Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 110 of 190
Found at i:17153998 original size:26 final size:26
Alignment explanation
Indices: 17153969--17154018 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17153959 ATCCAATCTT
*
17153969 AGACTGGGAATGAACTCCATATGCTC
1 AGACTGGAAATGAACTCCATATGCTC
*
17153995 AGACTGGAAATGAACTCCGTATGC
1 AGACTGGAAATGAACTCCATATGC
17154019 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (26 bp):
AGACTGGAAATGAACTCCATATGCTC
Found at i:17154882 original size:26 final size:26
Alignment explanation
Indices: 17154844--17154896 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17154834 CTGATCTGAA
* *
17154844 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
17154870 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
17154896 C
1 C
17154897 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17156654 original size:26 final size:26
Alignment explanation
Indices: 17156618--17156670 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17156608 CTGGTCCAAT
17156618 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGATTGGGAATGAACTTCGTATG
*
17156644 CTTAGATTGGGAATGAATTTCGTATG
1 CTTAGATTGGGAATGAACTTCGTATG
17156670 C
1 C
17156671 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.11, G:0.26, T:0.36
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTTCGTATG
Found at i:17163015 original size:26 final size:26
Alignment explanation
Indices: 17162979--17163031 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17162969 CTGGTCCGAT
17162979 CTTAGACTGGGAATGAACATCGTATG
1 CTTAGACTGGGAATGAACATCGTATG
*
17163005 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACATCGTATG
17163031 C
1 C
17163032 GCAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACATCGTATG
Found at i:17163349 original size:904 final size:899
Alignment explanation
Indices: 17161665--17170322 Score: 10359
Period size: 904 Copynumber: 9.7 Consensus size: 899
17161655 TGGTTCAGGA
*
17161665 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAA
1 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
17161730 AAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAA
66 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
17161795 TGGCTACTGGCAGCAAACTTGTAAAATCTGAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTT
131 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
** * * **
17161860 TGATGAGAAATAGGGGACCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCTTAC
196 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* *
17161925 ACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGTCAC-T-GGTCAGGTTCTCCGACTATGC-C
261 ACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATG-C-CGTCGGTCAGGTTCTCCGACGATGCTC
* *
17161986 CCAGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
324 CGA-CGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA
* * **
17162051 CCGCAACCCTCGGT-TCAGTCCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGAAAGGGAAT
388 CCGCAA-CCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAAC-TCGTATGCTTAGACTGGGAAT
17162115 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGTG
450 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGTG
* * ** *
17162180 GGATGCGCAAGCCGGGGATAGGTCGGGTTCCCCTCTGCGTGCTGTTGATCCTACTGCCATAACCC
515 GGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCC
* * ** * * *
17162245 TCGGTCCGATCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATGAGC
580 TCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * ** * * *
17162310 GAGAGGGCGGGCATGCGGGCACTACACCGGCCAGACAGACAGGATGCGCAAGCCGTGGATCGATA
645 GGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* *
17162375 GGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTGCATGTCAATGCCATTTTTATGGCTTGT
710 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
* * * *
17162440 AAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTGT
775 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * *
17162505 TTTTCATGATTTTTGAAGCTTTTTTGCTTCGAGATTTTTTAAAATTATTTTGGAAAGAGTT
840 TTTTCACGATTTTTGAAACTTTTTTGCTTCGAGATTTTTTAAAATT-TTTTGGAAGGAGTT
* * * * * * *
17162566 TTGGCCCCAAAATTGGCAGACATGATCCTTGTATTTTTGTTGCCGTGCATAAAAAAATTCAACTA
1 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
17162631 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTCA
66 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
17162696 TGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-ATGGT
131 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGT
*
17162760 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGTGCGCA
195 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
*
17162825 CACCCCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
260 CA--CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
*** *
17162890 CCGACGATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATATGCTA
323 CCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA
* *
17162955 CTGCAATCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACATCGTATGCTTAGACTGGGAATG
388 CCGCAA-CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC-TCGTATGCTTAGACTGGGAATG
* * * * *
17163020 AACTTCGTATGCGC-AAGTCAACCCAAGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGTG
451 AACTCCGTATGC-CTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGTG
* * ** **
17163084 GGATGCGCAAGTCGGGGATCGGTAGGGTCCCCCTCTATGTGCTGCCGATCCTACTGCCGTAACCC
515 GGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCC
** *
17163149 TCAGTTTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
580 TCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * *
17163214 GGGCGGGCGGGCGGGCGTGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATA
645 GGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * * *
17163279 GGGTGGTAGGTGGGTTTAGGCCCATCTTCATATTTCTCCGTGCCAATGCCATTTTTATGGCATGT
710 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
*
17163344 AAATTCATACAATGGTCCCTTAAGCCTTAACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
775 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * * *
17163409 TTTTCACGATTTTTAAAACTTTTTGAGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTT
840 TTTTCACGATTTTTGAAACTTTTT-TGCTTCGAGATTTTTTAAAA-TTTTTTGGAAGGAGTT
** * * * * * *
17163471 TTCACCCTAAACTTCGCAAACGTAATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
1 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*** * * * * *
17163536 AAAACTCCTGGTGCACAAGATTTTGTGGCCATTTGAAAAAAATGTCCCTATTTTAGACACTTTAA
66 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
17163601 TGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTT
131 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * * *
17163666 TCATGAGGGATAGGGGGTCAATATATGGGCCAAGTACCAGCACCCATCGCACATCATTTGTGCAC
196 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA--TGTGCGC
* * * **
17163731 ACCCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGTGATGCTC
259 ACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC
* * * * **
17163795 TGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGTATGTGCTGT
324 CGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
*
17163860 CGCAA-C-C-GTC--G---G----T---C-GGG--T---CT-G-AT-CTTAGACTGGGAACGAAC
389 CGCAACCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGGAATGAAC
* * *
17163901 TCCGTATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGTGCTCAGCCGACCAGAGGGGCT-GGA
454 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGG-TGGGA
** * * ** **
17163965 TGCGCAAGCTAGGGATCGGTCGGGTCCCCCTCTGTGTGTTGCCGATCCTTTTGCTGCAACCCTCT
518 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTC-
* * * * * * *
17164030 ATTCAGTTC-AATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGG
582 AGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* * * * * * *
17164094 ACGGGCGGGC--GC--ACACAATGCCAGCCAGAGAGAGGGGATACGCAAGCCGTGGATCGATAGG
647 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* ** *
17164155 GTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTAGTAA
712 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* *
17164220 ATTCATACAATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCGTTTTCTATTT
777 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * *
17164285 TTCACGATTTTTGAAACTTTTTACTG-TTCGGGATTTTTTAAAATTTCTTCGGAATGAGTT
842 TTCACGATTTTTGAAACTTTTT--TGCTTCGAGATTTTTTAAAATTT-TTTGGAAGGAGTT
* *
17164345 TTGGCCCCAAACTTGGTATACATGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTA
1 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
17164409 AAAATTCGAAGTGTACAAGATTTTG-GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
66 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * *
17164473 TGCCTACTGGCAGCAAACCGGTAAAATCTCAAATTCTCTTTAA-GGAGTGTGAGTTCTCGAGGTT
131 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
*
17164537 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACGTCATGTGCGCAC
196 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* ** * * **
17164602 ACCCCCCGGCCCCCCCAATCGTCGGAACCTAAATGTCGTCGATCAGGTTCTCCGGTGATGCTCCG
261 ACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG
* * * * *
17164667 ACGATGGTGCCCCGATGAAGAAAAATGCGGCA-CAGCACATGCCCGAGCCCAGCATGTGATGCCA
326 ACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCG
* * ** *
17164731 CAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCAGGAATGAAT
391 CAA-CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACT-CGTATGCTTAGACTGGGAATGAAC
* * * * * * **
17164796 TCCGTACGCTTAAGTCAACCCATGAAATGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGACGGGAT
454 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGTGGGAT
* * * *
17164861 GCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCATAA-CCTCAG
519 GCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTCAG
* * *
17164925 TCTGGTCTGATCTTACACTGGGAATGAACTCCGTATGCCCTAAGCCAACCGACGAAACGAGCGAG
584 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG-CCTAAGCCAACCGACGAAACGAGCGGG
* *** * * * *
17164990 CAGGCGAAAGGGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATTGATATGG
648 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * *** *
17165055 TGGTAGGTGGGTTTAGGTACATCGTCATATTTCTATGTGCCAATACCATTTTTATGGCTTGTAAA
713 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
17165120 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
778 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* *
17165185 TCACGATTTTTGAAAC-TTTTTGCGATTCAAGATTTTTTAAAATTTTTTTGAAAGGAGTT
843 TCACGATTTTTGAAACTTTTTTGC--TTCGAGATTTTTTAAAA-TTTTTTGGAAGGAGTT
* * * * *
17165244 TTGCCCCCAAACATGGTAGACGTGATCCTTGTGTTTTTTTTGGCATGCAAAAAAAAATTCAGCTA
1 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
17165309 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
66 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * *
17165374 TGGCTACTAGTAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTT
131 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * * *
17165439 TAATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCAACCATCACACATCATGTGCGCAC
196 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * *
17165504 A--------CCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCTGGCGAT-CATCC
261 ACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGC-TCC
* *
17165560 GACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
325 GACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACC
* * *
17165625 GCAAGCCTTGGTCTGGTCTGATCTTAGATTGGGAATGAA--C---TGC----A-T----ATG---
390 GCAA-CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGGAATGAAC
* * * * *
17165673 --C---T---TAAGTCAACCCACGAAACAAGCGCGCGGGCGCTCAGTCGGCCAGAGGGGCGGGAT
454 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGTGGGAT
* ** * * *
17165730 GCGTAAGCCGGGGATCGG-AAGGTCCCCCTCTACGTGCTGTCGATCCTACTGCCACAACCCTCAT
519 GCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTCAG
* * * * * * *
17165794 TTCGTTCTGATCTTAGACTGGGAATGAACTTCATATGCCTAAGCCAGCCGACGAAACGAGTGAGC
584 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* ** * * ** *
17165859 GGGCAGGTTGGCGGGCACTACGCTGGCTAGAGAGACAAGATGCGCAAGCTGTGGATCGATAGGGT
649 GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* ***
17165924 GATAGGTGGGTTTAGGCACATCTTCATATTTCTTTGTGCCAATGCCATTTTTATGGCTTGTAAAT
714 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
*
17165989 TCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
779 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * * *
17166054 AACGATTTTTGAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTCGAAGGTGTT
844 CACGATTTTTGAAACTTTTT-TGCTTCGA-GATTTTTTAAAATTTTTTGGAAGGAGTT
* * * *
17166111 TTGGCCCCAAACATGGTAGACGTGATCCGTGTATTTTTGTTGGCAAGCACAAAAAAGTTCAGCTA
1 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * *
17166176 AAAACTCGAAGTGTAAAAGATCTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAA
66 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
17166241 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
131 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * *
17166306 TGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACCAGCACCCATCCCACATCATGTGTGCAC
196 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * *
17166371 A-CCCCCAG-CCCCCCGATCGTCGGAA-CCCAATGCCGCCGGTCAGGTTCTCCGGCGATGATCCG
261 ACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG
* * * *
17166433 ATGATGGTGCCCCGACGAAGAAAAATGCGACACCAGTACATGCCCGAGCCCAGCATGTGCTACCG
326 ACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCG
* *
17166498 AAACCT---T-T-G---G----T---CT-GG--T---CT-G-AT-CTTATACTGGGAATGAACTC
391 CAACCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGGAATGAACTC
* * * * *
17166539 CGTATGCTTAAGTCAACCCACGAAACAAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
456 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGTGGGATGC
* * * * * **
17166604 GTAAGCTGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCCTGC--CCGTAACCCTCAGTC
521 GCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTCAGTC
* * * * *
17166667 CGGTCTGATCTTCGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAATGAGTGGGTGG
586 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
* * * * *
17166732 GCAGGCGGGCGGGCACTACGCCGGCGAGGGAGACAGGATGCGTAAGCCGTGGATCGATAGGGTGG
651 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
*
17166797 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTC
716 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* * * *
17166862 ATGCAATGGTCCCTTAAGCCATCACGT-AACGTTTCATGGCAAGATGACTCCTTTTCTATTTTTC
781 ATACAATGGTCCCTTAAGCCTTCACGTGAA-GTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * *
17166926 ATGATTTTTGAAACTTTTTGTGGTTCGAGATTTTTAAAAATTCTTTCGGAAGGATTT
845 ACGATTTTTGAAACTTTTT-TGCTTCGAGATTTTTTAAAATT-TTTTGGAAGGAGTT
* * *
17166983 TTGGCCCCAAACTTGGTAGACGTGATCCTTGCATTTTTTTTGGCATGCATAAAAAAAATTCAGCT
1 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAAATTCAGCT
*
17167048 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTA
65 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
17167113 ATGGCCATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
130 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * * *
17167178 TTTATGAGAGATAGGGGGCCAATATAAGGGACAAGTACCAGCACCCATTGCACATCATGTGCGCA
195 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * *
17167243 CATCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCC
260 CACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC
** * * * *
17167308 GGTGATGGTGCCCCGACAAAGAAAAATGTGGCACCAACACATGCTCGAGCCCAGCATGTGCTGCC
325 GACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACC
* * *
17167373 GCAACACTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCTATATCCTTAGACTGGGAATGAA
390 GCAAC-CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTC-GTATGCTTAGACTGGGAATGAA
* ** * * *
17167438 CTCCATATGCCTAAGTCAACCCATAAAACGAGCGTGTGTGTGCTCAGCCGGCCAGAGTGGTGGGA
453 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGTGGGA
* * * * * * * * *
17167503 TGCACAACCCAGGGATCGGTAGGGTCCTCCTTTGCGTGCTGTCGATCCTGCTGCCACAACCCTCG
518 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTCA
** ** *
17167568 GTCCGGTCCAATCTTAGACTATGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGA----G
583 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * * * *
17167629 CAGGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGCATGCGCAAGTCGTGGATTGATAGGG
648 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * *
17167694 TTGTAGGTGGGTTTACGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTGTGGCTTGTAAA
713 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* *
17167759 TTCATACAATGGTCGCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATTTT
778 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * * * *
17167824 TCACGATTTTTTAATCTTTCTACTG-TTTGGGATTTTTTAAAATTTTTTCGGAATGAATT
843 TCACGATTTTTGAAACTTT-T-TTGCTTCGAGATTTTTTAAAATTTTTT-GGAAGGAGTT
* *
17167883 TTGGCCCCATACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTA
1 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
17167948 AAAGCTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
66 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
17168013 TGGCTACTGGCAGTAAACCTGTAAAACCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
131 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * *
17168078 TGATGAGGGATAGGGGG-C----T-A-----AA-TACCAGCACCCATCACCCATCATGTGTGCAT
196 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC--
* * * *
17168131 ACCCCCCCTCGGCCCCCCCGATCGTTGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCT
259 ACACCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
* * * * *
17168196 GCGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAACACATGCCCGAGCCCAACATGTGCTA
323 CCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA
* * * * *
17168261 CCGCAACCCTCGGCCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGAAATA
388 CCGCAA-CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACT-CGTATGCTTAGACTGGGAATG
* * ** *
17168326 AACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGTAGGTGCTCAGCCGGCCAGAGGGGCGG
451 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGTGG
* * * *
17168391 GATGTGCAAGCCGGCGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCT
516 GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCT
* ** ** * *
17168456 CGGTCCGGTCTGATCTTAGACTAAGAATGAACTTTGTATGCCTAAGCCAACTGACGAAACGAGCA
581 CAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * * *
17168521 GGCGGGCGGGCAGGCGGGCACTACACCGGCCAAAGAGATGGGATGCGCAAGCCGTGGATCGATAG
646 GGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * * *
17168586 TGTGATAGGTGGGTTTCGGAACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
711 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* * *
17168651 AATTCATACAGTAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATT
776 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * *
17168716 TTCCATGATTTTTGAAAC-TTTTTACAGTTC-AGGACTTTTTAAAATTTTTTTGGAAGGAGTT
841 TTTCACGATTTTTGAAACTTTTTTGC--TTCGA-GATTTTTTAAAA-TTTTTTGGAAGGAGTT
* * *
17168777 TTGGCCCCAAACTTGGTATACGTGATCCTGGAATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
1 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
17168842 AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
66 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * *
17168907 TGGCTACTGGCAGCAAACCTATAAAATGTCAAATGCTCTTTAAGAGGGTGTGAGTTCTTGAGGTT
131 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
17168972 TGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCACATCATGTGCACAT
196 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-
* ** * * *
17169037 AACCCCTCC-G-CCCCCCGATCACCGAAACCCTAATGCCGTCGATCAGGTTCTCCGACGATGCTC
260 CACCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC
* * *
17169100 CGACGATGGTGCCCCGACGAAGAAAAATGTAGCACCAACACATGCCCGAGCCCAGCATGTCCTAC
324 CGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
* * **
17169165 CCCAA-C-C---C---TCAG-TC-----C--GG--T---C-CG-AT-CTTAGACTGCAAATGAAC
389 CGCAACCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGGAATGAAC
* * *
17169206 TCCGTATGCCTAAGTCCACCCACGAAACGACCGTGCGGGTGCT-ATGCCGACCAGAGGGGCT-GG
454 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCA-GCCGGCCAGAGGGG-TGGG
* * * * *
17169269 ATGCGCAAGCCAGGGATCGGTTGGGTCCCCCTCTGCATGCTACCGATCCTACTGCCAGAACCCT-
517 ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTC
* * * * *
17169333 TGCTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGATGAAACGAGCG
582 AG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
*** * * * *
17169398 GGCGATTGGGTGGGCGGGCACTACGCCGACCAGAGAGACGGGATGTGCAAGCCGTGGATCAATAG
646 GGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
17169463 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
711 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* * * * *
17169528 AATTCATAAAATGGTCGCTTAAGCCTTCACGTGAAGTTTCATGGTAGGACGACTTGTTTTCTATT
776 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
17169593 TTTCACGATTTTTGAAAC-TTTTTGCAGTTCGAGATTTTTT-AAATTTTTTCGGAAGGAGTT
841 TTTCACGATTTTTGAAACTTTTTTGC--TTCGAGATTTTTTAAAATTTTTT-GGAAGGAGTT
* * * *
17169653 TTGGCCCC-AACTTGGCATACGTGATCCTTGTATTTTT-TTTGCAATGCATAAAAAAATTCAGCT
1 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC-ATGCACAAAAAAATTCAGCT
* *
17169716 AAAAAGTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
65 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
17169781 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
130 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG-
*
17169846 TTGTTGAGGGATAGCAGGCCAATATGAGGGCCAAGTACCAGCACCCATTGCACAATATGAGGGCC
194 -T-TT----GAT-G-AGG--GATA-G-GGG----G---C--CA---A-T-----ATA--AGGGCC
* * * *
17169911 AAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGACCCCCTGATCGTCGGAACCCC
227 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCC
* * *
17169976 AATGCCGTCGGTCAGGTTCTCC-AGCGATGCTCCGACGATGGTGCCCTGACAAAGAAAAATGCGG
292 AATGCCGTCGGTCAGGTTCTCCGA-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGG
* * * ** *
17170040 CACCAACACATGCCTGAGCCCAGCATGTGCCACCTTAA--TC---C---T-CG--GTT---C---
356 CACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCTCGGTCTGGTCCGATCTTAGACTGG
**
17170088 G-ATG--C-CG-AT-CTTAGA-TCGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAG
421 GAATGAACTCGTATGCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * ** *
17170146 CGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGTCGGGGATTAGTCGAGTCCCCCTC
485 CGTGCGGGTGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
* * * *** * * * *
17170211 TTG-GTGCTGTCGATGCTGCAATCGCAACCCTCGGTCCGTTCTGATCTTATACTGGGAATGAACT
550 -TGCGTGCTGCCGATCCTACTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACT
* *
17170275 CCGTATGCCTAAGCCAACCGACGAAACGAACGGACGGGCGGGCGGGCG
614 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCG
17170323 CTACGTCTAA
Statistics
Matches: 6704, Mismatches: 835, Indels: 428
0.84 0.10 0.05
Matches are distributed among these distances:
852 1 0.00
853 2 0.00
855 2 0.00
856 2 0.00
857 1 0.00
859 1 0.00
861 3 0.00
863 1 0.00
866 2 0.00
867 256 0.04
868 262 0.04
869 151 0.02
870 79 0.01
871 351 0.05
872 292 0.04
873 279 0.04
874 261 0.04
875 193 0.03
876 118 0.02
877 389 0.06
878 189 0.03
879 10 0.00
880 5 0.00
881 3 0.00
882 5 0.00
883 1 0.00
884 4 0.00
885 4 0.00
886 8 0.00
887 29 0.00
888 7 0.00
889 10 0.00
890 327 0.05
891 6 0.00
892 5 0.00
893 15 0.00
894 519 0.08
895 214 0.03
896 2 0.00
897 5 0.00
898 8 0.00
899 403 0.06
900 306 0.05
901 322 0.05
902 192 0.03
903 118 0.02
904 689 0.10
905 267 0.04
906 34 0.01
907 17 0.00
908 148 0.02
909 182 0.03
910 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
ACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG
ACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCG
CAACCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGGAATGAACTC
CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGTGGGATGC
GCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTCAGTC
CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
CGATTTTTGAAACTTTTTTGCTTCGAGATTTTTTAAAATTTTTTGGAAGGAGTT
Found at i:17164790 original size:26 final size:26
Alignment explanation
Indices: 17164752--17164807 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
17164742 CTAGTCCAAT
** *
17164752 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCGTACG
*
17164778 CTTAGACCAGGAATGAATTCCGTACG
1 CTTAGACCAGGAATGAACTCCGTACG
17164804 CTTA
1 CTTA
17164808 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTCCGTACG
Found at i:17167431 original size:26 final size:26
Alignment explanation
Indices: 17167395--17167445 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17167385 CTGATCCGAT
*
17167395 CTTAGACTGGGAATGAACTCTATATC
1 CTTAGACTGGGAATGAACTCCATATC
17167421 CTTAGACTGGGAATGAACTCCATAT
1 CTTAGACTGGGAATGAACTCCATAT
17167446 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATC
Found at i:17168314 original size:26 final size:26
Alignment explanation
Indices: 17168285--17168337 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17168275 CCGGTCCGAT
* * *
17168285 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATAAACTCCGTATG
*
17168311 CTTAGACTGGAAATAAACTCTGTATG
1 CTTAGACTGGAAATAAACTCCGTATG
17168337 C
1 C
17168338 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATAAACTCCGTATG
Found at i:17169907 original size:33 final size:33
Alignment explanation
Indices: 17169865--17169932 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
17169855 GATAGCAGGC
17169865 CAATATGAGGGCCAAGTACCAGCACCCATTGCA
1 CAATATGAGGGCCAAGTACCAGCACCCATTGCA
17169898 CAATATGAGGGCCAAGTACCAGCACCCATTGCA
1 CAATATGAGGGCCAAGTACCAGCACCCATTGCA
17169931 CA
1 CA
17169933 TCATGTGCGC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.34, C:0.31, G:0.21, T:0.15
Consensus pattern (33 bp):
CAATATGAGGGCCAAGTACCAGCACCCATTGCA
Found at i:17170763 original size:26 final size:26
Alignment explanation
Indices: 17170734--17170786 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17170724 CTGGTCCGAT
*
17170734 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17170760 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17170786 C
1 C
17170787 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17171646 original size:26 final size:26
Alignment explanation
Indices: 17171617--17171669 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17171607 CTGGTCCGAT
17171617 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17171643 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17171669 C
1 C
17171670 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17173901 original size:26 final size:26
Alignment explanation
Indices: 17173871--17173923 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17173861 CTGGTCCGAT
* *
17173871 CTTAGACTGGGAATGAAGTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17173897 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17173923 C
1 C
17173924 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17175638 original size:26 final size:26
Alignment explanation
Indices: 17175609--17175660 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17175599 CGGTCCGATT
*
17175609 TTAGACTGGGAATCAACTCCGTATGC
1 TTAGACGGGGAATCAACTCCGTATGC
*
17175635 TTAGACGGGGAATGAACTCCGTATGC
1 TTAGACGGGGAATCAACTCCGTATGC
17175661 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (26 bp):
TTAGACGGGGAATCAACTCCGTATGC
Found at i:17177404 original size:26 final size:26
Alignment explanation
Indices: 17177375--17177427 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17177365 CCGATATGAT
17177375 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17177401 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17177427 C
1 C
17177428 CTAAGTCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17178329 original size:26 final size:26
Alignment explanation
Indices: 17178278--17178329 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17178268 CCAGTCTGAT
* *
17178278 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
17178304 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
17178330 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17178609 original size:903 final size:900
Alignment explanation
Indices: 17174227--17184635 Score: 13779
Period size: 903 Copynumber: 11.6 Consensus size: 900
17174217 TGCCATTTTT
* * * ** *
17174227 ATGGCCAGACAACTCGTTTCCTATTTTTCACGATTTTCAAAAC-TTTTGCGGTTCGAGTTTTTTT
1 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTT
** * * *
17174291 AAAATTTTTTCGGAAGGAGTTTTGGTGCCAAACTTGATAGTCGTGATCCTTGTATTTTTTTTGGC
66 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * * *
17174356 ATGCACAAAAAAATTGAGCTAGAAGCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAATAGTG
131 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * *
17174421 TCCCCATTTCAAAAACTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
196 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * * * *
17174486 GGGGTGTGAGTTTTCAAGGTTTGATGAGGGATTGGGGGCCAATATAAGGGCCAGGTACCACCACC
261 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * *
17174551 CATCGCACATCATGTGTG--CACCCCCCGGCCCCCCCGATTGCCGGAACCCCAATGTCGCCGGTT
326 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTC
17174614 AGGTTCT-C--CGA--------CGATGGTGCCCC-AGCGAAGAAAAATGCGGCACCAGCACATGC
391 AGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGC
* * * * *
17174667 CCGAGCCCAGCATGTGCTGCCCCAACCCTCGGTCCAGTCTGATCTTAGACCGAGAATGAACTTCG
455 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG-GAATGAACTCCG
* * * **
17174732 TATGCTTTGACTGTGAATGAACTCCGCATGCCTAAGTCAACCCATGAAACGAGCGTGCTAGCGCT
519 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCT
** * * *
17174797 CAGTTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGGGTGATGCCG
584 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GACGGGTCCCCCTCTGCGTGCTGCCG
* ** * * *
17174862 ATCTTGCTTTCACAACCCTCAGTCTGGT-TCGATCTTAGACTGGGAATGAACTCTGTATGCCTAA
648 ATCCTGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTAGGAATGAACTCTGTATGCCTAA
* * * * *
17174926 GCCAACCGACG-GA-A-CGAGCGGGCGGGTGGGCGGGCACTACGTCGGCCTGAAAGACGGGATGC
712 GCCAACCGACGAAACAGCGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * * * * *
17174988 GCAAGTCATGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATACTTCTACGTGCCAAT
777 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
17175053 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
842 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* *
17175112 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAAAATTTTTT
1 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTT
* * *
17175177 AAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCATGTATTTTTGTTGGC
66 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
17175242 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTG
131 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
*
17175307 TCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
196 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
17175372 GGGTGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGGGCCAACATAAGGGCCAAGTACCAGCAC
261 GGG-GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * ** **
17175436 CCATCGCACATCATGTGCGCAC-CCCCCCGGCCCCCCCAATCACCGGAACCTCAATGCCACCCAT
325 CCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGT
* * * * ** * *
17175500 TAGGTTCTCTGGCGACGCTCCAGCGATGGTGCCCCGGGGAAGGAAAATGTGGCACCAGCACATGC
390 CAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* * * * *
17175565 TCGAGCCCAGCATGTGCTACCCCAACCCTCGGTCCGGTCCGATTTTAGACTGGGAATCAACTCCG
455 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT-GGAATGAACTCCG
* * *
17175630 TATGCTTAGACGGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCT
519 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCT
* * * * * * *
17175695 TAGCCGGCCAGAGGGGCGGGATGCGTAATCCGGGGACCGATCGGGTCCCCCTCTGTGTGTTGCCA
584 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CGGGTCCCCCTCTGCGTGCTGCCG
* * *
17175760 ATCCTACTGCCGCAACCCTCAGTC-GGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
648 ATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAG
* * * *
17175824 CCAACCGACAAAACGAGCGGGCTGGCGGGCGGGCGGGCACTACCCCGGCCAGAGAGACGGGATGC
713 CCAACCGACGAAAC-AGCGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
*
17175889 GCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
777 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* *
17175954 ACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACTTGAAGTTTC
842 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* ** **
17176013 ATGGCAAGACGACTCGTTGTCTATTTTTCACGAAATTCAAAACTTTTTGCGGTTCGAGATTTTTT
1 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTT
* * *
17176078 AAAATTTTTTCGAAAGGAGTTTTGGCCTCGAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
66 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* *
17176143 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTCACCATTTGAAAAAAATG
131 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
17176208 TCCCCATTTCTGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAG
196 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
17176273 GGGGTGTGAGTTCTCGAGGTTTTATGAGGGATAGGGGGCCAATATAAGGGCCAATTACCAGCACC
261 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * *
17176338 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGTCGTCGATC
326 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTC
* * * * *
17176403 AGG-TCTCCGGGGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATACGACACCAGCACATGCC
391 AGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * * * *
17176467 CGAGCCCAGCATGTGTTACCACAACCCTCGGTCCGATCCGATCTTAGACCGG---G-A------A
456 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGAATGAACTCCGTA
* * * *
17176522 TG---A-ACT-----TG------GTATGCCTAAGTCAACTCATGAAATGAACGTGCGGGCGTTCA
521 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
* ** * * *
17176572 GCCGGCCAGAAGAACGGGATGCGTAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCTAT
586 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CGGGTCCCCCTCTGCGTGCTGCCGAT
* * * * *
17176637 CCTGCTGCCGCAACCCTCGGT-TCGATCCGATATAAGACTAGGAATGAACTCCGTATGCCTAAGC
650 CCTGCTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGC
* ** * * *
17176701 TAATGGAC-AGAACGAGCGAGCGGGCGGGCGGGCGGGCACTATGCCAGCCAGAGAAACGGGATGC
714 CAACCGACGA-AAC-AGCGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * *
17176765 GCAAGCCATTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATGTTTCTGCATGCCAAT
777 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* * * * *
17176830 GCTATTTTGATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTCCAGGTGAGGTTTC
842 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * * *
17176889 ATGGCAAGACGACTCGTTTTCCATTTTTCATGATTTTCGAAACTTTTTGTGGTTCGGGATTTTTT
1 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTT
* **** *
17176954 AAAATTTTTTCGAAAGGAGTTTTGGTATTAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGC
66 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * * *
17177019 ATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTTCAATATTTTCTGACCATTTGAAAAAAGTG
131 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * * * *
17177084 TCCCCATTTCTGACACTTTAATAGCTATTGGCAGCAAACCTGTAAAATCTCGAATGCTTTTTAAG
196 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
** * *
17177149 GGGGTGTGAGTTCTTTAGGTTTTATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACC
261 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * * * ***
17177214 CATCGCACATCACGTGCGGACACCCCCCGGCCCCCTCGATCGTCGAAAACCCAATGCTACCGGTC
326 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTC
* *** *
17177279 AGG-T-T----C--T--T-CGACGATGGTGCCCCGACGAAGAAAAATGTAACACCAGCACATGCT
391 AGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* **
17177333 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATATGATCTTAGACTGGGAATGAACTCCGT
456 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT-GGAATGAACTCCGT
* *
17177398 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAATCCATGAAACGAGCGTACGGGCGCTC
520 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTC
*** * * * *
17177463 AAATGGCCAGAGGGGCGAGATGCACAAGCCGGGAATCGACCGGGTCCCCCTCTGCGTGCTGCTGA
585 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CGGGTCCCCCTCTGCGTGCTGCCGA
* * * * * * *
17177528 TCTTGCTGCCACAACCCTCGGTCTGGTCTGATCTTATACTGGGAATGAACTCCGTATACCTAAGA
649 TCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGC
* * * * * * *
17177593 CAACCGATGACACAGCGGGCGGGTGGGCGGGCGGGCACTTCACCGACCAGAGAGACGGGATGCGC
714 CAACCGACGAAACAGCGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
17177658 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGT
779 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
17177723 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTC
844 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* ** * *
17177780 ATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTT
1 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTT
* * * * *
17177845 AAAAGTTTTTCGGAAGGAGTTTAGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTTTTGCC
66 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* *
17177910 ATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTT
131 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
*
17177975 TCCCCATTTCAGACACTTCAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
196 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * * *
17178040 AGGGTGTGAGTTCTCGAGGTTTGATGAGCGATAGGGGGCCAATATGAGGGCCAAGTACCAGCCCC
261 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * *
17178105 CATCGCACAACATGTGCGCACACCCCCCCGACCCCCCCGATCGTCAGAACCCCAATGTCGTCGGT
326 CATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGT
* * *
17178170 CAGGTTCTCCGGAGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGC
390 CAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* * * * * *
17178235 CTGAGCCCAGCATGTGCTGCCGTATCCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTTCG
455 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT-GGAATGAACTCCG
* * * * **
17178300 TATGCTTAGACTGGGAATGAACTCCATATGGCTAAGTCAATCCATGAAACGAGCGTACAAGCGCT
519 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCT
* * * * * *
17178365 CAGCCGACCGGAGGGGCGGGATGCACAAGCCGGGGATCGACATGGTCCCCCTCTGTGTGCTGCTG
584 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAC-GGGTCCCCCTCTGCGTGCTGCCG
* *
17178430 ATCCTGCTGCCGCAACCCTTGGTCTGGTCTAATCTTAGACTAGGAATGAACTCTGTATGCCTAAG
648 ATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAG
* * * ** * * * * *
17178495 CCAACCGATGAAACAACGGGCGGATGGGCTGGCGGGCACTAGGTCGGCTAGAGAGACGGTATGCG
713 CCAACCGACGAAACAGCGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * * *
17178560 CAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTGGGCACATTTTCATATTTCTGTATGCCAATG
778 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* * *
17178625 CCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCCTCAAGTGAAGTTTC
843 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
*
17178683 ATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-AGGATTTTT
1 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGA-GATTTTT
* * * * * * *
17178747 TAAAATTTTTTCGGATGGTGTTTTGGCCCC-AACCTGGTAGACATGATCCCTGTATTTTTTTTGC
65 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* *
17178811 CATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGT
130 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* *
17178876 GTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAA
195 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * *
17178941 GGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGGGGCAAATATAAGTGCCAAGTACCAGCAC
260 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * ** * * *
17179006 CAATCACACATCATGTGCGCACACCCTCCCCGGCCCCTTCGATCGTCGGAACACCAATGCCGTCA
325 CCATCGCACATCATGTGCGCACA-CC-CCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCG
* *
17179071 GTCAGGTTCTCCGGCGATGGTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
388 GTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
* * * *
17179136 GCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGT-CAGTCCGATCTTAGACTGGCACTGAACTT
453 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG-AATGAACTC
* * *
17179200 CGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTGAACCCATGAAACGAGCGTGCGGGTG
517 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCG
* * * * * *
17179265 CTCAGTCGACCAGAGGGGTGGGACGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGC
582 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GACGGGTCCCCCTCTGCGTGCTGC
* *
17179330 CGATCCTGTTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTA
646 CGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTA
* * * *
17179395 AGGCAACAGACG-AA-A-CGA----GCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGAATG
711 AGCCAACCGACGAAACAGCGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* *
17179453 CGCAAGCCGTGGATCGATAGGCTGGTAGGTGTGTTTAGGCACATCTTCATATTTCTGCATGCCAA
776 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* *
17179518 TGCCATTTTTATGGCTTGTAAATCCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTC
841 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * *
17179578 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAATTTTTGCTGTTCGAGATTTTTT
1 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTT
* * * *
17179643 GAAATTTTTTTGGAAGGA-TTTTCGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGG
66 AAAATTTTTTCGGAAGGAGTTTT-GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
*
17179707 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAT
130 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
** * * * *
17179772 ACCCCCATTTCAGACACTTAAATGGCTACTAGCAGCAAACCTGTAAAATCTCGATTGCTCTTTAA
195 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
17179837 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGTCAATATAAGGGCCAAGTACCAGCAC
260 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* ** * *
17179902 CCATCGCACATCATGTGCGCACACCCCCCGG--CCCACGATCGCCAAAACCCCAATGTCGTCGAT
325 CCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGT
* * * * *
17179965 CAGGTTCTCTGGTGATGCTCCGGCGATGGTGCACCGACGAAGAAAAATGCGGCACCAGTATATGC
390 CAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* * * * * *
17180030 CTGAGCCTAGCATGTGCTGGCGCATCCCTCGGTCTGATCCGATCTTAGACTGGAAATGAACTCCG
455 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG-AATGAACTCCG
* * * *
17180095 TATGCTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCT
519 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCT
* * * * * * * * * * *
17180160 CAACTGACTAGA-GGGCGGCATGTTC-CAA-CCGAGGATTGGCAAGGTCCCCCTCTGTGTGCTAC
584 CAGCCGGCCAGAGGGGCGGGATG--CGCAAGCCGGGGATCGAC-GGGTCCCCCTCTGCGTGCTGC
** * *
17180222 CGATCCTGCTATCGCAACCCTCGATCTGGTTTGATCTTAGACT-GTGAATGAACTCTGTATGCCT
646 CGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAG-GAATGAACTCTGTATGCCT
* * * *
17180286 AAGCCAAACGACGAAACGAGCGAGCGGGTGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGA
710 AAGCCAACCGACGAAAC-AGCGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * *
17180351 TGCGCAAGACATGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
774 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
* * *
17180416 AATG-CAATTTTATGCCTTGTAAATTCATACAATGGTTCCTTAAGCCTTCACGTGAAGTTTC
839 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
*
17180477 ATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGAGATTTTTT
1 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTT
* *
17180542 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTGTTGGT
66 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
17180607 GTGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
131 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
17180671 TCCCCATTTTAGACAATTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
196 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
17180736 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
261 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* *
17180801 CATCGCACATCATGTGCGCACA---------CCCCCCGATCGCCGGAACCCTAATGCCGCCGGTC
326 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTC
* * *
17180857 AGGTTCTCCGGTGATGCTCTGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
391 AGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * *
17180922 CGAGCCCAGCATGTGCT-CTCACAACCCTCGGTCTGGTTCGATCTTAGACTGGAAATGAACTCCG
456 CGAGCCCAGCATGTGCTGC-CGCAACCCTCGGTCCGGTCCGATCTTAGACTGG-AATGAACTCCG
* * * *
17180986 TATGCTTAGACTGGGAATGAACTCTGCATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTT
519 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCT
** * * * * *
17181051 CAGCCGGCCAGAGGGGCCAGATGTGCAAGTCGGGGATCGATCAGGTCCCCCTATGCGTGCTACCG
584 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CGGGTCCCCCTCTGCGTGCTGCCG
* * * * * * * *
17181116 ATCCTGCTACCACAACCCTCAGTCGGGTTTGTTCTTAGACCAGGAATGAACTCTATATGCCTAAG
648 ATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAG
* * * * *
17181181 CCAACCGATGAAACGAGCGGGCGGACGGGCGGGTGGGCAGGCACTATGCCGGCCAGAGAGACGGG
713 CCAACCGACGAAAC-AGC--G-AG-CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* * * *
17181246 ATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTACGTACATCTTCATATTTCTTCATGC
773 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* *
17181311 CAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
838 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * *
17181374 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCGAGATTTTTT
1 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTT
*
17181439 AAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
66 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
17181504 ATGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTG
131 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * * *
17181568 TCCCCATTGCAGACAATTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAG
196 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * * * * *
17181633 GGGATGTGAGTTTTCAAGGTTTGATGAGGGATTGGGGGCCAATATAAGGGCCAACTACCAGTACC
261 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * *
17181698 CATGGCACATCAAGTGCGCACACCCCCCGG-CCCCCTGATCGCCAGAACCCCAATGCCATCGGTC
326 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTC
*
17181762 AGGTTCTCCGGCGATGCT-C--C------G----G-CGAAGAAAAATGCAGCACCAGCACATGCC
391 AGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * * * *
17181813 CGAGCCCAACATGTGCTGTCGCAACCATCGGTCTGGTCCGATCTTAAACTGCGAATGAACTCCGT
456 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG-GAATGAACTCCGT
* * *
17181878 ATGCTTAGACTGGGAATGAACTCCGTATGCCCAAGTCAACCCATGGAACGAGCGTGCGGGCCCTC
520 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTC
* * * ** * * *
17181943 AGCCAGCTAGTGGGGCAAGATGCGCAAGCCAGGGATTGGCTGGGTCCCCCTCTGCGTGCTGCCGA
585 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAC-GGGTCCCCCTCTGCGTGCTGCCGA
** * * * * *
17182008 TCCTGCTGCCGCAACCCTCAATCTGGTCCGATCTTAGATTGGGTATGAACCCTGTATGCCTAAGC
649 TCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGC
* * * * *
17182073 CAACCGACG-AA-A-CGAGCAGACGGG-TGGC---CACTACGTCGGCCAGAGAGACGAGATGCGC
714 CAACCGACGAAACAGCGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
17182131 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
779 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
17182196 CATTTTTATGACTTGTAAATTCATACCATGGTCCCTTAAGCCTTCACGTGAAGTTTC
844 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* *
17182253 ATGGCCAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGAGATTTTTT
1 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTT
* *
17182318 AAAATTTTTTCGGAAGCAGTTTTGGCCCCAAACTTGGTAG-CAGTGATCCTTGTATTTTTTTTGG
66 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC-GTGATCCTTGTATTTTTGTTGG
** * * *
17182382 TGTGCACAAAAAATTTCAGCTAAAAATTCGAAGTGAACAAGATTTTGTGACCATTTGAAAAAAGT
130 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
17182447 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
195 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
17182512 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCAC
260 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * * * *
17182577 CCATCGCACATCATGTGCGCACAACCCCCGGCCCCACCAATCGTCGGAACCCCAATGTCGCCGAT
325 CCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGT
* * *
17182642 CAGGTTCTCTGGCGATGCTCCGGGGACGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
390 CAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* *
17182707 CCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCG
455 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT-GGAATGAACTCCG
* * *
17182772 TATGCTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCT
519 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCT
* ** * * **
17182837 CAGCAGGCCAGAGGGGAAGGATGCGCAAGTCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGGTG
584 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CGGGTCCCCCTCTGCGTGCTGCCG
* * * * *
17182902 ATCCTGCTACCGCAACCCTCGGTCTGCTAC-AATCTTAGACTGGGAACGAACTCTGTATGCCTAA
648 ATCCTGCTGCCGCAACCCTCGGTCTGGT-CTGATCTTAGACTAGGAATGAACTCTGTATGCCTAA
* * ** * ** * *
17182966 GCCAACCGAAGAAACAAGCAAGCGGGCAAGCGGGCGAGCACTACATCGACCAGAGGGACGGGATG
712 GCCAACCGACGAAAC-AGCGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* * * *
17183031 CGCAAGCTGTGGATCGATACGGTGGTAGGT-GGTTTAGGCACAACTTCATATTTCTGCCTGCCAA
776 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
*
17183095 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCATAAGCCTTCACGTGAAGTTTC
841 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* ** *
17183155 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTT
1 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTT
* ** * *
17183220 AAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTAATAGACGTGATCCTTGTCTTTTTTTTGGC
66 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * * *
17183285 ATGGACAAAAAAATTCAGCTAAAAGCTTGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTG
131 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
*
17183350 TCCCCATTTCAGACACGTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
196 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
17183415 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGGCCAATATAAGGGCCAAGTACCAGCAC
261 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * * * *
17183480 CCATCGCACATCATGTGCGAACACCCCCCGGCCCCACCAACCGTCGGAACCTCAATGCCGTCGAT
325 CCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGT
* * * *
17183545 CAGGTTCTTCGGCGATGCTCCGGGGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGC
390 CAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* *
17183610 CCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
455 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT-GGAATGAACTCCG
*
17183675 TATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCT
519 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCT
* * * * * **
17183740 CAGCAGGCCAGAGGGGCAGGATGCGCAAACCGGAGATCGATCGGGTCCCCCTCTACGTGCTGGTG
584 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CGGGTCCCCCTCTGCGTGCTGCCG
* * * *
17183805 ATCCTGCTACCGCAACCCTCGGTCTGGTAC-AATCTTAGACTGGGAACGAACTCTGTATGCCTAA
648 ATCCTGCTGCCGCAACCCTCGGTCTGGT-CTGATCTTAGACTAGGAATGAACTCTGTATGCCTAA
* * * * * * *
17183869 GCCAACTGATGAAACAAGCGAGCGGGTGAGCCGGCGGGCACTACACCGGCCAGAGGGACGGGATG
712 GCCAACCGACGAAAC-AGCGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* * * * *
17183934 CGCAAGCTGTGGATCGATAGGGGGGTAGGT-GGTTTACGCACATCTTCATATTTCTACGTGCCAA
776 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
*
17183998 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
841 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * * *
17184058 ATGGCAAAACGACTTGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTACGGTTCGGGGCTTTTT
1 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-GAGATTTTT
* * *
17184122 GAAAATTTTTTC-GAGAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGGTG
65 TAAAATTTTTTCGGA-AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
17184186 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
129 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
*
17184251 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTA
194 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * *
17184316 AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGTCAAGTACCAGCA
259 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
** ** * * * *
17184381 CCCATCGCACATC-TGCACGCACACCCCCCAACCCCCCTGATCGTCGGAACCCGAATGCCGTCAG
324 CCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGG
* * * * **
17184445 TCAGGTTCTCCAGCGATGCTCCGGGGATGCTGCCCCGACGAAGAAAAAAGCGGCACCAAAACATG
389 TCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
** ** * *
17184510 CTTGAGCATAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACACC
454 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG-GAATGAACTCC
* * ** *
17184575 GTATGCTTAGACTAGGAATGAACTCCTTATGCCTAAGTCAACCCACAAAATGAGCGTGCGG
518 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGG
17184636 TCCCCATCTA
Statistics
Matches: 8407, Mismatches: 970, Indels: 278
0.87 0.10 0.03
Matches are distributed among these distances:
866 85 0.01
867 3 0.00
869 1 0.00
870 1 0.00
871 1 0.00
875 112 0.01
876 559 0.07
877 3 0.00
878 1 0.00
879 264 0.03
880 202 0.02
881 47 0.01
882 4 0.00
883 6 0.00
884 1 0.00
885 39 0.00
886 248 0.03
887 72 0.01
888 2 0.00
890 10 0.00
891 931 0.11
892 497 0.06
893 103 0.01
894 14 0.00
895 485 0.06
896 337 0.04
897 422 0.05
898 423 0.05
899 182 0.02
900 138 0.02
901 754 0.09
902 890 0.11
903 1524 0.18
905 46 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTT
AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTC
AGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGAATGAACTCCGTA
TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACGGGTCCCCCTCTGCGTGCTGCCGATC
CTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCA
ACCGACGAAACAGCGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
Found at i:17180102 original size:26 final size:26
Alignment explanation
Indices: 17180073--17180122 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17180063 CTGATCCGAT
17180073 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
17180099 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGAAATGAACTCCGTA
17180123 AGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:17181016 original size:26 final size:26
Alignment explanation
Indices: 17180964--17181016 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17180954 CTGGTTCGAT
*
17180964 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGCATG
* *
17180990 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGAAATGAACTCCGCATG
17181016 C
1 C
17181017 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGCATG
Found at i:17181884 original size:26 final size:26
Alignment explanation
Indices: 17181855--17181907 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17181845 CTGGTCCGAT
17181855 CTTAAACTGCGAATGAACTCCGTATG
1 CTTAAACTGCGAATGAACTCCGTATG
* *
17181881 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGCGAATGAACTCCGTATG
17181907 C
1 C
17181908 CCAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGCGAATGAACTCCGTATG
Found at i:17182779 original size:26 final size:26
Alignment explanation
Indices: 17182750--17182802 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17182740 CTGGTCCGAT
17182750 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
17182776 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17182802 C
1 C
17182803 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17183682 original size:26 final size:26
Alignment explanation
Indices: 17183653--17183705 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17183643 CCGGTCCGAT
17183653 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17183679 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17183705 C
1 C
17183706 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17184593 original size:26 final size:26
Alignment explanation
Indices: 17184554--17184606 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17184544 CCGGTCCGAT
17184554 CTTAGACTGAGAATGAACACCGTATG
1 CTTAGACTGAGAATGAACACCGTATG
* *
17184580 CTTAGACT-AGGAATGAACTCCTTATG
1 CTTAGACTGA-GAATGAACACCGTATG
17184606 C
1 C
17184607 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACACCGTATG
Found at i:17185436 original size:26 final size:26
Alignment explanation
Indices: 17185396--17185448 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17185386 CCAGTCTGTT
* *
17185396 CTTAGACTGGTAATGAACGCCGTATG
1 CTTAGACGGGGAATGAACGCCGTATG
*
17185422 CTTAGACGGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACGCCGTATG
17185448 C
1 C
17185449 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACGCCGTATG
Found at i:17187216 original size:26 final size:26
Alignment explanation
Indices: 17187180--17187232 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17187170 CGGGTCCAAT
17187180 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17187206 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17187232 C
1 C
17187233 CTAAGTCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17188111 original size:25 final size:25
Alignment explanation
Indices: 17188083--17188130 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
17188073 TCCGATCTTA
*
17188083 GACTGGGAATGAACTCCGTATGCTT
1 GACTGGGAATGAACTCCATATGCTT
17188108 GACTGGGAATGAACTCCATATGC
1 GACTGGGAATGAACTCCATATGC
17188131 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (25 bp):
GACTGGGAATGAACTCCATATGCTT
Found at i:17188893 original size:26 final size:26
Alignment explanation
Indices: 17188864--17188916 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17188854 CCGATTCGAT
*
17188864 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17188890 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17188916 C
1 C
17188917 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17190524 original size:26 final size:26
Alignment explanation
Indices: 17190495--17190547 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17190485 CCAGTCCGAT
17190495 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17190521 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17190547 C
1 C
17190548 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17191433 original size:26 final size:26
Alignment explanation
Indices: 17191394--17191446 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17191384 CTGGTTCGAT
17191394 CTTAGACTGCGAATGAACTCCATATG
1 CTTAGACTGCGAATGAACTCCATATG
* *
17191420 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGCGAATGAACTCCATATG
17191446 C
1 C
17191447 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCATATG
Found at i:17192214 original size:26 final size:26
Alignment explanation
Indices: 17192185--17192234 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17192175 CCGGTCCGAT
* *
17192185 CTTAGACTGGGAATGATCTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17192211 CTTAGACTAGGAATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
17192235 CGCCTAAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17192273 original size:791 final size:789
Alignment explanation
Indices: 17190745--17192273 Score: 2402
Period size: 791 Copynumber: 1.9 Consensus size: 789
17190735 GGCGAGCGAA
* * * *
17190745 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGTGTGGTAGGTGGGTTTAG
1 CACTACGCCGGCCAGAGAGACAGGATGCGCAACCCATGGATCAATAGGGTGGTAGGTGGGTTTAG
* *
17190810 GCACATCTTCATATTTTTCTGTGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCT
66 GCACATCCTCATA-TTTTCTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCT
* *
17190875 TAAGCCTTCACATGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACT
130 TAAGCCTTCACATGAAGTTTCACGGCAAGACGACTCATTTTCTATTTTTCATAATTTTCAAAACT
* * *
17190940 TTTTGAGGATCGGGATTTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCCGAAACTTGGTAGACGT
195 TTCTGAGGATCGAGATTTTTTAAAATTTCTTTGGAAAGAGTTTTGGCCCGAAACTTGGTAGACGT
17191005 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTT
260 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTT
*
17191070 TGTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGCCAGCAAACCTGTA
325 TGTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGCCAGCAAACCTGTA
* * *
17191135 AAATCTCAAATGCTCTTTAAGGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAT
390 AAATCTCAAATGCTCTTTAAGAGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
17191200 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCTCCCGATCCC
455 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCAC
* * * * **
17191265 CGGAACCCCAATGTCATCGGTCAGGTTCTCTGGCGATACTCCGACGATGGTGCCCCGGTGAAGAA
520 CGAAACCCCAATGCCATCGGTCAAGTTCTCTGGCGATACTCCAACGATGGTGCCCCGACGAAGAA
* * * ** * * *
17191330 AAATGCGGTACCAGCACATGCCCGAGCCTAGCATGTGCTACCGGAACCCTCGGTCTGGTTCGATC
585 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGGGCTACCACAACCCTCAGTCCGGTCCGATC
* * *
17191395 TTAGACTGCGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTATATGCCTAACTCAACCCA
650 TTAGACTGCGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCATACGCCTAACTCAACCCA
*
17191460 CGAAACGAGCGCGCGTGCGCTCAGCCAGCCAAAGCCAACCGATAAAACGAGCGGGAGGGTGGGCG
715 CGAAACGAGCGCGCGGGCGCTCAGCCAGCCAAAGCCAACCGATAAAACGAGCGGGAGGGTGGGCG
17191525 CGCGGGCGGG
780 CGCGGGCGGG
* * *
17191535 CACTACGTCGGCTAGAGAGACAGGATGCGCAACCCATGGATCAATAGGGTGGTAGGTGTGTTTAG
1 CACTACGCCGGCCAGAGAGACAGGATGCGCAACCCATGGATCAATAGGGTGGTAGGTGGGTTTAG
17191600 GCACATCCTCATA-TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
66 GCACATCCTCATATTTTCTG--TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
17191664 GTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATAATTTTCAAAA
129 -TTAAGCCTTCACATGAAGTTTCACGGCAAGACGACTCATTTTCTATTTTTCATAATTTTCAAAA
17191729 CTTTCTGA-GATTCGAGATTTTTTAAAATTTCTTTGGAAAGAGTTTTGGTCCC-AAACTTGGTAG
193 CTTTCTGAGGA-TCGAGATTTTTTAAAATTTCTTTGGAAAGAGTTTTGG-CCCGAAACTTGGTAG
*
17191792 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
256 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
*
17191857 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGCCAGCAAACC
321 ATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGCCAGCAAACC
* *
17191922 TGTAAAATCTCAAATGCTCTTTAA-AGGGGTGCGAGTTCTCGAGTTTTGATGAGGGATAGGGGTC
386 TGTAAAATCTCAAATGCTCTTTAAGAGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
17191986 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
451 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCG
* * *
17192051 ATCACCGAAACCTCAATGCCGTCGGTCAAGTTCT-TCGGCGATGCTCCAACGATGGTGCCCCGAC
515 ATCACCGAAACCCCAATGCCATCGGTCAAGTTCTCT-GGCGATACTCCAACGATGGTGCCCCGAC
* * * * *
17192115 GAAGAAAAATGCGGCACCAGCCCATGCCCGAGCCCAGCATGGGTTGCCACAACCCTTATTCCGGT
579 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGGGCTACCACAACCCTCAGTCCGGT
* * * * * *
17192180 CCGATCTTAGACTGGGAATGATCTCCGTATGCTTAGACTAGGAATGAACTCCGTACGCCTAAGTT
644 CCGATCTTAGACTGCGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCATACGCCTAACTC
* *
17192245 AACCCACGAAACGAGCGTGTGGGCGCTCA
709 AACCCACGAAACGAGCGCGCGGGCGCTCA
17192274 ACTGGCCAGA
Statistics
Matches: 671, Mismatches: 61, Indels: 13
0.90 0.08 0.02
Matches are distributed among these distances:
788 6 0.01
790 198 0.30
791 464 0.69
792 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (789 bp):
CACTACGCCGGCCAGAGAGACAGGATGCGCAACCCATGGATCAATAGGGTGGTAGGTGGGTTTAG
GCACATCCTCATATTTTCTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTT
AAGCCTTCACATGAAGTTTCACGGCAAGACGACTCATTTTCTATTTTTCATAATTTTCAAAACTT
TCTGAGGATCGAGATTTTTTAAAATTTCTTTGGAAAGAGTTTTGGCCCGAAACTTGGTAGACGTG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTT
GTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGCCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGAGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACC
GAAACCCCAATGCCATCGGTCAAGTTCTCTGGCGATACTCCAACGATGGTGCCCCGACGAAGAAA
AATGCGGCACCAGCACATGCCCGAGCCCAGCATGGGCTACCACAACCCTCAGTCCGGTCCGATCT
TAGACTGCGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCATACGCCTAACTCAACCCAC
GAAACGAGCGCGCGGGCGCTCAGCCAGCCAAAGCCAACCGATAAAACGAGCGGGAGGGTGGGCGC
GCGGGCGGG
Found at i:17193116 original size:26 final size:26
Alignment explanation
Indices: 17193080--17193133 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
17193070 GGTCCGATCA
*
17193080 TAGACAGGGAATGAACTCTGTATGCT
1 TAGACAGGGAATGAACTCTGTATACT
*
17193106 TAGACTGGGAATGAACTCTGTATACT
1 TAGACAGGGAATGAACTCTGTATACT
17193132 TA
1 TA
17193134 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (26 bp):
TAGACAGGGAATGAACTCTGTATACT
Found at i:17194180 original size:26 final size:26
Alignment explanation
Indices: 17194144--17194194 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17194134 GATTCGATCC
*
17194144 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
17194170 TAGACTGGGAATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
17194195 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:17194930 original size:226 final size:226
Alignment explanation
Indices: 17194536--17194988 Score: 906
Period size: 226 Copynumber: 2.0 Consensus size: 226
17194526 TCACGTGAAG
17194536 TTTCATGGCAAGTCGACTCGTTTTCTACTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATT
1 TTTCATGGCAAGTCGACTCGTTTTCTACTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATT
17194601 TTTAAAATTTTTTTGGAAGGAGATTTGGCCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGT
66 TTTAAAATTTTTTTGGAAGGAGATTTGGCCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGT
17194666 TGGCATGCATAAAAAAAAATTCAGCTAAAAATTCGAAGTGTACAAGATATTGTGACCATTTGAAA
131 TGGCATGCATAAAAAAAAATTCAGCTAAAAATTCGAAGTGTACAAGATATTGTGACCATTTGAAA
17194731 AAAGTGTCCCCATTTTAGACACTTTAATGGC
196 AAAGTGTCCCCATTTTAGACACTTTAATGGC
17194762 TTTCATGGCAAGTCGACTCGTTTTCTACTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATT
1 TTTCATGGCAAGTCGACTCGTTTTCTACTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATT
17194827 TTTAAAATTTTTTTGGAAGGAGATTTGGCCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGT
66 TTTAAAATTTTTTTGGAAGGAGATTTGGCCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGT
17194892 TGGCATGCATAAAAAAAAATTCAGCTAAAAATTCGAAGTGTACAAGATATTGTGACCATTTGAAA
131 TGGCATGCATAAAAAAAAATTCAGCTAAAAATTCGAAGTGTACAAGATATTGTGACCATTTGAAA
17194957 AAAGTGTCCCCATTTTAGACACTTTAATGGC
196 AAAGTGTCCCCATTTTAGACACTTTAATGGC
17194988 T
1 T
17194989 ACTGGCAGCA
Statistics
Matches: 227, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
226 227 1.00
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.37
Consensus pattern (226 bp):
TTTCATGGCAAGTCGACTCGTTTTCTACTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATT
TTTAAAATTTTTTTGGAAGGAGATTTGGCCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGT
TGGCATGCATAAAAAAAAATTCAGCTAAAAATTCGAAGTGTACAAGATATTGTGACCATTTGAAA
AAAGTGTCCCCATTTTAGACACTTTAATGGC
Found at i:17195300 original size:26 final size:26
Alignment explanation
Indices: 17195264--17195316 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17195254 CCAGTCTGAT
*
17195264 CTTAGACTGGGACTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17195290 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17195316 C
1 C
17195317 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17196508 original size:897 final size:898
Alignment explanation
Indices: 17194762--17199749 Score: 6327
Period size: 894 Copynumber: 5.6 Consensus size: 898
17194752 CTTTAATGGC
* *
17194762 TTTCATGGCAAGTCGACTCGTTTTCTACTTTTCACGATTTTTGAAACTTTTTACGGTTC-AGGAT
1 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GAT
* * *
17194826 TTTT-AAAATTTTTTTGGAAGGAGATTTGGCCCCCAAACTTGGTAGACATGATCCTTGTATTTTT
65 TTTTAAAAATTTTTTCGGAAGGAGTTTTGG-CCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * *
17194890 GTTGGCATGCATAAAAAAAAATTCAGCTAAAAATTCGAAGTGTACAAGATATTGTGACCATTTGA
129 TTTGGCATGC--AAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
17194955 AAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGC
192 AAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
17195020 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
257 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* ** *
17195085 CCAGCACCCATCGCACATCATGTGTGCACA-CCCCCGGCCCCGGTGATCGTCGGAACCTCAATGC
322 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC-CCGATCATCGGAACC-CAATGC
* * * * * *
17195149 CGTCGGTCAGGTTCTCTGATGATGCTCTGGTGATGGTG-CCCTGACGAAGAAAAATGCGACACCA
385 CGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCAG-CGAAGAAAAATGCGGCACCA
* * * *
17195213 GCACATGCCCGAGCCTAGCCTGTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGACT
449 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAAT
*
17195278 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAA-CCA-GCAGAACGAGCG
514 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG-A-AACGAGCG
* * * * * *
17195341 TACGGGCACTCAGCCGGCCAGAGGGGTGGGATGTGCAAGCTGGGGATCGGCCAGGTCCCCCTCTG
577 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTG
* * * * * * *
17195406 CGTGCTATCAATCCTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGATTAGGAATG-AACTCT
642 CGTGCTGTCAATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAATTC-
** * *
17195470 GTATGCCTAAGCCAACCGACGAAACG-A-GCGGACGGGCGGGCGGGCACTACATCGGCTAGAGAA
706 GTATGCCTAAGCCAACCGACGAAACGAACGCGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAG
** *
17195533 ACGGGATTTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTG
770 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
* *
17195598 CATACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAG
835 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * *
17195662 TTTCATGGCAAGACGACTCGTTTTCTACTTTTCACGA-TTTTGAAAACTTTTTGCGTTTCGAGAT
1 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG-AAACTTTTTACGGTTCGAGAT
*
17195726 TTTTAAAAATTTTTT-GGAAGGAGTTTTGGCCCCAATCTTGGTAGACGTGATCCTTGTATTTTTT
65 TTTTAAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTT
* *
17195790 TTAGG-ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAGTTGAAA
130 TT-GGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* * *
17195854 AAAGTGTCCCTATTTTAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTAAAATGCTC
194 AAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * * * *
17195919 TTTAA-GGGGTATGAGTTCTCAAAGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACG
259 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * *
17195983 AGCACCCTTCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCGTCGGAACGCCAATGCCGT
324 AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCATCGGAAC-CCAATGCCGT
* *
17196048 CGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCGCAGCGAAGAAAAATGCGGCACCAGCAC
388 CGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCAC
* * ** * *
17196113 ATGCCC-AGCCCAGCATGTGCTGCCACAACCCTCTGTCTGGTCCGATCTT-GACTTGGAAAGAAC
453 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAAC
* *
17196176 TCCGTATGCTTAAACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
518 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
** * * *
17196241 CGCTCAGTTGGCCAGAGGGGCAGGATGCGCAAGCCGGCGATCGGCCAGGTCCCCCTCTGCGTGCT
583 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCT
* * * * *
17196306 GTCAATCTTGCTGCCACAACCCTTGGTCTGGTCTGATCTTACACTGCGAATGAAATTCGTATGCC
648 GTCAATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAATTCGTATGCC
* * * * *
17196371 TAAGCCAACTGACGAAACGAGCGTGCGGCCGGGCGGGCGGGCAGTAGGCCGGCCAGAGAGGCGGG
713 TAAGCCAACCGACGAAACGAAC--GCGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* *
17196436 AT-CGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGC
775 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* * * * *
17196500 CGATGCCATTTTTTTGGCTTGTAAATTCACACAATGGTCCCTTAATCCTTCACGCGAAG
840 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* *
17196559 TTTCATGGCAAGACGACT-GATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGAT
1 TTTCATGGCAAGACGACTCG-TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGAT
* * * * *
17196623 TTTCT-AAAATTTTTTTGGAAGGAATTTTGGCCCCAAACTTTGTAGACATGATCCTTG-AATTTT
65 TTT-TAAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * *
17196686 TTTGGCATGCACAAAAAAATTCAGCTAAGAACACGAAGTGTACAAGATTTTGTGACCATTTGAAA
129 TTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* * **
17196751 AAAGTGTCCCCATTTCAGACACTTTAAAGGCTACTGATAGCAAACCTGTAAAATCTCAAATGCTC
194 AAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* *
17196816 TTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACC
259 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * * * **
17196880 AACTCCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTTGATCACCGGAACCCCATGCCAC
324 AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-CGATCATCGGAACCCAATGCCGT
* ** *
17196945 CGGTCAGGTTTTCCGGCAATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCAC
388 CGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCAC
* ** * * * * *
17197010 ATGCCTGAGCCCAGCATGTGCTATCGCAACCCTCAGTCCGGTCCAATCATAGACTAGGAATGAAC
453 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAAC
* * *
17197075 TCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTTCGGG
518 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * *
17197140 CGCTCAGCCGACCAGAGGGGCGAGATGCGTAAGTCGGGGATCGACCGGGTCCCCCTCTGTGTGCT
583 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCT
* * * * * * * *
17197205 GCCGATCCTGCTACTGCAACCCTCAGTCTGGT-TCAATCTTAGACTGGGAATGAACTCCGTATGC
648 GTCAATCCTGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAAATTCGTATGC
* *
17197269 CTAAGCCAACTGACGAAACGAACG-GGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGAT
712 CTAAGCCAACCGACGAAACGAACGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* *
17197333 GCGCAAACCGTGGATCGATAGGGTGGTAGGTGGGTTTTA-GTACATCTTCATATTTCTGCATGCC
777 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG-TTTAGGCACATCTTCATATTTCTGCATGCC
* * * *
17197397 AATGCCATTTTTATGGCTTGTAAATTAATACAATGGCCCCTTAAGCCTTCATGTGAAA
841 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* *
17197455 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGAGATT
1 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGA-T
* * * ** *
17197520 TTTTAAAAGTTTTTTCAGAAATGAGTTTTGGCCCCAAACTTCTTAGATGTGATCCTTGTATTTTT
65 TTTTAAAAATTTTTTC-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTT
* * *
17197585 TTTTCGCAATGCCAGAAAAAAAATTCAGCTAAAAACTAG-AGTGTACAAGATTTTCTGACCATTT
128 TTTTGGC-ATG-CA-AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TT
** * * *
17197649 TGAAAAAAGTGTCCCCCATTTCGGACAACTTTAATGGCTACTGGCAACAAACCTTTAAAATAT-A
189 TGAAAAAAGTGT-CCCCATTTTAGAC-ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
*
17197713 AATG--CTTT-AGGGGGTGTGAGTTCTCGAGGTTTGATTGAGGGATAGGGGGCCAATATAAGGGA
252 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA-TGAGGGATAGGGGGCCAATATAAGGGC
* * * * *
17197775 CAAGTTACCTATCCACCCCATCACACATCATGTGCACACACCCCCCGTCCCCCCGATCACCGGAA
316 CAAG-TACC-A-GCA-CCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCATCGGAA
* * * * * *
17197840 CCCCAATG-C-T---ACACG---T-CAG-G-T--TCCGACGATGGTG-CCCGGCAAAAGAAAATA
377 -CCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCAGC-GAAGAAAA-A
* * * * * *
17197891 AG-GCCACTAGCACATGCCCGAGCCAAGCATGTGCTGCCGCAATCCTCGGTCCAATCCGATCTTA
439 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTA
*
17197955 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
504 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * * **
17198020 AACTAGCGTGCGGGCGTTCAGTCGGCCGGAGGGGTGGGATGCGCAAGCCGGGGATTGGTTGGGTC
569 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTC
* * * * * *
17198085 CCCCTCTGTGTGCTGCCAAT-CTAGCTGCCGCAACCCTTGGTCCGTTCTGATCTTAGATTGGGAA
634 CCCCTCTGCGTGCTGTCAATCCT-GCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAA
* * * * * *
17198149 TGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCG-GGCGGGCGGGTGGGCACTACGCCAGC
698 TGAAATTCGTATGCCTAAGCCAACCGACGAAACGAACGCGGCGGGCGGGCGGGCACTACGCCGGC
* * * *
17198213 CGGAGGGACGGGATGCGCAAGGCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
763 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * *
17198278 ATTTCTGCATGCCAATTCCATTTTTATGGCTTGTAAATACATACAATTGTCCCTTAAGCCTTCAC
828 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
17198343 GTGAAG
893 GTGAAG
* *
17198349 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATT
1 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATT
*
17198414 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCGC-TGTATTTTTT
66 TTTAAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC-CTTGTATTTTTT
* ** * * *
17198478 TTCGCATGCCCAAAAAAATTCATCTAAAACCTCGAAGTGTACAGGATTTTGTGACCATTTGAAAA
130 TTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
*
17198543 AA-TGTCCCCATTTCT-GACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTC
195 AAGTGTCCCCATTT-TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
*
17198606 TTTAAGGGGGTGTGAGCTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
259 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * *
17198671 AGTACCCATCACACATCATGTGCGCACACCCCCCCCGGCCGCCCCGATCATCAGAACCCTAATG-
324 AGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCC-CCCCGATCATCGGAACCC-AATGC
*
17198735 C--C-GTC-GG-T-T-AGGT--T-CTCCGGCGATGGTGCCCCAGC--AG---AATGC-GCACCCA
385 CGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCAGCGAAGAAAAATGCGGCA-CCA
* * * * **
17198784 GC-CAT-CCCGAGCCCAGCATGTGCTACTGTAACCCTCGGTCCGGTTTGATCTTAGACTGGGAAT
449 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAAT
* * * *
17198847 GAACCCCATATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAGCGAGCGTG
514 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * ** * *
17198912 CGGGTGCTCAGCCGGCCAGAGTGGCTGGATGAACAAGCCAGGGATCGGCTGGGTCCCCCTCTGCG
579 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCG
* * ** * * *
17198977 TGCTGTCGATCCTGCTGCTGCAACCCTCAATCTGATC-CATTCTTAGACTGGGAATG-AACTCTG
644 TGCTGTCAATCCTGCTGCCGCAACCCTCGGTCTGGTCTGA-TCTTAGACTGGGAATGAAATTC-G
* * * * *
17199040 TATGCCTAAGTCAACCGACGAAATGAACGGGCGGGCGGACGGGCGGGCACTACGTCGACCAGAGA
707 TATGCCTAAGCCAACCGACGAAACGAAC--GC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
*
17199105 GACGGGATGCGCAAGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
769 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
*
17199170 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAC
834 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * ** * *
17199235 TTTCACGGCAAGAGGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTGTTGCGGTTC-AGGAT
1 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GAT
* * * ** *
17199299 TTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTACCTTTG
65 TTTTAAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTT
*
17199364 TTGGCATGCAAAAAAAAATGCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
130 TTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * *
17199429 AAGTGTCCCCATTTTAGACACTTTAATTGCTACTGGTAGCAAACCTGTAAAATTTCAAATGCTCT
195 AAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
** * *
17199494 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGTGAATGTAAGGGCCAAGTACCG
260 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * *
17199559 GCACCCATCGCACATCTTGTGTGGACACCCCCTCGGCCCACCGATCGTCGGAACCCCAATGCCGT
325 GCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCGATCATCGGAA-CCCAATGCCGT
* * * * *
17199624 CGGTCAGGTTCTCTGGTGATGCTCCGGTGATGGTGCCCCAACGAAGAAAATTGTGGCACCAGCAC
388 CGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCAC
* *
17199689 ATGCCCGAGCCTAGCATGTGTTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAAT
453 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAAT
17199750 TAATTCCATA
Statistics
Matches: 3556, Mismatches: 432, Indels: 197
0.85 0.10 0.05
Matches are distributed among these distances:
881 3 0.00
882 228 0.06
883 9 0.00
884 29 0.01
885 55 0.02
886 359 0.10
887 166 0.05
888 69 0.02
889 61 0.02
890 10 0.00
891 12 0.00
892 37 0.01
893 31 0.01
894 655 0.18
895 82 0.02
896 349 0.10
897 615 0.17
898 163 0.05
899 242 0.07
900 81 0.02
901 23 0.01
902 59 0.02
903 113 0.03
904 21 0.01
905 31 0.01
906 13 0.00
907 40 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATT
TTTAAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTT
TGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
AGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCATCGGAACCCAATGCCGTCGG
TCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATG
CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCC
GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTC
AATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAATTCGTATGCCTAA
GCCAACCGACGAAACGAACGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
Found at i:17197088 original size:26 final size:26
Alignment explanation
Indices: 17197059--17197109 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17197049 GGTCCAATCA
17197059 TAGACTAGGAATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCCGTATGCT
* *
17197085 TAGACTGGGAATGAACTCTGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
17197110 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCT
Found at i:17197980 original size:26 final size:26
Alignment explanation
Indices: 17197951--17198003 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17197941 CCAATCCGAT
17197951 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17197977 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17198003 C
1 C
17198004 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17198869 original size:26 final size:26
Alignment explanation
Indices: 17198833--17198885 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17198823 CCGGTTTGAT
17198833 CTTAGACTGGGAATGAACCCCATATG
1 CTTAGACTGGGAATGAACCCCATATG
*
17198859 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACCCCATATG
17198885 C
1 C
17198886 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCATATG
Found at i:17201385 original size:26 final size:26
Alignment explanation
Indices: 17201356--17201406 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17201346 GGTCCGATCA
*
17201356 TAGACTAGGTATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCCGTATGCT
*
17201382 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
17201407 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCT
Found at i:17201648 original size:895 final size:896
Alignment explanation
Indices: 17199712--17207057 Score: 9449
Period size: 896 Copynumber: 8.2 Consensus size: 896
17199702 GCATGTGTTG
* * * * * * *
17199712 CCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATTAATTCCATATGCCTAAGCCAACTGAC
1 CCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGAC
* * * *
17199777 GAAACGAACGGGCGGGCAGGCGGGCGGGTGGGCACTAGGCCGGCCAGAGCGGCGGGATGCGCAAG
66 GAAACG-A---GC--G--GGCGGGC----GGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAG
* *
17199842 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCGATGCCAT
119 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * * * *
17199907 TTTTGTGGTTTCTAAATTCATACAATGGTCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGATG
184 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * *
17199972 ACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTCTAAAATTTTTTC
249 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * *
17200037 GGAAGGAATTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAA
314 GGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
17200102 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
379 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
17200167 GACACTTTAATGGCTACTGGTAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
444 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
17200232 TCTCAAGGTTTGATGAGGGATAGGGGGGCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
509 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
17200297 ATGTGCACACACCCCCCCGGCCCCCCTTATCATCGGAACCCTAATGCCGTCGGTCAGGTTCTCCG
574 ATGTGCGCACACCCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * * * *
17200362 ACAATGCTCCGGCGATGGTGCCTCGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCGCAGC
639 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * * * * *
17200427 ATGTGCTATCGCAACCCTCAGTCCGGTCCGATCATAGACTAGGTATGAACT-CGATATGCTTACA
704 ATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCG-TATGCTTAGA
* * *
17200491 CTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCA
768 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * * *
17200556 GTGGGGCGTGATGCGCAAGCCGGGGATCGATCGGGTCCCCCACTGTGTGCTGTCGATCCTGCTA
833 GAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTA
* * * * * * * *
17200620 TCGTAACCCTCGTTCTGGTTTGATCTTCGACTGGGAATGAACTCCATATGCCTAAGGCAACAGAC
1 CCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGAC
* * * *
17200685 GAAATGAGCGGGCGGGCGGGCACTACGTCGGCCCGAGAGACGAGATGCGCAACCCGTGGATCGAT
66 GAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGAT
* * * * * * **
17200750 ATGGCGGTAAGTGTGTTTAGGCACATCTTAATATTTCTGCGTGCCAATGGTATTTTTATGGCTTG
131 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* * *
17200815 TAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTA
196 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * *
17200880 TTTTTCACTATTTTTCAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTT
261 TTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTT
* * *
17200945 GGCCCCAAACATGGTAGACGTGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAC
326 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
**
17201010 AACTCGAAGTGTATTAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
391 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * * *
17201075 GCTATTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGAGGTGTGAGTTCTCGAGGTTTG
456 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
*
17201140 ATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCACCCATCGTACATCATGTGCGCACAC
521 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * ** * *
17201204 TCCCCCCGGCCCCCCTTATCGTCAGAA-CCTTATGCCTTCGGTCAGGTTCTCCGACAATGCTCCG
586 -CCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG
* * * ** *
17201268 GTGATGGTGCCTCGACGAAGAAAAATGTGGCACCAGCACATGCCTAAGCCCAGCATGTGCTATCG
650 GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCG
* * *
17201333 CAACCCTCGGTCTGGTCCGATCATAGACTAGGTATGAACTCCGTATGCTTAGACTGGGAATGAAC
715 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* *
17201398 TCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGAT
780 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * *
17201463 GCACAAGCTGGGGATCGGTCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCTA
845 GCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTA
* * * * *
17201515 CCGCAACCCTC-AGTCTGGTCCGATCTTCGACTGGGAATGAACTCCGTATGCCCAAGGCAACAGA
1 CCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGA
* * * *
17201579 TGAAACGAGCGGGCGGACGGGCACTACGCCGGCCAGAGAGACGAGATGCG-TAGCCCGTGGATGG
65 CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAG-CCGTGGATCG
* * * * **
17201643 ATATGGTGGTAGGTGTGATTAGGCACATCTTAATATTTCTGCATGCCAATGGTATTTTTATGGCT
129 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* * * *
17201708 CGTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTC
194 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * **
17201773 TATTTTTCACTATTTTTCAAACTTTTTACGGTTCAAGATGTTTTAAAATTTTTTCAAAAGGATTT
259 TATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTT
* * *
17201838 TTGGCCCCAAACATGGTAAACGTGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
324 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
***
17201903 AAAACTCGAAGTGTGTTAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
389 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * * * *
17201968 TGGCTACTAGTAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGAGGTGTGAGTTTTCGTGGTT
454 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * *
17202033 TGATGA-GGATTAGGGGGCCAATATAAGGG-CTAGTACCAGCGCCCATCGCACATCGTGTGCGCA
519 TGATGAGGGA-TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* *
17202096 CACCCGCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
583 CACCC-CCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
* * * *
17202161 CCGGTGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
647 CCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA
* * *
17202226 CCACAATCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
712 CCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * *
17202291 AACTCCGTATGCCTAAGTCAAACCACGAAACGAGCGTACGGGCGCTCAGCTGGCCAGAGGGGTGG
777 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * *
17202356 GATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTTGTCAATCCTGCTA
842 GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGC-TGCCGATCCTGCTA
* * * *
17202412 TCGTAACCCTC-AGTCCAGTGC-GATCTTAGACTGGGAATGAACTCCGTATGACTAAGCCAATC-
1 CCGCAACCCTCGA-TCCGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CA
** * * * * *
17202474 GATTAAATGAGCGGACGGGCGGGCACTACGCCGGCCAGAAAGACAAGATGCGCAAGCCATGGATC
63 GACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATC
* * *
17202539 GATCGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGCGTG-CAATTGCCATTTTTATGG
128 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA-TGCCATTTTTATGG
*
17202603 CTTGTAAATTCATACAATGGTCCCTTAAGTCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
192 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * ** *
17202668 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGAAAAAAG
257 TCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAT
17202733 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
322 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
*
17202798 TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
387 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
17202863 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTCTGAGTTCTCGAGG
452 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
** * * * *
17202928 TTTGATGAGGGATAGGCAGCGAATATAAGGGCCAAGTACCAGCAGCCATTGCACATCATGTGCGA
517 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * *
17202993 ACA-ACCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCATGTTCTCCGACGATGCT
582 ACACCCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
** * * ** *
17203057 CCGATGATGGTACCCCGACGAAAAAAAATGCGGCACCAGCACATGCTTGAGCCCAGCATGTGCTG
647 CCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA
* * * *
17203122 CCGCAACCCTCGATCTGGTCGGATCTTAGACTGGGAATGAACTTCGTATGCTTACACTGGGAATG
712 CCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * **
17203187 AACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTACGAGCGCTCAGCCGGCCAGAGGGGCTA
777 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * *
17203252 GATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGTTGCTGATCCTACTA
842 GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTA
* * * * *
17203307 CCGTAACCATCTG-TCCGGTCTGATCTAAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGA
1 CCGCAACCCTC-GATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGA
* * *
17203371 CGAAATGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGA
65 CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGA
**
17203436 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGAAATTTTTATGGCTT
130 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* *
17203501 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACACGTTTTTT
195 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * *
17203566 ATTTTTCACGATTTTTAAAACTTTTTGA-GGTTC-AGTATTTTTTTTAAATTTTTTGGGAAAGAT
260 ATTTTTCACGATTTTTAAAACTTTTT-ACGGTTCGAG-A-TTTTTTAAAATTTTTTCGGAAGGAT
* *
17203629 TTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
322 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
*
17203694 TAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
387 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
17203759 AATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTTTTTAAGGGGGTGTGAGTTCTCAAGG
452 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
17203824 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCAGGTGCGC
517 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
** * * *
17203889 ACACCTCCCCTAG-CCCCCTCGATCGTCGAAACCCCAAGGCCG-CAAGTCAGGTTCAT-CGACGA
582 ACACC-CCCCCGGCCCCCCT-GATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTC-TCCGACGA
* * * * * * * *
17203951 TACTCCGACGATGGTG-GCCTAGGGATGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGTATG
643 TGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * * * *
17204015 TGCTACCGTAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATCAACTCCGTATCCTTAGATTGG
707 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * * *
17204080 GAATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGCATGCGGGCGCTTAGCCTGCCAGAGG
772 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * ** *
17204145 GGCGGGATGCGTAAGCCGAGGATCGGCCGGG-CTCCCCTCTGCATTTTGCCGATCCTACTA
837 GGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC-CCCCTCTGCGTGCTGCCGATCCTGCTA
* * * * *
17204205 CCGTAACCCTTGGTCCGGT-TCGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCGA
1 CCGCAACCCTCGATCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGA
*
17204269 CGGAAAGAACGAGCGGGCGGGCGGGCGGGCACTAC-CTCGGCCAGAGAGACG-GAATGTGCAAGC
65 C-G--A-AACGA----GCGGGCGGGCGGGCACTACGC-CGGCCAGAGAGACGAG-ATGCGCAAGC
* * ** *
17204332 CATGGATCGATAGGTTGGTAGGTGGGTTTAGGCATGTCTTCATATTTCTGCATGCCAATGCAATT
120 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
17204397 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGA
185 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
17204462 CTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTGA-GGTTCGAGATTTTTTAAAATTTTTTG
250 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTT-ACGGTTCGAGATTTTTTAAAATTTTTTC
* * *
17204526 GGAAGGATTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTTTTGGCATGCACAAGAA
314 GGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
17204591 AATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
379 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
17204656 GACACTTTAATGCCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
444 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
17204721 TCTCGAGGTTTTATGAGGGATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCGTACATC
509 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
17204786 ATGTGCGCACA-CCCCCCGG-CGCCCTCGATCGTCGGAACCCCAATGTCGTCGATCAGGTTCTCC
574 ATGTGCGCACACCCCCCCGGCCCCCCT-GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* *
17204849 GACGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAG
638 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* *
17204914 CATGTGCTACCGCAA---AC---CT--T--G-T-TT---C-------G-A-TCAG-AT-CTTAGA
703 CATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * *
17204953 CTGGGAATGAACTCCGTATTCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGACCA
768 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * * *
17205018 AAGGGGCGGGATGCGCAAGCCGGGGATCGATCGAGTCCCCCTCTGCATGCTGTCGATCCTGCTG
833 GAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTA
** * * * * * *
17205082 CTACAACCATCGATCCAGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTCAGCCAACCGAC
1 CCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGAC
* * * * * *
17205147 AAAACAAGGGGGGGGACGGGTCGGCAGGCACTACGCCTGCCAGAGAGACGGGATGCGCAAGCCAT
66 GAAAC---GAGCGGG-CGGG-C-G--GGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGT
*
17205212 GGATCGATAGGGTGGTAGGTGGGTTTAGG-ATCATCTTCATATTTCTGCGTGCCAATGCCATTTT
123 GGATCGATAGGGTGGTAGGTGGGTTTAGGCA-CATCTTCATATTTCTGCATGCCAATGCCATTTT
*
17205276 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGACGACT
187 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * * * * *
17205341 CATTTTTTATTTTTCACAATTTTAAAAACTTTTTGCGGTTCGGGATTTTTCAAAATTTTTTCAGA
252 CGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGA
* *
17205406 AGGACTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
317 AGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
17205471 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
382 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
17205536 ACTTTAATGCCTATTGGCAGCAAACCTTTAATTAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
447 ACTTTAATGGCTACTGGCAGCAAACCTGTAA--AATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
17205601 CTCGAGGTTTTATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATTGTACATCA
510 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
17205666 TGTGCGCACGCCCCCCCGG-CCCCCTCGATCCTCGGAACACCAATGCCG-CTGGTCAGGTTCTCC
575 TGTGCGCACACCCCCCCGGCCCCCCT-GATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCC
* *
17205729 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACTAGCACATGCTCGAGCCCAG
638 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * *
17205794 CATGTGCTGCTGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
703 CATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* ** * * * *** *
17205859 TTACGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGAAAGGGCACTCAGCCGGCCA
768 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * * *
17205924 GAGGGACGGGATACGAAAGCCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCGATCCTACTA
833 GAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTA
* * *
17205988 CTGCAACCCTCGATCCGGTCTGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGAC
1 CCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGAC
* * * * * *
17206053 GAAACAAGTGGGCAGGCGGGCGACCACTACGTCGGCCAGAGAGAAGGGATGCGCAAGCCGTGGAT
66 GAAACGAGCGGGCGGGC-GG-G--CACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGAT
* * *
17206118 CGATAGGGTGGTAGGTGGGTTGAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
127 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* * *
17206183 CTTGTAAATTAATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACTCGTTT
192 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * *
17206248 TCTATTTTTCACGATTTTCAAAACTTTTTGA-GGTTTG-GCATTTTTTAAAATTTTTTGGGAAGG
257 TCTATTTTTCACGATTTTTAAAACTTTTT-ACGGTTCGAG-ATTTTTTAAAATTTTTTCGGAAGG
** * *
17206311 ATTTTTACCCCCAAACTTGGTTGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
320 ATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
17206376 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
385 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
17206441 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCTTG
450 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT-CTCG
* *
17206506 AGGTTTGCATGAGGGAATAGGGGGGGC--TATAAGGGCCCAAGTA-CAGCACCCATCGAACATTC
514 AGGTTTG-ATGAGGG-ATA-GGGGGCCAATATAAGGG-CCAAGTACCAGCACCCATCGCACA-TC
* ** * *
17206568 ATGTGCG-A-A-CACCGAGGCCCCTTCC-GATC-TC-GAACCGTCAATGTCGCG-CAGTACAGGT
574 ATGTGCGCACACCCCCCCGGCCCC--CCTGATCGTCGGAACC-CCAATG-C-CGTCGGT-CAGGT
* ** * *
17206626 T-TCTCGACGGATTCTCCGATGATGGTGCCTTCGACGAAGAAAAATGCGG-ACCACGCAAAATGC
633 TCTC-CGAC-GATGCTCCGGCGATGGTGCC-CCGACGAAGAAAAATGCGGCACCA-GC-ACATGC
* * ** * * *
17206689 CC-AACCCGGCATGTGCTGTCGCAACCCCCTCGCT-TAGT-TGATCTTAGACTGGGAATGAACTC
693 CCGAGCCCAGCATGTGCTACCGCAA--CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTC
* * * * *
17206751 CGTATGCTTAGACTGGGAATGGACTTCGTAAGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCG
756 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * * *
17206816 CTCAGCCGGCCAGAGGGGCGAGATGCACAAGTCAGGGATTGGTCGGGTCCTCCTCTACGTGCTGC
821 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
17206881 CGATCCTGCTA
886 CGATCCTGCTA
* *
17206892 CCGCAACCCTCGATCCGGTATGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAATC-GA
1 CCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CAGA
* * * * * *
17206956 CGAAATGAACGGGCAGGCGGGCATTACGCTGGCCAGAGAGACGAGATGCGCAATG-CATGGATCG
65 CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAA-GCCGTGGATCG
*
17207020 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCGTATTT
129 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
17207058 TTACGTACGA
Statistics
Matches: 5713, Mismatches: 608, Indels: 242
0.87 0.09 0.04
Matches are distributed among these distances:
872 4 0.00
873 7 0.00
874 2 0.00
875 1 0.00
876 2 0.00
877 527 0.09
878 6 0.00
879 107 0.02
880 120 0.02
883 1 0.00
886 1 0.00
888 2 0.00
890 1 0.00
891 3 0.00
892 3 0.00
893 1 0.00
894 10 0.00
895 1123 0.20
896 1231 0.22
897 501 0.09
898 339 0.06
899 7 0.00
900 124 0.02
901 27 0.00
902 414 0.07
903 153 0.03
904 264 0.05
905 282 0.05
906 389 0.07
907 3 0.00
908 58 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
CCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGAC
GAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTT
GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
CCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGG
CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGC
AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
CGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTA
Found at i:17202279 original size:26 final size:26
Alignment explanation
Indices: 17202250--17202302 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17202240 CTGGTCCGAT
17202250 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17202276 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17202302 C
1 C
17202303 CTAAGTCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17203182 original size:26 final size:26
Alignment explanation
Indices: 17203146--17203198 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17203136 CTGGTCGGAT
* *
17203146 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
17203172 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
17203198 C
1 C
17203199 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:17205856 original size:26 final size:26
Alignment explanation
Indices: 17205827--17205879 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17205817 CCGATCCGAT
**
17205827 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
*
17205853 CTTAGATTACGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
17205879 C
1 C
17205880 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTACGAATGAACTCCGTATG
Found at i:17206767 original size:26 final size:26
Alignment explanation
Indices: 17206731--17206780 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17206721 CTTAGTTGAT
17206731 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
17206757 CTTAGACTGGGAATGGACTTCGTA
1 CTTAGACTGGGAATGAACTCCGTA
17206781 AGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17208743 original size:26 final size:26
Alignment explanation
Indices: 17208713--17208765 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17208703 GTTGACTTAG
* * *
17208713 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTAACTCCCAGTCTAA
17208739 GCATACGGAGTTAACTCCCAGTCTAA
1 GCATACGGAGTTAACTCCCAGTCTAA
17208765 G
1 G
17208766 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAACTCCCAGTCTAA
Found at i:17211343 original size:26 final size:26
Alignment explanation
Indices: 17211307--17211358 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17211297 GTTGACTGAG
*
17211307 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
17211333 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
17211359 TATCGGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:17212189 original size:26 final size:26
Alignment explanation
Indices: 17212159--17212211 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17212149 GTTGACTCAG
17212159 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
17212185 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17212211 G
1 G
17212212 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17213091 original size:26 final size:26
Alignment explanation
Indices: 17213068--17213140 Score: 137
Period size: 26 Copynumber: 2.8 Consensus size: 26
17213058 TTAGGCATAC
17213068 GGAGTTCATTCCCAGTCTAAGCATGT
1 GGAGTTCATTCCCAGTCTAAGCATGT
*
17213094 GGAGTTCATTCCTAGTCTAAGCATGT
1 GGAGTTCATTCCCAGTCTAAGCATGT
17213120 GGAGTTCATTCCCAGTCTAAG
1 GGAGTTCATTCCCAGTCTAAG
17213141 ATCGGACAGG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (26 bp):
GGAGTTCATTCCCAGTCTAAGCATGT
Found at i:17214007 original size:26 final size:26
Alignment explanation
Indices: 17213976--17214054 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
17213966 GTTAACTTAG
*
17213976 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17214002 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17214028 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17214054 G
1 G
17214055 AACAGACCAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17216592 original size:26 final size:26
Alignment explanation
Indices: 17216556--17216606 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17216546 GTTGACTTAG
17216556 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17216582 GCATACGGAGTTCATTCCTAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
17216607 TGATCGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17217496 original size:26 final size:26
Alignment explanation
Indices: 17217460--17217512 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17217450 GTTGACTTAG
17217460 GCATATGGAGTTCATTCCCAGTATAA
1 GCATATGGAGTTCATTCCCAGTATAA
*
17217486 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTATAA
17217512 G
1 G
17217513 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTATAA
Found at i:17217837 original size:904 final size:901
Alignment explanation
Indices: 17215470--17223286 Score: 9366
Period size: 903 Copynumber: 8.8 Consensus size: 901
17215460 ATGTGCAGCT
* ** * *
17215470 CGCCCGCCCGCCCGCCCGCTCGTTTTATCGATTGGCTTACGCATACGGAGTTCATTCCCAGTCTA
1 CGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * **
17215535 AGATCGGACCGGACCGAGGGTTGTGGTAGGAGGATCAGCAACACGCAGAGGGGGACCCGATCGAT
66 AGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGAT
* * * *
17215600 CCCCGGC-TGATGCATCCCGCCCCTCTGGCCGACTGTGCGCTCGCACGCTCATTTCGTGGGTTGA
131 CCCCGGCTTG-TGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * *
17215664 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGTGTTGATTCCCAGTCTAAGATCGGAC
195 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * ** *
17215729 CAAACCGATGGTTGTGGCAGCACATGCTGGGGTCAAGCATGTGCTGGTGTCGCA----T-TT--T
260 CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * ** * * * * * *
17215787 CAGGGCACCATCGCCGGAGCATCATCGGGGAATCTGACCAGCAGCATTGGGGTTCCGTCGATTGG
325 CGGGGCACCATCG-CAGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
* * * **
17215852 GGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGTGTGCTGGTAGTTGGCCCTGATATTCACCC
389 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
17215916 CCTATCCCTCATCAAACCTC-AGGAACTCAGACCCCCTTAAAAAGCATTTGAGATTTTACAGGTT
454 CCTATCCCTCATCAAACCTCGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * *
17215980 TGATGCCAATGGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
518 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
17216045 TACACTTCGAGTTTTTAGCTGACTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
583 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* *
17216110 CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAATCACGAACCGTAAAAAGTTTCA
648 CAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCA
* * *
17216175 AAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACC
711 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
17216240 ATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAA-ATGTGCCTAAA
776 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT-AAAGATGTGCCTAAA
*
17216304 CCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGTAGT---
840 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
* * * *
17216363 -GCCTGCCCG-CT---CTCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTA
1 CGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * ** * ** ** *
17216423 AGATTAGACCAGATGGAGGGTTGCGGCAGCAGTATCACCAGCACATAGAGGGGGACTCGGCCGAT
66 AGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGAT
* ** * * *
17216488 -CCCGACTTACGCATCCCGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGCGTTGAC
131 CCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * **
17216552 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTATGATCGGATT
196 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * *
17216617 GGATCGAGGGTTGCGGCAGCAGATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC
261 AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * * * *
17216682 GGGCCACCATCGCCGGAGCATCGTC-GAAAACCTGACCAGCAGTATTGGGGTTCCGACGATCGGG
326 GGGGCACCATCG-CAGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GG
* * * *
17216746 GGGGCCGGGGGGGTGTGCGCACATGAGGGGCCATGCGTGCTGGTACTTGGCCCTTATATTGGCCC
389 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
17216811 CCTATCCCTCATTAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTT
454 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
** * *
17216876 GCTGCTTGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCT
519 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
17216941 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
584 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * * * *
17217006 AAGTTTGTTGCCAAAAACCCCTTCCGAAAACATTTTAAAAAATCTCGAACCTTAAAAAGTTTCGA
649 AAGTTTG-GGCC-AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
* * * *
17217071 AAATCCTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAATTTAACGTGAAGGCTTAAGGGACCA
712 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * * *
17217136 TTGTATTAATTTACAAGCCATAAAAATGGCATTAGCACGTAGAAATATAAAGATGTTCCTAAACC
777 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACC
* * * *
17217201 CACCTACCACCCTATCGATCCACGGCTTGCGAATCCCATTTCTCTGGCCGACATAGTGCC
842 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
* * *
17217261 CGCCCGCCCGCCTGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATATA
1 CGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
** * * *
17217326 AGATCAGACCAAACCGAGGGCTACGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGGCCGAT
66 AGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGAT
* * * * * *
17217391 CCTCGGCTTGTGCAACCTGCCCCTTTGGCTGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGAC
131 CCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * * *
17217456 TTAGGCATATGGAGTTCATTCCCAGTATAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATC
196 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * *
17217521 AGACCAAGGGTTGCGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTCCTTCGTC
261 AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * *
17217586 GGGGCACCATCGCTAGACCATCGCCGGAGAAACTGACCGGCGGCATTGAGGTTTCGGCGATCGGG
326 GGGGCACCATCGC-AGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG
* *
17217651 CGGGCCGGGGGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGT-CTT-ACCCTTATATTGGCC
390 -GGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
17217714 CCCTATCCCTCATCAAACCTCGAGAACTGACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
453 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * *
17217779 TCCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGATCACAAAATCTTG
518 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
17217844 TACATTTCGA-TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAATACAATGATCACGTCTA
583 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC-AAAAATACAAGGATCACGTCTA
* * * *
17217908 CCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTCTAAAAAATCCCGAACTGCAAAAAGTTTCA
647 CCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
* * *
17217973 AAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
711 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
17218038 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
776 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAAC
* * * * ** *
17218103 CCACGTACCACCCAATCGATCCATGTCTTGTTCATCCTGTCTCTCT-G--G-CGT-G-G--
841 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
* * ** * *
17218156 AGCCCG--C-CC-GCCCGCTCGTTTCGTCGGTTGTCTTACTCATACGAAGTTCATTCCCAATCTA
1 CGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * **
17218217 AGATCGGACCGGATCGAGGGTTACGGTAGCAGGATCAGCTA-CACGTAGAGGGGGACCCGATCGA
66 AGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGC-AGCACGCAGAGGGGGACCCGGCCGA
* * * *
17218281 TCCCCAGCTTGTGCATCCTGCCCCTCTGGCCGACTGTGCGCCCGCACGCTCGGTTTCGTGGGTTG
130 TCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC-GTTTCGTGGGTTG
17218346 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
194 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * * * * *
17218411 CCAAACCAATGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTACTGGTGTCACA-TTTTC--AG
259 CCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * *** * * ** * **
17218473 --GGCGCACCATCGCCGGAGCATCATTGGGGAACCTGACCAGCGATATTGGGGTTCCGTCGATTA
324 TCGGGGCACCATCG-CAGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
* *
17218536 GGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGTGTGCTGGTACTTGGCCCTTATATTCGCC
388 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
17218600 CCCTATCCCTCATCAAACCTC-AGGAACTCAGACCCCCTTAAAGAGCAGTTGAGATTTTACAGGT
453 CCCTATCCCTCATCAAACCTCGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
17218664 TTGCTGCCAGTATCCATTAAAGTGCCTGAAAAGGGGACACTTTTTTCAAATGGTCACAAAATCTT
517 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* *
17218729 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAAATACAAGGATCACGTCT
582 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCT
** * **
17218794 ACCAAGTTTGGGTTGAAAACTCATTTCC-AAGGAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
646 ACCAAGTTTGGG-CCAAAACTC-CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
** * * *
17218858 TGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
709 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
17218923 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
774 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAA
* * * * * *
17218988 ACCCACCTACCACCCTATCGATCCATGTCTTGCTCATCCTGTCTCTCT-GTCGGCGTAGTGCC
839 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
* *
17219050 CACCCG--C-CC-GCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
1 CGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * ** * *
17219111 AGATCAAACTGGACCAAGGGTTGCAGCAGCAGGATCGATAGCACGTAGAGGGGGACCCGGCCAAT
66 AGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGAT
* * * * * * * * *
17219176 CCCCGGTTTGCGTATCCCACCACTCTTGCCGGCTGAGCGCCCGTAAGCTCATTTCGTGGGTTGAC
131 CCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
17219241 TTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A--C------C-G---
196 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * * * * * *
17219281 -GACTGAGGGTTGCAGCCGCACATGTTGGTCTCAGGCATGTACTGGTGCCACATTTTTCTTCTTT
261 AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
*
17219345 GAGGCACCATCGTCTA-AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
326 GGGGCACCATCG-C-AGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
** * *
17219409 GGGGCCGGGGGGCAGTGCGCACATGATGTGTGATGGGTGCTGGCACTTGGCCCTTATATTGGCCC
389 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
17219474 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTT
454 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * * *
17219539 GCTGCCAGTAGCAATTAAAGTGTTTAAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGT
519 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
17219604 ACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATATAGGGATCACGTCTACC
584 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * *
17219669 AAGTTTGGGACCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAA
649 AAGTTTGGG-CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
*
17219734 AATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
713 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
*
17219799 TGTGTGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAAGATGTGCCTAAACC
778 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT-AAAGATGTGCCTAAACC
* *
17219864 CACCTACCACCCTATCGATCCACGGCTTGTGCATCCTGTCTCTCTGGCCGACGTAGTGCC
842 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
* * * * *
17219924 CGCCCG---TCC-GCCCGTTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTA
1 CGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * ** * * * ** * *
17219985 AGATCAGACCGGACCTAAGGTTAAGGAAACAGGATCGACAGCACAAAGAGGGGGACCCAGTCGAT
66 AGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGAT
** ** * *
17220050 CCCCGGCTTGCACATCCTACCCCTCTAGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
131 CCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * * *
17220115 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCGAAGTTCATTCCAAGTCTAAGATAGGACC
196 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * **
17220180 GGACCGAGGGTTACGACAGCACATGCTGGGTTCGGGCATATGCTGGTGCCATATTTTTCTTCGTC
261 AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * * *
17220245 GGGGCACCAT--C---G--T---CGGAGAACCTGATCGACGGCATTGGGGATCAGACAAACGGTG
326 GGGGCACCATCGCAGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-G
*
17220300 GGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
390 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
17220365 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAAGTGCATTTGAG-TTTTATAGGTTTG
455 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* **
17220429 CTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCGTAAAATCTTGTA
520 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * **
17220494 CACTTTGAGTTTTAAGCTGAATAATTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
585 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * *
17220559 AGTTTGGGGCCAAAGCTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAATA-TTTCAAA
650 AGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA-AGTTTCAAA
* * *
17220623 AATCATAAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCAT
713 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * *
17220688 TGTATGAATTTATAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGTTGTGTCTAAACCC
778 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCC
*** * *
17220753 ACCTACCACCCTATCGATCCATTACTTGCGCATCCCGTCTTTCAGGCCG--GT-GT---
843 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
*
17220806 --------AG--T----GC-C----CG-C------CTTAGGCATACGGAGTTCATTCCCAGTCTA
1 CGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * *
17220845 AGATCAGACCAGACCGAGGGTTGCAGCCA-CAGGATCGGCAGCACGCAAAGGGGGACCCAGTCGA
66 AGATCAGACCGGACCGAGGGTTGC-GGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGA
* ** **
17220909 TCCCCGGCTTATGCATCCTACCCCTCTGGCCGATTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
130 TCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* *
17220974 CTTAGGCATACGGAGTGCATTCCCAATCTAAG-AT-C--AG---A----C---C--AGATC-G--
195 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
** * * *
17221020 -AG--C----GTTATGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTC-T--T
260 CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * * *
17221075 -----CA-C--CG--GAGCATCACCGGAGAACCTGACCGACGGCACTGAGGTTCCGACGATCGGA
325 CGGGGCACCATCGCAGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-
* * *
17221130 GGGGCC-AGGGGGTGTGCGCACATGATGTGCCATGGGTGCTGGTACTTGGCCTTTATATTGGCCC
389 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * * **
17221194 TCTATCCCTCATCAAACCTCTG-GAACTCCCACCCCCTTAAAGGGCATTTGAGGCTTTACAGGTT
454 CCTATCCCTCATCAAACCTC-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * *
17221258 TGTTGCCTGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTG
518 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * *
17221323 TACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATATAGGGATCACGTCTAC
583 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
*
17221388 CAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAA
648 CAAGTTTGGG-CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
* *
17221453 AAATCATAAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
712 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
17221518 TTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACC
777 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACC
* * *
17221583 CACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGCAGTGCC
842 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
** *
17221643 CGCTTGCCCGCCCGCCCGCTCGTTTCGT-GCGTTGATG-TT-GGCATACGGAGTTCATTCCCAGT
1 CGCCCGCCCGCCTGCCCGCTCGTTTCGTCG-GTTG--GCTTAGGCATACGGAGTTCATTCCCAGT
* * * * *
17221705 CTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAAAGGGGGACCCGACC
63 CTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCC
* * *
17221770 GATCCCCGGCTTGAGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTT
128 GATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * * *
17221835 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGAAGTACATTCCAACTCTAAGATCGG
193 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * **
17221900 ACCGGACCAAGGGTTGTGGCAGCACATGCTGACCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
258 ACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * * * * *
17221965 G-CTGGGGCACCATCGCCGAAGCACCGCCGAAAAACCTAACCGACGGCATTGGGGTTTCGACAAT
323 GTC-GGGGCACCATCGCAG-AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
* *
17222029 CGGGGGTGCCGGGGGGGTTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCCTATATT
386 CGGGGG-GCCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * * *
17222094 AGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGACAGTTTACA
449 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
17222159 GGTTTGCTGGCAGTAGCCATTAAAGTGTCTAAAAT-GGGACACTTTTTTCAAATGGTCACAAAAT
514 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
17222223 CTTTTACACTTTGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
579 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * *
17222288 CTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAA-TTTGAAAACTCCCAAACCGTAAAAAGTT
644 CTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
** * * * *
17222352 TTGAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATCAAACTTCACCTGAAGGCTTAAAGG
708 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
17222417 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTTGCATGCAGAAATATGAAGATGTGCCTA
773 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTA
* * * * * *
17222482 AACCCACCTGCGACCCTATCGATCCACGGCTTGCGCTTCCGGTCTCTCTAGCCGGCGTAGTGCC
838 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
* * * *
17222546 CGCCCGCCCGCCT----ACTCGTTTCGTCGGTTGGCTTAGGCTTACGGAGTTGATTCCCAGCCTA
1 CGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* ** * * * * * * ** *
17222607 AGATCAGACCGAATTGAGGGTTACGACAGCAGGATCAGAAGCACACAGAGTGAGG-CCTAGCCAA
66 AGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG-GGGGACCCGGCCGA
* * ** * * *
17222671 TCCCCGGCTTGTACATCCCGCCCCTCTGGCCGACTGAATGCCAGCATGCTCGTTTCTTGGGTTGA
130 TCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* *
17222736 CTTAGGCATATGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
195 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
** ** * * * ** *
17222801 TGGATTGAGGGTTGCGGCAGCACATGCTAGGCTCGAGCATGTGTTGGTGTTGCATTTTTCTTCGC
260 CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * * **
17222866 CGGGGCACCATCGTAAGAGCATCGCCGGAGAACCTCACCGACGGCATTGGGGTTCCGGTGATCGG
325 CGGGGCACCATCG-CAGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-G
* ** *
17222931 GGGGGCCAGGGGGGGTGTGCGCGCATGATGTGCGATGGGTGCTGGTACTTCACCCTTATTTTGGC
388 GGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
17222996 CCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
452 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
17223061 TTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTT
517 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * *
17223126 GTACACTTCGATTTTTTAGCTCAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTA
582 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* ** **
17223191 CCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTG
647 CCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
*
17223256 AAAATTATGAAAAATAGAAAACGAGTCGTCT
711 AAAATCATGAAAAATAGAAAACGAGTCGTCT
17223287 GGCCGATGTA
Statistics
Matches: 5972, Mismatches: 756, Indels: 384
0.84 0.11 0.05
Matches are distributed among these distances:
825 1 0.00
826 3 0.00
828 1 0.00
830 105 0.02
831 388 0.06
833 2 0.00
834 45 0.01
838 1 0.00
840 1 0.00
843 1 0.00
844 4 0.00
845 1 0.00
846 1 0.00
851 2 0.00
852 1 0.00
853 1 0.00
856 4 0.00
858 1 0.00
859 2 0.00
860 167 0.03
861 2 0.00
862 3 0.00
863 167 0.03
864 4 0.00
866 1 0.00
867 43 0.01
868 5 0.00
870 1 0.00
871 5 0.00
872 238 0.04
873 263 0.04
874 203 0.03
875 2 0.00
876 1 0.00
877 1 0.00
878 3 0.00
879 5 0.00
880 2 0.00
883 1 0.00
884 35 0.01
885 7 0.00
886 151 0.03
887 465 0.08
888 158 0.03
889 371 0.06
890 117 0.02
891 148 0.02
892 136 0.02
893 77 0.01
894 177 0.03
895 438 0.07
896 22 0.00
897 5 0.00
898 4 0.00
899 443 0.07
900 204 0.03
901 55 0.01
902 5 0.00
903 580 0.10
904 490 0.08
905 169 0.03
906 33 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
CGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
AGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGAT
CCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
GGGGCACCATCGCAGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
GTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACC
TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
Found at i:17218388 original size:26 final size:26
Alignment explanation
Indices: 17218352--17218404 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17218342 GTTGACTTAG
17218352 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17218378 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17218404 G
1 G
17218405 ATCGGACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17222770 original size:26 final size:26
Alignment explanation
Indices: 17222741--17222793 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17222731 GTTGACTTAG
*
17222741 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
17222767 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17222793 G
1 G
17222794 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17222875 original size:899 final size:899
Alignment explanation
Indices: 17221094--17223286 Score: 3071
Period size: 899 Copynumber: 2.4 Consensus size: 899
17221084 ATCACCGGAG
* * * *
17221094 AACCTGACCGACGGCACTGAGGTTCCGACGATCGGAGGGGCC-AGGGGGTGTGCGCACATGATGT
1 AACCTAACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
17221158 GCCATGGGTGCTGGTACTTGGCCTTTATATTGGCCCTCTATCCCTCATCAAACCTCTG-GAACTC
65 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-GAGAACTC
* * * * *
17221222 CCACCCCCTTAAAGGGCATTTGAGGCTTTACAGGTTTGTTGCCTGTAGCCATTAAAGTGTCTGAA
129 ACACCCCCTTAAAGAGCATTTGAAG-TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
17221287 ATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTT
193 ATG-GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTT
* * *
17221352 TGTGCATGCCAACAAAAATATAGGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAA
257 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
** *
17221417 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTTGTC
322 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTTGTC
* * * *
17221482 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGG
387 TTGCCATCAAACTTCACCTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGG
17221547 CATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
452 CATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
17221612 TGCATCCCGTCTCTCTGGCCGGCGCAGTGCCCGCTTGCCCGCCCGCCCGCTCGTTTCGTGCGTTG
517 CGCATCCCGTCTCTCTAGCCGGCGCAGTGCCCGC-TGCCCGCCCGCCCACTCGTTTCGTGCGTTG
* * * ** *
17221677 ATGTTGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGA
581 A-GTTGGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGAACCGAGGGTTACGACAGCAGGA
* * * * * * **
17221742 TCGGTAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGAGCATCCCGCCCCTCTGGCCGGTT
645 TCAGAAGCACACAAAGGAGGACCAGACCAATCCCCGGCTTGAGCATCCCGCCCCTCTGGCCGACT
* * *
17221807 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
710 GAACGCCAGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCAT
* *
17221872 ATGAAGTACATTCCAACTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCACATGCTGACCTCG
775 ACGAAGTACATTCCAACTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGACCTCG
* * *
17221937 GGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGC-CGAAGCACCGCCGAAA
840 AGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCAAG-AGCACCGCCGAAA
* *
17221997 AACCTAACCGACGGCATTGGGGTTTCGACAATCGGGGGTGCCGGGGGGGTTGTGCGCACATGATG
1 AACCTAACCGACGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGG-TGTGCGCACATGATG
* * * *
17222062 TGTGATGGGTGCTGGTACTTGGCCCCTATATTAGCCCCCTATCCTTCATCAAACCTCGAGAACTC
64 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
17222127 ACACCCCCTTAAAGAGCATTTGACAGTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTAAA
129 ACACCCCCTTAAAGAGCATTTGA-AGTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
17222192 ATGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTTGATTTTTTAGCTGAATTTTTTT
193 ATGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTT
*
17222257 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAA
258 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
17222322 AA-TTTGAAAACTCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTTGTCT
323 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTTGTCT
17222386 TGCCATCAAACTTCACCTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
388 TGCCATCAAACTTCACCTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
17222451 ATTTGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCGACCCTATCGATCCACGGCTTGC
453 ATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
17222516 GCTTCCGGTCTCTCTAGCCGGCGTAGTG-CC-C-GCCCGCCCGCCTACTCGTTTCGT-CGGTTG-
518 GCATCCCGTCTCTCTAGCCGGCGCAGTGCCCGCTGCCCGCCCGCCCACTCGTTTCGTGC-GTTGA
* * **
17222576 GCTTAGGCTTACGGAGTTGATTCCCAGCCTAAGATCAGACCGAATTGAGGGTTACGACAGCAGGA
582 G-TT-GGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGAACCGAGGGTTACGACAGCAGGA
*
17222641 TCAGAAGCACACAGAGTGAGG-CCTAG-CCAATCCCCGGCTTGTA-CATCCCGCCCCTCTGGCCG
645 TCAGAAGCACACAAAG-GAGGACC-AGACCAATCCCCGGCTTG-AGCATCCCGCCCCTCTGGCCG
* * * *
17222703 ACTGAATGCCAGCATGCTCGTTTCTTGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAAG
707 ACTGAACGCCAGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
* * * * * *** *
17222768 CATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATTGAGGGTTGCGGCAGCACATGCT-AGG
772 CATACGAAGTACATTCCAACTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGA-C
* ** * * * *
17222832 CTCGAGCATGTGTTGGTGTTGCATTTTTCTTCGCCGGGGCACCATCGTAAGAGCATCGCCGGAG
836 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCAAGAGCACCGCCGAAA
* ** *
17222896 AACCTCACCGACGGCATTGGGGTTCCGGTGATCGGGGGGGCCAGGGGGGGTGTGCGCGCATGATG
1 AACCTAACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGGTGTGCGCACATGATG
** * *
17222961 TGCGATGGGTGCTGGTACTTCACCCTTATTTTGGCCCCTTATCCCTCATCAAACCTCGAGAACTC
64 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
17223026 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
129 ACACCCCCTTAAAGAGCATTTGA-AGTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
17223091 ATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTCAATTTTTT
193 AT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTT
* * *
17223156 TATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
257 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
*** * *
17223221 AAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATTATGAAAAATAGAAAACGAGTCGTC
322 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTTGTC
17223286 T
387 T
17223287 GGCCGATGTA
Statistics
Matches: 1144, Mismatches: 129, Indels: 36
0.87 0.10 0.03
Matches are distributed among these distances:
897 1 0.00
898 4 0.00
899 445 0.39
900 140 0.12
901 56 0.05
902 5 0.00
903 235 0.21
904 127 0.11
905 130 0.11
906 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (899 bp):
AACCTAACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAAGTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTTGTCTTGC
CATCAAACTTCACCTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTAGCCGGCGCAGTGCCCGCTGCCCGCCCGCCCACTCGTTTCGTGCGTTGAGTTG
GCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGAACCGAGGGTTACGACAGCAGGATCAGAA
GCACACAAAGGAGGACCAGACCAATCCCCGGCTTGAGCATCCCGCCCCTCTGGCCGACTGAACGC
CAGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAAG
TACATTCCAACTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGACCTCGAGCATG
TGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCAAGAGCACCGCCGAAA
Found at i:17223490 original size:26 final size:26
Alignment explanation
Indices: 17223454--17223506 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17223444 GTTGAGTTAG
*
17223454 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
17223480 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
17223506 G
1 G
17223507 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:17225228 original size:197 final size:188
Alignment explanation
Indices: 17224853--17225242 Score: 485
Period size: 188 Copynumber: 2.0 Consensus size: 188
17224843 AGGCTTAAGG
* * * *
17224853 GACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGAATGTAGAAATATGAAGATGTGCCT
1 GACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGACT
* * *
17224918 AAACCCACTACCACCCTATCGATCCACAGCTTGTGCATCCCGTCTCTCTGGCCGGCATAGTGCCC
66 AAACCCACTACCACCCTATCGATCCACAGCTTGCGCATCCCGACTCTCTGGCCGACATAGTGCCC
* * * * *
17224983 GCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTGAGATCT
131 GCCCGCTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCA
*
17225041 GACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGACT
1 GACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGACT
* * * * * * *
17225106 AATCCCACCTACCACCCTATTGATCCACGGCTTGCGTATCCC-ACATTTCTGGTCGACGTAGTGC
66 AAACCCA-CTACCACCCTATCGATCCACAGCTTGCGCATCCCGAC-TCTCTGGCCGACATAGT--
**
17225170 CCGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGA
127 ------GCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGA
17225235 TCA
186 TCA
17225238 GACCA
1 GACCA
17225243 GACTGAAGGT
Statistics
Matches: 170, Mismatches: 22, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
188 67 0.39
189 43 0.25
197 60 0.35
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (188 bp):
GACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGACT
AAACCCACTACCACCCTATCGATCCACAGCTTGCGCATCCCGACTCTCTGGCCGACATAGTGCCC
GCCCGCTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCA
Found at i:17226053 original size:8 final size:8
Alignment explanation
Indices: 17226040--17226065 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
17226030 CGTAGTGCCC
17226040 GCCCGCCT
1 GCCCGCCT
17226048 GCCCGCCT
1 GCCCGCCT
17226056 GCCCGCCT
1 GCCCGCCT
17226064 GC
1 GC
17226066 TCATTTCGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.00, C:0.62, G:0.27, T:0.12
Consensus pattern (8 bp):
GCCCGCCT
Found at i:17226873 original size:873 final size:866
Alignment explanation
Indices: 17225047--17227117 Score: 2704
Period size: 873 Copynumber: 2.4 Consensus size: 866
17225037 ATCTGACCAC
* * *
17225047 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGACTAATCCC
1 TGTATGAATTTACAAGCCATAAAAATGGCATTGTCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * * * *
17225112 ACCTACCACCCTATTGATCCACGGCTTGCGTATCCC-ACATTTCTGGTCGACGTAGTGCCCG--C
66 ACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTC-TCTCTGGTCGGCGTAGTGCCCGCCC
*
17225174 CCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAG
130 CCGCCCGCCCGCTTATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAG
* **
17225239 ACCAGACTGAAGGTTACGGCAGCAAGATCGGCAGCACGCAGAGAGGGACCCGGTCGATCCCCAGC
195 ACCAGACTGAAGGTTACAGCAGCAAGATCGGCAGCACGCAGAGAGGGACCCGACCGATCCCCAGC
* *
17225304 TTGCGCATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTTATTTCGTGGGTTGACTTAGGCA
260 TTGCACATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTTATTTCGTGGGTTGACTTAGGCA
* * *** *
17225369 TACGGAGTTCATTCCCAATCTAAGTTTGGACCGAACCGAGGGTTGCAGCAGCACATACTGGGCAC
325 TACAGAGTTCATTCCCAATCTAAGATCAAACCGAACCAAGGGTTGCAGCAGCACATACTGGGCAC
* * * * *
17225434 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGTCGGGCCGGAGAACCTGGCAG
390 GAGAATGTGCTGGTGCCGCATTTTTCTTCATCAGGGCACCA-C-TC-GGCCAGAGAACCTGACAG
* * * * *
17225499 ACGTCATTGGGGTTCCAATGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGTGATGGGT
452 ACGGCATTGGGGTTCCAACGATCGAGGGGGCC-AGGGGGGTGTACGCACATGATGTGCGATGGGT
* *
17225564 GTAGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
516 GTAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
* *
17225629 AAAGAGCATTTGAGATTGTATAGGTTTGCAGCCAGTAGCCATTAAAGTGTCTGAAATGGGCACAC
581 AAAGAGCATTTGAGATTGTACAGGTTTGCAGCCAGTAGCCATTAAAGTGTCTGAAATAGGCACAC
17225694 TTTTTTCAAATGGTCAAAAAATCTTGTAAGCTTCTAGTTTTAAGCTGAATTTTTTTGTGCACGCC
646 TTTTTTCAAATGGTCAAAAAATCTTGTAAGCTTCTAGTTTTAAGCTGAATTTTTTTGTGCACGCC
* * *
17225759 AAAAGAAATACAAGGATCATGGCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAA
711 AAAAGAAATACAAAGATCACGGCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTAAAA
* * * **
17225824 AATCTCGAACGGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACAAGTCGTCTTCCCATGAAA
776 AATCTAGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACAAGTCGTCTTCCCATGAAA
*
17225889 CTTCACGTGAAGGCTTAAGGGACCAT
841 CTTCACGTGAAGGCTTAAGGGACAAT
17225915 TGTATGAATTTACAAGCCATAAAAATGGCATT-TGCATGCAGAAATATGAAGATGTGCCTAAACC
1 TGTATGAATTTACAAGCCATAAAAATGGCATTGT-CATGCAGAAATATGAAGATGTGCCTAAACC
*
17225979 CACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
65 CACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCC
* **
17226044 GCCTGCCCGCCTGCCCGCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCTTAGT
130 -CC-G--C-CC-GCCCG-CT--T-ATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGT
* * * * * *
17226109 CTAAGATCAGACCAGA-TCGAGGGTTGCAGTAGCAGGATCGGCAGTACGCAGAGGGGGACCCGAC
185 CTAAGATCAGACCAGACT-GAAGGTTACAGCAGCAAGATCGGCAGCACGCAGAGAGGGACCCGAC
* * * ** * *
17226173 CGATCCCCAGCTTGCACATCCCGCCCTTTTGGTCGGTTGAGCTTCCGTATGCTTATTTCGTGGGT
249 CGATCCCCAGCTTGCACATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTTATTTCGTGGGT
* * *
17226238 TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTGCAGCAGCTC
314 TGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAAACCGAACCAAGGGTTGCAGCAGCAC
* * *
17226303 ATACTGGGCTCGAGAATGTGCTGGTGCCGCTTTTTTCTTCATCGGGGCACCA-TC-GCCAGAGAA
379 ATACTGGGCACGAGAATGTGCTGGTGCCGCATTTTTCTTCATCAGGGCACCACTCGGCCAGAGAA
* * *
17226366 CCTGACCGGCGGCATTGGGGTTCCGACGATC-AGGGGGCC-GGGGGGTGTACGCACATGATGTGC
444 CCTGACAGACGGCATTGGGGTTCCAACGATCGAGGGGGCCAGGGGGGTGTACGCACATGATGTGC
*
17226429 GATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAATTCAC
509 GATGGGTG-TAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
*
17226493 ACCCCCTTAAAGAGCATTTGAGATT-TGACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
573 ACCCCCTTAAAGAGCATTTGAGATTGT-ACAGGTTTGCAGCCAGTAGCCATTAAAGTGTCTGAAA
* * ** *
17226557 TAAGG-ACATTTTTTTTCAAATGGTCACAAAATCTTGTACTCTT-TGAGTTTTTAGCTGAATTTT
637 T-AGGCACA-CTTTTTTCAAATGGTCAAAAAATCTTGTAAGCTTCT-AGTTTTAAGCTGAATTTT
* * *
17226620 TTTGTGCATGCCAAAA-AAATGCAAAGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
699 TTTGTGCACGCCAAAAGAAATACAAAGATCACGGCTACCAAGTTTGGGGCCAAAAATCCTTCC-A
* * *
17226684 AAAAATTTTAAAAAATCTAGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
763 AAAAAATTTAAAAAATCTAGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACAAGTCG
*
17226749 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAAT
828 TCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACAAT
*
17226788 TGTATGAATTTACAAGCCATAAAAATGGCATTGTCGTGCAGAAATATGAAGATGTGCCTAAACCC
1 TGTATGAATTTACAAGCCATAAAAATGGCATTGTCATGCAGAAATATGAAGATGTGCCTAAACCC
* * *
17226853 ACCTACCACCCTATCGATCCAC-AGCTTACGCATCCCGTCTCTCTGGTCGGCATAGTGTCCG---
66 ACCTACCACCCTATCGATCCACGA-CTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCC
* * * * **
17226914 CCGCTCGCTCG----TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGG
130 CCGCCCGCCCGCTTATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAG
* * * * * * *
17226975 ACCAGAC-CAAGGGTT-GAGATAGTAGGATCGACAGCA--CACAGAGGGACCCCG-CCGATCCCC
195 ACCAGACTGAA-GGTTACAG-CAGCAAGATCGGCAGCACGCAGAGAGGGA-CCCGACCGATCCCC
* ** * * * **
17227035 -GACTTACGGATCCTGCCCCTCTGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
257 AG-CTTGCACATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTTATTTCGTGGGTTGACTTA
*
17227099 GGCATACGGAGTTCATTCC
321 GGCATACAGAGTTCATTCC
17227118 TAGTCTATGC
Statistics
Matches: 1055, Mismatches: 120, Indels: 70
0.85 0.10 0.06
Matches are distributed among these distances:
853 1 0.00
854 82 0.08
855 7 0.01
856 69 0.07
864 4 0.00
865 1 0.00
866 1 0.00
868 114 0.11
869 3 0.00
870 1 0.00
871 3 0.00
872 189 0.18
873 277 0.26
874 9 0.01
875 35 0.03
876 5 0.00
877 4 0.00
879 2 0.00
880 248 0.24
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (866 bp):
TGTATGAATTTACAAGCCATAAAAATGGCATTGTCATGCAGAAATATGAAGATGTGCCTAAACCC
ACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCC
CGCCCGCCCGCTTATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA
CCAGACTGAAGGTTACAGCAGCAAGATCGGCAGCACGCAGAGAGGGACCCGACCGATCCCCAGCT
TGCACATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTTATTTCGTGGGTTGACTTAGGCAT
ACAGAGTTCATTCCCAATCTAAGATCAAACCGAACCAAGGGTTGCAGCAGCACATACTGGGCACG
AGAATGTGCTGGTGCCGCATTTTTCTTCATCAGGGCACCACTCGGCCAGAGAACCTGACAGACGG
CATTGGGGTTCCAACGATCGAGGGGGCCAGGGGGGTGTACGCACATGATGTGCGATGGGTGTAGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTGTACAGGTTTGCAGCCAGTAGCCATTAAAGTGTCTGAAATAGGCACACTTTTT
TCAAATGGTCAAAAAATCTTGTAAGCTTCTAGTTTTAAGCTGAATTTTTTTGTGCACGCCAAAAG
AAATACAAAGATCACGGCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTAAAAAATCT
AGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACAAGTCGTCTTCCCATGAAACTTCA
CGTGAAGGCTTAAGGGACAAT
Found at i:17227136 original size:26 final size:26
Alignment explanation
Indices: 17227100--17227150 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17227090 GTTGACTTAG
*
17227100 GCATACGGAGTTCATTCCTAGTCTAT
1 GCATACGGAGTTCATTCCCAGTCTAT
*
17227126 GCATACGGAGTTCTTTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
17227151 AGATTAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAT
Found at i:17227553 original size:348 final size:345
Alignment explanation
Indices: 17226919--17227573 Score: 972
Period size: 348 Copynumber: 1.9 Consensus size: 345
17226909 GTCCGCCGCT
* *
17226919 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCA
1 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCA
* * * *
17226984 AGGGTTGAGATAGTAGGATCGACAGCACACAGAGGGACCCCGCCGATCCCCGACTTACGGATCCT
66 AGGGTTGAGATAGAAGGATCGACAGCACACAGAGGGACCCCGCCGATCCCCGACCTACGCATCCC
*
17227049 GCCCCTCTGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
131 ACCCCTCTGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * * * ** * *
17227114 TTCCTAGTCTATGCATACGGAGTTCTTTCCCAGTCTAAGATTAGACCTGATTGAGGGTTGTGGCA
196 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCGAAGATCAGACCAGACCGAGGGTTGCGACA
*
17227179 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACTTTTTTCTTCGTCGTGGAAGCATCGCCGGAG
261 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGTGGAAGCATCGCCGGAG
17227244 AACCTGACCGCCCGCCCGTC
326 AACCTGACCGCCCGCCCGTC
* *
17227264 CGCTCGTTTCATCGGTTGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
1 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCA
* * * * * * **
17227329 AGGGTTGCGGTAGCAAGGATCGATAGCACGCAGAGGGGTA-CCCGACTGATCTCCGACCTGTGCA
66 AGGGTTGAGATAG-AAGGATCGACAGCACACAGA-GGG-ACCCCG-CCGATCCCCGACCTACGCA
*
17227393 TCCCACCCCTCTGGCCGGCTGAGC-CCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
127 TCCCACCCCTCTGACCGGCTGAGCGCCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* *
17227457 GTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCGAAGATCAGATCAGACCGAGGGTTG
191 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCGAAGATCAGACCAGACCGAGGGTTG
17227522 CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC
256 CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC
17227574 AGGGCACCAT
Statistics
Matches: 274, Mismatches: 31, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
345 72 0.26
346 17 0.06
347 10 0.04
348 175 0.64
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25
Consensus pattern (345 bp):
CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCA
AGGGTTGAGATAGAAGGATCGACAGCACACAGAGGGACCCCGCCGATCCCCGACCTACGCATCCC
ACCCCTCTGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCGAAGATCAGACCAGACCGAGGGTTGCGACA
GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGTGGAAGCATCGCCGGAG
AACCTGACCGCCCGCCCGTC
Found at i:17228385 original size:26 final size:26
Alignment explanation
Indices: 17228343--17228392 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
17228333 AACTTAGGCA
17228343 TACGGAGTTCATACCCAATCTAAGCG
1 TACGGAGTTCATACCCAATCTAAGCG
* * *
17228369 TACGGAGTTCTTTCCCATTCTAAG
1 TACGGAGTTCATACCCAATCTAAG
17228393 ATCGGATTGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATACCCAATCTAAGCG
Found at i:17228720 original size:26 final size:26
Alignment explanation
Indices: 17228690--17228742 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17228680 GTTAACTTAG
17228690 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
17228716 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17228742 G
1 G
17228743 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17229623 original size:26 final size:26
Alignment explanation
Indices: 17229586--17229638 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17229576 GTTGACTTAG
*
17229586 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
17229612 GCATACGGAGTTCTTTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
17229638 G
1 G
17229639 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:17230834 original size:26 final size:26
Alignment explanation
Indices: 17230797--17230847 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17230787 GTTGACTTAG
17230797 GCATACGAAGTTCATACCCAATCTAA
1 GCATACGAAGTTCATACCCAATCTAA
* * *
17230823 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATACCCAATCTA
17230848 TGATCGGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATACCCAATCTAA
Found at i:17232434 original size:26 final size:26
Alignment explanation
Indices: 17232397--17232449 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17232387 GTTCACTTAG
*
17232397 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17232423 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
17232449 G
1 G
17232450 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17233310 original size:26 final size:26
Alignment explanation
Indices: 17233280--17233332 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17233270 GTTGACTTGG
* *
17233280 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCGAGTCTAA
17233306 GCATACGGAGTTCATTCCGAGTCTAA
1 GCATACGGAGTTCATTCCGAGTCTAA
17233332 G
1 G
17233333 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCGAGTCTAA
Found at i:17235064 original size:26 final size:26
Alignment explanation
Indices: 17235035--17235087 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17235025 CCAGTCCAAT
17235035 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17235061 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17235087 C
1 C
17235088 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17235331 original size:893 final size:881
Alignment explanation
Indices: 17233426--17236045 Score: 3379
Period size: 893 Copynumber: 3.0 Consensus size: 881
17233416 CGTATGCCGT
17233426 AACCCTCAGTCTGGTCTGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCGACG--AA
1 AACCCTCAGTCTGGTCTGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAA
* * * * **
17233489 A-TGAGCGGGCGGGC---AGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGTTGTGGATCGA
66 AGCGGGCGGGCGGGCGGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * *
17233550 TAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATGTTTATGGCTT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTT
*
17233615 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCATTTTCT
196 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCT
* * * * * *
17233680 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAA-TTTCTTCGATAGGAGTT
261 ATTTTTCTCGA-TTTTCAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGA-AGGATTT
*
17233744 TTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG-ATGCATAAAAAAATTCAGCTA
324 TTG-CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * * *
17233808 AAACCTTGAAGTGTACAAGATTTTGTGACCATTTTAAGAAAGTGTCCCCATTTCAAACACTTTAA
388 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAA
* * *
17233873 TGGCTACTGGCAGCAAACCTGTAAATCTCAAATGCCCTTTAAGGGAGTGTGAGTTCTCGAGGTTT
453 TGGCTACTGGCAGCAAACCTGTAAAACTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
** *
17233938 GATGAGGGATAGGGCACCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTACGCACA
518 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG-ACATCATGT-CGCAC-
** * * * * *
17234003 CCCCCTAGCCCCCTCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGGTGCCC
580 CCCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGCCC
* * * * *
17234068 CGATGAAGAGAAA-TGCGGCCCCAACACATGCTCAAGCCCAACATGTGCTGCCGCAACCCTCGGT
645 CGATGAAGA-AAAGTGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* ** *
17234132 CTAG-CTCGATCTTAGGTTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
709 CCAGTC-CGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * ** * *
17234196 CAAGTTAACCCACGAAATGAGCGCGCGGGTGCTCAACGGGGTAGAGGGGCGGGATACGCAAGCCG
773 TAAGTCAACCCACGAAATGAGCGCG-GGGTGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCCG
* ** *
17234261 AGGATCGGTCAGGCCCCCCTCTGCATGCTACTGATCCTGCTACCGT
837 AGGATCGGTCAGGCCCCCCTATG-ATGCTACTGATCCTAATACCGC
* *
17234307 AACCCTCAGTTTGGTCTAATCTTAGACTGGTAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
1 AACCCTCAGTCTGGTCTGATCTTAGACTGG-AATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * * * *
17234372 TGAGCGGGCGGGTGGACGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCTAGCCATGGAT
65 -AAGCGGGCGGGCGGGCGGGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* *
17234437 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGG
128 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGG
* * *
17234502 CTTGTAAATTCATACAATGCTCCCTTAAGCCTT-GCGTGAAGTTTCATGGCAAGACGACTTATTT
193 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTT
* * *
17234566 TCTATTTTTCTCGATTTTCAAAGCCTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAT
258 TCTATTTTTCTCGATTTTCAAA-CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAT
* * *
17234631 TTTTGCCCCAAACTTGGAAGATGTGATCCATGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
322 TTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* * *
17234696 AAAAAGTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATATCAGACACTTTA
387 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTA
* *
17234761 ATGGCTACTGGTAGCAAACGTGTAAAACTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
452 ATGGCTACTGGCAGCAAACCTGTAAAACTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
17234826 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCAC
517 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG-ACATCATGT-CGCA-
*
17234891 GCCCTTCCCCCGTCCCCCCCGATCGTCGGAACCCCAACGCCGTCGGTCAGGTTCTCCGGCGATGG
579 -CCC--CCCCCG-CCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGG
* *
17234956 TGCCCCGGTGAAGAAAAGTGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCT
640 TGCCCCGATGAAGAAAAGTGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * *
17235021 CGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGATTGGGAATGAACTCCATAT
705 CGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTAT
* ** * *
17235086 GCCTAAGTCAACCCATGAAACAAGCGTGTGGGTGCTCAGCCGACCAGAAGGGCGGGATGCGCAAG
770 GCCTAAGTCAACCCACGAAATGAGCGCG-GGGTGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAG
* * ** * ***
17235151 CCGGGGATCGGTCGAGTCCCCCTCTATG-TG-TTGTCGATCTTAATGTGGC
834 CCGAGGATCGGTC-AGGCCCCC-CTATGATGCTACT-GATCCTAATACCGC
*
17235200 AACCCTCGGTCTGGTCTGATCTTAGACTGTGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
1 AACCCTCAGTCTGGTCTGATCTTAGACTG-GAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* *
17235265 CAAGCGGGCGGGCGGGCGGGCGAGCACTAAGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGAT
65 -AAGCGGGCGGGCGGGCGGGCG-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * ** *
17235330 CGATAGTGTGGGAGGTGGCCTT-GGACACATCTTCATATTTCTGTGTGCCAATGCCTTTTTTATG
128 CGATAGGGTGGTAGGTGGGTTTAGG-CACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATG
* * * * *
17235394 TCTTGTAAATTCATAAAACGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTT
192 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATT
* * * *
17235459 TTCTATTTTTCTTGATTTTTAAAACTTTTTACGGTTCGTGATTTTTTAAATTTTTTTTGGAAGGA
257 TTCTATTTTTCTCGA-TTTTCAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGA
* * * *
17235524 GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTTAG
321 -TTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
17235589 CTAAAAACTCGGTA-TGTACAAGATTTTGTGACCATTTGAAAAAAGTG-CCCCATTTCAAACACT
385 CTAAAAACTC-GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACT
* * * * *
17235652 GTAATGCCTACTGGCAGCAAACTTGTAAATCCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTCGA
449 TTAATGGCTACTGGCAGCAAACCTGTAAA-ACTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
17235717 GGTTTGTTGAGGGATAGGGGGCCAATATAAGGACCAAGTACCAGCACCCATCG----CA-----C
513 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGACATCATGTCGC
* ** *
17235773 A-CCCCCCGGCCCCCCC-ATCGTCGGAACCCCAATGCCCCCGGTTAGGTTCTCCGGCGATGCTCC
578 ACCCCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--C---G----
* *
17235836 GACGATGGTGCCCCGACGAAGAAAAGTGCGGCAGCAGCACATGCCCGAGCCCAGCATGTGCTGCC
633 G-CGATGGTGCCCCGATGAAGAAAAGTGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* *
17235901 GCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAA
697 GCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAA
* * * *
17235966 CTCCGTATGCCTATGTCAACCCACGAAATGAGCACGCGG-GCTCAGCCGGCCAGATGGGCGGGAT
762 CTCCGTATGCCTAAGTCAACCCACGAAATGAGCGCGGGGTGCTCAGCCGGCCAGAAGGGCGGGAT
*
17236030 GCGCAAGCCGTGGATC
827 GCGCAAGCCGAGGATC
17236046 AATAGGGTGG
Statistics
Matches: 1519, Mismatches: 179, Indels: 77
0.86 0.10 0.04
Matches are distributed among these distances:
877 30 0.02
878 8 0.01
879 5 0.00
880 1 0.00
881 30 0.02
882 31 0.02
883 1 0.00
884 3 0.00
885 1 0.00
886 47 0.03
887 3 0.00
888 192 0.13
889 269 0.18
890 139 0.09
891 1 0.00
892 12 0.01
893 425 0.28
894 125 0.08
895 194 0.13
896 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (881 bp):
AACCCTCAGTCTGGTCTGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAA
AGCGGGCGGGCGGGCGGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCT
ATTTTTCTCGATTTTCAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTT
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAACTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGACATCATGTCGCACCCCCCC
CGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGCCCCGATGA
AGAAAAGTGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCC
GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAATGAGCGCGGGGTGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCCGAGGATCGGT
CAGGCCCCCCTATGATGCTACTGATCCTAATACCGC
Found at i:17235961 original size:26 final size:26
Alignment explanation
Indices: 17235923--17235975 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17235913 CCGGTCCGAT
17235923 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
17235949 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
17235975 C
1 C
17235976 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17236683 original size:26 final size:26
Alignment explanation
Indices: 17236654--17236706 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17236644 CTGATCCGAT
* *
17236654 CTTAGACTAGGAATTAAGTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
17236680 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17236706 C
1 C
17236707 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17237591 original size:26 final size:26
Alignment explanation
Indices: 17237555--17237607 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17237545 CTGGTCCAAT
17237555 CTTAAACTGGGAATGAACT-TCGTATG
1 CTTAAACTGGGAATGAACTCT-GTATG
*
17237581 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCTGTATG
17237607 C
1 C
17237608 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCTGTATG
Found at i:17238080 original size:26 final size:26
Alignment explanation
Indices: 17238051--17238103 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17238041 CCGGTCCGAT
17238051 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17238077 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17238103 C
1 C
17238104 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17243367 original size:26 final size:26
Alignment explanation
Indices: 17243338--17243390 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17243328 CTGATCCGAT
*
17243338 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17243364 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17243390 C
1 C
17243391 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17244264 original size:26 final size:26
Alignment explanation
Indices: 17244228--17244280 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17244218 CTGGTCCAAT
17244228 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17244254 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17244280 C
1 C
17244281 CTAAATCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17245149 original size:26 final size:26
Alignment explanation
Indices: 17245113--17245165 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17245103 CTGGTCCGAT
17245113 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
17245139 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17245165 C
1 C
17245166 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17246958 original size:26 final size:26
Alignment explanation
Indices: 17246929--17246981 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17246919 CTGGTCCGAT
*
17246929 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17246955 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17246981 C
1 C
17246982 CTAAGACAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17246996 original size:27 final size:26
Alignment explanation
Indices: 17246940--17246998 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
17246930 TTAGACTAGG
* * * **
17246940 AATGAACTCTGTATGCTTAGACTAGG
1 AATGAACTCCGTATGCTAAGACAACC
17246966 AATGAACTCCGTATGCCTAAGACAACC
1 AATGAACTCCGTATG-CTAAGACAACC
17246993 AATGAA
1 AATGAA
17246999 ACGAGCGTGC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 14 0.52
27 13 0.48
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (26 bp):
AATGAACTCCGTATGCTAAGACAACC
Found at i:17247903 original size:900 final size:893
Alignment explanation
Indices: 17241718--17248837 Score: 9229
Period size: 900 Copynumber: 7.9 Consensus size: 893
17241708 GATCAGTCGG
* * ** * *
17241718 GTTCGGTCTAATCTTAGATTGGGAATGAACTCTATATGCCTAAGCCAACCAATGAAACGAGCGGG
1 GTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-----
** * *
17241783 CAGGCGGGCGGGCGGGCACTATGCCAGCCAGAG-GACGGGATGCGCAAGCTGTGGATCGATAGGG
61 -A--CGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* *
17241847 TGGTAGGTGGGTTAAGGCACATCTTCATATTTGTGCATGCCAATGCCATTTTTATGGCTTGTAAA
123 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
*
17241912 TTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
188 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* *
17241977 TCACGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGCC
253 TCACGATTTTTGAAACTTTTTGCGGTTC-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
*
17242042 CCAAACTTGGTAGAGGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
317 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
17242107 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCTATTTCAGACACTTTAATGGCTA
382 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
17242172 CTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGA
447 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * *
17242237 GGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCACACATCATGTGCACACACCCCC
512 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC
* * * * *
17242302 CGCGGCCCCCCCGATTGCCAGAGCCCCAATGCTGCCGGTCAGGTTCTCCGACGATGCTCCGACGA
576 C-C-GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGA
* *
17242367 TGGTGCCCCGACGAAGAAAAATGTC-ACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
639 TGGTGCCCCGACGAAGAAAAAT-ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * * * * ** * **
17242431 CCCTCGATCCGATCCAATCTTAGAATGCAAATGAACTCTGTATGCTTAGACTGGGAATGAACTTT
703 CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* *
17242496 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGATGCG
768 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * * ****
17242561 CAAGCCGGGGATCAG-CTGGGTCCCCCTCTACATGCTACCGATCTTGTTATTACAACCCTCA
833 CAAGCCGGGGATCAGTC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCA
** * *
17242622 G-TCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGAAGAAACG-A---
1 GTTC-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGG
** * * *
17242682 GCGGGCGGGCACTATGCCTGCTAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGG
65 GCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *
17242747 TGGGTTTAGGCACATCTTCACATTTCTGCTTGCCAATGCCATTTTCATGGCTTGTAAATTCATAC
130 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
17242812 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAAT
195 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** * ** *
17242877 TTTCAAAAATTTTTGCGGTTCAACATTTTTTAAAATTTTTTCGGAAGGCGTTTTGGCCCCAAACT
260 TTTTGAAACTTTTTGCGGTTC-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* *
17242942 TAGTAGACGTGATCCATGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAACTCGAAGTG
324 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
17243006 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTTGCAG
389 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
17243071 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAG
454 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
*
17243136 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
519 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCC
* * * * * * *
17243201 CCAATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGATGATGGTGCCCCA
584 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
* * *
17243266 ACGAAGAAAAATACGGCAGCAGCACATGGCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCTG
649 ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
* * * *
17243331 ATCCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAG
714 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
17243396 TCAACCCACGAAACAAGTGTACGGGCGCTCAGCCGGCCAGAGGGGTGGGATACGCAAGCCGGGGA
779 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * * *
17243461 TCGGCCGGGTCCCCCTCTTCGTGCTGTCGATCCTGCTGCCGTAGCCCTCA
844 TCAGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCA
* *
17243511 -TCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACAAGCGGG
1 GTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA-C--G
** *
17243575 TAGACGGGCGGGCGGGCACTATGCTGGCCAGAGAGA-GGGATGCGCAAGCCGTGGATCGATAGGG
60 -A-ACGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * *
17243639 TGGTTGGTGGGTTTAGGTACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
123 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
*
17243704 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTT
188 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * * *
17243769 TCATGATTTTTGAAACTTTTTTCGATTTGGGATTTTTTAAAATTTTTTCGGAAGGGGTTTTGGCG
253 TCACGATTTTTGAAACTTTTTGCG-GTTCGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
** * *
17243834 AAAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGTCATGCACAAAAAAATTCAGCTAAAAACT
317 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
17243899 CAAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
382 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
17243964 CCGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
447 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
17244029 GGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCTCCCATCGCACATCATGTGCGCACA-----
512 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * ** *
17244089 ----CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTT-TTCGGTGATGCTCCGATGATGG
577 CGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGG
* * * *
17244149 TGCCCCGACGAAGAAAAATATGGCACCAACACATGCCTGAGCCCAGCATGTGCTACCGCAACCCT
642 TGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
*
17244214 CGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
707 CGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * * *
17244279 GCCTAAATCAACCCACGAAACGAGCATGCGGGTGCTCAACCGGCCAGAGTGGCGGGATGCGTAAG
772 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * *
17244344 CCGAGGATCAG-CTGGGT-CCCC-CT-C-TG-T---GA----GCTGCTGTAACCCTCG
837 CCGGGGATCAGTC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCA
* * *
17244389 GTTCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
1 GTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGG
* * **
17244454 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCCCAAGCCGTGGATCGATAAAGTGGTAGGT
66 CGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
17244519 GGGTTTAGGCACATCTTCATATTTTTGCGTGTCAATGCCATTTTTATGGCTTGTAAATTCATACA
131 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
17244584 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATT
196 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
** * *
17244649 TTCAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGTAGGAGTTTTGGCCCCAAACTT
261 TTTGAAACTTTTTGCGG-TTCGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * * *
17244714 GGTAGACATGATCCTTGTATTTTTGTTGGCTTGCACAAAATAATTTAGCTAAAAACTCGAAGTGT
325 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
17244779 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGGTACTGGCAGC
390 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
17244844 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCGAGGTTTGATGAGGGATAGG
455 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
17244909 GGGTCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCGGCCC
520 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACACCCCCC-GCCC
* * * ** *
17244974 CCCCGATCGTCAGAACCCCAACGCCGTCGGTCAGGTTCTTTGACGATGCTCCGACGATGGTGGCC
582 CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
* * ** * * * * *
17245039 CGGCAAAGAAAAATGTGACACCAGCACATGCTCGAGCCCAGCACGTGCTGCCGCAAACCTCAGTC
647 CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* *
17245104 TGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTA
712 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
17245169 AGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCTAGAGGGGCGGGATGCGCAAGTCGGG
777 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * *
17245234 GATCAGTCGGGTCCCCTTCTGTGTGCTGCC-ATCCTGCTACCGCAACCCTCA
842 GATCAGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCA
* * ** * * *
17245285 G-GCTAGTCTTATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCGATGAAACGAGCGG
1 GTTC-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----
* *
17245349 GCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
61 AC--G--GGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
*
17245414 GTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
122 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
*
17245479 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTT
187 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * *
17245544 TTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAATGTGTTTTGG-
252 TTCACGATTTTTGAAACTTTTTGCGGTTC-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
*
17245608 CCCAAACTT-GTAGACGTGATCCTTGTACTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
316 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
17245672 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCT
381 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
17245737 ACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTC-CTGAGGTTTGAT
446 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-GAGGTTTGAT
* * **
17245801 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATCTATGCACACCC
510 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC
* ** * * *
17245866 CCCCGGCCCCCCGATCGTCGGAACCCCAATGCCATCGATCAGGTTCTCCTG-CGATGCTCTGGCG
574 CCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GACGATGCTCCGACG
** * ** * *
17245930 ATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCTAAGCCTAGCATGTGCTTACCGCA
638 ATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC-TGCCGCA
* * * * *
17245995 A-CCTCGGTCCGGTCCGATCGTAGATTGGGAATGAACTTCGTATACTTAGACTGGGAATGAACTC
702 ACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * ** *
17246059 CGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGTGTACTCAGTCGGCCAGAGGGGCGGGATGC
767 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * * * * *
17246124 GTAAGCCAGGGATCGGCCGGGTCCCCCTCTGCATCCTGCCGATCCTGCTGCCACAACCCTCA
832 GCAAGCCGGGGATCAGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCA
* *
17246186 G-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGG
1 GTTC-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----
* * *
17246250 GTGGGCGGGCACTAGGGCAGGTGGGTGGGCACTACATCGGCCAGAGAGACGAGATGCGCAAGCCG
61 ----------AC--GGGC----GGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCG
* **
17246315 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGTGTGCCAATGCCATTTT
110 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
17246380 TATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACC
175 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * **
17246445 CGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGTGGTTCCAAATTTTTTAAAATTTTTTCGGA
240 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTT-CGGATTTTTTAAAATTTTTTCGGA
** * *
17246510 ATTAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAT
304 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
17246575 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAC
369 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
17246640 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
434 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
17246705 CAAGGTTTGATGAGGGATAGGGGGCCAATGTAAGGGCCATGTACCAGCACCCATCACACATCATG
499 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
*
17246770 TGCGCACACCCCCCCTGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
564 TGCGCACA-CCCCCC-GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
** * *
17246835 ATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGTATG
627 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* * *
17246900 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTAG
692 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * * *
17246965 GAATGAACTCCGTATGCCTAAGACAACCAATGAAACGAGCGTGCGGGCACTCATCCAGCCAGAGG
757 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
** * * **
17247030 GGCGGGATGCATAAGTCGGGGATCAGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGTTGCA
822 GGCGGGATGCGCAAGCCGGGGATCAGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCA
*
17247095 ACCCTCG
887 ACCCTCA
17247102 GTTTCGGTCCAATCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACG
1 G-TTCGGTCCAATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACG
* * * * *
17247166 GGCAGGCGGGCACGTAC-CCGACCAATAGAGAC-AGATGCGCAATGCCATGGATCGATAGGGTGG
64 GGCGGGCGGGCAC-TACACCGGCC-AGAGAGACGGGATGCGCAA-GCCGTGGATCGATAGGGTGG
*
17247229 TAGGTGGGTTTAGGCACATC-TCATATTTCT-AACTG-CAATGGCCATCTTTTATGGCTTGGTAA
126 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAAT-GCCAT-TTTTATGGCTT-GTAA
* *
17247291 ATTCATACAGATGGT-CCTTAAGCCTTCACAATGGAAGTTTCAGTGGC-CGACGACTCG-TTTCT
187 ATTCATACA-ATGGTCCCTTAAGCCTTCAC-GT-GAAGTTTCA-TGGCAAGACGACTCGTTTTCT
* * * ** *
17247353 ACTTTT-ATGATTTTGGAAA-TTTTAAAACGGTT-GGTATTTTTTAAAATTTTTTCAGAAGGAGT
248 ATTTTTCACGATTTTTGAAACTTTT--TGCGGTTCGG-ATTTTTTAAAATTTTTTCGGAAGGAGT
* * * * * *
17247415 TATGATCCCAAACACTT-ATAGACCTGAT-CTTGTA-TTTTGTTGGCATGCA-ATAGAAAAAGTC
310 TTTG-GCCCCAA-ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA-A-AAAAATTC
* * *** * *
17247476 AGCTACAACCAAAAAGTGGTAACATGATTCTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
371 AGCTAAAAACTCGAAGT-GT-ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * * *
17247541 ACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTAAAATTCTATTTAAGGGGGTGCGAGTTCT
434 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
17247606 CAAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATG
499 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
*
17247671 TGCGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA
564 TGCGCACACCCCCCG-CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
* * * * *
17247736 TGCTACGGCAATGGTGCCTCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
628 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * * * *
17247801 GCTACCACAACCCTCGGTCTGATCTGATCTCAGACTGGGAATGAACTCCATATGCTTAGACTTGG
693 GCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * ** *
17247866 AATGAACTCTGTATGCCTAAGTCAACCCACTAAACGAGTGTGCGGGCGCTCAGTTGGCTAGAGGG
758 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* ** ** *
17247931 GCGGGATGTGCAAGCTAGGGATCAGTCGGGTCCCCCTCTGCGTGCTGCAAATCCTGCTACCGCAA
823 GCGGGATGCGCAAGCCGGGGATCAGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAA
17247996 CCCTCA
888 CCCTCA
* * * * * *
17248002 GTCCGG-----TCTTAGACTGGGAATGAACTTCATATGCTTAAGCCAACCAACGAAACAAACGGG
1 GTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAC---
* * *
17248062 TGGGTGGGCGGGCGGAC-ACTACGTCGGCTAGAGAGACGGGATGCGCAAGCCGTCGATCGATAGG
63 -GGGCGGGCGGGC--ACTAC-AC--CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
*
17248126 GTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
122 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* * * *
17248191 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACCCATTTTTTATTT
187 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * *
17248256 TTCACGATTTTTGAAACTTTTTACGGTTCAAGGATTTTTTTAAATTTTTTCGGATGCAGTTTTGG
252 TTCACGATTTTTGAAACTTTTTGCGGTTC--GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * * * * *
17248321 CACCAAACTTTGTAGATGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAAGTCAGCTAAAAA
315 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* *
17248386 CTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGC
380 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
17248451 TAATGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGCGTGAGTTCTCGAGGTTTGAT
445 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* *
17248516 GAGAGG-TAGGGGGCCAATATAAGGGCCAGGTACCAGCCCCCATCGCACATCATGTGCGCACACC
510 GAG-GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* *
17248580 CCCCGGCCCCTCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGAAGCT--G--
574 CCCC-GCCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGAC
* * * *
17248641 GA----GCCCCAATGAAGAAAATTACGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGCA
637 GATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
** * * *
17248702 ACCCTCGCACCGGTCCTATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTC
702 ACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * *
17248767 CGTATGCCTAAGTCAACTCACGGAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATAC
767 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
17248832 GCAAGC
832 GCAAGC
17248838 TGTGGATAGA
Statistics
Matches: 5493, Mismatches: 584, Indels: 290
0.86 0.09 0.05
Matches are distributed among these distances:
871 30 0.01
872 441 0.08
873 1 0.00
874 4 0.00
875 1 0.00
876 2 0.00
877 1 0.00
878 13 0.00
879 49 0.01
882 2 0.00
884 34 0.01
885 205 0.04
886 6 0.00
887 3 0.00
888 48 0.01
889 272 0.05
890 207 0.04
891 41 0.01
892 384 0.07
893 267 0.05
894 45 0.01
895 1 0.00
896 70 0.01
897 45 0.01
898 108 0.02
899 546 0.10
900 883 0.16
901 394 0.07
902 276 0.05
903 21 0.00
904 281 0.05
909 3 0.00
911 4 0.00
913 227 0.04
914 10 0.00
915 246 0.04
916 267 0.05
917 52 0.01
918 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
GTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGG
CGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
TTTGAAACTTTTTGCGGTTCGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCC
GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
AGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCA
Found at i:17248757 original size:26 final size:26
Alignment explanation
Indices: 17248721--17248773 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17248711 CCGGTCCTAT
17248721 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17248747 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17248773 C
1 C
17248774 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17252202 original size:26 final size:26
Alignment explanation
Indices: 17252158--17252210 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17252148 CCAGTCTGAT
17252158 CTTAGACTGGAAATAAACTCCGTATG
1 CTTAGACTGGAAATAAACTCCGTATG
* *
17252184 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATAAACTCCGTATG
17252210 C
1 C
17252211 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATAAACTCCGTATG
Found at i:17254302 original size:26 final size:26
Alignment explanation
Indices: 17254273--17254325 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17254263 CTGATCCGAT
* *
17254273 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
17254299 CTTAGAATGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
17254325 C
1 C
17254326 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:17256935 original size:26 final size:26
Alignment explanation
Indices: 17256899--17256949 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17256889 CCGGTCCAAT
17256899 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
17256925 CTTAGACTGGGAATGATCTCTGTAT
1 CTTAGACTGGGAATGAACTCTGTAT
17256950 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17258698 original size:26 final size:26
Alignment explanation
Indices: 17258669--17258721 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17258659 CCGATCTGAT
* *
17258669 CTTAGACTGAGAGTGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
17258695 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
17258721 C
1 C
17258722 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:17259568 original size:896 final size:896
Alignment explanation
Indices: 17257795--17261926 Score: 5218
Period size: 896 Copynumber: 4.6 Consensus size: 896
17257785 TGGTCTAATT
* *
17257795 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTACGGGCGCTCAACC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACC
* * * * *
17257860 GGCCAGAGGGACGGGATGAGCAAGCC-GAGGATGGGTCGGGTCCCCCTCTGCGTGCTG-TCGATC
66 GGCCAGAGGGGCGGGATGCGCAAGCCAG-GGAT-CGACCGGTCCCCCTCTGCGTGCTGCT-GATC
* * * *
17257923 TTGCTGTCGGAACCCTCGGTC-CGATCAGATCTTAGACTGGGAAAT-AACTCTGTATGCCTAAGC
128 CTGCTGCCGCAACCCTCGGTCTCGATCA-ATCTTAGACTGGG-AATGAACTCCGTATGCCTAAGC
** * * * *
17257986 CATTCGACGAAACGAGTGGGCAAGCGAGAGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCG
191 CAACCGACGAAACGAGCGGGC--G-G-GCGGG-CGACACTACGTCGGCCAGAGAGACGGGATGCG
* * * * * * *
17258051 GAAGCCGTGAATCGATAGGGTGCTAGGTGGGTTTAGGCACATTTTCATATTTC-AGCATGTCAAT
251 CAAGCCGTGGATCGATAGGGTGGTAGGTGGTTTTAGGCACATCTTCATATTTCTA-CGTGCCAAT
* *
17258115 GCCATTTTTATGGCTTGTAAATTCATACAATGGAT-CTTTAAGCCTTCACGTGAAGTTTCATGGA
315 GCCATTTTTATGGCTTGTAAATTCATACAATGG-TCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * * *
17258179 AAGACGACTCGTTTTTTATTTTTCACGA-TTTTGAAAGTTTTTTCAGTTTGGGATTTTTTAAAAT
379 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* * ** * * **
17258243 TTTTTCGGAAGGATTTTTGGCCCCAAAC-TTTTAGACGTGATCCTTGTATTTTTTTTGACGCGCA
444 TTTTTCGAAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
17258307 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
509 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
17258372 ATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCCAATGCTCTTTAATGGGGT
574 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
17258437 GTGAGTTCCCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
639 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA
* * * * **
17258502 GACATCATGTGTGCACACCCCCCAACCCCCCCGATTGCCGAAACCCCAATTTCGTCGGTCAGGTT
704 CACATCATGTGCGCACACCCCCC-AGCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTT
* ** * *
17258567 CTCCGACGTTGCTCCGAGGATGGTGGCCC-AACGAAGAAAAATGAAGCACTAGCACATGCCCAAG
768 CTCCGACGATGCTCCGAGGATGGT-GCCCTAACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * * *
17258631 CCCAGCATGTGCTGCCGCAACCTTCGGTCCGATCTGATCTTAGACTGAGAGTGAACTCTGTATGC
832 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
17258696 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGAGTGCTCAACC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACC
* * * * * * *
17258761 GACCAGAGGGGCAGGATGCGTAAGCCAGGGATCGACCGGCTCCCCCTCTGCATGCTACCGATCTT
66 GGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGG-TCCCCCTCTGCGTGCTGCTGATCCT
* ** * * * * *
17258826 GCTGCCGTAACCCTCAATCTGGTTCAATCATAGACTAGGAATGAACTCCATATGCCTAAGCCAAC
130 GCTGCCGCAACCCTCGGTCTCGATCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
17258891 CGACAAAACGAGCGGGCGGGCGGGCGACACTACGACAGCCAGAGAGATGGGATGCGCAAGCCGTG
195 CGACGAAACGAGCGGGCGGGCGGGCGACACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
**
17258956 GATCGATAGGGTGGTAGGTGGTTTTAGGCACATCTTCATATTTCTACGTGCCAATGTTATTTTTA
260 GATCGATAGGGTGGTAGGTGGTTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
* * * *
17259021 TGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAGGATGACTCG
325 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * *
17259086 TTTTCTATTTTTCACAATTTTTGAAA-TATTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGAAA
390 TTTTCTATTTTTCACGATTTTTGAAACT-TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAA
** *
17259150 GGAGTTTTGGCCCCAAACATGGTAGACACGATCCTTGTGTTTTTGTTGGCATGCACAAAAAAATT
454 GGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * * *
17259215 CAGCTAAAGACTCGAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGAGA
519 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
17259280 CTTTAATGGTTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGAGTGAGTTCTC
584 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
17259344 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAACATGT
649 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
* * *
17259409 GCGCACACCCCCCGGCCCCCCGGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACAAT
714 GCGCACACCCCCCAGCCCCCC-GATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAT
* * ** * *
17259474 GCTCTGGGGATGGTGCCCTGTCGAAGAAAAATGTGGCACCAGCAC-TGCCCGAGCCCAGCATATG
778 GCTCCGAGGATGGTGCCCTAACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * **
17259538 CTGTCGCAACCCTCGTTCCAGTCCGATCTTAGACTGGGAATGAACTTTGTATGC
843 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
17259592 TTAGACAGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACC
* * *
17259657 GGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGAGTCCCCCTCTGCGTGCTGCTGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCG-GTCCCCCTCTGCGTGCTGCTGATCCT
* ** *
17259722 GCTGCTGGTACCCTCGGTC-CGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAA
130 GCTGCCGCAACCCTCGGTCTCGATC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
17259786 CCGATGAAACAAGCGGGCGGGCGGGCGGGATGGCACTATGTCGGCCAGAGAGACGAGATGCGCAA
194 CCGACGAAACGAGCGGGCGGGCGGGC--GA---CACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * * * *
17259851 GCCGTGGATTGATAGGGTGATAGGTGGGTTTAGGTACATCTTCATATTTCTATGTGCCACTGCCA
254 GCCGTGGATCGATAGGGTGGTAGGTGGTTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
* *
17259916 TTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAAC
319 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
17259981 GACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
384 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *
17260046 C-AGATGGACTTTTGGCCCCACACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
449 CGA-AAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * * *
17260110 AAACTTTAGCTAAAAACTCGAAGTGAACAAGATTTTGTGACCATTTGAAAAAACTGTCCCTATTT
513 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * * * *
17260175 TATACACTTGAATTGCTACTGGTAGCAAACCTATAAAATCTCAAATGTTCTTTAAGGGGGTGTGA
578 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
17260240 GTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCAACCATCACACA
643 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
* * * * * *
17260305 TCATGTGCACACACCCCCCCGGCCCCCCGATCACCGGAACCCCAATGCTGTCGATCAGGTTCTCC
708 TCATGTGCGCACA-CCCCCCAGCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCC
** *
17260370 GGTGATGCTCCG-GCGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
772 GACGATGCTCCGAG-GATGGTGCCCTAACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * * *
17260434 GCATGTGTTGTCACAACCCTCGGTCTGGTCTGATTTTACACTGGGAATGAACTCCGTATGC
836 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
17260495 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGTGTACGGGCGCTC-AGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACC
* * * * * * * * ** *
17260559 AGCCAAAGGGGCGGGATGCACGAGTCGGGGATCGGCCAGGTCCCCCTCTGCATGCTATTAATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACC-GGTCCCCCTCTGCGTGCTGCTGATCCT
* ** * * * * **
17260624 ACTATCGCAACCCTTGGTCT-GGTCCGATCTTAGACTGGGAAAGAACTCCGTATGGTTAAGCCAA
130 GCTGCCGCAACCCTCGGTCTCGAT-CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * **
17260688 CCGATGAAACGAGTGGGCAGGCAAGAGGGCGGGCACTACACCGGCCAGAGAGACGGGAT-CTGCA
194 CCGACGAAACGAGCGGGC-GG---GCGGGC-GACACTACGTCGGCCAGAGAGACGGGATGC-GCA
* * * *
17260752 AGCCGTGGATCCATAGGGTGGTAGGTGGGTTTAAGG-ACATCTTCATATTTCTGCATGCCAATGC
253 AGCCGTGGATCGATAGGGTGGTAGGT-GGTTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
17260816 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
317 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
17260881 ACGACTCGTTTTCTATTTTTCTCAATTTTTGAAACTTTTTATGGTTCAGGATTTTTTAAAATTTC
382 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT-
* * * * *
17260946 TTTCTG-AAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGTCATGCAT
446 TTTC-GAAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
17261010 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCA
510 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
17261075 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTG
575 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
**
17261140 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGG
640 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAC
* ** * * *
17261205 ACATCATGTGTGCACACCCTCCCAGCCGCCCCGATCGTTGGAACCCCAATGCCGCCGGTCAAGTT
705 ACATCATGTGCGCACACCC-CCCAGCC-CCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTT
* * * *
17261270 CTCCGACGTTGCT-CAAGGATGGTGCCCCAACGAAGAAAAATGCGGCACTAGCACATGCCCGAGC
768 CTCCGACGATGCTCCGAGGATGGTGCCCTAACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * **
17261334 CTAGCATGTGCCGCCGCAACCTTCGGTGTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
833 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
17261398 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGCCACTCAACC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACC
* * **
17261463 GGCCAGAGGGGTGGGATGCGCAAACCAGGGATCGACCAGGTCCCCCTCTATGTGCTGCTGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACC-GGTCCCCCTCTGCGTGCTGCTGATCCT
* * * * * * *
17261528 GCTACCGCAACCCTCGATC-CTATCTGATCTTAGACTGGGAATGAACTCCGTACGCCTATGCTAA
130 GCTGCCGCAACCCTCGGTCTCGATC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
17261592 CTGACGAAACAAACGGGTGGGC-GG-G-CACTACGTCGACCAGAGAGACGGGATGCACAAGCTGT
194 CCGACGAAACGAGCGGGCGGGCGGGCGACACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
17261654 GGATCGATAGGGTGGTAGGTGGTTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
259 GGATCGATAGGGTGGTAGGTGGTTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
* * *
17261719 ATGGCTTGTAAATTCATACATTGGTCCCCTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTC
324 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * *
17261784 ATTTTCTATTTTTCACGATTTTTGAAACGTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAA
389 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAA
* * * ** *
17261849 GGAGTTTTGGCCCCAAACATGGCAGACATGATCCTTGTGTTTTTGTTGTTATGCACAAAAACATT
454 GGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
17261914 CAGCTAAAAACTC
519 CAGCTAAAAACTC
17261927 CGTATGCCTA
Statistics
Matches: 2785, Mismatches: 400, Indels: 98
0.85 0.12 0.03
Matches are distributed among these distances:
894 1 0.00
895 87 0.03
896 610 0.22
897 223 0.08
898 146 0.05
899 3 0.00
900 9 0.00
901 524 0.19
902 474 0.17
903 547 0.20
904 154 0.06
905 2 0.00
906 5 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (896 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACC
GGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGTCCCCCTCTGCGTGCTGCTGATCCTG
CTGCCGCAACCCTCGGTCTCGATCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAGCGGGCGGGCGGGCGACACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGTTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGG
AGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
GCACACCCCCCAGCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
CCGAGGATGGTGCCCTAACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
Found at i:17259615 original size:26 final size:26
Alignment explanation
Indices: 17259565--17259617 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17259555 CCAGTCCGAT
* **
17259565 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
17259591 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
17259617 C
1 C
17259618 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:17261400 original size:26 final size:26
Alignment explanation
Indices: 17261371--17261423 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17261361 GTGGTCCGAT
*
17261371 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17261397 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17261423 C
1 C
17261424 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17262261 original size:355 final size:355
Alignment explanation
Indices: 17261610--17262281 Score: 988
Period size: 355 Copynumber: 1.9 Consensus size: 355
17261600 ACAAACGGGT
* *
17261610 GGGCGGGCACTACGTCGACCAGAGAGACGGGATGCACAAGCTGTGGATCGATAGGGTGGTAGGTG
1 GGGCGGGCACTACGCCGACCAGAGAGACGGGATGCACAAGATGTGGATCGATAGGGTGGTAGGTG
* *
17261675 GTTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAT
66 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
17261740 TGGTCCCCTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTT
131 TGGTCCCCTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTT
* * * *
17261805 TTGAAACGTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACATG
196 TTGAAACGTTTTACGGTTCGAGATTTTTTAAAATTTTTTAGAAAGGACTTTTAGCCCCAAACATG
* * *
17261870 GCAGACATGATCCTTGTGTTTTTGTTGTTATGCACAAAAACATTCAGCTAAAAACTCCGTATGCC
261 GCAGACATGATCCATGTATTTTTGTTGTCATGCACAAAAACATTCAGCTAAAAACTCCGTATGCC
17261935 TAAGCCAACCGACGAAACGAGCGGGCGTGC
326 TAAGCCAACCGACGAAACGAGCGGGCGTGC
* ** *
17261965 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGTGCACGATGTGGATCGATAGGGTGGTAGGTG
1 GGGCGGGCACTACGCCGACCAGAGAGACGGGATGCACAAGATGTGGATCGATAGGGTGGTAGGTG
* * * **
17262030 GGTTTAGGTACATCTTCTTATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
66 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
** * * * * *
17262095 TGGTCCTTTAAGGCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATAATTT
131 TGGTCCCCTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTT
* * * * * *
17262160 TTGAAAC-TTCTTACGGTTTGGGATTTTTTAATATTTTTTAGGAAGGTCTTTTAGCCCCAAACGT
196 TTGAAACGTT-TTACGGTTCGAGATTTTTTAAAATTTTTTAGAAAGGACTTTTAGCCCCAAACAT
* *
17262224 GGTAGACGTGATCCATGTATTTTTGTTCG-CATGCACAAAAACATTCAGCTAAAAACTC
260 GGCAGACATGATCCATGTATTTTTGTT-GTCATGCACAAAAACATTCAGCTAAAAACTC
17262282 GAAGTGTACA
Statistics
Matches: 279, Mismatches: 36, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
354 2 0.01
355 276 0.99
356 1 0.00
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.33
Consensus pattern (355 bp):
GGGCGGGCACTACGCCGACCAGAGAGACGGGATGCACAAGATGTGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCCTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTT
TTGAAACGTTTTACGGTTCGAGATTTTTTAAAATTTTTTAGAAAGGACTTTTAGCCCCAAACATG
GCAGACATGATCCATGTATTTTTGTTGTCATGCACAAAAACATTCAGCTAAAAACTCCGTATGCC
TAAGCCAACCGACGAAACGAGCGGGCGTGC
Found at i:17263523 original size:374 final size:373
Alignment explanation
Indices: 17262784--17263531 Score: 1054
Period size: 374 Copynumber: 2.0 Consensus size: 373
17262774 CTGCTGCCGC
* * *
17262784 AACCCTCGGTCTAGTCCCATCTTAGACTAAGAATGAACTCCGTACGCCTAAGCCAACCGACGAGA
1 AACCCTCGGTCCAGTCCCATCTTAGACTAAGAAAGAACTCCGTACGCCTAAGCCAACCGACGAAA
* * * * *
17262849 CAAGTGGGCGGGCGGGTGGGTGGGCACTACGGCGGCCAGAGAGACGGGATGCACAAACCGTGGAT
66 CAAGCGGGCAGGCGAGAGGGTAGGCACTACGGCGGCCAGAGAGACGGGATGCACAAACCGTGGAT
* * *
17262914 AGATAGGGTGGTAGGTGGGTTTCGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGG
131 ACATAGGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGG
* *
17262979 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTT
196 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGAAAGACGACTCATTT
*
17263044 TCTATTTTTCATGTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTTCGAAAGGAG
261 TCTATTTTTCACGTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAA-TTTTTTCGAAAGGAG
**
17263109 TTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTCGCATGCA
325 TTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTCGCATGCA
* ** ** * * *
17263158 AACCCTTGGTCCAGTCTGATCTTAGACTGGGAAAGAACTCTGTATGCCTAAGCCAACTGACGAAA
1 AACCCTCGGTCCAGTCCCATCTTAGACTAAGAAAGAACTCCGTACGCCTAAGCCAACCGACGAAA
** * * ** *
17263223 TGAGCGGGTAGGCGAGAGGGTAGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGAT
66 CAAGCGGGCAGGCGAGAGGGTAGGCACTACGGCGGCCAGAGAGACGGGATGCACAAACCGTGGAT
*
17263288 CCATAGGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATT-CCAATGCCATTTTTATG
131 ACATAGGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC-TTGCCAATGCCATTTTTATG
* *
17263352 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGATGTTTCATGGAAAGACGACTCGTT
195 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGAAAGACGACTCATT
* * *
17263417 TTCTATTTTTCACGATTTTTGAAACTTTTTA-GGTTTGGGA-TTTTTTAAAA-TTTTTCGGAAGG
260 TTCTATTTTTCACG--TTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCGAAAGG
* * *
17263479 ATTTTTGGCCCCAAACTTGGTAGACATGGTCCTTGTATTTTTTTTGGCATGCA
323 A-GTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA-TTTTTTTCGCATGCA
17263532 CAAAAAAATT
Statistics
Matches: 329, Mismatches: 40, Indels: 10
0.87 0.11 0.03
Matches are distributed among these distances:
372 12 0.04
373 31 0.09
374 262 0.80
375 9 0.03
376 15 0.05
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (373 bp):
AACCCTCGGTCCAGTCCCATCTTAGACTAAGAAAGAACTCCGTACGCCTAAGCCAACCGACGAAA
CAAGCGGGCAGGCGAGAGGGTAGGCACTACGGCGGCCAGAGAGACGGGATGCACAAACCGTGGAT
ACATAGGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGAAAGACGACTCATTT
TCTATTTTTCACGTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCGAAAGGAGT
TTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTCGCATGCA
Found at i:17263922 original size:26 final size:26
Alignment explanation
Indices: 17263893--17263943 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17263883 CTGATCCGAT
* *
17263893 CTTAGATTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17263919 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
17263944 AACTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17264808 original size:26 final size:26
Alignment explanation
Indices: 17264770--17264822 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17264760 CTGGTCTGAT
* *
17264770 CTTAGACTAGGAATGAATTTTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
*
17264796 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
17264822 C
1 C
17264823 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:17265337 original size:887 final size:880
Alignment explanation
Indices: 17263158--17265468 Score: 3352
Period size: 887 Copynumber: 2.6 Consensus size: 880
17263148 TTCGCATGCA
* *
17263158 AACCCTTGGTCCAGTCTGATCTTAGACTGGGAAAGAACTCTGTATGCCTAAGCCAACTGACGAAA
1 AACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAA
* ** * *
17263223 TGAGCGGGTAGGCGAGAGGGTAGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGAT
66 CGAGCGGGCGGGCG-G-GCG--GGCACTACGACGGCCAGAGAGACGGGATGTGCAAGCCGTGGAT
* * *
17263288 CCATAGGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGG
127 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* *
17263353 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGATGTTTCATGGAAAGACGACTCGTTT
192 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCGTTT
* *
17263418 TCTATTTTTCACGATTTTTGAAACTTTTTA-GGTTTGGGATTTTTTAAAA-TTTTTCGGAAGGAT
257 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAG
* * *
17263481 TTTTGGCCCCAAACTTGGTAGACATGGTCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
322 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTCTTGGCATGCACAAAAAAATTCAGC
*
17263546 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTT
386 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
17263611 AATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTCGAGG
451 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
17263676 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGGACATCATGTGTGC
516 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
*
17263741 ACACCCCCCGACCCCCCGATCGCAAGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGTTGCTCC
581 ACACCCCCCGACCCCCCGATCGCAAGAACCCCAATGCCGTC-G-CAGG-T-TCCAGCGTTGCTCC
* *
17263806 GACGATGGTGCCCCGACGAAGAAAAATGCGGCAGCAGCACATGCCCGAGCCCAGCATGTGCTGCT
642 GACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT
* * *
17263871 GCAACCTTCGGTCTGATCCGATCTTAGATTTGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
707 GCAACCCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
17263936 CTCCGTATAACTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAGCTAGCCAAAGGGCGGGAT
772 CTCCGTATAACTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAGCTAGCCAAAGGGCGGGAT
* *
17264001 GCATAAGTCGGGGATCGGTCGGGTCCCCCTTTTCGTGCTGCCGT
837 GCATAAGTCGGGGATCGGTCGGGTCCCCCTTTTCGTCCTGCCGC
* ** * * *
17264045 AACCCTCGATCTGGTCCGATCTTAGACTGGGCATGAACTCTGTATGCCTAAGCCAGCTGACGAAA
1 AACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAA
* * *
17264110 CGAGCGGGCGGACGGGCGGGCGGGCACTATGAC-GACAAAGAGACGGGATGTGCAAGCCGTGGAT
66 CGAGC--G-GG-CGGGCGGGCGGGCACTACGACGGCCAGAGAGACGGGATGTGCAAGCCGTGGAT
* * * *
17264174 CGATAGAGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGC
127 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* * * *
17264239 CTTGTAAATTCAAAGAATGGTCCCTTAACCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
192 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCGTTT
*
17264304 TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAG
257 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAG
* * *
17264369 TTTTGGTCCCAAACTTGGTGGACGTGATCCTTGTATTTTTCTTGGCATGCAAAAAAAAATTCAGC
322 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTCTTGGCATGCACAAAAAAATTCAGC
* * *
17264434 TAAAAACCCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTT
386 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
17264499 AATGGCTATTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
451 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
*
17264564 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGC
516 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * *
17264629 ACACCCCCCGGCCCCCCGATCATCGA-AACCCCAATGCCG-C-C-GG-T-CAG-GTT-CTCCGAC
581 ACACCCCCCGACCCCCCGATC-GCAAGAACCCCAATGCCGTCGCAGGTTCCAGCGTTGCTCCGAC
* *
17264686 GATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCTGCA
645 GATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCA
* * * **
17264751 ACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAATTTTGTATGCTTAGACTGGGAATGAACTC
710 ACCCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* ** * * * * *
17264816 TGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC-CGGCAAGAGGGGCGGGATG
775 CGTATAACTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAGCTAGCCAA-A-GGGCGGGATG
*
17264880 CGTAAGTCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTACTGC
838 CATAAGTCGGGGATCGGTCGGGTCCCCCT-T---T--T--CG-TCCTGC--C-GC
* *
17264935 AACCCTCGGTCCAGTCTGATCTTAGACT-GGAATTGAACTCTGTATGCCCAAGCCAACCGACGAA
1 AACCCTCGGTCCAGTCTGATCTTAGACTGGGAA-TGAACTCTGTATGCCTAAGCCAACTGACGAA
* *
17264999 ACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
65 ACGAGCGGGCGGGCGGGCGGGCACTACGACGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGA
* * *
17265064 TAGGGTGGTAGGTGGGTTTATGCACATCTTCATATTTATGCATGCCGATGCCATTTTTATGGCTT
130 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
*
17265129 GTAAATTCATACATTGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCGTTTTCT
195 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCGTTTTCT
** ** * * *
17265194 ATTTTTCATAATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCTGAAGGAGTTT
260 ATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTT
* * ** *
17265259 AGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTCATTGGCATGCTCAAAAAAATTTTGTTAA
325 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTC-TTGGCATGCACAAAAAAATTCAGCTAA
*
17265324 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAAT
389 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
17265389 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGAGGGTGTGAGGTCTCGAGGTTT
454 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
17265454 GATGAGGGATAGGGG
519 GATGAGGGATAGGGG
17265469 AGCCGGGGGG
Statistics
Matches: 1274, Mismatches: 126, Indels: 48
0.88 0.09 0.03
Matches are distributed among these distances:
876 4 0.00
877 165 0.13
878 41 0.03
879 3 0.00
880 1 0.00
882 1 0.00
883 2 0.00
884 2 0.00
886 201 0.16
887 490 0.38
888 289 0.23
889 9 0.01
890 62 0.05
891 4 0.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (880 bp):
AACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAA
CGAGCGGGCGGGCGGGCGGGCACTACGACGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTT
GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTCTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCCGACCCCCCGATCGCAAGAACCCCAATGCCGTCGCAGGTTCCAGCGTTGCTCCGACGATGGT
GCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTC
GGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATA
ACTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAGCTAGCCAAAGGGCGGGATGCATAAGTC
GGGGATCGGTCGGGTCCCCCTTTTCGTCCTGCCGC
Found at i:17268157 original size:26 final size:26
Alignment explanation
Indices: 17268128--17268183 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
17268118 TGGGTTGACT
17268128 TAAGCATACGGAGTTCATTCCCAATC
1 TAAGCATACGGAGTTCATTCCCAATC
*
17268154 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAATC
17268180 TAAG
1 TAAG
17268184 ATCGGACTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAATC
Found at i:17269394 original size:914 final size:901
Alignment explanation
Indices: 17267255--17272221 Score: 3895
Period size: 890 Copynumber: 5.4 Consensus size: 901
17267245 GTTGACTTAG
* * * *
17267255 GCATACGGAGTTCATTCCCAGTCTAGGATCAGACTAGACCGAGGGTTGCGACAGCACATGCTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGG
* * **
17267320 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCGTCGCTGGAGCATCGTCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTC-ACGGGGCACCATC-CCAGAGCATCGTCGGAGA
* * * * * *
17267385 ACCTGACCGGTGACAATGGGGTTCCGGTGATC-GTGGGGCCGGGGGGGTTTGCGCACATGATGTG
129 ACCTGATCGGTGGCATTGGGGTTCTGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
17267449 CGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCTATCCCTCATCAAACCTTGAGAACTCACA
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
17267514 CCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTACCAGTAGCTATTAAAGTGTTTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATG
* * * *
17267579 GGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCCGAATGTTTTTGT
*
17267644 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTCCAAAAAAT
389 GCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTCCAAAAAAT
* ** *
17267709 TTTAAAAAATCCCGAACCGCCAAAAGTTTTGAAAATCGTGAAAAATAGAAAAACGAGTCGTCTTG
454 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAACGAGTCGTCTTG
*
17267774 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCAT
519 CCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCAT
* *
17267839 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAC
584 TGACATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAC
* *
17267904 ATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCCCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCT
649 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * *
17267969 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGCAAGATCG
714 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAAGATCG
* * *
17268034 GCGGCACAGAGAGGGAGACCCGACCGATCCCCGACTTGCGCATCTTGCCCCTCTGGTCGGCTGAA
779 ACAGCACAGAGAGGGAGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGTCGGCTGAA
** **
17268099 CACCCGCATGCTCATTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAATCTAA
844 CACCCGCACACTCATTTCGTGGGTTGACTTAAGCATACAAAGTTCATTCCCAATCTAA
* *
17268157 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGC-AGAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
17268221 CTCGAGCATGTGTTGGTGCCACATTTTT-TGTCGATGGGGCACCATCGCCAGAGCATCATCGGAG
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCT-TC-ACGGGGCACCATC-CCAGAGCATCGTCGGAG
* ** * * * *
17268285 AACCTTATCGACGGCATTGGGGTT-TCGATGATCGGGGTGGCCGGGGGGGTGTGAGCACAAGATG
128 AACCTGATCGGTGGCATTGGGGTTCT-GGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
*
17268349 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
17268414 ACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCTATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAA
*
17268479 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTGGCCGAATGTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCCGAATGTTTT
* *
17268544 TGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCAAAA
386 TGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTCC--AA
*
17268609 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATTAG-AAAACGAGTC
449 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAA-TAGAAAAACGAGTC
*
17268673 GTCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
513 GTCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAA
*
17268738 TGGCATTGAC-TCACAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGG
578 TGGCATTGACAT-ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
17268802 GTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCACCCGCTCACCCGCTCGCTCGCCCGCTCG
642 CTTGCACATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGC-C-CCC-C-CGCCCGCCCGCTCG
*
17268867 TTTCGTCGGTTGGCTTAGGCATACAGAGTTTATTCCCAGTCTAAGATCAGACCGGACCAAGGGTT
699 TTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTT
* *
17268932 GCGGCATCAGGATCGACAGCATGCAGAG-GGG-GACCCGACCGATCCCCGACTTGCGCATCCTGC
764 GCGGCAGCAAGATCGACAGCA--CAGAGAGGGAGACCCGACCGATCCCCGACTTGCGCATCCTGC
* * ** *
17268995 CTCTCTGGTCGGCT-AAGCACCCGTACACTTGTTTCGTGGGTTGACTTAGGCATACAAAGTTCAT
827 CCCTCTGGTCGGCTGAA-CACCCGCACACTCATTTCGTGGGTTGACTTAAGCATACAAAGTTCAT
*
17269059 TCCCAGTCTAA
891 TCCCAATCTAA
* * * * *
17269070 GCATAAGGAGTTCATTCCCAGTCGAAGATCGGACCGGACCAAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * * *
17269135 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCACCGGGGAACCATCATCAAAGAATCGCCAGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCA-CGGGGCACCATC-CCAGAGCATCGTCGGAGA
17269200 ACCTGATCGGTGGCATTGGGGTTCTGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
129 ACCTGATCGGTGGCATTGGGGTTCTGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
17269265 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
17269330 ACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAAT
*
17269395 GGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGA-TTTTA--C-AA-G--TTT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-ATTTTTAGCCGAATGTTTTT
* ** * * * * * * * * *
17269453 GCTACCAGTAGCCATTAAAGTGTCTAAAATAGGGA-CACTTTTTTCGAA---TGGTCACAAAA-T
387 G-T-GCA-TA-CCAACAAA------AATACAAGGATCAC-GTCTACCAAGTTTGGGCCCAAAACT
* *** ** **** ******** ** * * **
17269513 CTTGTACACTTCGAGTTTTTCGCTGAATTTTTTTGTGCATGCCAA----CAAAAATGCAAGGATC
441 CCT-T-C-C-AAAAAATTTT-AAAAAATCCCGAACCGCA--AAAAGTTTCAAAAAT-CATGAAAA
*** * * * *** * * ** *** **
17269574 AT-GTCTACCAAGT-TTGGGGCCA--AAAC-TCCCTTCGAAAGAATTTTAAAAAATCCCGAACCG
498 ATAGAAAAACGAGTCGTCTTGCCATGAAACTTCACGTC--AAG--GCTTAAGGGA--CC--ATTG
** * * * * * * *
17269634 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGATTCGTCTTGCCATGAAACTTCACATGAAG
555 TATGAA-TTT-ACAAACCAT-AAAAAT-G---GC-ATT-GACAT-ACA-GAAA--T---ATGAA-
* * ** ** ** * * *** * * * ***
17269699 GCTTTAGGGACCATTGTATGCATTTACAAGCCATAAAAATGGCATTGGCATGTAG-AAATAAGAA
603 G--AT-GTG-CC--TAAACCCACCTACCA-CCCTATCGAT-CCA-CGGC-T-T-GCACAT--CCC
* ** ** * ** ** * * ** ** * * **
17269763 GATGTGC-CTAAACCCACCTACGACCCTATCGATCCACGGCTTGCGCATCCCGTCTC-TCTGGCC
654 G-TCT-CTCT-GGCCGGCGTA-GTGCC---CGCCCCCCCGCCCGC-CCGCTCGTTTCGTC-GGTT
* * ** * * *** *** **
17269826 GGCGTAGTGC---CCGCCTGC--TCGCCCGCTCGTTTCATC-GGTTGG-CTTAGGGATATG-GAG
710 GGCTTAG-GCATACAGAGTTCATTC-CCAG-TC-TAAGATCAGACCGGACCAAGGG-T-TGCG-G
* * * ** * *
17269883 TTCATTCCCAGTCTAAGATTGGACCAG-ACCAAGTGTTACGGTAG-CAGGATCGGTAGCCCGTAG
768 --------CAG-C-AAGA-TCGA-CAGCA-C-AGAG--A-GGGAGACCCGA-CCG-ATCCC----
* * * * * * * *
17269946 AGGGGGACCCGACCGATCTCCAGCTTGTGCATCCCGTCCCTCTGGCCGACTGAGCACCCGCACGC
810 ---------CGA-C--T-TGC-GC--AT-CCT-GC--CCCTCTGGTCGGCTGAACACCCGCACAC
*
17270011 TCATTTCGTGGGTTAACTTAGTCATACGGAGTTCATTCCCAGTCTAAGCATACAGAATTCATTCC
855 TCATTTCGTGGGTTGAC----T--TA---AG--------CA---T-A-CA-A-AG--TTCATTCC
*
17270076 CAGTCTAA
894 CAATCTAA
** * * * *
17270084 GCATACAAAATTCATTCCCAGTCTAAGATCGAAATCGGACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGACAGCACATGCTGG
* * * * *
17270149 GCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGCCGGAGTATCG-CTGGA
65 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTC-ACGGGGCACCATC-CCAGAGCATCGTC-GGA
* ** * **
17270213 GAACCTGACCGACGGCATTGGGGTTC---CGA-C-----GATCGGGGGGGTGTGCGCACATGATG
127 GAACCTGATCGGTGGCATTGGGGTTCTGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* ** **
17270269 TACGATGGGTGCTGGTACTTGGCCCTTATATTCACCCCCTATCCAACATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
17270334 ACACCCTCTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAA
* * *** *
17270398 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAATTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCCGAATGTTTT
* *** * * * * * * *
17270463 TTTGCATGTGAACAGAAATGCAAGGATCAGGTCTTCCACGTTTGGGGCCAAAACCCCTTCCGAAA
386 TGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTCC-AAA
* * * *
17270528 AAATTTAAAAAAATCCCGAACCGTAAAAATTTTCAAAAATCATGAAAAATAG-AAAACGAGTCAT
450 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAACGAGTCGT
* ** *
17270592 CTTGCCATGAAACTTCACGTGAAGGCTTAAATGACCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATG
* ** *
17270657 GCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
580 GCATTGACATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * **
17270722 ACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG----CCCGCCCGTTCGCTCGTTTCGTCGGTT
645 GCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * ** ** * * *
17270783 GGCTTAGGCATACGGATTTCATTCCTAGTCTAAGATCAAACCAAACTGATGGTTACGGCAGCAGG
710 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAAG
* * *
17270848 ATC-AGCAGCAC-GTAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCTGCCCCTCTGGCCG
775 ATCGA-CAGCACAG-AGAGGGAGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGTCG
* * * * * * * * ** *
17270911 ACTGAGCGCCCGCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 GCTGAACACCCGCACACTCATTTCGTGGGTTGACTTAAGCATACAAAGTTCATTCCCAATCTAA
* ** * *
17270975 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGG
*
17271040 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCA-CGGGGCACCATC-CCAGAGCATCGTCGGAGA
* * * * ** *
17271105 ACCTGACCAGCGGCATTAGGGTTC---TGA-C-----GATC-GGGGGGTGTGTGCACATGATGTG
129 ACCTGATCGGTGGCATTGGGGTTCTGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
17271160 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTGGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAACTCAC
* * *
17271225 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTAAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAAT
* * * *** *
17271290 GGGGATAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAATTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCCGAATGTTTTTG
*** * * * * *
17271355 TGCATGTGAACAGAAATACAAGGATCAGGTCTTCCATGTTTGGGGCCAAAAC-CCTTTCCGAAAA
388 TGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCC-TTCC-AAAA
* * *
17271419 AATTTTAAAAAATCCCGAACCGTAAAATGTTTCAAAAATCATGAAAAATAG-AAAACGAGTCATC
451 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAACGAGTCGTC
* ** * *
17271483 TCGCCATGAAACTTCACGAGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGG
* * * * * * *
17271548 CATTCACACT-GAGAAAAATGAAGATGTACCTAAACCCACCTATCAGCCTATCGATCCACGCCTT
581 CATTGACA-TACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * * * * *
17271612 GCGCATCCCGTCTCTCAGGCCGACGTGGTGCCCGCCCGCCCACCTGCTCGTTCGTTTTGTCGGTT
645 GCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * ** * * *
17271677 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT-TGAACTGAACTGAGGGTTGTGGTAGCAG
710 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCAAGGGTTGCGGCAGCAA
* * * * *
17271741 GATCGGCAGCAC-GCAGAGGGGGACCCGGCCGATCCCC-AGCCTGCGCATCTTGCCCCTCTGG-C
774 GATCGACAGCACAG-AGAGGGAGACCCGACCGATCCCCGA-CTTGCGCATCCTGCCCCTCTGGTC
* ** * * * * ** *
17271803 TGGCTGAACGCCCGCATGCTTC-TTTCGTCGTTTGACTTAGGCAAACGGAGTTCATTCCCAGTCT
837 -GGCTGAACACCCGCACAC-TCATTTCGTGGGTTGACTTAAGCATACAAAGTTCATTCCCAATCT
17271867 AA
900 AA
**
17271869 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCCG-CAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTG-CGACAGCACATGCTGG
* * * * * * *
17271933 GCTCGGGCTTGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACAGGAGCATCATCGAAG
65 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTC-ACGGGGCACCATCCCA-GAGCATCGTCGGAG
** * ** *
17271998 AACCTGATCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCACACATGATGT
128 AACCTGATCGGTGGCATTGGGGTTCTGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
17272062 GTGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
17272127 CACCCCCTTAAAGACCATTTCAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAA
17272192 TGGGGACACTTTTTTCAAATGGTCACAAAA
322 TGGGGACACTTTTTTCAAATGGTCACAAAA
17272222 ATACAAAACG
Statistics
Matches: 3260, Mismatches: 568, Indels: 473
0.76 0.13 0.11
Matches are distributed among these distances:
888 4 0.00
889 99 0.03
890 478 0.15
891 47 0.01
893 6 0.00
894 315 0.10
895 5 0.00
896 1 0.00
897 3 0.00
898 1 0.00
900 3 0.00
901 90 0.03
902 101 0.03
903 377 0.12
904 5 0.00
905 209 0.06
906 3 0.00
908 5 0.00
909 5 0.00
910 4 0.00
911 14 0.00
912 14 0.00
913 232 0.07
914 298 0.09
915 35 0.01
916 11 0.00
917 51 0.02
918 12 0.00
919 9 0.00
920 5 0.00
921 6 0.00
922 6 0.00
923 3 0.00
924 2 0.00
925 1 0.00
926 1 0.00
927 4 0.00
928 5 0.00
929 3 0.00
930 4 0.00
932 1 0.00
935 5 0.00
936 1 0.00
938 1 0.00
939 2 0.00
940 2 0.00
941 4 0.00
942 12 0.00
943 10 0.00
944 5 0.00
945 11 0.00
946 16 0.00
947 19 0.01
948 22 0.01
949 6 0.00
950 7 0.00
951 8 0.00
952 1 0.00
955 2 0.00
956 3 0.00
957 18 0.01
958 19 0.01
959 11 0.00
960 7 0.00
961 2 0.00
962 7 0.00
963 3 0.00
964 4 0.00
965 3 0.00
966 7 0.00
967 4 0.00
968 1 0.00
970 3 0.00
971 1 0.00
972 3 0.00
973 2 0.00
974 6 0.00
975 8 0.00
977 5 0.00
978 3 0.00
979 1 0.00
980 1 0.00
981 3 0.00
982 7 0.00
984 1 0.00
985 3 0.00
986 1 0.00
987 3 0.00
988 36 0.01
989 3 0.00
990 3 0.00
991 1 0.00
992 1 0.00
994 3 0.00
995 6 0.00
996 5 0.00
997 4 0.00
998 6 0.00
999 2 0.00
1000 2 0.00
1001 16 0.00
1002 24 0.01
1003 14 0.00
1004 12 0.00
1005 96 0.03
1006 109 0.03
1007 3 0.00
1008 4 0.00
1009 3 0.00
1010 3 0.00
1011 5 0.00
1012 4 0.00
1014 44 0.01
1015 99 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACGGGGCACCATCCCAGAGCATCGTCGGAGAAC
CTGATCGGTGGCATTGGGGTTCTGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCCGAATGTTTTTGTGC
ATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTCCAAAAAATTT
TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTG
ACATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
GGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAAGATCGAC
AGCACAGAGAGGGAGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGTCGGCTGAACA
CCCGCACACTCATTTCGTGGGTTGACTTAAGCATACAAAGTTCATTCCCAATCTAA
Found at i:17269503 original size:88 final size:88
Alignment explanation
Indices: 17269350--17269532 Score: 303
Period size: 88 Copynumber: 2.1 Consensus size: 88
17269340 AGAGCATTTC
* * * * *
17269350 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAGTTTTTTCAAATG
1 AGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATG
17269415 GTCACAAAATCTTGTACACTTCG
66 GTCACAAAATCTTGTACACTTCG
*
17269438 AGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCGAATG
1 AGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATG
17269503 GTCACAAAATCTTGTACACTTCG
66 GTCACAAAATCTTGTACACTTCG
*
17269526 AGTTTTT
1 AGATTTT
17269533 CGCTGAATTT
Statistics
Matches: 88, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 88 1.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (88 bp):
AGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCG
Found at i:17270071 original size:26 final size:26
Alignment explanation
Indices: 17270033--17270110 Score: 129
Period size: 26 Copynumber: 3.0 Consensus size: 26
17270023 TTAACTTAGT
* *
17270033 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACAGAATTCATTCCCAGTCTAAG
17270059 CATACAGAATTCATTCCCAGTCTAAG
1 CATACAGAATTCATTCCCAGTCTAAG
*
17270085 CATACAAAATTCATTCCCAGTCTAAG
1 CATACAGAATTCATTCCCAGTCTAAG
17270111 ATCGAAATCG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (26 bp):
CATACAGAATTCATTCCCAGTCTAAG
Found at i:17270979 original size:26 final size:26
Alignment explanation
Indices: 17270949--17271001 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17270939 GTTGACTTAG
*
17270949 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17270975 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17271001 G
1 G
17271002 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17272089 original size:890 final size:880
Alignment explanation
Indices: 17269437--17272221 Score: 3611
Period size: 917 Copynumber: 3.1 Consensus size: 880
17269427 TGTACACTTC
* * * *
17269437 GAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCGAAT
1 GAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAT
*** ** *
17269502 GGTCACAAAATCTTGTACACTTCGAGTTTTTCGCTGAATTTTTTTGTGCATGCCAACAAAAATGC
66 GGTCACAAAATCTTGTACACTTCGAGTTTTTAATTGAATTTTTTTGTGCATGTGAACAGAAATGC
* * *
17269567 AAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCCTT-CGAAAGAATTTTAAAAAATCCCGAA
131 AAGGATCAGGTCTTCCAAGTTTGGGGCCAAAAC-CCCTTCCGAAAAAATTTTAAAAAATCCCGAA
* * * *
17269631 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGATTCGTCTTGCCATGAAACTTCAC-AT
195 CCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGA-
* * * *
17269695 GAAGGCTTTAGGGACCATTGTATGCATTTACAAGCCATAAAAATGGCATTGGCA-TGTAGAAATA
259 GAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTGCAGAAA-A
17269759 A-GAAGATGTGCCTAAACCCACCTACGACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
323 ATGAAGATGTGCCTAAACCCACCTAC-ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * * * *
17269823 GCCGGCGTAGTGCCCGCCTGCTCGCCCGCTCGTTTCATCGGTTGGCTTAGGGATATGGAGTTCAT
387 GCCGACGTAGTGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * ** * * *
17269888 TCCCAGTCTAAGATTGGACCAGACCAAGTGTTACGGTAGCAGGATCGGTAGCCCGTAGAGGGGGA
452 TCCCAGTCTAAGATT-GAACAAACTGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGGGGGA
* * * * *
17269953 CCCGACCGATCTCCAGCTTGTGCATCCCGTCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTC
516 CCCGACCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTC
* *
17270018 GTGGGTTAACTTAGTCATACGGAGTTCATTCCCAGTCTAAGCATACAGAATTCATTCCCAGTCTA
581 GT-GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-G------------G----
* * *
17270083 AGCATACAAAATTCATTCCCAGTCTAAGATCGAAATCGGACCGAGGGTTGCGGCAGCACATGCTG
628 AG---------TTCATTCCCAGTCTAAGATCG-GACCAGACCGAGGGTTGCGGCAGCACATGCTG
* * * * * *
17270148 GGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGCCGGAGTATCGCTGGA
683 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACAGGAGCATCTC-GGA
**
17270213 GAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGGTGTGCGCACATGATGTACGATGG
747 GAACCTGA-CGACGGCATTGGGGTTCCGACGATCGGGGGGGGTGTGC-CACATGATGTGTGATGG
* *
17270277 GTGCTGGTACTTGGCCCTTATATTCACCCCCTATCCAACATCAAACCTCGAGAACTCACACCCTC
810 TTGCTGGTACTTGGCCCTTATATT---CCCC-AT-C--CATCAAACCTCGAGAACTCACACCCCC
17270342 TTAAAGAGCATTT
868 TTAAAGAGCATTT
* *
17270355 GAGA-TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
1 GAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAT
* *
17270419 GGTCACAAAATCTTATACACTTCGAGTTTTTAATTGAATTTTTTTTTGCATGTGAACAGAAATGC
66 GGTCACAAAATCTTGTACACTTCGAGTTTTTAATTGAATTTTTTTGTGCATGTGAACAGAAATGC
* *
17270484 AAGGATCAGGTCTTCCACGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTAAAAAAATCCCGAAC
131 AAGGATCAGGTCTTCCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
*
17270549 CGTAAAAAT-TTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTG
196 CGT-AAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGAG
*
17270613 AAGGCTTAAATGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC-GCA-AAAATA
260 AAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTGCAGAAAA-A
*
17270676 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGG
324 TGAAGATGTGCCTAAACCCACCTA-CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* *
17270741 CCGACGTAGTGCCCGCCCGCCCGTTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGATTTCATT
388 CCGACGTAGTGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* ** * * *
17270806 CCTAGTCTAAGATCAAACCAAACTGATGGTTACGGCAGCAGGATCAGCAGCACGTAGAGGGGGAC
453 CCCAGTCTAAGATTGAA-CAAACTGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGGGGGAC
* *
17270871 CCGACCGATCCCC-GACTTACGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTC
517 CCGACCGATCCCCAG-CTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTC
* *
17270935 ATGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTA
581 GTG-GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* *
17271000 AGATCGGACCAGACCGAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
645 AGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATT
** * * *
17271065 TTTCTTCACCGGGGCACCATCGCCA-GAGCATCGTCGGAGAACCTGACCAGCGGCATTAGGGTTC
710 TTTCTTCGTCGGGGCACCATC-ACAGGAGCATC-TCGGAGAACCTGACGA-CGGCATTGGGGTTC
* * *
17271129 TGACGATCGGGGGGTGTGTG-CACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGC
772 CGACGATCGGGGGGGGTGTGCCACATGATGTGTGATGGTTGCTGGTACTTGGCCCTTATATT--C
*
17271193 CCCTTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTT
835 CCC--AT--C-CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
17271244 GAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTAAAATGGGGATAGTTTTTTCAAAT
1 GAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAT
*
17271309 GGTCACAAAATCTTGTACACTTCGAGTTTTTAATTGAATTTTTTTGTGCATGTGAACAGAAATAC
66 GGTCACAAAATCTTGTACACTTCGAGTTTTTAATTGAATTTTTTTGTGCATGTGAACAGAAATGC
* *
17271374 AAGGATCAGGTCTTCCATGTTTGGGGCCAAAACCCTTTCCGAAAAAATTTTAAAAAATCCCGAAC
131 AAGGATCAGGTCTTCCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
*
17271439 CGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTCGCCATGAAACTTCACGAGA
196 CGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGAGA
**
17271504 AGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTCACACTG-AGAAAAATG
261 AGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTGCAGAAAAATG
* * * *
17271568 AAGATGTACCTAAACCCACCTATCAGCCTATCGATCCACGCCTTGCGCATCCCGTCTCTCAGGCC
326 AAGATGTGCCTAAACCCACCTA-CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * *
17271633 GACGTGGTGCCCGCCCGCCCACCTGCTCGTTCGTTTTGTCGGTTGGCTTAGGCATACAGAGTTCA
390 GACGTAGTGCCCGCCCG--C-CC-GCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* ** *
17271698 TTCCCAGTCTAAGATTGAACTGAACTGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGG
451 TTCCCAGTCTAAGATTGAAC-AAACTGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGGGGG
* * * * * * *
17271763 ACCCGGCCGATCCCCAGCCTGCGCATCTTGCCCCTCTGGCTGGCTGAACGCCCGCATGCTTC-TT
515 ACCCGACCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGC-TCATT
* *
17271827 TCGTCGTTTGACTTAGGCAAACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
579 TCGT-GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* *
17271892 TAAGATCGGACCAGACCGAGGGTTGCCGCAGCACATGCTGGGCTCGGGCTTGTGCTGGTGCCACA
643 TAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACA
*
17271957 TTTTTCTTCGTCGGGGCACCATCACAGGAGCATCATCGAAGAACCTGATCGACGGCATTGGGGTT
708 TTTTTCTTCGTCGGGGCACCATCACAGGAGCATC-TCGGAGAACCTGA-CGACGGCATTGGGGTT
17272022 CCGACGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGTGATGGTTGCTGGTACTTGGCCCT
771 CCGACGATC-----GG--GGGGGGTGTGC-CACATGATGTGTGATGGTTGCTGGTACTTGGCCCT
*
17272087 TATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTT
828 TATATT---CCCC-AT-CC--ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
17272147 CAGATTTTACAGGTTTGCTGT-CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
1 GAGATTTTACAGGTTTGCT-TCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
17272211 TGGTCACAAAA
65 TGGTCACAAAA
17272222 ATACAAAACG
Statistics
Matches: 1669, Mismatches: 155, Indels: 101
0.87 0.08 0.05
Matches are distributed among these distances:
888 4 0.00
889 91 0.05
890 476 0.29
891 38 0.02
892 1 0.00
893 5 0.00
894 320 0.19
895 6 0.00
899 2 0.00
900 2 0.00
901 10 0.01
902 2 0.00
903 150 0.09
904 6 0.00
915 1 0.00
916 13 0.01
917 533 0.32
918 9 0.01
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (880 bp):
GAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAT
GGTCACAAAATCTTGTACACTTCGAGTTTTTAATTGAATTTTTTTGTGCATGTGAACAGAAATGC
AAGGATCAGGTCTTCCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
CGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGAGA
AGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTGCAGAAAAATG
AAGATGTGCCTAAACCCACCTACACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
ACGTAGTGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATTGAACAAACTGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGA
CCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT
CGTCGGGGCACCATCACAGGAGCATCTCGGAGAACCTGACGACGGCATTGGGGTTCCGACGATCG
GGGGGGGTGTGCCACATGATGTGTGATGGTTGCTGGTACTTGGCCCTTATATTCCCCATCCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
Found at i:17272950 original size:743 final size:746
Alignment explanation
Indices: 17271462--17272963 Score: 2065
Period size: 756 Copynumber: 2.0 Consensus size: 746
17271452 AAAAATCATG
*
17271462 AAAAATAGAAAACGAGTCATCTCGCCATGAAACTTCACGAGAAGGCTTAAAGGACCATTGTATGA
1 AAAAATACAAAACGAGTCATCTCGCCATGAAACTTCACGAGAAGGCTTAAAGGACCATTGTATGA
*
17271527 ATTTACAAGCCATAAAAATGGCATTCACACTGAGAAAAATGAAGATGTACCTAAACCCACCTATC
66 ATTTACAAGCCATAAAAATGGCATTCACACTGAGAAAAATGAAGATGTACCTAAACCCACCTACC
*
17271592 AGCCTATCGATCCACGCCTTGCGCATCCCGTCTCTCAGGCCGACGTGGTGCCCGCCCGCCCACCT
131 AGCCTATCGATCCACGCCTTGCGCATCCCGTCTCTCAGGCCGACGTAGTGCCCGCCCGCCCACC-
* * * *
17271657 GCTCGTTCGTTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGAACTGAA
195 GCGCGTTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATAGAACCGAA
* *
17271722 CTGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCAGCCTGCGC
260 CCGAGGGTTATGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCAGCCTGCGC
* * * * * * *
17271787 ATCTTGCCCCTCTGGCTGGCTGAACGCCCGCATGCTTCTTTCGTCGTTTGACTTAGGCAAACGGA
325 ATCCTGCCCCTATGGCCGGCTGAACGCCCGCACGCTTATTTCGTAGGTTGACTTAGGCAAACGGA
17271852 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
390 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * * *
17271917 CCGCAGCACATGCTGGGCTCGGGCTTGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCAC
455 CCGCAGCACAAGCTGGGCTCGAGCATGTGCTGCTGCCACATTTTTCTTCGTCGGGGCACCAT---
*
17271982 AGGAGCATCATCGAAGAACCTGATCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGT
517 ---A--ATCATCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGT
* * *
17272047 GTGCACACATGATGTGTGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCA
577 GTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
17272112 AACCTCGAGAACTCACACCCCCTTAAAGACCATTTCAGATTTTACAGGTTTGCTGTCAGTAGCCA
642 AACCTCGAGAACTCACACCCCCTTAAAGACCATTTCAGATTTTACAAGTTTGCTGCCAGTAGCCA
*
17272177 TTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCA
707 TTAAAGTGTCGAAAATGGGGACACTTTTTTCAAATGGTCA
* * * * * *
17272217 CAAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCATGTGGAGGCTTAAGGGACCATTGTATG
1 -AAAAATACAAAACGAGTCATCTCGCCATGAAACTTCACGAGAAGGCTTAAAGGACCATTGTATG
** * * *
17272282 AATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCATCTA
65 AATTTACAAGCCATAAAAATGGCATTCACACTG-AGAAAAATGAAGATGTACCTAAACCCACCTA
* ** * * *
17272346 CCA-CCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTTGCCGGCGTAGTGCTCGCCCGCCCG
129 CCAGCC-TATCGATCCACGCCTTGCGCATCCCGTCTCTCAGGCCGACGTAGTGCCCGCCCGCCCA
* * *
17272410 CC-CGC-TT-GTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAG-ACC
193 CCGCGCGTTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT-AGAACC
* * * * *
17272471 GGACCGATGGTTATGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGTCCGATCCCCGGCTTG
257 GAACCGAGGGTTATGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCAGCCTG
* * * * *
17272536 CGCATCCTGCCCC-ATGGCCGGCTGAGCTCCCGTACGCTTATTTCGTAGGTTGACTTAGGCATAT
322 CGCATCCTGCCCCTATGGCCGGCTGAACGCCCGCACGCTTATTTCGTAGGTTGACTTAGGCAAAC
* ** * *
17272600 GGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCTTAGTCTATGATCGGACTAGACCGAGGG
387 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
* * **
17272665 TTG-CGACAGCACAAGCTGGGCTCGAGCATGTGTTGCTGTCGTATTTTTCTTCGTCGGGGCA-C-
452 TTGCCG-CAGCACAAGCTGGGCTCGAGCATGTGCTGCTGCCACATTTTTCTTCGTCGGGGCACCA
* * * * *
17272727 T-ATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGCGATC-GGGGGGCCGGGGGCGAGGT
516 TAATCATCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGG-G-GGT
* *
17272790 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCA
577 GTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
17272855 AACCTCGAGAAGTCACACCCCCTTAAAGAGCATTTCAGATTTTACAAGTTTGCTGCCAGTAGCCA
642 AACCTCGAGAACTCACACCCCCTTAAAGACCATTTCAGATTTTACAAGTTTGCTGCCAGTAGCCA
* *
17272920 TTAAAGTGTCGGAAATGGGGACTCTTTTTTCAAATGGTCA
707 TTAAAGTGTCGAAAATGGGGACACTTTTTTCAAATGGTCA
17272960 AAAA
1 AAAA
17272964 TCTTGTACAC
Statistics
Matches: 661, Mismatches: 77, Indels: 30
0.86 0.10 0.04
Matches are distributed among these distances:
739 8 0.01
740 37 0.06
741 3 0.00
742 5 0.01
743 161 0.24
749 1 0.00
750 3 0.00
751 150 0.23
752 116 0.18
753 3 0.00
754 2 0.00
755 4 0.01
756 168 0.25
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (746 bp):
AAAAATACAAAACGAGTCATCTCGCCATGAAACTTCACGAGAAGGCTTAAAGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTCACACTGAGAAAAATGAAGATGTACCTAAACCCACCTACC
AGCCTATCGATCCACGCCTTGCGCATCCCGTCTCTCAGGCCGACGTAGTGCCCGCCCGCCCACCG
CGCGTTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATAGAACCGAAC
CGAGGGTTATGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCAGCCTGCGCA
TCCTGCCCCTATGGCCGGCTGAACGCCCGCACGCTTATTTCGTAGGTTGACTTAGGCAAACGGAG
TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
CGCAGCACAAGCTGGGCTCGAGCATGTGCTGCTGCCACATTTTTCTTCGTCGGGGCACCATAATC
ATCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCACACA
TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
AACTCACACCCCCTTAAAGACCATTTCAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGT
CGAAAATGGGGACACTTTTTTCAAATGGTCA
Found at i:17274376 original size:903 final size:901
Alignment explanation
Indices: 17272218--17276110 Score: 5203
Period size: 903 Copynumber: 4.3 Consensus size: 901
17272208 AAATGGTCAC
* *
17272218 AAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCATGTGGAGGCTTAAGGGACCATTGTATGA
1 AAAAATACAAAACGAGTCCTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGA
*
17272283 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCATCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
17272348 ACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTTGCCGGCGTAGTG--C-TCGCCCGCCCG
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCGCCCG
* * *
17272410 CCCGCTTGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGAC
196 CCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * *
17272475 CGATGGTTATGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GTCCGATCCCCGGCTTGCGC
261 CGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGT-CGATCCCCGGCTTGCAC
* * ** * * *
17272539 ATCCTGCCCC-ATGGCCGGCTGAGCTCCCGTACGCTTATTTCGTAGGTTGACTTAGGCATATGGA
325 ATCCTGCCCCTATGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
** ** * * * *
17272603 GTTCATTCCCAGTCTAAGCATATGGAGTTCATTCTTAGTCTATGATCGGACTAGACCGAGGGTTG
390 GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCAAAGATCGGACCAGACCGAGGGTTA
* * * * * *
17272668 CGACAGCACAAGCTGGGCTCGAGCATGTGTTGCTGTCGTATTTTTCTTCGTCGGGGCA-C-T-AT
455 CGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCAT
* *
17272730 C---G--T---CGGAGAACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGCCGGGGGCGA
520 CGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC--GGG-G-
*
17272787 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCA
581 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
17272852 TCAAACCTCGAGAAGTCACACCCCCTTAAAGAGCATTTCAGATTTTACAAGTTTGCTGCCAGTAG
646 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAG
* *
17272917 CCATTAAAGTGTCGGAAATGGGGACTCTTTTTTCAAATGGTCA-AAAATCTTGTACACTTCGAGT
711 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* **
17272981 TTTTAGTTGAATTTTTTTGTGCATGCCAAAAAAGTTACAAGGATCACGTCTACCAAGTTTGGGGC
776 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
17273046 CAAAACTCCTTCCT-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
841 CAAAACTCCTT-CTAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
* *
17273107 AAAAATACAAAACGAGTCCTCTTGCCATGAAACTTCATGTGAAGGCCTAAGGGACCATTGTTTGA
1 AAAAATACAAAACGAGTCCTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGA
*
17273172 ATTTACAAGCCATAAAAATGGCATTGGCATTGGCACACAGAAATATGAAGATGTGCGTAAA-CCA
66 ATTTACAAGCCATAAAAATGGCATTGGCA-T-G----CAGAAATATGAAGATGTGCCTAAACCCA
*
17273236 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGACGACGTAGTG--C-CCGCC
125 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCC
* * *
17273298 CGCCCGCACGCTCGTTTCGTTGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTCAGATCAGA
190 CGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * *
17273363 CCAGACCAAGGGTTACGGCAGCAGGATCGGCAGCACGTAGTGGGGGACCCGGCCGATCCCCGGCT
255 CCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCT
** * * *
17273428 TGCACATCCCACCCTTATGGCCGGCTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCAT
320 TGCACATCCTGCCCCTATGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
* * * * * *
17273493 ACGGATTTCATTCCCAGTCTAAGCATACAGTGTTCATTCTCAGTCTAAGATCGAACCGGACCGAG
385 ACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCAAAGATCGGACCAGACCGAG
* * * * * * * **
17273558 GGTTGCGGCAGTACATGCTTGGCTC-AGGCATGTGTTGGTGCCGCATTTTTCTTTGCCAGGGTGC
450 GGTTACGACAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCAC
* *
17273622 CATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGAGGGGCCG
514 CATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCG
* * * * * * *
17273687 GGGGGTGTGTGCACATGATGTGCGATTGGTGTTGATACTTGGCTCTTGTATTGGCCCCATATCCC
578 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
17273752 TCATCAAACCTCGAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
643 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAG
17273817 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
708 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
17273882 CA-TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAACTTTG
773 -AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * *
17273946 GGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCAAG
837 GGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
* * * *
17274011 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATACAAAACGAGTCCTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGA
* * *
17274076 ATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATAAGAAGATGTG-GTGAAACCCACCTAC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT-AAACCCACCTAC
* ** * *
17274140 CACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGTGTGGTGCCCGCCTGCCCTCC
130 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC-GCCCGCC
* * * * *
17274205 CGCCCGCTCGTTTCATCGGTTAGCTTAGGCATACGGAGTTCATACCCAGTCTAAGATCAGATCAG
194 CGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * *
17274270 ACCGAGGGTTGCAGCAGCAAGATTGGCAGCACGCAGAGGGGGACCCGGTTGATCCTCGGCTTGCA
259 ACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCA
* * * * *
17274335 CAACCTGCCCCTCTGGTCGGTTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGG
324 CATCCTGCCCCTATGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* *
17274400 AGTTCATTCCTAGTCTAAGCATA-AGGAGTTCATTCCCAGTCAAAGATCGGATCAGACCGAGGGT
389 AGTTCATTCCCAGTCTAAGCATACA-GAGTTCATTCCCAGTCAAAGATCGGACCAGACCGAGGGT
* * *
17274464 TACGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATC
453 TACGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATC
* * * * * * * *
17274529 GTCGGAGCATCACCGAAGAACCTGATCGGTGGCGTTGGGGTTCTGACGATCGGGGGGGCGAGGGG
518 ATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCG-GGGG
* * * * *
17274594 GTATACGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTGAT
582 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
**
17274659 CAAACCTCGAGTGCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGC
647 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGC
* *
17274724 CATGAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTT
712 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* ** * * * *
17274789 TTTAGCTGAATTGTTTTGTGCATGCCATCAAAAATATAAGCATCATGTCTACCAAATTTGGGGCC
777 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* *
17274854 AAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATG
842 AAAACTCCTTCTAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
* *
17274914 AAAAATACAAAACGAGTCCACTTGCCATGAAACTTCATGTGAAGGCCTAAGGGACCATTGTATGA
1 AAAAATACAAAACGAGTCCTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGA
**
17274979 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
17275044 ACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGTCCGCCC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCG-CC-CGC
* * *
17275109 GCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACC
193 -CCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * ** ** * * * * *
17275174 AAACTGAGGGTTGTGATAGC-GGATTGGCAGCATGCATAGGGGGACCCGGTTGATCTCCGGCTTG
257 AGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTG
** * *
17275238 CGTATCC-GCCCCT-CGGCCGGCTGAGCGCCCG-ACGCTCGTTTCGTGGGTTGACTTAGGCATAC
322 CACATCCTGCCCCTATGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
* *
17275300 GGAGTTCATTCCCAGTCTAAGCATACATAGTTCATTCCCAGTCAAAGATCGGACCGGACCGAGGG
387 GGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCAAAGATCGGACCAGACCGAGGG
* * ** *
17275365 TTATGGCAGCACATGCTGGGCTC-AGGCATGTGCTGGTGCTACATTTTTCTTCGTTAGGGCACCA
452 TTACGACAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCA
** * * *
17275429 TCGA-CGGAGCATCGTAGGAGAACCTGACCGGTGGCATTGGGGTTTCGACGATCGGGGGGGACGG
516 TC-ATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG-C-C
*
17275493 GGAGGGGCGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
577 GG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
17275558 CCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACC
641 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCC
17275623 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA-ACAT
706 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-T
* * * * * * * *
17275687 T-GACTTTTTTGCTGAATTTGTTTGTGCATGCGAACAAAAATATAGGGATCACGTCTACCAAGTA
770 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
* * *
17275751 TGGGACCAAAACTCCTT-TCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGCTTCAAAAATT
835 TGGGGCCAAAACTCCTTCT-AAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
*
17275815 GTG
899 ATG
* * * ** *
17275818 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGCAAAGGCTTAAAGGACCATTGTATGA
1 AAAAATACAAAACGAGTCCTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGA
*
17275883 ATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * ** * * * *
17275948 ATCCTATCGATCCACGGCCTGCATATCCTGTCTCTCTGGTCGACGTAGTGCCCGCCCACCCGCCT
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCGCCCGCCC
* * * * *
17276013 GCCCGCTCATTTCATTGGTTGGCTTAGGCATACGGAGTTTATTCCCCGTCTAAGATCAGGCC-GA
195 GCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* ** * *
17276077 CTGAGGGTTGTGGTAGCAGGATCGGTAGCACGCA
260 CCGAGGGTTACGGCAGCAGGATCGGCAGCACGCA
17276111 AGTTTGATTT
Statistics
Matches: 2644, Mismatches: 311, Indels: 86
0.87 0.10 0.03
Matches are distributed among these distances:
889 90 0.03
890 1 0.00
891 1 0.00
894 186 0.07
895 170 0.06
896 1 0.00
897 3 0.00
898 22 0.01
899 54 0.02
900 17 0.01
901 71 0.03
902 198 0.07
903 967 0.37
904 519 0.20
905 228 0.09
906 110 0.04
907 6 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
AAAAATACAAAACGAGTCCTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCGCCCG
CCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
CGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCACA
TCCTGCCCCTATGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
TTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCAAAGATCGGACCAGACCGAGGGTTAC
GACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCATC
GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGT
GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATT
AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
CTCCTTCTAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
Found at i:17278120 original size:26 final size:26
Alignment explanation
Indices: 17278082--17278134 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17278072 CTAGTCCGAT
*
17278082 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
17278108 CTTATACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
17278134 C
1 C
17278135 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17278849 original size:26 final size:26
Alignment explanation
Indices: 17278813--17278865 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17278803 CTGGTCCGAT
17278813 CTTAGACTGGGAATGAACTTCC-TATG
1 CTTAGACTGGGAATGAAC-TCCGTATG
17278839 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17278865 C
1 C
17278866 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17279710 original size:26 final size:26
Alignment explanation
Indices: 17279681--17279733 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17279671 CTGGACCCAT
*
17279681 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17279707 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17279733 C
1 C
17279734 CTAAGTCAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17280614 original size:26 final size:26
Alignment explanation
Indices: 17280585--17280637 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17280575 CCGATCTGAT
*
17280585 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17280611 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17280637 C
1 C
17280638 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17281156 original size:903 final size:898
Alignment explanation
Indices: 17279253--17283794 Score: 5466
Period size: 903 Copynumber: 5.1 Consensus size: 898
17279243 ATTTTTCACG
* * * * *
17279253 ATTTTTTTCGAAATGAGTTTTGGGCCCAAACATGGTAGATGTGATACTTGTATTTTTGTTGGCAT
1 ATTTTTTT-GGAAGGAGTTTT-GGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* * *
17279318 GCACAAAAAAATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAAAAGAGTGAC
64 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* ** *
17279383 CCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAGGATCTCAAATG-CTCTTTATGG
129 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCT-TTTAAGG
* * * * *
17279447 GGGTGTGACTTCTCGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
193 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAAAATAAGGGCCAAGTACTAGCACCC
* * * * *
17279512 ATCACACATCATGTGCGCACA-CCCCCT--GCCCCCCGATCGCCGGAACCCCAATGCCACTGGTC
258 ATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCGATCGACGAAACCCCAATGCCGCCGGTC
* * * *
17279574 AGGTTCTCCGACGATGCTCCGACGATGGTGGCTCGGTGAAGAAAAATACAGCACCAGCACATGCC
323 AGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGATGAAGAAAAATACGGCACCAACACATGCC
* * * *
17279639 CGAGCCCAGTATGTGCTGCCACAACCCTCAGTCTGGA-CCCATCTTAGACTGGGAATGAACTCTG
388 CGAGCCCAGCATGTGCTGCCACAACCCTCGGTC-CGATCCGATCTTAGACTGGGAATGAACTCTG
* * *
17279703 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCATGAAACGAGCGTAGCGGGCGC
452 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCAT-GCGGGCGC
* * * * *
17279768 TTATCCGGCCAGAGGGGCGGGATACGCAAGCCGGGGATC-AGTCGGGACCCCCTCTGCGTGCTAC
516 TCATCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CCGGGTCCCCCTCTGCGTGCTAT
* * * * * * *** * * *
17279832 CGACCCT-AT-TACCGTAACCCTTGGTTCGGTTTGATCATAGACTGGGAATGAACTCCGTATGCC
580 CGATCCTGCTGAAAC--AACCCTCGGTTTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCT
* * * * * * * *
17279895 TAAGCCAACAGATGAAACGAGGGGACGAGCAGGCGGGCACTACGTCGGCCAGAGAGACAGGATGC
643 TAA-CCAACCGACGAAAAGAGAGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * *
17279960 GTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATCCCAAT
707 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* *
17280025 GCAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTGCACGTGAAGTTTCATGGCA
772 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
17280090 AGACGACTCATTTTTTATTTTTCACGATTTTTAAAACTTTTTGCAGTT-CAGGATTTTTTTAAA
837 AGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCCA-GA-TTTTTTAAA
* * *
17280153 ATTTTTTCT-GAAGGAGTTTTGGCCCCAAACTTGGTACACGTGATCCTTGTAATTTTATTGGCAT
1 ATTTTTT-TGGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* *
17280217 GCACAAAAAAATTCAGCTGAAAAA-TCAAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
64 GCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
17280281 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCTTTTAAGG
128 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCTTTTAAGG
*
17280346 GGGTGTGAGTTCTCGAGGTTTGATTAGGGATAAGGGGCCAAAAATAAGGGCCAAGTACTAGCACC
193 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCC-AAAATAAGGGCCAAGTACTAGCACC
* * * *
17280411 CATCGCACATCATGTGCACACACCCCCCCTCGGCCCCCCGGTCGTCGAAACACCAATGCCGCCGG
257 CATCGCACATCATGTGCGCACA-CCCCCCTCGGCCCCCCGATCGACGAAACCCCAATGCCGCCGG
* * * * **
17280476 TTAGGTTCTCCGACGTTGCTCCGGCGATGGTGCCTCGATGGAGAAAAACGCGGCACCAACACATG
321 TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGATGAAGAAAAATACGGCACCAACACATG
* * * * *
17280541 CCTGAGCCCAACATGTTCTACCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCT
386 CCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCT
* * * *
17280606 GTATGCTTAGACTGGGAATGAATTCCGTATGCCTAAGTTAACCCACAAAACGAGCATGCAGGCGC
451 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGC
* * * *
17280671 TCATCCGGCCAGAGGGGCGGGATGCGCAAGCCCGGGATCAACCGGGTCCCCCTCTGCATGCTGTC
516 TCATCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTATC
* ** *
17280736 AATCCTGCTGAAACAACATTTGGTTTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTTGA
581 GATCCTGCTGAAACAACCCTCGGTTTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTT-A
* * * *
17280801 ACCAACCGACGAAAAGAGAGAACGGGTGGGCAGGCACTATGCCGGCCAGAGAGACGGGATGCGCA
645 ACCAACCGACGAAAAGAGAGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
17280866 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAAGCCCATCTTTATATTTCTACATGCCAATGCC
710 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * *
17280931 A-TTTTATGGCTTGTAAATTCATACAATTGTCCCTTTAAGCCCTTCACATGAAGCTTCATGGCAG
775 ATTTTTATGGCTTGTAAATTCATACAATGGTCCC-TTAAG-CCTTCACGTGAAGTTTCATGGCAA
*
17280995 GACGACTCATTTTCTATTTTTTACGATTTTTGAAACTTTTTACAGTTCCAGATTTTTTAAA
838 GACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCCAGATTTTTTAAA
* * * *
17281056 ATTTTTTTGGAAGGATTTTTGGCTCCAAACATGGTAGACGTGATCTTTGTATTTTTTTTGGCATG
1 ATTTTTTTGGAAGGAGTTTTGGC-CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
*
17281121 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCC
65 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
17281186 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGG
130 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCTTTTAAGGGG
* * *
17281251 GTGTGAGTTTTCGAGGTTTGATGAGGGAT-AGGAGGCCAATATAGGGGCCAAG---T---A-CCA
195 GTGTGAGTTCTCGAGGTTTGATGAGGGATAAGG-GGCCAAAATAAGGGCCAAGTACTAGCACCCA
* *
17281308 --GCACA-CA--T---CA-A-CCCCC-CGGCCCCCCGATC-ACTGAAACCCCAATGCCGTCGGTT
259 TCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCGATCGAC-GAAACCCCAATGCCGCCGGTC
* * * *** *
17281361 AGGTTCTCCGACGATGGTCCAACGATGGTGCCTGGGCAAAGAAAAATACGGCACCAGCACATGCC
323 AGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGATGAAGAAAAATACGGCACCAACACATGCC
* *
17281426 CGAGCCCAGCATGTGCTGCCGCAACCCT---T--G----G----T---CT--G---G---TCT-A
388 CGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGT
* *
17281466 AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGATGAAACGAGCATGCGGGCGCTC
453 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTC
** * * * * * ** *
17281530 ATCTAGCCAGAGGGGTGGGATGCGTAAACCGGAGACCGGTCGGGTCCCCCTCTGTGTGCTATCGA
518 ATCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTATCGA
** *** * * * *
17281595 TCCTATTGCTGCAACCCTCAGTTTGGTCCAATCTTAGACTAGGAATGAACTTCGTATGCGTAAGT
583 TCCTGCTGAAACAACCCTCGGTTTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAA-C
* * * *
17281660 CAACCGAC-AAAATGAGCGGACGGGC-GGTGGGCACTACGCCAGCCAGAGAGACGGGATGCACAA
647 CAACCGACGAAAA-GAGAGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
17281723 GCCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCATTGCCA
711 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
17281788 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
776 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
17281853 GACTCATTTTGTATTTTTCATGATTTTTGAAACTTTTTACGGTT-CAGGATTTTTTAAA
841 GACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCCA-GATTTTTTAAA
* * * * *
17281911 CTTTTTTCGGAAGGAGTTTTGACCTCAAACTTGGTAGACGTGATCCTTGTATTTTTGGTGCCATG
1 ATTTTTTTGGAAGGAGTTTTGGCC-CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* *
17281976 CACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCC
65 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
17282041 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCTTTTAAGGGG
130 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCTTTTAAGGGG
* * *
17282106 GTGTGAGTTCTCGAGGTTGGATGAGGGATAGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCAT
195 GTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAAAATAAGGGCCAAGTACTAGCACCCAT
* * **
17282171 CGCACATCATGTGCGCACACCCCCCCTCGGCCCCCCGCTCGTC-AGAACCCCAATATCGCCGGTC
260 CGCACATCATGTGCGCACA-CCCCCCTCGGCCCCCCGATCGACGA-AACCCCAATGCCGCCGGTC
* ** *
17282235 AGGCTTCT-CGACGTTGCTCCGGTGATGGTGCCTCGATGAAGAAAAATGCGGCACCAACACATGC
323 AGG-TTCTCCGACGATGCTCCGACGATGGTGCCTCGATGAAGAAAAATACGGCACCAACACATGC
* * *
17282299 CTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCTG
387 CCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTG
* * *
17282364 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATACGGGCGTT
452 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCT
* * * *
17282429 CATCAGGCCAGAGGGGCGGGATGCGCAAGCAGGGGATCGACCGGGTCCCCCTCTGCGTGTTGTCG
517 CATCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTATCG
** * *
17282494 ATCCTGCTGTCACAACCCTTGGGTTCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTTGA
582 ATCCTGCTGAAACAACCC-TCGGTTTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTT-A
* * * * * * *
17282559 GCCAACCGACGAAAAGAGTGGGCAGGTGGGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCA
645 ACCAACCGACGAAAAGAGAGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
17282624 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCCCATCTTTATATTTCTGCTTGCCAATGCC
710 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
** * * *
17282689 ATTTTTATGGCTTGTAAATTCATACAATTATCCCTTAAGTCTTCACATGAAGTTTCATGGCAGGA
775 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
17282754 CGACTCGTTTTCTATTTTTTACGATTTTTGAAACTTTTTATAGTTCAAGATTTTTTAAA
840 CGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCCAGATTTTTTAAA
* * * *
17282813 ATTTTTTCGGAAGGAGTTTTGGCTCCAAACTTAGTAGACGTGATCTTTGTATTTTTTTTGGCATG
1 ATTTTTTTGGAAGGAGTTTTGGC-CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
17282878 CAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
65 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
17282942 CCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG-CTCTTAAGGGG
130 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCTTTTAAGGGG
* * * *
17283006 GTGTGAGTTTTCGAGGTTTGATGAGGGAT-AGGAGGCCAAAATAGGGGCCAAGTACTACCACACA
195 GTGTGAGTTCTCGAGGTTTGATGAGGGATAAGG-GGCCAAAATAAGGGCCAAGTACTAGCACCCA
** * * *
17283070 TCGCACATCATGTGCGCACACCCCCC-CAACCCCCCGATC-ACTAGAACCCTAATGCCGTCGGTC
259 TCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCGATCGACGA-AACCCCAATGCCGCCGGTC
* *
17283133 AGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACT-AAGAAAAATACGGACACCAACACATG
323 AGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGA-TGAAGAAAAATACGG-CACCAACACATG
* * * *
17283197 CCCGAGCCCA-CATTTGCCTGCCGCAACCCCTTGGTCCGGTCCGATCTTAGACTGGGAATG-ACT
386 CCCGAGCCCAGCATGTG-CTGCCACAA-CCCTCGGTCCGATCCGATCTTAGACTGGGAATGAAC-
* * * * * *
17283260 TCCGTATGCCTAGA-TTGGAA--AAC-CCCTA---C--A--C-ACCCACAAAACGAGAATGCGGG
448 TCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGG
* ** * * * * * * *
17283313 CACTCATCTAGCCAGAGGGGTGGGATGCGTAAACTGGGGACCGACTGGGTCCCCCTCTGTGTGCT
513 CGCTCATCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCT
** * ** * **
17283378 ATCGATCCTGCT-ACTGCAACCCTCAGTTTGGTCTGATCTTAGACTGGGAATGAACTTTGTATGC
578 ATCGATCCTGCTGA-AACAACCCTCGGTTTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGC
** * * * * * *
17283442 GTTAGTCAACCGATGAAACGAGCGGACGGACGGGCGGGCGGGCACCACGCCAGCCAAAGAGACAG
642 -TTAACCAACCGACGAAA--AG-AGA-GGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
* *
17283507 GATGTGCAAGCCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAATATTTCTGCAT
702 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC-ATATTTCTGCAT
17283572 G-CAATGCCA-TTTTATGGCTTGTAAA-TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
766 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * *
17283634 ATGGCAAGACGACTCA-TTTCTGTTTTTCACGATTTTTGAAAC-TTTTACGGTTCAAGATTTTTT
831 ATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCCAGATTTTTT
17283697 AAA
896 AAA
*
17283700 ACTTTGTTTTCGGAACGGAGTTTTTGACCCTAAAC-TGGTAGAACAGTGAATTCCACTTGTATTT
1 A-TTT-TTTT-GGAA-GGAG-TTTTGGCCC-AAACTTGGTAG-AC-GTG-A-T-C-CTTGTATTT
*
17283764 TTGTTGGCATGCAAAAAAAAAATTCAGCTAA
54 TTGTTGGCATGC-ACAAAAAAATTCAGCTAA
17283795 NNNNNNNNNN
Statistics
Matches: 3131, Mismatches: 400, Indels: 223
0.83 0.11 0.06
Matches are distributed among these distances:
854 3 0.00
855 299 0.10
856 105 0.03
857 204 0.07
858 2 0.00
859 3 0.00
861 1 0.00
862 4 0.00
864 5 0.00
865 3 0.00
867 3 0.00
870 3 0.00
871 1 0.00
873 6 0.00
874 103 0.03
875 5 0.00
877 1 0.00
878 1 0.00
880 1 0.00
882 1 0.00
883 108 0.03
884 5 0.00
886 1 0.00
887 73 0.02
888 117 0.04
889 53 0.02
890 24 0.01
891 97 0.03
892 27 0.01
893 9 0.00
894 1 0.00
895 5 0.00
896 6 0.00
897 27 0.01
898 76 0.02
899 253 0.08
900 303 0.10
901 167 0.05
902 326 0.10
903 440 0.14
904 255 0.08
905 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
ATTTTTTTGGAAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCTTTTAAGGGGG
TGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAAAATAAGGGCCAAGTACTAGCACCCATC
GCACATCATGTGCGCACACCCCCCTCGGCCCCCCGATCGACGAAACCCCAATGCCGCCGGTCAGG
TTCTCCGACGATGCTCCGACGATGGTGCCTCGATGAAGAAAAATACGGCACCAACACATGCCCGA
GCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATG
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCATC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTATCGATCC
TGCTGAAACAACCCTCGGTTTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAACCAAC
CGACGAAAAGAGAGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
ATTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCCAGATTTTTTAAA
Found at i:17282371 original size:26 final size:26
Alignment explanation
Indices: 17282342--17282394 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17282332 CCAATCTGAT
*
17282342 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17282368 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17282394 C
1 C
17282395 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17286388 original size:26 final size:26
Alignment explanation
Indices: 17286352--17286404 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17286342 GTTGACTTAG
*
17286352 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
17286378 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
17286404 G
1 G
17286405 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:17287284 original size:26 final size:26
Alignment explanation
Indices: 17287248--17287300 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17287238 GTTGACTTAG
17287248 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17287274 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17287300 G
1 G
17287301 ATCGGACAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17288185 original size:26 final size:26
Alignment explanation
Indices: 17288149--17288201 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17288139 GTTGACTTAG
17288149 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
17288175 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17288201 G
1 G
17288202 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17288590 original size:892 final size:896
Alignment explanation
Indices: 17285661--17289066 Score: 4643
Period size: 892 Copynumber: 3.8 Consensus size: 896
17285651 CCGGGGGTGT
* * *
17285661 TGTCCGCACATGATGTGTGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCTCCTATCCCTCATC
1 TGTCTGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
17285726 AAACCTCGAGAACTCACACCCCCTT----A-CATTTGAGATTTTACAGGTTTGCTGCCAATAGCC
66 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
** * * *
17285786 ATTAAAGTGTCTGAAATGAAGACACTTTTTTCAAATGGTAACAAAATCTTGTACGCTTTGAGTTT
131 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * * * *
17285851 TTAGCTGAATATTTTTGTGGAT-CCAACAAAAATAAAAAGATCACATCT-CTCGAGTTTGGGGCC
196 TTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATATCTAC-CAAGTTTGGGGCC
* *
17285914 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTTAAAAATCATGAAAAA
260 AAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAA
* *
17285979 TAAAAAACGAGTCATCTTGCCATTAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
325 TAGAAAACGAGTCGTCTTGCCATTAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
17286044 ACAAGCCATAAAAATTGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
390 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * * *
17286109 TATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCC-G-GT-GTAGT-ACCCGCCCGTCGGTCG
455 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGGTCGCCCGCCCGCCCGCCC
* * *
17286170 GCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGGCCAGATTGA
520 GCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTAA
* * * * ** * *
17286235 GGATTGTGGCAGCAAGATCGGTAGCACGTAAAGGGGGACCCGGCCGATCCCTGACTTGTGCATCC
585 GGATTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCAACCGATCCCAG-CTTGCGCATCC
* *
17286300 CACCCTTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
649 CACCCCTCTAGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
* *
17286365 ATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGGGGGTTGC-AG
714 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA-
* *
17286429 CAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCG-CTGGAGCACCATCGCCG
778 CAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCG
* * * *
17286493 AAACATCACCGAAGAACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGCAGGCGG
842 GAGCATCACCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATC-GGGG--GGC-G
* * * * ** * *
17286552 GGTGTGCATATTGATAT-CAAT-GG-ACTAG-ATCTTGGCCCTTATATTGGCCCCCTATCCCTCA
1 TGTCTGCACA-TGATGTGTGATGGGTGCTGGTA-CTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * * *
17286613 TTTAAACCTTGAGAACTCACA--CCCTTTAAGAGCATTTAAGA-TTTACAGGTTTGCTG-CAGTA
64 -TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
17286674 GCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
128 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * *
17286739 TTTTTAGCTTAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAGATCTACCAGGTTTGGGG
193 TTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATATCTACCAAGTTTGGGG
* * **
17286804 CTAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTTGAAAATCATGAAA
258 CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAA
* *
17286869 AATAGAAAATGAGTCGTCTTGCCATTAAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAAT
323 AATAGAAAACGAGTCGTCTTGCCATTAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
17286934 TTACAAGCCATAAATATCGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
388 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
17286999 CCTATCGATCCACGACTTGTGCATCCCGTCTCTCTAGCCGGCGTAGTGGTCGCCCGCCCGCCCGC
453 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGGTCGCCCGCCCGCCCGC
* * * * * *
17287064 CGGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGATTGGGCCAGATT
518 CCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACT
* * *
17287129 GAA-GATTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCAGCCGATCCCTGGCTTGCGCA
583 -AAGGATTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCAACCGATCCC-AGCTTGCGCA
*
17287193 TCCCACCCCTCTAGCCGGTTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAG
646 TCCCACCCCTCTAGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAG
* *
17287258 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGC
711 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC
* * * *
17287323 GACTGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTAGTCGGGGCACCATCGCT
776 GACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC
* *
17287388 GGGGCATCACCGGAGAACCTGATCGAG-GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
841 GGAGCATCACCGGAGAACCTGACCG-GTGGCATTGGGGTTCCGACGATC-GGGGGG-C-----G
* *
17287451 TGTGC-GCACATGATGTATGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
1 TGT-CTGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * *
17287515 CAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTATAGGTTTGCTGCCAGTAGC
65 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
17287580 AATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTT
130 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* *
17287645 TTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATGCAAGGATCATATCTACCAAGTTTGGGGCC
195 TTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATATCTACCAAGTTTGGGGCC
* * * * * *
17287710 AAAACTCCTTCTAAAAAAATTTCAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
260 AAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAA
* * * * *
17287775 TAGAAAATGAGTCGTCTTACCA-TGAAACTTCAGGAGAAGGCTTAAGGGACCATTGTATGAATTT
325 TAGAAAACGAGTCGTCTTGCCATTAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
17287839 ACAAGCCATAAAAATGGCATTGGCACT-CAGAAATATGAAGATGT-CCTTAAACCCACCTACCAC
390 ACAAGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAAGATGTGCC-TAAACCCACCTACCAC
* *
17287902 CCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGGTTGCCCGCCCGCCCG-
453 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGGTCGCCCGCCCGCCCGC
* * ** *
17287966 CCGTTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
518 CCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACT
* ** * * **
17288031 AAGGGTTACGACAGCAGGATCGGCAGCACACAGAGGGGGACCCAACCGATCCTCAGCTTG-ATAT
583 AAGGATTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCAACCGATCC-CAGCTTGCGCAT
* * * **
17288095 CCCACCCCTCTGGCCGGTTGAGCACCCGCACCCTTGTTTCGTGGGTTGACTTAGGCATACGGAGT
647 CCCACCCCTCTAGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
* * *
17288160 TCATTCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCG
712 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCG
* *
17288225 ACAGCACATGCTGGGCTCGGGCATGTTTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCG
777 ACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCG
* * * *
17288290 GAGCATCACCGGAGAACTTGACCGGTGGCATTAGGGTTCCAACGATC-AGGGGC-
842 GAGCATCACCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGCG
17288343 TGTCTGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
1 TGTCTGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
** * * * *
17288408 AGGCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTACTACTAGTAGCC
66 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
17288473 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTT
131 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * *
17288538 TTAGCTAAATTTTTTTATGCATGCCACCAAAATTACAAGGATCATGTCTACCAAGTTTAGGGCCA
196 TTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATATCTACCAAGTTTGGGGCCA
* * *
17288603 AAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
261 AAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAAT
* *
17288668 AGAAAACGAGTCGTCTTGCCA-TGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
326 AGAAAACGAGTCGTCTTGCCATTAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
17288732 CAAGCCATAAAAATGGCATTGGCA--CAAAAAATATGAAGATGTGCCTTAACCCACCTACCACCC
391 CAAGCCATAAAAATGGCATTGGCATGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * ** *
17288795 TTTTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAATGCCCGCCCG-CCGCCTGCCC
455 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGGTCGCCCGCCCGCCCGCCC
* * * *
17288859 GCTCATTTCGTCGGTTGGCTTAGGCATACGGAGCTCATTCCCAGTCTAAGATGGGACAAGACTGA
520 GCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTAA
* * *
17288924 GGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCC
585 GGATTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCAACCGAT-CCCAGCTTGCGCATCC
* * * * * * * *
17288989 CGCCGCTCTAGTCGGCTGAGCGCTCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTC
649 CACCCCTCTAGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
17289054 ATT-CCAGTCTAAG
714 ATTCCCAGTCTAAG
17289067 ATCGGACCAG
Statistics
Matches: 2240, Mismatches: 231, Indels: 88
0.88 0.09 0.03
Matches are distributed among these distances:
888 5 0.00
889 33 0.01
890 27 0.01
891 290 0.13
892 723 0.32
893 10 0.00
894 4 0.00
895 5 0.00
896 349 0.16
897 4 0.00
898 6 0.00
899 14 0.01
900 20 0.01
901 257 0.11
902 121 0.05
903 168 0.08
904 204 0.09
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (896 bp):
TGTCTGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATATCTACCAAGTTTGGGGCCA
AAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAAT
AGAAAACGAGTCGTCTTGCCATTAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGGTCGCCCGCCCGCCCGCCCG
CTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTAAG
GATTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCAACCGATCCCAGCTTGCGCATCCCA
CCCCTCTAGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAG
CACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGC
ATCACCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGCG
Found at i:17289147 original size:159 final size:159
Alignment explanation
Indices: 17288858--17289226 Score: 443
Period size: 159 Copynumber: 2.3 Consensus size: 159
17288848 GCCGCCTGCC
* * * * *
17288858 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGCTCATTCCCAGTCTAAGATGGGACAAGACTG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAAGACTG
** * * * * * *
17288923 AGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATC
66 AGGGTTACGACAACAGGATCGGCAACACACAGAGGGGGACACGACCGATCCCCAGCTTGCGCATC
* * * * *
17288988 CCGCCGCTCTAGTCGGCTGAGCGCTCACA
131 CCGCCCCTCTAGCCGACTGAGCACCCACA
* *
17289017 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT-CCAGTCTAAGATCGGACCAGGACT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAAGACT
* * * * * *
17289081 GAGGGTTACGACAACAGGATTGGCAACACACAGAGGGGGACAGGACCGTTGCCCGGCTTGTGCAT
65 GAGGGTTACGACAACAGGATCGGCAACACACAGAGGGGGACACGACCGATCCCCAGCTTGCGCAT
* * *
17289146 CCCGCCCCTCTGGCCGATTGAGCACCCGCA
130 CCCGCCCCTCTAGCCGACTGAGCACCCACA
* *
17289176 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
17289227 CATACGGAGT
Statistics
Matches: 176, Mismatches: 32, Indels: 3
0.83 0.15 0.01
Matches are distributed among these distances:
158 15 0.09
159 152 0.86
160 9 0.05
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (159 bp):
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAAGACTG
AGGGTTACGACAACAGGATCGGCAACACACAGAGGGGGACACGACCGATCCCCAGCTTGCGCATC
CCGCCCCTCTAGCCGACTGAGCACCCACA
Found at i:17289230 original size:26 final size:26
Alignment explanation
Indices: 17289200--17289252 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17289190 GTTGACTTAG
17289200 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
17289226 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17289252 G
1 G
17289253 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17290676 original size:26 final size:26
Alignment explanation
Indices: 17290640--17290692 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17290630 TTTGACTTAG
*
17290640 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17290666 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17290692 G
1 G
17290693 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17292297 original size:26 final size:26
Alignment explanation
Indices: 17292267--17292319 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17292257 GTTGACTTAG
*
17292267 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17292293 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17292319 G
1 G
17292320 ATTAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17294546 original size:872 final size:869
Alignment explanation
Indices: 17291582--17296395 Score: 5739
Period size: 902 Copynumber: 5.4 Consensus size: 869
17291572 TTAGGCATAC
* * * *
17291582 GGTGTGTGCACATGATGGGTGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCA
1 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
17291647 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAC
66 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
17291712 CCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACATAATCTTGTACACTTCTAGT
131 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
17291777 TTTTAGCTGAAGTTTTTTGTGCATGCCAACACAAATGCAAGGATCACGTCTACCAAGTTTGAGGC
196 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG-GGC
* * * * *
17291842 CAAAACTCCTTCCGAAAAAATTTGAAAAAATCTCGAACCATAAAAAGTTTGAAAAATCATGAAAA
260 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
*
17291907 ATAGAAACCGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
325 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
17291972 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACC
390 ACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
*
17292037 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-G--C--CCGCCC
455 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CGACGTAGTGCACGCCTGCCCGTCCGCCC
* * * *
17292094 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGCGTTCATTCCTAGTCTAAGATCGGACCGGACTGA
519 GCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGA
* * * * * *
17292159 GGG--C--TA-T-GG--CAGCAGCATGTAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCC
584 GGGTTCGGTACTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCC
* * * *
17292216 GCCCCTCTGGTCGGCTGAGCGCCCGCACGC-TCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
649 GCCCCTCTGGCCGGATGAGCGCCCGTACGCTTCG-TGCA----TTGACTTAGGCATACGGAGTTC
*
17292280 ATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGACTGATGGTTACGGC
709 ATTCCCAGTCTAAG-AT-C--AG---A----C---C--------G----GACTGAGGGTTACGGC
**
17292345 AGCACATGCTGGTTTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGA
748 AGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGA
** * * * * *
17292410 GCATCGTCAGAGAACCTGACTAGTGGCATTGGGGTTCCGGC-AT-------CCGGGG
813 GCATCACCGGAGAACCTGACTGGCGGCATTGAGGTTCCGACGATCGGGGGGCCGGGG
* * *
17292459 GGTGTGCGCAGATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCA
1 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
17292524 TCAAAACTCGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGTTGCCAGTAG
66 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
17292589 GCATTAAAGTGTCTGAAATGGGTACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAAT
131 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
*
17292654 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT-CAAGGATCACATCTACCAAGTTTGGGGC
196 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGC
* * * *
17292718 CAATACTCCTTCCGAAAAAATTTCAAAAAATCTCGAACCTTAAAAAGTTTCAAAAATCGTGAAAA
260 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
* * * *
17292783 ATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTTTGAAATT
325 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
17292848 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
390 ACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * **
17292913 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCAGTTCGTCCGCCC
455 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CGACGTAGTGCACGCCTGCCCGTCCGCCC
* * **
17292978 GCTCATTTCGTCGGTTGGCTTAGGCAT-TGGAGTTCATTCCCAGCCTAAGATTGGACCAGG-CTG
519 GCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GGACTG
* * * * * * * *
17293041 AGGGTTGTGGCAGC-AGGATCAGCAGCACGCAGAGGGGGACCTGGCTGATCCTCGGCTGGTGCAT
583 AGGGTT-CGGTA-CTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCAT
* * * ** *
17293105 CCCACCCCTCTGGCCGGTTGAGCGCCCGGACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGT
646 CCCGCCCCTCTGGCCGGATGAGCGCCCGTACG--C--TTCGTGCATTGACTTAGGCATACGGAGT
* * ** ** *
17293170 TCATTCCTAGTCTATGATTGGATAGGACCGAGGGTTACGGCAGCACATGCTGGGCTC-GAGCATG
707 TCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCAG-GCATG
* * *
17293234 TGCTGGTGCCGCATTTTTCTTCGTAGGGGCACCATCGCTGGAGCATCACCGGAGAACCTGA-TCG
771 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACT-G
* *
17293298 GCAGCATTGGGGTTCCGACGATCGGGGGGCCGGGG
835 GCGGCATTGAGGTTCCGACGATCGGGGGGCCGGGG
*
17293333 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCTTATCCCTCA
1 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * * *
17293397 TCAAACCTTGAAAACTCACACCCCCTGAAAGAGCATTGGAGATTTTACAGG-TTGCTGCCAGTAG
66 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
17293461 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGT
131 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
17293526 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAGTTTGGGGC
196 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGC
* **
17293591 CAAAACTGCATT-CGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGCTTT-AAAAATCGTGAA
260 CAAAACT-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG-TTTCAAAAATCGTGAA
* * *
17293654 AAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGCCCATTGTATGAAT
323 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
17293719 TTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
388 TTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * *
17293784 CCTATCAATCCACGGCTTGCGCATCCCATCTCTCTGGTCGACATAGCGCACGCCTGCTCGTCCGC
453 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CGACGTAGTGCACGCCTGCCCGTCCGC
* * *
17293849 CCGTTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACT
517 CCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT
* * * * * *
17293914 GAGGGTTACGGTACTAGGATCGGTAGCATGCAGAGGGTGACCAGACCGATCGTCGGCTGGCGCAT
582 GAGGGTT-CGGTACTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCAT
* *
17293979 CCCGTCCCTCTGGCCGGATGAACGCCCGTACGCTT-GTGCATTGACTTAGGCATACGGAGTTCAT
646 CCCGCCCCTCTGGCCGGATGAGCGCCCGTACGCTTCGTGCATTGACTTAGGCATACGGAGTTCAT
* * * *
17294043 TCCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGCAACATATGCTGGGCTCAGGCATGTGTTG
711 TCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTG
** **
17294108 GTGCTACATTTTTCTTCACCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACTGGCGGCA
776 GTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACTGGCGGCA
*
17294173 TTGAGGTTTCGACGATCGGGGGGCCGAGGG
841 TTGAGGTTCCGACGATCGGGGGGCCG-GGG
* * **
17294203 GTTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCACCCCCTATCCCTCA
1 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
17294268 TCAAACCTTGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAG
66 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
17294333 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
131 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * *
17294398 TTTTAGCTGAATGTTTTTATGCATGCCAACAAAAATACAAAGATCACGTCTACCAAGTTTGCGAC
196 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG-GGC
* *
17294463 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGATTCAAAAATCGTGAAAA
260 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
*
17294528 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTT
325 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * *
17294593 ACAAGCGATAAAAATGGCATTGGCATATAGAAATATGAAGATGTGCTTAAACCAACCTACCACCC
390 ACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
17294658 TATCGATCCATGGCTTACGCATCCCGTCTCTCTGGCCAGCGTAGTGC-C-CACTCGCCTG-CCTG
455 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCGA-CGTAGTGCACGC-CT-GCCCGTCC-G
* * *** *
17294720 CCCGCTCGTTTCGTCGGTTGGCTTAGGCAAATAAAGTTCATTCCCTA-TCTAAGATCAGACCAGA
516 CCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCGGA
* * * * * * * *
17294784 -TCGAAGGTTGGGCAGTAGGATCGACAGCACACAGAGGAGGG-CCCGGA-CGATCCTCAGCTTAC
580 CT-GAGGGTTCGGTACTAGGATCGGCAGCACGCAGAGG-GGGACCC-GACCGATCCTCGGCTTGC
* * * * *
17294846 ACATCCCGCCCCTTTGGCCGGCTGAGCGCCCGTACACTCATTTCGTTGGTTGACTTAGGAATACG
642 GCATCCCGCCCCTCTGGCCGGATGAGCGCCCGT--ACGC--TTC----G-TG-C------AT--T
* * *
17294911 GAGTTCATTCCCAGTCTAAGCATACCGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
689 GA---C-TT---AG-----GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGT
* * *
17294976 TACGACAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
742 TACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * * * * *
17295041 GCCAGAGTATCACCGAAGAACCTGACCGACGGCATTG-GAGTTCCGACGATCGGAGAGGCCGGGG
807 ACCGGAGCATCACCGGAGAACCTGACTGGCGGCATTGAG-GTTCCGACGATCGG-GGGGCCGGGG
* * *
17295105 GGTTTGTGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
1 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
17295170 TCAAACCTCGAGAACTCACACCCCCTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCCGTAG
66 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
17295235 CCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
131 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
17295300 TTTTTGCTGAATTTTTTTGTGCATGCCAGCAAAAATACAAGGATCACGTCTACCAAGTTTGGGCC
196 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCC
* * * *
17295365 AAAACTACTTTCGAAAAAATTTTAAAAAATCCCAAACTGTAAAAAGTTTCAAAAATCGTGAAAAA
261 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
17295430 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
326 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
17295495 CAAGCCATAAAAATGGCATT-GCAATGCAGAAATATGAAGATGTGCCGAAACCCACCTACCACCC
391 CAAGCCATAAAAATGGCATTGGC-ATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * * *
17295559 TATCGATCCACGGCTTACACATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCT
455 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CGACGTAGTGCACGCCTGCCCGTCCGCCC
* * *
17295624 GCTCATTTCGTCGGTTGCCTTAGGCATACGGAGTTCATTCCCAGTATAAGATCAGACCAGA-TCG
519 GCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-G
* * *** * * **
17295688 AGGGTTGCGATAGC-AGGATCGGCAGCACACAGAGAAAGACCCGACAGATCCCCTACTTGCGCAT
583 AGGGTT-CGGTA-CTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCAT
* * * * * **
17295752 CCCGACCCTCTGGCCAG-CGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
646 CCCGCCCCTCTGGCCGGATGAGCGCCCGTACG--C--TTCGTGCATTGACTTAGGCATACGGAGT
* *
17295816 TCATTCCCAGTCTAAGCATACGAAGTTCATTCCAAGTCTAAGATCAGACCAGAATGAGGGTTGCA
707 TCATTCCCAGTCTAAG-AT-C--AG---A---C----C---G----GA-C----TGAGGGTTACG
** * * ** * *
17295881 GCAGCACATAATGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGCCACCATCACCG
746 GCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCG
* * ** * *
17295946 GAGCATCGCCGGAGAACCTAACCAGCGGTATTGAGGTTCCGGCGATCGGGGGGGCCGGGG
811 GAGCATCACCGGAGAACCTGACTGGCGGCATTGAGGTTCCGACGATC-GGGGGGCCGGGG
*
17296006 GGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
1 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
17296071 TCAAACCTTGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
66 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
17296136 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAG
131 CCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
*
17296201 TTTTT-GCCTGAATTCTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
195 TTTTTAG-CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * *
17296265 TCAAAACTACTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAA
259 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
* ** * *
17296330 AATAGAAAACGAGTCATCTTGCCATGAAACTTTTCGTTAAGGCTTAAGGGACCACTGTATGAATT
324 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
17296395 T
389 T
17296396 TTTCAAATGG
Statistics
Matches: 3432, Mismatches: 373, Indels: 239
0.85 0.09 0.06
Matches are distributed among these distances:
865 2 0.00
866 104 0.03
867 2 0.00
869 157 0.05
870 56 0.02
871 135 0.04
872 521 0.15
873 345 0.10
874 165 0.05
875 28 0.01
876 256 0.07
877 212 0.06
878 1 0.00
879 3 0.00
880 4 0.00
881 2 0.00
882 3 0.00
883 34 0.01
884 35 0.01
885 2 0.00
887 2 0.00
888 4 0.00
889 2 0.00
890 4 0.00
891 2 0.00
892 101 0.03
893 1 0.00
894 3 0.00
896 5 0.00
897 7 0.00
899 2 0.00
900 3 0.00
901 563 0.16
902 659 0.19
903 7 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (869 bp):
GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCC
AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCGACGTAGTGCACGCCTGCCCGTCCGCCCGC
TCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGG
GTTCGGTACTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGC
CCCTCTGGCCGGATGAGCGCCCGTACGCTTCGTGCATTGACTTAGGCATACGGAGTTCATTCCCA
GTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCC
GCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACTGGCGGCATTGAG
GTTCCGACGATCGGGGGGCCGGGG
Found at i:17294942 original size:26 final size:26
Alignment explanation
Indices: 17294906--17294956 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17294896 TGACTTAGGA
*
17294906 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACCGAGTTCATTCCCAGTCTAAGC
17294932 ATACCGAGTTCATTCCCAGTCTAAG
1 ATACCGAGTTCATTCCCAGTCTAAG
17294957 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACCGAGTTCATTCCCAGTCTAAGC
Found at i:17295842 original size:26 final size:26
Alignment explanation
Indices: 17295805--17295857 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17295795 GTTGACTTAG
* *
17295805 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
17295831 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
17295857 G
1 G
17295858 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:17296622 original size:230 final size:229
Alignment explanation
Indices: 17296164--17296625 Score: 746
Period size: 230 Copynumber: 2.0 Consensus size: 229
17296154 TGGGGACACT
*
17296164 TTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTGCCTGAATTCTTTTGTGCATGCC
1 TTTTTTCAAATGGTCACAAAATCTTGTACAATACGAGTTTTTGCCTGAATTCTTTTGTGCATGCC
* *
17296229 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCAAAACTACTTTCGAAAAAATTTTAAAA
66 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTACTTCCGAAAAAATTTTAAAA
* * * *
17296294 AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
131 AATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCACCCTACCATGAAA
** *
17296359 CTTTTCGTTAAGGCTTAAGGGACCACTGTATGAA
196 CTTCACGTGAAGGCTTAAGGGACCACTGTATGAA
* * *
17296393 TTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTGGCTGAATTTTTTTGTGCATGCC
1 TTTTTTCAAATGGTCACAAAATCTTGTACAATACGAGTTTTTGCCTGAATTCTTTTGTGCATGCC
* *
17296458 AACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
66 AACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTACTTCCGAAAAAATTTTAAA
* *
17296523 AAATCCCGAACCACAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGCCCTACCATGAA
130 AAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCACCCTACCATGAA
17296588 ACTTCACGTGAAGGCTTAAGGGACCA-TCGTATGAA
195 ACTTCACGTGAAGGCTTAAGGGACCACT-GTATGAA
17296623 TTT
1 TTT
17296626 ACAAGCCATA
Statistics
Matches: 214, Mismatches: 17, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
229 94 0.44
230 120 0.56
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.29
Consensus pattern (229 bp):
TTTTTTCAAATGGTCACAAAATCTTGTACAATACGAGTTTTTGCCTGAATTCTTTTGTGCATGCC
AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTACTTCCGAAAAAATTTTAAAA
AATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCACCCTACCATGAAA
CTTCACGTGAAGGCTTAAGGGACCACTGTATGAA
Found at i:17297872 original size:26 final size:26
Alignment explanation
Indices: 17297835--17297887 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17297825 GTTGACTTAG
*
17297835 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17297861 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17297887 G
1 G
17297888 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17298194 original size:901 final size:900
Alignment explanation
Indices: 17296393--17301581 Score: 6217
Period size: 901 Copynumber: 5.8 Consensus size: 900
17296383 ACTGTATGAA
*
17296393 TTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTGGCTGAATTTTTTTGTGCATGCC
1 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCC
*
17296458 AACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
66 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * * *
17296523 AAATCCCGAACCACAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGCCCTACCATGAA
131 AAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
17296588 ACTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
196 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * *
17296653 TAGAAATAAGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACAGCTTGCACATCCCGT
261 CAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * *
17296718 CTTTCTGGCC-AGCATAGTG--C-CCA-CCTGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCA
326 CTCTCTGGCCGA-CGTAGTGCCCGCCAGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * *
17296778 AACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGGCAGTA
390 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCA
* * * * * *
17296843 CACAGAGGGGGACTCGGCTGATCCCTAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCTCG
455 CGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCG
* * * * * *
17296908 TACGCTCGTTTCATGGGTTGACATAGGCATACCGAGTTCATTCCCAGTC-AAGTATATGGAGTTC
520 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * *
17296972 ATTCACAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCAGGTGC
585 ATTCCCAGTCTAAGATCGGACCGGA-CGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGC
* * ** *
17297037 TGGTGCCATATTTTTCTTC-ACTGGGGCACCATCGTCGGAGCATTGCCGGAGAACCTGACTGACG
649 TGGTGCCGTATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACG
* * * * *
17297101 ACATTGGGGTTCCGACCATCGGGGGGCCGGGGGGGTATGCGCACATGATGTGTGATGGGTGCTGC
713 GCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* **
17297166 TACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCTCGAACTCACACCCCCTTAAAGA
777 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
17297231 GCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGGAAAGGGGACAC
842 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGACAC
*
17297291 TTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAA-TTTTTTGTGCATGCC
1 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCC
* * * * * *
17297355 AACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCGAAAGTCCTTTCGAAAAATTTTTTAA
66 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * * *
17297420 AAATCCCGAACCACAAAATGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGCCTTGCCATGAA
131 AAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
17297485 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
196 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
17297550 CAGAGATAAGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCATGGCTTGCGCATCCCGT
261 CAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
17297615 CTCTCTGGCCGGCGTAGTGCCCGCCAGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCAT
326 CTCTCTGGCCGACGTAGTGCCCGCCAGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* ** * * * *
17297680 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCAGCAGCAAGATCAGCAGCAC
391 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCAC
* * * * * * * *
17297745 GCAGAGGGGGACCAGATCGATCCCCGACTTGCGCATCCCACCCCTCTGACTGGCTGAGCGCCCGC
456 GCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGC
*
17297810 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
521 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* *
17297875 TTCCCAGTCTAAGATCGGACCGAATCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCT
586 TTCCCAGTCTAAGATCGGACCGGA-CGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * *
17297940 GGTGCTGCATTTTTCTTCGTAGGGGCACCATCGTCGGAG-AGTCACCGGAGAACTTGACCGACGG
650 GGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA-TCACCGGAGAACCTGACCGACGG
**
17298004 CATTGGGGTTCCGACGATCGACGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
714 CATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
17298069 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
779 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
** *
17298134 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTGTTAAAGTGTCTAAAATGGGAACAC
844 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG-ACAC
* *
17298192 TTTCTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGCC
1 TTTTTTCAAATGGTCACAAAATCTTGTACAC---------TT--C-G-A---GTTTTTG---G--
* *
17298257 AACAAAAATACAGGGATCATGTCATTTTTTTTTGCATGCCAACAAAAATACAGGGATCACGTCTA
45 --C-----T-----G---A----ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * *
17298322 CCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAGTCCTGAACCGCAAAAAGTTTCA
91 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCA
* * * * *
17298387 AAAATCATGAAAAATAAAAAATGAATCATCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACC
156 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
17298452 ATTGTATGAATTTACAAGCCTTAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
221 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAAGAAGATGTGCCTAAAC
* * ** *
17298517 CCACCTACCACCCTATCGATCCACGACTTACGCATCTTGCCTCTCTGGCCGACGTAGT-------
286 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* * * *
17298575 -GCCCGCCTGTCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAATAT
351 AGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
** * ** * * * * *
17298639 TGGACCAGACTGAGGGTTATGGTAGCAAGATCGGTAGCACACAGA-GGGGACCCGACTGATCCCA
416 CAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCT
* * * * * * *
17298703 GGCTTGCGCATCCCACCCTTTTGGCCGGCTGAGCGCCTGCACGCTTGTTTCATGGGTTGACTTAG
481 GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
17298768 GCATACGGAGTTCATTCCCAATATAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGAC
546 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * *
17298833 TGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTTGCCGGGG
611 -GAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
* * * *
17298898 CACCATCTTCAGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGAGGGGC
675 CACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGG
* * * *
17298963 CCGGGGGCTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTTGTCCCCTAT
739 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
** *
17299028 CCCTCATCAAATGTCGAGAACTCACA-CCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGC
804 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
17299092 CAGTAGCCATTAAAGTGTCTGAAATAAGGACAC
869 CAGTAGCCATTAAAGTGTCTGAAAT-GGGACAC
* * *
17299125 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAAG-TTTTAGCTGAATTATTTTGTGCATGC
1 TTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTGGCTGAATTTTTTTGTGCATGC
* * * * *
17299189 CAGCAAAAATACAAGGCTTATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
65 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * *
17299254 AAAATCTCG-ACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGA
130 AAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
17299318 AACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
195 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
17299383 GCTGAAATATA-AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCC
260 GCAGAAATA-AGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * *
17299447 GTCTCTCTGGTCGACGTAGTGCCCGCCTGTCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGAC
324 GTCTCTCTGGCCGACGTAGTGCCCGCCAGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * ** *
17299512 ATACGGAGTTCATTCCCAATCTAAGATCAAACCAGACCGAGCGTTATGATAGCAGGATCGGCAGC
389 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGC
* ** *
17299577 ACGCAGAGGGGGACCCTG-CCGATCCTTGGCTTATGCATCCCGCCCCTCTGGCCGACTGAGCACC
454 ACGCAGAGGGGGACCC-GACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCC
* * * *
17299641 CACACACTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGT
518 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * *
17299706 TCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCACATGTTGGGCTCGGGCATGT
583 TCATTCCCAGTCTAAGATCGGACCGGA-CGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGT
** * ** ** *
17299771 GCTGGTGATGCATTTTTCTTCG-CGGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGG
647 GCTGGTGCCGTATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGA
* *
17299835 CGGCATTGGGGTTCCGACGATCGGGGTGGCCAGGGGGTGTGCGCACATGATGTGCGATGGATGCT
711 CGGCATTGGGGTTCCGACGATCGGGG-GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * * *
17299900 GGTACTTGGCCTTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCAGACCTCCTTAAA
775 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * * *
17299965 AAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCAATTAAAGTGTTTGGAATGGGCACAC
840 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG-ACAC
* * * *
17300027 GTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATAC
1 -TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGC
* * * * * *
17300092 CAAAAAAAATACAATGATTACATCTATCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
65 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* *
17300157 AAAAT-CTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
130 AAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * *
17300221 AACATCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGTATTGGCAC
195 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
** * * * * *
17300286 ATAGAATTATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGTTTGCGCATCCCA
260 GCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * *
17300351 TCTCTCTGGCCGACGTAGTGCCCACCGGCCCGCCCGCCCGTTCGTTTCGTCGGTTGTCTTATGCG
325 TCTCTCTGGCCGACGTAGTGCCCGCCAGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
*** ** * * *
17300416 TACGGAGTTCATTCAGTGTCTAAGATTGGACTAGACCGAGGGTTACGGTAGCAGGATTGGCAGCA
390 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCA
* * * * **
17300481 TGCAGAGGGGGACCCGACCGATCCCTGGCTTGTGCATCCCGCCCCTCTAGTCGGTTGAGCGCCCG
455 CGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCG
* * *
17300546 CACGCTCGTTTCGTGGGTTCACTTAGGCAGACGGAGTTGATTCCCAGTCTAAG-AT-C-G-G---
520 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * *
17300604 A-T--C---C----A----A-C-G--GAGGGTTGCGGTAGCACATGCTAGGCTCGGGCATGTGCT
585 ATTCCCAGTCTAAGATCGGACCGGACGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * * * **
17300651 GGTGCCGTATTTTTCTTCATTGGGGCACCATAG-CCGAGCATCATCGGAGAACCTGACCGGTGGC
650 GGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGC
* * * * *
17300715 AATGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTACGGGTAC
715 ATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
17300780 TTGGCCCTTATATTGGCCCCCTATCCCTCATCCAACCTTGAGAACTCACACCCCCTTAAAGAGCA
780 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * *
17300845 TTTGAGATTTTACAGGTTTGTTGCCAGTAGCCACTAAAGTGTATGAAATAGGGACAC
845 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACAC
*
17300902 TTTTTTTCAAATGATCACAAAATCTTG------T--A--------C---A----------C--GC
1 -TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGC
* *
17300936 CAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATCCGAAAAAATTTTAA
65 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
** * *
17301000 AAAATCTTGAACCTCAAAAAGTTTCAAAAAT-AGTGAAAAATAAAAAACGAGTCGTCTTGCCATG
130 AAAATCCCGAACCACAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
17301064 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGCAAAATGGCATTGGC
194 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGC
* * * *
17301129 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCC
258 ATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * ** * ** *
17301194 CATCTCTCTGGTCGGCGTAGTGCCTGCCTGTTCGCTCGCCCGCTCGTTTCGTCGGTTCACCTAGG
323 CGTCTCTCTGGCCGACGTAGTGCCCGCCAGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * ** * * *
17301259 CATACGGGGATCATTCCCAATCTAAGATCAGACCAGATTGAGGGTTGCGGTAGTAGGATCGGTAA
388 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAG
* * **
17301324 CATGCAGAGGGGGACTCGACCGATCTTTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCC
453 CACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCC
*** * * * * * * *
17301389 CATTCGCTCGTTTCCTGGGTTCACTTAGGCATACAGAGTTCATTCCCATTCCAAGCATACCGAGA
518 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * * *
17301454 TCATTCTCAGTCTAAGATCGGACCGGATCAAGGGTTGCGACAGCACATGCTGGGCTCAGGCAAGT
583 TCATTCCCAGTCTAAGATCGGACCGGA-CGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGT
* * *
17301519 GCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCTCCAGAGAACCTGACCG
647 GCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCG
17301582 GGAATGAACT
Statistics
Matches: 3716, Mismatches: 468, Indels: 240
0.84 0.11 0.05
Matches are distributed among these distances:
843 59 0.02
844 104 0.03
845 276 0.07
846 3 0.00
847 1 0.00
848 1 0.00
849 1 0.00
852 1 0.00
853 1 0.00
855 1 0.00
856 1 0.00
858 1 0.00
859 1 0.00
862 1 0.00
866 1 0.00
867 2 0.00
868 1 0.00
869 1 0.00
871 63 0.02
872 22 0.01
875 168 0.05
876 51 0.01
877 60 0.02
880 1 0.00
881 1 0.00
882 1 0.00
886 1 0.00
890 1 0.00
892 186 0.05
893 79 0.02
895 1 0.00
896 1 0.00
897 274 0.07
898 47 0.01
899 2 0.00
900 106 0.03
901 677 0.18
902 214 0.06
903 494 0.13
905 1 0.00
910 3 0.00
912 1 0.00
913 1 0.00
914 2 0.00
917 10 0.00
920 1 0.00
921 1 0.00
922 1 0.00
924 3 0.00
929 1 0.00
932 1 0.00
933 333 0.09
934 185 0.05
937 1 0.00
941 1 0.00
942 263 0.07
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCC
AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
AAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
CAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGACGTAGTGCCCGCCAGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCAC
GCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
TTCCCAGTCTAAGATCGGACCGGACGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTG
GTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCA
TTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGACAC
Done.