGCCATAAAAATGGCATTGGTACGTAGAACTATGAAGATGTGCC
649 TACAAGCAATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCC
16568563 CGCCCGCCCG
Statistics
Matches: 2170, Mismatches: 274, Indels: 85
0.86 0.11 0.03
Matches are distributed among these distances:
875 53 0.02
876 348 0.16
877 100 0.05
878 1 0.00
879 1 0.00
881 2 0.00
882 1 0.00
884 1 0.00
887 2 0.00
888 107 0.05
889 1 0.00
890 1 0.00
892 1 0.00
893 3 0.00
894 1 0.00
895 6 0.00
896 2 0.00
897 261 0.12
898 284 0.13
899 15 0.01
900 5 0.00
901 2 0.00
902 8 0.00
903 649 0.30
904 268 0.12
905 47 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGATGATGGAGT
TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATC
GCCAGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGG
GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
CAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
CATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCTAGTTTGGGGCC
AAAACTCTTTCCAAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAA
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCAATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTGCCCGT
CTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAAGACCGAGGGT
TGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCCGA
Found at i:16570574 original size:26 final size:26
Alignment explanation
Indices: 16570544--16570596 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16570534 GTTGACTTAG
*
16570544 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16570570 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16570596 G
1 G
16570597 ATCGAACCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16571115 original size:900 final size:899
Alignment explanation
Indices: 16569665--16571326 Score: 2505
Period size: 900 Copynumber: 1.8 Consensus size: 899
16569655 GTTGACTTAG
*
16569665 GCATACGGAGTTCATTCCCAGTCTAAGATCGACCAAACCGAGGGTTGCGGTAGCAGATGCTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGACCAAACCGAGGGTTGCGGTAGCACATGCTGGGC
** * *
16569730 TCAGGCATGTGTTGGTGCCGTATTTTTTTTCACCGAGGCACCATCGTCGGAGCATCATCGGAGAA
66 TCAGGCATGTGTTGGTGCCACATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCACCGGAGAA
* * * *
16569795 CCTCACTGGCGGCACAGGGGTTCCGACCATCGAGGGGGCCGGTGGGGGGTTGTACGCACATGATG
131 CCTCACCGGCGGCACAGGGGTTCAGACCATCGAGGGGGCC-G-AGGGGGTTGTACACACATGATG
* * * *
16569860 TGCGGTGGGTGCTGGTGCTTGGCCCATATATTGGCCCCCTATCCCTCAGCAAACCTCGAGAACTC
194 TGCGATGGGCGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCAGCAAACCTCAAGAACTC
*
16569925 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAATAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAA
16569990 ATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTT
324 ATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTT
* * * * *
16570055 TGTGCATGCCAACAAAAGTACAACGATCACGTCTACCAATTTTGGGTTTAAAACTCCTTTCGAAA
389 TGTGCATGCCAACAAAAATACAACGATCACGTCTACAAAGTTTGGGGTAAAAACTCCTTTCGAAA
* ** *
16570120 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGACTCGTC
454 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGACTCGTC
*
16570185 TTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACGAGCCATAAAAATGG
519 TTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
16570250 TATTGGCACACAAAAATATGAAGATGTACCTAAACCCACCTACCTCCCTATCGATCCACGGCTTG
584 CATTGGCACACAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * **
16570315 CGCATCCCTTCTCTCTAGTCGACGTAGTGCCCGTCTGCCCGTCCGCCCACTCGTTTCATCGGTTG
649 CGCATCCCGTCTCTCTAGCCGACGTAGTG-CC--C-GCCCGCCCACCCACTCATTTCATCAATTG
* * *
16570380 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC-AGACCAGACCGAGGGTTGTGGCAGCAGG
710 GCTTAGGCATACAGAGTGCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTGTGGCAGCAGG
16570444 ATCAGCAGCAGCAGAGCAGGACCCGACCGATCCTCGACTTGTGCATCTCGCCCCTCTGGCTGGTT
774 ATCAGCAGCAGCAGAGCAGGACCCGACCGATCCTCGACTTGTGCATCTCGCCCCTCTGGCTGGTT
16570509 GAGCACCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAA
839 GAGCACCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAA
* ** *
16570570 GCATACGGATTTCATTCCCAGTCTAAGATCGAACCCGATCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCG-ACCAAACCGAGGGTTGCGGTAGCACATGCTGGG
** * * * *
16570635 CTTGGGCATGTGTTGGTGTCACATTTTTCTTCA-TGGGGCACCATCGTCGGCGCATCACCGGAGA
65 CTCAGGCATGTGTTGGTGCCACATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCACCGGAGA
* ** * * *
16570699 ACCTGACCGGCGGCATTGGGGTTCTAG-CGATCGGGGGGGCC-AGGGGG-TGTGCACACATGATG
130 ACCTCACCGGCGGCACAGGGGTTC-AGACCATCGAGGGGGCCGAGGGGGTTGTACACACATGATG
* * *
16570761 TGCGATGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTT
194 TGCGATGGGCGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCAGCAAACCTCAAGAACTC
*
16570826 ACACCCCC-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAA
* *
16570890 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGC-TCGAGTTTTTAGCTGAATTTTT
324 ATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACA-CTTCGAGTTTTTAGCTGAATGTTT
16570954 TTGTGCATGCCAACAAAAATACAA-GTATCACGTCTA-AAAGGTTTGGGGTAAAAACTCCTTTCG
388 TTGTGCATGCCAACAAAAATACAACG-ATCACGTCTACAAA-GTTTGGGGTAAAAACTCCTTTCG
** * *
16571017 AAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTC
451 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGACTC
*
16571082 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
516 GTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * *
16571147 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
581 TGGCATTGGCACACAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * **
16571212 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCATTTTGTCAATTGG
646 TTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCACCCACTCATTTCATCAATTGG
16571277 CTTAGGCATACAGAGTGCATTCCCAGTCTAAGATCGAACCAGACCGAGGG
711 CTTAGGCATACAGAGTGCATTCCCAGTCTAAGATCGAACCAGACCGAGGG
16571327 CACCATCGCC
Statistics
Matches: 679, Mismatches: 72, Indels: 21
0.88 0.09 0.03
Matches are distributed among these distances:
896 67 0.10
897 2 0.00
899 5 0.01
900 374 0.55
901 80 0.12
902 5 0.01
905 89 0.13
906 57 0.08
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGACCAAACCGAGGGTTGCGGTAGCACATGCTGGGC
TCAGGCATGTGTTGGTGCCACATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCACCGGAGAA
CCTCACCGGCGGCACAGGGGTTCAGACCATCGAGGGGGCCGAGGGGGTTGTACACACATGATGTG
CGATGGGCGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCAGCAAACCTCAAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
GGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTG
TGCATGCCAACAAAAATACAACGATCACGTCTACAAAGTTTGGGGTAAAAACTCCTTTCGAAAAA
ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGACTCGTCTT
GCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACACAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCACCCACTCATTTCATCAATTGGCTTAG
GCATACAGAGTGCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTGGCAGCAGGATCAGCA
GCAGCAGAGCAGGACCCGACCGATCCTCGACTTGTGCATCTCGCCCCTCTGGCTGGTTGAGCACC
CGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAA
Found at i:16573368 original size:870 final size:869
Alignment explanation
Indices: 16571356--16577482 Score: 7149
Period size: 895 Copynumber: 7.0 Consensus size: 869
16571346 TCAGAAAACC
*
16571356 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG
1 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
16571421 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGT
66 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
16571486 CTGAAAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCCGAA
131 CTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
*
16571551 TTTTTTTGTGCATGCCAACAAAAGTACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTT
195 TTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTT
** * * *
16571616 CTGAAAAAATTTTAAAAAATCCCGAACGGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAAGGA
259 CCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* * *
16571681 GTCGTCTTGCCAAGAAACTTCATGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAA
324 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * *
16571746 AAGTGGCATTGGCACATAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCAC
389 AAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * **
16571811 AGCTTGCGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTTTTCGGT
454 GGCTTGCGCATCCCGTCTCTCTGGTCAGCGTAGTGCCCGCCCG--C-CC-GCTCGTTTCGTCGGT
* * * * * * * *
16571876 TGGCTTAGGCATACGTAGTTTATTCCCAGTCTAAGTTCAGTCCGGATCGAGGGTTGCAGCAGTAG
515 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGAAG
* * * * * **
16571941 GATCGGTAGCACGTAGAGGGGGACCCGACCGATCCTAGGCTTGCACATCCTACCCCTCTGGCCGG
580 GATC-GCAGCACGCAGAGGGGGACCCG-CTGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
16572006 CTGAGCACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
643 CTAAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * *
16572071 TCGGATCG-GATCGAGGGTTACGACAGCACCTGCTGGGTTCGGGCATGTGTTGGTGTCACATTTT
708 TCAGACCGAGATCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTT
* *
16572135 TCTT--T------ACC-T-G--GGCACCATCGTCGGAGAACCTGACCGACGGCTTTGGGGTTCCG
773 TCTTCGTCCAGGCACCATCGCCGG-AGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCG
*
16572188 GCGATCGGGGGGGC-CGGGGGGGTGTGCGCACA
837 GCGATCGGGGGGGCTGGGGGGGGTGTGCGCACA
* *
16572220 TGATGTGTGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG
1 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
16572284 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCAATAAAGTGT
66 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
16572349 CTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAT
131 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
*
16572414 TGTTTTGTGCATGCCAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCC
196 TTTTTTGTGCATGCCAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * ** *
16572479 AAAAACACTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAGTCGTGAAAAATAGAAAACGAGT
261 AAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* *
16572544 CGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTCTGAATTTACAAGCCATAAAA
326 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
16572609 ATTGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
391 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
16572674 CTTGCGCATCACGTCTCTCTGGTCAGCGCAGTGCCCGCCCGCCCGCTCGTTTCGTTGGTTGGCTT
456 CTTGCGCATCCCGTCTCTCTGGTCAGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
16572739 AAGCATTCGGAGGTCATTCCCCA-CCTAAGATCGGACCGGACCGAGGGTTACGACAGAAGGATCA
521 AGGCATACGGAGTTCATT-CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGAAGGATC-
* * * *
16572803 GCAGCACGCAGAGGGGGACCTAGCTAATCCTTGGCTTGTGCATCCCGCCCCTCTGGCCGGCTAAG
584 GCAGCACGCAGAGGGGGACC-CGCTGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAG
**
16572868 CACCCGCACGCTCGTTTCGTAAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
648 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
*
16572933 CCGA-ATCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCGCATTTTTCTTC
713 CCGAGATCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTC
* * * *
16572997 GTCCAGGCACCATCGCCGGAGCATCATCGGAGAACTTGACCGGCGGCATTGGGGTTCCGACGATC
778 GTCCAGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC
16573062 GGGGGGGCTGGGGTGGGGGTGTGCGCACA
843 GGGGGGGCT-GGG-GGGGGTGTGCGCACA
* * *
16573091 TGATGTGTGATGGATGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACGTCGAG
1 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
16573155 AACTCACA-CCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
66 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
16573219 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
131 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * * *
16573284 TTTTTTGTGCATGCCAAAATAATACAAGGATCATATCTACCAAGTTTGGGCCCAAAACCCCTTTC
196 TTTTTTGTGCATGCCAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCC
*** * *
16573349 AAAAAAATTTTAAAAAATCTTAAACCGTAAAAAGTTTCAAAAATCGAGAAAAATAGAAAAGGAGT
261 AAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
16573414 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAA
326 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
** ** * *
16573479 ATGGTGTTGGCATTCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCC-GTC--TCTC-CG
391 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC-CACG
* ** * ** * *
16573540 GC---CG------GTGT-AGTGCTCA---T-CCGCCCGTCCACCCGCTCGTTTCGTCGGTTGGCT
455 GCTTGCGCATCCCGTCTCTCTGGTCAGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * * *
16573591 TAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACTGGACTGAGGGTTGTGGCAGCATGATCG
520 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGAAGGATCG
* * * * *
16573656 ACAGCACACAGA-GGGGACCCGACCGATCCTCGGCTCGCGCATCCCACCCCTCTGGCCAGCTAAG
585 -CAGCACGCAGAGGGGGACCCG-CTGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAG
* * *
16573720 CACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATATGGAGTTCATTCCCAATCTAAGCATATG
648 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG---AT-
* ** * *
16573785 AAGTTCATTCCCAGTCTAAGATCGGATCGGACCGATGGTTGCGGTAGCACATGCTGGGGTCGAGC
709 CAG---A----C---C---GA---GATC-GA--G--GGTTGCGACAGCACATGCTGGGCTCGGGC
** ** *** **
16573850 ATGTGTTGGTGCTACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATTACCAAAGAACCTGAC
753 ATGTGTTGGTGCCGCATTTTTCTTCGTCCAGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
* *
16573915 CTG-TGGCATTGGGGTTCCGGCGATCGGGGGGGC-CGGGGGGGTGTGCGCACA
818 C-GACGGCATTGGGGTTCCGGCGATCGGGGGGGCTGGGGGGGGTGTGCGCACA
* * *
16573966 TGATGTGCGGTGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTTGAG
1 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
16574031 AACTCACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGT
66 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * * *
16574096 TTGAAATGGGAACACTTTTTCCTAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAA-
131 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* *
16574160 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCGAAACTCCTTC
196 TTTTTTGTGCATGCCAA-AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * * *
16574225 CAAAAATATTTTAAAAAATCCCAAATCGTAAAAAGTTTCAAAAATCGAGAAAAATTGAAAACGAG
260 CAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* *
16574290 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACCAGCCATAAA
325 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
16574355 AATGGCATTGGTACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCACG
390 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * ** * *
16574420 GCTTGTGCATCTCGTCTCTCTGG-CTGACGTAAAACCCGCCCGCCTGCCTGCCCACTCATTTCGT
455 GCTTGCGCATCCCGTCTCTCTGGTCAG-CGT---A-GTGCCCG-C--CC-GCCCGCTCGTTTCGT
* * ** *
16574484 CAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACTAGACCGAGGGTTGCGGTA
511 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCA
* * *
16574549 -ACAGGATCAACAGCATGCAGAGGGGGACCCGGCTCGATCCTCGGCTTGCGCATCCCGCCCCTAT
576 GA-AGGATC-GCAGCACGCAGAGGGGGACCC-GCT-GATCCTCGGCTTGCGCATCCCGCCCCTCT
* * * *
16574613 GGTCGGCTAAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATACCCAGT
637 GGCCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
16574678 CTAAGCATACGAAGTTCATTCCTAGTCTAAGATCGGACCAGACTGATGGTTGC-AGCAGCACATG
702 CTAAG-AT-C--AG---A--CC--G----AGAT-----C-GA--G--GGTTGCGA-CAGCACATG
* * * *
16574742 CTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCG--CAGGCGCACCATCGTCGGAGCATCG
741 CTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCCA-G-GCACCATCGCCGGAGCATCG
* * * * * * * * *
16574805 TCGAAAAACCTGATCGACGGCATTGGGGTTCCGGTGGTCGAGGGGGCCGGGGTGGGGTCTGTGCA
804 TCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCTGGGG-GGGGTGTGCGCA
16574870 CA
868 CA
16574872 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
1 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
16574937 AACTCACACCCTCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
66 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
16575002 CTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTCTTAGCTGAAT
131 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* *
16575067 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGACAAAACTCATTC
196 TTTTTTGTGCATGCC-AAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTC
* ** * *
16575132 CAAAAATATTTTAAAAAATCATGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAG
260 CAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* *
16575197 TCGTCTTGCCATGAAACTTCACGTGAAGGGTTAAAGGACCATTGTATGAATTTACAAGCCATAAA
325 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
16575262 AATGGCATTGGCACACAAAAATATGAAGATGTG-CTGAAACACACCTACCACCCTATCGATCCAC
390 AATGGCATTGGCACACAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCAC
* * * *
16575326 GGCTTGCGCATCCCGTTTCTCTGGTCGGCGTAATGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGC
454 GGCTTGCGCATCCCGTCTCTCTGGTCAGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * ** * * *
16575391 TTACGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACTGAGGGTTGCAGTAGCAA-GAT
519 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAG-AAGGAT
* * * * *
16575455 CGGCAGCACGTAGAGGGGGACCCAG-TCGATCCCCGGCTTGTGCATCTCGCCCCTCTAGCCGGCT
583 C-GCAGCACGCAGAGGGGGACCC-GCT-GATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
16575519 GAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGGCAT
645 AAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT
* *
16575584 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAACAGCACATGCTAGGCTCG
709 -C--AG---A---CC-G----AGAT----------CGAGGGTTGCGACAGCACATGCTGGGCTCG
* * *
16575649 GGCATGTGTTGGTGCCGCATTTTTCTTTG-CCGAGGCACCATCACCGGAGCATCGTCGGAGAACT
750 GGCATGTGTTGGTGCCGCATTTTTCTTCGTCC-AGGCACCATCGCCGGAGCATCGTCGGAGAACC
* * * * * * *
16575713 TGACCGGCGACATTGTGATTTCGACGTTC-GGGGGGCT--GGGGGGTGTGCGCACA
814 TGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCTGGGGGGGGTGTGCGCACA
* * *
16575766 TGATATGCGATGGGAGCTGGTACTTGGCCCATTTTATTGGCCCCCTATCCCTCATCAAACCTCGA
1 TGATGTGCGATGGGTGCTGGTACTTGGCCC-TTATATTGGCCCCCTATCCCTCATCAAACCTCGA
16575831 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
65 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
16575896 TCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
130 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * *
16575961 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAACTTCTT
195 TTTTTTTGTGCATGCC-AAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTT
* * * *
16576026 CCGAAAAACTTTTGAAAAATCCCGAACCGTAAAAAGTTT-AGAAAATTGTGAAAAATAGAAAACG
259 CCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA-AAAATCGTGAAAAATAGAAAACG
* *
16576090 ATTTGTCTTGCCATGAAACTTCACGT-AATGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
323 AGTCGTCTTGCCATGAAACTTCACGTGAA-GGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
16576154 AAAAATGGCATTGGCACATAGAAATATGAAGATGGGCCTAAAGCCACCTACCACCCTATCGATCC
387 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * * * **
16576219 ACGGCTTGCGCATCCCATTTCTCTGGCCGGTGTAGTGCCCGCCCACCCGTTCGTTTTATCGGTTG
452 ACGGCTTGCGCATCCCGTCTCTCTGGTCAGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * *
16576284 GCTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCAGACC-ACGGGTTACGGTAGCAA-
517 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA-GGGTTGCGGCAG-AAG
* * * * * * *
16576347 GATCGACAGCACGTAGAGGGGGACCCGATCGATCGC-AGGCTTACGCATCTCACCCCTCTGGTCG
580 GATCG-CAGCACGCAGAGGGGGACCCGCT-GATC-CTCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * ** * *
16576411 ACTGAGTGCCCGCACGCTTGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAG
642 GCTAAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * ** *
16576476 ATCAGACC-AGACCAAAGGTTACTACAGCACATGCTGGGCTCAGGCATGTACTGGTGTCGCATTT
707 ATCAGACCGAGATCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTT
** ** * * * *
16576540 TTCTTCGTCGGGGCACCATCATCGGATCATCGTCGGAGAACCTAACCGACGGCATAGGGGTTCTG
772 TTCTTCGTCCAGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* *
16576605 GTGATC-GAGGGGCTGTGGGGAGGGGGTGTGCGCACA
837 GCGATCGGGGGGGC--T-GGG-GGGGGTGTGCGCACA
* * * * **
16576641 TGATGCGCAATGGTTGCTGGTGCTTGGCCCTTATATTGGCTGCCTATCCCTCATCAAACCTCGAG
1 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
16576706 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCTATTAAAGTGT
66 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
16576771 CTGAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCTAGTTTTTAGCTGAAT
131 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* *
16576836 TTTTTTGTGCATGCCAACAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-
196 TTTTTTGTGCATGCCAA-AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTC
** * ** * * ** *
16576900 CTGAAAAATTTTAACAAATCCC-AAATGCAAAAAGTTTTAAAAATTATGAAAAATAGAAAATGAG
260 CAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
*
16576964 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAA
325 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* **
16577029 AATGGCATTAGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
390 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * *
16577094 ACTTGC-TATCCCGTCTCTCTGGCCAGCGTAGT----GCCCGTCCGCTCGTTTCATCAGTTGGCT
455 GCTTGCGCATCCCGTCTCTCTGGTCAGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * *
16577154 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGGCA-ACAGGATC
520 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGA-AGGATC
* * * * * * *
16577218 GACAGCACACAGAGGGGGACCTGTCCGATCCTCAGTTTGCACATCCCGCCCCTCTGGCCAGCTGA
584 G-CAGCACGCAGAGGGGGACCCG-CTGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT-A
* * * *
16577283 A-CGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCGTACAGAGTTCATTCCCAGTCTAAGATCA
646 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * ** ** * * * *
16577347 GACC-AGACCAAAGGATGCGGTAGCACATGCTGGGCTCGGGCATGTACTGCTACCGTATTTTTTT
711 GACCGAGATCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCT
* ** * * * * * *
16577411 TCATCGGGGCACCAT-GTCGGATCATCGTCAGAGAACCTAATCGACGGCATTAGGGTTCCGGCGA
776 TCGTCCAGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGA
16577475 TCGGGGGG
841 TCGGGGGG
16577483 TCGGAGCATT
Statistics
Matches: 4569, Mismatches: 552, Indels: 281
0.85 0.10 0.05
Matches are distributed among these distances:
851 1 0.00
852 101 0.02
853 86 0.02
855 2 0.00
856 2 0.00
857 234 0.05
858 10 0.00
859 3 0.00
861 258 0.06
862 74 0.02
863 119 0.03
864 12 0.00
865 4 0.00
866 48 0.01
867 257 0.06
868 51 0.01
869 107 0.02
870 345 0.08
871 79 0.02
872 184 0.04
873 25 0.01
874 218 0.05
875 89 0.02
876 51 0.01
877 318 0.07
878 111 0.02
879 5 0.00
880 6 0.00
883 1 0.00
885 2 0.00
888 1 0.00
889 4 0.00
890 2 0.00
891 2 0.00
893 2 0.00
894 48 0.01
895 606 0.13
896 3 0.00
897 6 0.00
898 212 0.05
899 102 0.02
900 5 0.00
901 3 0.00
902 90 0.02
903 21 0.00
904 202 0.04
905 3 0.00
906 194 0.04
907 256 0.06
908 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (869 bp):
TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
TTTTTTGTGCATGCCAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCC
AAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTGCGCATCCCGTCTCTCTGGTCAGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGAAGGATCGC
AGCACGCAGAGGGGGACCCGCTGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCAC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
AGATCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTC
CAGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGG
GGGGCTGGGGGGGGTGTGCGCACA
Done.