Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 108 of 190
Found at i:16873136 original size:26 final size:26
Alignment explanation
Indices: 16873084--16873136 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16873074 CCAGTCCAAT
*
16873084 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
16873110 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
16873136 C
1 C
16873137 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:16873327 original size:879 final size:877
Alignment explanation
Indices: 16871308--16873461 Score: 2813
Period size: 879 Copynumber: 2.4 Consensus size: 877
16871298 CTTTGATCTG
* *
16871308 GTCCGATCTTATATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
16871373 TCAACCCACGAAACGAGCGTACGGGTGCCCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGA
66 TCAACCCA-GAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGAGGA
* *
16871438 TCGG-TCGGTTCCCCCACTGTGTGCTGCTGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCT
130 TCGGCT-GGGT-CCCC-CTCTGTGCTGCT-ATCCT-CT--C-CAA----CG-TCCGGTCTGATCT
* * *
16871502 TAGACTGGGAATGAACTCCGTATGCCTAATCCAACTGACAAAAT-GAGCGGACGGGCGG--GCGG
182 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAGAAAATAG-GCGGACGGG-GGCAGCGG
* * * * * *
16871564 GCGAGCACTACGCCGGCTA-AAGAGACGGGATGCGCAAGCCATGAATCGATAGGGTGGTAGGTTG
245 GCGGGCACTACGTCGGCCAGAA-AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * * *
16871628 GTTTAGGCACATCTTCATATTTTTGCAGGCCAATACCATTTTTATGGTTTGTAAATTCATACAAT
309 GTTTAGGCACATCTTCATATTTATGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
16871693 GGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTT
374 GGTCCCTTAAGCCTCCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
** * ** * * *
16871758 TTAAACTTTTTACGGTTCGAGATTTTTTAAACTTTTTTCGGAAGGTGTTTTGGCCCGAAACTTGG
439 AGAAACTTTTTACGGTTCGAGATTTTTTAAAATTAATTCGAAAGGTGTTTTAGCCCCAAACTTGG
* * * ** *
16871823 TAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAACCTTGAAGTGTAG
504 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
* *
16871888 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGGTATTGGCAGCAA
569 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
16871953 ACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGCGAGTTCTCGAGGTTCGATGAGGGATAGGGG
634 ACCTGTAAAATATCAAATGCACCTTAAGGGGGTGCGAGTTCTCGAGGTTCGATGAGGGATAGGGG
*
16872018 GCCAATATAAGGGCCAAGTACCAGCACCAATCCCACATCATGTGCGCACACCCCCCGGCCCCCCC
699 GCCAATATAAGGGCCAAGTACCAGCACCAATCCCACATCATGTGCGCACACCCCCCGACCCCCCC
* * *
16872083 GATCGTCAGAACCCCAATATCGTCGATCAGGTTCTCCGACGATGGTGCCCCGGTGAAGAAAAATA
764 GATCGTCAGAACCCCAATACCGTAGATCAGGTTCTCCGACGA--GTGCCCCGGCGAAGAAAAATA
* *** * * *
16872148 CGGCATCGGCACATGCCCGAGCCCAGCATCTGCTGCCGCAACCCTTGATCG
827 CGGCACCAAAAAATGCCCGAGCCCAGCATCTGCTGCCGCAACCCTCGATCA
* * *
16872199 GTCCGATCTTAGACTGGGACTGAACTCCGTATGCTTAGATTGGGAATGAACTCTGTATGCCTAAG
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * **
16872264 TCAACCCAGAAAATGAGCGTGCGGGCGCTCAACCGGCCAGAGGGTTGGGATGCGCAAGCCGAGGA
66 TCAACCCAG-AAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGAGGA
* *
16872329 TCGGCCGGGTCCCCCTCTACGTGCTGCCTATCCTACTGCCGCAACCCTCGGTCTGGTCTGATCTT
130 TCGGCTGGGTCCCCCTCT--GTGCTG-CTATCCT-CT--C-CAA----C-GTCCGGTCTGATCTT
*
16872394 AGACTGGGAATGAACTCCGTATGCCTAAGGCAA-C-AGACAAA-A--C-GA-----GCA---GGC
183 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAGA-AAATAGGCGGACGGGGGCAGCGGGC
16872445 GGGCACTACGTCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
247 GGGCACTACGTCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*
16872510 TAGGTACATCTTCATATTTATGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
312 TAGGCACATCTTCATATTTATGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
16872575 CCCTTAAGCCTCCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTAGA
377 CCCTTAAGCCTCCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTAGA
* *
16872640 AACTTTTTGCGGTTCTAGATTTTTTAAAATTAATTCGAAAGGTGTTTTAGCCCCAAACTTGGTAG
442 AACTTTTTACGGTTCGAGATTTTTTAAAATTAATTCGAAAGGTGTTTTAGCCCCAAACTTGGTAG
*
16872705 ACGTGATTCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
507 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
*
16872770 ATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
572 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * *
16872835 TGTAAAATATCAAATGCACTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
637 TGTAAAATATCAAATGCACCTTAAGGGGGTGCGAGTTCTCGAGGTTCGATGAGGGATAGGGGGCC
* *
16872900 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCGA
702 AATATAAGGGCCAAGTACCAGCACCAATCCCACATCATGTGCGCACA-CCCCCCGACCCCCCCGA
* * *
16872965 TCGTC-GAAACCCCAATGCCGCTAG-TCAGGTTCTCCGACGA-TGCTCCGGCGAAGAAAAATATG
766 TCGTCAG-AACCCCAATACCG-TAGATCAGGTTCTCCGACGAGTGCCCCGGCGAAGAAAAATACG
* *
16873027 GCACCAAAAAATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCA
829 GCACCAAAAAATGCCCGAGCCCAGCATCTGCTGCCGCAACCCTCGAT-CA
* * * *
16873077 GTCCAATCTTAGACTGGGAATGAACTCTGCATGCTTAGGCTGGGAATGAACTCCGTATGCCTAAG
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* *
16873142 TCAACCCATGAAACGAGCGTGCGGGTGCTTAGTCGACCAGAGGGGCGGGATGCGCAAGCCGAGGA
66 TCAACCCA-GAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGAGGA
*
16873207 TCGGCTGGGTCCCCCTCTG-GC-GC-AACCT-T-C-A-GTCCGGTCTGATCTTAGACTGGGAATG
130 TCGGCTGGGTCCCCCTCTGTGCTGCTATCCTCTCCAACGTCCGGTCTGATCTTAGACTGGGAATG
*
16873265 AACTCCCTATGCCTAAGCCAACCGATGAAACGAGTAGGCGGACGGGTGGGCAAGCGGGCGGGCAA
195 AACTCCGTATGCCTAAGCCAACCGA-GAAA--A-TAGGCGGAC-GG-GGGC-AGCGGGCGGGC-A
* * *
16873330 C-ACGTCGACCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG-GGGTTTAGGC
252 CTACGTCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* ** *
16873393 ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCTTACAATGGTCCCTT
317 ACATCTTCATATTTATGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
16873458 AAGC
382 AAGC
16873462 ACCCATCGCA
Statistics
Matches: 1114, Mismatches: 111, Indels: 89
0.85 0.08 0.07
Matches are distributed among these distances:
859 45 0.04
860 1 0.00
861 3 0.00
862 2 0.00
863 1 0.00
865 2 0.00
866 1 0.00
867 1 0.00
868 2 0.00
870 1 0.00
872 4 0.00
873 1 0.00
874 1 0.00
875 4 0.00
876 2 0.00
877 58 0.05
878 205 0.18
879 517 0.46
880 53 0.05
881 2 0.00
886 2 0.00
887 1 0.00
889 5 0.00
890 8 0.01
891 189 0.17
892 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (877 bp):
GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
TCAACCCAGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGAGGAT
CGGCTGGGTCCCCCTCTGTGCTGCTATCCTCTCCAACGTCCGGTCTGATCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGCCAACCGAGAAAATAGGCGGACGGGGGCAGCGGGCGGGCACTACGTCGG
CCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
TATTTATGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTCCA
AGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTAGAAACTTTTTACGGTT
CGAGATTTTTTAAAATTAATTCGAAAGGTGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTA
TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATT
TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATATCAAA
TGCACCTTAAGGGGGTGCGAGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAA
GTACCAGCACCAATCCCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCAGAACCCCAA
TACCGTAGATCAGGTTCTCCGACGAGTGCCCCGGCGAAGAAAAATACGGCACCAAAAAATGCCCG
AGCCCAGCATCTGCTGCCGCAACCCTCGATCA
Found at i:16873673 original size:26 final size:26
Alignment explanation
Indices: 16873637--16873689 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16873627 CCGGTCTGAT
*
16873637 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16873663 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16873689 C
1 C
16873690 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16874527 original size:26 final size:26
Alignment explanation
Indices: 16874498--16874576 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
16874488 TCGATCCGAT
16874498 CTTAGACTGAAAATGAACTCCGTATG
1 CTTAGACTGAAAATGAACTCCGTATG
*
16874524 CTTAGACT-AGGAATGAACTCCGTATG
1 CTTAGACTGA-AAATGAACTCCGTATG
*
16874550 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGAAAATGAACTCCGTATG
16874576 C
1 C
16874577 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
25 1 0.02
26 47 0.98
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAAAATGAACTCCGTATG
Found at i:16874905 original size:26 final size:26
Alignment explanation
Indices: 16874876--16874928 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16874866 TCGATCCGAT
16874876 CTTAGACTGAAAATGAACTCCGTATG
1 CTTAGACTGAAAATGAACTCCGTATG
*
16874902 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGAAAATGAACTCCGTATG
16874928 C
1 C
16874929 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAAAATGAACTCCGTATG
Found at i:16875172 original size:352 final size:352
Alignment explanation
Indices: 16874535--16875193 Score: 1246
Period size: 352 Copynumber: 1.9 Consensus size: 352
16874525 TTAGACTAGG
16874535 AATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
1 AATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
*
16874600 GTGCGGGTGCTCAGTCGGCTAGAGGGGCGGGATGTACAAGCCAGGGATCAGCCGGGTCCCTCTCT
66 GTGCGGGTGCTCAGTCGGCTAGAGGGGCGGGATGTACAAGCCAGGGATCAGCCGGGTCCCCCTCT
* *
16874665 GCGTGCTGCTGATCCTGCTATTGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
131 GCGTGCTGCTGATCCTGCTATTGTAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCC
16874730 GTATGCCTAAGCCAACCGACGAAACGAACGGGCGAGCGGACGGGCGGGTTCTACGCCGGCCAGAG
196 GTATGCCTAAGCCAACCGACGAAACGAACGGGCGAGCGGACGGGCGGGTTCTACGCCGGCCAGAG
*
16874795 AGACGAGATGCGCAAGCTGTGGATCGATAGGGTGGTAAGTGGGTTTAGCATGTGCTGCCACAACC
261 AGACGAGATGCGCAAGCTATGGATCGATAGGGTGGTAAGTGGGTTTAGCATGTGCTGCCACAACC
16874860 CTCGGTTCGATCCGATCTTAGACTGAA
326 CTCGGTTCGATCCGATCTTAGACTGAA
*
16874887 AATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
1 AATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
16874952 GTGCGGGTGCTCAGTCGGCTAGAGGGGCGGGATGTACAAGCCAGGGATCAGCCGGGTCCCCCTCT
66 GTGCGGGTGCTCAGTCGGCTAGAGGGGCGGGATGTACAAGCCAGGGATCAGCCGGGTCCCCCTCT
* *
16875017 GCGTGCTGCTGATTCTGCTGTTGTAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCC
131 GCGTGCTGCTGATCCTGCTATTGTAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCC
16875082 GTATGCCTAAGCCAACCGACGAAACGAACGGGCGAGCGGACGGGCGGGTTCTACGCCGGCCAGAG
196 GTATGCCTAAGCCAACCGACGAAACGAACGGGCGAGCGGACGGGCGGGTTCTACGCCGGCCAGAG
*
16875147 AGACGAGATGCGCAAGCTATGGATCGATAGGGTGGTAGGTGGGTTTA
261 AGACGAGATGCGCAAGCTATGGATCGATAGGGTGGTAAGTGGGTTTA
16875194 CGCACATCTT
Statistics
Matches: 299, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
352 299 1.00
ACGTcount: A:0.23, C:0.25, G:0.31, T:0.20
Consensus pattern (352 bp):
AATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
GTGCGGGTGCTCAGTCGGCTAGAGGGGCGGGATGTACAAGCCAGGGATCAGCCGGGTCCCCCTCT
GCGTGCTGCTGATCCTGCTATTGTAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCC
GTATGCCTAAGCCAACCGACGAAACGAACGGGCGAGCGGACGGGCGGGTTCTACGCCGGCCAGAG
AGACGAGATGCGCAAGCTATGGATCGATAGGGTGGTAAGTGGGTTTAGCATGTGCTGCCACAACC
CTCGGTTCGATCCGATCTTAGACTGAA
Found at i:16875807 original size:26 final size:26
Alignment explanation
Indices: 16875778--16875829 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16875768 CCAGTCCGAT
16875778 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16875804 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16875830 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16876131 original size:158 final size:157
Alignment explanation
Indices: 16875804--16876169 Score: 398
Period size: 156 Copynumber: 2.3 Consensus size: 157
16875794 ACTCCGTATG
* * * * *
16875804 CTTAGATTGGGAATGAAC-TCTGTATGACTAAGTCAACCCATGAAACGAGTGTGCGAGTGCTCAG
1 CTTAGACTGGGAATGAACTTCAG-ATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGTGCTCAG
* * * * *
16875868 TCGGCTAGAGGGGCGAGATGCGCAAGCCTAGCATCAGTCGGGCCCCCCTACGTGCTACCGATCCT
65 TCAGCCAGAGCGGCGAGATGCGCAAGACGAGCATCAGTCGGGCCCCCCTACGTGCTACCGATCCT
* * * *
16875933 GTTGCCGCAACCGTCGGTCCGGTCCGAT
130 GCTACCGCAACCCTCGGTCCGGTCCCAT
* *
16875961 CTTAGACTGGGAATGATCTTC-GATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGTGCTTAG-
1 CTTAGACTGGGAATGAACTTCAGATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGTGCTCAGT
* * * * * * *
16876024 CTAGCCAGAGCGGCG-GTATGCGCAATACGGGGATCAGTCTGGTCCTCCTCTGCGTGCTGCCGAT
66 C-AGCCAGAGCGGCGAG-ATGCGCAAGACGAGCATCAGTC-GGGCC-CCCCTACGTGCTACCGAT
* *
16876088 CCTGCTACTGCAACCCTCGGTCTGGTCCCAT
127 CCTGCTACCGCAACCCTCGGTCCGGTCCCAT
* * * *
16876119 CTTAGACTGGGAATGAACTACATATGCCTAAGCCAACCGACGAAACGAGCG
1 CTTAGACTGGGAATGAACTTCAGATGCCTAAGTCAACCCACGAAACGAGCG
16876170 GGCGGGCGGG
Statistics
Matches: 174, Mismatches: 29, Indels: 10
0.82 0.14 0.05
Matches are distributed among these distances:
155 2 0.01
156 64 0.37
157 21 0.12
158 61 0.35
159 26 0.15
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTTCAGATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGTGCTCAGT
CAGCCAGAGCGGCGAGATGCGCAAGACGAGCATCAGTCGGGCCCCCCTACGTGCTACCGATCCTG
CTACCGCAACCCTCGGTCCGGTCCCAT
Found at i:16877737 original size:26 final size:26
Alignment explanation
Indices: 16877708--16877759 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16877698 TTGGTCTGAT
*
16877708 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16877734 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16877760 TCGAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16878268 original size:26 final size:26
Alignment explanation
Indices: 16878239--16878291 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16878229 CCAGTCCGAT
16878239 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
* *
16878265 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
16878291 C
1 C
16878292 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:16878418 original size:112 final size:112
Alignment explanation
Indices: 16878265--16878485 Score: 318
Period size: 112 Copynumber: 2.0 Consensus size: 112
16878255 ACTCCGTATG
* * *
16878265 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGTGCTCAGC
*
16878330 CGGCCAGAG-GAGCGGGATGCACAAGCCGGGCATCGGTCGGGTCCGAT
66 CGGCCAAAGCG-GCGGGATGCACAAGCCGGGCATCGGTCGGGTCCGAT
* * *
16878377 CTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAACCCATGAAATGAGTGTGCGAGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGTGCTCAGC
* * * * *
16878442 TGGCCAAAGCGGTGGGATGCGCAAGTCGGGGATCGGTCGGGTCC
66 CGGCCAAAGCGGCGGGATGCACAAGCCGGGCATCGGTCGGGTCC
16878486 CCCTCTGAGT
Statistics
Matches: 96, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
112 95 0.99
113 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.34, T:0.19
Consensus pattern (112 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGTGCTCAGC
CGGCCAAAGCGGCGGGATGCACAAGCCGGGCATCGGTCGGGTCCGAT
Found at i:16879295 original size:26 final size:26
Alignment explanation
Indices: 16879259--16879309 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16879249 AGTCCGATCC
*
16879259 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
16879285 TAGATTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
16879310 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:16881392 original size:26 final size:26
Alignment explanation
Indices: 16881363--16881414 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16881353 TCCGATCCGA
*
16881363 TCTTAGACTAGGAATGAACTCCGTAT
1 TCTTAGACTAGGAATGAACTCAGTAT
*
16881389 TCTTAGACTGGGAATGAACTCAGTAT
1 TCTTAGACTAGGAATGAACTCAGTAT
16881415 GGCTAAGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (26 bp):
TCTTAGACTAGGAATGAACTCAGTAT
Found at i:16882296 original size:26 final size:26
Alignment explanation
Indices: 16882267--16882319 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16882257 TCGGTCCGAT
*
16882267 CTTAGATTGGGAATGAAC-TCCGTATG
1 CTTAGACTGGGAATGAACAT-CGTATG
16882293 CTTAGACTGGGAATGAACATCGTATG
1 CTTAGACTGGGAATGAACATCGTATG
16882319 C
1 C
16882320 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACATCGTATG
Found at i:16882636 original size:903 final size:899
Alignment explanation
Indices: 16879740--16885357 Score: 7204
Period size: 903 Copynumber: 6.3 Consensus size: 899
16879730 GCCCAGCATG
* * **
16879740 TGCTGCCGCAACCATCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * * *
16879805 CCGACGAAATGA----AAGGGCGGGCAGGTGGGTACTACGTCGGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
16879866 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
16879931 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
16879996 GACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTACGGTTCGAGATCTTTTAAAATTTTTT
261 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* ** *
16880061 CAGAAGGAGTTTTGGCAACAAACTTGGTAGACGTGATCCTTGTA-TTTTGTTGGCATGCATAAAA
326 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * ** *
16880125 AAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGCGTTCATTTGAAAAAAGTGTCCCCATTTT
391 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
16880190 AGACACTTTAATGGCTACTGGTAGCGAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
456 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
16880255 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGTACAT
521 TTCTCGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
*
16880320 CATGTGCGCACATCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
586 CATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * *
16880385 GGCGATACTCTACCGATGGTGCCTCGACGAAGAAAAATGCGGCACCAACACAGGCCCGAGCCCAG
651 GGCGATGCTC--CGGATGGT-CCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAG
* * * * *
16880450 CATGTGCTGCCGGAACCCTCGATCCAGTCTGATCTAAAACTAGGAATGAACT-CGTATGCTTAGA
713 CATGTGCTGCCGCAACCCTCG-TCCGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGA
* * *
16880514 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATG-AACGAGCGTGCGGGTGGTTAGCCGGCCA
776 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCA
* * * * * * *
16880578 GAGGGGCGGGATGTGCAAGCCGGGCATCGGT-GTGGTCCCCTTCTACGTGCTGCCAATCT
841 GAGGGGCGGGATGCGTAAGCCGGGGATCGGTCG-GGTCCCCCTCTGCGTGCTGCCGATCC
* * *** *
16880637 TGCTGCTGCAACCCTCGATCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
16880702 CCGACGAAACGAGCGGGCGGGCGGGCAGGCGGGCACTACACCGGCAAGTGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
16880767 GCCGTGAATCGATAGGGTGGTAGTTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
16880832 TTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGAC
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
16880897 GACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGATTCGGGATTGTTTAAAAATTTTT
261 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * * *
16880962 CGAAAGGAGTTTTGGCCCTAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACATAA
326 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
16881027 AAATTCAGTTAAAAACTCAAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCTCATTTC
391 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * * *
16881092 AAACATTTTAATAGCTACTGGCAGGAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAG
456 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * * **
16881157 TTCTGGAGGTTTGATGAGGGATAGGTGACCAATATAAGGGCCAAGTACCATAACCCATCGCACAT
521 TTCTCGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** * *
16881222 CATGTGCGCACA-CCCCCC-G----ATC-A-C-T-GGAACCCCAATACCGTCGATCAGGTTCTCC
586 CATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
** * * * * *
16881277 AACGA---T--GG-T--TTCCCGATGAAGAAAAATACGGCACCAACACATTCCCGAGCCTAGCAT
651 GGCGATGCTCCGGATGGTCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCAT
* * * *
16881334 GTGCTACCGCAACCTTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATTCTTAGACTG
716 GTGCTGCCGCAACCCTC-GTCCGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTG
* * * * * * * *
16881399 GGAATGAACTCAGTATGGCTAAGTCAACCCACGAAATGTGTGTACGGGTACTCAGCCGGCCAGAC
779 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAG
* * * * * * *
16881464 CGGTGGGATGCGTAAGTCGGGGATCGGTCGAGTCCCCCTCGGCATGCTGCCAATCC
844 GGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** * * *
16881520 TGTTGCCGCAACCCTCGATCTGGTCTGATCCTAGACTGGGAATGAATTCGGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** *
16881585 CCGACGAAACGAGCGGGCGGCCGGGCGGGCGGGCACTACGTAGGCCAGAGAGACGGGATGCACAA
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
16881650 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAGTGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
16881715 TTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
16881780 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTTAAATTTTTT
261 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
** * *
16881845 CGGAAGGTTTTTTGGCCCCAAACTCGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
326 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
16881910 AAATTCAGCTAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
391 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
16881975 ATACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAG
456 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
16882040 TTCTCGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGAACCCATCGCACAT
521 TTCTCGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
*
16882105 CATGTGCGCACACCCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
586 CATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
16882170 GGCGATGCTCCGGTAATGGTACCCCGACGAAG-AAAATGCGGCACCAACACATGCCCGAGCCCAG
651 GGCGATGCTCCGG--ATGGT-CCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAG
* *
16882234 CATGTGCTGCCGCAACCCTCAGTTCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGA
713 CATGTGCTGCCGCAACCCTC-GTCCGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGA
* *
16882299 CTGGGAATGAACAT-CGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGTGCTCAGCCGGCT
776 CTGGGAATGAAC-TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCC
* * * * * * **
16882363 AGAAGGGCGGAATGCATAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGCGTTATCGATCC
840 AGAGGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
16882423 TACTGCCACAACCCTCGGTCTGGTCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *** *
16882488 CCGACAAAACGAGCGGGCGGGCGGGCGGGTAAGCACTACGCCGGCTAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * * ** * *
16882553 GTCGTGTATCGATAGGCTGGCAGGTGAGTTTAGGCACATCTTCATATTTCTGTGTGCCATTACCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
16882618 TTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACATGAAGTTTCATGGCAAGAC
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
16882683 GACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTT
261 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *
16882748 CGGAAGGATTTTTGGCCCCAAGCTTGGTAGACATGATCCTTGTATTTTTGCTGGCATGCACAAAA
326 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
16882813 AAATTCAGCTAAATACTCGAGGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTC
391 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
16882877 AGACACTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAG
456 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* **
16882942 TTCTCGAGATTTGATGAGGGATAGGGGGCCAATATCAGGAACAAGTACCAGCACCCATCGCACAT
521 TTCTCGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
16883007 CATGTGCGCACACCCCCTCGGCCCCCCCGATCGCCGGAACCCTAATGTCGCCGGTCAGGTTCTCC
586 CATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * * * * *
16883072 GGCGATGCTCTGGCGATGGTGCCCAACGAAGAAAAATGTGGCACCAGCACATGACCGAGCCCAAC
651 GGCGATGCTC-CG-GATGGTCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGC
* * *
16883137 ATGTGCTACCACAA-CC-C-T-C-G---G----T---CT-G---G---TCCG-AT-CTTATACTG
714 ATGTGCTGCCGCAACCCTCGTCCGGTCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTG
* * * *
16883178 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCAGCCGGCCAGAG
779 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAG
* * * * *
16883243 GGGCGGGATGCGTAAGCCAGGGATCGGTCGGGTCCCACTCTACGTGCTGTCGATCT
844 GGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
16883299 TGCTACCACAACCCTCGGTCTGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCCAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
16883364 CTGACGAAATGAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCACAA
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
16883429 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
16883494 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGAT
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
16883559 GGCTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
261 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *
16883624 CGGAAGGATTTTTGGCCCCCAACTTGGTTGGCGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
326 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
16883689 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG-CCAATTTGAAAAAAGTGTCCCCATTT
391 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC-ATTTGAAAAAAGTGTCCCCATTT
* * * *
16883753 CAAACTCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTGT
455 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * *
16883818 GTTCTCAAGATTTGATGACGGATAGGGGGCCAATATAAGGGTCAAGAACCACCACCCATCGCACA
520 GTTCTCGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
16883883 TTATGTGCGC-CAACCCCCCCGGCCCCCCCGATCGCCAGAACCCTAATGTCGTCGGTCAGGTTCT
585 TCATGTGCGCAC-ACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
** *
16883947 -C--CGA-----C-GAT-G-CCCCGGTGAAGAAAAATGCGGCACCAACACATGCTCGAGCCCAGC
649 CCGGCGATGCTCCGGATGGTCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGC
* *
16884001 ATGTGTTGCCGCAA----C--CC--T-CGA--TT---C----A-G---TTCG-AT-CTTAGACTG
714 ATGTGCTGCCGCAACCCTCGTCCGGTCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTG
* * * * * * * * *
16884042 CGAATGAACTCCGTATGCCTATGTCAACTCACGAAATGAGGGCGCAGGTGCTCAACCGGCTAGAG
779 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAG
* * *
16884107 GGGCGGG-TGCGTAAG-CTGGGAGTCGGCCGAGT--CCC-C--C-T-CTG-CG----
844 GGGCGGGATGCGTAAGCCGGGGA-TCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* **
16884150 TGCTGCCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * *
16884215 TCGATGAAACGAGCGGGCGGGCGGGCAGGTGGGCACTGCACCAGCCAGAGAGACGGGATGCACAA
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
16884280 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
16884345 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
16884410 AATTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
261 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *
16884475 CAGAAGGTGTTTTGGCCCCCAACTTGGTCGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
326 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
16884540 AAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTGTGACCATATGAAAAAAGTGTCCCCATTTC
391 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
16884604 AGACACTTTAATGGCTACTGGCAACAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
456 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
16884669 TTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCACAT
521 TTCTCGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
16884734 TATATGCGCACACCCCCCCGGCCCCCCTGATCG-CTGGAACCCCAATACTGCCGGTCAGGTTCTC
586 CATGTGCGCACACCCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * * * *
16884798 CGGTGATGCTCCGACAATGGTGCCTC-AGTGAAGAAAAATGCAGCACCAACACATGCCCAAGCCC
650 CGGCGATGCTCCG--GATGGT-CCCCGA-CGAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
* *
16884862 AGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGTTAATGAACTCCGTATGCTTA
711 AGCATGTGCTGCCGCAACCCTC-GTCCGGTCCGATCTTAGACTG-GAATGAACTCCGTATGCTTA
* * * *
16884927 GACTGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGCTGGC
774 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGC
* * * *
16884992 CAGAGGGGTGGGATGCGTAAGCCGGGGATCGGTCAGGTCCACCTCTGCATGCTGCCGATCC
839 CAGAGGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** * *
16885053 TGCTAG-TGCAACCCTCAGTCTAATCCAATCTTAGACTGGGAATGAACTTCGTATGCGTAAGCCA
1 TGCT-GCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
16885117 ACCGACGAAACAAGTGGGCGGGCGGGCGGGCGAGCAGGCACTATGCCAGCCAGAGAGACGAGATG
65 ACCGACGAAACGAGCGGGCGGGCGGGCGGGC--G--GGCACTACGCCGGCCAGAGAGACGGGATG
* *
16885182 TGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCCATGCCAA
126 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
*
16885247 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
191 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* **
16885312 AAGACGACTCGTTTTCTATTTTTTACGATTTTCAAAACTTTTTACG
256 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
16885358 TGCAGGCGCT
Statistics
Matches: 4121, Mismatches: 492, Indels: 206
0.86 0.10 0.04
Matches are distributed among these distances:
849 1 0.00
850 196 0.05
851 393 0.10
853 2 0.00
855 2 0.00
856 3 0.00
857 1 0.00
858 2 0.00
860 1 0.00
861 4 0.00
862 8 0.00
863 17 0.00
864 174 0.04
865 3 0.00
866 3 0.00
868 1 0.00
871 2 0.00
873 1 0.00
874 6 0.00
875 3 0.00
876 504 0.12
877 194 0.05
878 4 0.00
879 1 0.00
881 80 0.02
882 46 0.01
883 606 0.15
884 10 0.00
885 3 0.00
886 1 0.00
888 3 0.00
889 6 0.00
890 69 0.02
891 16 0.00
892 37 0.01
893 35 0.01
894 2 0.00
895 1 0.00
896 4 0.00
897 68 0.02
898 6 0.00
899 2 0.00
900 2 0.00
901 280 0.07
902 456 0.11
903 661 0.16
904 12 0.00
905 1 0.00
907 188 0.05
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
TGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
GGCGATGCTCCGGATGGTCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCAT
GTGCTGCCGCAACCCTCGTCCGGTCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
GCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
Found at i:16884926 original size:26 final size:26
Alignment explanation
Indices: 16884897--16884949 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16884887 CCGATCCGAT
**
16884897 CTTAGACTGTTAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
16884923 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
16884949 C
1 C
16884950 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:16888020 original size:870 final size:866
Alignment explanation
Indices: 16885372--16888064 Score: 3892
Period size: 870 Copynumber: 3.1 Consensus size: 866
16885362 GGCGCTCAGT
* * * *
16885372 CGACCAGAGGGGCAGAATGCACAAGCCGAGCATCGAC-CGGGTCCCCCTCTGTGTGCTGCTGAGC
1 CGACCAGAGGGGCAGAATGCGCAAGCCGAGGATCGACTCGGGTCCCCCTCTGCGTGCTGCTGATC
* * ** *
16885436 TTGTTGTCGCAACCCTC-AGTCTGGTCCAATCTTAGATTGGGAATGAACTCCGTACGCCTAAGCC
66 CTGTTGCCGCAACCCTCGA-TCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
16885500 AATCGACGAAACGAGCGAACGG-GAGAGCAGGCGAACGGGCACTACGCCAGCCAGAGAGACGTGA
130 AACCGACGAAACAAGC--A-GGTG-G-GCGGGCGAA-GGGCACTACGCCAGCCAGAGAGACGGGA
* * * *
16885564 TGCGCAAGCTGTGGATCGATAGGATAGTAGCTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
189 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
*
16885629 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGCGAAGTTTCATG
254 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* *
16885694 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAA
319 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAA
*
16885759 ATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCACG
384 ATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAAG
* * *
16885824 CACAAAAAAATTCAGCTAAAAATTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCC
449 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * *
16885889 CCATTTCAAACACTTTCATGGCTACTGGCAGCAAACCTATAGAATCTCAAATGCTCTTTAAGGGG
514 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * *
16885954 GTGTGGGTTCTCGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTAT
579 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
*
16886019 CGCACATCATGTGCGCACA--CCCCCCGGTCCCCCCGATCGCTGGAACCCCAATACCGCCGGTCA
644 CGCACATCATGTGCGCACACCCCCCCCGG-CCCCCCGATCGC-GGAACCCCAATGCCGCCGGTCA
* * *
16886082 GGTTCTCCGACGATTGTGCCCCGATGAAGAAAAATAAGGCACCAACACATGCCCGAGCCCAGCAT
707 GGTTCTCCGGCGATAGTGCCCCGATGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCAT
* * * *
16886147 GTGCTTCCGTAACCTTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTTAGTCA
772 GTGCTACCGTAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
16886212 ACCCACGAAACGAGCGTGCGGGTGCTCAAC
837 ACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * * * * * * * * * *
16886242 CGGCTAGAGGGGCGGGATGTGTAAGCCGGGGATCG-GTCGGGTCCCCTTCTACGTGCTGCCGATC
1 CGACCAGAGGGGCAGAATGCGCAAGCCGAGGATCGACTCGGGTCCCCCTCTGCGTGCTGCTGATC
* * *
16886306 CTGTTGCCGCAACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
66 CTGTTGCCGCAACCCTCGATCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
16886371 ACTGACGAAACAAG-TGGTCGGGCGGGC--A-GGCACTGCGTCGGCCAGAGAGACGGGATGCGTA
131 ACCGACGAAACAAGCAGGT-GGGCGGGCGAAGGGCACTACGCCAGCCAGAGAGACGGGATGCGCA
* * * *
16886432 AGCCGTGTATCGACAGGGTGGTAGGT-GGTTTAGGCACGTCTTCATATTTCTGTGTGCCAATGCC
195 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
*
16886496 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGA
260 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
16886561 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAG-GGTTCAAGATTTTATAAAATTTT
325 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-GCGGTTCAGGATTTTTTAAAATTTT
* * *
16886625 TTCAAAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAA
389 TTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAAGCACAA
* * *
16886690 AAAAATTCACCTAAAAACTC-AGAGTGTACAAGATTTTGTGACTATTTGAAGAAAGTGTCCCCAT
454 AAAAATTCAGCTAAAAACTCGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
16886754 TTCAGACACTTTAAT-GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
518 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
16886818 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGACAAGTACCAGCACCCATCGCA
583 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
16886883 CATCATGTGTGCACGCCCCCTCTGGCCCCCTTGATCGCCGGAACCCCAATGCCGCCGGTCAGGTT
648 CATCATGTGCGCACACCCCCCCCGGCCCCC-CGATCG-CGGAACCCCAATGCCGCCGGTCAGG-T
* * * *
16886948 CTCCGACATTGCTCTGGCGATGGTGCCCCAATCAAGAAAAATGCGGCACCAACACATGCCCGAGC
710 -T----C--T-C-C-GGCGATAGTGCCCCGATGAAGAAAAATACGGCACCAACACATGCCCGAGC
* *
16887013 CCAGCATGTGCTACCGTAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCC
765 CCAGCATGTGCTACCGTAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* *
16887078 TAAGTCAACCTACGGAACGAGCGTGCGGGTGCTCAAC
830 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* *
16887115 CGACCAAAGGGGCAGAATGCGCAAGCCGAGGATCGACT-GGGTCCCCCTCTGCGTGCTACTGATC
1 CGACCAGAGGGGCAGAATGCGCAAGCCGAGGATCGACTCGGGTCCCCCTCTGCGTGCTGCTGATC
* * * *
16887179 CTGCTGCCACAACCCTCGATCTGGTCTGATCTTAGATTGGCAATGAACTCCGTATTCCTAAGCCA
66 CTGTTGCCGCAACCCTCGATCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
*
16887244 ACCGACGAAACAAGCAGGTGGGCGGGCGAATGGGCACTACACCAGCCAGAGAGACGGGATGCGCA
131 ACCGACGAAACAAGCAGGTGGGCGGGCGAA-GGGCACTACGCCAGCCAGAGAGACGGGATGCGCA
* * *
16887309 AGCCGCGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCATCATATTTCTACGTGCCAATGCC
195 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
16887374 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
260 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
16887439 CGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTTAAAATTTT
325 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGA-TTTTTTAAAATTTT
**
16887504 TTCGGAAGGAGTTTTGGCCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAAGCACA
389 TTCAAAAGGAGTTTTGGCCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAAGCACA
* *
16887569 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGGGTCCCCAT
453 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
16887634 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCCAAA-GCTCTTTAAGAGGGTG
518 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT-CAAATGCTCTTTAAGGGGGTG
*
16887698 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGC
582 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
16887763 ACATCATGTGCGCACACCCCCCCCGGCCCCTCCGATCGTCGAAACCCCAATGCCGTCGGACAGGT
647 ACATCATGTGCGCACACCCCCCCCGGCCCC-CCGATCG-CGGAACCCCAATGCCGCCGGTCAGGT
* *
16887828 TCTCCGGCGATAGTGCCCCGGTGAAGAAAAATACGGCACCAACACATGCCCAAGCCCAGCATGTG
710 TCTCCGGCGATAGTGCCCCGATGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTG
* * * * *
16887893 CTCCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAATTCTGTATGCCTAAGTCAACC
775 CTACCGTAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
*
16887958 CACGAAACGAGCGTGCGGGTGCTCAGC
840 CACGAAACGAGCGTGCGGGTGCTCAAC
* * * * *
16887985 CGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGTGTCCCCCTCTGTGTGCTG-TCGAT
1 CGACCAGAGGGGCAGAATGCGCAAGCCGAGGATCGACTCGGGTCCCCCTCTGCGTGCTGCT-GAT
16888048 CCTGTTGCCGCAACCCT
65 CCTGTTGCCGCAACCCT
16888065 TGGTTTGGTC
Statistics
Matches: 1616, Mismatches: 170, Indels: 74
0.87 0.09 0.04
Matches are distributed among these distances:
860 122 0.08
861 294 0.18
862 82 0.05
863 2 0.00
864 2 0.00
866 7 0.00
867 1 0.00
868 2 0.00
869 2 0.00
870 318 0.20
871 3 0.00
872 2 0.00
873 267 0.17
874 4 0.00
875 2 0.00
877 52 0.03
878 143 0.09
879 32 0.02
880 115 0.07
881 159 0.10
882 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (866 bp):
CGACCAGAGGGGCAGAATGCGCAAGCCGAGGATCGACTCGGGTCCCCCTCTGCGTGCTGCTGATC
CTGTTGCCGCAACCCTCGATCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
ACCGACGAAACAAGCAGGTGGGCGGGCGAAGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTT
CAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAAGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCCCCGGCCCCCCGATCGCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
GCGATAGTGCCCCGATGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCG
TAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACGAGCGTGCGGGTGCTCAAC
Found at i:16888983 original size:322 final size:322
Alignment explanation
Indices: 16888396--16889037 Score: 989
Period size: 322 Copynumber: 2.0 Consensus size: 322
16888386 GAGGGATAGG
16888396 GGGCCAATATAAGGGCCAAGTACCAAAACCCATCGCACATCATGTGCGCACTACGCCAGCCAGAG
1 GGGCCAATATAAGGGCCAAGTACCAAAACCCATCGCACATCATGTGCGCACTACGCCAGCCAGAG
* * * * *
16888461 AGACGGGATGCGCAACCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTC
66 AGACGGGATGCGCAACCCGTGGATCAAAAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATCTC
* *
16888526 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAGGCTTCACGTGAA
131 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * * *
16888591 GTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACAATTTTCAAAATGTCTTGCGGTTTGGGAT
196 GTTTCATGGCAAGACGACTCGTTTTCTAATTTTCACAATTTTCAAAATGTCTTACGGTTCGGGAT
* * *
16888656 TTTTTAAAATTTTTTCGGAAGGAGTTTTGATCCCAAACTTGGTAGACGTGATCCTTGTATAA
261 TTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCCTGTATAA
16888718 GGGCCAATATAAGGGCCAAGTACCAAAACCCATCGCACATCATGTGCGCACTACGCCAGCCAGAG
1 GGGCCAATATAAGGGCCAAGTACCAAAACCCATCGCACATCATGTGCGCACTACGCCAGCCAGAG
* * * * * *
16888783 AGACGGGATGCGTAAGCTGTGGATCAAAAGGGTGGTTGGTGGGTTTTGGCACGTCCTCATATCTC
66 AGACGGGATGCGCAACCCGTGGATCAAAAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATCTC
* * *
16888848 TGCCTGCCATTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCCCGTGAA
131 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * * * * *
16888913 GTTTCATGGCAAGACGAGTTGTTTTCTAATTTTCACAATTTTTGAAACT-TTTTACGGTTCGGGG
196 GTTTCATGGCAAGACGACTCGTTTTCTAATTTTCACAA-TTTTCAAAATGTCTTACGGTTCGGGA
* *
16888977 TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCCTGTAT
260 TTTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCCTGTAT
16889038 TTTTGTTGGC
Statistics
Matches: 288, Mismatches: 31, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
322 280 0.97
323 8 0.03
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (322 bp):
GGGCCAATATAAGGGCCAAGTACCAAAACCCATCGCACATCATGTGCGCACTACGCCAGCCAGAG
AGACGGGATGCGCAACCCGTGGATCAAAAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATCTC
TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
GTTTCATGGCAAGACGACTCGTTTTCTAATTTTCACAATTTTCAAAATGTCTTACGGTTCGGGAT
TTTTTAAAATTTTTTCAGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCCTGTATAA
Found at i:16889452 original size:26 final size:26
Alignment explanation
Indices: 16889416--16889468 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16889406 CTGATCCAAT
*
16889416 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCATATG
*
16889442 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACACCATATG
16889468 C
1 C
16889469 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:16890348 original size:26 final size:26
Alignment explanation
Indices: 16890319--16890371 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16890309 TCGATCCGAT
*
16890319 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16890345 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16890371 C
1 C
16890372 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16890851 original size:898 final size:894
Alignment explanation
Indices: 16888765--16892007 Score: 4374
Period size: 898 Copynumber: 3.6 Consensus size: 894
16888755 CATCATGTGC
* * * * * * *
16888765 GCACTACGCCAGCCAGAGAGACGGGATGCGTAAGCTGTGGATCAAAAGGGTGGTTGGTGGGTTTT
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * *
16888830 GGCACGTCCTCATATCTCTGCCTGCCATTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
66 GGCACATCCTCATATTTCTACCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * * * *
16888895 CTTAAGCCTTCCCGTGAAGTTTCATGGCAAGACGAGTTGTTTTCTAATTTTCACAATTTTTGAAA
131 CTCAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * *
16888960 CTTTTTACGGTTCGGGGTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAT
196 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTT-AGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* ** *
16889025 GTGATCCCTGTATTTTTGTTGGCATGCTTAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGAT
260 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* ** *
16889090 TTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACTGTTTAATGGCTACTTGCAGCAAACCTG
325 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * *
16889155 TAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTAGAGGTTTGATGAGGGATAAGGGGCAAA
390 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * **
16889220 TATAAGGGCCAACTACCAGCACCCATCGCACATCATGGGCGCACACCCCCCCGGCCCATTCGATC
455 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC-CCCGATC
* * * **
16889285 GTCGGAACCCAAATGCCGTCGGTAAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCAAAGAAG
519 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAGTGAAG
* * * *
16889350 AAAAATACGACACCAGCAAATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGATCCAA
584 AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CCTC--TC-GATCC-A
* * *
16889415 TCTTAGACTGGGAATGAACACCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACA
644 TCTTAGA-TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * *
16889480 CACGAAACGAGCGTACGGGCGCTCAGCC-AGCCAGAGGGGTGGGATGCTCCAGTCAGGGATCGGT
708 CACGAAACGAGCGTGCGGGCGCTCAGCCGA-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT
* * * *
16889544 CGGGTCCCCCTCTGCGTGTTGCCGATCCTG-T-TGCTGCAACCCTCGGTCCGATCCGATCTTAGT
772 -GGGTCCCCCTCTGCGTGCTGTCGATCCTGCTAT-C-GCAACCCTCGGTCCGGTCCGATCTTAGA
* *
16889607 CTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAACGGGCA-AGCAGGCGGGCGG
834 CTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAA--GGCAGAGCGGGCGGGCGG
* * * *
16889669 GCACTACGCTGGCCAAAGAGATGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* **
16889734 GGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
66 GGCACATCCTCATATTTCTACCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
16889799 C-CTAAGCCTTCACGAGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
131 CTC-AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
** * * *
16889863 ACTTTTTGGGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTAGTAGA
195 ACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
16889928 CGTTATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
259 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
16889993 TTGTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
324 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
16890058 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGCATAGGGGGCCA
389 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
** * *
16890123 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCATATACCCCCCCGGACCCCCGATC
454 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATC
* *
16890188 ATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAGTGAAG
519 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAGTGAAG
* *
16890253 AAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGTAACCTTCAATTCGATCCGA
584 AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC-TC---TCGATCC-A
16890318 TCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
644 TCTTAGA-TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * *
16890383 CACGGAACGAGC-TGCGGGTGCTCAACCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTA
708 CACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT-
* * * * *
16890447 GGGTCTCCCTCCGCGTGCTATCGATCCTGCTATCGTAACCCTCGGTCTGGTCCGATCTTAGACTG
772 GGGTCCCCCTCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
** **
16890512 GGAACAAACTCTGTATGCCTAAGGAAACCGACGAAACG-A-GCAGA-CGGGCGGGCGG
837 GGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAAGGCAGAGCGGGCGGGCGG
* * * *
16890567 GCACTACGTCGGCGAGAGAGACGGGATGCAG-ACGCCGTGGATCGATATGGTGGTAGGTGGGTTT
1 GCACTACGCCGGCCAGAGAGACGGGATGC-GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
16890631 AGGCACATCCTCATATTTCTACGTGGCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTC
65 AGGCACATCCTCATATTTCTACCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * **
16890696 CCTCAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCGTTTTTTATTTTTCACGATTTTCAAA
130 CCTCAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * *
16890761 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTAGGAAGGAATTTTGACCCCAAACTTGGTATA
195 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTA-GAAGGAGTTTTGGCCCCAAACTTGGTAGA
16890826 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
259 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
16890891 TTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAACGGCTACTGACAGCAAACCT
324 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
16890956 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTACTCGAGGTTTGATGA-GGATTAGGGGTCC
389 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA-TAGGGGGCC
* * * * *
16891020 AAAATAGGGGCCAAGTACCATCACCCATTGCACATCATATGCGCACACCCCCCTCGGCCCCCCCG
453 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGG-CCCCCCG
* * * * *
16891085 ATCGTCGGAACCCCAATGCCGCCGGTCTGGTTCTTCGGCGATGGTCCGACGATGGTGCCCCGGTG
516 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAGTG
** * *
16891150 AAGAAAAATGA-GGCACCAGCACATGCCCGAGCTTAACATGTGCTGTCGCAACC-CTCGAT-C--
581 AAGAAAAAT-ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTCTCGATCCAT
*
16891210 C-------GG--T---CT--G-AT-CTTTGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
645 CTTAGATGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * * *
16891259 TGAAACGAGCGTGCGGGCGCTCAGCCGGCTAGAAGGGCGGGATACGCAAGCTGAGGATCGACTGG
710 CGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-GTGG
* * * * * * *
16891324 GTCCCCCTCTGCGTGCTGTTGATCCTACTACCACAACCCTCGATCCGGTCCAATCTTAGACTAGG
774 GTCCCCCTCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGG
*
16891389 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGC-GAGCGGGCGGGCGG
839 AATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAA--GGCAGAGCGGGCGGGCGG
* * * *
16891446 GCGCTATGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTA
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * * *
16891511 GGCACATCTTCATATTTCTGCCTGCCAATGCCATTTTTATTGCTTGTAAATTCATACACTTGTCC
66 GGCACATCCTCATATTTCTACCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
16891576 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTTAAA
131 CTCAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
** * * *
16891641 CTTTTTATAGTTCGGGATTTTTTTAAAATATTTTCAGAAGGAGTTTTGGCCCTAAACTTGGTAGA
196 CTTTTTACGGTTCGAGA-TTTTTTAAAAT-TTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
16891706 CGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAAAAGA
259 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
16891771 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
324 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
16891836 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGGCC
389 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGGGGCC
* ** *
16891901 AATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGTGCACCCCCCCAGCCCCCCCGA
453 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-GGCCCCCCGA
*
16891966 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGGCGATG
517 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATG
16892008 GTGCCCGGTG
Statistics
Matches: 2075, Mismatches: 236, Indels: 80
0.87 0.10 0.03
Matches are distributed among these distances:
874 47 0.02
875 128 0.06
876 3 0.00
878 5 0.00
879 199 0.10
880 261 0.13
881 63 0.03
883 2 0.00
891 1 0.00
894 1 0.00
895 5 0.00
897 8 0.00
898 464 0.22
899 6 0.00
900 109 0.05
901 2 0.00
902 126 0.06
903 188 0.09
904 451 0.22
905 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCCTCATATTTCTACCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTCAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGT
CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAGTGAAGAA
AAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTCTCGATCCATCTTAGA
TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
GAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTGGGTCCCCC
TCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
TCTGTATGCCTAAGCCAACCGACGAAACGAAGGCAGAGCGGGCGGGCGG
Found at i:16892127 original size:26 final size:26
Alignment explanation
Indices: 16892091--16892143 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16892081 GTTGACTTAG
16892091 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16892117 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16892143 G
1 G
16892144 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16894737 original size:24 final size:24
Alignment explanation
Indices: 16894702--16894747 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
16894692 GTTGACTTAG
*
16894702 GCATACAGAGTTCATTCTCAGTAA
1 GCATACAGAGTTCATTCCCAGTAA
16894726 GCATAC-GAAGTTCATTCCCAGT
1 GCATACAG-AGTTCATTCCCAGT
16894748 CTAAGATCGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.28
Consensus pattern (24 bp):
GCATACAGAGTTCATTCCCAGTAA
Found at i:16895631 original size:26 final size:26
Alignment explanation
Indices: 16895595--16895647 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16895585 GTTGACTTAG
* *
16895595 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
*
16895621 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
16895647 G
1 G
16895648 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:16899408 original size:26 final size:26
Alignment explanation
Indices: 16899372--16899422 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16899362 TTGACTTAGG
16899372 CATACGGAGTTCATTCACAGTCTAAA
1 CATACGGAGTTCATTCACAGTCTAAA
*
16899398 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCACAGTCTAA
16899423 GATTAGACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCACAGTCTAAA
Found at i:16899686 original size:901 final size:899
Alignment explanation
Indices: 16897347--16900351 Score: 4113
Period size: 890 Copynumber: 3.4 Consensus size: 899
16897337 GCCCATACGC
* * * * * *
16897347 CTTGCGCATCTCGTCTCTCTGGCTGGCGTAGTGCCCACCCGCCTGCCCACCTGCTCATTTCATCG
1 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC-GCCCGCCTGCTCATTTCGTCG
* * * * * * ** *
16897412 GTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCATACTGGATTGAGGGTTGTGGTAGC
65 ATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCAGCAGC
* ** *
16897477 AGGATCGGTAGCACGCAGAGGGGGACCC-AGCCGATCCCTGGCTTGCGCATGCCGCCCCTCTGGC
130 AGGATCGGCAGCTTGCAGAGGGGGACCCGA-CCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGC
* * * * * **
16897541 TGGCTGAGCACCCGCACGCTTGTGTCGTGGGTTGACTTAGCCGTACGTTGTTCATTCCTAGTCTA
194 CGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTA
* * * * * * *
16897606 AGCATACGGAGTTCATTCCCAGTCTAAGATTGGATTGGATCGGGGGTTGCGGTAGCACATTCTGG
259 AGCATACGGAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTACGGCAGCACATGCTGG
* *
16897671 GCTTC-GCCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGA
324 GC-TCAG-CATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGA
* * *
16897735 GAACCTGATCGGCGGCATTAGGGTTCCTG-CGATCAGGGGGGCC-GGGGGTGTGTGCACATGATG
387 GAACCTGACCGGCGGCATTGGGGTTCC-GACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATG
*
16897798 TGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
450 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * *
16897863 ACACCCCCTTAAAGAACATTTGAGATTTTACAAGTTTACTACTAGTAGCCATTAAAGTGTCTGAA
515 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-A
16897928 AAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
579 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * *
16897992 TTATGCATACCAAAAAAAATACAAGGATCACGTCTACTAAGTTTAGGGCAAAAACTCCTTCCGAA
644 TTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
** * *
16898057 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAACACGAGTCAT
709 AAAA-TTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
16898122 CTTCCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
773 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** *
16898187 GCATTGGCACACAGAAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
838 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
16898249 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----G--C-CCG--C-CC-GCTCATTTCGTCGA
1 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCGCCCGCCTGCTCATTTCGTCGA
* * * * * * *
16898303 ATGGCTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCAGCAGTA
66 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCAGCAGCA
* * * * **
16898368 GGATCGGTAGCTTGCAGAGGGGGACCCGACCGATCCCCGACTTGTGCATCGTGCCCCTCTGGCCG
131 GGATCGGCAGCTTGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
16898433 GCTGAGCACCCGCACGCACGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCCAAG
196 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG
* * * * ** * *
16898498 CATACGAAGCTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGC
261 CATACGGAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTACGGCAGCACATGCTGGGC
* * * * * *
16898563 TCAGGCAAGTGTTGGTGCCGCATTTTTCTTTGTCGGGGTACCATCATCAGAGCATCGTCGGAGAA
326 TCA-GCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * *
16898628 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCGCATCATGTGCGA
390 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* * *
16898693 TGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCAAGAACTCACACC
455 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
16898758 CCCTCAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
520 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
16898823 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
585 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
* * *
16898888 ATGCCAACAAAAATACTAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTTTGAAAAAATT
650 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATT
* *
16898953 TAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCA
715 TAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
16899018 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGG
780 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* ** * *
16899083 CATGCAGAAATATGAGGATGTGCCTAAATGCACCAACCACCCTATCAATCCACGG
845 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * **
16899138 CTTGCGCATCCCGTCTCTCTGGCCGATGTACTGCCCGCCCGCCAGCCCGCCTGCTCATTTTTTCG
1 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC-GCCCGCCTGCTCATTTCGTCG
* *
16899203 GTTGGCTTAGGCATACAGAGTTCATTACCAGTCTAAGATCAGACCGAACTGAGGGTTGCAGCAGC
65 ATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCAGCAGC
* * * * * *
16899268 AGGATCGGCAACTTGTAAAGTGGGACCCGACCGATCCCTGTCTTGTGCATCCCGCCCCTCTGGCC
130 AGGATCGGCAGCTTGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCC
*
16899333 GACTGAGC-CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCAC-AGTCTA
195 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC-CTAGTCTA
* *
16899396 AACATACGGAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTACGACAGCAC-TAGCTG
259 AGCATACGGAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTACGGCAGCACAT-GCTG
* * **
16899460 GGCTCAAGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTTGGAGCATCGCCAAA
323 GGCTC-AGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGA
* *
16899525 GAATCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGTGGCCGGGGGGTGTGCGCACATGATGT
387 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG-GGCCGGGGGGTGTGCGCACATGATGT
* * * * *
16899590 ACGATGGGTGCTGGTACTTGGCCCTAATATTGGCCCCCTAGCCCTCATCAAACCTTGAGAATTCA
451 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
16899655 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
516 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
16899720 TGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-GCAG-TTTTAGCTGAATTTTTT
581 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG-AGTTTTTAGCTGAATTTTTT
*
16899783 TATGCATGCCAACAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACTCCTTTCGAAA
645 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * *
16899848 GAATTTAAAAAAATCTCGAACCGTAAAAAG-TTTGAAAAATCATGAAAAATAGAAAACGAGTCGT
710 AAATTT-AAAAAATCTCGAACCGCAAAAAGTTTTG-AAAATCGTGAAAAATAGAAAACGAGTCGT
*
16899912 CTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATG
773 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
16899977 GCATTGGCATGCAGAAATATGAAGATGTACTTAAACCCACCTACCATCCTATCGATCCACGG
838 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
16900039 CTTGCGCATCCCGTCTCTCTGGTCGGCATAGTACCCGCCCGCCCGCCCG-CT-C-C-TTTCGTCG
1 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CCGCCCGCCTGCTCATTTCGTCG
* * * ** * *
16900100 ATTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATTAGACCGAACCAAGGGTTACGGCAGC
65 ATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCAGCAGC
* * ** ** *
16900165 AGGATCGACAGCTTGCATAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCTTGCCCCTCTGGCT
130 AGGATCGGCAGCTTGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
16900230 GGCTGAGCACCCGCATGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTAC-A
195 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGT-CTA
* * *
16900294 AGCATATGGAGTTCATTCCCAGTCTAAGA-TCGAACTGGACCGAGGGTTACGGTAGCAC
259 AGCATACGGAGTTCATTCCCAGTCTAAGATTAG-ACTGGACCGAGGGTTACGGCAGCAC
16900352 GTAGAAATAT
Statistics
Matches: 1852, Mismatches: 221, Indels: 64
0.87 0.10 0.03
Matches are distributed among these distances:
889 215 0.12
890 558 0.30
891 4 0.00
892 1 0.00
893 1 0.00
894 1 0.00
895 3 0.00
896 3 0.00
897 127 0.07
898 99 0.05
899 4 0.00
900 281 0.15
901 524 0.28
902 31 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCGCCCGCCTGCTCATTTCGTCGA
TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCAGCAGCA
GGATCGGCAGCTTGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCG
GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTACGGCAGCACATGCTGGGC
TCAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTT
AAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
Found at i:16900667 original size:368 final size:364
Alignment explanation
Indices: 16899989--16900719 Score: 967
Period size: 368 Copynumber: 2.0 Consensus size: 364
16899979 ATTGGCATGC
* *
16899989 AGAAATATGAAGATGTACTTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCCGTC
1 AGAAATATGAAGATGTACTGAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* *
16900054 TCTCTGGTCGGCATAGTACCCGCCCGCCCGCCCGCTCCTTTCGTCGATTGGCTTAGGCATACGGA
66 TCTCTAGTCGGCATAGTACCCGCCCGCCCGCCCGCTCCTTTCATCGATTGGCTTAGGCATACGGA
* *
16900119 GTTCATTTCCAGTCTAAGATTAGACCGAACCAAGGGTTACGGCAGCAGGATCGACAGCTTGCATA
131 GTTCATTTCCAGTCTAAGATCAGACCGAACCAAGGGTTACGGCAGCAGGATCGACAGCTT-CAGA
** * * * * *
16900184 GGGGGACCCGGTCGATCCCTGGCTTGCGCATCTTGCCCCTCTGGCTGGCTGAGCACCCGCATGCT
195 GGGGGACCCGACCAATCCCCGGCTTACGCATCCTGCCCCTCTGGCTGGCTGAGCACCCGCACGCT
* * *
16900249 CATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTACAAGCATATGGAGTTCAT-TCC
260 CATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTACAAGCATACGGAGTTCATCT-C
**
16900313 CAGTCTAAGATC-GAACTGGACCGAGGGTTACGGTAGCACGT
324 CAGTCTAAGATCAG-ACCAGACCGAGGGTTACGGTAGCACGT
* *
16900354 AGAAATATGAAGATGTACTGAAACCCACCTACCACCCTATCGATCCATGGCTTGCGTATCCCGTC
1 AGAAATATGAAGATGTACTGAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
16900419 TCTTTAG-CTG-AT-GTAATGCCCGCCCGCCTACTGCCCGCTCGTTTCATCGGTTGGCTTAGGCA
66 TCTCTAGTCGGCATAGT-A--CCCGCCCGCC--C-GCCCGCTCCTTTCATCGATTGGCTTAGGCA
* * *
16900481 TATGGAGTTCA-TTCTCAGTCTAAGATCAGACC-AGACCGAGGGTTACGGCAGCAGGTTCGACAG
125 TACGGAGTTCATTTC-CAGTCTAAGATCAGACCGA-ACCAAGGGTTACGGCAGCAGGATCGACAG
**
16900544 CACTT-AGAGGGGGACCCGACCAATCCCCGGCTTACGCATCCTGCCCCTCTGGCTGGCTGAGCGT
188 --CTTCAGAGGGGGACCCGACCAATCCCCGGCTTACGCATCCTGCCCCTCTGGCTGGCTGAGCAC
* * *
16900608 CCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTTATTCCCAGT-CTAAGCATACGGA
251 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTAC-AAGCATACGGA
* *
16900672 GTTCATCTCTAGTCTAAGATCAGACCAGATCGAGGGTTACGGTAGCAC
315 GTTCATCTCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAC
16900720 ATGTTAGGCT
Statistics
Matches: 319, Mismatches: 34, Indels: 23
0.85 0.09 0.06
Matches are distributed among these distances:
362 2 0.01
363 3 0.01
364 2 0.01
365 76 0.24
367 6 0.02
368 225 0.71
369 2 0.01
370 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.25
Consensus pattern (364 bp):
AGAAATATGAAGATGTACTGAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTAGTCGGCATAGTACCCGCCCGCCCGCCCGCTCCTTTCATCGATTGGCTTAGGCATACGGA
GTTCATTTCCAGTCTAAGATCAGACCGAACCAAGGGTTACGGCAGCAGGATCGACAGCTTCAGAG
GGGGACCCGACCAATCCCCGGCTTACGCATCCTGCCCCTCTGGCTGGCTGAGCACCCGCACGCTC
ATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTACAAGCATACGGAGTTCATCTCCA
GTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCACGT
Found at i:16901535 original size:26 final size:26
Alignment explanation
Indices: 16901496--16901547 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16901486 TTGACTTAGC
*
16901496 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGATCATTCCCAGTCTAAG
*
16901522 CATACGGAGATCATTCCCGGTCTAAG
1 CATACGGAGATCATTCCCAGTCTAAG
16901548 ATCGATTGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
CATACGGAGATCATTCCCAGTCTAAG
Found at i:16902710 original size:877 final size:875
Alignment explanation
Indices: 16901521--16906889 Score: 6193
Period size: 877 Copynumber: 6.1 Consensus size: 875
16901511 CCCAGTCTAA
* * * ** **
16901521 GCATACGGAGATCATTCCCGGTCTAAGATC-GATTGGACCGAGGGTTGCGATAGCACATGCTAGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
* * * * * *
16901585 CTCGAGCATGTGTTGGTGCCACATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
16901650 ACCTAACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCACACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
16901714 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
16901779 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
16901844 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
16901909 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAGA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* * * * *
16901974 TTTTAAAAAATCTGAAACCGTAAAAAGTTTCAAAAATTATGAAAAATAAAAAACGAGTTGTCTTA
456 TTTTAAAAAATCTGAAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
16902039 CCATGAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
16902104 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC-C
586 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGC
* * *
16902168 ATCCCGTCTCTCTGGCTGACGTAGTGCTAGCCCGCCCGCCCGCCCACTCATTTCATCCGTTGGCT
651 ATCCCGTCTCTCTGGCCGACGTAGTGCTAGCCCGCCCGCCCGCCCACTCGTTTCATCGGTTGGCT
* * * * **
16902233 TAGGCATACGGAGTTCATTACCAGTCTAAGATAAGATCAGATCGAGGGCTGCGGTAGCAGGATCA
716 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGA-CGGATCGAGGGTTGCGACAGCAGGATCA
* * *
16902298 GCAGCTCGCAGAGGGGGACCCTGTCGATCCCTAGCCTGTGCATCTCG-CCCTCCTGGCCGGCTAA
780 GCAGCTCGCAGAGGGGGACCCGGTCGATCCC-AGCCTGTGCATCCCGCCCCT-CTGGCCGGCTGA
* *
16902362 GCACCCGTACGCTCGTTTCGTGGGTTGACTTAG
843 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
16902395 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTATG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
* * *
16902460 CTCAGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
16902525 ACCTGACCTG-CGGCATAGGGGTTCCGATGATCGGGGGGGCCTAGGGGGTGTGCGCACATGATGT
131 ACCTGACC-GACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* **
16902589 GCGATGGGTGCTGTTACTTGGCCCTTATATTGGCCCCCTATCCCTTGTCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
16902654 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGGAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
16902719 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** * * * *
16902784 GTGCAAGCCAACAAAAATACAAGGATCATTTCTCCCCTA-TTTGGGGCCAGAACTCCTTTCAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCT-ACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* ** * * * *
16902848 AAATTTAAAAAAATCACAAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCATC
453 AAATTTTAAAAAATCTGAAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
*
16902913 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
16902978 CATTGGAACATAGAAATATGAACA-GATGCCTAAACCCACCTATCACCCTATCGATCCACGGCTT
583 CATTGGCACGTAGAAATATGAAGATG-TGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
** ** * *
16903042 GCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCACCCACTTGTTTCATCGGTT
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCTAGCCCGCCCGCCCGCCCACTCGTTTCATCGGTT
* * ** *
16903107 GGCTTAGGCATAC-GAGTTCATT-CCATGCCTAAGATCAGACCGGATCGAGGGTTATGACAGCAA
712 GGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATTAGA-CGGATCGAGGGTTGCGACAGCAG
* * * * * * * *
16903170 GATCAACAGCACACAGAGGGGGACCTGGCCGATCCTAGGCT-TGCACATCCCGCCCCTCTGGCCA
775 GATCAGCAGCTCGCAGAGGGGGACCCGGTCGATCCCAGCCTGTG--CATCCCGCCCCTCTGGCCG
** *
16903234 GCTGAGCGCCCGCACGCTCGTTTCGTGCATTAAAC-TAG
838 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTT-GACTTAG
*
16903272 GCATACGGAGTTCATTCCCAGTCTAAGGATACGGAGTTCATTCCAGTCTAGGATCGGATCAGACC
1 GCATACAGAGTTCATTCCCAGTCTAA-GAT-C-G-G---A---C---C--GGA-C----C-GA--
* ** * *
16903337 GAAGGGTGCATCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
43 G--GGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* ** * *
16903402 ACCATCGTCTGAGCATCACCAGAGAACCTGACCGACGACATTGGGGTTCCGACGATC-GGGGGGC
106 ACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
* **
16903466 CGGGGGGTGTGCGCACATCATGTGCGATGATTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
171 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
16903531 CCTCATC-AACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
236 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
16903594 AGTAGCCATTAAAGTGTCAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
301 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
16903659 CTAGTTTTTAGCTGAATTGTTTTT-TCACATGCCAACAAAAATAAAAGGATCACGTCTACCAAGT
366 CGAGTTTTTAGCTGAATT-TTTTTGT-GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * **
16903723 TTGGGGCCAAATCTCCTTCCGAAAAAATTTTAAAAAATCTTG-AACCGTAAAAAGTTTTAAAAAT
429 TTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATC-TGAAACCGTAAAAAGTTTCGAAAAT
* *
16903787 -AGTGAAAATTAGAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
493 CA-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
16903851 TATGAATTTACAAGCCATCAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAATCCAC
557 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
* * * * * *
16903916 CTACCACCCGATCGATCCACGGCTTACGCATCCCATCTCTCTAG-C--CG--GTG-TAG--TGCC
622 CTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTAGCCCGCC
* * *
16903973 CACCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCCTACGGAGTTCATTCCCAGTCTAAGATTAGA
687 CGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGA
* * * * * * * * *
16904038 CTGGA-CTGAGGGTTACGACAGTAGGATCGGTAGCACGCAGAGGGGTACCCGGTTGATCCCCGAC
752 C-GGATC-GAGGGTTGCGACAGCAGGATCAGCAGCTCGCAGAGGGGGACCCGGTCGATCCCAGCC
*** * *
16904102 T-TACGCATGTTGCCCCTCTGGCCGGCTGAGCGCCCGTAAGCTCGTTTCGTGGGTTGACTTAG
815 TGT--GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
16904164 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATTGGACCAGAC
1 GCATACAGAGTTCATTCCCAGTCTAAG-AT-C-G-G-------AC---C--------G----GAC
* * * * *
16904229 CGAGGGTTGTGGTAGCACATGCTCGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTC-ACGGGG
40 CGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGG
* * * *
16904293 GCACCATCGTTGGAGCATCGTCGGAGAACCTGACC-AGCGGAATTGGTGTTCTGACGATCGGGGG
104 GCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGG
* * * * *
16904357 GGCCGGGGGGGAGGGTGTGCGCATCATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCT
168 GGCC--GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
16904422 CCTATCCCTCATTAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
230 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * **
16904487 GCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAATATAGTGT
295 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
16904552 ACACTTTGAGTTTTTAGCTGAATTTCTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACC
360 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* *
16904617 -AGTTTGGTGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAATCAC--AAAAAGTTTCG
425 AAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCT-GAAAC-CGTAAAAAGTTTCG
* *
16904679 AAAATCATGAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
488 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * *
16904744 ATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAAAC
553 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* * *
16904809 CCACCAACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGCGCCCA-C
618 CCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CTAGC
* * * * *
16904873 CCCCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCTTTCCCAGTCTAAGA
682 CCGCCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * *
16904938 TTAGACCAGACCGAGGGTT-CCAGCAGTAGGATCAGCAGCAT-GCAGAGGGGGACCCGGTCGATC
747 TTAGA-CGGATCGAGGGTTGCGA-CAGCAGGATCAGCAGC-TCGCAGAGGGGGACCCGGTCGATC
* * * * *
16905001 CCCGTCTTGTGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTAACT
809 CCAG-CCTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
*
16905066 TGG
873 TAG
*
16905069 GCATACAGAGTTCATTCCCAGTCTAAGCATACAGGGTTCATTCCCAGTCTAACATCGGATTGGAT
1 GCATACAGAGTTCATTCCCAGTCTAAG-AT-C--GG---A---CC-G---GAC--C------G--
* * * *
16905134 CAAGGGTTGCGGCAGCACATGCTGGGCTCGAGCAGGTGCTGGTGCCGCATTTTACTTCGTCGGGG
42 --AGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * ** *
16905199 CACCA-------A-CA-C--CGGAGAACCTAACCGGCGGCATTGGGGTTCCGACGATCAAGGGTG
105 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
*
16905253 TCGGGGGG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
170 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
16905317 CCCTCATCAAACCTCGAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
235 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
16905382 CAGTAGCCATTAAAGTGTCTAAAATGTGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACT
300 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* **
16905447 TCGAGTTTTTAGCTGAATTTTTTTGTGTATGCCAACAAAAATACAACAATCACGTCTACCAAGTT
365 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * *
16905512 TGGGGCCAAAAATGCTTTCGAAAAAATTTTAAAAAATCACG-AACCATAAAAAGTTTTGAAAATC
430 TGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATC-TGAAACCGTAAAAAGTTTCGAAAATC
*
16905576 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTA
494 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* ** *
16905641 TGAATTTACAAGCCTTAAAAATGGCATTGGCACACAGAAATATGAAGATATGCCTAAACCCACCT
559 TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT
* *
16905706 ACCACCCTATCGATCCACAGCTTGCACATCCCATCTCTCTGGCCGACGTAGTGCCT-GCCCGCCC
624 ACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CTAGCCCGCCC
* * ** *
16905770 GCCTG----CTTGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGAT
688 GCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGA-
* * * * * * *
16905831 CGGACCAAGGGTTGCGATAGCA--AGCAGCA--T-GCAGAGGGGGACCCAGTCGATCCCCGGCT-
752 CGGATCGAGGGTTGCGACAGCAGGATCAGCAGCTCGCAGAGGGGGACCCGGTCGATCCCAGCCTG
** *
16905890 TGCGTATCCCGCCCCTCTGGCCGGCTGAGCGCATGCACGCTCATTTCGTGGGTTGACTTAGGCAT
817 TGC--ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT-GG--G---T-----T
16905955 ACGGAGTTCATTCCCAG
869 ---GA---C-TT---AG
* * *
16905972 TCACAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATG
1 -----GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATG
* * *
16906037 TTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGG---CA----C----CATCGTC
61 CTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC
* * *
16906091 GGAGAACTTGACCGACGGCATTGGGGTTCTGGCGAT-GGGGGGGCCGGGGGGTGTGCGCACATGA
126 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
* *
16906155 TGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
191 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
16906220 TCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
16906285 AAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTT
* * * * * *
16906350 TTTTGTACGTGCCAACAAAAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCT
385 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* *
16906415 AAAAAATTTTAAAAAATCT-AGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGT
450 AAAAAATTTTAAAAAATCTGA-AACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGT
*
16906479 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAA
514 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
16906544 ATGGCATTGGCAGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATAG
579 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAG
* * * * *
16906609 CTTGCGCATACCGTCTCTCTGGCCGATGTAGTGCCCA-CTCGCCCGCCCGCTCA-T--TTT-ATC
644 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CTAGCCCGCCCGCCCGCCCACTCGTTTCATC
* * * * * *
16906669 GCTTGGCTTATGCACACGAAGTTCATTCTCAAG-CTAAGATCAGACTGGATCGAGGGTTGCG---
708 GGTTGGCTTAGGCATACGGAGTTCATTC-CCAGTCTAAGATTAGAC-GGATCGAGGGTTGCGACA
* ** * * *
16906730 GCAGCAT--G-A--TCG-A-A-GGGGACCCGACCGATCCCAGGCTTGCGCATCCCGCCCCACTGG
771 GCAGGATCAGCAGCTCGCAGAGGGGGACCCGGTCGATCCCA-GCCTGTGCATCCCGCCCCTCTGG
** * *
16906787 CTAGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
835 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
16906828 GCATAC-GAAGTTGATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGGCAGCACATGCT
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
16906890 GGGTGTCATG
Statistics
Matches: 3890, Mismatches: 438, Indels: 357
0.83 0.09 0.08
Matches are distributed among these distances:
850 1 0.00
851 54 0.01
856 2 0.00
859 2 0.00
860 1 0.00
863 2 0.00
866 1 0.00
871 1 0.00
874 28 0.01
875 116 0.03
876 19 0.00
877 617 0.16
878 81 0.02
879 10 0.00
880 10 0.00
881 13 0.00
882 350 0.09
883 331 0.09
884 7 0.00
885 7 0.00
886 2 0.00
887 66 0.02
888 3 0.00
889 1 0.00
890 230 0.06
891 279 0.07
892 158 0.04
893 113 0.03
894 52 0.01
895 2 0.00
896 13 0.00
897 273 0.07
898 185 0.05
899 377 0.10
900 70 0.02
901 16 0.00
902 104 0.03
903 3 0.00
904 5 0.00
905 248 0.06
906 7 0.00
907 3 0.00
908 27 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (875 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
TTTTAAAAAATCTGAAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCTAGCCCGCCCGCCCGCCCACTCGTTTCATCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACGGATCGAGGGTTGCGACAGCAGGATCAG
CAGCTCGCAGAGGGGGACCCGGTCGATCCCAGCCTGTGCATCCCGCCCCTCTGGCCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:16903303 original size:26 final size:24
Alignment explanation
Indices: 16903268--16903329 Score: 90
Period size: 26 Copynumber: 2.5 Consensus size: 24
16903258 GTGCATTAAA
16903268 CTAGGCATACGGAGTTCATTCCCAGT
1 CTAGG-ATACGGAGTTCATT-CCAGT
16903294 CTAAGGATACGGAGTTCATTCCAGT
1 CT-AGGATACGGAGTTCATTCCAGT
16903319 CTAGGAT-CGGA
1 CTAGGATACGGA
16903330 TCAGACCGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
23 4 0.11
24 5 0.14
25 7 0.20
26 16 0.46
27 3 0.09
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (24 bp):
CTAGGATACGGAGTTCATTCCAGT
Found at i:16903893 original size:899 final size:898
Alignment explanation
Indices: 16902395--16906854 Score: 5785
Period size: 882 Copynumber: 5.0 Consensus size: 898
16902385 GTTGACTTAG
* * *
16902395 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTATG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
* * * **
16902460 CTCAGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GAGCATCACCGGAGA
* * *
16902525 ACCTGACCTG-CGGCATAGGGGTTCCGATGATCGGGGGGGCCTAGGGGGTGTGCGCACATGATGT
130 ACCTGACC-GACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* **
16902589 GCGATGGGTGCTGTTACTTGGCCCTTATATTGGCCCCCTATCCCTTGTCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
16902654 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGGAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
16902719 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * ** * * * *
16902784 GTGCAAGCCAACAAAAATACAAGGATCATTTCTCCCCTA-TTTGGGGCCAGAACTCCTTTCAAAA
388 -TACATGCCAACAAAAATACAAGGATCACGTCT-ACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * * * ** * *
16902848 AAATTTAAAAAAATCACAAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCATC
451 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATAGTGAAAAATAGAAAACGAGTCGTC
*
16902913 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
16902978 CATTGGAACATAGAAATATGAACA-GATGCCTAAACCCACCTATCACCCTATCGATCCACGGCTT
581 CATTGGCACGTAGAAATATGAAGATG-TGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
* *
16903042 GCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCACCCACTTGTTTCATCGGTT
645 GCGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCG-CC-CCCACTTGTTTCGTCGGTT
* * * *
16903107 GGCTTAGGCATAC-GAGTTCATT-CCATGCCTAAGATCAGACCGGATCGAGGGTTATGACAGCAA
708 GGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATTAGACCGGACCGAGGGTTACGACAGCAA
* * * ** * *
16903170 GATCAACAGCACACAGAGGGGGACCTGGCCGATCCTAGGCTTGCACATCCCGCCCCTCTGGCCAG
772 GATC-ACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
** *
16903235 CTGAGCGCCCGCACGCTCGTTTCGTGCATTAAAC-TAGGCATACGGAGTTCATTCCCAGTCTAA
836 CTGAGCGCCCGCACGCTCGTTTCGTGGGTT-GACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
16903298 GGATACGGAGTTCATT-CCAGTCTAGGATCGGATCAGACCGAAGGG-TGCATCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG-AGGGTTGCGGCAGCACATGCTAG
* *
16903361 GCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCTGAGCATCACCAGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GAGCATCACCGGAG
* *
16903426 AACCTGACCGACGACATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATCATGTG
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
**
16903490 CGATGATTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
16903554 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCAGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
16903618 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTGTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTT
* * *
16903683 TCACATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAATCTCCTTCCGAAAA
388 T-ACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * * *
16903748 AATTTTAAAAAATCTTGAACCGTAAAAAGTTTTAAAAATAGTGAAAATTAGAAAACGAGTCGTCC
452 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATAGTGAAAAATAGAAAACGAGTCGTCT
*
16903813 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATCAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
16903878 ATTGGCACGTAGAAATATGAAGATGTGCCTAAATCCACCTACCACCCGATCGATCCACGGCTTAC
582 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
* * * * *
16903943 GCATCCCATCTCTCTAGCCGGTGTAGT----GCCCACCCG--CCCACTCGTTTCGTCGGTTGGCT
647 GCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCCCCCACTTGTTTCGTCGGTTGGCT
* * * * *
16904002 TAGGCCTACGGAGTTCATTCCCAGTCTAAGATTAGACTGGACTGAGGGTTACGACAGTAGGATCG
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTACGACAGCAAGATC-
** * * * * ***
16904067 GTAGCACGCAGAGGGGTACCCGGTTGATCCCCGACTTACGCATGTTGCCCCTCTGGCCGGCTGAG
776 ACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
16904132 CGCCCGTAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
16904190 GCATACGGAGTTCATTCACAGTCTAAGATTGGACCAGACCGAGGGTTGTGGTAGCACATGCTCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
* * * **
16904255 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTC-ACGGGGGCACCATCGTTGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCG-TCGAGCATCACCGGAG
* * * * * * *
16904319 AACCTGACC-AGCGGAATTGGTGTTCTGACGATCGGGGGGGCCGGGGGGGAGGGTGTGCGCATCA
129 AACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGG-GTGTGCGCACATGA
* *
16904383 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATTAAACCTCGAGAAC
190 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
16904448 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTG
255 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* ** *
16904513 AAATGGGGACACTTTTTTCAAATGGTCACAATATAGTGTACACTTTGAGTTTTTAGCTGAATTTC
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-
* * * *
16904578 TTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACC-AGTTTGGTGCCAAAACTCCTTTCGA
384 TTTTTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
* ** * * *
16904642 AAAAATTTTAAAAAATCTCGAATCACAAAAAGTTTCGAAAATCA-TGAAAAATAAAAAACAAGTC
449 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAAT-AGTGAAAAATAGAAAACGAGTC
*
16904706 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAA
513 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
16904771 TGGCATTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCAACCACCCTATCGATCCACAGC
578 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGC
* * * * * *
16904836 TTGCGCATCCCGTCTCTCTGGCCGACGTAGCGCCCACCCCCCCGTCCGCCCGCTCGTTTCGTCGG
643 TTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCG-CC-CCCACTTGTTTCGTCGG
* * * *
16904901 TTGGCTTAGGCATACGGAGTTCTTTCCCAGTCTAAGATTAGACCAGACCGAGGGTT-CCAGCAGT
706 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTACGA-CAGC
* * * * *
16904965 AGGATCAGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGTCTTGTGCATCCCACCCCTCTGGCC
770 AAGATCA-CAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
16905030 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTAACTTGGGCATACAGAGTTCATTCCCAGTCTAA
834 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *** * * *
16905095 GCATACAGG-GTTCATTCCCAGTCTAACATCGGATTGGATCAAGGGTTGCGGCAGCACATGCTGG
1 GCATAC-GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAG
* * *
16905159 GCTCGAGCAGGTGCTGGTGCCGCATTTTACTTCGTCGGGG---CA-C--C-A--A-CACCGGAGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAGCATCACCGGAGA
* * ** * *
16905214 ACCTAACCGGCGGCATTGGGGTTCCGACGATCAAGGGTGTCGGGGGG-GTGCGCACATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
16905278 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
16905343 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
16905408 TGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-T
** ** * *
16905473 GTATGCCAACAAAAATACAACAATCACGTCTACCAAGTTTGGGGCCAAAAATGCTTTCGAAAAAA
389 ACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* *
16905538 TTTTAAAAAATCACGAACCATAAAAAGTTTTGAAAATCA-TGAAAAATAGAAAACGAGTCGTCTT
454 TTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAAT-AGTGAAAAATAGAAAACGAGTCGTCTT
* *
16905602 GCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * *
16905667 TTGGCACACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCA
583 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
* * * ** *
16905732 CATCCCATCTCTCTGGCCGACGTAGTGCCTGCCCGCCCG--CCTGCTTGTTTTGTCGGTTGGCTT
648 CATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCCCCCACTTGTTTCGTCGGTTGGCTT
* * * * *
16905795 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCAAGGGTTGCGATAGCAAG----C
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTACGACAGCAAGATCAC
* * *
16905856 AGCATGCAGAGGGGGACCCAGTCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGCCGGCTGAGCG
778 AGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
** *
16905921 CATGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC-ACA
843 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA-A
* * * *
16905977 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGTTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
* *
16906042 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCA---TC--G--T---CGGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAGCATCACCGGAGAA
* * * *
16906097 CTTGACCGACGGCATTGGGGTTCTGGCGAT-GGGGGGGCCGGGGGGTGTGCGCACATGATGTGTG
131 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
16906161 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCATAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
16906226 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
16906291 GGACACTTTTTTTAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTTGT
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTT-T
* * * * *
16906356 ACGTGCCAACAAAAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCTAAAAAA
389 ACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* *
16906421 TTTTAAAAAATCTAGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATAGTGAAAAATAGAAAACGAGTCGTCTTG
*
16906486 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
16906551 TGGCAGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGC
584 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGC
* * * * * * * *
16906616 ATACCGTCTCTCTGGCCGATGTAGTGCCCACTCGCCCGCCCGCTCAT-TTT-ATCGCTTGGCTTA
649 ATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCCCCCACTTGTTTCGTCGGTTGGCTTA
* * * * * * * * * *
16906679 TGCACACGAAGTTCATTCTCAAG-CTAAGATCAGACTGGATCGAGGGTTGCGGCAGCATGAT---
714 GGCATACGGAGTTCATTC-CCAGTCTAAGATTAGACCGGACCGAGGGTTACGACAGCAAGATCAC
** * * ** * *
16906740 ----CG-A-A-GGGGACCCGACCGATCCCAGGCTTGCGCATCCCGCCCCACTGGCTAGTTGAGCA
778 AGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *
16906798 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTGATTCCCAGTCTAA
843 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
16906854 G
1 G
16906855 ATTGGACCAG
Statistics
Matches: 3123, Mismatches: 379, Indels: 136
0.86 0.10 0.04
Matches are distributed among these distances:
877 94 0.03
878 2 0.00
879 1 0.00
880 1 0.00
881 13 0.00
882 422 0.14
883 331 0.11
884 6 0.00
885 6 0.00
887 69 0.02
888 2 0.00
889 3 0.00
890 223 0.07
891 272 0.09
892 167 0.05
893 119 0.04
894 47 0.02
895 9 0.00
896 5 0.00
897 280 0.09
898 172 0.06
899 387 0.12
900 65 0.02
901 17 0.01
902 122 0.04
903 18 0.01
904 2 0.00
905 265 0.08
906 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAGCATCACCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTAC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATT
TTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCAT
CCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCCCCCACTTGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTACGACAGCAAGATCACAGC
ACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16904200 original size:26 final size:26
Alignment explanation
Indices: 16904164--16904216 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16904154 GTTGACTTAG
*
16904164 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
16904190 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
16904216 G
1 G
16904217 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:16905107 original size:26 final size:26
Alignment explanation
Indices: 16905069--16905120 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16905059 GTTAACTTGG
16905069 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16905095 GCATACAGGGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16905121 CATCGGATTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16914148 original size:26 final size:26
Alignment explanation
Indices: 16914111--16914160 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16914101 GTTGACTTAG
*
16914111 GCATACAGAGTTCATTCCCAGTCTGA
1 GCATACAGAGTTCACTCCCAGTCTGA
16914137 GCATAC-GCAGTTCACTCCCAGTCT
1 GCATACAG-AGTTCACTCCCAGTCT
16914161 AAGATCGGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTGA
Found at i:16915044 original size:26 final size:26
Alignment explanation
Indices: 16915008--16915060 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16914998 GTCGACTTAG
16915008 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
16915034 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16915060 G
1 G
16915061 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16915241 original size:897 final size:886
Alignment explanation
Indices: 16913007--16917985 Score: 5354
Period size: 897 Copynumber: 5.6 Consensus size: 886
16912997 CCGGTGTAGT
** *
16913007 GCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
1 GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
* ** ** * * * *
16913072 AGA-C-CGGATTGAGGGTTGCAGAAGCAAGATCGGTAGCACGCAGAGGGTGACCC-AGCCGATCC
66 AGACCACCGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGTAGAGGGGGACCCGA-CCGATCC
** * * * * * *
16913134 CCGGCTTATGCATCCTGCCCCTCTGGCCGACTGAGCGCTCGCACGCTCATTTCGTGGGTTGATTT
130 CCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * * *
16913199 AGGCATACGGAGTTCATTCCCAGTCTAAGCGTACAGAGTTCATTCCCAGTCTAAGATTGGACC-G
195 AGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* * * * * *
16913263 AACCGAGGGTTGCGGCAGCACATGATGGGCTCAGGCATGTGCTGGTACCGCATTTTTCTTTGCCG
260 -ACCGAGGGTTGCGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * * * * * * *
16913328 GGGCACCATC-GCTAGAGCATTGTCGGAGAACTTGGCTGGCGGCATTGGGGTTCCGTCGATCGGG
324 GGGCACCATCATC-GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
* * *
16913392 GGGCTAGGGTGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
388 GGGGT-CGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * * * * *
16913457 CCTTATCCTTCATCAAAACTCGAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACTGGTT
451 CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * *
16913522 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
516 TACTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTG
16913587 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
581 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-----------AC-A--AT-A-G--T-C
* * * * *
16913652 CAAGTTTGGGGCCAAAAATACTTCCT-AAAAAATTTTAAAAAATCCTGAACCACAAAAAG-TTTA
627 CAAGTTTGGGACCAAAACTCCTT-CTAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTA
16913715 GAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
691 -AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
16913780 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAACATGTGCCTAAA
755 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
* * * * * *
16913845 CTCACCTAAACCCACCTACAACGCTATCGATTCACGGCTTGCGCATCCCGTCTCTCAGGCTGGCA
820 --C-CC---ACCTACC-AC--C-CTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCG
16913910 TAGT----GCCC
875 TAGTGCCCGCCC
* * * * * *
16913918 GCCCGCCCGCCCACTCATTTCGTCGATTCGCTTAGGCATACGCAGTTCATTCCCAGTCTAAGATT
1 GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
* ** * **
16913983 AGACCA--GACCGAGGGTTGTGGCAGCAAGATCGACAGTACGTAG-GGGGGACCCGGTCGATCCC
66 AGACCACCGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGTAGAGGGGGACCCGACCGATCCC
* * * **
16914045 CGGCTTGCGCATCCCACCCCTCTAGCTGGTTGAATGCCCGCACGCTCGTTTCGTGGGTTGACTTA
131 CGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * * *
16914110 GGCATACAGAGTTCATTCCCAGTCTGAGCATACGCAGTTCACTCCCAGTCTAAGATCGGA-CAGG
196 GGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA-G
*
16914174 ACCGAGGGTTGCGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGG
260 ACCGAGGGTTGCGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
* * * * * ** ** * *
16914239 GGCATCTTCGTCGGAGCATCGTCGGAGGACCTGACCGGTGGCATTTAGGTTCCGGCGATC-GAGG
325 GGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
* * *
16914303 GGTCGGGGGGGTGTGCGCAAATGATGCGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
390 GGTC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
16914368 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGAGTTTACAGGTTTAC
454 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTAC
16914433 TGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTAC
519 TGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTAC
* *
16914498 ACTTCGAGTTTTTAGCTGAA-TGTTTT-T-C-TG-C-AT-G-CCAAGTTTGGGACCAAATCTCCT
584 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGACAATAGTCCAAGTTTGGGACCAAAACTCCT
* * *
16914555 TCTAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTAAAAATCATGAAAAATAAAAAATG
649 TCTAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACG
16914620 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
714 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
16914685 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACA
779 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* *
16914750 CGGCTTGCGCATCCTATCTCTCTGGCCGACGTAGTGCCCGCCC
844 CGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCC
*
16914793 GCCCCGCCCGCCCGCTCGTTTCATCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
1 G-CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * ** * * *
16914858 TGGACGAGGGTTGCGGCAGCAGGACCGGACCGAGGGTTATGACAGCAACATCGATAACATGTAGA
65 T--A-GA---------C--C---ACC-GACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGTAGA
* * * * * *
16914923 GAGGGACCCGACCGATCACTGGCTTGTGCAACCCGCCCCTCTAGCCGGCTGAGCGCCCACACGCT
112 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCT
* *
16914988 CGTTTCGTGGGTCGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCTC
177 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCC
* ** * * *
16915053 AGTCTAAGATTGGACCAGACCGAGGGTTGCGATAACACATGCTGGGCTCAGGCAGGTGATGGTGC
242 AGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * ** *
16915118 TGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACTGGTGGCATTAG
307 CGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGG
* *
16915183 GGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCACACATGATGTGCGATGGATGCTGGTACTTGG
372 GGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * * *
16915248 CCCTTATATTCGCCCCCCATCACTCATCAAACCT-AGAGACCTCACACCCCCTTAAAGAGCATTT
437 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA-AGAACTCACACCCCCTTAAAGAGCATTT
* * * * *
16915312 GAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAAT
501 GAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAAT
* *
16915377 GGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
566 GATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-----------AC
* * *
16915442 AAGGATCACGTCTACTAAGTTTGAGG-CCAAAAATCCTTCTGAAAAAATTTTAACAAATCCCGAA
620 -A--AT-A-GTC--C-AAGTTTG-GGACCAAAACTCCTTCTAAAAAAATTTTAAAAAATCCCGAA
*
16915506 CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
676 CCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
16915571 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAG-AGAAATAT
741 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC-GCAGAAATAT
* *
16915635 GAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCGGTCTCTCTGGC
805 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGC
16915700 CGGCGTAGTGCCC-CCC
870 CGGCGTAGTGCCCGCCC
* * * * *
16915716 TCCC-CTCCG-TCGCTCGTTTCATCGGTTGGATTAGGCAT-TGGAGTTCATTCCTAGTCTAAGA-
1 GCCCGC-CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
16915777 TAGGATCA--GACCGAAGGTTGCGGCGGCAGGATCGGTAGCACATAGAGGGGGACCCGACCGATC
65 TA-GACCACCGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGTAGAGGGGGACCCGACCGATC
* * * * * *
16915840 CCCAGCTTACGCATCCCGCCCTTCTGGCCGGCTGAACGCCCGCATGCTCGTTTCGTGGGTTGAC-
129 CCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* *
16915904 T-----T----AG----------------GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCG
194 TAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
* * *
16915944 GACCGAGGGTTACGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
259 GACCGAGGGTTGCGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
** * * * **
16916009 GCTCACCATCACCGAAGCATTGCTAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG
324 GGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG
* * * * *
16916074 GGGCCGGGGGATGTGCACACATGATGTGTGATGGGTGCTGGTACTTGCCCCTTATATTGGCCCCC
389 GGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
16916139 TATTCCTCATCAAACCTCGAGAACT--CACCCCC-TAAAGAGCATTTGAGA-TTTACAGGTTTAC
454 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTAC
*
16916200 TGCCAGTAGCCATGTAAAAGTTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
519 TGCCAGTAGCCAT-T-AAAG-TGTTTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTG
* *
16916265 TACACTTTGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
581 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-----------AC-A--AT-A-G--T-C
* * * * * * *
16916330 CAAGTTTAGGGA-CAAAAATCCTCCCGAAAAAAA-TTTAAAAAATCCCAAACTGTAAAAATTTTT
627 CAAGTTT-GGGACCAAAACTCCT-TCTAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTT
** * *
16916393 AAAAATTGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGAC
690 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
16916458 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
755 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
* * *
16916523 CCCACCTACTA-CCTCATCGATCCACGGCTTGCGAAT-CTCGCCTCTCTGGCCGGCGTAGT----
820 CCCACCTACCACCCT-ATCGATCCACGGCTTGCGCATCCT-GTCTCTCTGGCCGGCGTAGTGCCC
*
16916582 GCCT
883 GCCC
* * * * *
16916586 GCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTATAAGATC
1 GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
* * * * * * * * *
16916651 ATACCA--GACTGAGGGTTGTGGTAGCAGGATCGGCAGCAGGTAGAGGGGGACCTGGCCAATCCA
66 AGACCACCGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGTAGAGGGGGACCCGACCGATCCC
* * * * * *
16916714 CAGCTTGCGTATCTCGCCCCTCT-GCCGGCTGAGCTCCCGCAAGCTCGTTTCGTCGGTTGACTTA
131 CGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* ** * * * *
16916778 GGCATACGGAGTTAATTCCTGATCTAAGCGTACGAAGTTCATTCCCAGTCTAAGATCAGATCAGA
196 GGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* *
16916843 CCGAGGGTTGTGGCATCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
261 CCGAGGGTTGCGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * **
16916908 GCACCATCATCGGAGCATCACCGGAGAACCAGACCGACGGCATTGGGGTTCTGGTGATC-GGGGG
326 GCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* *
16916972 G-CGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCT
391 GTC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
16917036 ATCCCTCATCAAACCTCAGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
455 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACT
* * * *
16917101 ACCAGTAGCCATTAAAGTGTTTGAAATGGGGACACCTTTTTCAAATGATGACAAAATCTTTTACA
520 GCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACA
* *
16917166 CTTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCTGG
585 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG---AC---AAT---A-G-T--C--C-A---AG
* * *
16917231 TTTGGGGCCAAAACTCCTT-TCAAAAAAATTTTAAAAAATCACGAACCG-AGAAAAGTTTTGAAA
631 TTTGGGACCAAAACTCCTTCT-AAAAAAATTTTAAAAAATCCCGAACCGCA-AAAAGTTTTAAAA
* *
16917294 ATCGTGAAAAATAGAAAACGAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
694 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
16917359 GTATGAATTTACAGGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
759 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
* *
16917424 CCTACCACCCTATCGATCCACGGCTTGTGCATCAC-GTCTCTCTGGCTGGCGTAGTGCCCGCCC
824 CCTACCACCCTATCGATCCACGGCTTGCGCATC-CTGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * * * * *
16917487 GCCCGTCTGCCCGCTCATTTCATCGGTTGGCATAGGCTTACAGAGTTCATTCCCAGTCTAAGATT
1 GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
* ** ** * ** * * * *
16917552 AGACCA--GATCGAGGGTTACGATAGCAGGATCGGTAACACACAAAAGAGGACTCGACCGATCCC
66 AGACCACCGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGTAGAGGGGGACCCGACCGATCCC
* ** * * * * * *
16917615 CGGCTTGTGCATCGTGCCCCTTTGGTCGACTGAGCGCCCGCACGCTCATTCCGTGGGTTGACTTA
131 CGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
** * *
16917680 GGCATACATAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGA
196 GGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * * * * * * **
16917745 CTGAGGGTTGCGGTAGCACAAGCTGGGCTCGGGCATGTGCAGGTGTCGTATTTTTCTTTGTTAGG
261 CCGAGGGTTGCGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * * * *
16917810 GCACCATCACCAGATCATCGCCGGAGAACCTGATCGACAGCATTGGGGTTCCGACAATCGGGGGG
326 GCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* *
16917875 GTAAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCT
391 GT-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
16917940 ATCCCTCACCAAACCTC-AGAACTCACACCCCCTTAAAGAGCATTTG
455 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTG
16917986 GGAATGAACT
Statistics
Matches: 3478, Mismatches: 447, Indels: 294
0.82 0.11 0.07
Matches are distributed among these distances:
870 32 0.01
871 116 0.03
872 106 0.03
873 311 0.09
874 231 0.07
875 12 0.00
876 59 0.02
877 1 0.00
878 3 0.00
879 3 0.00
880 2 0.00
881 178 0.05
882 4 0.00
885 1 0.00
888 3 0.00
889 4 0.00
890 4 0.00
891 6 0.00
892 1 0.00
893 2 0.00
894 2 0.00
895 1 0.00
896 124 0.04
897 849 0.24
898 28 0.01
899 20 0.01
900 120 0.03
901 120 0.03
902 190 0.05
903 35 0.01
904 76 0.02
905 1 0.00
906 2 0.00
907 5 0.00
908 194 0.06
909 8 0.00
910 225 0.06
911 91 0.03
912 1 0.00
913 1 0.00
917 5 0.00
919 1 0.00
920 22 0.01
921 28 0.01
922 6 0.00
923 4 0.00
924 237 0.07
925 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (886 bp):
GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
AGACCACCGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGTAGAGGGGGACCCGACCGATCCC
CGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
GGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
CCGAGGGTTGCGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
GCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
GTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTG
CCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACAC
TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGACAATAGTCCAAGTTTGGGACCAAAACTCCTTC
TAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAG
TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
GCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCC
Found at i:16918732 original size:26 final size:26
Alignment explanation
Indices: 16918694--16918746 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16918684 CAGGTCTGAT
* *
16918694 CTTATACTGGGAATGAACTCCGCATG
1 CTTACACTCGGAATGAACTCCGCATG
*
16918720 CTTACACTCGGAATGAACTCCGTATG
1 CTTACACTCGGAATGAACTCCGCATG
16918746 C
1 C
16918747 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTCGGAATGAACTCCGCATG
Found at i:16919609 original size:26 final size:26
Alignment explanation
Indices: 16919573--16919625 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16919563 CTAGTCCGAT
* *
16919573 CTTAGATTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
16919599 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16919625 C
1 C
16919626 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16920328 original size:882 final size:880
Alignment explanation
Indices: 16917984--16920926 Score: 3773
Period size: 898 Copynumber: 3.3 Consensus size: 880
16917974 AAAGAGCATT
* * * * *
16917984 TGGGAATGAACTCCGTATGCCTAAGCCAGCTGACAAAACAAGCGGGCTGGCGGACAGGCGGGCAC
1 TGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAA-TAGCGTGCAGGCGGACAGGCGGGCAC
* * *
16918049 TACACTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGCTGGGTTTAGGCA
65 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
** *
16918114 CATCTTCATATTTCTGCATGCCAACACCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTA
130 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
16918179 AGCCTTCATGTGAAGTTTCATGGCATGACAACTCGTTTTCTATTTTTCACGATTTTTGAAATTTT
195 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * ** * *
16918244 TTGCTGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGGCCCAAACTTTTTAGGCATGA
260 TTACTGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAA-TTGGTAGACGTGA
* *
16918309 TCCTTGTATTTTTGTTGCCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
324 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
16918374 TGACCATTTTAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
389 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
16918439 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA-AGGTTTGATGAGGGATA-GGGGCCAATAT
454 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-AGAGGTTTGATGAGGGATAGGGGGCCAATAT
* *
16918502 AAGGGCCAACTACCAGCACCCATCGCACATCATGTGCGCACACCGCCCGACCCCTTCGATCGTCG
518 AAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACA----CC--CCCC--CGATCGTCG
*
16918567 GAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCCGACGAAGAAAA
575 GAACCCCAATGCCGTCGGTCAGG---T-------T-CTCCAGCGATGGTGCCCCGACGAAGAAAA
* * *
16918632 ATGCGACACCAGCACATGCCCGAGCCCAACATGTGCTG-T-CGTAACCCTTGGTC-AGGTCTGAT
629 AT-CGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGC-T-ACCCTCGGTCTA-GTCCGAT
* * * *
16918694 CTTATACTGGGAATGAACTCCGCATGCTTACACTCGGAATGAACTCCGTATGCCTAAGTCAACCC
690 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* ** * * * * *
16918759 ACGAAACCAGTATGCGGGCATTCAGAGGGCGAGAGGGGTGGGATACACAAGTCGGGGATC-GTCC
755 ACGAAACAAGCGTGCGGGCGTTCAGACGGCCAGAGGGGCGGGATGCACAAG-CGGGGATCGGT-C
* * * * *
16918823 GGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGAT
818 GGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGAC
*
16918886 TGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAAT-GAGT--AGGCAGG-CAGGCGGGCAC
1 TGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATAGCGTGCAGGC-GGACAGGCGGGCAC
* * *
16918947 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGAATCTATAGGGTGGTAGGTGGGTTTAGACA
65 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
16919012 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTA
130 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
** * * *
16919077 AGCCTTCACATGAAGTTTCAAGACAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTT
195 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * * * *
16919142 TTACGGTTCGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGACCCCAAGCTTGGTAGATGTGA
260 TTACTGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAA-ATTGGTAGACGTGA
*
16919207 TCCTTGTATATTTT-TTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
324 TCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
16919271 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
388 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
16919336 AATCTCAAATGCTCCTTCAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATAT
453 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATAT
* *
16919401 AAGGGCCAAGTA-TGAGCACCCATCGCACATCATGAGCGTACA-CCCCCCGATCGTCGGAACCCC
518 AAGGGCCAAGTACT-AGCACCCATCGCACATCATGTGCGCACACCCCCCCGATCGTCGGAACCCC
16919464 AATGCCGTCGGTCAGGTTCTCCAGCGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATG
582 AATGCCGTCGGTCAGGTTCTCCAGCGATGGTGCCCCGACGAAGAAAAAT-CGACACCAGCACATG
* * * * *
16919529 CCCAAACCCAGCATGTGCTGCTGCTACCCTCGGTCTAGTCCGATCTTAGATTGGGAATAAACTCT
646 CCCGAGCCCAGCATGTGCTGCTGCTACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCC
* *
16919594 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
711 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGT
* *
16919659 TCAGTCGGCCAGAGGGGCGGGATGCACAAGACGAGGATCGGTCGGGTCCCCCTCTGCGTGCTACC
776 TCAGACGGCCAGAGGGGCGGGATGCACAAG-CGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACC
* * * * * *
16919724 AATCCTACCACCACAACTCTCAGTTTGGTCTGATCTTAGAC
840 GATCCTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGAC
* * * * * *
16919765 CGGGAATGAACTTCGTATGCCTATGCCAA-TCGATGAAACTAGCGTGCGGGCGGACGGGCGGGCA
1 TGGGAATGAACTCCGTATGCCTAAGCCAACT-GACGAAA-TAGCGTGCAGGCGGACAGGCGGGCA
* ** * *
16919829 CTACGTCGGCCAGAGAGATTGGATGCGCAAGCTGTGGATCGATAGGGTGGTATGTGGGTTTAGGC
64 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * * *
16919894 ACATCTTCATATTTCTACAAGCCAATGCCATTTTTATGGCTTGTAAATTCATCCAGTGGTCCCTT
129 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* *
16919959 AAGCCTTCATGTGAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCACGATTTTTGAAACTT
194 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* *
16920024 TTTACTGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAATTGGTAGACGTGA
259 TTTACTGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAATTGGTAGACGTGA
* *
16920089 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGATGTGTGCAAGATTTTG
324 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
*
16920154 TGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
389 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
16920219 ATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATA
454 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * * *
16920284 AGGGCCAAGTACTAGTACCCATCACAGATCATGTGTGCACACCCCCTAGCCCCCCCGATCGTTGG
519 AGGGCCAAGTACTAGCACCCATCGCACATCA--TGTGCGCA----C-A-CCCCCCCGATCGTCGG
*
16920349 -ACCCCAATGCCGTCGGTCCAGAGTTCTCTGACAATGCTTGCTCCGTACGATGGTGCCCTGACGA
576 AACCCCAATGCCGTCGGT-CAG-GTTCTC---C-A----------G--CGATGGTGCCCCGACGA
* * * * * * *
16920413 AGAAAAATCGGGGCCCCAAACACATGCCCGAGCCCAGCATGTGCTGCCGGTACCC-CCGTCTTGA
623 AGAAAAATC--GACACC-AGCACATGCCCGAGCCCAGCATGTGCTGCTGCTACCCTCGGTCTAG-
* *
16920477 TCCGATCTTAGACTGGAAATGAACTCCCGTATGCTTTAGACTGGGAAAGAACTCCGTATGCCTAA
684 TCCGATCTTAGACTGGGAATGAACT-CCGTATGC-TTAGACTGGGAATGAACTCCGTATGCCTAA
*
16920542 GTCAACCCACGAAACAAGCGTTG-GGGCGTTCA-ACCGGCCAGAGGGGCGGGATGCGCAAGCTGG
747 GTCAACCCACGAAACAAGCG-TGCGGGCGTTCAGA-CGGCCAGAGGGGCGGGATGCACAAGC-GG
* * ** ** * * *
16920605 GGATCGATCGAGTCCCTTTCTATGTGCTATCGATCCTGCTACCACAACCCTCGGTCCGGTCTAAT
809 GGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCACAACCCTCGGTCTGGTCTGAT
16920670 CTTAGAC
874 CTTAGAC
* * * * * * *
16920677 TGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAACGAGCAGACGGGCGGGCGGGCAC
1 TGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAAT-AGCGTGCAGGCGGACAGGCGGGCAC
* * * * *
16920742 TACACCGACCAGACAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
65 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
16920807 CATCTTCATATTTCTGCATGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
130 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
16920871 AGCCTTTATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTT
195 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
16920927 CAGCTAAAAA
Statistics
Matches: 1788, Mismatches: 197, Indels: 103
0.86 0.09 0.05
Matches are distributed among these distances:
878 1 0.00
879 269 0.15
880 7 0.00
881 8 0.00
882 222 0.12
883 235 0.13
884 5 0.00
887 1 0.00
888 1 0.00
889 1 0.00
890 48 0.03
891 17 0.01
892 10 0.01
894 1 0.00
895 1 0.00
896 1 0.00
897 1 0.00
898 410 0.23
899 54 0.03
900 2 0.00
902 36 0.02
906 1 0.00
907 1 0.00
908 24 0.01
909 10 0.01
910 54 0.03
911 93 0.05
912 272 0.15
913 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (880 bp):
TGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATAGCGTGCAGGCGGACAGGCGGGCACT
ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
TACTGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAATTGGTAGACGTGATC
CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
GGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCCGATCGTCGGAACCCCAATG
CCGTCGGTCAGGTTCTCCAGCGATGGTGCCCCGACGAAGAAAAATCGACACCAGCACATGCCCGA
GCCCAGCATGTGCTGCTGCTACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGTTCAGA
CGGCCAGAGGGGCGGGATGCACAAGCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCT
GCTACCACAACCCTCGGTCTGGTCTGATCTTAGAC
Found at i:16920528 original size:28 final size:27
Alignment explanation
Indices: 16920484--16920537 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 27
16920474 TGATCCGATC
16920484 TTAGACTGGAAATGAACTCCCGTATGCT
1 TTAGACTGGAAATGAACT-CCGTATGCT
16920512 TTAGACTGGGAAA-GAACTCCGTATGC
1 TTAGACT-GGAAATGAACTCCGTATGC
16920538 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
27 8 0.32
28 12 0.48
29 5 0.20
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (27 bp):
TTAGACTGGAAATGAACTCCGTATGCT
Found at i:16921321 original size:25 final size:26
Alignment explanation
Indices: 16921281--16921330 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
16921271 GGTCCGATCC
*
16921281 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGAAATGAACTCCGTATGCT
16921307 TAGACT-GAAATGAACTCCGTATGC
1 TAGACTGGAAATGAACTCCGTATGC
16921331 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
TAGACTGGAAATGAACTCCGTATGCT
Found at i:16922379 original size:716 final size:717
Alignment explanation
Indices: 16920947--16922751 Score: 2512
Period size: 716 Copynumber: 2.5 Consensus size: 717
16920937 GTCCTAGTGA
* * * *
16920947 ACAAGACTTTGTGACCATTTGAAAAAAGTGTCCACATTTC-GATACTTTAATGGCTACTGGTAGC
1 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * * * *
16921011 AAACCTGAAAAATCACAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGTTAGG
66 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG
* * *
16921076 GGGCCAATATAAGGGCAAAGTACCAGCACCCATCACACATCATGTGTGCACA-CCTCGCCGGGCC
131 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCTC-CCGGCCC
** * * * *
16921140 CCCGATCACCAGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATAGTGCCC
195 CCCGATTGCC-GGAACCCCAATGCCGCCGGTCAGGTTCTCTGGTGATGCTCCGACGATGGTG-CC
* * *
16921205 CCGCGAAGAAAAATATGGCAACAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACCCTC-GTT
258 CCGCGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTT
* *
16921269 CCGGTCCGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACTGAAATGAACTCCGTATGCCTA
323 -CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC----ACT-AAATCAAC-CCGTA---CT-
* * * **
16921334 AGTCAACCCACGAAATGAGCATGCGGGCGCTCAACCGGCCAGAGAGATGGGATGCGCAAGCCGTG
377 AGT-AA--CACGAAATGAGCAGGCGGGCGCACAACCGGCCAGAGAGACGGGATGCGCAAAACGTG
* * *
16921399 GATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCGTGCCAATGCCATTTTTA
439 GATAGATAAGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCAGCATGCCAATGCCATTTTTA
16921464 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCG
504 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCG
*** *
16921529 TTTTCTATTTTTCATGATTTCTGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTTGGAAG
569 TTTTCTATTTTTCATGATTTCTGAAACTTTTTACAGTTCAAAATTTTTTAAAATTTTTTCGGAAG
** *
16921594 TTGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTACTTTTTTTGGCATGCACAAAAAACTTC
634 GAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTACTTTTTTTGGCATGCACAAAAAACATC
* *
16921659 AGCTAAAAACTCGAAGTCT
699 AGCTAAAAACTCAAACTCT
16921678 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
1 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* **
16921743 AAACCTGTAAAATCTCAAATCCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAA
66 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG
* *
16921808 GGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGCACACCCCTCCCGGCCC
131 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA-CCCTCCCGGCCC
* * *
16921873 ACCCGATTGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATACTCCAACGATGGTGCCC
195 -CCCGATTGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGTGATGCTCCGACGATGGTGCCC
* *
16921938 CGACAAAGAAAAATATGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTT
259 CG-CGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTT
* * *
16922003 CGGTCTGATCTTATATTGGGAATGAACTCCGTATGC-CT-AATCCAA-CCG-A-T-GT-A-ACG-
323 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCACTAAAT-CAACCCGTACTAGTAACACGA
* * * * *
16922059 AGTGGGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAAACGTGGATCGATAA
387 AATGAGCAGGCGGGC--GCACAAC--CGGCCAGAGAGACGGGATGCGCAAAACGTGGATAGATAA
*
16922124 GGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTA-CATGCTAATGCCATTTTTATGGCTTGT
448 GGTGGTAGGTGGGTTTAGGAACATCTTCATATTTC-AGCATGCCAATGCCATTTTTATGGCTTGT
*
16922188 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
512 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTAT
* *
16922253 TTTTCATGATTTTTGAAACTTTTTACGGTTCAAAATTTTTTAAAATTTTTTCGGAAGGAGTTTTT
577 TTTTCATGATTTCTGAAACTTTTTACAGTTCAAAATTTTTTAAAATTTTTTCGGAAGGAGTTTTT
16922318 GGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAA-ATCAGCTAA
642 -GCCCCAAACTTGGTAGACGTGATCCTTGTACTTTTT-TTGGCATGCACAAAAAACATCAGCTAA
*
16922381 AAACTCAAACTGT
705 AAACTCAAACTCT
* *
16922394 ACAAGATTTTGTGACCATTTCAAACAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
1 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
16922459 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT-TTCAAGGTTTGATGAGGGATAG
66 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT-GAGGTTTGATGAGGGATAG
* *
16922523 GGGGCCTATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCC-CCCAGCCC
130 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCTCCCGGCCC
* **
16922587 GCCGATTGTAGGAACCCCAATGCCGCCGGTCAGGTTCTCCT-GTGATGCTCCGACGATGGTGCCC
195 CCCGATTGCCGGAACCCCAATGCCGCCGGTCAGGTTCT-CTGGTGATGCTCCGACGATGGTGCCC
** * * * *
16922651 CGGCGAAGAAAAATGCGGCACCAGCGCATGCCCAAGCCCAACATGTGCTGCCACAACCCTCGGTT
259 C-GCGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTT
16922716 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
323 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
16922752 TTAGACTAGG
Statistics
Matches: 967, Mismatches: 90, Indels: 52
0.87 0.08 0.05
Matches are distributed among these distances:
712 11 0.01
713 146 0.15
714 15 0.02
715 5 0.01
716 408 0.42
717 48 0.05
718 2 0.00
720 1 0.00
724 1 0.00
725 3 0.00
726 3 0.00
727 2 0.00
728 2 0.00
731 38 0.04
732 132 0.14
733 135 0.14
734 15 0.02
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (717 bp):
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCTCCCGGCCCC
CCGATTGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGTGATGCTCCGACGATGGTGCCCCG
CGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGG
TCCGATCTTAGACTGGGAATGAACTCCGTATGCACTAAATCAACCCGTACTAGTAACACGAAATG
AGCAGGCGGGCGCACAACCGGCCAGAGAGACGGGATGCGCAAAACGTGGATAGATAAGGTGGTAG
GTGGGTTTAGGAACATCTTCATATTTCAGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCATGA
TTTCTGAAACTTTTTACAGTTCAAAATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAAC
TTGGTAGACGTGATCCTTGTACTTTTTTTGGCATGCACAAAAAACATCAGCTAAAAACTCAAACT
CT
Found at i:16922754 original size:26 final size:26
Alignment explanation
Indices: 16922725--16922777 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16922715 TCGGTCCGAT
*
16922725 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
16922751 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16922777 C
1 C
16922778 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16925189 original size:26 final size:26
Alignment explanation
Indices: 16925160--16925212 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16925150 CCGATCCGAT
16925160 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16925186 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16925212 C
1 C
16925213 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16927972 original size:26 final size:26
Alignment explanation
Indices: 16927934--16927983 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16927924 AGCCCGATCT
16927934 TAGACTGGGAATGAACTCCGTATGTG
1 TAGACTGGGAATGAACTCCGTATGTG
*
16927960 TAGACTGGTAATGAACTCCGTATG
1 TAGACTGGGAATGAACTCCGTATG
16927984 CCTAATTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGTG
Found at i:16928840 original size:26 final size:26
Alignment explanation
Indices: 16928811--16928861 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16928801 GGCCCAATCT
* *
16928811 TAGACTGGGAATGAACTCTGTATGCG
1 TAGACTGGGAATGAAATCCGTATGCG
*
16928837 TAGACTGGTAATGAAATCCGTATGC
1 TAGACTGGGAATGAAATCCGTATGC
16928862 CTAAGTCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAAATCCGTATGCG
Found at i:16929723 original size:26 final size:26
Alignment explanation
Indices: 16929694--16929746 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16929684 CCGGTCTGAT
* *
16929694 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
16929720 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
16929746 C
1 C
16929747 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:16930094 original size:885 final size:885
Alignment explanation
Indices: 16927606--16933477 Score: 6419
Period size: 885 Copynumber: 6.6 Consensus size: 885
16927596 CATTTGAAAA
* * *
16927606 AAGTGTACAAGATTTTGTGACCATTT-GAAAAAAGTGTCGCCATTTCAGACACTTTAATGGCTAC
1 AAGTGTACAAGATTTTGTCACCATTTCAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
16927670 TGGTAGCAAAACTTTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
66 TGGCAGCAAACCTTTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
*
16927735 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATATGTGCGCACA-CCCCCC
131 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATATGTGTGCACACCCCCCC
* * *
16927799 AACCCCCCCGATCGCCAGAACCCCAATGCCG-CAGGTCAGGTTCTCTGACGATGTTGCCCTGGCG
196 GA-CCCCCCGATCGCCGGAACCCCAATGCCGCCA-GTCAGGTTCTCCGACGATGTTGCCCTGGCG
* ** ** * *
16927863 AAGAAAAATGCGATACCAACACATGCCCGAGCCCAGCATGTGCTGCCATAACCCTCGGTCTAGCC
259 AAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGGCC
*
16927928 CGATCTTAGACTGGGAATGAACTCCGTATG-TGTAGACTGGTAATGAACTCCGTATGCCTAATTC
324 CGATCTTAGACTGGGAATGAACTCCGTATGCT-TAGACTGGTAATGAACTCCGTATGCCTAAGTC
* * * *
16927992 AACCCACGAAATGAGCGTGCAGGTGCTCAGCCGGCCAGAGGGGCAGGACGTGCAAGCCGAGGATC
388 AACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGACGCGCAAGCCGGGGATC
* * * ** *
16928057 AGCCTGGTCCCCCTCTGCGTACTGTCGATCATGCTGCCGCAACCCTCACTCCGGTCCGATCTTAG
453 GGCCTGGTCCCCCTCTGCGTGCTGTCGATCTTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAG
* * *
16928122 ACTGGGAATGAACTCCGTATGTCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACACA
518 GCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGC-
* * *
16928187 C-CCCAGAGAGACGGGATGCGCAAGCCGTGCAGT-GATAGGGTGGTAGGTGGGTTTAGGCACGTC
582 CGGCCAGAGAGACGGGATGCGCAAGCCGTGCA-TCGATAGGGTGGTAGGTGGCTTTAGGCACATC
* *
16928250 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATGGTCCTTTAAGCC
646 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCC
* * * * *
16928315 TTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTTATTTTTCATGATTTTCAAAACTTTTTA
711 TTCACATGAAATTTCATGGCAAGACGACTCAGTTTTCTATTTTTCACGATTTTCAAAACTTTTT-
* * *
16928380 G-GGTTCGGGGTTTTTTAAAATTTTTTC-GTACGGAGTTTTGGCCCCGAACTTGGTAGACATGAT
775 GCGGTTCGGGGTTTTTTCAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACATGAT
* * *
16928443 CCTTGTGTTTTTATTGGCACGCACAAAAAAATTCAGCTAAAAACTCG
839 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
16928490 AAGTGTACAAGATTTTGTCACCATTTCAAAAAAAGTCTCCCCATTCCAGACACTTTAATGGCTAC
1 AAGTGTACAAGATTTTGTCACCATTTCAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
16928555 TGGCAGCAAACCTTTAAAATCTCAAATGGTCTTTAATGGGGTTTGAGTTCTTGAGGTTTGATGAG
66 TGGCAGCAAACCTTTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
* *
16928620 GGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATA--TGTGCACA----CAC
131 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATATGTGTGCACACCCCCCC
* * * * *
16928679 --CCCCCCGATTGCCGGAACCCCAATGCCGTCAATAAGGTTTTCCGACGATGTTGCCCTGGCGAA
196 GACCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGTTGCCCTGGCGAA
* ** * *
16928742 GAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTGGTAACCCTCAGTCTGGCCCA
261 GAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGGCCCG
* * * *
16928807 ATCTTAGACTGGGAATGAACTCTGTATGCGTAGACTGGTAATGAAATCCGTATGCCTAAGTCAAA
326 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGTAATGAACTCCGTATGCCTAAGTCAAC
* * *
16928872 CCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGACGCGCAAGTCAGGGATCAGC
391 CCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGACGCGCAAGCCGGGGATCGGC
* * * * *
16928937 CTGGTCCCCCTCTGCGTGCTATCGATCTTGCTGCCACAACCCTCGTTCCAGTCCGATCTT-GGAC
456 CTGGTCCCCCTCTGCGTGCTGTCGATCTTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGG-C
* * * * * *
16929001 TGGGAATGAACTCCATGTGCCTAAGCCAACTGACGAAATGAGCGGGCGGGCAGGCACTACGCTGG
520 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGG
* * *
16929066 CCAAAGAGACGGGATGCGCAAGCCGTGCATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
585 CCAGAGAGACGGGATGCGCAAGCCGTGCATCGATAGGGTGGTAGGTGGCTTTAGGCACATCTTCA
* *
16929131 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA-TAGATACAACGGTCCTTTAAGCCTTC
650 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTA-ATACAATGGTCCCTTAAGCCTTC
* * * **
16929195 ACGTGAAGTTTCATGGCAAGACGACTCATTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCAA
714 ACATGAAATTTCATGGCAAGACGACTCAGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGG
* *
16929260 TTCGGGGTTTTTTAAAATTTTTTC-GCAAGGAGTTTTGGTCCCAAACTTGGTAGACATGATCCTT
779 TTCGGGGTTTTTTCAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTT
* *
16929324 GTATTTTTGTTGCCATGCACAAAAAAATTCAGCGAAAAACTCG
843 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * *
16929367 GAGTGTACAAGATTTTGTCACCATTTCAAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTAT
1 AAGTGTACAAGATTTTGTCACCATTTCAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
16929432 TGGCAGCAAACCTTTAAAATCTCAAATGGTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAC
66 TGGCAGCAAACCTTTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
16929497 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATATGTGTGCACACCCCCCC
131 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATATGTGTGCACACCCCCCC
* * *
16929562 GACCCCCCGATCGTCGGAACCCCAATGTCGCCAATCAGGTTCTCCGACGATGTTGCCCTGGCGAA
196 GACCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGTTGCCCTGGCGAA
* * * *
16929627 GAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGGTCTG
261 GAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGGCCCG
* * *
16929692 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAAATGAACTCCATATGCCTAAGTCAGC
326 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGTAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * * *
16929757 CCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCAGGGGGGCAGGATGCGTAAGTCGGGGATCGGT
391 CCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGACGCGCAAGCCGGGGATCGGC
* * * * *
16929822 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCAGTTTGATCTTAGGCT
456 CTGGTCCCCCTCTGCGTGCTGTCGATCTTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGGCT
* * * * *
16929887 GGGAATGAACTTCGTATACCTAAGCCAACGGATGAAACGAGCGGGCGGACGGGCACTACGCCGGC
521 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGC
* * * *
16929952 CAAAGAGACGGGATGCGCAAGCCATGCATCGATAGGGTGGTAAGTGGCTTTGGGCACATCTTCAT
586 CAGAGAGACGGGATGCGCAAGCCGTGCATCGATAGGGTGGTAGGTGGCTTTAGGCACATCTTCAT
**
16930017 ATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCAC
651 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCAC
** **
16930082 ATGAAATTTCATGGCAAGGTGACTC-GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTT
716 ATGAAATTTCATGGCAAGACGACTCAGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTT
* * *
16930146 CGGGATTTTTTCAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
781 CGGGGTTTTTTCAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA
* *
16930211 TTTTTGTTGGAATGCACAAAAAAATTCAGCTAAAAACTCA
846 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * *
16930251 AAGTGTACAAGATTTTGTGACCATAT-GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
1 AAGTGTACAAGATTTTGTCACCATTTCAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* ** *
16930315 TAGCAGCAAACCAGTAAAATCTCAAATGCTCTTTAAGGGGGTGAGAGTTCTTGAGGTTTGATGAG
66 TGGCAGCAAACCTTTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
* ** *
16930380 GGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC
131 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACAT-ATGTGTGCACACCCCCC
* * * * * * * ** *
16930445 AG-CCCCCTGATTGCCGAAACCCCAATGACGCCGGTCAGGTTCTCC-AGCGATGGTGCCCCAGCA
195 CGACCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGA-CGATGTTGCCCTGGCG
* * * * * **
16930508 AAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGTTGCCCCAACCCTCGGTCTGGAT
259 AAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGGCC
* *
16930573 CGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
324 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGTAATGAACTCCGTATGCCTAAGTCA
* * * * * * *
16930638 ACCCACGAAACGAGCATGAGGGTGCCCAACCGGCCAGAGGGGCGGGATGCGCAAACCGGGGATCG
389 ACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGACGCGCAAGCCGGGGATCG
* * * * * * * * *
16930703 ACCAGGTCCCCCTCTACGTGCTGACGATCTTGCTGTCGTAACCCTCAGTTCGGTCTGATCTTAGA
454 GCCTGGTCCCCCTCTGCGTGCTGTCGATCTTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGG
* * * * ** * *
16930768 CTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGC--GCTC-A-GCTG
519 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCG
* * * * * * * * **** ** * * *
16930829 GCCAGAGGGGCAGGACGCTCAAGTCGGGGATCGGCCTGGTCCCCCTCTGCGT-GCTGT-CG-ATC
584 GCCAGAGAGACGGGATGCGCAAGCCGTGCATCGATAGGGT---GGT-AG-GTGGCTTTAGGCA-C
** *** * * ** * ** * * *
16930891 ATGCTGTCGCAACCCT-C-GGTTCGGT-CCGA--TCT-TGGAC-TGGGAATGAACTCCGTAT-G-
643 AT-CT-TCATATTTCTGCATG-CCAATGCC-ATTTTTATGG-CTTGTAAATTAA-TAC-AATGGT
** *** * * * ** * *****
16930947 -CC-TAAGCCAAC-CGATGAAACGAGCA-GGC-GGGCGGGCACT-ACGCTGGCCA-GAGAGACGG
701 CCCTTAAGCCTTCAC-ATGAAA-TTTCATGGCAAGAC--G-ACTCA-GTTTTCTATTTTTCAC--
*** ** * * * * *
16931005 GATGCGCAAGCCGTGCATTGATAG-GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
758 GATTTTCAAAAC-T---TT--TTGCGGT--T-CG-GGGTTT-------T-TTCAAATTTTTTCA-
* * *** * * * * * *
16931069 GCCAATGCCATTTTTATGGCTTGTAAA-TTGATACA-ATGGTCCTT-TA--------AGCCTTCA
804 G--AA-G-GA-GTTT-TGGC-CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
*** ** *
16931123 CGTGAAGTTTCATGGC-AAGACGACTC-
862 CAAAAAAATTCA--GCTAA-A-AACTCG
***** * * * **** * * *
16931149 --GT-TTTTTTATTTT-TCACGATTTTCAAAACTTTTTACG-GTTCGGGGTTTTTTA-AAATTTT
1 AAGTGTACAAGATTTTGTCACCA-TTTCAAAA-----AAAGTG-TC--CCCATTTCAGACA---C
* ** ** * * * ** ****
16931208 TTCGTAA-GGAGTTTTGGCCCCAAA-CTTGGT-AGA---C--ATGATCCTTGTGTTTTTGTGAGT
54 TT--TAATGG-CTACTGGCAGCAAACCTT--TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
16931265 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACCTA
114 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATA
* * * *
16931330 --TGTGCACACACCCCCCGACCCCCCCAATCACCGGAACCCCAATACCGTCAGTCAGGTTCTCCG
179 TGTGTGCACAC-CCCCCCGA-CCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCG
* *
16931393 ACGATATTGCCCTGGCGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCGG
242 ACGATGTTGCCCTGGCGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCG
* *
16931458 CAACCCTC-GATCTGGCCCAATCTTAGACTGGGAATGAACTCCGTATGCGTAGACTGGTAATGAA
307 CAACCCTCAG-TCTGGCCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGTAATGAA
* * * *
16931522 CTCCGTATGCCTAAGTCAATCCATGAAATGAGCGTGCGGGTGCTCAGTCGGCCAGAAGGGCGGGA
371 CTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGA
* * * *
16931587 CGCGCAAGCCGGGGATCGGCCTGGTCCCCCTCTACATGCTGTTGATCTTGCTGCCGCAACCCTCA
436 CGCGCAAGCCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGTCGATCTTGCTGCCGCAACCCTCG
* **
16931652 GTCTGGTCTGATCTT-GGACTGGGAATGAACTCCGTATGCCTAAGCTGACCGACGAAACGAGCGG
501 GTCCGGTCTGATCTTAGG-CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* * * *
16931716 GCGGGCGGCCACTACACTGGCCAGAGAGACGGGATGCGCAAGCCGTGCATTGATAGGGTGGTAGG
565 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGCATCGATAGGGTGGTAGG
* *
16931781 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTGATAC
630 TGGCTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTAATAC
* * * *
16931846 AATGGTCCTTTAAGCCTTCACATGAAGTTTCATGGCACGACGACTC-GTTTTTCTATTTTTTACG
695 AATGGTCCCTTAAGCCTTCACATGAAATTTCATGGCAAGACGACTCAG-TTTTCTATTTTTCACG
*
16931910 ATTTTCAAAACTTTTTGCGGTTCGGGGATTTTTT-AAATTTTTTC-GTAAGGAGTTTTGGTCCCA
759 ATTTTCAAAACTTTTTGCGGTTCGGGG-TTTTTTCAAATTTTTTCAG-AAGGAGTTTTGGCCCCA
* * *
16931973 AACCTGGTAGACATGATCCTTGTGTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAGCTCG
822 AACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
*
16932037 AAGTGTACAAGATTTTGTCACCATTTCAAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTAC
1 AAGTGTACAAGATTTTGTCACCATTTCAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
16932102 TGGCAGCAAACCCTTAAAATCTCAAATGGTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
66 TGGCAGCAAACCTTTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
*
16932167 GGAAAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATA--TGTGCACACACCCCC
131 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATATGTGTGCACAC-CCCCC
* * * *
16932230 CGACCCCCCCGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCCAACGATGTTGCCCTGGCG
195 CGA-CCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGTTGCCCTGGCG
* * *
16932295 AAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCGGAAACCCTCAGTCTGGCC
259 AAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGGCC
* * * *
16932360 CAATCTTAGACTGGGAATGAGCTCCATATGCGTAGACTGGTAATGAACTCCGTATGCCTAAGTCA
324 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGTAATGAACTCCGTATGCCTAAGTCA
* * *
16932425 ACCCACGAAATGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGACGCACAAGCCGGGGATCA
389 ACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGACGCGCAAGCCGGGGATCG
* * *
16932490 GCCTGGTCCCCCTTTGCGTGCTGTCGATCTTGCTGCCGCAACCCTCGGTTCGATCTGATCTTAGG
454 GCCTGGTCCCCCTCTGCGTGCTGTCGATCTTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGG
* * * *
16932555 CTGGGAATGAACTCCGTATACCTAAGCCAACGGATGAAATGAGCGGGCGGACGGGCGGACGGGCA
519 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GG-C--G-GG-CGGGCA
* * * * * *
16932620 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGAGAGGGTGGTAAGTGGCTTTGGGC
576 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGCATCGATAGGGTGGTAGGTGGCTTTAGGC
** *
16932685 ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
641 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTAATACAATGGTCCCTT
* * ** * **
16932750 AAGCCTTCACGTGAAATTTCAAGGCAAGGTGACTC-GTTTTCTATTTTTCATGATTTTTGAAACT
706 AAGCCTTCACATGAAATTTCATGGCAAGACGACTCAGTTTTCTATTTTTCACGATTTTCAAAACT
* * *
16932814 TTTTGCGTTTCGGGATTTTTTCAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
771 TTTTGCGGTTCGGGGTTTTTTCAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACAT
*
16932879 GATCCTTGTATTTTTGTTGGAATGCACAAAAAAATTCAGCTAAAAACTCG
836 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * *
16932929 AAGTGTACAAGATTTTGTGACCATTT-GAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTAC
1 AAGTGTACAAGATTTTGTCACCATTTCAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
16932993 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGAGAGTTCTTGAGGTTTGATGAG
66 TGGCAGCAAACCTTTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
** *
16933058 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC
131 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACAT-ATGTGTGCACACCCCCC
* * * * * * * *
16933123 AG-CCCCCTGATCGTCGGAACCCCAATGACGCCGGTCAGGTTCTCC-AGCGATGGTCCCCCGGCG
195 CGACCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGA-CGATGTTGCCCTGGCG
* ** * **
16933186 AAGAAAAATACGGCACCAGCACATGCTTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTT
259 AAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGGCC
* *
16933251 CGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
324 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGTAATGAACTCCGTATGCCTAAGTCA
* * * * * *
16933316 ACCCACGAAACGAGCATGCGGGTGCTCAACAGGCCAGAGGGGCGGGATGCGCAAACCGGGGATCG
389 ACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGACGCGCAAGCCGGGGATCG
* * * * ** * * *
16933381 ACCAGGTCCCCCTCTACGTGCTGACGATCTTGCTGATGTAACCCTCGGTTCGGTCTGATCTTAGA
454 GCCTGGTCCCCCTCTGCGTGCTGTCGATCTTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGG
* *
16933446 CTAGGAATGAACTCCGTATGCCTAAGTCAACC
519 CTGGGAATGAACTCCGTATGCCTAAGCCAACC
16933478 AATGAAACAA
Statistics
Matches: 4165, Mismatches: 657, Indels: 325
0.81 0.13 0.06
Matches are distributed among these distances:
876 4 0.00
877 789 0.19
878 18 0.00
879 46 0.01
880 40 0.01
881 29 0.01
882 20 0.00
883 471 0.11
884 205 0.05
885 1046 0.25
886 13 0.00
887 15 0.00
888 9 0.00
889 5 0.00
890 16 0.00
891 473 0.11
892 155 0.04
893 158 0.04
894 12 0.00
895 11 0.00
896 20 0.00
897 3 0.00
898 6 0.00
899 26 0.01
900 10 0.00
901 14 0.00
902 400 0.10
903 17 0.00
904 21 0.01
905 29 0.01
906 49 0.01
907 31 0.01
908 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (885 bp):
AAGTGTACAAGATTTTGTCACCATTTCAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
TGGCAGCAAACCTTTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATATGTGTGCACACCCCCCC
GACCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGTTGCCCTGGCGAA
GAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGGCCCG
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGTAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGACGCGCAAGCCGGGGATCGGC
CTGGTCCCCCTCTGCGTGCTGTCGATCTTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGGCT
GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGC
CAGAGAGACGGGATGCGCAAGCCGTGCATCGATAGGGTGGTAGGTGGCTTTAGGCACATCTTCAT
ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCAC
ATGAAATTTCATGGCAAGACGACTCAGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTT
CGGGGTTTTTTCAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA
TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
Found at i:16930613 original size:26 final size:26
Alignment explanation
Indices: 16930577--16930629 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16930567 CTGGATCGAT
16930577 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16930603 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16930629 C
1 C
16930630 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16930896 original size:159 final size:159
Alignment explanation
Indices: 16930603--16930979 Score: 529
Period size: 159 Copynumber: 2.4 Consensus size: 159
16930593 ACTCCATATG
* *
16930603 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGAGGGTGCCCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCCCAAC
* * *
16930668 CGGCCAGAGGGGCGGGATGCGCAAACCGGGGATCGACCAGGTCCCCCTCTACGTGCTGACGATCT
66 CGGCCAGAGGGGCAGGACGCGCAAACCGGGGATCGACCAGGTCCCCCTCTACGTGCTGACGATCA
* *
16930733 TGCTGTCGTAACCCTCAGTTCGGTCTGAT
131 TGCTGTCGCAACCCTCAGTTCGGTCCGAT
* * * *
16930762 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCCCAAC
* * ** * * * *
16930827 TGGCCAGAGGGGCAGGACGCTCAAGTCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGTCGATCA
66 CGGCCAGAGGGGCAGGACGCGCAAACCGGGGATCGACCAGGTCCCCCTCTACGTGCTGACGATCA
*
16930892 TGCTGTCGCAACCCTCGGTTCGGTCCGAT
131 TGCTGTCGCAACCCTCAGTTCGGTCCGAT
* * * * *
16930921 CTTGGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCGGGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCG
16930980 GGCACTACGC
Statistics
Matches: 191, Mismatches: 27, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
159 191 1.00
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCCCAAC
CGGCCAGAGGGGCAGGACGCGCAAACCGGGGATCGACCAGGTCCCCCTCTACGTGCTGACGATCA
TGCTGTCGCAACCCTCAGTTCGGTCCGAT
Found at i:16931519 original size:26 final size:26
Alignment explanation
Indices: 16931481--16931531 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16931471 GGCCCAATCT
16931481 TAGACTGGGAATGAACTCCGTATGCG
1 TAGACTGGGAATGAACTCCGTATGCG
*
16931507 TAGACTGGTAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
16931532 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCG
Found at i:16932404 original size:26 final size:26
Alignment explanation
Indices: 16932366--16932416 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16932356 GGCCCAATCT
*
16932366 TAGACTGGGAATGAGCTCCATATGCG
1 TAGACTGGGAATGAACTCCATATGCG
* *
16932392 TAGACTGGTAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
16932417 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCG
Found at i:16933291 original size:26 final size:26
Alignment explanation
Indices: 16933255--16933307 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16933245 CTGGTTCGAT
16933255 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16933281 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16933307 C
1 C
16933308 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16933581 original size:159 final size:159
Alignment explanation
Indices: 16933281--16933636 Score: 444
Period size: 159 Copynumber: 2.2 Consensus size: 159
16933271 ACTCCATATG
* * *
16933281 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCATGCGGGCGCTCAAC
* *
16933346 AGGCCAGAGGGGCGGGATGCGCAAACCGGGGATCGACCAGGTCCCCCTCTACGTGCTGACGATCT
66 AGGCCAGAGGGGCGGGATGCGCAAACCAGGGATCGACCAGGTCCCCCTCTACGTGCTGACGATCC
* * * * * *
16933411 TGCTGATGTAACCCTCGGTTCGGTCTGAT
131 TGATCACGTAACACTCGGTCCAGTCTGAT
* * ** *
16933440 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACAAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCATGCGGGCGCTCAAC
* * * * * * **
16933505 CGGCCAGAGGGGCGGGATGCGTAAGCCAGGGATCTACCGGGTCCCCCTTTGTGTGCTGTA-GATC
66 AGGCCAGAGGGGCGGGATGCGCAAACCAGGGATCGACCAGGTCCCCCTCTACGTGCTG-ACGATC
*
16933569 CTGATCCCGTAACACTCGGTCCAGTCTGAT
130 CTGATCACGTAACACTCGGTCCAGTCTGAT
* * *
16933599 GTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
16933637 GACAAAACGA
Statistics
Matches: 167, Mismatches: 29, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
159 166 0.99
160 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCATGCGGGCGCTCAAC
AGGCCAGAGGGGCGGGATGCGCAAACCAGGGATCGACCAGGTCCCCCTCTACGTGCTGACGATCC
TGATCACGTAACACTCGGTCCAGTCTGAT
Found at i:16934353 original size:26 final size:26
Alignment explanation
Indices: 16934317--16934367 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16934307 GGTTTGATCG
* *
16934317 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCCATATGCT
16934343 TAGACTAGGAATGAACTCCATATGC
1 TAGACTAGGAATGAACTCCATATGC
16934368 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCATATGCT
Found at i:16935201 original size:26 final size:26
Alignment explanation
Indices: 16935172--16935224 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16935162 TCGGTCCGAT
*
16935172 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
16935198 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16935224 C
1 C
16935225 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16936792 original size:26 final size:26
Alignment explanation
Indices: 16936763--16936815 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16936753 TCGGTCCGAT
*
16936763 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
16936789 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16936815 C
1 C
16936816 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16939243 original size:26 final size:26
Alignment explanation
Indices: 16939207--16939256 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
16939197 CCAATCCGAT
* *
16939207 CTTAGACTGGGAGTGAACTTCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
*
16939233 CTTAGAGTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
16939257 TGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:16940134 original size:26 final size:26
Alignment explanation
Indices: 16940105--16940157 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16940095 CCGATCTGAT
*
16940105 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
*
16940131 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
16940157 C
1 C
16940158 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:16940738 original size:899 final size:895
Alignment explanation
Indices: 16937891--16941031 Score: 4108
Period size: 899 Copynumber: 3.5 Consensus size: 895
16937881 GTGAAGTTTC
* ** **
16937891 GAAACTTTTTACGGTTCTGGATTTTTTAAAATTTTTTTTTTTGAA-GAGTTTTGGCCAAAAACTT
1 GAAACTTTTTACGGTTCGGGATTTTTTAAAA---TTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * * *
16937955 GGTAGACATGATCCTTGCATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGT
63 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
16938020 ACAAGATTTTCTGACCATTCGAAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
128 ACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTT-AGACACTTTAATGGCTACTGGCAG
**
16938085 CAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGTTAG
191 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAAAG
* * *
16938149 GGGGCCAATATAAGTGCCAAGTACCAGCTCCCATCGTACATCATGTGCGCACAACCCCCCCGGCC
256 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCCGGCC
** * * * * *
16938214 CCCTTGATTGCC-GAACCCTAATGCCGCCAAG-CAGGTTCTCTGGCGATGC-TCGGGCGATGGTA
320 CCCCGGATCGCCGGAACCC-AATGCCGCC-GGTCAGGTTCTCCGGCGATGCTTC-GACGATGGTG
* ** * * * *
16938276 CCCCGGTGAAGAAAAATGACGACACCAGCACATGCCCGAGCCCAGCATGTGTTGCTGCAA----C
382 CCCTGACGAAGAAAAATG-CGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
16938337 ---CC--T-CGATC-----C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATG
446 GGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
16938380 CTTAAGTCAACCCACGAAACGATCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATACGCAAGT
511 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGACGGCCAGAGGGGCGGGATGCGCAAGC
* * * ** * * * *
16938445 CGGGGATCGGCCAGGTCCCCCTCTGTGTGCTACCGATCCTGCTGCCACAACCCTTGGTTCGGTCC
576 CGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCTGCAACCCTCGATCCGGTCT
* *
16938510 AATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATC-AAATGAAC---GGGCGGGC
641 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-GA-CGAAATGAACGGGGGGCGGGC
* *
16938571 GGGCACTACCCT-GCCAGAGAGACGGGATGCGCAGGCCCTGGATCGATAGGGTGGTAGGTGGGTT
704 GGGCACTA-CCTGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTT
* *
16938635 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGT
768 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
16938700 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTACTTTTCACAATTTTC
833 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * *
16938763 AAAACTTTTTGCGGTTCGGGA-TTTTTGAACTTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
1 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
16938827 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAGAAATTTAGCTAAGAACTCGAAGGGTACA
66 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
16938892 AGATTTTGTGACCATTTGAAAAAAGTCTCCTCATTATAGACACTTTAATGGCTACTGGCAGCAAA
131 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT-TAGACACTTTAATGGCTACTGGCAGCAAA
* * *
16938957 CTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
195 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAAAGGGGG
**
16939022 CCAATATAAGGGCCAAGTACCAGCATGCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCG
260 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCG
* * *
16939086 GATCGCCGGAACCCGAAT---GCC-GTCA-G---T-CAG-G-TTCTTCGACGA---TACCCTGAC
325 GATCGCCGGAACCC-AATGCCGCCGGTCAGGTTCTCCGGCGATGCTTCGACGATGGTGCCCTGAC
* * * * * *
16939137 GAAGAAAAATGCGGCACCAGCACTTGCCCAAGCCCAGCATGTCCTGCCGTAACCCTCGGTCCAAT
389 GAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGAT
* * * *
16939202 CCGATCTTAGACTGGGAGTGAACTTCGTACGCTTAGAGTGGGAATGAACTCCGTATGCCTAAGTC
454 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
** * * * * *
16939267 AACCCATTAAACGAGCGTGCGGGCGCTCAGTCAGCCAAAGGGACGGGATGCACAAGCCGGGGATC
519 AACCCACGAAACGAGCGTGCGGGCGCTCAGACGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * *
16939332 GGCCGGGTCCCCCTTTGCGTGCTACCGATCCTATTGCTGCAACCCTC-AGTCCGATCTGATCTTC
584 GGCCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCTGCAACCCTCGA-TCCGGTCTGATCTTA
16939396 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAACGGGCGGGCGGGCGGGCACT
648 GACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGACGAAATGAACGGG-GGGCGGGCGGGCACT
* * *
16939461 GCGTCGGCCAGAGAGACGGGATGCACAAGCCATGGATCGATAGGGT-GTAGGTGGGTTTAGGCAC
711 ACCT-GGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
16939525 ATCTTCATATTGT-TGCATGCCAATGCCATTTTTATGGCTTGTAAAATCATACAATGGTCCCTTA
775 ATCTTCATATT-TCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
16939589 AGCCTTCACGTCAAGTTCCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
839 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
16939646 GAAACTTTTTTCGGTTTGGGATTTTTTAAAATCTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT
1 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
16939711 AGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAACAATTCACCTAAAAACTCGAAGTGTACA
66 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * * *
16939776 ACATTTTGAGACCATTTGAAAAAAGTGTCCCTATTTTAGACACTTTAATGGCTACTAGCAGCAAA
131 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTAGACACTTTAATGGCTACTGGCAGCAAA
* *
16939841 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGACAGGGGG
195 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAAAGGGGG
* *
16939906 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGGCTCCTC
260 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCCC
* *
16939971 -GATCGCCGTAACCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTTCGGCGATGGTGCCCTGAC
324 GGATCGCCGGAACCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTTCGACGATGGTGCCCTGAC
* * * *
16940035 GAAGAAAAATGCGACACCATCACATGCCCGAGCCCAGCATGTGTTGCCGGAACCCTCGGTCCGAT
389 GAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGAT
* * *
16940100 CTGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
454 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
16940165 AACCCACGAAACCAGCGTACGGGCGCTCAGAGGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATC
519 AACCCACGAAACGAGCGTGCGGGCGCTCAGACGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * *
16940230 GGTCGGGTCCCCCTCTACGTGCTACCGATCCTACTACTGCAACCCTCGATCCGGTCTGATCTTAG
584 GGCCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCTGCAACCCTCGATCCGGTCTGATCTTAG
* * * * *
16940295 ACTGGGAATGAACTCCCTATGCTTAAGCCAATCGAGGAAACGAGCGGGTGGGCGGGCGGGCACTA
649 ACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGACGAAATGAACGGG-GGGCGGGCGGGCACTA
** * * *
16940360 CACTGGCCAGAGAGACGGGATGCGCAAGCTGTTGATCAATAGGGTGGTAGGTGGGTTTAGGCTCA
712 C-CTGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
16940425 TCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTAAAG
776 TCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * *
16940490 CCTTCACGTGAAGTTTCATGGCAAGATGACTCCTTTTCTATTTTTTACGATTTTT
841 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
16940545 GAAACTTTTTACAGTTCAGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTTGT
1 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
*
16940610 AGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
66 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
16940675 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
131 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT-AGACACTTTAATGGCTACTGGCAGCAAA
* *
16940740 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGGGGGAAAGGGGG
195 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAAAGGGGG
* * *
16940805 CCAATATAAGGGCCAAGAACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCCT
260 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCG
* * * * *
16940870 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGAT
325 GATCGCCGGAA-CCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTTCGACGATGGTGCCCTGAC
* * * * *
16940935 GAAGAAAAATGTGGCACCAAAACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCTGGT
389 GAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGAT
*
16941000 CCAATCTTAGACTGGGAATGAACTCCGTATGC
454 CCGATCTTAGACTGGGAATGAACTCCGTATGC
16941032 CTAAGTCAAC
Statistics
Matches: 1973, Mismatches: 229, Indels: 106
0.85 0.10 0.05
Matches are distributed among these distances:
853 34 0.02
854 17 0.01
857 7 0.00
858 3 0.00
859 1 0.00
860 3 0.00
862 1 0.00
863 7 0.00
864 2 0.00
865 3 0.00
867 19 0.01
868 87 0.04
869 173 0.09
871 8 0.00
872 18 0.01
874 1 0.00
877 3 0.00
878 2 0.00
879 175 0.09
880 1 0.00
882 2 0.00
883 160 0.08
884 301 0.15
885 15 0.01
886 12 0.01
887 3 0.00
888 4 0.00
889 1 0.00
892 1 0.00
893 2 0.00
894 1 0.00
895 9 0.00
898 343 0.17
899 421 0.21
900 133 0.07
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (895 bp):
GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAAAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGG
ATCGCCGGAACCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTTCGACGATGGTGCCCTGACGA
AGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCC
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGACGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
CCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCTGCAACCCTCGATCCGGTCTGATCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACGACGAAATGAACGGGGGGCGGGCGGGCACTACCTG
GCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
Found at i:16943099 original size:26 final size:26
Alignment explanation
Indices: 16943060--16943112 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16943050 CCGGTCCGAT
* *
16943060 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
*
16943086 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
16943112 C
1 C
16943113 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:16943751 original size:903 final size:902
Alignment explanation
Indices: 16941284--16945430 Score: 6155
Period size: 903 Copynumber: 4.6 Consensus size: 902
16941274 CCGGTCCGAT
* * * * **
16941284 CTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGATCGTGCGGGTGCTCAAT
1 CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
* * * * * * * *
16941349 CGACCAGAGGGGCAGGATAG-GCAAGTTGGGGATCGGGCAGGTCCCCCTCTGTGTGCTACTGATC
66 CGGCCAGAGGGGCGGGAT-GCGCAAGTCGTGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATC
* * * * * * * * * * *
16941413 CTGCTGCCATAACCCTTGGTTTGGTCCGATCTTAGACTGGGAATGAAATCCATATGCTTGAGCCA
130 CTGTTGTCACAACCCTCGGTCTGGCCCCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
16941478 ACCGATGAAACGA-----A--CGGGCGGGCGGGCACTACGCCT-GCCAGAGAGACGGGCTGCGCA
195 ACCGACGAAACGAGGGGCAGGCGGCCGGGCGGGCACTACG-CTGGCCAGAGAGACGGGATGCGCA
* * *
16941535 GGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
16941600 ATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
324 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * *
16941665 CGACTCGTTTTCGACTTTTCACAATTTTCAAAATTTTTTGTGGTTCGAGATTTTTTAAACTTTTT
389 CGACTCGTTTTCTATTTTTCACGATTTTCAAAA-TTTTTGGGGTTCGGGATTTTTTAAAATTTTT
* *
16941730 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
453 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * * *
16941795 AAAATTCAACTAAAAACTCCAAGTGAACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTT
* *
16941860 CAGACTCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGGTA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTA
* *
16941925 GATCTCAAGGTTTGATGAGGGATTGGGGGCCAACATAAGGGCCATGTACCAGTACCCATCGCACA
648 GTTCTCAAGGTTTGATGAGGGATTGGGGGCCAACATAAGGGCCATGTACCAGCACCCATCGCACA
*
16941990 TCATGTGCGCACAGCCCCCCTCCGGCCCCCCGATCGCTGGAACCCCAATGCTGCCGGTCAGGTTC
713 TCATGTGCGCACAGCCCCCCTCCGGCCCCCCGATCACTGGAACCCCAATGCTGCCGGTCAGGTTC
*
16942055 TCCGGCGATGCTACGGATGCTGCCCCGACGAAGAAAAATGTGGTACCAGCACATGCCCGAGCCCA
778 TCCGGCGATGCTACGGATGCTGCCCCGACGAAGAAAAATGCGGTACCAGCACATGCCCGAGCCCA
* *
16942120 GCATGTGCTGCCGTAACCCTCGGTCCGGTTCGATCTTAGATTGGGAATGAAC-CTCATATG
843 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTC-CATATG
* *
16942180 CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
* *
16942245 CGGCCAGAGGGGTGGGATGCGCAAGTCGTGGATCGGTCGGGTCCCCCTCTGCGTGCTACCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGTGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCC
16942310 TGTTGTCACAACCCTCGGTCTGGCCCCATCTTAGACTGGGAATGAACTCCGTATG-CTAAGCCAA
131 TGTTGTCACAACCCTCGGTCTGGCCCCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
16942374 CCGACGAAACGAGCAGACGGGCAGGCAGCCGGGCGGGCACTATGCCGGCTAGAGAGACGGGATGC
196 CCGACGAAAC--G-AG--GGGCAGGCGGCCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGC
16942439 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
256 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
*
16942504 GCCATTTTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
321 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* *
16942569 AGACGAGTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGGGGTTCGGGATTTTTTAAAATT
386 AGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA-TTTTTGGGGTTCGGGATTTTTTAAAATT
* * * *
16942634 CTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGCGATCCCTGTATTTTTGTTGGCATGCAC
450 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
16942699 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCA
515 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCA
*
16942764 TTTC-GACACTTTAATGGCTACTGGCAGCAAACCTGTAAGATCTCAAATGCTCTTTAAGGGGGTG
580 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
16942828 TTAGTTCTCAAGGTTTGATGAGGGATTGCGGGCCAACATAAGGGCCATGTACCAGCACCCATCGC
645 TTAGTTCTCAAGGTTTGATGAGGGATTGGGGGCCAACATAAGGGCCATGTACCAGCACCCATCGC
*
16942893 ACATCATGTGCGCACAGCCCCCCTCCGGCCCCCCGATCACTGGAACCCCAATGCTGCCGGTCAAG
710 ACATCATGTGCGCACAGCCCCCCTCCGGCCCCCCGATCACTGGAACCCCAATGCTGCCGGTCAGG
* * *
16942958 TTTTCCGGCAATGCTACGGATGCTGCCCCGACGAAGAAAAATGCGGTACCAGCATATGCCCGAGC
775 TTCTCCGGCGATGCTACGGATGCTGCCCCGACGAAGAAAAATGCGGTACCAGCACATGCCCGAGC
*
16943023 CCAGTATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCATATG
840 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCATATG
*
16943086 CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGGAATGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
*
16943151 CGGCCAGAGGGGCGGGATGCGCAAGTCGTGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGTGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCC
* * *
16943216 TATTGTCACAACCCTCGGTCTGGCCCCATCTTACACTGGGAATGAACTCTGTATGCCTAAGCCAA
131 TGTTGTCACAACCCTCGGTCTGGCCCCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
16943281 TCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
196 CCGACGAAACGAG-GGGCAGGCGGCCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
* * * *
16943346 GCTGTGGACCAATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
16943411 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * * * * *
16943476 GACTCATTTTGTATTTTTTATGATTTTCAAAACTTTCTGCGATTCGGGATTTTTCAAAATTTTTT
390 GACTCGTTTTCTATTTTTCACGATTTTCAAAA-TTTTTGGGGTTCGGGATTTTTTAAAATTTTTT
* * ***
16943541 TGGAAGGCGTTTTGGCCCCAAACTTGGTAGATACGATCCTTGTATTTTTGTTGGCATGCACAAAA
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
16943606 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTC
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTC
*
16943671 -GACACTTTAATGGCTACTGGCAGCAAACCTGTAAGATCTCAAATGCTCTTTAAGGGGGTGTTAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTAG
16943735 TTCTCAAGGTTTGATGAGGGATTGGGGGCCAACATAAGGGCCATGTACCAGCACCCATCGCACAT
649 TTCTCAAGGTTTGATGAGGGATTGGGGGCCAACATAAGGGCCATGTACCAGCACCCATCGCACAT
*
16943800 CATGTGCGCACAGCCCCCCTCCGGCCCCCCGATCACTGAAACCCCAATGCTGCCGGTCAGGTTCT
714 CATGTGCGCACAGCCCCCCTCCGGCCCCCCGATCACTGGAACCCCAATGCTGCCGGTCAGGTTCT
* * *
16943865 CTGGCGAT-CTACGGATGCTGCCCCGACGAAGAAAAATACGGTACCAGCACATGCTCGAGCCCAG
779 CCGGCGATGCTACGGATGCTGCCCCGACGAAGAAAAATGCGGTACCAGCACATGCCCGAGCCCAG
*
16943929 CATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCATATG
844 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCATATG
* *
16943988 CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGGAATGAACGTGCGGGTGCTCAGC
1 CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
* * *
16944053 CAGCTAGAGGGGCGGGATGCGCAAGTCGTGGATCGGTCGGGTCACCCTCTGCGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGTGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCC
16944118 TGTTGTCACAACCCTCGGTCTGGCCCCATCTTAGACTGGGAATGAACTCCGTATG-CTAAGCCAA
131 TGTTGTCACAACCCTCGGTCTGGCCCCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
16944182 CCGACGAAACGAGTGGACAGGCAGGCACCCGGGCGGGCACTATGCCGGCTAGAGAGACGGGATGC
196 CCGACGAAACGAG-GGGCAGGC-GG---CCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGC
*
16944247 GCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
256 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
*
16944312 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCA
321 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* *
16944377 AGACGAGTCGTTTTCTATTTTTCACGATTTTCAAAATTTTTGGGGTTCGGGATTTTTTAAAATTC
386 AGACGACTCGTTTTCTATTTTTCACGATTTTCAAAATTTTTGGGGTTCGGGATTTTTTAAAATTT
* * * ** * *
16944442 TTTCGAAAGGAGTTTTCGCTCCAAACACGGTAGACGTGATCCTTGTATTTTTGTAGGCTTGCACA
451 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
16944507 AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC-CTCA
516 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCAC-CA
* * * * * *
16944571 TTTCGGACACTTGAGTGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGAGCG
580 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * ** * * *
16944636 TGAGTTATGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
645 TTAGTTCTCAAGGTTTGATGAGGGATTGGGGGCCAACATAAGGGCCATGTACCAGCACCCATCGC
* * * *
16944701 ACATCATGTGCGGACA--CCCCC-CCGACCCCTCCGATC-GTCGGAACCCCAATGTTGCCGGTCA
710 ACATCATGTGCGCACAGCCCCCCTCCGGCCCC-CCGATCACT-GGAACCCCAATGCTGCCGGTCA
* *
16944762 GGTTCTCCGGCGA---T---G--G-TGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGA
773 GGTTCTCCGGCGATGCTACGGATGCTGCCCCGACGAAGAAAAATGCGGTACCAGCACATGCCCGA
* * * *
16944818 GCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
838 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCATATG
* * * * * **
16944883 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGTAACGAGCGTACGGGTACTCAAT
1 CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
* * * * * * **
16944948 TGGCCAGAGGGGTGGGATACGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGTGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCC
* ** * * * * *
16945013 TGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACAGGAAATGAACTCCGTATGCCTAAGCCAA
131 TGTTGTCACAACCCTCGGTCTGGCCCCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
16945078 CCGACGAAACGA---GCA--------GGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAG
196 CCGACGAAACGAGGGGCAGGCGGCCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAG
* * *
16945132 -CGTGGATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
261 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
16945196 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
326 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * *
16945261 ACTCGTTTTATATTTTTCATGATTTTTGAAAA-TTTTGTGGTTCGGTATTTTTTTAAAATTTTTT
391 ACTCGTTTTCTATTTTTCACGA-TTTTCAAAATTTTTGGGGTTCGGGA-TTTTTTAAAATTTTTT
*
16945325 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
16945390 AAATTCAGCTAAAAATTCGAAGTGTACAAGATTTTGTGACC
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
16945431 CCGGCCCCCC
Statistics
Matches: 2977, Mismatches: 247, Indels: 70
0.90 0.07 0.02
Matches are distributed among these distances:
879 156 0.05
880 155 0.05
892 2 0.00
895 271 0.09
896 178 0.06
897 1 0.00
898 2 0.00
901 29 0.01
902 297 0.10
903 591 0.20
904 144 0.05
905 316 0.11
906 478 0.16
907 357 0.12
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGTCGTGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCC
TGTTGTCACAACCCTCGGTCTGGCCCCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGGGGCAGGCGGCCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCACGATTTTCAAAATTTTTGGGGTTCGGGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTT
CTCAAGGTTTGATGAGGGATTGGGGGCCAACATAAGGGCCATGTACCAGCACCCATCGCACATCA
TGTGCGCACAGCCCCCCTCCGGCCCCCCGATCACTGGAACCCCAATGCTGCCGGTCAGGTTCTCC
GGCGATGCTACGGATGCTGCCCCGACGAAGAAAAATGCGGTACCAGCACATGCCCGAGCCCAGCA
TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCATATG
Found at i:16944001 original size:26 final size:26
Alignment explanation
Indices: 16943962--16944014 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16943952 CCGGTCCGAT
* *
16943962 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
*
16943988 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
16944014 C
1 C
16944015 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:16944886 original size:26 final size:26
Alignment explanation
Indices: 16944857--16944909 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16944847 CTGGTCCGAT
16944857 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16944883 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16944909 C
1 C
16944910 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16945606 original size:26 final size:26
Alignment explanation
Indices: 16945577--16945629 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16945567 CCAGTCCGAT
16945577 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
16945603 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
16945629 C
1 C
16945630 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:16946515 original size:26 final size:26
Alignment explanation
Indices: 16946479--16946531 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16946469 CTGGTCTGAT
*
16946479 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16946505 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16946531 C
1 C
16946532 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16947180 original size:898 final size:896
Alignment explanation
Indices: 16945429--16948258 Score: 3992
Period size: 898 Copynumber: 3.2 Consensus size: 896
16945419 GATTTTGTGA
* * *
16945429 CCCCGGCCCCCC-CGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCTGACGATGCTCCGAC
1 CCCCGGCCCCCCTCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGAC
*** * * * *
16945493 GATGGTGCCCCGGCAAAGAAAAATACAGCACCAACAAATGCCCGAGCCCAGCATGTGCTGTCGCA
66 GATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATACCCGAGCCCAGCATGTGCTGTCGCA
** * *
16945558 ACCCTCGGTCCAGTCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
131 ACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTC
* * ** *
16945623 CGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGATGGGCAGCCGGGC-A-AAGGGCGGGATG
196 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC-GGCTAGAGGGGCGGGATG
* * ** *
16945686 CGCAAGCCGGGGATCGGCCGGGTCCCCTTCTGCATGCTGCCGATCTTGCTGTGGCAACCCTCAGT
260 CGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATC-TGCTGCCGCAACCCTCGGT
* * * *
16945751 CCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAAAGAGCGTGCG
324 CCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-GACGAAACGAGCGGGCG
* * * * * * *
16945816 GGCGGTTGGGCGGGAACTACGCCGGCCAGAGAGACAGGATACGCAAGCTGTGGATCGATAGGGCG
388 GGC----GGGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * * * ** * *
16945881 ATAGGAGGGTTTTGGCACATCTTCATATTTTTGTGTTCCAATGCCATTTTTATGGCTTGTAAATT
449 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTTTGGCTTGTAAATT
* * *
16945946 CATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTGTC
514 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * *
16946011 ACAATTTTTGAAACTTTTTGTTGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCC
579 ACGATTTTTGAAAATTTTCG--GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
*
16946076 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAACTCG
642 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
16946141 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
707 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * * * **
16946206 GGCAACAAACCGGTAAAATCTCAAATGCTCTGTAAGGGGATGTGAGTTCTTGAGGTTTGATGACC
772 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGG
* * *
16946271 GATAAGGGGCCAATATAAAGGCCAAGTACCAGCACCCATTGCACATCACGTGCGCACACC
837 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACC
* *
16946331 CCCCGGCCCCCCT-GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGAC
1 CCCCGGCCCCCCTCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGAC
* * *
16946395 GATGGTGCCTCGATGAAGAAAAATGCGGCACCAACACATTCCCGAGCCTAGCATGTGCTGTCGCA
66 GATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATACCCGAGCCCAGCATGTGCTGTCGCA
* * *
16946460 ACCCTCGCTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTGGGAATGAACTC
131 ACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTC
* * * *
16946525 CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGACTAGAGGGGTGGGATGT
196 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCTAGAGGGGCGGGATGC
* * *
16946590 GCAAGCCGGGGATCGGTCGAGTCCCCCTCTGCGTGCTGCCGATGCTGCTGCCGCAATCCTCGGTC
261 GCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGAT-CTGCTGCCGCAACCCTCGGTC
* * * * * *
16946655 TGGTCTGATCTTATATTGGGAATGAGCTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGTGG
325 CGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGACGAAACGAGCGGGCGG
* *
16946720 GCGGGCGGGCACTATGCCGACCAGAGAGACGGGATGCGGAAGCCGTGGATCGATAGGTTGGTAGG
389 GCGGGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *
16946785 TGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTTTGGCCTGTAAATTCAAAC
454 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATAC
* *
16946850 AATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTATATTTTTCACGAT
519 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* *
16946915 TTTTGAAAATTTTACGGTTCGGTATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
584 TTTTGAAAATTTT-CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * * *
16946980 TGTAGACATGATCCTTGTATTTTTTTTGGCATACACAAAAAAATTCAGCTAAAAACTCGAAGTGT
648 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
16947045 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGC
713 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
16947110 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGG
778 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGG
* *
16947175 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACC
843 GGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACC
* * * **
16947229 CCCTGGCCCCCCTCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT-CAACGATGCTCCGGT
1 CCCCGGCCCCCCTCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGAC
*
16947293 GATGGTGCCCCGATGAGGAAAAATGCGGCACCAACACATACCCGAGCCCAGCATGTGCTGTCGCA
66 GATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATACCCGAGCCCAGCATGTGCTGTCGCA
* *
16947358 ACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGTTTGGGAATGAACTC
131 ACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTC
*
16947423 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCTAGAGGGGCGGGATAC
196 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCTAGAGGGGCGGGATGC
* * * * *
16947488 ACAAGCCAGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTACTGCCGCAACCCTCGATC
261 GCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGAT-CTGCTGCCGCAACCCTCGGTC
* * *
16947553 CGGTTTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCCGG
325 CGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGACGAAACGAGCGGGCGG
* * * *
16947618 GCGGGTGGGCACTATGCC-AGCTAGAGAGACGAGATGCGCAAGCCATGGATCGATAGGGTGGTAG
389 GCGGGCGGGCACTATGCCGA-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
16947682 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATT-GCTTGTAAATTCAT
453 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT-TTGGCTTGTAAATTCAT
* * * * *
16947746 ACAATCGTCCCTTAAGCCTTCACGTGAGGTTTCATGGCAAGACGACTCATTTTCTACTTTTCATG
517 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * * *
16947811 ATTTTTGAAACTTTTTGCGATTTGGGATTTTTTAAAATATTTTCGGAAGGAGTTTTGGCCCTAAA
582 ATTTTTGAAA-ATTTT-CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
*
16947876 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGGAG
645 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
16947941 TGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGC
710 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * * *
16948006 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTTCTCGAGGTTTAAGGAGGGAA
775 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGAT
* *
16948071 AGGGGGCCAATATAAGGGCCAAATACCAGCA-CCATTCGCACATCATGTGCGCGCATCCC
840 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATT-GCACATCATGTGCGCACA--CC
** *
16948130 CCCCGG-CCCTGTCGATCGCCGGAACCCCAATGCCGTCGGTCAGG---T---AC--T--T-CGAC
1 CCCCGGCCCCCCTCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGAC
* * * * * * *
16948183 GATGGTG-CCCGGTGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTA
66 GATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATACCCGAGCCCAGCATGTGCTGTCGCA
16948247 ACCCTCGGTCTG
131 ACCCTCGGTCTG
16948259 ATCCAATGGG
Statistics
Matches: 1727, Mismatches: 188, Indels: 39
0.88 0.10 0.02
Matches are distributed among these distances:
889 61 0.04
890 9 0.01
891 1 0.00
893 1 0.00
895 2 0.00
897 2 0.00
898 778 0.45
899 489 0.28
900 37 0.02
901 9 0.01
902 216 0.13
903 120 0.07
904 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (896 bp):
CCCCGGCCCCCCTCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGAC
GATGGTGCCCCGATGAAGAAAAATGCGGCACCAACACATACCCGAGCCCAGCATGTGCTGTCGCA
ACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTC
CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCTAGAGGGGCGGGATGC
GCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCTGCTGCCGCAACCCTCGGTCC
GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACGACGAAACGAGCGGGCGGGC
GGGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
TTGAAAATTTTCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACC
Found at i:16948314 original size:26 final size:26
Alignment explanation
Indices: 16948278--16948330 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16948268 GTTGACTTAG
16948278 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16948304 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16948330 G
1 G
16948331 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16949218 original size:26 final size:26
Alignment explanation
Indices: 16949182--16949234 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16949172 GTTGACTTAG
16949182 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16949208 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16949234 G
1 G
16949235 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16950099 original size:26 final size:26
Alignment explanation
Indices: 16950059--16950111 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16950049 GATGACTTAG
*
16950059 GCATACGGAGATCATTCCTAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
*
16950085 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
16950111 G
1 G
16950112 ATCAGACCGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:16951651 original size:4 final size:4
Alignment explanation
Indices: 16951642--16951666 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
16951632 CCAGCGTAAT
16951642 GCCC GCCC GCCC GCCC GCCC GCCC G
1 GCCC GCCC GCCC GCCC GCCC GCCC G
16951667 GCCACTCGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.72, G:0.28, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:16951890 original size:26 final size:25
Alignment explanation
Indices: 16951852--16951903 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
16951842 GTTGACTTAG
* *
16951852 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCA-TCCCAGTCTAA
*
16951878 GCATACGGTGTTCATCCCAGTCTAA
1 GCATACGGAGTTCATCCCAGTCTAA
16951903 G
1 G
16951904 ATCAGATTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:16953645 original size:26 final size:26
Alignment explanation
Indices: 16953608--16953658 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16953598 GTTGACTTAG
* *
16953608 GCATACGTAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16953634 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
16953659 GGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16954543 original size:26 final size:26
Alignment explanation
Indices: 16954507--16954559 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16954497 GTTGACTTAG
16954507 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
*
16954533 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
16954559 G
1 G
16954560 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:16955213 original size:899 final size:898
Alignment explanation
Indices: 16952777--16965239 Score: 16576
Period size: 900 Copynumber: 14.0 Consensus size: 898
16952767 AGTCTAACAT
* * * *
16952777 CGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCGCATTTTTCTTCGTCGAGG
1 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* ** * *
16952842 CACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GAGGGG
66 CACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
16952906 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTA
131 CC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
16952970 TCCCTCATCAAACCTCGAGAACTCAC-CCCCCTTAAAGAGCATTTGAGATTCTACAGGTTTGCTG
195 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
**
16953034 ATAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
260 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
16953099 TTCAAGTTTTTAGCTGAATTTTTTTGTGCAT-CAAACAAAAATAAAAGGATCACGTCTACCAACT
325 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * * * *
16953163 TTTGGGCTAAAACTCCTTTCGAAAAAATATTAAAAAATCTAGAACCGCAAAAGGTTTCGAAAATC
390 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATC
*
16953228 GTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
455 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
16953293 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
520 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
16953358 ACCGCCCTATCAATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
585 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * * *
16953423 CTCGCTCGTTTTGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGAC
650 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAAC
* * * * * * * *
16953488 CAAGGGTTACGGCAGCAAGATCAATAGCACGTAGAGGGGGGCCTAGCCGATCCCCGGCTTGCGCA
715 CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACC-CGCCGATCCCCGGCTTGCGCA
* * *
16953553 TCCCACCCCTCTGGCCGGCTGAGCACCCGCACGATCGTTTCGTGGGTTGACTTAGGCATACGTAG
779 TCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * *
16953618 TTCTTTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGGATCGGACCAGAC
844 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* *
16953673 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGG
1 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
*
16953738 CACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA-CGGGGGGG
66 CACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
* ** *
16953802 CCGAGGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGTAAATGG-CCTT-TA-TAGCCCCCTA
131 CCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
16953864 TCCCTCATCAAACCTCGAGAACTCAC-CCACCCTTAAAGAGCATTTGAGATTTTACA-ATGTTGC
195 TCCCTCATCAAACCTCGAGAACTCACACC-CCCTTAAAGAGCATTTGAGATTTTACAGGT-TTGC
16953927 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
258 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
16953992 ACTTCGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAC
323 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA-
*
16954056 A-TTTGGGGCCAAAACTCCTTCC-ATAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAA
387 AGTTTGGGGCCAAAACTCCTTCCGA-AAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAA
*
16954119 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
451 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * *
16954184 TGTATGAATTTACATGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGAGCCTAAACCC
516 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
* * * * *
16954249 ACCTACCACCCTATTGATCAATGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCTGCCCG
581 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* ** *
16954314 CCCGTCCACCCACTCGTTTCGTAAGTTGGCTTATGCATACGGAGTTCATTCCCAGTCTAAGATCG
646 CCCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
** * * *
16954379 GACCGAATTGAGGGTTGTGGCAACAGGATCGACAGCATGCCA-AGGGGGACCCAGCCGATCCCCG
707 GACCGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACG-CAGAGGGGGACCC-GCCGATCCCCG
*
16954443 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGG
770 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGG
*
16954508 CATACGGAGTTCAATCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
835 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * *
16954572 CGAGGGTTGCGGCAGCAAATGCTGGGCTCGGGCATGTGTTGGTACCACATTTTTCTTCATCGGGG
1 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * * * *
16954637 CACTATCGTCGGAGCATCACCGGAGAACCTGACCAGCGGCACTAGGGTTCCGGCAAT-GGTGGGG
66 CACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGG
* *
16954701 GCCGGGGGGTGTCCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAA
130 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
16954766 TCCCTCATCAAACCTCGAGAACTCACACCTCGTTAAAGAGGATTTGAGATTTTACAGGTTTGCTG
195 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
16954831 CCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACAC
260 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * *
16954896 TTCGAGCTTTTAACTGAATTTTGTTGTGCATGCCAACAAAAATACAAGGATCATGTCTTCCAAGT
325 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
16954961 TTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTGGAACCGTAAAAAGTTTCAAAAATC
390 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATC
* *
16955026 ATGAGAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
455 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
16955091 TGAATTTACAAGCCATAAAAATGGCATTGGGACGTAGAAATATGAAGATGTGCCTAAACCCACCT
520 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* *
16955156 ACCACCCTATCGATCCAAGGCTTGCGCATCCCGTTTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
585 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * *
16955221 CCCGTTCGCTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACC
650 -CC---CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * * * * * *
16955286 AAACTGAGGGTTGTGGTAGCAGGATTGATAGCTCTCATAGGGGGACCCGGTCGATCCCCGGCTTG
711 GAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCC-GCCGATCCCCGGCTTG
* *
16955351 CTCATCCCTCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
775 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * **
16955416 AGAGTTCATTCCCAGTCTAAGCATATGGTGTTCA-TCCCAGTCTAAGATCGGATTGGAC
840 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * * * ** **
16955474 CGAGGGTTACGACAGCACGTGCTGGGCTTGAGCATGTGTTGGTGTTGCATTTTTCTTCACCGGGG
1 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
*
16955539 CACCATCG-CTGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGG
66 CACCATCGTC-GGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG
* * * * *
16955602 GCCGGGGGGGGTGTGCACAGGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGTCCCCTA
130 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
16955667 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
195 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
16955732 CCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTATACAC
260 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
16955797 TTCGAGTTTTTAGCTGTATTTTTTTGTGCATACCAACAAAAATACAAGGATCACATCTACAAAGT
325 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * **
16955862 TTGTGGTCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACAGCAAAAA-TTTTGAAAAT
390 TTG-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAAT
* * *
16955926 CGTGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACGTGAAGGCATAAGGGATCATTGT
454 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
16955991 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACC
519 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* **
16956056 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGATGTAGT--------GCCC
584 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * * * *
16956113 GCCCGCTTGTTTTGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGA
649 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAA
* * * * * *
16956178 TCAAGGGTTGTGACAGCACGATCGATAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGC
714 CCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCG-CCGATCCCCGGCTTGCGC
* * ** ** **
16956243 ATCCCG-CCTTCTGGCCGGCTAATTACCCGCACGCTCGTTTCGTGTTTTGACTTAGGCATACAAA
778 ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * *
16956307 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAAT
843 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * *
16956363 CGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGG
1 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* *
16956428 CACCATCGTCGGAGCATCATCGAAGAACCTGACCGGCGACATTGGGGTTCCGACGA-CGGGGGGG
66 CACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
*
16956492 CCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
131 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
16956557 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGC
196 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * * *
16956622 CAGTAGCCATTAAAGTGTCCGCAATGGGGACACTTTTTTGAAATGGGCACAAAATCTTATACACT
261 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * *
16956687 TCGAGTTTTTAGCTAAATTCTTTTGTGCATGACAA-AAAAATAAAAGGATCATGTCTACCAAGTT
326 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * *
16956751 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCA
391 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCG
* *
16956816 TGAAAAATAGAAAAGGAGTCGTCTTGCCATGATACTTCACGTGAAGGCTTAAGGGACCATTGTAT
456 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * **
16956881 GAATTTACAAGTCATAAAAATGTCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTA
521 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
16956946 TCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACATAGAGCCCGCCCGCCCGC
586 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * * *
16957011 TCGCTTGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAACATTGGATCG
651 -C-C--GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* * * * * *
16957076 GACCGAGGGTTGCAGCAGTAGGATCGACAGCACACAGAGGGGGA-CCACCGATCCCCGGCTTGCA
712 AACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGCCGATCCCCGGCTTGCG
* * * * *
16957140 CATCCCGCCCCTCTGGCCAGCTGAGCACCCGTACGCTCATTTCGTGGGTTTACTTAGGCATACGA
777 CATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
** * *
16957205 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGAC
842 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * *
16957262 TGAGTGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGG
1 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
** * * **
16957327 CACTGTCGTCGGAGCATCGTCGAAGAACCTGACCGGCGGCATTGGGGTTTTGACGATCGGGGGGG
66 CACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
*
16957392 CCGATGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCC
131 CC---GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
16957457 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAAGAGCGTTTGAGATTTTACAGGTTTGC
193 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
16957522 T-CTCAGTAGCCATTAAAGTGTCTGAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTA
258 TGC-CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
16957586 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATGAAGTCTACCA
322 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * *
16957651 AGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAAAATCTGGAACCGCAAAAAGTTTTAAAA
387 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAA
* *
16957715 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGGCCATT
452 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
16957780 GTATGAATTTACCAGCCATAAAAATGGTATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
517 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
* * ** * *
16957845 CCTACCACCCTATCGATCCACGCCTTGCGTATCCTTTCTCTCTGGCCCGTGTAGTGCCCGCTTGA
582 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC----
* * *
16957910 CCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATGCGGAGTTCATTCCCAGTCTAAGATTGG
643 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
** *
16957975 ACC-AGATTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGA
708 ACCGA-ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCG-CCGATCCCCGG
* * * * * * ** *
16958039 CTTGCGCATCTCACCCTTTTGGTCGGCTGAGCACTCGCACGCTCGTTTAATAGGTTGACTTAGGC
771 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
16958104 ATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A--C-----T-GGACC--A-
836 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * * * *
16958143 --AGGTTTGAGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTGCTTCGCCAGCG
1 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * * * * *
16958206 TACCATCGCCGGAGCATCACCGGAGAACCTGACCGACCGTATTGGGGTTCTGACGATCGGAGGGG
66 CACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
*
16958271 CCGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCT
131 CC---GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *
16958336 TATCCCTTATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGC
193 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
16958401 TGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACAC-TTTTTCAAATGGTCGCAAAATCTTGTAC
258 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
16958465 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
323 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * * * * **
16958530 GTTTGGGACTAAAACTCGTCCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAA
388 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAA
* * * *
16958595 TTGTGAAAAATTGAAAACGAGTCGTCCTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTG
453 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
16958660 TATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGCAATATGAAGATGTGCCTAAACCCAC
518 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* ** *
16958725 CTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCTAGCGTAGTGCCCGCCTGCC
583 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * * * * * * *
16958790 CGCCCGTTCGTTTCGTCGGTTGACTTAGACATACGGAGTTCATTCCTAGTGTAAGATCAGATCGG
648 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA
* * **
16958855 ATCGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGA----CC--T----GGC---CG-
713 ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGCCGATCCCCGGCTTGCGC
* * * * ** * **
16958906 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGTTTGTTTTATGGGTTAACTTAGTTATACGGA
778 ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
*
16958971 GTTCATTCCCAGTCTAAGCATA-GGAGTTCATTCCCAGTCTAAGATCGGATCGGAC
843 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * *
16959026 CGAGGGTTACGGCAGCACATGCTAGGCTCGGGCATGTGCTCGTGCCGCATTTTTCTTCGTTCAGG
1 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-TCGGG
* * * * *
16959091 GCACAATCGTCGGAGCATCATCTGAGAACCTGACCGGCGACATTGGAGTTCCGACGATCGGAGGG
65 GCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG
* * *
16959156 GCCGGGGGTTGCGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
130 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
16959221 TCCCTCATCAAATCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
195 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
16959286 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACAC
260 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
16959351 TTCGAGTTTTTCGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAGCAAGT
325 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * **
16959416 TTGGGGCAAAAAATCCATT-CGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTTGAAAAT
390 TTGGGGCCAAAACTCC-TTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAAT
*
16959480 CGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
454 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * * *
16959545 ATGAATTTCCAAGCCATAAAAATGGCATTCGCATGCAAAAATATGAAGATGTACCTAAACCCACC
519 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
16959610 TACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGAGCCCACCCGCCC
584 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * * * * *
16959675 GCTCGTTTGTTTCGTCGGTTGGCTTAGGCTTACGGAGTTCATTCCCAGTCTAAGATTGAATCGAA
649 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAA
* * * * * *
16959740 CCAAGGTTTGAGGCAGCAGGATCGACAGCATGCAGAGGGGGACCCAGCCGACCCCCGGCTTGTGC
714 CCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCC-GCCGATCCCCGGCTTGCGC
* * * *
16959805 ATCCCGCCCCTCTTGCCGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
778 ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * * * *
16959870 GTTCATTCTCAATCTAAGCATACAGAGTTCATTCCCAGCCTCAGATCGGACCGAAC
843 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * *
16959926 CAAGGGTTACGGCAGCACATACTGGGCTCGGGCATGTGCTGATGCTGCATTTTTCTTCGTCGGGG
1 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* *** * *
16959991 CACCATCGTCAGAGCATTGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGG
66 CACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG
*
16960056 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTA
130 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
16960121 TCCCTTATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
195 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
16960186 CCA-TAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACAC
260 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
16960250 TTCGAGTTTTTAACTGAATTTTTTTGTGCATGCCAACAAAAGTACAAGGATCAAGTCTACCAAGT
325 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * *
16960315 TTGGGACCAAAACTCCTTCCGAAAAAATTTTTAAAAACTCCCGAACCGTAAAAAGTTTCAAAAAT
390 TTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAAT
* * *
16960380 CATGAAAAATAGAAAACGAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGC
454 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *** * *
16960445 ATGAATTTACAGGAGGTAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAGCCCACC
519 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* *
16960510 TACCACCCTATCGATCCACGGCTTGAGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
584 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * * *
16960575 GCCCACTCGTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAACATTGGACCGGA
649 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAA
** * * * ** *
16960640 CCGAGGGTTGCGATAGCAGGATC-AGTAGCACGTAGAGGGGGACTCGACCGATCCCAAGCTTGCA
714 CCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCG-CCGATCCCCGGCTTGCG
* * * * * *
16960704 CATCCCGCCCCTCCGACCGGCTGAGCGCCCGCACGCTCGTGTCTTGGGTTGACTTCGGCATACGG
777 CATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
16960769 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAATATCGGACCGGAC
842 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * *
16960826 CAAGGTTTGCGGCAGCACATGCTGGGCTCGGGCATTTGCTGGTGTCGCATTTTTCTTCGTCGGGT
1 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* ** * * ** * * *
16960891 CACCATCGTCGAAGCATCGCCAGAGAACGTGACAAGCGGCATTGGGATTCTGGCGATCGGGGGGG
66 CACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
* *
16960956 TCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTA
131 -CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
16961021 TCCCTCATCAAACATCAAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTG
195 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
16961086 TCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
260 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
16961151 TTCGAGCTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
325 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* *
16961216 TTGGGGCCAAAACTACTTCCAAAAAAATTTTAAAAAAATCTCGAA-CGCAAAAAGTTTCAAAAAT
390 TTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCTCGAACCGCAAAAAGTTTCAAAAAT
* *
16961280 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
454 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
16961345 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
519 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
** **
16961410 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTTGGAATAGT----GCCCGCCC
584 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
** * * *
16961471 GCCCATTCCTTTCGTCGGTAGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGG-CC-A
649 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCGA
* * * * *
16961534 GACCAAGAGTTGTGGCAGCAAGATC-AGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTG
713 -ACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCG-CCGATCCCCGGCTTG
* *
16961598 CGCATCCCGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATAC
775 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * ** *
16961663 GGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCACTCTAAGATCGGATTGGAT
840 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * *
16961722 CGAGGGTTGCGGTAGCACATGTTGGGCTCGGGCATTTGCTGGTGCCGCATTTTTCTTCGTCGGGG
1 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * * *
16961787 CACCATTGCCGGAGCATCATTGCAGAACCTGACCGACGGCATTGGGGTTCCGATGATC-GGGGGG
66 CACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
* * *
16961851 CCAGGGGGTGTACGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
131 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
16961916 CCCTCATCAAACCTTGAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
196 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
16961981 CAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
261 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
16962046 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
326 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * *
16962111 TGGGGCCACAACTCCTTCC-AAAAAACTTTTAAAAAATC-CTAAACCGCAAAAAGTTTCCAAAAT
391 TGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAAT
* *
16962174 CGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGT
454 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* **
16962239 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGACATGCCTAAACCCACC
519 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * * *
16962304 TACCACCCTATCGATCCACGGCTTGCGTATCACATCTCTCTGGTCGGCGTA------G--CACCT
584 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * *
16962361 GCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGGTCATTCCCAGTCTAAGATCAGACTGAA
649 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAA
* * * * * * * ** *
16962426 CCAAGGGTTCCGGTAGTAGGATCGGCACCAC-AAGAGGGGGACCCGGCCGATCCCCGAATTGTGC
714 CCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCC-GCCGATCCCCGGCTTGCGC
* * ** * *
16962490 ATCTCGCCCC-CTAGCCGGCTGAGTGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATATGGA
778 ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* *
16962554 GTTCATTCCCAATCTAAG-AT--TG-G---A----C---C----A---GACC-GA-
843 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * * * * *
16962587 --A-GGTCGTGGTAGCACATGTTGGGCTCAGGCATGTGCTAGTGCCGTATTTTTCTTTGTCGGGG
1 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * * *
16962649 CACCA-CTGCCAGAGCATCAAT-GGAGAACCTTACCGGCTGCATTGGGATTCTGACGATCGGGGG
66 CACCATC-GTCGGAGCATC-ATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG
* * *
16962712 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCGATACTTGGCCCTTATATTGGCCTCCT
129 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
16962777 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTAAAAGAGCATTTGAGATTTTATAGGTTTGCT
194 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
16962842 GCTACTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
259 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
16962907 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
324 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * * * *
16962972 TTTGCGGCCAAAACTCCTTCCCAAAAGATTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAAT
389 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAAT
* *
16963037 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACATCACGCGAAGGCTTAAGGGACCATTGT
454 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
16963102 ATGAATTTACAGGCCATAAAAATGGCATTGGCACAG-AGAAATATGAAGATGTGCCTAAACCCAT
519 ATGAATTTACAAGCCATAAAAATGGCATTGGCAC-GCAGAAATATGAAGATGTGCCTAAACCCAC
* * *
16963166 CTACCACCCTATCGATTCACGGCTTTCACATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCC
583 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--TG--C-CC
* * * * *
16963231 GACCCACCCACCCGTTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
641 G-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * ** *
16963296 CAGACCGAACCGAGGGTTGCGACAGTAGGATCGACAGCATGTAGAGTTGGACCCGACCGATCCAC
705 CGGACCGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCG-CCGATCCCC
* * * *
16963361 GGCTCGCACATCCCGCCCCTCTGGCCGGCTGACCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
769 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** * ** * **
16963426 GCATACGGAGTTCGTTCGTAGTCTAAGCATACGGAGTTCATTCGCAGTCTAAGATCTAAGCATA-
834 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * *
16963490 C-A-GGTTACGGCAACACACGTTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG-CTGGG
1 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGG
* * * * *
16963552 GCACCATCGTCGGAGCATTATCGGAGAACCTGACCGACGACATTGGGG-TCCCAGCAATCGGGGG
65 GCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGG
* *
16963616 GGCCGGGAGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCC
129 GGCC-GG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
16963681 CTATCCCTCATAAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
192 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
16963746 CTGCCAGTCGCCATTAAAGTGTCAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
257 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
16963811 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG---ACGTCTACCA
322 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* *
16963873 AGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAGTC-CTGAA-CGCAAAAAGTTTCAAA
387 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAA
16963936 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
451 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * * *
16964001 TGTATGAATTTACAAGCCATAAAAATCGCATTGGCATGCATAAATATGAAGATGTCCCTAAGCCC
516 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
* * * * **
16964066 ACCTACCACCCTATCGATCCACGGCTTGCGTATCCCATCTTTCTGGCTGGAATCA-TGCCCGCCT
581 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT-AGTG--C-CC-
* *
16964130 GCCCGCCCGCCCGTTCGTTTCGTCGGTAGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
641 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
16964195 GGACCGGACCAAGGGTTGTGGCAGCAGGATC-AGCAGCACTCAGAGGGGGACCCGATCGATCCCC
706 GGACCGAACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCG-CCGATCCCC
* * * * * * *
16964259 AGCTTGCGCATCCCG-CCTTCTGGCTGGCTGAGCGCCTGCACGCTCATTTCGTGAGTTGACTTAG
769 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** * *** *
16964323 GCATACGGAGTTCATTCCTAGTCTAAGCATATAGAGTTCATTCCCACTCTAAGATCGGATTTGAT
834 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * *
16964388 CGAGGGTTGCAGTAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGG
1 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * **
16964453 CACCATTGCCGGAGCATCATTGGAGAACCTGACTGGCGGCATTGGGGTTCCGGTGATCGGGGGGG
66 CACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
* *
16964518 CCGGGGGTGGTGTGCGCACATGATGTGTGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
131 CC-GGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
16964583 ATCCCTCATCAAACCTTGAGAACTCAC-TCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCT
194 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
16964647 GCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
259 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
16964712 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAAAAAAAATACAAGGATCACGTCTACCAAA
324 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * *
16964777 TTTGGGGCCACAACTCCTTCC-AAAAAACTTTTAAAAAATCCCGAACCGCAAAAAGTTTCCAAAA
389 TTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAA
* * *
16964841 TCGTGAAAAATGGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTG
453 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
16964906 TATGAATTTACAAGCCACAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAC
518 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * *
16964971 CTACCACCCTATCGATCCACGGCTTGCGCATCACGTCTATCTGGCTGGCGTAGT--------GCT
583 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * * * * *
16965028 TGCCCGCTCGTTTTGTCGATTGGCTTAGGCATACGGAGTTCTTTCCCAGTCTAAGATCAGACCAA
648 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA
* * * * * * * *
16965093 ATCGAGGGTTACGGAAGCAGGATCGGCACCAC-AAGAGGGGGACCCGGCCAATCCCCGGATTGCG
713 ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCC-GCCGATCCCCGGCTTGCG
* ** * * * *
16965157 CATCCCGCCCC-CTAGCCGGCTGAGTGCCCGCACACTCCTTTCGTGGGTTGATTTAGGCATATGG
777 CATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
16965221 AGTTCATTCCCAGTCTAAG
842 AGTTCATTCCCAGTCTAAG
16965240 ATCGGACCGG
Statistics
Matches: 10195, Mismatches: 1170, Indels: 410
0.87 0.10 0.03
Matches are distributed among these distances:
860 68 0.01
861 4 0.00
862 99 0.01
863 465 0.05
864 9 0.00
866 2 0.00
867 2 0.00
868 1 0.00
870 3 0.00
872 1 0.00
874 2 0.00
875 96 0.01
876 1 0.00
877 1 0.00
878 116 0.01
879 549 0.05
880 36 0.00
881 64 0.01
882 4 0.00
883 151 0.01
884 412 0.04
885 54 0.01
886 60 0.01
887 48 0.00
888 346 0.03
889 489 0.05
890 174 0.02
891 86 0.01
892 6 0.00
893 22 0.00
894 496 0.05
895 401 0.04
896 491 0.05
897 99 0.01
898 156 0.02
899 1005 0.10
900 1343 0.13
901 592 0.06
902 545 0.05
903 1218 0.12
904 156 0.02
905 89 0.01
906 225 0.02
907 8 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
CACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCG
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACC
GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGCCGATCCCCGGCTTGCGCATC
CCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
Found at i:16957226 original size:26 final size:26
Alignment explanation
Indices: 16957197--16957249 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16957187 GTTTACTTAG
16957197 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
16957223 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16957249 G
1 G
16957250 ATCAAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16960797 original size:26 final size:26
Alignment explanation
Indices: 16960761--16960812 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
16960751 GTTGACTTCG
16960761 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16960787 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16960813 TATCGGACCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16961693 original size:26 final size:26
Alignment explanation
Indices: 16961657--16961709 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16961647 GTTGACTTAG
* * *
16961657 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCACTCTAA
16961683 GCATACAGAGTTCATTCCCACTCTAA
1 GCATACAGAGTTCATTCCCACTCTAA
16961709 G
1 G
16961710 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCACTCTAA
Found at i:16963456 original size:26 final size:26
Alignment explanation
Indices: 16963426--16963478 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16963416 GTTGACTTAG
* *
16963426 GCATACGGAGTTCGTTCGTAGTCTAA
1 GCATACGGAGTTCATTCGCAGTCTAA
16963452 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCGCAGTCTAA
16963478 G
1 G
16963479 ATCTAAGCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCGCAGTCTAA
Found at i:16964783 original size:902 final size:897
Alignment explanation
Indices: 16962545--16965239 Score: 3620
Period size: 903 Copynumber: 3.0 Consensus size: 897
16962535 GTTGACTTAG
* ** * * *
16962545 GCATATGGAGTTCATTCCCAATCTAAGATTGGACCAGACCGAAGGTCGTGGTAGCACATGTTGGG
1 GCATATGGAGTTCATTCCCAATCTAAGATCGGATAAGATCG-AGGTTGCGGTAGCACATGTTGGG
* * * * * *
16962610 CTCAGGCATGTGCTAGTGCCGTATTTTTCTTTGTCGGGGCACCACTGCCAGAGCATCAATGGAGA
65 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCATTGGAGA
* * * * *
16962675 ACCTTACCGGCTGCATTGGGATTCTGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * **
16962739 CGATGGGTGCCGATACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * * * *
16962804 ACCCCCTAAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTACTAGCCATTAAAGTGTTTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
16962869 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
16962934 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACTCCTTCCCAAAAG
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CCAAAAA
* * *
16962999 ATTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
16963064 GCCATGAAACATCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
16963129 TTGGCACAGAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTATCGATTCACGGCTTTCA
584 TTGGCA-TGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
16963194 CATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCC-GACCCACCCACCCGTTCGTTTCATCGG
648 CATCCCGTCTATCTGG-CTG-G-A-T--CTGCCCGCCTG-CCCGCCCGCCCGTTCGTTTCGTCGG
* * *
16963258 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGTA
706 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCA
* ** * * *
16963323 GGATCGACAGCA-TGTAGAGTTGGACCCGACCGATCCACGGCTCGCACATCCCGCCCCTCTGGCC
771 GGATCG-CAGCACT-AAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGCC
* * * *
16963387 GGCTGACCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCGTTCGTAGTCTAA
833 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * * * * * *
16963452 GCATACGGAGTTCATTCGCAGTCTAAGATC---TAAGCATAC-AGGTTACGGCAACACACGTTGG
1 GCATATGGAGTTCATTCCCAATCTAAGATCGGATAAG-AT-CGAGGTTGCGGTAGCACATGTTGG
* * * * * *
16963513 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG-CTGGGGCACCATCGTCGGAGCATTATCGGA
64 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATTGCCGGAGCATCATTGGA
* * * * * *
16963577 GAACCTGACCGACGACATTGGGGTCCCAGCAATCGGGGGGGCCGGGAGGGGTATGCGCACATGAT
128 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGG-GGGGTGTGCGCACATGAT
* *
16963642 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATAAAACCTTGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
* *
16963707 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTCGCCATTAAAGTGTCAGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
16963772 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
16963837 TTGTGCATGCCAACAAAAATACAAGG---ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAA
* *
16963899 AAAATTTTAAAAAGTCCTGAA-CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
451 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
16963963 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATC
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
16964028 GCATTGGCATGCATAAATATGAAGATGTCCCTAAGCCCACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCATG-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
16964093 GCGTATCCCATCTTTCTGGCTGGAATCATGCCCGCCTGCCCGCCCGCCCGTTCGTTTCGTCGGTA
645 GCGCATCCCGTCTATCTGGCTGG-ATC-TGCCCGCCTGCCCGCCCGCCCGTTCGTTTCGTCGGTT
* * * *
16964158 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCAGG
708 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGG
* * * * *
16964223 ATCAGCAGCACTCAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCGCCTTCTGGCTGGCT
773 ATC-GCAGCACTAAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCTCTGGCCGGCT
* *
16964288 GAGCGCCTGCACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
837 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * ** * * *
16964349 GCATATAGAGTTCATTCCCACTCTAAGATCGGATTTGATCGAGGGTTGCAGTAGCACATGCTAGG
1 GCATATGGAGTTCATTCCCAATCTAAGATCGGATAAGATCGA-GGTTGCGGTAGCACATGTTGGG
*
16964414 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATTGCCGGAGCATCATTGGAGA
65 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCATTGGAGA
* *
16964479 ACCTGACTGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGTGGTGTGCGCACATGATGT
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGG-GGTGTGCGCACATGATGT
* *
16964544 GTGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* * *
16964609 C-TCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
16964673 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
16964738 GTGCATGCAAAAAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCACAACTCCTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * *
16964803 ACTTTTAAAAAATCCCGAACCGCAAAAAGTTTCCAAAATCGTGAAAAATGGAAAATGAGTCGTCT
454 A-TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
16964868 TGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
16964933 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCATG-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** ** * *
16964998 GCATCACGTCTATCTGGCTGG--C-G-TAG--TGCTTGCCCG--C--TCGTTTTGTCGATTGGCT
647 GCATCCCGTCTATCTGGCTGGATCTGCCCGCCTGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCT
* * * * *
16965053 TAGGCATACGGAGTTCTTTCCCAGTCTAAGATCAGACCAAATCGAGGGTTACGGAAGCAGGATCG
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATC-
* * * * * * *
16965118 GCACCAC-AAGAGGGGGACCCGGCCAATCCCCGGATTGCGCATCCCGCCCCCTAGCCGGCTGAGT
776 GCAGCACTAAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCTCTGGCCGGCTGAGC
* * * * *
16965182 GCCCGCACACTCCTTTCGTGGGTTGATTTAGGCATATGGAGTTCATTCCCAGTCTAA
841 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
16965239 G
1 G
16965240 ATCGGACCGG
Statistics
Matches: 1569, Mismatches: 196, Indels: 63
0.86 0.11 0.03
Matches are distributed among these distances:
890 97 0.06
891 76 0.05
893 1 0.00
895 8 0.01
897 95 0.06
898 130 0.08
899 154 0.10
900 192 0.12
901 10 0.01
902 219 0.14
903 232 0.15
904 101 0.06
905 3 0.00
906 225 0.14
907 26 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATATGGAGTTCATTCCCAATCTAAGATCGGATAAGATCGAGGTTGCGGTAGCACATGTTGGGC
TCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCATTGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTATCTGGCTGGATCTGCCCGCCTGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGCAGC
ACTAAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
Found at i:16968593 original size:865 final size:869
Alignment explanation
Indices: 16966716--16972793 Score: 6178
Period size: 865 Copynumber: 6.9 Consensus size: 869
16966706 ATCCACGGCT
* * * * * *
16966716 TGCGAGGGGGGTGTGCACACATGATGTGCGATGGATGCTGGTCCTTGGCTCTTATATTGGCCCCT
1 TGCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
16966781 TATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGC
66 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
16966846 TACCAGTAGTCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
131 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
16966911 ACTTCGAGTTCTCTAGCCGAAAATTTTTTTGTGCATG-CAA-AAAAATAGCACGGAT-ATGTCTA
196 ACTTCGAGTT-TTTAGCTG--AATTTTTTTGTGCATGCCAACAAAAATA-CAAGGATCACGTCTA
* * ** *
16966973 CC-AGTTTTGGGGCCGAAAAATCCTTCCATAAAAATTTTAAAAAAT-TTGAACCGCAAGAAAGTT
257 CCAAG-TTTGGGGCC-AAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACGGCAA-AAAGTT
* *
16967036 TC-AAAATCGTG-AAAATAGAAAACGAGTCGTCTTG-CATGAAACTTCACGTGAAGGCTTAA-AG
319 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
*
16967097 -CCA-TGTATGAATTTAC-A--CAT--AAATGGCATTGG-A-GCAGAAATATGAAGATGTGTCT-
384 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * ** *
16967152 AACCGA-C-ACACACTCCTTTCGGAT-CACAACTTGCGCAT-CCGT-TCT-TGGCCG-TGTAGT-
449 AACCCACCTAC-CAC-CCTATC-GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
** *
16967209 -----CCGGGCGCCCGCTCGTTTCAATC-GATTGGCTTAGG-ATACAGAGTTC-TT--CAGTCTA
511 CCCACCCGCCCGCCCGCTCGTTTC-ATCAG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * * *
16967264 AGAT-TGACAGGCAGAGGGTTTGTGGCAGCAAAGGATCGACAGCACGA-AGAGGGGGACCCGGCC
574 AGATCAGACCGACCGAGGG-TTGCGGTAGC-AA-GATCG-CAGCAC-ACAGAGGGGGACCCGACT
* ** * *
16967327 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGTTGAGCTCCCGTACGCTCGTTTCGTGGGTT
634 GATCCCC-GCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTC-------
* * * * *
16967392 GAGTTAGGGATATAGAGTTGATTCCGAATCTAAGCATACGAAGTTCATTCCTAGTCTAGGATTGG
691 --G-T-GGG-T-TAGAG--CA-TCC--A-GT--GCATACGAAGTTCATTCCCAGTCTAAGATCGG
* * * * * *
16967457 ACC-GAACCGAGGGTTACGGCCGCACATGCTGGGCTCGAGCATGTGCTTGTGTCGTATTTTTCTT
742 ACCAG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * *
16967521 CGTCGGGGCACCATCGCCGGAGCATCACCGAAAAACCTGACCGGCGGCATCAGGGTTCCGGCGA
806 CGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTAGGGTTCCGGCGA
* * * *
16967585 TCGGGGGGGCCGAGGGGGGTGTGTGCACATGATGTGTGATGGGTGCTTGTACTTGGCCCTTATAT
1 T-------G-CGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
16967650 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTAC
58 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
16967715 AGGTTTCCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
123 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * *
16967780 TCTTGTACACTTCAAGGTTTTAGCTGAATTTTTTTCTGCATGCCAACAAAAATACAAGGATCATG
188 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
** *
16967845 TCTACCAAGTTTGGGGCCAAAACTCCTTTAAAAAAAATTTTAAAAAATCCTGAACGGCAAAAAGT
253 TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACGGCAAAAAGT
*
16967910 TTCAAAAATCATGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
318 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * * * * *
16967975 GACAATTGTATGAATTTAAAAGCCAAAAAAATGGCATTGCCATGTAGAAATATGAAGATATGCCT
383 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * ** * * *
16968040 AAACCCACCTAACACACTATCGATCCACGGCTTGCGTGTCCCGTCTCTCTGGCTGGCATAGTGCC
448 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
* * * * *
16968105 CGCCCGCCCACCTGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTCCATTCCCAGTCTAAGAT
513 CACCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * *
16968170 CAGACCAGATCGTGGGTTGCAGTAGCAAGATCAGCAGCATACAGATGGGGACCAGACTGATCCCC
578 CAGACC-GACCGAGGGTTGCGGTAGCAAGATC-GCAGCACACAGAGGGGGACCCGACTGATCCCC
* * *
16968235 GCATTGCGTATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTA-A-C-T
641 GC-TTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTAGAGCAT
* * *
16968297 -CAG-GCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATG
705 CCAGTGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATG
* *
16968360 CTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGCACCATCGCCAGAGCATCACC
770 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACC
*
16968424 GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGA
835 GGAGAACCTGACCGGCGGCATTAGGGTTCCGGCGA
* *
16968459 T-CGGGGGGGGTGTGCGCACATGATGTG-GAATGCGTGCTAGTACTTGGCCCTTATATTGGCCCC
1 TGCGGGGGGGGTGTGCGCACATGATGTGCG-ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
16968522 CTATCCCGCATCAAACCTCAAGAAGTCAC-CCCCATTTAAAGAGCATTTGAGATTTTACAGGTTT
65 CTATCCCTCATCAAACCTCAAGAACTCACACCCC-CTTAAAGAGCATTTGAGATTTTACAGGTTT
*
16968586 GCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
129 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
16968651 ACACTTCAAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAGTACAAGGATCACATCTACC
194 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * * **
16968716 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTTGAA
259 AAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACGGCAAAAAGTTTCAAA
* * * * * *
16968781 AATCGTGACAAATAGAAAACGAGCCGTCCTGCCATG-AACTTCAACTTGAAGGCTTAAGGGACAA
324 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC-ACGTGAAGGCTTAAGGGACCA
** *
16968845 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAAGAAGATGTGCCTAAACC
388 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* ** * * *
16968910 CACCTACCACCCTATCGATCTACGGCTTGCTTATCCCGCCTCTCTGGCCGACTTAGTGCCCGCCC
453 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCC
* * * * * * ** *
16968975 GCTCGCCCGTTCGTTTCATCGGTTGGGTTAGGCATACGGAGTTCATTCCTAGTGTAAGATTGGTT
518 GCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-A
* * * * ** ** *
16969040 CGGGCTGAGGGTTGCGGTAGCAGGATCGACAATACGTAGA-GGGG----GACT-A----GGCTTG
582 CCGACCGAGGGTTGCGGTAGCAAGATCG-CAGCACACAGAGGGGGACCCGACTGATCCCCGCTTG
* * * * * *
16969095 CGCATCCCGCCCCTCCGACCGGCTGAGCGCCTGTACACTCGTTTCGTGGGTTGACTTAGGTATAC
646 CGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTC----G-TG-----GGT-T--
**** *
16969160 AGAGTTCATTCCCAGTCTAAGCATAC-AGAGTTCATTCCCAGTCTAAGATCGGGTTGGGCCGAGG
698 AGAG--CA-T-CCAG--T--GCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
* * * * *
16969224 GTTGTGGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTT-GACTGGGACACC
754 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACC
* * ** *
16969288 GTCACCGGAGCATCACCGGAGAACCTGACCAACGGCATTAGGGTTCCGGTGA
818 ATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTAGGGTTCCGGCGA
*
16969340 TCGGGGGGACGGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATT
1 T------G-CGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
16969405 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACA
59 GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
16969470 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACGTTTTTCAAATGGTCACAAAAT
124 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
16969535 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAGTACAAGGATCACGT
189 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * ** * *
16969600 ATACCAAGTTTGGGGCCAAAAGTCCTTCTGAAAAAATTTTAAAAAATCCCGAACAGTAAAAAGTT
254 CTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACGGCAAAAAGTT
* * *
16969665 TCAACAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
319 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
16969730 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
384 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * * *
16969795 AACCCACCTTCCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCGCTGGCCGGCGTAGTGCCT
449 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G--T
* * *
16969860 GCCCACCCGCCCGCCCGCTCGTTTCTTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAA
510 GCCCACCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
16969925 GGTCAGACCG---GA----T-C---A-AAAGTTATGGTAGCACACAGAGGGGGACTCG-GTCGAT
575 GATCAGACCGACCGAGGGTTGCGGTAGCAAG--ATCGCAGCACACAGAGGGGGACCCGACT-GAT
* *
16969977 CCCCGGCTTGCGCATCTCGCCCCTCTGGCCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGAC
637 CCCC-GCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTC----G-TG--
* * * *
16970042 ATAGGAATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACC
694 ---GG-TTA--GAG--CA-T-CCAG--T--GCATACGAAGTTCATTCCCAGTCTAAGATCGGACC
* * * **
16970107 AGACCGAGGGTTACGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACC
745 AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * ** * * * * * *
16970172 GGGGCACCATTGCCGAAGCATCGTCGGAGAACCTGAACAGTGGCATTGGGGTTTCGACGA
810 GGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTAGGGTTCCGGCGA
* * * *
16970232 TCGGGGGGGCCGGGCGGTGTGCTCACACGATGTGCGATGGGTGCTGGTACATGGCCCTTATATTG
1 T---GCGGG--GGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
16970297 GCCCCCTATCCCTCATCAAACCTCAAGAACCCACACCCCATTAAAGAGCATTTGAGATTTTACAG
60 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * *
16970362 GTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATTGGGACACATTTTTCAAATGGTCACAAAATC
125 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* ***
16970427 TTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCTTTTC
190 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * * *
16970492 TACGAAGTTTGGGGCCAAAACTGCTTCGAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
255 TACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACGGCAAAAAGTTT
* *
16970557 CAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
320 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * *
16970622 CCATTGTTTGAATTTACAAGCCATAAAAATTGCATTGGCATGCAGAAATATGAAGATGTTCCTAA
385 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* *
16970687 ACCCACCTACCACCCTATCGATTCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCA
450 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCA
* * * *
16970752 CCCGCCCACCTGCCCCCTTGCTAGTTTCATCGGTTGGCGTAGGCATATGGAGTTCATTCCCAGTC
515 CCCG--C-CC-G--CCC--GCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
16970817 TAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-TC
572 TAAGATCAGACC-GACCGAGGGTTGCGGTAGCAAGATCG-CAGCACACAGAGGGGGACCCGACT-
* * * *
16970881 GATCCCTGGTTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACTCTCGTTTCGTGGGTT
634 GATCCC-CGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGT-GG--
* *
16970946 GACTTACGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAATTCATTCCCAGTCTATGATCGG
695 G---T-----TA--GAG--CA-T-CCAG--T--GCATACGAAGTTCATTCCCAGTCTAAGATCGG
* * * * *
16971011 ACCAGACTGAAGGTTGCGGCAGCACATGTTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTC
742 ACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * ** * **
16971076 GTCGGGCCACCATCGCCGGAGCGTCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCGATGA
807 GTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTAGGGTTCCGGCGA
* * *
16971139 TTAGGGGGCCAAGGGGGTGTGCGCACATGATTTGCGATGGGTGCTGTTACTTGGCCCTTATATT-
1 -T-GCGGG----GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
16971203 GACCCCTATCCCTCAT-AACCCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
60 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * *
16971267 GTTTGCTGCAAGTAGCCAATAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATC
125 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
16971332 TTGTACACATCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGCATCACGTC
190 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* *
16971397 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAA-GCGCAAAAAGTT
255 TACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACG-GCAAAAAGTT
* * * *
16971461 TCAAAAATCATGAAAAACAGAAAACGAGTGGTCTTGCCATGAAACTTCATGTGCAGGCTTAAGGG
319 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* ** *
16971526 ACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCATGCAGAAATATGAAGACATGCCCA
384 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * * * *
16971591 AACCCACCGACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCAGACCAACGTAGTG---
449 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
* * * * * * *
16971653 -CCCGCCCGCCCGCTAGTTTCGTCGGTCGGCATAGGCATATGGAGTTCATTCCCAGTCTATGATC
514 ACCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
16971717 AGACCGAACAGAGGGTTGTGGTAGCAAGATCGACAGCACATAGAGGGGGACCCGACCGATCCCCG
579 AGACCG-ACCGAGGGTTGCGGTAGCAAGATCG-CAGCACACAGAGGGGGACCCGACTGATCCCC-
* * * * * * * *
16971782 GCTTGTGCATCCCGACCCTTTGGCCGGCCGAGCTCCTGTACGCTCGTTTCGTGGGTTGACTTAGG
641 GCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGT-GG--G---T---
* * *
16971847 CATACGGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
697 --TA--GAG--CA-T-CCAG--T--GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* * * * * * *
16971912 GAGGGTTGTGGCCGTACATGCTGGGCTCAGGCATGTGCTGGTGCTGTATTTTTCTTTGTCGGGGC
750 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * ** ** * * * *
16971977 ACCATCGTCGAAGCATCGTCAAAGAACTTGACCGGTGGCATT-GGGATTTCGGTGA
815 ACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTAGGG-TTCCGGCGA
* *
16972032 TTGGGGGGGCCGGAGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
1 -T---GCGG--GG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
16972097 GGCCCCCTATCCCTCATTAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACA
59 GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
16972162 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
124 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
16972227 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAAGACAAGGATCATG
189 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACG
** *
16972292 TCTACCAA--TTGGCACCAAAACGCCTTCCAAAAAAATTTTAAAAAATCCCGAACGGCAAAAAGT
253 TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACGGCAAAAAGT
* * * * *
16972355 TTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATTAAACTTCATGTGAAGGCTTACGG
318 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * ** *
16972420 GACCATTGTATGAATTTACAACCCATAAAAATGGCATTGCCACACTGAAATATGAAGATGTGCCT
383 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * ** * *
16972485 AAACCCACCTACCACCCTATTGATCCAC-GCTTGCGCATCCTGTCTCTCTGATCGGCATAGTGCC
448 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
*
16972549 CACCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
513 CACCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * * *
16972614 CAGAGCGGACCAAGGGTTACGGTAGCAAGATCGGTAGCACGCAGATGGGGACCGGACTAAT----
578 CAGA-CCGACCGAGGGTTGCGGTAGCAAGATC-GCAGCACACAGAGGGGGACCCGACTGATCCCC
* * ** * ** *
16972675 TC-T-CGTATCCCGTTCCTCTGGCCCGACTGAGCACCTACACACTCGTTTCGTGGGTTA-A-C-T
641 GCTTGCGCATCCCGCCCCTCTGG-CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTAGAGCAT
* * * * *
16972735 -TAG-GCATGCGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCA
705 CCAGTGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
16972794 GGATCGGTAA
Statistics
Matches: 4456, Mismatches: 573, Indels: 363
0.83 0.11 0.07
Matches are distributed among these distances:
854 41 0.01
855 2 0.00
858 1 0.00
859 3 0.00
860 4 0.00
864 19 0.00
865 529 0.12
866 51 0.01
867 1 0.00
868 1 0.00
869 1 0.00
871 3 0.00
873 2 0.00
874 70 0.02
875 132 0.03
876 50 0.01
877 210 0.05
878 26 0.01
879 5 0.00
880 86 0.02
881 74 0.02
882 9 0.00
884 3 0.00
885 2 0.00
886 13 0.00
887 13 0.00
888 27 0.01
889 482 0.11
890 27 0.01
891 484 0.11
892 239 0.05
893 382 0.09
894 76 0.02
895 259 0.06
896 149 0.03
897 27 0.01
898 114 0.03
899 31 0.01
900 6 0.00
901 74 0.02
902 15 0.00
903 13 0.00
904 5 0.00
905 393 0.09
906 23 0.01
907 273 0.06
908 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (869 bp):
TGCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACGGCAAAAAGTTTCAAAAA
TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCC
CGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA
CCGAGGGTTGCGGTAGCAAGATCGCAGCACACAGAGGGGGACCCGACTGATCCCCGCTTGCGCAT
CCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTAGAGCATCCAGTGCATAC
GAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGA
CCGGCGGCATTAGGGTTCCGGCGA
Found at i:16969185 original size:26 final size:26
Alignment explanation
Indices: 16969156--16969206 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
16969146 TGACTTAGGT
16969156 ATACAGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
16969182 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
16969207 ATCGGGTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:16970992 original size:26 final size:26
Alignment explanation
Indices: 16970953--16971003 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16970943 GTTGACTTAC
* *
16970953 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
16970979 GCATACGAAATTCATTCCCAGTCTA
1 GCATACGAAATTCATTCCCAGTCTA
16971004 TGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:16971875 original size:26 final size:26
Alignment explanation
Indices: 16971846--16971898 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16971836 GTTGACTTAG
*
16971846 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
16971872 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
16971898 G
1 G
16971899 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:16972920 original size:159 final size:153
Alignment explanation
Indices: 16972561--16972923 Score: 424
Period size: 153 Copynumber: 2.3 Consensus size: 153
16972551 CCCGCCCGCC
* ** * *
16972561 CGCTCGTTTCATCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGAGCGGACCA
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCA
* * * * **
16972626 AGGGTTACGGTAGCAAGATCGGTAGCACGCAGATGGGGACCGGACTAATTCTCGTATCCCGTTCC
66 AGGGTTACGGCAGCAAGATCGGTAACACGCAGAGGGGGACCGGACTAATTCTCGCATCCCGCCCC
* *
16972691 TCTGGCCCGACTGAGCACCTACA
131 TCTGGCCAGACTGAGCACCCACA
* * * * * *
16972714 CACTCGTTTCGTGGGTTAACTTAGGCATGCGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCA
** * *
16972779 AGGGTTGTGGCAGCAGGATCGGTAACACGCAGAGGGGGACCTGGAC-GATCCCTGGCTTGCGCAT
66 AGGGTTACGGCAGCAAGATCGGTAACACGCAGAGGGGGACC-GGACTAAT---T--C-T-CGCAT
16972843 CCCGCCCCTCTGG-CAGACTGAGCACCCACA
123 CCCGCCCCTCTGGCCAGACTGAGCACCCACA
*
16972873 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
16972924 CATACGGAGT
Statistics
Matches: 175, Mismatches: 27, Indels: 10
0.83 0.13 0.05
Matches are distributed among these distances:
153 91 0.52
154 4 0.02
156 1 0.01
158 1 0.01
159 63 0.36
160 15 0.09
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (153 bp):
CGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCA
AGGGTTACGGCAGCAAGATCGGTAACACGCAGAGGGGGACCGGACTAATTCTCGCATCCCGCCCC
TCTGGCCAGACTGAGCACCCACA
Found at i:16972933 original size:26 final size:26
Alignment explanation
Indices: 16972897--16972949 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16972887 GTTGACTTAG
16972897 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16972923 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16972949 G
1 G
16972950 ATCGAACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16973832 original size:26 final size:26
Alignment explanation
Indices: 16973796--16973846 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16973786 GTTGACTTAG
*
16973796 GCATACGGAGTTCATTCCCTGTCTAT
1 GCATACGGAGTTCATTCCCAGTCTAT
*
16973822 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
16973847 AGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAT
Found at i:16974525 original size:900 final size:898
Alignment explanation
Indices: 16972733--16975619 Score: 4148
Period size: 900 Copynumber: 3.2 Consensus size: 898
16972723 CGTGGGTTAA
* * * * **
16972733 CTTAGGCATGCGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCAGGAT
* * * * * *
16972798 CGGTAACACGCAGAGGGGGACCTGGA-CGATCC-CTGGCTTGCGCATCCCGCCCCTCTGGCAGAC
66 CGGCAGCACGCAGAGGGGGACC-CGACCGATCCTC-GGCTTGCACATCCCGCCCCTCTGGCCGGC
*
16972861 TGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
129 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * *
16972926 TACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTGGTAGCACAAGCTGGGGTC
194 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTC
* *
16972991 GGGCATGTGTTGGTGCCATATTTTTCTTTGCCGGGGCACCATCGCCGA-AGCATCGTCGGAGAAC
259 GGGCATGTGTTGGTGCCGTATTTTTCTTTGCCGGGGCACCATCGTCGAGAGCATCGTCGGAGAAC
* * * *
16973055 TTGACCGGCGGCATTAGGGTTCCGATGATCGGGGGGGGCTAGGGGGTGTGCGCACATGATGTGCG
324 CTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGGC-AGGGGGTGTGCGCACATGATGTGTG
* * *
16973120 ATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTAATCAAACCTAGAGAACTCACAC
387 ATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACAC
* *
16973185 CACCTTAAAGAGCATTTGGGATTTT-TCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
452 CCCCTTAAAGAGCATTTGAGATTTTAT-AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
16973249 AGGACACTTTTTT-GAATGGCCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTG
516 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTG
* * *
16973313 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTT-TCGAAAA
580 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-AAAAA
* * * *
16973377 AATTTTAAAAAGTCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCT
644 AATTTTAAAAAGTCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
16973442 TGCCATGAAACGTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGT
709 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
16973507 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
774 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
16973572 GCATCCCATCTCT-TCGGTCGGCGTAATGCCCCCTGCCCGCCCGCTCATTTCGTCAGTTGG
839 GCATCCCATCTCTCT-GGTCGGCGTAGTGCCCCCCGCCCGCCCGCTCGTTTCGTCAGTTGG
* ** *
16973632 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGATAGTAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCAGGAT
* * * *
16973697 CGGTAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCACATCCTGCTCCTCTGGCCGGCTG
66 CGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCACATCCCGCCCCTCTGGCCGGCTG
* *
16973762 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTATGCATA
131 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* ** *
16973827 TGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGA
196 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGG
*
16973892 GCATGTGTTGGTGCCGTATTTTTCTTTGCCAGGGCACCATCGTCGGAGCAGCATCGTCGGAGAAC
261 GCATGTGTTGGTGCCGTATTTTTCTTTGCCGGGGCACCATCGTC-GAG-AGCATCGTCGGAGAAC
*
16973957 CTGACCGGTGGCATTGGGGTTCCG-CGATCGGGGGGGTCAGGGGGTGTGCGCACATGATGTGTGA
324 CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CAGGGGGTGTGCGCACATGATGTGTGA
* * *
16974021 TGGGTGGTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAGCCTTGAGAACTCACACC
388 TGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACC
* * *
16974086 CCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGCAGCTATTAAAGTGTTTGAAATGGG
453 CCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
16974151 GACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
518 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
*
16974216 ATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATT
583 ATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATT
* **
16974281 TTAAAAAGTCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
648 TTAAAAAGTCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
16974346 ATGAAACTTCACGTTAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
713 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** *
16974411 GCATGCAGAAATATGATGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTGCGCAT
778 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * ** *
16974475 CCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCATGCTCGTTTCGTCGGTTGG
843 CCCATCTCTCTGGTCGGCGTAGTGCCC-CCCGCCCGCCCGCTCGTTTCGTCAGTTGG
* * *** * * * *
16974532 CTTAGGCATATGGAGTTCATTCCCAGTCTAACATCAAACTGAACTGAGGGTTGCGGCAGCAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCAGGAT
* ** * * * * * *
16974597 CGACAGCTTGTAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCACCCCTATGGCCGGCTG
66 CGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCACATCCCGCCCCTCTGGCCGGCTG
* *
16974662 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGATTTCATTCCCAGTCTAAGCATA
131 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* *
16974727 CGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGG
196 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGG
* * ** *
16974792 GCATGTGTTGGTGCTGCATTTTTCTTCACCGGGGCATCATCGTCG-GAGCATCGTCGGAGAACCT
261 GCATGTGTTGGTGCCGTATTTTTCTTTGCCGGGGCACCATCGTCGAGAGCATCGTCGGAGAACCT
* * *
16974856 GACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGAGGGTGTGCGCACATGATGTGTGATT
326 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCAGG-GGGTGTGCGCACATGATGTGTGA-T
* * * * *
16974921 GCG-GCTGATACTTGG-CTCTTATATTGGCCGCCTATCCCTCATCAAACCTCGAAAACTCACACC
389 GGGTGCTGGTACTTGGCCT-TTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACC
* * *
16974984 CCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCGAGTAGCCATTAAAGTGTCTGAAATGGG
453 CCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
16975049 GACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
518 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* ** * *
16975114 ATGCCAAAAAAAATACAAGGACCATGTCTACCAAGTTTGGCACCAAAACTCCTTCCAAAAAGATT
583 ATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATT
* * * *
16975179 TTAAAAAATCACGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCC
648 TTAAAAAGTCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
16975244 ATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATTAAAATGGCATTG
713 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
16975309 ACACACCGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCAC-GCTTGCGCAT
778 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
16975373 CCCGTCTCTCTGGTCGGCATAGTGCCCATCCGCCCACCCGCTCGTTTTGTCAGTTGG
843 CCCATCTCTCTGGTCGGCGTAGTGCCC-CCCGCCCGCCCGCTCGTTTCGTCAGTTGG
** * *
16975430 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGAGTGGACCGAGGGTTACGGTAGCAAGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCAGGAT
* * * * *
16975495 CAGCAGCACCCAGATGGGGA-CCGACCGATCCTCGACTTGCTA-ATCCCGCTCCTCTGGCCGGCT
66 CGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGC-ACATCCCGCCCCTCTGGCCGGCT
* *
16975558 GAACACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
130 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
16975620 ATCAGACTGG
Statistics
Matches: 1767, Mismatches: 204, Indels: 36
0.88 0.10 0.02
Matches are distributed among these distances:
897 135 0.08
898 535 0.30
899 351 0.20
900 664 0.38
901 45 0.03
902 37 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCAGGAT
CGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCACATCCCGCCCCTCTGGCCGGCTG
AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGG
GCATGTGTTGGTGCCGTATTTTTCTTTGCCGGGGCACCATCGTCGAGAGCATCGTCGGAGAACCT
GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCAGGGGGTGTGCGCACATGATGTGTGATGG
GTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTA
AAAAGTCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
ATCTCTCTGGTCGGCGTAGTGCCCCCCGCCCGCCCGCTCGTTTCGTCAGTTGG
Found at i:16974727 original size:26 final size:26
Alignment explanation
Indices: 16974696--16974748 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16974686 GTTGACTTAG
*
16974696 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16974722 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16974748 G
1 G
16974749 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16975757 original size:159 final size:158
Alignment explanation
Indices: 16975425--16975777 Score: 467
Period size: 158 Copynumber: 2.2 Consensus size: 158
16975415 CGTTTTGTCA
* ** * *
16975425 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGAGTGGACCGAGGGTTACGGTAGC
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTACGGTAGC
* * * * * *
16975490 AAGATCAGCAGCACCCAGATGGGGACCGACCGATCCTCGACTTGCTAATCCCGCTCCTCTGGCCG
66 AAGATCAGCAACACCCAAAGGGGGACCGACCGATCCTAGACTTGCGAATCCCGCCCCTCTGGCCG
* *
16975555 GCTGAACACCCGCACGCTCGTTTCGTGG
131 ACTGAACACCCGCACGCTCGTTTCATGG
* ** *
16975583 GTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGTGGTAGT
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTACGGTAGC
* ** * *
16975648 AGGATCAGCAACACGTAAAGGGGGACCCGATCGATCCCTAG-CTTGCGGATCCCGCCCCTCTGGC
66 AAGATCAGCAACACCCAAAGGGGGA-CCGACCGAT-CCTAGACTTGCGAATCCCGCCCCTCTGGC
*
16975712 CGACTGAGCACCCGCACGCTCGTTTCATGG
129 CGACTGAACACCCGCACGCTCGTTTCATGG
16975742 GTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAG
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
16975778 CATATGAAGT
Statistics
Matches: 169, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
158 85 0.50
159 80 0.47
160 4 0.02
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (158 bp):
GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTACGGTAGC
AAGATCAGCAACACCCAAAGGGGGACCGACCGATCCTAGACTTGCGAATCCCGCCCCTCTGGCCG
ACTGAACACCCGCACGCTCGTTTCATGG
Found at i:16975781 original size:25 final size:26
Alignment explanation
Indices: 16975752--16975803 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
16975742 GTTGACTTAG
*
16975752 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
16975777 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16975803 G
1 G
16975804 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16978708 original size:26 final size:26
Alignment explanation
Indices: 16978679--16978731 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16978669 CCGGTCTGAT
*
16978679 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16978705 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16978731 C
1 C
16978732 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16980459 original size:26 final size:26
Alignment explanation
Indices: 16980430--16980482 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16980420 CTGGTCCGAT
16980430 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16980456 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16980482 C
1 C
16980483 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16980821 original size:898 final size:890
Alignment explanation
Indices: 16979087--16981531 Score: 3304
Period size: 898 Copynumber: 2.7 Consensus size: 890
16979077 TTCTATGGCG
* * *
16979087 GTTCGAGATTTTTTAAAATTTTTT-TGAAAAGAGTTTTGGCACCAAACTTGGTAAACGTGATCCT
1 GTTCGAGATTTTTTAAAATTTTTTCGGAAAGGAGTTTTGGC-CCAAACTTGGTAGACGTGATCCT
*
16979151 TGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
65 TGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * * *
16979216 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATGT
130 CATTTGAAAAAAGTGT-CCCAATTCA-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * *
16979281 CAAATGCTCTCTAAAGGGGGTGTGAGTTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAGA
193 CAAATGCTCT-TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
** * * * *
16979346 CCAAGTACCAGTGCCAATCGCACATCATGTGCGCTCACCCCCCGGCCCCCCGATTGCCGAAACCC
257 CCAAGTACCAGCACCCATCGCACATCATGCGCGCACACCCCCCGGCCCCCCGATTGTCGAAACCC
* ** *
16979411 CAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCAACGATGGTGCCCCGACGAAGAAAAATACGG
322 CAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATACGG
* * * * * * * *
16979476 CACCAACACATGCCCAAGCCCAGCATCTGCTGCCGCAACCCTCGGTCTGATCTGATCTTAGGCTG
387 CACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGGTCCGATCTTAGACTG
* * * * * *
16979541 AGAATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTTTGCCTGAGTCAACCCACAAAACGA
452 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGA
* * *** *
16979606 GCGTGCGGGTGCTTAGCCAGCCAGAGGGGCGAGATGCGCAAGGAAGGGATCCGTCGGGTCCCCCT
517 GCGTGCGGGTGCTTAGCGA-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT-CCCCT
* * * * * * *
16979671 CTACGTGCTACCGATCCTACTGCCACAACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACT
580 CTGCGTGCTGCTGATCCT-GTGCCACAACCCTTGGT-CGATCCGATCTTAGACTGGGAATGAACT
* * * * * * *
16979736 CCGTATGCCTAAGCCAACCGACGCAGCGAGCGGGCGGGCGGCTGGCACTAAGTCGGCCAGAGAGG
643 CCGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGGCGGCGGGCACTAAGCCGGCCAGAGAGA
* *
16979801 CAGGATAAGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTGC
708 CAGGATAAGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
*
16979866 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTT
773 GTGCCAATGCCATTTTTATGGCTTGGAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTT
**
16979931 TCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACA
838 TCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACA
*
16979984 GTTCGAGATTTTTTAAAATTTTTTCGGAAAGGATTTTTGGCCCAAAGC-TGGTAGACGTGATCCT
1 GTTCGAGATTTTTTAAAATTTTTTCGGAAAGGAGTTTTGGCCCAAA-CTTGGTAGACGTGATCCT
* * *
16980048 TGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAACAACCCGAATTGTACAAGATTTTGTGAC
65 TGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
16980113 CATTTGAAAAAAAGTGTCCGCAATTCAATCACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
130 CATTTG-AAAAAAGTGTCC-CAATTCAA-CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
16980178 TCAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
192 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA-G
* * *
16980243 GCCAAGTACCAGCACCCATCACACATCATACGCGCACA-CCCCCGGCCCCCTCAATTGTCGAAAC
256 GCCAAGTACCAGCACCCATCGCACATCATGCGCGCACACCCCCCGGCCCCC-CGATTGTCGAAAC
* * * *
16980307 CCCAATGCCGCCGGTCAGGTTCTCCAATGATGCTCTAGCGGTGGTGCCCCAACGAAGAAAAATAC
320 CCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATAC
* * * **
16980372 GACACCAGCACAAGCCCGAGCCCAGCATGTGCTATCGTAACCCTCAATCTGGTCCGATCTTAGAC
385 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGGTCCGATCTTAGAC
16980437 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT
450 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT
* *
16980502 GAGCGTGCGGGCGCTTAGCTGACCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCC
515 GAGCGTGCGGGTGCTTAGC-GACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC
* * *
16980567 TTCTGCGTGCTGCTGATCCTGTGCCGCAACCTTTGGCTCGATCCGATCTTAAACTGGGAATGAAC
579 -TCTGCGTGCTGCTGATCCTGTGCCACAACCCTTGG-TCGATCCGATCTTAGACTGGGAATGAAC
* * *
16980632 TTCGTATGCCTAAGCCAACCGA-GAAAACGAGCAGACGGGTTGGCGGGCACTACGCCGGCCAGAG
642 TCCGTATGCCTAAGCCAACCGACG-AAACGAGCAGACGGG-CGGCGGGCACTAAGCCGGCCAGAG
* ** * *
16980696 AGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATGTTCATATTTC
705 AGACAGGATAAGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
16980761 TACGTGCCAATGCCATTTTTATGGCTTGGAAATTCATACAATGGTCCCTTAAGCCTTCACATGAA
770 TACGTGCCAATGCCATTTTTATGGCTTGGAAATTCATACAATGGTCCCTTAAGCCTTCACATGAA
* * * *
16980826 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCG
835 GTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACA
* *
16980882 GTTCGGGATTTTTTAAAATTTTTTCGG-AAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
1 GTTCGAGATTTTTTAAAATTTTTTCGGAAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCT
* * * * * * *
16980946 TATATTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAAATCAAAGTGTACATGA-TTTGTGAC
65 TGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * *
16981010 CATTTCAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
130 CATTTGAAAAAAGTGT-CCCAATTCA-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * * * *
16981075 CAAACGCTCATTATGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATATGGGGCCAATATAAAGG
193 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT-AAGG
* * * * *
16981140 CCAAGCACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCGGTCCCCCCGCTCGTCGGAA
257 CCAAGTACCAGCACCCATCGCACATCA--TGCGCGCACACCCCCCGG-CCCCCCGATTGTCGAAA
* * * * * ** * * *
16981205 CCCTAATGCCACCGATCAGGTTCTCCGATAATGCTCCGGTAATGGTGCCCCGAGGAAGAACAATG
319 CCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATA
16981270 CGGCACCAGCA-AGTGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGGTCCGATCTTAG
384 CGGCACCAGCACA-TGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGGTCCGATCTTAG
* *
16981334 ACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
448 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * * * *
16981399 ATGAGTGTACGGGTGCTCAGCCGGCCAAAAGGGCGGGATGCGCAACCCGGGGATCGGTCGGGTCC
513 ATGAGCGTGCGGGTGCTTAG-CGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCC
* * *
16981464 TCCTCTGCGTGCTG-TCGATCCTGCTGCCACAACCCTTGGTTTGGTCCAATCTTAGACTGGGAAT
577 -CCTCTGCGTGCTGCT-GATCCTG-TGCCACAACCCTTGG-TCGATCCGATCTTAGACTGGGAAT
16981528 GAAC
638 GAAC
16981532 ACCATATGGT
Statistics
Matches: 1361, Mismatches: 161, Indels: 49
0.87 0.10 0.03
Matches are distributed among these distances:
896 134 0.10
897 276 0.20
898 647 0.48
899 259 0.19
900 45 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
GTTCGAGATTTTTTAAAATTTTTTCGGAAAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTT
GTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
ATTTGAAAAAAGTGTCCCAATTCAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCAA
GTACCAGCACCCATCGCACATCATGCGCGCACACCCCCCGGCCCCCCGATTGTCGAAACCCCAAT
GCCGCCGGTCAGGTTCTCCGATGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATACGGCACC
AGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAA
TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGT
GCGGGTGCTTAGCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCTCTGCGT
GCTGCTGATCCTGTGCCACAACCCTTGGTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
CTAAGCCAACCGACGAAACGAGCAGACGGGCGGCGGGCACTAAGCCGGCCAGAGAGACAGGATAA
GCAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
GCCATTTTTATGGCTTGGAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCA
AGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACA
Found at i:16981365 original size:26 final size:26
Alignment explanation
Indices: 16981329--16981381 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16981319 CTGGTCCGAT
16981329 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16981355 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16981381 C
1 C
16981382 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16982912 original size:26 final size:26
Alignment explanation
Indices: 16982876--16982928 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16982866 GTTAACTTAC
*
16982876 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16982902 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16982928 G
1 G
16982929 ATTGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16983784 original size:26 final size:25
Alignment explanation
Indices: 16983754--16983805 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
16983744 TTTGACTTAG
*
16983754 GCATACAGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATT-CCAGTCTAA
*
16983780 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
16983805 G
1 G
16983806 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:16987155 original size:26 final size:26
Alignment explanation
Indices: 16987119--16987171 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16987109 GTTGACTTAG
16987119 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
16987145 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16987171 G
1 G
16987172 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16987986 original size:26 final size:26
Alignment explanation
Indices: 16987950--16988002 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16987940 CTAGTATTAG
16987950 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16987976 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16988002 G
1 G
16988003 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16989713 original size:904 final size:903
Alignment explanation
Indices: 16987060--16999129 Score: 14669
Period size: 904 Copynumber: 13.6 Consensus size: 903
16987050 CCTCGACTTA
* * * * *
16987060 CGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGTTTGATTCGTGGGTTGACTTAGGCATAC
1 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * *
16987125 AGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGACCA-GATCGAGG
66 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGG
* * *
16987189 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCG-CTGGGGAACC
131 GTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACC
* * * **
16987253 ATC-CTCGGAGCAAT-GCCGGAGAACCTGACCGACGACATTGCGGTTCTGGCGATCGGGGGGGTT
195 ATCGC-C-GAGC-ATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC
** *
16987316 GAAGGGTGTGCACACATGATGT-CTGATGGGTGCTGGTGTACTTGGCCCTTATATTGGCCCCCTA
257 GGGGGGTGTGCGCACATGATGTGC-GATGGGTGCT-G-GTACTTGGCCCTTATATTGGCCCCCTA
16987380 TCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTAACAGGTTTGCT
319 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT-ACAGGTTTGCT
*
16987444 GCCAATAG-CATTAAAGTGTCTGAAATGGGGA-ACTTTTTTCAAATGGTCACAAAATCTTGTACA
383 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * ** *
16987507 CTTTGAGTTTTTAGCTGAA-TTTTTTATGCATGCC-AACCAAATACCAGGATCACG--T----AG
448 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* * *
16987564 TTTGGGG-CAAAACTCCTTCCG-AAAAA-TTTAACAAATCCCGAACCGTAAAAAGTTT-GAAAAT
513 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
* * * * *
16987625 CGTG-GAAATAGAAAATGAGTCGTC-TGCCATGAAGCTTCACGTGAAGGCTTAAGGGACCAATCG
578 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC-ATTG
* *
16987688 TATGTATTTACAAGCC-TAAAAATGGCATT-GCA--CACGAAATATG-AGATGTGCCT-AA-TCA
642 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA-GAAATATGAAGATGTGCCTAAACCCA
* * * *
16987746 -C-A-CA-CCT-T-GATCCA-GGCTTG-GCAT-CCATCTCT-T-GCC-GCATAGTGCCAG-CCTC
706 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* ** * * *
16987798 TCGTTTCGCCCGCTCATTTCGTC-G-T-GCTTA-G-ATGAC-GA--TCTTTCCCA-TCT-ATAT-
771 CCG-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT-ACGGAGTTCATTCCCAGTCTAAGATC
** * * * ** *
16987852 -G--GTGA-CGA---TT-TGGCAGCA-GATC-G-A-CTACG-A-A-CGGGAGCC-TTCGATCCGC
834 AGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGC-ACGCAGAGGGGGACCCGACCGATCCCC
16987901 GGACTT-
898 GG-CTTG
* * * * *
16987907 CGCA--CCG--ACTC-GGTCAGTCTGAGC-CCC-TA----CG-TTC-T-AG-T-A-TTAGGCATA
1 CGCATCCCGCCCCTCTGG-CCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
*
16987955 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA-GACCGAG
65 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAG
* * * * *
16988019 GGTTGCGACAGCACATGCTGGGGTCGGGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACC
130 GGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* * * * * * *
16988084 ATCACTGGAGCATCACTGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGAGGGGGGCCA
195 ATCGC-CGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCG-GGGGGGCCG
*
16988149 GAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
258 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * * * * *
16988214 TCATCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTCAGATTTTAGACGTTTACTACCAG
323 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
16988279 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
388 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* **
16988344 AGTTTTTAGC-----TTTTTTGTGCTTGCCAAAAAAAATACAAGGATCACGTCTATAAAGTTTGG
453 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * **
16988404 GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATTGTGA
518 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGA
* * *
16988469 AAAATAGAAAATGAATCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAA
583 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * *
16988534 TTTACAAGCCATAAAAAAGGCATTGGCACGTAGAAATATGAAGATGTGGCTAAACCCACCTACCA
648 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
*** * * * * * *
16988599 CCCTATCGATCCATTACTTGCGCATCCGGTCTCTCTGACCGACGTAGTGCCCGCCCACCCGTCTG
713 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG
* * * *
16988664 CCCGCTCGTTTCGTTGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTTTAAGATCAGACCAGAT
778 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * *
16988729 CGAGGGTTGCAGCAGCAGGATTGGCAGCATGTAGAAGGGGACCCGACCGATCCCCGGCTTG
843 CGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * *
16988790 CGCATCCCGCCCTTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGATTGACTTAGGCATAC
1 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * *
16988855 GGAGTTAATTCCCAGTCTAAGCACACGAAGTTCATTCCCAATCTAAGATCAGA-CAGGACCGAGG
66 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGG
* *
16988919 GTTTCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCA
131 GTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * * * *
16988984 TCGTCAGAGCATTGTCAGAGAACCTGACCGATGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGG
196 TCG-CCGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGG
* *
16989049 GGGTTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCT
260 GGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
16989114 CATGAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
324 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * *
16989179 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACATTTCAA
389 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
*
16989244 GTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGG
454 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * ** *
16989309 GCCAAAACTCCTTCTGAAAAAAATTTAAAAAATCCCGAACCGCAAAATGTTTTGAAAATCATGAG
519 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAA
* *
16989374 AAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAAT
584 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * *
16989439 TTACAAGCCATCAAAATGGTATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
649 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * *
16989504 CCTATCGTTCCACGGCTTGCACATCCCGTCTCTCCGGTCGGCGTAGTGCCTGCCCGCCCGCCCGC
714 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGC
* * * *
16989569 CCGCTTGTTTCGTCGGTTGGCTTAGCCATACGGAGTTCATCCCCAGTCTAAGATCAGACCAGATC
779 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
* *
16989634 GAGGGTTACAGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
844 GAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * ** *
16989694 CACATCCCGCCCCTCTGGCCGGTTGAGCACCCATACGCTCGTTTCATGGGTTGACTTAGGCATAC
1 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * ** * *
16989759 GGAGTTCTTTCCCAGTCTAGGCATACAGAGTTCATTCTCAGTCTAAGATTGGACCA-GATCGACG
66 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGG
* ** * * * ** *
16989823 GTTGCAACAGCACATGTTGGG-TCGGGCATGTGTTGGTGTCGCATTTTTCTTCACCGGCGCACCA
131 GTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* ** * *
16989887 TCGCCAGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCTGGCGATCGGGGGGGCTGGG
196 TCGCC-GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGG
* *
16989952 GGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTC
260 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * *
16990017 GTCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGATGCCAGTA
325 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
16990082 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCAAG
390 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
16990147 TTTTTAGCTGAATTTTTTT-TGCATGGCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGT
455 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
** * * * *
16990211 TGAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAA
520 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAA
* *
16990276 AATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
585 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*
16990341 TACAAGCCATAAAAATGACATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
650 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * *
16990406 CTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGG-TGGCGTAGTGCCCGCCCGCCCACCCGCT
715 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCC
* * * ** *
16990470 CGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCTGTCTAAGATTGGACCAGACCA
780 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * ** * * * *
16990535 AGGTTTGCGATAGCAGGATCGGCAGCATGCAAAGGGGGACTCGATCGATCCCCGGCTTG
845 AGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * * * * * *
16990594 CACATCCCGCCCCTCTGGCCGACTGAGTACCCGTACGCTCATTTCGTTGGTTGACTTAGCCATAC
1 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * *
16990659 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGACCA-GATCGAGG
66 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGG
* *
16990723 GTTACGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
131 GTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * * * **
16990788 T-------CA---CCGGAGAACCTAATCGGCGGCAATGGGGTTCCGACGATCGAAGGGGCCGGGG
196 TCGCCGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGG
*
16990843 GGTGT-CTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTC
261 GGTGTGC-GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
16990907 ATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTA
325 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * * *
16990972 GCCACTAAAGCGTCTGAAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACATTTCGAG
390 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
16991037 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTTTACCATGTTTGGGG
455 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * ** * *
16991102 CCAAAACTCCTTCCGAATAAATTTTCAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTAAAA
520 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAA
* * *
16991167 AATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATA
585 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* ** * * * **
16991232 TACAAGCTATAAAAATGGCATTGGCGCGTAAAAATAAGAAGATGCACCTAAACCCACCTACCACC
650 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * ** *
16991297 CTATCGATCTACGGCTTGTGCATCCCGTCTCTCTGGCCGATGTAGT----GCCTGCCCGCCCGCC
715 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCC
* * * * * *
16991358 CGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTATAAGATCATACTAGAGCG
780 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * * ** * * *
16991423 AGGGTTGCCGTAGCACAATCGACAGCACGCAGAGGGGTACCCGACCGATCCCCGACTTG
845 AGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * * *
16991482 CGCATCCC-CCCCTTTGGCTGGCTGAGCACCGGCATGCTCGTTTCGTGGGTTGACTTAGGCATAC
1 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * *
16991546 GAAATTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTGTAAGAT-----C-GGACTGAGG
66 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGG
* * * * * * * *
16991605 GTTGCGACAGCACATGCTGGGCTCGAGCATCTGTTGGTTCCACATTTTTCTTCG-CTAGGGCACC
131 GTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACC
* *
16991669 ATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATC-GGGGGGCCGG
195 ATCGCC-GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-G
16991733 GGTGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
258 GG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
16991798 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTCCTGCCA
322 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
16991863 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
387 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
16991928 GAGTTTTTAGCTTAATTTTTTTGTGCATGTCAACAAAAATAAAAGGATCACGTCTACCAAGTTTG
452 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
** *
16991993 GTTCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAAT-AGT
517 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA-T
*
16992057 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATG
581 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * * * * *
16992122 AATTTACAAGCCATAAAAAGGGCATGGGCACGCAGAAATATGAAGATATGACTAAACCCACTTAC
646 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * *
16992187 CACCCAATCGATCCAC-GCTTGCGCATCCCATTTCTCTGGCCGGCGTAGTACCCGCCCACCCGCC
711 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
* * * *
16992251 CGCCTGCTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAG
776 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
** * * * *
16992316 ACCGAGGGTTGTGGCAGCTGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTCG
841 ACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * *
16992379 CGCATCCTGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATAC
1 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * ** **
16992444 AGAGTTCATTCCAAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGA-TTGGACCGAGG
66 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGG
* *
16992508 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
131 GTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * *
16992573 TCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTAGGGTTCCGGTGATCGGGGGGGCCGGG
196 TCG-CCGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GG
* * *
16992638 GTGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCTTATCCC
259 G-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
16992703 TCATCAAACCTCGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAG
323 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
16992768 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
388 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * *
16992833 AGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATAAAAGAATCACGTCTACCAAGTTTGT
453 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * * *
16992898 TGCCAAAACTCCCTT-CAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTG
518 GGCCAAAACT-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
* *
16992962 AAAAATGGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGA
582 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *** *
16993027 ATTTAGAAGCCATAAAAATGGCATTGGCACATAGAAATATGAGGATGTGCCTAAACCCACCTACC
647 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
16993092 ACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCTGCCCGCCC
712 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC
* * ** * *
16993153 ACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTTGTTCCCAGTCTAGGATCAGACCGGA
777 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* ** * * * *
16993218 CCGAGGGTTATGATAGCAGGATCGGTAGGACACA-AAGGGGACCCGACCGATCCCCGGCTTG
842 CCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
*
16993279 CGCATCCCGCCCCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
1 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
16993344 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACCGACG
66 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGG
** * * * * *
16993408 GTTGTGGCAACACATGCTGGGCTTGGGCACGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCA
131 GTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * **
16993473 TCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCTAGCGATCGGGGGGGCCGGG
196 TCGCC-GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GG
* *
16993538 GTGGGTTGTGC-CACAT-ATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCACCCTATCC
259 G-GGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
16993601 CTCATCAAGCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
322 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
16993666 GTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTC
387 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
** * *
16993731 GAGTTTTTAGCTGAATTTTTTTGTGCACACCAACAAAAATACAAGGATCACGACTACCAAGTTTG
452 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
** * * * * **
16993796 GAACGAAAACTCCTTCCGAAAAAATTTTAACAAATCCC-AACCGCAAAAAGTTTTAAAATTTGTG
517 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
*
16993860 AAAAAGAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
582 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * *
16993925 ATTTACAAGCCATAAAAATGGCATTAGCATACAGAAATATCAAGATGTACCTAAACCCACCTACC
647 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
16993990 ACCCTATCGATCCACGGCTTCCGCATCCCATATCTCTGGCTC-GCGTAGTGCCCGCCCGCCCGTC
712 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC-CGGCGTAGTGCCCGCCCGCCCGCC
* * * *
16994054 CGCCAGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGA-CTG
776 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * ** * *
16994118 AACCGAGGGTTACGGCAGCAAGATTGGTAGCATGCAGAGGGGGACTTGTCCGATCCCC-GCTTA
841 -ACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * * * *
16994181 CGCATCCCGCCCCTCTGGTCGGCTGAGCGCCTGTACGCTCGTTTCGTGAGTTGAC-T-----TA-
1 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* *
16994239 --AG--------CA---T-A-C--A--GAGTTCATTCCCAATCTAAGATCAGACCA-GACCAAGG
66 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGG
*
16994284 GTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG-CTGGGG-ACC
131 GTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACC
* ** * * *
16994347 ATCGTCGTATG-ATCGCCGGAGAACCTGACCGGTGACATTAGGGTTCCGGTGATC------G--G
195 ATCGCCG-A-GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCG
* *
16994403 GGGGGTGTGCGCACATGATGTGCGATGGTTGCTGGTACTTGGGCCTTATATTGGCCCCCTATCCC
258 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
16994468 TCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAAATTTTACAAGTTTGCTGCCAG
323 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
16994533 TAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
388 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * *
16994598 AGTTTTTAGCTGAAGTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACGAAGTTTAG
453 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
* *
16994663 GGCCAAAATTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGA
518 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGA
* * * * *
16994728 GAAATAGAAAACGAGTCATTTTGCCGTGAAACTTCACGTGAAGGCTTAAGTGACCATTGTATGAA
583 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
*
16994793 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCA
648 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
16994858 CCCTATCGATCCACGGCTTGCACATCTCGTCTCTCTGGCCGACGTAGT------------GCACG
713 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG
* * **
16994911 --C-C-CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCACAATCTAAGATTGGACCAGAC
778 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * *
16994972 CAAGGGTTACGGTAGTAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTG
843 CGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * * * *
16995033 CGCATCCCGTCCCTCTAGCCGGCTCAGCACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATAC
1 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * *
16995098 GGAGTTCATTCCCAGTCTAAGTATACGGAGTTCATTCCCA-TGCTAAGATCA-AACTGGACCGAG
66 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT-CTAAGATCAGACCAGGACCGAG
* * *
16995161 GGTTACGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGG---C
130 GGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
** *
16995223 A----C---CATCGCCGGAGAACCTGACCGACGGCATTGGCATTCCAGCGATC-GGGGGGCCGAG
195 ATCGCCGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-G
* * * *
16995280 GGGGTGTACGTAAATGATGTGCGATGGGTGCTGGTACTTGCTGGTACTTGGCCCATATATT-GCC
259 GGGGTGTGCGCACATGATGTGCGA----TG--GG----TGCTGGTACTTGGCCCTTATATTGGCC
* * * *
16995344 CCCTATCCCTCATAAAACCTTGAGAACTCACGA-CCCCTTAAAAAGCATTTAAGATTTT--A---
314 CCCTATCCCTCATCAAACCTCGAGAACTCAC-ACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
16995403 -------C---AG-C--T--A-------AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
378 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
**
16995446 GTACACTTCGAGTTTTTAGCTG-GGTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
443 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* * *
16995510 CCAAGTTT-GGGCCAAAAATCCTTCCGAAAAAATTTT-AAAAATCTCGAACCGAAAAAAGTTTCA
508 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
*
16995573 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCC
573 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * *
16995638 ATTGTATGAAATTACAAGGCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCATAAAC
638 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
*
16995703 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-CC
703 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * *
16995767 CGCCCG-CCGCCCGCTTGTTCCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
768 CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * ** * * *
16995831 CGGACCGGACTGAGGGTTGTGGCA--A-GATCGACAGCACACAGAGGGGGACCCGATCGATCCCC
833 CAGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC
*
16995893 GACTAT-
898 GGCT-TG
* * * * * * *
16995899 CGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCATGCTCGTTTCATGGATTAACTTAGGCATAC
1 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * *
16995964 GGAGTTCATTCCCAATCTAAACATACGGAGTTCAATCCCAGTATAAGATCAGATC-GGACCGAGG
66 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGG
* * ** *
16996028 GTTGCGGCAGCACATGCTGGGATCGGGCATGTGCTGGCACCGTATTTTTCTTCGTCGGGGCACCA
131 GTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
** * * *
16996093 TCG-CGCAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGAGGACCGGG
196 TCGCCG-AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GG
** * *
16996157 GGGGTGTGCGCACATGATGTGCGATGCATGCTGGTAGTTGGCCCTTATATTGGCCCCCTATACCT
259 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
16996222 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
324 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
16996287 AGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAA
389 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
16996352 TTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTT-G
454 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT-TTGG
* * *
16996416 GGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAGAAAGTTTCAAAAATCATGA
518 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGA
* *
16996481 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAACGCTTAAGGGACCATTGTACGAA
583 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
16996546 TTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCAAAACCCACCTACCA
648 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * *
16996611 CCCTATCGATCCACAGCTTGCACAT-CCGTTCTCTCTGGCTGACGTAGTGCTCGCCCGCCAGCCC
713 CCCTATCGATCCACGGCTTGCGCATCCCG-TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC
* * * **
16996675 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCATTCTAAGATTGGACCAGA
777 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* ** * * * * * * * * * *
16996740 CCGAGGGTTGCCACAGTAGGATTGGTAGTACGCAAAGTGGGACTCGATCGATCCCTGACTTG
842 CCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * ** * * * **
16996802 CGCATCTCGCCCCTCTGGTCGATTGAGCGCCCGCACACTCATTTCAAGGGTTGACTTAGGCATAC
1 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * * * * *
16996867 GGAGTTCATTCCTAGTCTAAGCATGCAGAATTCATTCCCAGTCTAGGATCGGA-CTGGACTGAGG
66 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGG
* ** * * * * *
16996931 GTTACGGCAGCACATGCTAGGCTCAAGAATGTGCTGGTG-CGCATTTTTCTTTGTTGGGGTAGCA
131 GTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * **
16996995 TCACCAGAGCATCGTCGGAGAATCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGTTGGG
196 TCGCC-GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGG-CCGG
* *
16997060 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCTCCTATCCCT
259 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * *
16997125 CATAAAACCTCGACAACTCACACCCCCTTAAAGAGTATTTGAGATTCTACAGGTTTGCTGCCAGT
324 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
16997190 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
389 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * *
16997255 GTTTTTAGCTGAGTTTTTTTATGCATGCCAAAAAAAATACAAGGATCATGTCTATCAAGTTTGGG
454 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * * * ** **
16997320 TCCAAAAATACTTTCGAAAAAATTTTAAAAAATCCAGAACTGCAAAAAGTTTTGAAAATTGTGAA
519 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAA
* *
16997385 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGAGCATTGTATGAAT
584 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
16997450 TTACAAGCCGTAAAAATGGCATTGGTACAT--AGAAATATGAAGATGTGCCTAAACCCACCTACC
649 TTACAAGCCATAAAAATGGCATTGG--CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* ** * * **
16997513 ACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGATCGGCATAGTGCACGCCCATCCGCCC
712 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC
* * *
16997578 G-CCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTAATTCCCAGTCTTAAGATCAGATCAG
777 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC-TAAGATCAGACCAG
* * ** * * * * * *
16997642 ACCGGGGGTTCCGATAGTAGGATCGGTAGGATGCAAAGGGGGACCCGACCGATCCTCGGCTTG
841 ACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * * * * * *
16997705 CACATCCCGCCCCTCTGACAGGTTGAGCACCTGCACGCTCATTTCGTGGGTTGACTTAGGCATAA
1 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * *
16997770 GAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGGATCAGACC-GGACCGACG
66 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGG
* * * *
16997834 GTTACGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCATTGGGGCACCA
131 GTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * *
16997899 TCGCCGGAGCATCACCGGAGAACCTGACC-AGCGGCATTGGGGTTCTGGTGAT-TGGGGGGCCGG
196 TCGCC-GAGCATCGCCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGGCGATCGGGGGGGCC-G
* * *
16997962 GGTGGGTTGTGCACACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCTCCCTATC
258 GG-GGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
16998027 CCTCATCAAGCCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
321 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
16998092 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
386 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
** * **
16998157 CGAGTTTTTAGCTGAATTTTTTTGTGCACACCAACAAAAATACAAGGATCACAACTACCAAGTTT
451 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * *
16998222 GGGGCGAAAACTTCTTCCGAAAAAATTTTAACAAATCCC-AACTGTAAAAAGTTTCAAAAATCAT
516 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
16998286 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
581 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
**
16998351 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
646 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * *
16998416 CACCCTATCAATCCACGGCTTGCGCATCCCATATCTCTGGCCCGCGTAGTGCCCGCCCGCCCGTC
711 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
* *
16998481 TGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT-AGATCAGACC-G
776 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * *
16998544 AACTGAGGGTTACGGCAGCAAGATCGACAGCACGCAGAGGGGGACCTGACCGATCCCTGGCTTG
841 -ACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* *
16998608 CGCATCCCGCCCCTCTGGTCGGCTGAGCACCCGTACG--C---TC----GTT---TT--G--T--
1 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * *
16998655 -GAGTTGA----C--T-TAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCA-GACCAAGG
66 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGG
* * * * * ** *
16998711 GTTTCGACAGCACATGCTGGGCTGGGGCTTGTGCTGGTGCCACATTTTTCTTCACCGGGACACCA
131 GTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * *
16998776 TCGTCGTATG-ATCACCGGAGAACCTGACCGACGGCATTAGGGTTCCGGTGAT---------CGG
196 TCGCCG-A-GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGG
* *
16998831 GGGGTGTGCGCACATGATGTGCGAT-GGTGGCTGGTACTTGGGCCTTATATTGGCCCGCTATCCC
259 GGGGTGTGCGCACATGATGTGCGATGGGT-GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
16998895 TCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAG
323 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
16998960 TAGCCATTAAAGTGTCT-AGAATGGGGACACTTTTTGCAAATGGTCACAAAATCTTGTACACTTC
388 TAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * * * *
16999024 GAGTTTTTACCTGAATTTTTTTGTGCATGCCAATAAAAATACAAAGATCATGTCTATCAAGTTTA
452 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
* *
16999089 GGGCCAAAATTCCTTCC-AAAAAATTTT-AAAAATCCCAAACC
517 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
16999130 CACCTACCAC
Statistics
Matches: 9752, Mismatches: 1173, Indels: 578
0.85 0.10 0.05
Matches are distributed among these distances:
828 13 0.00
829 17 0.00
830 70 0.01
831 218 0.02
832 86 0.01
833 2 0.00
834 1 0.00
835 10 0.00
836 16 0.00
837 6 0.00
838 27 0.00
839 9 0.00
840 36 0.00
841 45 0.00
842 7 0.00
843 19 0.00
844 10 0.00
845 5 0.00
846 2 0.00
847 5 0.00
848 1 0.00
849 2 0.00
850 3 0.00
851 95 0.01
852 60 0.01
853 5 0.00
854 4 0.00
855 208 0.02
856 28 0.00
857 49 0.01
858 84 0.01
859 6 0.00
860 1 0.00
861 7 0.00
862 3 0.00
863 4 0.00
864 13 0.00
865 36 0.00
866 701 0.07
867 217 0.02
868 93 0.01
869 69 0.01
870 3 0.00
871 2 0.00
872 6 0.00
873 5 0.00
874 1 0.00
875 49 0.01
876 157 0.02
877 177 0.02
878 89 0.01
879 4 0.00
880 7 0.00
881 3 0.00
882 74 0.01
883 16 0.00
884 6 0.00
885 60 0.01
886 23 0.00
887 101 0.01
888 125 0.01
889 3 0.00
890 243 0.02
891 249 0.03
892 12 0.00
893 70 0.01
894 425 0.04
895 59 0.01
896 46 0.00
897 155 0.02
898 500 0.05
899 612 0.06
900 594 0.06
901 391 0.04
902 416 0.04
903 1207 0.12
904 1220 0.13
905 349 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (903 bp):
CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGG
GTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
TCGCCGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGG
GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCC
GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
GGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
Found at i:16989781 original size:26 final size:26
Alignment explanation
Indices: 16989750--16989803 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
16989740 TGGGTTGACT
* *
16989750 TAGGCATACGGAGTTCTTTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
*
16989776 TAGGCATACAGAGTTCATTCTCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
16989802 TA
1 TA
16989804 AGATTGGACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCCCAGTC
Found at i:16990683 original size:26 final size:26
Alignment explanation
Indices: 16990654--16990705 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16990644 TTGACTTAGC
*
16990654 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCAAGTCTAAG
16990680 CATACGGAGTTCATTCCAAGTCTAAG
1 CATACGGAGTTCATTCCAAGTCTAAG
16990706 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCAAGTCTAAG
Found at i:16993374 original size:26 final size:26
Alignment explanation
Indices: 16993338--16993390 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16993328 GTTGACTTAG
16993338 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16993364 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16993390 G
1 G
16993391 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16996890 original size:26 final size:26
Alignment explanation
Indices: 16996861--16996911 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
16996851 GTTGACTTAG
* * *
16996861 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
*
16996887 GCATGCAGAATTCATTCCCAGTCTA
1 GCATACAGAATTCATTCCCAGTCTA
16996912 GGATCGGACT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:16997213 original size:903 final size:900
Alignment explanation
Indices: 16994237--16999129 Score: 5897
Period size: 903 Copynumber: 5.5 Consensus size: 900
16994227 TGAGTTGACT
* * ** *
16994237 TAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTACGGCAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGCT
* * ** *
16994302 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCTGGGG-ACCATCGTCGTATG-ATCGCCG
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCACCG-A-GCATCACCG
** * *
16994365 GAGAACCTGACCGGTGACATTAGGGTTCCGGTGAT--------CGGGGGGGTGTGCGCACATGAT
129 GAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGGTGTGCGCACATGAT
* * *
16994422 GTGCGATGGTTGCTGGTACTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
194 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
16994487 CACACCCCCTTAAAGAGCATTTGAAATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
259 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
16994552 AATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTT
324 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
16994617 TTGTGCATGCCAATAAAAATACAAGGATCACGTCTACGAAGTTTAGGGCCAAAATTCCTTCCGAA
389 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTCCGAA
* * *
16994682 AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAGAAATAGAAAACGAGTCAT
454 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
16994747 TTTGCCGTGAAACTTCACGTGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCATAAAAATG
519 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
16994812 GCATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTT
584 GCATTGGCATGAAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTT
*
16994877 GCACATCTCGTCTCTCTGGCCGACGTA--G-T-----G-CA--CG--C-C-CGTTTCGTCGGTTG
649 GCGCATC-CGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCAGCCGCCCGCTCGTTTCGTCGGTTG
* * * * *
16994927 GCTTAGGCATACGGAGTTCATTCACAATCTAAGATTGGACCAGACCAAGGGTTACGGTAGTAGGA
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGTAGGA
* * * *
16994992 TCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGTCCCTCTAGCCGGCT
778 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
16995057 CAGCACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
843 GAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * *
16995115 TAAGTATACGGAGTTCATTCCCA-TGCTAAGATCAAACTGGACCGAGGGTTACGACAGCACATGC
1 TAAGCATACGGAGTTCATTCCCAGT-CTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGC
* * *
16995179 TAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C--G-----CCGG
65 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCACCGAGCATCACCGG
** * * * * * *
16995234 AGAACCTGACCGACGGCATTGGCATTCCAGCGATCGGGGGGCCGAGGGGGTGTACGTAAATGATG
130 AGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGGTGTGCGCACATGATG
* *
16995299 TGCGATGGGTGCTGGTACTTGCTGGTACTTGGCCCATATATT-GCCCCCTATCCCTCATAAAACC
195 TGCGA----TG--GG----TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
16995363 TTGAGAACTCACGA-CCCCTTAAAAAGCATTTAAGATTTT--A----------C---AG-C--T-
250 TCGAGAACTCAC-ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
16995408 -A-------AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
314 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
**
16995465 CTG-GGTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAA
379 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAA
* *
16995528 TCCTTCCGAAAAAATTTT-AAAAATCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAA
444 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
* * *
16995592 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAAATTACAAGG
509 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
16995657 CATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTG-CATAAACCCACCTACCACCCTATCG
574 CATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCA-AAACCCACCTACCACCCTATCG
* * *
16995721 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC-CCCCCGCCCGCCGCCCGCTTGT
638 ATCCACGGCTTGCGCAT-CCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCAGCCGCCCGCTCGT
* * * * *
16995785 TCCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACTGAGGGTTG
702 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTA
* * * * * *
16995850 TGGCA--A-GATCGACAGCACACAGAGGGGGACCCGATCGATCCCCGACTAT-CGCATCCTGCCC
767 CGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCTGGCT-TGCGCATCCCGCCC
* * * * * * *
16995911 CTCTGGCCGACTGAGCGCCCGCATGCTCGTTTCATGGATTAACTTAGGCATACGGAGTTCATTCC
831 CTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
*
16995976 CAATC
896 CAGTC
* * * *
16995981 TAAACATACGGAGTTCAATCCCAGTATAAGATCAGA-TCGGACCGAGGGTTGCGGCAGCACATGC
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTACGGCAGCACATGC
* ** * * * *
16996045 TGGGATCGGGCATGTGCTGGCACCGTATTTTTCTTCGTCGGGGCACCATC-GCGCAGCATCATCG
65 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCACCG-AGCATCACCG
*
16996109 GAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGAGGACCGGGGGGGTGTGCGCACATGA
129 GAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGG-GGGCCGGGGGGGTGTGCGCACATGA
** * *
16996174 TGTGCGATGCATGCTGGTAGTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAAC
193 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
16996239 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
258 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
16996304 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAATTTTTTAGCTGAATTTT
323 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
16996369 TTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTGTT-GGGCCAAAAATCCTTCCA
388 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT-TTAGGGCCAAAAATCCTTCCG
*
16996433 AAAAAATTTTAAAAAATCCCGAACCGCAGAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
452 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
16996498 GTCTTGCCATGAAACTTCACGTGAACGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAA
517 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
16996563 TGGCATTGGCATGAAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACAGC
582 TGGCATTGGCATGAAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGC
* * *
16996628 TTGCACATCCGTTCTCTCTGGCTGACGTAGTGCTCGCCCGCCAGCCCGCCCGCTCGTTTCATCGG
647 TTGCGCATCCG-TCTCTCTGGCCGACGTAGTGCTCGCCCGCCAG-CCGCCCGCTCGTTTCGTCGG
* * * * **
16996693 TTGGCTTAGGCATATGGAGTTCATTCCCATTCTAAGATTGGACCAGACCGAGGGTTGCCACAGTA
710 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGTA
* * * * * * * * *
16996758 GGATTGGTAGTACGCAAAGTGGGACTCGATCGATCCCTGACTTGCGCATCTCGCCCCTCTGGTCG
775 GGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCG
** * * ** *
16996823 ATTGAGCGCCCGCACACTCATTTCAAGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTC
840 GCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * *
16996884 TAAGCATGCAGAATTCATTCCCAGTCTAGGATCGGACTGGACTGAGGGTTACGGCAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGCT
* ** * * * * **
16996949 AGGCTCAAGAATGTGCTGGTG-CGCATTTTTCTTTGTTGGGGTAGCATCACCAGAGCATCGTCGG
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCACC-GAGCATCACCGG
* * **
16997013 AGAATCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGTTGGGGGGGTGTGCGCACATGAT
130 AGAACCTGACCGACGGCATTGGGGTTCCGGTGATC-GGGGGGCCGGGGGGGTGTGCGCACATGAT
* * * *
16997078 GTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCTCCTATCCCTCATAAAACCTCGACAACT
194 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
16997143 CACACCCCCTTAAAGAGTATTTGAGATTCTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
259 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
16997208 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTT
324 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
16997273 TTATGCATGCCAAAAAAAATACAAGGATCATGTCTATCAAGTTT-GGGTCCAAAAATACTTTCGA
389 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGG-CCAAAAATCCTTCCGA
* * ** **
16997337 AAAAATTTTAAAAAATCCAGAACTGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCG
453 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * *
16997402 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCGTAAAAAT
518 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
16997467 GGCATTGGTACAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
583 GGCATTGG--CATGAAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGG
* ** * * * *
16997530 CTTGCGCATCCCATCTCTCTGATCGGCATAGTGCACGCCCATCC-GCC-CGCCGCTCGTTTCGTC
646 CTTGCGCAT-CCGTCTCTCTGGCCGACGTAGTGCTCGCCC-GCCAGCCGC-CCGCTCGTTTCGTC
* * * * * * **
16997593 GATTGGCTTAGGCATACGGAGTTAATTCCCAGTCTTAAGATCAGATCAGACCGGGGGTTCCGATA
708 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC-TAAGATCGGACCAGACCGAGGGTTACGGCA
* * * * * *
16997658 GTAGGATCGGTAGGATGCAAAGGGGGACCCGACCGAT-CCTCGGCTTGCACATCCCGCCCCTCTG
772 GTAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCT-GGCTTGCGCATCCCGCCCCTCTG
* * * * * *
16997722 ACAGGTTGAGCACCTGCACGCTCATTTCGTGGGTTGACTTAGGCATAAGAAGTTCATTCCCAGTC
836 GCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * *
16997787 TAAGCATACGGAGTTCATTCCCAGTCTAGGATCAGACCGGACCGACGGTTACGGCAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGCT
* * * *
16997852 GGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCATTGGGGCACCATCGCCGGAGCATCACCGG
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCACC-GAGCATCACCGG
* * *
16997917 AGAACCTGACC-AGCGGCATTGGGGTTCTGGTGATTGGGGGGCCGGGGTGGGTTGTGCACACATG
130 AGAACCTGACCGA-CGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGG-GGG-TGTGCGCACATG
* * * *
16997981 ATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAGCCTCAAGAA
192 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
16998046 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
257 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
16998111 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
322 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
** * ** * * * *
16998176 TTTTGTGCACACCAACAAAAATACAAGGATCACAACTACCAAGTTTGGGGCGAAAACTTCTTCCG
387 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTCCG
* * *
16998241 AAAAAATTTTAACAAATCCC-AACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
452 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
16998305 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
517 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
16998370 TGGCATTGGCA-CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGG
582 TGGCATTGGCATGA-AGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGG
* * * * * *
16998434 CTTGCGCATCCCATATCTCTGGCCCG-CGTAGTGCCCGCCCGCCCGTCTGCCTGCTCGTTTCGTC
646 CTTGCGCAT-CCGTCTCTCTGG-CCGACGTAGTGCTCGCCCGCCAG-CCGCCCGCTCGTTTCGTC
* *
16998498 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT-AGATCAGACC-GAACTGAGGGTTACGGCA
708 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTACGGCA
* * * * *
16998561 GCAAGATCGACAGCACGCAGAGGGGGACCTGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGG
772 GTAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGG
* * *
16998626 TCGGCTGAGCACCCGTACG--C---TC----GTT---TT--G--T---GAGTTGA----C--T-
837 CCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* ** * * *
16998664 TAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTTCGACAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGCT
* * * *** * **
16998729 GGGCTGGGGCTTGTGCTGGTGCCACATTTTTCTTCACCGGGACACCATCGTCGTATG-ATCACCG
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCACCG-A-GCATCACCG
*
16998793 GAGAACCTGACCGACGGCATTAGGGTTCCGGTGAT--------C-GGGGGGTGTGCGCACATGAT
129 GAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGGTGTGCGCACATGAT
* * *
16998849 GTGCGAT-GGTGGCTGGTACTTGGGCCTTATATTGGCCCGCTATCCCTCATCAAACCTTGAGAAC
194 GTGCGATGGGT-GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
16998913 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCT-
258 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
16998977 AGAATGGGGACACTTTTTGCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTT
323 A-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *
16999042 TTTTGTGCATGCCAATAAAAATACAAAGATCATGTCTATCAAGTTTAGGGCCAAAATTCCTTCC-
387 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTCCG
*
16999106 AAAAAATTTT-AAAAATCCCAAACC
452 AAAAAATTTTAAAAAATCCCGAACC
16999130 CACCTACCAC
Statistics
Matches: 3485, Mismatches: 406, Indels: 261
0.84 0.10 0.06
Matches are distributed among these distances:
854 2 0.00
855 195 0.06
856 28 0.01
857 48 0.01
858 58 0.02
862 1 0.00
863 1 0.00
864 8 0.00
865 21 0.01
866 444 0.13
867 30 0.01
868 89 0.03
869 63 0.02
870 3 0.00
871 1 0.00
872 1 0.00
873 3 0.00
876 63 0.02
877 171 0.05
878 96 0.03
879 5 0.00
880 4 0.00
882 1 0.00
883 3 0.00
884 6 0.00
885 55 0.02
886 23 0.01
887 1 0.00
888 1 0.00
889 1 0.00
891 2 0.00
894 3 0.00
895 57 0.02
896 44 0.01
897 32 0.01
898 200 0.06
899 10 0.00
900 70 0.02
901 2 0.00
902 80 0.02
903 971 0.28
904 271 0.08
905 313 0.09
906 4 0.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGCT
GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCACCGAGCATCACCGGA
GAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTCCGAAAA
AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCATGAAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCAGCCGCCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGTAGGATCG
GCAGCACGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
CACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
Found at i:17000296 original size:26 final size:26
Alignment explanation
Indices: 17000266--17000316 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
17000256 TGACTTAGGT
17000266 ATACGGAGTTCATTCCCAGTCTAAGG
1 ATACGGAGTTCATTCCCAGTCTAAGG
17000292 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
17000317 ACCGGACTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGG
Found at i:17001193 original size:26 final size:26
Alignment explanation
Indices: 17001157--17001209 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17001147 GTTGACTTAG
17001157 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
17001183 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17001209 G
1 G
17001210 ATTGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17001836 original size:904 final size:891
Alignment explanation
Indices: 16999190--17004501 Score: 7197
Period size: 893 Copynumber: 5.9 Consensus size: 891
16999180 GTGTAGTGCT
* * * * *
16999190 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCACAATCTAAGATTGGACCAGACCA
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
* ** * *
16999255 AGGGTTGCGGTAGTAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATC
66 AGGGTTGCAGTAGTAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATC
* *
16999320 CCGTCCCTCTGGCCGGC-GCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGT
131 CCGCCCCTCTGG-CGGCTG-AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * *
16999384 TCATTACCAGTCTAAGCTTATGGAGTTCATTCCCAGCCTAAGATCGAACTGGACCGAGGGTTACG
194 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACG
* * *
16999449 GCAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGC-C
259 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTC
* * *
16999513 GGAGAACCTGACCGACGGCATTGGGGTTTC-AGCGATCGGGGGGGCCGGGGGGGTGTGCGTACAT
324 GGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATC-GGGGGGCCGGGGGGGTGTGCGCACAT
* * *
16999577 GATGTGCGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTTGAGA
387 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
16999642 ACTCACGCCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTC
452 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
16999706 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTT
517 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
*
16999771 TTTTTGTGCATGCCAAAAAAAATAC-AGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTCC
582 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-CTTCC
* * * *
16999835 GAAAAAATTTTAAAAAATGTCAAACCGAAAAAATTTTCAAAAATCATGAAAAATAGAAAACGAGT
646 GAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
*
16999900 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAA
711 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
16999965 ATGGCATTGGTATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
776 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* *
17000030 CATGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCCGCCCGCCCGCC
841 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCGCCCCGCCCGCCCGCC
* * * * *
17000081 CGCTTGTTCCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAAACCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
** * * * *
17000146 AGGGTTGTGGTAGTAGGATCGGTAGCACACAGAGGGGGACCCGGTCGATCCCTGACTTTCACATC
66 AGGGTTGCAGTAGTAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATC
* * * * *
17000211 CCGCCCCTTTTGCTGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGTATACGGAGTT
131 CCGCCCCTCTGGC-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * * *
17000276 CATTCCCAGTCTAAGGATACGGAGTTCATTCCCAGTCTAAGACCGGACTAGACCGAAGGTTACAG
195 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGG
* *
17000341 CAGCACATGCTGGGCTCGGACATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGC-CG
260 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCG
* * * * *
17000405 GAGAACCTGACCGGCTGCATTGGGGTTTCGACGATCGGGGGGGCGGGGTGGGTGTTCGAACATGA
325 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGG-GGGTGTGCGCACATGA
*
17000470 TGTGCGATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
389 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
17000535 TCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
454 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
17000600 AAATAGGGACACTTTTTTCGAATGG-CAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TT
519 AAATGGGGACACTTTTTTCAAATGGTC-ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
17000663 TTTTGTGCATGCCAACAAAAATACAATGATCATGTCTACCAAGTTTGGGGCCAAAAATCTTTCCG
583 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATC-TTCCG
* * * **
17000728 AAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTC
647 AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
17000793 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
712 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
17000858 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGC
777 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
17000923 TTGCGCATCCCGTCTCTCTGGCCGGCGTACTGTCCGCCCCACCCGACCAG-C
842 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CCGCCCCGCCCG-CCCGCC
* *
17000974 CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATTGGACCAGACCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
* * * *
17001039 AGGGTTGCAGCAGTAGGATCAGCAGCACGCAGAGGGAGACCCGGTCGATCCCTGGCTTGCGCATC
66 AGGGTTGCAGTAGTAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATC
* *
17001104 CCACCCCTCTGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
131 CCGCCCCTCTGG-CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * ** *
17001169 CATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGATTGAGGGTTGCGG
195 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGG
* * * *
17001234 CAGCACATGCTGGGCTCGAGCAAGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCAG
260 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC--
* *
17001299 AGCATCGCCAGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTG
320 -GC-TCG---GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTG
* * *
17001364 TGCACATGATGTGCAATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
380 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
17001429 CTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
445 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * *
17001494 AGGTGTCTGAAATGGTGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAG
510 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
** * * ** *
17001559 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATATTTGCCAACATTGGGACCAAAAA
575 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA
* * * *
17001624 TCTTCCCGAAAAAATTTCAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTTAAAAATAGAA
640 TCTT-CCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
* * * *
17001689 AACGAGTCGTCTTACCATGAAACTCCACGTGAAGGCTTAAGGGACCATTGTATGAGTTCACAAGC
704 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
17001754 CATAAAAATGGCATTGGCACT-CAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCG
769 CATAAAAATGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * *
17001818 ATCCACGGCTTTCGCATCCTGTCTCTTTGGCCGGCGTAGTGCCTG-CCCGCCCGCCCGCC
833 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC-GCCCCGCCCGCCCGCC
* * *
17001877 CGCTCCTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGGA-CGGACC
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC-GGACCAGACC
* * * * ** **
17001941 GAGGGTTGCAGCAGCAGGATTGGCATCACACAGAGGGGGACCCGACCGATCCCCAGCTTGCGCAT
65 GAGGGTTGCAGTAGTAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCAT
* * * * * *
17002006 CCCGCCCCTCTGGCGGGCTTAGCACCCGCACGCTCGTTTCCTGGATTGAATTAGGTATACGGAGT
130 CCCGCCCCTCTGGC-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* *
17002071 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGATCGAGGGTTAC
194 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACT-GGACCGAGGGTTAC
* * * *
17002135 GGTAGCACATGGTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCG-T
258 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT
* * * *
17002199 CGGAGAACCTGATCGACGGCATTGGGGTTCCGACGATCGAGAGGGCCGGGGGGTTGTGCGCACAT
323 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACAT
17002264 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
387 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
17002329 ACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
452 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
17002394 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGATGAATA
517 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * **
17002459 TTTTTGTGCATGCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACCCCTTCC
582 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-ATCTTCC
* ** *
17002524 AAAAAAATTTTAAAAAATC-CTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAG
646 GAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* *
17002588 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCAATT-TATGAATTTACAAGCTATAA
710 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC-ATTGTATGAATTTACAAGCCATAA
* * *
17002652 AAATGGCATTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCAC
774 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * *
17002717 GGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCC-CACCCGCACACCCGCC
839 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCGC-CCCGCCCGCCCGCC
* * * * *
17002770 CGCTCATTTCGTCGGTTGGCCTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGTACCGGACAG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
* * * ** ** * * * *
17002835 AGGGTTGCGGTAGCAAGATCGGCAGCATGCAGAATGGGACTCGATCGAT-CCTCGACTTACGCAT
66 AGGGTTGCAGTAGTAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCT-GGCTTGCGCAT
** * * *
17002899 CCCTTCCCTCTGGTCGGTTGAACGCCCGCACG-TCCGTTTCGTGGGATGACTTAGGCATACGGAG
130 CCCGCCCCTCTGG-CGGCTGAGCGCCCGCACGCT-CGTTTCGTGGGTTGACTTAGGCATACGGAG
* * * *
17002963 TACATTCCCAGTCTAAGCATA-GAAGTTCATTCCCAGTCTAAGATC-AGACCGGACCGAGGGTTT
193 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACTGGACCGAGGGTTA
* * * * *
17003026 TGGTAGCACATGCTGGGCTCGGGGCATGTGCTGGTGTCGTATTTTTCTTCATCGGGGCACCATCG
257 CGGCAGCACATGCTGGGCTC-GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--
* ** * *
17003091 CCGAAGCATTGTCGGAGAACTTGACCGGCGGCATTAAGGTTCTGGCGATCGGGGGGACCGGGGGG
319 -C---GC----TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGG
* * *
17003156 GTGTGCGCACATGATGTGCAATGGGTGCTTGTACTTGGCCCTTATATTTGCCCCCTATCCCTCAT
375 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
17003221 CAAACCTTGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
440 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
17003286 CATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAACGGTCACAAAATCTTGTACACTTTGAGTT
505 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
17003351 TTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCC
570 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * *
17003416 AAAACTTCTTTCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAA
635 AAAA-ATCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
* *
17003481 TAGAACACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTA
699 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
17003546 CAAGCCATAAAAATGGCATTGGCACGCTGAAATATGAAGATGTGCCTAAACCCTCCTACCACCCT
764 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
** * * *
17003611 ATCGATCCATAGCTTGCGCATCCCATCTCTCTGGCTGACGTAGTGCC-CACCCGCCCACCCGCC
829 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCGC-CCCGCCCGCCCGCC
* * * * * *
17003674 CGCTC-CTT--TC-G-T--C---GG--TACGGAGTTCATTCCCAATCTAAGATCAGACCGGACTG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
* ** *
17003727 AGGGTTGCAGTAGTAGGATCAGCAGCACACAGAGGGGGACATGGCCGATCCCTGGCTTGCGCATC
66 AGGGTTGCAGTAGTAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATC
** * ** * * * *
17003792 CATCCCTTCTGGCCGATTGAGCGCTCGTACGCTCGTTTCGTAGGTTGACTTAGGCATACGAAGTT
131 CCGCCCCTCTGG-CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * * * *
17003857 TATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGTCTGAGGGTTACGA
195 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGG
* *
17003922 CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGG
260 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC--
* * * *
17003987 AGCATCGTCAAAGAACCTGACTGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCCGGGGGGTGT
320 -GC-TCG---GAGAACCTGACCGGCGGCATTGGGGTTCCGACGA-TCGGGGGGCCGGGGGGGTGT
* * *
17004052 GCGCAAATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAA
379 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*
17004117 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATT
444 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
17004182 AAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCAAGTTTTTA
509 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* ** *
17004247 GCTGAATTTTTTTGTGCATGCCAGCAAACGA-ACAAGGATCATGTCTACCAAGTTTGGGG-CAAA
574 GCTGAATTTTTTTGTGCATGCCA-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* *
17004310 ACTCCCTCCGAAAAAATTTTAAAAAATCTCGAACC-TCAAAAAGTTTCAAAAATCATGAAAAATA
638 AAT-CTTCCGAAAAAATTTTAAAAAATCTCGAACCGT-AAAAAGTTTCAAAAATCATGAAAAATA
* *
17004374 GAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACA
701 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
17004439 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACTTACCGCCCT
766 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
17004502 CTCGTTTCGT
Statistics
Matches: 3922, Mismatches: 426, Indels: 146
0.87 0.09 0.03
Matches are distributed among these distances:
889 3 0.00
890 14 0.00
891 633 0.16
892 874 0.22
893 1033 0.26
894 13 0.00
895 4 0.00
896 3 0.00
897 2 0.00
899 4 0.00
900 3 0.00
901 4 0.00
902 5 0.00
903 492 0.13
904 833 0.21
905 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
AGGGTTGCAGTAGTAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATC
CCGCCCCTCTGGCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGGC
AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGG
AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTCCGAAAA
AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGTCTCTCTGGCCGACGTAGTGCCGCCCCGCCCGCCCGCC
Found at i:17002098 original size:26 final size:26
Alignment explanation
Indices: 17002062--17002112 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
17002052 TGAATTAGGT
17002062 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
17002088 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
17002113 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:17003874 original size:26 final size:26
Alignment explanation
Indices: 17003845--17003897 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17003835 GTTGACTTAG
*
17003845 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
17003871 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17003897 G
1 G
17003898 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17004716 original size:26 final size:26
Alignment explanation
Indices: 17004680--17004732 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17004670 GTTGACTTAG
17004680 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
* *
17004706 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
17004732 G
1 G
17004733 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:17005615 original size:26 final size:26
Alignment explanation
Indices: 17005579--17005631 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17005569 GTTCACTTAG
*
17005579 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17005605 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17005631 G
1 G
17005632 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17006506 original size:26 final size:26
Alignment explanation
Indices: 17006476--17006528 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17006466 GTTGACTTAG
17006476 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17006502 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17006528 G
1 G
17006529 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17006594 original size:897 final size:896
Alignment explanation
Indices: 17004495--17011326 Score: 8706
Period size: 897 Copynumber: 7.6 Consensus size: 896
17004485 AACCCACTTA
* * *
17004495 CCGCCCTCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCG
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * * * * * * ** * *
17004560 AACTGAAGGTTGT-G--GCAGGACCGACAGCATGTAAAGGGGGACCCGGTCGATCCTTGGCTTAC
66 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTTC
* * *
17004622 GCATCGCGCCCCTCTGGCCGG-TCGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
131 GTATCCCGCCCCTCTGGCCGGCT-GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
* * *
17004686 GGAGTTCATTACCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGG
195 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
** * * * * *
17004751 TTGCGGTAGCACATGCTGGGCTTGGGCACGAGCTGGTGCAGCATTTTTCTTCATCGGGGCACCAT
260 TTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* * * ** * *
17004816 CGCCGGAGCATAGTCAGAGAACCTGACCGACGGCATTAAGGTTTCGACAATCGGGGGGTCGGGGG
325 CGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGG
* * * *
17004881 GTTGTGCTCAGATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCA
390 GGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
17004946 TCAAACCTCAAGTACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTCG
455 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
** *
17005011 CCATTAAAGTGTCTGAAATGGGGATGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGC
520 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
*
17005076 TTTTAGCTGAATTTTTTTATGCATGCCAGA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGG
585 TTTTAGCTGAATTTTTTTGTGCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
** * * *
17005140 CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAATCGTAAAAAGTTTAAAAAATCATGAAA
649 CCAAAACTCCTTCTGAAAAAATTTTAAAAAATCC-GAACCGCAAAAAGTTTCAAAAATCATGAAA
* *
17005205 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGACTTAAGGGACCATTGTATGAATT
713 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * *** **
17005270 TGCAATCCATAAAAATGGCATTCGCACACAGAAATATGAAGATGTTTCTAAACCCACCTACCACC
778 TACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * ** *
17005335 CTTTCGATCCACGGCTTGTGCATCCCGTCTCTTTGGTCGGTGTAGTGCCTGCCCGC
843 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC-C
*
17005391 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCCGTCTAAGATCAGACCG
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * * * *
17005456 AACCGAGGGTTGTGGTAGCAGGATCTACAGCACGCAGAGGGGGACTCGGTCGATCCCC-AGTTT-
66 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTTC
* * * * * * *
17005519 GTGCATCCCGCCCATCTGGCCGACTGAGTGCTCGCACGCTAATTTCGTGCGTTCACTTAGGCATA
131 GT--ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
* * *
17005584 TGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGG
194 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
* * ** * *
17005649 GTCGTGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCA
259 GTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * * *
17005714 TCGTCAGAGTATCG-CTGGAGAACCTGGCC-AGCGGCATTGGGATTTCGACGATCGAGGGGCCGG
324 TCGTCGGAGCATCGTC-GGAGAACCTGACCGA-CGGCATTGGGGTTTCGACGATCGGGGGGCCGG
* * * *
17005777 GGGGGTGTTCACGCATGATGTACGATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCC
387 GGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
17005842 TCATCAAACCTCGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAG
452 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
17005907 TAGCCATTAAAGTGTCTGAAATGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
517 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
17005972 AG-TTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAACGG-TCACGTTTACCAAGTTTG
582 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA-GGATCACGTCTACCAAGTTTG
* * * *
17006035 GGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCAAACTGCAAAAAGTTTCAAAAATCCTGA
646 GGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCGAACCGCAAAAAGTTTCAAAAATCATGA
*
17006100 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTTAAGGCTTAAGGGACCATTGTATGAA
711 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * *
17006165 TTTAGAAGCCAT-AAAATGGCATTGGAATGTAGAAATATGAAGATGTGCCTAAACACAACTACCA
776 TTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
17006229 CCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCC
841 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC
* ** * *
17006285 GTCTGCCCGCTTTTTTCGTCGATTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGAC
1 --CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * *
17006350 TGGACCTGAGGGTTGCGGCAGCAGGATTGGCAGCACACAGAGGGGGACCCGATCGATCCCCGACT
64 CGGACC-GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGACT
* * * * *
17006415 TTCGTATCCTGCCCCTCTGGCAGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCAT
128 TTCGTATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
* *
17006480 ACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAG
193 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* ** * * *
17006545 GGTTACGACAGCACATTTTAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGACACC
258 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* * * * * **
17006610 ATCATCGAAGCATTGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGG-CGGG
323 ATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGCCGGG
* * * *
17006674 AGGGTGTGCACACACGATATGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
388 GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * *
17006739 CATCAAACCTAGAGAGCTCACACCACCTTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGT
453 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * * * *
17006804 AGCCATTAAAGTGTATGAAATGAGGACCCTTTTTTCAAATGGTCATAAAATTTTGTACACTTCGA
518 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
*
17006869 GTTTTTAGCTGAATTTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGG
583 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * * *
17006933 GCCAAAACT-ATTTTCGAAAAAATTTTAAAAAGTCTCGAACCGTAAAAATTTTCAAAAATCGTGA
648 GCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCATGA
* *
17006997 AAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTGAGGGACCATTGTATGAA
711 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * *
17007062 TTTACAGGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTGCCA
776 TTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * *
17007127 CCCTATCGATCTACGGCTTGCGCATCCCGTCTCTCTAGCCGACATAGTGCCCGCCTGCCC
841 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CC-GCCC
* * * *
17007187 GTCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGATT-ATTCTCAGTCTAAGATCAAA
1 --CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG-TTCATTCCCAGTCTAAGATCAGA
** * * * * * *
17007251 CCGGACCGAGGGTTACGACAGCAGGATCAACAGCATGTAGAGGGGGACCCGA-CTGATCCTCGGC
63 CCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATC-GATCCCCGAC
* * * *
17007315 TTGCGTATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTCACTTAGGCA
127 TTTCGTATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
* * * * * *
17007380 TACGGAGTTCATTCCCGGTCTAAGCATCCGGAGTTCATTCGCAGTCTAACATTGAACCGGACCGA
192 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
* * * * * * *
17007445 GGGTTACGGA-AGCACAGGCTGGGGTCGAGCATGTGTTGGTGCCGCAGTTTTCTTC-TCCAGGGC
257 GGGTTGC-GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-CGGGGC
* * * * *
17007508 ACCATCGTCAGAGCATCGTCGAAAAACCTGACCGACGACATTGGGGTTGC-AGCGATCGGGGGGG
320 ACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGA-CGATC-GGGGGG
* ** *
17007572 TCGGGGGGTGTGTG--CACATGATGTGCGATGGGTGCTGGTAGATGGCCCTTATATTGGCCTCCT
383 CCGGGGGG-GTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
17007635 ATCCCTCATCAAACCT-GAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTATACAGGTTTGT
447 ATCCCTCATCAAACCTCG-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
17007699 TGCCAGTAGCCATTAAAGTGTGTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTAC
511 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * * *
17007764 ACTTGGAGTTTTTAGCTGAATTTTTTTTTGCATACCAACAAAAATACAAGGATCACGCCTA-CGA
576 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * **
17007828 GATTTGGGGCCAAAACTCCTT-TCGAAAAGAATTTTAAAAAATCTTGAACTGCAAAAAGTTTTGA
641 G-TTTGGGGCCAAAACTCCTTCT-GAAAA-AATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAA
*
17007892 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCA
702 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
17007957 TTGTATGAATTTACAAGCCATAAAAATGGAATTGG--TGCATAGAAATATGAAGATGTGCCAAAA
767 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG--TAGAAATATGAAGATGTGCCTAAA
* * * ** * *
17008020 CCCACCTACCATCCTATCTATCCACGGCTTGCACATCTTGTCTCTCTCGTCGAC-TAGTGCCCG-
830 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
17008083 -C
895 CC
* *
17008084 CCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCG
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * ** * * * *
17008149 GATCGAGGGTTGTAGCATTAGGATTGACAGCACGCAGAAGGGGACCCGGTCGATCCCCGACTTGC
66 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTTC
* * *
17008214 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTTGGCATACG
131 GTATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
* * * * *
17008279 GAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATATAAGATCGGATCAGACCGAGGGT
196 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* *
17008344 TGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCAGGGCACCA--
261 TGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
*
17008407 -T-----CA-C--CGGAGAACCTGACTGACGGCATTGGGG-TTCTGACGATCGGGGGGGCCGGGG
326 GTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTC-GACGATC-GGGGGGCCGGGG
* ** *
17008462 CGGGTGTGCGCACATGATGTGCGACAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCGT
389 -GGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* ** *
17008527 TATCAAACCTCGAGAACTTGCACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
453 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
17008592 AGCCATTAAAGTGTCTGAAATGGCGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
518 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
17008657 GTTTCTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCATGTCTA-CATAGTTAT-
583 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA-AGTT-TG
* *
17008720 GGG-CAAAACTCCTTTTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATG
646 GGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCATG
* *
17008784 AAAAATAGAAAACGAGTCGTTTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
710 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
17008849 ATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATATGCCTAAACCCACCTACC
775 ATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
17008914 ACCCTATCGATACACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCTC
840 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC-C
* *
17008973 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGAT-TGAACC
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACC
* * * * * *
17009037 GGTCTGAGGGTTGTGGCAGCAGGATTGCCAGCATGCAGAGGGGGACCCGATCGATCCCCG-GTTT
65 GGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTT
* * * * *
17009101 GCGTATCCCGCCCCTCTGGTCGGCTGAGTGCCCGAATGCTCGTTTCGTGGGTTGACTTAGGCATA
130 -CGTATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
* ** * * *
17009166 CAGAGTTCATTCCCAGTCTAAGCATACATAGTTCACTCCCAGTCTAAGATCAGACCAGACCGAGG
194 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
* * *
17009231 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGCTGCCGCATTTTTCTTCGTCGGGCCACCA
259 GTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * *
17009296 TCG-CTGGAGCATCGTCGGAGAACCTGACCGACGGCGTTAGGGTTTCGGCGATCGGGGGGCCGAG
324 TCGTC-GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGCCG-G
** * * *
17009360 GGGAGGTGTGTGCACATGATGTGCAATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCA
387 GGG-GGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
17009425 CTCATCAAACCTCAAGTACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCA
451 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
17009490 GTAGCCATTAAAGTGTTTGAAATGGGGAAACTTTTTGCAAATGGTCACAAAATCTTGTACACTTC
516 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
17009555 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
581 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
** * *
17009620 GGGCCAAAACTCCTTCCAAAAAAATTTTACAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
646 GGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCATG
* * **
17009685 AAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTACAA
710 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * * * *
17009750 ATCTAAAAGGCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCATAAACTCACCTACC
775 ATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
17009815 ACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGAC-AGCGTAGTGCTCG--C
840 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCC
* * * * *
17009870 CCGCCCACTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCA
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* ** * *
17009935 GACTGAGGGTTGCAGCAGCAGGATCGACAGCACGTAGAGGGGGACTCTG-TCGATCCCCGACTTG
66 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGAC-CCGATCGATCCCCGACTT-
* * * *
17009999 TGCG--TCCCACCCCTCTGGCCGGCTGAGTGCCCGCA--CTAATTTCGTGGGTTGACATAGGCAT
129 T-CGTATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
* * * * *
17010060 ACGGAGTTCAATCCCAGTCTAAACATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAG
193 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* * * * * * *
17010125 GGTTGTGATAGCACATTCTGGGCTTGGGCATGTGCTGGTACCACATTTTTCTTTGTCGGGGCACC
258 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* * * *** * *
17010190 ATTGCCGGAGCATCGTCGGAGAACCTGACCGGCGATGTTGGGGTTCCGACGATCGAGGGGG-CTG
323 ATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCG-GGGGGCCGG
* * * *
17010254 GGGGGTGTGCGCACATAATGTGTGATGGGTGCTGGTACTTGGCCCTTATAATGGCCCCCTATCCC
387 GGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
**
17010319 TCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
452 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
17010384 TAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACATCG
517 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* **
17010449 AGTTTTTAGCTGAATTTTTTTGTGCATGGCAACAAATGTACTAA-GATCACGTCTACCAAGTTT-
582 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC-AAGGATCACGTCTACCAAGTTTG
* * * *
17010512 AGGCCAAAAATCCTT-TCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCAT
646 GGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCAT
* *
17010576 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTCAAGGGACCATTGTATG
709 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* **
17010641 AATTTACAAGGCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTAC
774 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
17010706 CACCCTATCAATCCACAGCTTGCGCATCCCGTCTCTCTAGCCGGTC-TAGTGCCCG--C
839 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GACGTAGTGCCCGCCC
* ** *
17010762 CCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCA
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* ** * * * *
17010827 GACCGAGGGTTGTGGCAGTAGGATCGGTAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGC
66 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTTC
* * * * *
17010892 GCATCCCACCCCTCTGGCCGG-TGGGGCACCCGCACGCTCATTTCGTGGGTTGACATAGGCATAC
131 GTATCCCGCCCCTCTGGCCGGCT-GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
* * * * * *
17010956 GGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTATGATCAGACTGGACTGAGGC
195 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* * * * *
17011021 TTGC-AGCAGCACAGGCTGGGCTCTGGTATGTGTTGGTGCCGCA-TTTTCTTCATCGGGG---CA
260 TTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* *
17011081 ----C----CATCGTCGGAGAACCTGATCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
324 TCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATC-GGGGGGCCGGG
* * * *
17011138 GGGTGTGTGCGCACTTGATGTGTGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCC
388 GGG-GTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
17011203 TCATCAGACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAA
452 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
17011268 TAGCCATTAAAGTGTCTGAAATGGGGACACTATTTCCAAATGGTCACAAAATCTTGTAC
517 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
17011327 GCAGAGGGGG
Statistics
Matches: 5188, Mismatches: 645, Indels: 218
0.86 0.11 0.04
Matches are distributed among these distances:
882 44 0.01
883 9 0.00
884 412 0.08
885 29 0.01
886 225 0.04
887 6 0.00
888 3 0.00
889 281 0.05
890 4 0.00
891 3 0.00
892 356 0.07
893 247 0.05
894 127 0.02
895 460 0.09
896 474 0.09
897 598 0.12
898 194 0.04
899 445 0.09
900 271 0.05
901 480 0.09
902 260 0.05
903 65 0.01
904 195 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTTC
GTATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
TGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
GTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGG
GTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
AAAACTCCTTCTGAAAAAATTTTAAAAAATCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC
Found at i:17007413 original size:26 final size:26
Alignment explanation
Indices: 17007377--17007428 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17007367 GTTCACTTAG
*
17007377 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
17007403 GCATCCGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17007429 CATTGAACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17008324 original size:26 final size:26
Alignment explanation
Indices: 17008272--17008324 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17008262 GTTGACTTTG
* *
17008272 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATATAA
*
17008298 GCATATGGAGTTCATTCCCAATATAA
1 GCATACGGAGTTCATTCCCAATATAA
17008324 G
1 G
17008325 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATATAA
Found at i:17009198 original size:26 final size:26
Alignment explanation
Indices: 17009161--17009213 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17009151 GTTGACTTAG
*
17009161 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
*
17009187 GCATACATAGTTCACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
17009213 G
1 G
17009214 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:17010093 original size:26 final size:26
Alignment explanation
Indices: 17010057--17010107 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17010047 TTGACATAGG
17010057 CATACGGAGTTCAATCCCAGTCTAAA
1 CATACGGAGTTCAATCCCAGTCTAAA
* *
17010083 CATACGGAGTTCATTCCTAGTCTAA
1 CATACGGAGTTCAATCCCAGTCTAA
17010108 GATCAGACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCAATCCCAGTCTAAA
Found at i:17010986 original size:26 final size:26
Alignment explanation
Indices: 17010950--17011000 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17010940 GTTGACATAG
17010950 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
17010976 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAATCTA
17011001 TGATCAGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17012320 original size:26 final size:26
Alignment explanation
Indices: 17012289--17012364 Score: 125
Period size: 26 Copynumber: 2.9 Consensus size: 26
17012279 GACTTAGGCG
17012289 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
*
17012315 TACGGAGATCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
* *
17012341 TACGGAGTTCTTTCCCATTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
17012365 ATCAGACCGA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.29
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Done.