Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 111 of 190
Found at i:17298295 original size:40 final size:40
Alignment explanation
Indices: 17298240--17298315 Score: 152
Period size: 40 Copynumber: 1.9 Consensus size: 40
17298230 TTTTAGCTGA
17298240 ATTTTTTTTTGCATGCCAACAAAAATACAGGGATCATGTC
1 ATTTTTTTTTGCATGCCAACAAAAATACAGGGATCATGTC
17298280 ATTTTTTTTTGCATGCCAACAAAAATACAGGGATCA
1 ATTTTTTTTTGCATGCCAACAAAAATACAGGGATCA
17298316 CGTCTACCAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (40 bp):
ATTTTTTTTTGCATGCCAACAAAAATACAGGGATCATGTC
Found at i:17299169 original size:933 final size:922
Alignment explanation
Indices: 17297371--17300933 Score: 4077
Period size: 903 Copynumber: 3.9 Consensus size: 922
17297361 AATACAAGGA
* ** * * * * *
17297371 TCACGTCTACCATGTTTGGGGCCGAAAGTCCTTTCGAAAAATTTTTTAAAAATCCCGAACCACAA
1 TCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAA-ATTTTAAAAATCCTGAACCGCAA
* * **
17297436 AATGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCT
65 AAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCT
* *
17297501 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAGATAAGAAGATG
130 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * *
17297566 TGCCTAAACCCACCTACCACCCTATTGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
195 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
17297631 GTGCCCGCCAGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCA
260 GT--------GCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCA
* ** * * * * *
17297696 GTCTAAGATCAGACCGGATTGAGGGTTGCAGCAGCAAGATCAGCAGCACGCAGAGGGGGACCAGA
317 GTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAAGATCGGCAGCACGCAGAGGGGGACCCGA
* * * * *
17297761 TCGATCCCCGACTTGCGCATCCCACCCCTCTGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
382 CCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
*
17297826 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
447 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * *
17297891 GGACCGAATCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CTGCATTTTTC
512 AGACCGACT-GAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC-GCATTTTTC
* * *
17297955 TTCGTAGGGGCACCATCGTCGGAG-AGTCACCGGAGAACTTGACCGACGGCATTGGGGTTCCGAC
575 TTCGCAGGGGCACCATCATCGGAGCA-TCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
*
17298019 GATCGACGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
639 GATCGAGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
17298083 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
704 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTAC
** * *
17298148 AGGTTTGCTGCCAGTAGCTGTTAAAGTGTCTAAAATGGGAACAC-TTTCTTCAAATGGTCACAAA
769 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACGTTTTTTCAAATGGTCACAAA
* *
17298212 ATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAGGGATCAT
834 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA-GGAT-AT
17298277 GTCATTTTTTTTTGCATGCCAACAAAAATAC
897 GTCATTTTTTTTTG--TGCC-AC--AAATAC
17298308 AGGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAGTCCTGAAC
1 -----TCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAA-TCCTGAAC
* * *
17298373 CGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAATCATCTTGGCATGAAACTTCACGTGA
60 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGA
*
17298438 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCATTGGCATGCAGAAATATGA
125 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* * ** *
17298503 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACGCATCTTGCCTCTCTGGCCG
190 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * *
17298568 ACGTAGTGCCCGCCTGTCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
255 ACGTAGTGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* ** * * * * *
17298633 TAATATTGGACCAGACTGAGGGTTATGGTAGCAAGATCGGTAGCACACAGA-GGGGACCCGACTG
320 TAAGATCAGACCAGACCGAGGGTTACGGTAGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCG
* * * * * *
17298697 ATCCCAGGCTTGCGCATCCCACCCTTTTGGCCGGCTGAGCGCCTGCACGCTTGTTTCATGGGTTG
385 ATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * *
17298762 ACTTAGGCATACGGAGTTCATTCCCAATATAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGA
450 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* *
17298827 CCGGACTGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTTG
515 CC-GACTGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCG
* * * *
17298892 CCGGGGCACCATCTTCAGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCG
579 CAGGGGCACCATCATCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG
* * * *
17298957 AGGGGCCCGGGGGCTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTTGTC
644 AGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
**
17299022 CCCTATCCCTCATCAAATGTCGAGAACTCACA-CCCCTTAAAGAACATTTGAGATTTTACAGGTT
709 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTT
*
17299086 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATAAGG-ACAC-TTTTTTCAAATGGTCACAAAATCT
774 TGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGAACACGTTTTTTCAAATGGTCACAAAATCT
* * *
17299149 TGTACACTTCAAAG-TTTTAGCTGAATTATTTTGTGCATGCCAGCAAAAATAC-----A----A-
838 TGTACACTTC-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGATATGTCAT
17299203 --------G-G---C---T--
902 TTTTTTTTGTGCCACAAATAC
* * * *
17299207 T-ATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT-CTCG-ACCACA
1 TCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTT-AAAAATCCT-GAACCGCA
* * *
17299269 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGC
64 AAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGC
* *
17299334 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCTGAAATATAAAGAT
129 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* *
17299399 GTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGTCGACGT
194 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * *
17299464 AGTGCCCGCCTGTCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGACATACGGAGTTCATTCCC
259 AGT----G-C---CCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * *
17299529 AATCTAAGATCAAACCAGACCGAGCGTTATGATAGCAGGATCGGCAGCACGCAGAGGGGGACCCT
316 AGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAAGATCGGCAGCACGCAGAGGGGGACCC-
* ** * * * * * *
17299594 G-CCGATCCTTGGCTTATGCATCCCGCCCCTCTGGCCGACTGAGCACCCACACACTCGTTTTGTG
380 GACCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
*
17299658 GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
445 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * *
17299723 TCAGATCGGACCGAGGGTTGTGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGAT-GCATTTT
510 TCAGA-CCGACTGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-TCGCATTTT
* * ** *
17299787 TCTTCGCGGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA
573 TCTTCGCAGGGGCACCATCATCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * * *
17299852 CGATCG-GGGTGGCCAGGGGGTGTGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCTTTAT
638 CGATCGAGGG-GCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * * *
17299916 ATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCAGACCTCCTTAAA-AAGCATTTGAGATTT
702 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAA-CATTTGAGATTT
* * * * * *
17299980 TACAGGTTTGCTGCTAGTAGCAATTAAAGTGTTTGGAATGGGCACACGTTTTTTCAAATGGTCAT
766 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACGTTTTTTCAAATGGTCAC
* * *
17300045 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATACCAAAAAAAATAC---A-A
831 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGATA
17300106 TG--A--------T-T---AC--AT-C
896 TGTCATTTTTTTTTGTGCCACAAATAC
* *
17300116 T-A----T--CAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT-CTGAACCGCAA
1 TCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTT-AAAAATCCTGAACCGCAA
* * *
17300173 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCT
65 AAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCT
* * *** * *
17300238 TAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGTATTGGCACATAGAATTATGAATATG
130 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* *
17300303 TGCCTAAACCCACCTACCACCCTATCGATCCACGGTTTGCGCATCCCATCTCTCTGGCCGACGTA
195 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
* * * * * ***
17300368 GTGCCCACCGGCCCGCCCGCCCGTTCGTTTCGTCGGTTGTCTTATGCGTACGGAGTTCATTCAGT
260 GTG--C-CC-GCCCGCCCG--C--TCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCA
** * * * *
17300433 GTCTAAGATTGGACTAGACCGAGGGTTACGGTAGCAGGATTGGCAGCATGCAGAGGGGGACCCGA
317 GTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAAGATCGGCAGCACGCAGAGGGGGACCCGA
* * * * *
17300498 CCGATCCCTGGCTTGTGCATCCCGCCCCTCTAGTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGG
382 CCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * *
17300563 TTCACTTAGGCAGACGGAGTTGATTCCCAGTCTAAG-AT-C-G-G---------A-TC------C
447 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
17300608 A-A-CG---GAGGGTTGCGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTT
512 AGACCGACTGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTT
*** * * * ** * *
17300668 CATTGGGGCACCAT-AGCCGAGCATCATCGGAGAACCTGACCGGTGGCAATGGGGTTCCGATGAT
577 CGCAGGGGCACCATCATCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* * * *
17300732 CG-GGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTACGGGTACTTGGCCCTTATATTGG
642 CGAGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * *
17300796 CCCCCTATCCCTCATCCAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
707 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGG
* * * * *
17300861 TTTGTTGCCAGTAGCCACTAAAGTGTATGAAATAGGG-ACACTTTTTTTCAAATGATCACAAAAT
772 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGAACACGTTTTTTCAAATGGTCACAAAAT
17300925 CTTGTACAC
836 CTTGTACAC
17300934 GCCAACAAAA
Statistics
Matches: 2305, Mismatches: 270, Indels: 159
0.84 0.10 0.06
Matches are distributed among these distances:
875 171 0.07
876 53 0.02
877 60 0.03
880 1 0.00
882 1 0.00
883 2 0.00
889 2 0.00
890 1 0.00
892 189 0.08
893 43 0.02
894 6 0.00
896 1 0.00
897 1 0.00
898 2 0.00
899 11 0.00
900 96 0.04
901 321 0.14
902 68 0.03
903 469 0.20
904 1 0.00
905 1 0.00
906 2 0.00
907 1 0.00
908 1 0.00
909 2 0.00
910 1 0.00
913 1 0.00
922 1 0.00
926 1 0.00
933 372 0.16
934 188 0.08
941 9 0.00
942 226 0.10
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (922 bp):
TCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAATCCTGAACCGCAAA
AAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
TGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
CAGACCAGACCGAGGGTTACGGTAGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCT
GGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACT
GAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCAGGGGC
ACCATCATCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGCC
CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGAACACGTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGATATGTCATTTTTTTTTG
TGCCACAAATAC
Found at i:17299706 original size:26 final size:26
Alignment explanation
Indices: 17299669--17299721 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17299659 GTTGACTTAG
17299669 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
17299695 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17299721 G
1 G
17299722 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17302518 original size:26 final size:26
Alignment explanation
Indices: 17302489--17302541 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17302479 CTGGTCCGAT
* *
17302489 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
17302515 CTTAGACGGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
17302541 C
1 C
17302542 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCGTATG
Found at i:17303975 original size:26 final size:26
Alignment explanation
Indices: 17303939--17303991 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17303929 CTGGTCTGAT
17303939 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
17303965 CTTAGAGTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17303991 C
1 C
17303992 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17305548 original size:84 final size:84
Alignment explanation
Indices: 17305444--17305613 Score: 286
Period size: 84 Copynumber: 2.0 Consensus size: 84
17305434 CTTTAATGGC
* * *
17305444 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGGGTTCTCTAGGTTTGAT
1 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
*
17305509 GAGGGATAGGGGGCCAATA
66 GAGGGATAGGGGACCAATA
* *
17305528 TACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTGAGTTCTCGAGGTTTGAT
1 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
17305593 GAGGGATAGGGGACCAATA
66 GAGGGATAGGGGACCAATA
17305612 TA
1 TA
17305614 AGGGCCATGT
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
84 80 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.28
Consensus pattern (84 bp):
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGACCAATA
Found at i:17305845 original size:26 final size:26
Alignment explanation
Indices: 17305807--17305859 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17305797 CCAGTCAGAT
* *
17305807 CTTAGAATGGGAATGAACTCTGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
*
17305833 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
17305859 C
1 C
17305860 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGAATAGGAATGAACTCCGTATG
Found at i:17307021 original size:164 final size:159
Alignment explanation
Indices: 17306725--17307098 Score: 541
Period size: 164 Copynumber: 2.3 Consensus size: 159
17306715 ACTCCGTATG
* * *
17306725 CTTAGACTGGGAATGAACTCCATTTGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGC
*
17306790 AGGCCAGAGAGGCGAGATGCGCAACCTGGGGATCGGCCTGGTCCCCCTCTACGTGCTATCAATCC
66 AGGCCAGAGAGGCGAGATGCGCAACCTGGGGATCGGCCGGGTCCCCCTCTACGTGCTATCAATCC
*
17306855 TGCTGCTGCAACCCTCAATCTGATCTGATCCGAT
131 TGCTACTGCAACCCTCAA--T--TC-GATCCGAT
*
17306889 CTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGC
* * * * * * * * *
17306954 CGGCCAGAGGGGCGAGATGCGCAAGCTGGGGATCGGTCGGGTCCCTCTCTGCGTGTTGTCGATCC
66 AGGCCAGAGAGGCGAGATGCGCAACCTGGGGATCGGCCGGGTCCCCCTCTACGTGCTATCAATCC
17307019 TGCTACTGCAACCCTCAATTCGATCCGAT
131 TGCTACTGCAACCCTCAATTCGATCCGAT
* **
17307048 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
17307099 GGCGGGCGGT
Statistics
Matches: 191, Mismatches: 19, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
159 55 0.29
160 2 0.01
162 1 0.01
164 133 0.70
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGC
AGGCCAGAGAGGCGAGATGCGCAACCTGGGGATCGGCCGGGTCCCCCTCTACGTGCTATCAATCC
TGCTACTGCAACCCTCAATTCGATCCGAT
Found at i:17309100 original size:585 final size:585
Alignment explanation
Indices: 17307934--17309667 Score: 3023
Period size: 585 Copynumber: 3.0 Consensus size: 585
17307924 ATCTGATCCA
* * *
17307934 ATCTTAGACTG-GAAATGAACTCCGTATGCCTAAGCCAACCAACGAAAC--G-A-GCGGACGGGC
1 ATCTTAGACTGAG-AATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCAGGCGGGCGGGC
* * * * * *
17307994 GGGTGGGCACTACGCCAGCCAG-CGAGACAGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGT
65 GGGCGGGCACTACGCCGGCCAGAC-ACACGGGATGCGCAAGCCGTGGATCGGTAGGGTGGTAGGT
* * *
17308058 GGGTTTAGGCACATCTTCATATTTCTACA-TGCCAATCCCATTTGTATTGCTTGTAAATTCATAC
129 GGGTTTAGGCACATCTTCATATTTCTA-AGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
17308122 AATGGTCCCTTCAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
193 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
17308187 TTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAAGGAGTTTTTTCCCCAAAC
258 TTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC-GAAAGGAGTTTTTTCCCCAAAC
17308252 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGT
322 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGT
17308317 GTACAAGATTGTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCA
387 GTACAAGATTGTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCA
17308382 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATA
452 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATA
*
17308447 GGGGGCCAATATAAGGGCCAACTACCAGCACCCATTGTACATCATGTGCGCACACCTCGGTCTAG
517 GGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGTACATCATGTGCGCACACCTCGGTCTAG
17308512 TCTG
582 TCTG
17308516 ATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCAGGCGGGCGGGCG
1 ATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCAGGCGGGCGGGCG
17308581 GGCGGGCACTACGCCGGCCAGACACACGGGATGCGCAAGCCGTGGATCGGTAGGGTGGTAGGTGG
66 GGCGGGCACTACGCCGGCCAGACACACGGGATGCGCAAGCCGTGGATCGGTAGGGTGGTAGGTGG
17308646 GTTTAGGCACATCTTCATATTTCTAAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
131 GTTTAGGCACATCTTCATATTTCTAAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * **
17308711 GGTCCCTTAAGCCTTTACGTGAAATTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTT
196 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * * **
17308776 TGAAACTTTTTACGGTTCAAGATTTTTTTAAATTTTTTCGAAATGAGTTTTGGCCCCAAACTTGG
261 TGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTTTCCCCAAACTTGG
* * * * * *
17308841 TAGACGTGATCCTTGTATTTTTTTTGGCATGTACAAAAAAATTCAGCTGAAAACTCGAACTGCAC
326 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTAC
* * * * *
17308906 AAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAAACACTTTAATGGCTACTAGCAGCAA
391 AAGATTGTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
*
17308971 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGGTAGGGG
456 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGG
17309036 GCCAATATAAGGGCCAACTACCAGCACCCATCGTACATCATGTGCGCACACCTCGGTCTAGTCTG
521 GCCAATATAAGGGCCAACTACCAGCACCCATCGTACATCATGTGCGCACACCTCGGTCTAGTCTG
17309101 ATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCAGGCGGGCGGGCG
1 ATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCAGGCGGGCGGGCG
17309166 GGCGGGCACTACGCCGGCCAGACACACGGGATGCGCAAGCCGTGGATCGGTAGGGTGGTAGGTGG
66 GGCGGGCACTACGCCGGCCAGACACACGGGATGCGCAAGCCGTGGATCGGTAGGGTGGTAGGTGG
17309231 GTTTAGGCACATCTTCATATTTCTAAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
131 GTTTAGGCACATCTTCATATTTCTAAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
17309296 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
196 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
*
17309361 TGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTTCCCCAAACTTGG
261 TGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTTTCCCCAAACTTGG
17309426 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTAC
326 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTAC
17309491 AAGATTGTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
391 AAGATTGTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
*
17309556 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
456 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGG
** *
17309621 GCCAATATAAGTTCCAAGTACCAGCACCCATCGTACATCATGTGCGC
521 GCCAATATAAGGGCCAACTACCAGCACCCATCGTACATCATGTGCGC
17309668 GCATCCCCCC
Statistics
Matches: 1084, Mismatches: 61, Indels: 11
0.94 0.05 0.01
Matches are distributed among these distances:
582 44 0.04
583 1 0.00
584 1 0.00
585 813 0.75
586 224 0.21
587 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (585 bp):
ATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCAGGCGGGCGGGCG
GGCGGGCACTACGCCGGCCAGACACACGGGATGCGCAAGCCGTGGATCGGTAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTAAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
TGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTTTCCCCAAACTTGG
TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTAC
AAGATTGTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAACTACCAGCACCCATCGTACATCATGTGCGCACACCTCGGTCTAGTCTG
Found at i:17310742 original size:26 final size:26
Alignment explanation
Indices: 17310713--17310765 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17310703 TCGGTTCGAT
* *
17310713 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
17310739 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
17310765 C
1 C
17310766 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:17311668 original size:26 final size:26
Alignment explanation
Indices: 17311619--17311671 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17311609 CCAGTCTGAT
* *
17311619 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
17311645 CTTAGACGGGGAATGAA-TGCCGTATG
1 CTTAGACGGGGAATGAACT-CCGTATG
17311671 C
1 C
17311672 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCGTATG
Found at i:17314069 original size:901 final size:901
Alignment explanation
Indices: 17309100--17326440 Score: 21143
Period size: 904 Copynumber: 19.4 Consensus size: 901
17309090 GGTCTAGTCT
* * *
17309100 GATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCAGGCGGGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * *
17309165 GGGCGGGCACTACGCCGGCCAGACACACGGGATGCGCAAGCCGTGGATCGGTAGGGTGGTAGGTG
66 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
17309230 GGTTTAGGCACATCTTCATATTTCT-AAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
131 GGTTTAGGCACATCTTCATATTTCTGCA-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
17309294 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
195 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* **
17309359 TTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTTCCCCAAACTT
260 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
*
17309424 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGT
325 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
17309489 ACAAGATTGTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGC
390 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
17309554 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
455 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
** * * *
17309619 GGGCCAATATAAGTTCCAAGTACCAGCACCCATCGTACATCATGTGCGCGCATCCCCCCCAGTC-
520 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-GCA-CACCCCC-GGCG
* * *
17309683 CCCCCGATCATCGGAACCCCAATGCCG-CTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGC
582 CCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGC
* * * * * * * *
17309747 CCCGACAAAGAAAAACGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGTAATCCTCGA
646 CCCG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * * * *
17309812 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTTTGCTTAGACTGGGAATGAACTTCATATGCC
710 TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * ** * *
17309877 TAAGTCAACCCCATGAAACGAGCGTGCGGGCGCTCAGCTGGTTAGAGGGGCGGGATGCGTAAGTC
775 TAAGTCAA-CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * * * ** **** *
17309942 GGGGGTCTGCCGGGTGCCCCTCTATGTGCTGCCGATCCTATTGTTACAACCCTCGATCTGGTGC
839 GGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCTATCTGGT-C
* * * * *
17310006 AATCTTACACCGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGA------------GA
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * * * *
17310059 GGGTGGGCACTACGTCGGCCAGAGAGACAGGATGCACAAGCTGTGGATCGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
17310124 GGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
131 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
17310189 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCCAGATGACTCGTTTTCTATTTTTCATGATTT
196 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
** * * * *
17310254 TCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACCTG
261 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * * * * *
17310319 GTAGACGTGATCCCTGTATTTTTGTTGGCATGCATAAAAATATTCAGCTAAAAACTCAAAATGTG
326 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* **
17310384 CAAGATTTTGTGACCATTTGAAAAAAGGGTCCCCATTTCAGACACTTTAATGGCTACTACCAGCA
391 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
17310449 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGCTAGGG
456 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * *
17310514 GGCCAATATAAGGGCCAAGTATCGGCACCCATCGCACATCATGTG-TGCACACCCCCCAGC-CCC
521 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGGCACA-CCCCCGGCGCCC
** * * * * * * **
17310577 CCGATCACCGGAACCCCAATGCCGCCGATCAGGTTTTTCGGCGATGCTCCGGTGATGGTGGCCTG
585 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGT-GCCCC
* * * * * *
17310642 GCGAAGAGAAATGCGACACCAACACTTGCCCGAGCCCAGCATGTGGTGCCGCAACCCTCAGT-CG
649 GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* * * *
17310706 GTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAAG
714 ATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * * *
17310771 TCAACCGATGAAACAAGCGTGCGGGTGCTCAACCGACCAGAGGGGCGGGATGTGCAAGCCGAGGA
779 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * *
17310836 TTGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGGAACCCTCGGT-TC-GGTTT
844 TCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTC--TATCTGG-TC
* ** * * *
17310895 GATTTTAGACTGCCAATGAACTCCGTATGTCTAAGCCAACCGACGAAACGAACGGGCGGCCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* ** * * * * **
17310960 AGGTAGGCACTACACCAGCCAGAGAGACGGGATACGCAAGTCACGGATCGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
17311025 GGTTTAGGCACATCTTCATATTTTTGCATGCCAATG-CATTTTTTTTGGCTTGTAAATTCATACA
131 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTTATGGCTTGTAAATTCATACA
* *
17311089 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATT
195 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * *
17311154 TTTGAAACTTTTTGA-GGTTTGAGATTTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAC
260 TTTGAAACTTTTT-ACGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * * *
17311218 TTGGTAGACCATGATCCTTGTATTTTTGTT-GCATGCAC-AAATATTTCAACT-AAAACTCAAAG
323 TTGGTAGA-CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
17311280 TGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
387 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * *
17311345 AGCAAACTTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGCTCTCGAGGTTTGATGAGGGAT
452 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
17311410 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-ACACAACCCCCCCT
517 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGGCAC-A---CCCC-
* * * * *
17311474 CGGC-CCCTCCGATCGCCAGAACCCCAATGCCGTCGGTCAGCTTCTCTGACGATGCTACGGCGAT
577 CGGCGCCC-CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGAT
* * * * *
17311538 GGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAAAC
641 GGTGCCCC-GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * *
17311603 CTCGGTCC-AGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACGGGGAATGAA-TGCC
705 CTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT-CC
* * * * *
17311666 GTATGCCTAAGTCAACCCAGGAAACGAGCGTGTGGTCGCTCAGTCGGCCAGAGGGGCGGGATGTG
768 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* *
17311731 CAAGCTGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGATCT
833 CAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCTATCT
17311796 GGTCC
898 GGT-C
* * * * *
17311801 AATCTTAGACTGGGAATGAACTCTGTATGCCTAACCCAACCGATGAAATGAGCGGGCAGACGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG--G-C-GG-
* * * * * *
17311866 AGACGGGCGGGCGGGCACTATGTCGGCCAGAGCGATGGCATGCGCAAGCCGTAGATCGATAGGGT
60 -G-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
*** *
17311931 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCGATGCCATTTTTATGGCTTGTAAAT
123 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
* * *
17311996 TCATACAATGGTACCTTATGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
188 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * **
17312061 CACGATTTTTGAAACTTTTTACGGTTCGGGTTTTTTTTAAATTTTTTCGAAAGGAGTTTTGGGTC
253 CACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* *
17312126 CAAACTTGCTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTC
318 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * *
17312191 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAAAGGCTAT
383 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
17312256 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
448 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
17312321 GGATAAGGGGCCAATATAATGGCCAAGTACCAGCACCCATTGCACATCATGTGC-GCACACCCCC
513 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGGCACA--CCC
* * * * * * *
17312385 TCTCGGC-CCCTCCGTTCGTCGGAACCCCAATGTCGCCGATCAGCTTCTTCGACGATGCTACGGC
576 -C-CGGCGCCC-CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGC
* * * *
17312449 GATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGGTACCGTA
638 GATGGTGCCCC-GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * * * * * *
17312514 AACCTTGATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTATACTGGGAATGAACAC
702 ACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * * * * * *
17312579 CGTACGCCTAAGTCAACCCAGGAAATGAGCATACAGTCGCTCAGCCGACCAGAGGGGCGGGATGT
767 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
*
17312644 GCAAGCTGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTC-AGT
832 GCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCTA-T
17312708 CTGGTCC
896 CTGGT-C
* * * **
17312715 GATCTTAGACTGGGAATGAACTCCATATGCCTAATCCAACCGACGAAACGAGCGGACGGAAGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
** * *
17312780 GGGCGGGCACTACGTTGGTCAGAGAGACGGCATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
17312845 CGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
131 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * **
17312910 TGGTCCCTTATGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTT
196 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * * *
17312975 TTGAAACTTTTTACGGTTTGGAATATTTTAAAATTTTTTTGAAAGGAGTTTTAGG-CCCAAACTT
261 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GGCCCCAAACTT
* * *
17313039 GGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAATATTCAG-TAAAAAACTCGAAGTG
325 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTG
* * *
17313103 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAAAGGCTATTGGCAG
389 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
17313168 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
454 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
*
17313233 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTGCACACCCCCGACGC
519 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-GCACACCCCCGGCGC
* * * * * * * *
17313298 CCCCGACCGTCGAAACCCCAATGCGGCCAGTCAGGTTCTCCGATGATGCTCCGGCAATGGTACCC
583 CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCC
* * * * * *
17313363 CAGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATCTGCTGTCGTAACTCTCGGTC
648 C-GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * *
17313428 CGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTA
712 CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * **
17313493 AGTCAACCCACGAAACGAGCGTACGGGTGCTCAGTCGGCTAGAGGGGTAGGATGCGCAAGCCGGG
777 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * *
17313558 GATCGATCGGGTCCCTCTCTGCGTGCTGTCGATCCTGCT-CCGCAACCCTCTATCTGGTC
842 GATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCTATCTGGTC
* *
17313617 CATTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGG
1 GA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* **
17313682 CGGGTGGGCACTACGTTGGCCAGAGAGAC-GGATGCAG-AAGCCGTGGATCGATAGGGTGGTAGG
65 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC-GCAAGCCGTGGATCGATAGGGTGGTAGG
* ** **
17313745 TGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGTTATTTTTATCACTTGTAAATTCATAC
129 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
** *
17313810 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATAACTCGTTTTCTATTTTTCATGA-
194 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** *
17313874 TTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
259 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
17313939 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATACAGCTACAAACTCGAAGTG
324 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
17314004 TACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAG
389 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
17314069 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
454 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
*
17314134 GGGGCCAATATAAGGAG-CAAGTACCAGCACCCATCGCACATCATGTGCGCGCAC-CCCCTGGC-
519 GGGGCCAATATAAGG-GCCAAGTACCAGCACCCATCGCACATCATGTGCG-GCACACCCCCGGCG
* * * *
17314196 CTCTCCGATCGCCGAAACCCTAATGCCGTCGGTCAGGTTCTCCGACGA---T---GC--TGGTGC
582 C-CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGC
* *
17314253 CCCGACGAAGAAAAATACGGCACCGGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
646 CCCG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * * * ** * * *
17314318 TTCGGTCCGATATTAGGCTGGGAATTAACTTTGTATGCTTAGATTAGGAATGAACTCCATATGCC
710 TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * * *
17314383 TAAGTCAACCAACGAAACAAGTGTGCGGGCGTTTAGCCGGCCAGAGGTGCAGGATGCGCAAGCCG
775 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * * *
17314448 GGGATCGATCGGGTCCCCCTCTACATACT-ACAGATCCTGCTACCGCAGCCTTCGATCCT-GTCC
840 GGGATCGGTCGGGTCCCCCTCTACGTGCTGTC-GATCCTGCTACCGCAACCCTCTAT-CTGGT-C
* * * * *
17314511 GATCTTAGACTGAGAGTGAACTCCGTATGCCTAAGCCAATCGATGAAACGA--------GCGGGT
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * *
17314568 GGGCGGGCACTACGCCGGTCAGAGAGATGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * ** *
17314633 GGTTTAGCCACATCTTCATATTTCTACATGCCAATGCCATTTTTATATCATGTAAATTCATACAA
131 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
17314698 TGGTCCCTGAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
196 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
** * * * *
17314763 TCAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACTTG
261 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * *
17314828 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATACAGCTACAAACTCGAAGTGTA
326 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
17314893 CAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGTA
391 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
17314958 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGATTGATAAAGGATAGGG
456 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * *
17315023 GGACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTG-AGCACACCCCCCGGCCCCC
521 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGGCACA-CCCCCGGCGCCC
* * *
17315087 CCGATCGTCGGAACCCCAATGCCGTAGGTCAAGTTCT-C--CG--G-T-----GATGGTGCCCTG
585 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCC-C
* * *
17315141 GTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCCGCAA-CC-C--T-CG
649 GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
17315201 ----G----T---C------TG-A-TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAG
714 ATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * ** * * * * *
17315245 TCAACCCACGAAACGAACGTGCGGGTGCTCAACCGATCGGAAGGGCTGGATGCGTAAGTCGGGGA
779 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * * * * *
17315310 TCAGTCGGGTCCCCCTCTATGTTCTATCGATCTTGCTGCTGCAACCCTCAATCTGGTCC
844 TCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCTATCTGGT-C
* * * * * * * * *
17315369 AATCTTAGACTAGGAATCATCTCCGTACAG-CTAAGTCAACTGACGAAACGAGCGGGTGGGTGGG
1 GATCTTAGACTGGGAATGAACTCCGTA-TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * * **
17315433 CGGGTGGGCACTACGCCAGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGAC
65 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * ** *
17315498 GGGTTTAGACACATCTTCATATTTTTGCATTTCAATGCCATTTTTATGGCTTGTAAATTTATACA
130 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
17315563 ATGGTCCTTTAAGCCTTCACGT-AGAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGAT
195 ATGGTCCCTTAAGCCTTCACGTGA-AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * ** ** * *
17315627 TTTTTAAACATTTTACGGTTCAAGA-TTTTTAAAATTTTTT-AAAAGGAGTTTTTGCCCCAATCT
259 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
17315690 TTGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGGAGTG
324 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
17315755 TACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCGTTTCAGACACTTTAATGGCTACTGGCA
389 TACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
17315820 GCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGTGATA
453 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* ** *
17315885 GGGGGCCAATATAAGGGCCAAGAAATAGCACCCATCACACATCATGTGC-GCACACCCCCCCCGG
518 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGGCACA---CCCCCGG
* ** * * ** *
17315949 CCCCCCCGATCACCGAAACCCCAATGTCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTG
580 CGCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTG
** * * * *
17316014 CCTTGGCGAAGAAAAATGTGACACCAGCAAATGCCCGAGCCCAGCATGTGCTACCTGGC-ACCCT
645 CC-CCGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC--GCAACCCT
* *** * * * *
17316078 TGGAGTGGTCTGATCTAAGACTGGGAATGAACTCCGTATGCTTAGACCGGGAATGAACTCCGTAT
707 CGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
** * *
17316143 GCCTAAGTCAACCCATTAAACGAGCATGCGGGCGCTCAGCCGGCCAGATGGGCGGGATGCGCAAG
772 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * ** * * * * *
17316208 TCGGGGATCGGCCGGGTCCCCCTCTGCGTTTTGTAGATCCTACTACCCCAACCATC-AGTCTAGT
837 CCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCTA-TCTGGT
17316272 C
901 C
*
17316273 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--------GCGAG
1 -GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * *
17316330 CGGGCGGGTACTACGCCGGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGC
65 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
17316395 CGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTATAAATTCATACA
130 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * **
17316460 ATGGTCCCTTAAGCCCTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATT
195 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
** * * * *** *
17316525 TTTGAAACTTTTTGTGGTTCGAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTTGAAACAAACAT
260 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * * *
17316590 GGTAGATGTGATCCTTGTATTATTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAATTGT
325 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
17316655 GCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAGC
390 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * *
17316720 AAACCTATAAAATCTCAAATGCTC--TAAGGGGGTGTGAGTTCTTGAGGTTTGATAAGGGATAGG
455 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
17316783 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC-GCACACCTCCCCCGGCC
520 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGGCACA---CCCCCGGCG
* * * * *
17316847 CCCCCAATCGTCGAAACCCTAATGCCGTCGGTCAGGTTCTCCAACGATGCTCCGTCGATGGTGCC
582 CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCC
* * * * **
17316912 CCTGTGAAGAAAAATGTGGCCCCAGCAAATGCCCGAGCCCAGCATGTGCTGCCATAACCCTCGGT
647 CC-GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * *
17316977 CCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAAACTGGGAATGAACTTCGTATGCCT
711 CCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * *
17317042 AAGTCAACCCACGAAACGAGCATGC-AGCGCTCAGCCGGCCAGAGGGCCGGGATGCGTAAGCCGA
776 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * ** * *** * **
17317106 GAATCGATCGAGTCCTCCTCTGTGTGCTGTTGATCCTGCTGTTGCAACCCT-TGTCCAGTC
841 GGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCTATCTGGTC
* * ** * *
17317166 TGATCTTAGACTGGGAATCAACTCCGTATGCCTACGCCAACCGACGAAACGAGCGGAAGAGCGGT
1 -GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * *
17317231 CGGGCGGGCACTCCGCCGGTCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGT
65 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
17317296 GGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCATGTCAATTCATACA
130 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
17317361 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATT
195 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * * * *
17317426 TTTAAAACTTTTTAAGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGACTTTTGGCTCCAAACTT
260 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
*
17317491 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
325 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
17317556 ATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTGCTGGCAGC
390 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
17317621 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGCTTGGTGAGGGATAGG
455 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * *
17317686 GGGCCAATATAAGGGCCAAGTACCAGCACCCAACACACATCATGTGC-ACACACCCCCCCGGC-C
520 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGGCACA--CCCCCGGCGC
* * * * * ** *
17317749 CCTCGATCGTCGAAAGCCCAATGCTGAC-GTCAGGTTCTCCGGTGATGCTCTGGCGATGGTGCCC
583 CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCC
* * * * *
17317813 CGACGAAGAAAAATGTGGCACCAGCAGATGCTCGAGCCCAGCATGTGCTGCAGCAACCCTCAGTC
648 CG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
17317878 CG-TCCGATCTTAGACTGGGAATGAA---C---T-C-T-G--T----ATG-----C---T---TA
712 CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * * *
17317916 AGTCAACCCAAGAAACGAGCGTGCGAGCACTCAACCGGCCAAAGGGGCGGGATGCACAAGCTGGG
777 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * *
17317981 GATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCT-GC-CATCGCCTTTAGT-TCGGTC
842 GATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAAC-CCTCTA-TCT-GGTC
* * * * * *
17318041 TGATCCTAGACTGGGAATGAACTTCGTATGCCTAAGCTAACCGACAAAACGAGAGGGCAGGCAGG
1 -GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GG
* * *
17318106 CGAAAGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCATGCCGTGGATCGATAGGGTGGT
64 -G--CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * *
17318171 ATGTGGGTTTAGGCACATCTTCACATTTCTGCATTGCCAATGCCATTTTTATGCCTTGTAAATTC
126 AGGTGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAATGCCATTTTTATGGCTTGTAAATTC
17318236 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
190 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * *
17318301 CAATTTTTGAAACTTTTTACGGTTTGGGTTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
255 CGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* * *
17318366 AACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACGAAAAAATTCAGCTAAAAACTTGA
320 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * ***
17318431 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCGTTTTAGACACTTTAATATTTACTG
385 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * *
17318496 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGCGAGAGTTCTCCAGGTTTGATGAGGG
450 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
17318561 ATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCAATCGCACATCATGTGC-GCACACCCCAGG
515 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGGCACACCCC-CG
* * * * *
17318625 GCCCCCCCGATCGTCGGAACCTCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGCT
579 GCGCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGT
* * * * * * *
17318690 GTCCTGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCACGTGCTACCGTAACCCTC
644 GCCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * **
17318755 GGTCC-AGTCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTATAT
708 GGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * * * * **
17318819 GCCTAAGTCAACCCCCAAAACG-GCGTGCAGGCACTCAGCCCGCCATAGGGGTGGGATGCATAAG
772 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * * * ** * ** *
17318883 CCGGGGATTGGTCGAGTCCCTCTTTGCGTGTTACCGATCCTGCTGCCATAACCCT-TGGTCTGGT
837 CCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCT-ATCTGGT
17318947 C
901 C
* * *
17318948 TGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGAGCGGG
1 -GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * * * *
17319013 CGGGCAGGGCACTATGCCAGCCAGAGAGACGGGATGCACAAGCCGTGCATCGATAGGGTGATAGG
65 CGGGC-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
17319078 TGGGTTTATGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
129 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
17319143 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCACGAT
194 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** * * * * *
17319208 TTTCAAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTTGCCCCAAACT
259 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* *
17319273 TGGTAGACGTGATCCTTGTA--------GGCATGCACAAAAAAATTCAGGC-AAAAACTCAAAGC
324 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA-GCTAAAAACTCGAAGT
* *
17319329 GTACAAGATTTTGTGACCAATTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTA
388 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
17319394 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTTGATGAGGGATA
453 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
17319459 GGGGGCCAATATAAGGGCCAAGTAACAGCACCCACCGCACATCATGTGC-GCACACCCCCTGC-C
518 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGGCACACCCCCGGCGC
* * * *
17319522 CCCCGATC-ACTGGAACCTCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGACGATGGTGCC
583 CCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCC
* * *
17319586 CCGACGAAGAAAAATGCGACTCCAGCACATGCCC-AGCCCAGCATGTGCTGCCACAACCCTCGGT
647 CCG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * * *
17319650 CC-AGTCCGATCTTAGACTGGGAATGAGCTTCGTGTGCTTAGACCGGGAATTAACTCCGTATGCC
711 CCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * *
17319714 TAAGTCAACCCACGAAACGAGCGTGCGGGAGCTCAGCCGG-CAGAGGGGCAGGATGCGCAAGCTG
775 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * ** * *
17319778 GGGATCGGCCGGGTCCCCCTCTGTC-TACTATCGATCCTGATGTCGCAACCCT-TGGT-TCGATT
840 GGGATCGGTCGGGTCCCCCTCT-ACGTGCTGTCGATCCTGCTACCGCAACCCTCT-ATCT-G-GT
*
17319840 T
901 C
* **
17319841 GATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACG-AA--A----G-GAACGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* *
17319898 GGGCGGGCACTACGCCGACCAGGGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
17319963 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGGAAATTCATACAA
131 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * **
17320028 TGGT-CCTTAAGCCTTCACATGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATAATTT
196 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
** * * * *
17320092 TCAAAACTTTTTACGGTTTGGGATTTTTTATAATTTTTTCGGAAGGAGTTTTGGGCCCAAACTTA
261 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * *
17320157 GTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCTAATGTGT
326 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA-GTGT
* *
17320222 ACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTGCTGGCAG
390 ACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
17320287 CAAACTTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATAG
454 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * **
17320351 GGGGCCAATATAAGGGCCAGGTACCAGCAGCCATCACACATCATGTG-GGCACACCCCACCCCAG
519 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGGCACACCCC-CGGC-G
* * ** * *
17320415 CCCCCCGATCGTTGGAACCCCAATGCCGTCGGTCAGGTTCTCCAATAATGCTCCAGCGAGGGTGC
582 -CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGC
* *
17320480 CCCGGTGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
646 CCC-GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* *
17320545 TCC-AGTCCGATCTTTGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
710 TCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* ** * * * * * *
17320609 CTAAGTCAACCCACGAAATGAGCGTGCTAGCGCTCAGTCAGCCAGAGGGGCGAGATGGGTAAGCT
774 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
** * ** * * * ** * *
17320674 GGGGATCGACCGGGACCCCCTCTATTTGCTATCGATCCTGTTTCAACAACCCT-TGGTCCGGTC
839 GGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCT-ATCTGGTC
* * *
17320737 TGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACAGATGAAACGAGCGGGCGGGCGGG
1 -GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC---
* *
17320802 AGGGCGGGCGGGCACTACGCCGGCAAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGT
62 -GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
17320867 AGCTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
126 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
17320932 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAGTCGTTTTCTATTTTTCAC
191 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * *
17320997 GA-TTTTCAAAATTTTGT--GGTTCGGGATGTTTTAAAATTTTTTCGGAAGTAGTTTTGGCCCCA
256 GATTTTTGAAACTTTT-TACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* *
17321059 AACTAGGTAGACGTG-TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
320 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
17321123 AGTGGACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTA
385 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
17321188 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGCTGAGGG
450 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * * * * *
17321253 ATAGGGGGCCAACATAAGGGTCAAGTACTAGCACCCATCGAACATCATGT-CCGTACACCCCCCG
515 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGGCACA-CCCCCG
* * * * * * *
17321317 GC-CCCCCTGATC-ACTGCAACCCCAATGCCGTCAGTTAGGTTCTCTGATGATGCTCTGGCGATG
579 GCGCCCCC-GATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATG
* * * * *
17321380 GTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCCTGAGCCCAGCATTTGCTGCCACAACCC
642 GTGCCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* ** * * *
17321445 TCGGT-CTAGTTTGATCTTAGATTGGGAATGAAATCGGTATGCTTAGACTGGGAATGAACTCCGT
706 TCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * *
17321509 ATGCCTAAGTCAACCCACGAAACAAGTGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
770 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * * * * *
17321574 AGACGGGGATTGGTCGGGGCCCCCTCTGCGTGCT-ACTGATCCTGCTGCCGTAACCCTC-AGTCC
835 AGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTC-GATCCTGCTACCGCAACCCTCTA-TCT
*
17321637 AGTC
898 GGTC
*
17321641 AGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGGAACGA--------GCGGG
1 -GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
*
17321698 C-GGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
65 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
17321762 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTTATGGCTTGTAAATTCATAC
130 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTTATGGCTTGTAAATTCATAC
* *
17321827 AATGGTCCCTTAAGCCTTCACATGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTTCACGAT
194 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * * **
17321892 TTTTGAAACTTTTTGCGGTTTGGGATTTTTAAAAATTTTTTCAGAAGGGGTTTTCACCCCAAACT
259 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* *
17321957 TGGTAGACGTGATCCTTGTATTTTTGTTGGCAAGCACAAAAAAATTCAGCTAAAAACTCAAAGTG
324 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
17322022 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
389 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
17322087 CAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGGTGAGTTCTCGAGGTTTGATGAGTGATA
454 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT-GTGAGTTCTCGAGGTTTGATGAGGGATA
*
17322151 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG-TGCACACCCCCTCGGC
518 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGGCACA-CCCC-CGGC
* ** * * * * **
17322215 CCCCCCGATCGTCGGAACCTTAATGCTGCCAGTCAGGTTCTCCGGCGATGCTCCAACGATGGTGC
581 GCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGC
* * **
17322280 CCCGACGAAGAAAGATGCGGCACCAGCACATGCCCGAGCCCAGCATGTACTATCGCAACCCTCAG
646 CCCG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-G
* * * * *
17322345 GT-TGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCATAGACTGGGAATGAACTTCGTATGC
709 GTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * *
17322409 CTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGTAAGCC
774 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * * ** * * * **
17322474 GAGAATCGGTCGAGTCCCCTTTTGTGTGCTG-CTGATCCTACTGCCACAACCCTCGGTCTGGTCC
839 GGGGATCGGTCGGGTCCCCCTCTACGTGCTGTC-GATCCTGCTACCGCAACCCTCTATCTGGT-C
* * * * * * **
17322538 TATCTTAGATTGGGAATGAACTCTGTATGTCTAAGCCAACCGAAGAAACGAGTGGGCGGATGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * * *
17322603 GGG-GGGACGCTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGTTAGGT
66 GGGCGGG-CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * ** *
17322667 GGGTTTAGGGACATCTTCATATTTCTGCGTGTAAATGCCATTTTTATGGCTTCTAAATTCATACA
130 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
17322732 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTTTACGATT
195 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * ** * * *
17322797 TTTGAAACTGTTTATGGTTTAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCTAAGCTT
260 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * *
17322862 GGTAGACGTGATCGTTGTATTTTTGTTCGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGT
325 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
17322927 ATAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
390 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
17322992 AAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGG
455 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
17323057 GGGCCGATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-GCACACCCCCCGGCCCC
520 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGGCACA-CCCCCGGCGCC
* *
17323121 CCCGATCG-CTGGAACCCCAATGCCGTCGATCAAGTTCTCC-A--A--------CGATGGTGCCC
584 CCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCC
* * ** *
17323174 CGACGAGGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTACAACCTTCGGTC
648 CG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* ** *
17323239 TGATCCGATCTTAGACTGGGAATGAACTCCACATGCTTAGACTGGGATTGAACTCCGTATGCCTA
712 CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
17323304 AGGT-AACCCACGAAATGAGCGTGCGGGCGGTCAGCAGGCTAGAGGGGCAGGAT-CGCAAGCCGG
777 A-GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * ** ***
17323367 GGATCGATCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTACCACAACCCTCGGTCCAATC
841 GGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCTATCTGGTC
* * *
17323428 TGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAACAAGCGAGC-GGC-GG
1 -GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * * * *
17323491 C-GGCGAGCACTGCGTCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGCTAGGT
65 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
17323555 GGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
130 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
17323620 ATGGTCTCTCAAGCCTTAACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTCACGAT
195 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTTCACGAT
* * *
17323685 TTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGGCCCAAACT
259 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
** *
17323750 TGGTAGACGAAATACTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAAGTG
324 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
17323814 TACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTTAGACACTTTAATGGCTACTGGCAA
389 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
17323879 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
454 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
*
17323944 GGGGCCAATATAAGGGACAAGTACCAGCACCCATCGCACATCATGTGC-GCACACCCCCTCGGC-
519 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGGCACA-CCCC-CGGCG
* *
17324007 CCCCCTGATCGTCGGAACCCCAATGCTGTCGGAT-AGGTTCTCCGATGATGCTCCGGCGATGGT-
582 CCCCC-GATCGTCGGAACCCCAATGCCGTCGG-TCAGGTTCTCCGACGATGCTCCGGCGATGGTG
* * * **
17324070 CCCCTGGCGAAG--AGATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGACGTAACTTTC
645 CCCC--GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * * *
17324133 GGTCTGGTGCGATCTTAGACTGGGAATGAAGTTCGTATGCTTAGACTGGGAATGAACTCCGTATG
708 GGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * *
17324198 CCTAAGTCAACCCACGAAGCGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGAAAGT
773 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* ** * * ** * *
17324263 CGAGGATCGACCGGTTCCCCCTCTGCGTGCTACCAATCCTGCTACTGCAACCCTC-ATTCTGGTC
838 CGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCTA-TCTGGTC
* * * * *
17324327 TGATCTTAGACTGGGAATGAACTCCGTCTGCCTAAGCCAATCGACGAAATGAGCGGGCAGGCAGG
1 -GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* *
17324392 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGCCGTTGATCGATAGGGTGGTAGGT
65 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
17324457 GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
130 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
17324522 ATGGTCCCTTAAGCCTTCATGTGAAGCTTCATGGCAAAAC-AGCTCGTTTTCTATTTTTCAAGAT
195 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA-CTCGTTTTCTATTTTTCACGAT
* * *
17324586 TTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGTCCCAAACT
259 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
17324651 AGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
324 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
17324716 GACAAGATTTTGTGACCATTTGAAAAAAGTGGCCCCATTTCAGACACTTTAATTGCTACTGGCAG
389 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
17324781 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
454 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
17324846 GTGGCCAATATAAGGGCCAAGTACCAGCAACCATTGCACATCATGTGC-GCACACCCCCCGGC-C
519 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGGCACA-CCCCCGGCGC
* * * * * *
17324909 CCCCGATCGTCGGAACCCCAATGCCGCCGGTTATGTTCTCCGACGATGATCCGACGGTGGTGCCC
583 CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCC
** * * *
17324974 TAACGAAGAAAAATGCGGCACCAGTACATGCCCGAACCCTGCATGTGCT---G-----CT--GT-
648 -CGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * * *
17325028 --AACC--T-TTGGCCT-GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCTTA
712 CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * * *
17325078 AGTCAACCCACGAAACAAGCGTGCGGGCACTCAGTCGACCAGAGGGGTGGGATGTGTAAGCCGGG
777 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * * *
17325143 GATCGATCGGGTCCCCCTCTACATGCTGTCGGTCCTGCTATCGTAACCCTCAATCTGGTC
842 GATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCTATCTGGTC
* * *
17325203 TGATCTTTGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA--------GCGGT
1 -GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * * * *
17325260 TGGGCGGGCACTACGTCGGCCAGAAAGACGTGATGCGCAAGCCGTGGATCGATAGGTTGGTAGGT
65 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
17325325 GGGTTCAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
130 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
17325390 ATGGTCCTTTAAGCCATCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACAATT
195 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * ** *
17325455 TTCT-AAACTTTTTACGATTCGGGATTTTTCAAAATTTTTTCAAAATGAGTTTTGGCCCCAAACT
260 TT-TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* *
17325519 TGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCA-AAACAAATTTCAGCTAAAAACTCGAAGT
324 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA-AAAATTCAGCTAAAAACTCGAAGT
* * *
17325583 GTACAAGATTTTGTGACCATTTAAAAAAACTGTCCCCATTTTAGACACTTTAATGGCTACTGGCA
388 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
17325648 GCAAACCTGTAAAATCTCCAATGCTCTTTGAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA
453 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* ** *
17325713 GGGGGCCAATAAAAGGGCCAAGTACCAGCTTCCATCGCACATCATGTGC--CTACACCCCCTGGT
518 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGGC-ACACCCCC-GGC
* ** * ** * * *
17325776 G-CCCCGATCATCAAAATCCCAATG-C--C-G-CA-CCTCT-CGACGAAGCTCCAGTGATGGTGC
581 GCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGC
* * * *
17325833 CCCGACAAAGAAAAACGCAGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCCGCAACCCTCGG
646 CCCG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * *
17325898 TCCGCTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGATTGAACTCCGTATGCC
710 TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * * * *
17325963 TAAGTCAACCTATGAAATGGGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGAGATGTGCAAGTCG
775 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * *** **
17326028 GGGATCGG-CTGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACTGCAAATTTC-AGTGGGGTGC
840 GGGATCGGTC-GGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCTA-TCTGGT-C
* * * ** *
17326091 AATCTTAGACTCGGAATGGACTCCGTATGCCTAAGCCAACCGGTGAAATGA------------GC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * * *
17326144 GGGCGGGCACTACGTCGGCCAGAGAAACGGGATGCACAAGCCGTGGATCGATGGGGTGGTAGGTG
66 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
17326209 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC-A
131 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * *
17326273 TGGTCCCTTAAGCCTTCACGTGAGGTTTCAAGGCAAGACGACTCGTTTTTTATTTTTCATGATTT
196 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * * *
17326338 TTGAAACTTTATGCGGTTCAGGATTTTTTTAAATATTTTCGGAAGGAGTTTT-GCCACCAAACTT
261 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC-CCAAACTT
* *
17326402 GGTAGACATCATCCTTGTATTTTTGTTGGCATGCACAAA
325 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
17326441 TGCTCTTTAA
Statistics
Matches: 14318, Mismatches: 1758, Indels: 741
0.85 0.10 0.04
Matches are distributed among these distances:
857 2 0.00
858 158 0.01
859 4 0.00
860 2 0.00
861 59 0.00
862 4 0.00
863 1 0.00
864 103 0.01
865 162 0.01
866 196 0.01
867 54 0.00
868 481 0.03
869 4 0.00
870 1 0.00
871 3 0.00
872 4 0.00
873 28 0.00
874 66 0.00
875 56 0.00
876 183 0.01
877 8 0.00
878 60 0.00
879 92 0.01
880 408 0.03
881 90 0.01
882 288 0.02
883 247 0.02
884 76 0.01
885 38 0.00
886 162 0.01
887 506 0.04
888 378 0.03
889 271 0.02
890 102 0.01
891 418 0.03
892 743 0.05
893 235 0.02
894 593 0.04
895 592 0.04
896 626 0.04
897 320 0.02
898 230 0.02
899 235 0.02
900 385 0.03
901 1010 0.07
902 621 0.04
903 436 0.03
904 1034 0.07
905 443 0.03
906 824 0.06
907 187 0.01
908 78 0.01
909 147 0.01
910 55 0.00
911 2 0.00
912 20 0.00
913 57 0.00
914 545 0.04
915 185 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGGCACACCCCCGGCGCCCC
CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGC
GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGAT
CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
GGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCTATCTGGTC
Found at i:17316131 original size:26 final size:26
Alignment explanation
Indices: 17316095--17316144 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17316085 GTCTGATCTA
*
17316095 AGACTGGGAATGAACTCCGTATGCTT
1 AGACCGGGAATGAACTCCGTATGCTT
17316121 AGACCGGGAATGAACTCCGTATGC
1 AGACCGGGAATGAACTCCGTATGC
17316145 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (26 bp):
AGACCGGGAATGAACTCCGTATGCTT
Found at i:17317023 original size:26 final size:26
Alignment explanation
Indices: 17316987--17317039 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17316977 CCGGTCCGAT
*
17316987 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAAACTGGGAATGAACTTC-GTATG
17317013 CTTAAACTGGGAATGAACTTCGTATG
1 CTTAAACTGGGAATGAACTTCGTATG
17317039 C
1 C
17317040 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTTCGTATG
Found at i:17318797 original size:26 final size:26
Alignment explanation
Indices: 17318768--17318820 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17318758 CCAGTCTGAT
*
17318768 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTATATG
*
17318794 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCTATATG
17318820 C
1 C
17318821 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTATATG
Found at i:17321496 original size:26 final size:26
Alignment explanation
Indices: 17321460--17321512 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17321450 CTAGTTTGAT
* *
17321460 CTTAGATTGGGAATGAAATCGGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
17321486 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
17321512 C
1 C
17321513 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:17322394 original size:26 final size:26
Alignment explanation
Indices: 17322358--17322408 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17322348 GGTCCGATCT
17322358 TAGACTGGGAATGAAC-TCTGTATGCA
1 TAGACTGGGAATGAACTTC-GTATGCA
17322384 TAGACTGGGAATGAACTTCGTATGC
1 TAGACTGGGAATGAACTTCGTATGC
17322409 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTTCGTATGCA
Found at i:17324182 original size:26 final size:26
Alignment explanation
Indices: 17324146--17324198 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17324136 CTGGTGCGAT
* *
17324146 CTTAGACTGGGAATGAAGTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17324172 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17324198 C
1 C
17324199 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17325939 original size:26 final size:26
Alignment explanation
Indices: 17325902--17325961 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
17325892 CCTCGGTCCG
17325902 CTCCG-AT-CTTAGACTGGGAATGAA
1 CTCCGTATGCTTAGACTGGGAATGAA
* *
17325926 CTCCGTATGCTTAGATTGGGATTGAA
1 CTCCGTATGCTTAGACTGGGAATGAA
17325952 CTCCGTATGC
1 CTCCGTATGC
17325962 CTAAGTCAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 25 0.78
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (26 bp):
CTCCGTATGCTTAGACTGGGAATGAA
Found at i:17326720 original size:26 final size:26
Alignment explanation
Indices: 17326691--17326743 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17326681 CCGGTCTGAT
*
17326691 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17326717 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17326743 C
1 C
17326744 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17328374 original size:26 final size:26
Alignment explanation
Indices: 17328344--17328396 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17328334 ATTGACTTAG
*
17328344 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17328370 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17328396 G
1 G
17328397 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17330115 original size:26 final size:26
Alignment explanation
Indices: 17330085--17330137 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17330075 GTTGACTTAG
* *
17330085 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17330111 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17330137 G
1 G
17330138 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17331886 original size:26 final size:26
Alignment explanation
Indices: 17331857--17331908 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
17331847 GTTGACTTAG
17331857 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17331883 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17331909 AATCAAACCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17333775 original size:26 final size:26
Alignment explanation
Indices: 17333746--17333798 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17333736 GTTGACTTAG
*
17333746 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
17333772 GCATACAGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17333798 G
1 G
17333799 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17334682 original size:26 final size:26
Alignment explanation
Indices: 17334645--17334697 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17334635 GTTGACGTAG
17334645 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
*
17334671 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
17334697 G
1 G
17334698 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:17335179 original size:27 final size:27
Alignment explanation
Indices: 17335121--17335179 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
17335111 ACTCCTACCG
* **
17335121 AAAAAGTTTTAAAAAATCCTGAACCAT
1 AAAAAGTTTTAAAAAATCATGAAAAAT
*
17335148 AAAAAG-TTTCAAAAATCATGAAAAAT
1 AAAAAGTTTTAAAAAATCATGAAAAAT
17335174 AGAAAA
1 A-AAAA
17335180 CGAGTCGTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 17 0.63
27 10 0.37
ACGTcount: A:0.59, C:0.10, G:0.08, T:0.22
Consensus pattern (27 bp):
AAAAAGTTTTAAAAAATCATGAAAAAT
Found at i:17335570 original size:26 final size:26
Alignment explanation
Indices: 17335540--17335592 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17335530 GTTGACTTAG
17335540 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17335566 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17335592 G
1 G
17335593 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17336491 original size:26 final size:26
Alignment explanation
Indices: 17336439--17336491 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17336429 ATTGACTTAG
* * *
17336439 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAATATAA
17336465 GCATACAGAGTTCATTCCCAATATAA
1 GCATACAGAGTTCATTCCCAATATAA
17336491 G
1 G
17336492 ATCTGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATATAA
Found at i:17337812 original size:894 final size:894
Alignment explanation
Indices: 17333047--17338675 Score: 7244
Period size: 894 Copynumber: 6.3 Consensus size: 894
17333037 GCGATCACCG
17333047 GGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
1 GGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
***
17333112 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG-TTTTACTTCTTTGCTGCC
65 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * * * *
17333176 GGTAGCCATTAACGTGTCTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATATT-TACACTA
130 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
17333240 CGATTTTTTAGCTGAATTTTTTTGTGCGTG-CAAACAAAAATACAAGGATCATGTCTACCAAGTT
195 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA-AAAAATACAAGGATCACGTCTACCAAGTT
* * ** *
17333304 TGGGGCCAAAAATCCTTCCAAAAAATTTTAAAAAAATCCCGAACCACAAAAAGTCT-AAAAATCA
259 TGGGGCCAAAACTCCTTCAAAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
* * *
17333368 TGAAAAATAGAAAACGAGTCGTATTGCCATGAAACTTCACGCGAAGGCTTAAGGGACAATTGTAT
323 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
17333433 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGGTGTGCCTAAACCCACCTG
388 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* *
17333498 CCACCCTATCGATCCACGGCTTGCGCATCACGTCTCTCTGGCCAGGAG-AGTGCCCGCCCGCCCA
453 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GGCGTAGTGCCCGCCCG----
*
17333562 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA-TCCTAGTCTAAGATC-AGACCGAG
513 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGA-
* * * * * * *
17333625 CTGAGGGTTGCGACAGCAGGATCGATAGCACGTAGAGGGGGACCCG-GTCGATCGCCGGCTTACG
576 CCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACTCAATCCCCGGCTTACG
* *
17333689 CATCCCACCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
641 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * *
17333754 AGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCGCAGTCTAAGATTGGACCAGACCGAGGGTT
706 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
** * * * *
17333819 TTG-TAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACGATCA
771 GCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCA
* * * **
17333883 CCGGAGCATCGCCGGAGAACCTGACCGGCGGCGTTGGGTTTCCGGTGATCGGGGGGGCC
836 CCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC
* *
17333942 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCT
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
17334007 CTCATCAAACTTCTAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * *
17334072 GTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTGCACTTT
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
17334137 GAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAGCAAG-TTG
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * * *
17334201 GGGCCAAAACACCTTCCAAAAAATTTTCAAAAAACCCCGAACTG-CAAAAGTTTCAAAAATCGTG
261 GGGCCAAAACTCCTTCAAAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
* * * *
17334265 AAAAATAGAAAACGAGTCGTTTTGCCATGAAACTTCAGGTGAAGGCTTAAGGCACTATTGTATGA
325 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
17334330 ATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATAAAGATGTGCCTAAACCCACCTA-C
390 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
17334394 ACCATATCAATCCACGACTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCTGCCCGCCCGCCC
455 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGCCCGCCC
* * ** * *
17334459 GCTCGCTTGTTTTGTCGGTTGGCTTAAGCATATAGAGTTCATTCCCAGTCTAAGATTGTACCAGA
516 GCT--C--GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACC-GA
* * * * * *
17334524 CCAAGGGTT-CTGGTAGCAAGATC-AGCAGCACACAGAGGGGGACACGAC-CAATCCCCGGCTTG
576 CCGAGGGTTGC-GGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGACTCAATCCCCGGCTTA
* * * * * ** *
17334586 TGCATCCCGGCCCTCGGGTCGGCTGAGCGCCCGCACGTTTATTTCGTGGGTTGACGTAGGCATAC
639 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * *
17334651 GAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGG
704 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
* * *
17334716 TTGCGGCAGCACATGCTGGGATCGGGCATGTGCTGGTGCCGCATTTTTCTTCAACGGGGCACCAT
769 TTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT
* * * *
17334781 CCCCAGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCG-CTGATCGGGGGGGTC
834 CACCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC-GATCGGGGGGGCC
** * *
17334842 GGGGGAGTGTGCGTGCATGATGTGCAATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATC
1 GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
17334907 CCTCATCAAACCTTGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
65 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
17334972 AGTAGCCATTAAAGTGTCT-AGAATGAGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACT
130 AGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
17335036 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
194 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
* * * * *
17335101 TGGGGCCAAAACTCCTACCGAAAAAGTTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCA
259 TGGGGCCAAAACTCCT-TCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
17335166 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
323 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
17335231 AAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTA
388 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* ** * *
17335296 CCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCTAGTGTAGTGCCCGCCCGCCCTC
453 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * * * * **
17335361 TCG-TTCCTCAGTTGGCTTAGGCATACGGACTTCATTCCCAGTCTAAGCTCGGACCTGACCGAAA
518 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACC-GACCGAGG
** * ** * * * * * * * * * *
17335425 GTTTTGACAATAGGATCGGCAGCACGCAAAAGGGGAACTG-GTCGATTCCCGGCTTGCGCATCTC
582 GTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACTCAATCCCCGGCTTACGCATCCC
* *
17335489 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCTTTTCATGGGTTGACTTAGGCATACGGAGTTCA
647 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
**
17335554 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTA
712 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACA
* * * *
17335619 GCACATGCTGGGCTCGGGCATGTGCT-GTGCTG-ATTTTTCTTCGCTGGGGCACCATCGCCGGAG
777 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAG
* * * *
17335682 CATTGCCGGAGAACCTGACCGGCGGCATTGGGTTTCCGACGATCGGGGGGCCGAGCGG
842 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGG--G-GC-C
* *
17335740 GGGGGCGTGTGCGCACATGATGTGTGATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATC
1 GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * **
17335805 CCTTATCAAACCTCAAGAACTCGTACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
65 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
17335870 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTTCAATT
130 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
17335935 TGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACTAAGTTT
195 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * *
17336000 GGGTCCAAAACTACTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCCAAAATCGT
260 GGGGCCAAAACT-CCTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
* * * *
17336065 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA-GCCGAAAGCTTAAGGGGCCATTTTAT
324 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG-TGAAGGCTTAAGGGACCATTGTAT
* *
17336129 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATGTGAAAATGTGCCTAAACCCACCTA
388 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * ** * *
17336194 CCACCCTATCGATCCACGGCTTACGCGTCCCGTCTCTCTGGTCGATGTAGTGCCCGCTCGCCCAC
453 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * * * *
17336259 TCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACTGGACCGTA-
518 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAAC-CGACCG-AG
* * * * * * *
17336323 GGTTGCAGCCA-TAGGATCGACAACACACGGAGGGGGACCCGA-TCGATCCCCGACTTACGCATC
581 GGTTGC-GGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACTCAATCCCCGGCTTACGCATC
* * * * ** *
17336386 CCGTCCCTCTGGCCGGCTGAGCGCCCGCACGTTCATTTCATGCATTGACTTAGGCATACAGAGTT
645 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * * * *
17336451 CATTCCTAGTCTAAGCATACAGAGTTCATTCCCAATATAAGATCTGACCAGACCGAAGGTTGCCA
710 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGA
* * * *
17336516 CAGCACATGCTGGGCTCGAGCATGTGCTGGTACTGCATTTTGCTTCACC-GGG---C--CACC--
775 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGG
* *
17336573 ATCAT---CGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC
840 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC
* * *
17336625 GGAGGGGTGTGCGCGCATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATC
1 GG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
17336690 CCTCATCAAACCTCAAGAACTCACACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
65 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
17336755 AGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTT
130 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * * *
17336820 CAAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAACACAAGGATCATGTCTGCTAAGTTT
195 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
** *
17336885 GGGAG-CAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCG
260 GGG-GCCAAAACTCCTT-CAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
* *
17336949 TAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTAT
323 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* ** *
17337014 GAATTTACAAGCCATAAAAATGGCATTGGTACACA-AAATATGAAGATGTGCCTAAACCCACGTA
388 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
*
17337078 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGA
453 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* *
17337143 TCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGG
518 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACC-GACCGAGG
* * * * * * *
17337208 GTTACGGTAGCAGGATCGATAGCACGTAGAGGGGGACCCGACT-AATCCTCGGCTTATGCATCTC
582 GTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACTCAATCCCCGGCTTACGCATCCC
* * * * * * * **
17337272 ACCCTTCTGGCCGGTTGAGCTCCCTCACGTTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTTT
647 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * ** *
17337337 TTCCCAGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGACA
712 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACA
* *
17337402 GCACATGCTGGGCTCGGGCATGT-CTTGGTGCCGCATTTTTCTTCCCCGGGGTACCATCACCGGA
777 GCACATGCTGGGCTCGGGCATGTGC-TGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGA
* * * * * *
17337466 GCATCGCCAGAGAACCTGACAGACGGCATTGGGATTCCAACGATCGGGTGGGCT
841 GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC
*
17337520 GGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * ***
17337585 CTCATCAAACCTCGAGAAATCACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGTTT
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
**
17337650 GTAGTGATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
17337715 GAGTGTTAAGCTAAAGTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
*
17337780 GGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATG
261 GGGCCAAAACTCCTTC-AAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
* *
17337845 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGCAGGCTTAAGGGACCATTGTAT-T
325 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * *
17337909 ATTTACAAGCCATAAAAAAGGCATTGGGACGCCA-CAATATGAAGATGTGCCTAAACCCACCTAC
390 ATTTACAAGCCATAAAAATGGCATTGGCATG-CAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
17337973 CACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCAGGCGTCGTGCCCGCCCACCTACC
454 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--------CC
* * * * *
17338038 CGCCCGCTCGTTTCGTCTGTTGGTTTAAGCATATGGAGTTCATTCCCAGTGTAAGATC-AGACCG
511 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCG
* * * * * * * * * * *
17338102 AATCGAGGGTTGTGGTAGTAAGATTG-TAGCATGCAGAGGGGGACCCGA-TCGATCCCCGACTTG
575 -ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACTCAATCCCCGGCTTA
* ** * * *
17338165 CCCATCCCGCCCCTCTGGCCGATTGACCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
639 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * * *
17338230 GGGGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAATATCGAATCAGACTGAGGG
704 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
* * * * * * * * *
17338295 TTACGACAGCACATGTTAGGCTTGAGCATGTGTTGGTTCTGCATTTTTCTTCACCGGAGCACCAT
769 TTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT
** * * * * *
17338360 CGTCGGAGCATCACCGGAGAACCTGATCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCC
834 CACCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC
* * *
17338421 GGGGGGTGGTGTCCGCACATGATGGGTGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTA
1 GGGGGGT-GTG--CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
17338486 TCCCTCATCAAACTTTGAGAACTCACACCCCATTAAAGAGCATTTCAGATTTTACAGGTTTGCTG
63 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
17338551 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
128 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
** * * *
17338616 TTCGAGTTTTTAGCTGAATGATTTTGTGCATGCCAACAAAAAGACAAGGATCATGTCTAC
193 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
17338676 AAATATGAAG
Statistics
Matches: 4123, Mismatches: 527, Indels: 159
0.86 0.11 0.03
Matches are distributed among these distances:
883 4 0.00
884 331 0.08
885 384 0.09
886 6 0.00
887 1 0.00
888 1 0.00
889 5 0.00
890 39 0.01
892 4 0.00
893 100 0.02
894 596 0.14
895 518 0.13
896 61 0.01
897 6 0.00
898 511 0.12
899 414 0.10
900 142 0.03
901 484 0.12
902 106 0.03
903 150 0.04
904 260 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (894 bp):
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
GGGCCAAAACTCCTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCG
TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGACCGAGGGTTG
CGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACTCAATCCCCGGCTTACGCATCCCGCCC
CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAC
ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATC
GCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC
Found at i:17338847 original size:26 final size:26
Alignment explanation
Indices: 17338799--17338851 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17338789 GTTGGCTTAG
* * *
17338799 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCACTCACAGTCTAA
*
17338825 GCATACAGAGTTCACTCATAGTCTAA
1 GCATACAGAGTTCACTCACAGTCTAA
17338851 G
1 G
17338852 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCACTCACAGTCTAA
Found at i:17339703 original size:26 final size:26
Alignment explanation
Indices: 17339667--17339717 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17339657 GTTGACTTAG
*
17339667 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17339693 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
17339718 GGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17341232 original size:26 final size:26
Alignment explanation
Indices: 17341203--17341278 Score: 134
Period size: 26 Copynumber: 2.9 Consensus size: 26
17341193 GTTGACTGAG
* *
17341203 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
17341229 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
17341255 GCATACGGACTTCATTCCCAGTCT
1 GCATACGGACTTCATTCCCAGTCT
17341279 GAGATCAGAT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:17343069 original size:26 final size:26
Alignment explanation
Indices: 17343033--17343085 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17343023 GTTGACTTAG
*
17343033 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
17343059 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
17343085 G
1 G
17343086 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:17343224 original size:899 final size:898
Alignment explanation
Indices: 17339832--17347981 Score: 9563
Period size: 883 Copynumber: 9.0 Consensus size: 898
17339822 TGGGGTTTCG
* * * * *
17339832 ACGTCTACCAAATTTGGGGCTAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAA
1 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* * * * * *
17339897 TGTTTCGAAAATCATGAAAAATAGAAAACAAGTGGTCTTGCCATAAAACTTCACGTGAAGGCTTA
66 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* *
17339962 AGGGACCATTGTATGAATTTACTAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTG
131 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
* * * * * *
17340027 CCTAAACCCACCTACCACCCTATCGATCCATGGGTTGTGCATCCCGTCTCTCTAGCCGACGCAGT
196 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* * *
17340092 GCCCGCTCGCCCGCCCGCTCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTTCC-AG
261 GCCCGCCCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA-TTCCTAG
* * * *
17340156 TCTAAGATCAGACCGGACCAAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGAC
325 TCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGAC
* * *
17340221 CGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
390 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * * *
17340286 TAACTTAGGCGTACAGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAATCTAAGATCG
455 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * *
17340351 GACCGGACCGAGGATTGCGACAGCAGATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTT
520 GACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
** * * * * *
17340416 TGCCGAGGCACCATCGTCAGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGTCAAT
585 CACCGGGGCACCA---TC---G--T---CGGAGAACCTGACCGGCGACATTGGGGTTCCGACGAT
* *
17340481 C-----G-GGGGGGCCGAGAGGGGTGTACGGACATG-TGTGCGATGGGTGCTGGTACTTGGCCCT
639 CGGGGGGCGGGGGGCCG-G-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
17340539 TATATTGGCCCCCTATCCCTCATCAAACTTCGACAACTCACACCCCCTTAAAGAGCATTTGAGAT
702 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * * *
17340604 TTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACATTTTTTTCGAATGGTCA
767 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
17340669 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTCCATGCCACCAAAAATACAAGGA
832 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
17340734 TC
897 TC
* *
17340736 ATGTCTACC-AGTTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAATCCCGAACCGTAA
1 ACGTCTACCAAG-TTTGGGGCCAAAAATCCTTCCGAAAAAATTTT-AAAAAATCCCGAACCGTAA
** * *
17340800 AAAGTTTTGAATATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCT
64 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * *
17340865 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGCACGCAGAAATATGAAGATA
129 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * * *
17340930 TGCCTAAACCCACCTACCAGCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTAGCCGGAGTA
194 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* * * *
17340995 GTGCCCGCCCGCCCGTTCGCCCGCCTGCTCATTTCATCGGTTGGCTTAGGAATACGGAGTTCATT
259 GTGCCCGCCC-ACC---CGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * *
17341060 CCCAAG-CTAAGATCAGACCAGACTGAGGGTCGTGGCAGCAGGATC-AGTAGCACACAAAGGGGG
320 -CCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGG
* * * * * * * *
17341123 ACCTGGCCGATCCCCGGCTTGCGCATCTCGCCCTTCTGGCCGACTGAGTGCCCGTATGCTCGTTT
383 ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * *
17341188 CGTGGGTTGACTGAGGCATGCGGAGTTCATTCCCAGTCTAAGCATACGGACTTCATTCCCAGTCT
448 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* **
17341253 AAGCATACGGACTTCATTCCCAGTCTGAGATCAGATCAGACCACGGGTTGTGGTAGCACATGCTG
513 AAG-AT-CGG-----A----C---C-G-GA-C----C-G---A-GGGTTGCGACAGCACATGCTG
* * * ** *
17341318 GGCCCGGGCATGCGGTGGTGCCGCATTTTTCTTCGTCTGGGCACCATTGCCGAAGCATCGTCGAA
552 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCA-T--C---G--TCG--G-A
* * * *
17341383 GAACCTGACCGGCGACATTGGGGTTCCGATGATCGGGTGGGCTGAGGG--GGGGTGTGTGC-C-C
606 GAACCTGACCGGCGACATTGGGGTTCCGACGATCGGG-GGGCGGGGGGCCGGGGGGTGTGCGCAC
* *
17341444 ATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTCGA
670 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
17341509 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
735 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
17341574 TCTGAAATGGGGACACTTTTTTCAAATGGTGACAAAATCATGTACACTTCGA-TTTCTTCGCTGA
800 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT-TTAGCTGA
17341638 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
864 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * *
17341673 GCGTCTACCAGGTTTGGGGCCAAAAATCCTTCC-AAAAAAATTTAAAAAATCCCGAACTGTAAAA
1 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
*
17341737 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
66 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
** * *
17341802 AGGGACCATTGTATGAGCTTACAAGCCATAAAAATAGCATTGGCATGCAGAAATATGAAAATGTG
131 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
* * ** ** * *
17341867 CCTAAACCCACTTACCACCCTTTCGATCCACGGCTTGCAAATCTTGTTTCTGTGGCCGGCGTAGT
196 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* * * * * * *
17341932 GCCTGCTCGCCCACCCACCCGCTCGTTTCATCGGTTGGTTTAGGCATACGGAGTTCATTCCCAGT
261 GCCCGCCCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGT
* * ** **
17341997 CTAAGATCAGACCAG-CCATAGGGTTGCGCCAGCAGGATCGGTAGCACGCAG-GGGGGACCCGGT
326 CTAAGATCAGACCAGACC-GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGAC
* * * *
17342060 CGATCCCCGGCTTGTGCATCCCTCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
390 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
17342125 TGACTTAGGCATACGGAGTTCATTCCCAGTAC-AAGCATACGGAGTTCATTCCCAGTCTAAGATC
455 TGACTTAGGCATACGGAGTTCATTCCCAGT-CTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
** * * * * *
17342189 -GACTAGATCGAGGGTTGCTATAGCACATGCTAGGCTCGGGCAAGTGCTGGTGCCGCATTTTTCT
519 GGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * * *
17342253 TCGCCAGGGCACCATCGTCGGAGCATCGCCAGAGAAATTGACCGGTGGCATTGGGGTTTCGACGA
584 TCACCGGGGCACCATCGTCGGAG-A--ACC--------TGACCGGCGACATTGGGGTTCCGACGA
* *
17342318 T-------CGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATAGGTGCTGGTACTTGGCCCTT
638 TCGGGGGGCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * * * *
17342376 ATATTGGCCCCCTCTCCCTCATCAAACCTTGAGAACTCGCACCCCCTTAAAGAGGATTTAAGATT
703 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * * * *
17342441 TTACAGGTTTGCCGCCAGTAGCAATTAGACTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAC
768 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
*
17342506 CAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
833 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
*
17342571 A
898 C
* * *
17342572 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAA-TTAAAAAAAACCCGAACCGTAAAA
1 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
*
17342636 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTA
66 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* * ** *
17342701 AGGGACCATTGTATGAGTTTGCAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTA
131 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
* * *
17342766 CCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGCAGT
196 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* ** * *
17342831 GCACGCTTACCCGCCCGCCCGCTCGTTCCATCGGTTGGCTAAGGCATACGGAGTTCATTCCTAGT
261 GCCCGCCCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGT
* *
17342896 CTAAGATCAGACCAGACCGAGTGTTGCGGCCAG-AGGATCGACAGCACGCAGAGAGGGACCCGAC
326 CTAAGATCAGACCAGACCGAGGGTTGCGG-CAGCAGGATCGACAGCACGCAGAGGGGGACCCGAC
* * * * *
17342960 TGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGTTCATTTCGTGGGT
390 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
17343025 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTAATTCCCAGTCTAAGATCG
455 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* *
17343090 GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT
520 GACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * *
17343155 CACCAGGGCACCATCGTCGGAGAACCTGACCGACGACATTGGGGTTCCGGCGATC-----G-GGG
585 CACCGGGGCACCATCGTCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGCGGG
* * *
17343214 GGGCCGGGGGGTGTGCGCACATGATGTGTGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCT
650 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *
17343279 TATCCCACATCAAACCTTGAGAACTCACACCTCCTTAAAGAGCATTTGAGA---T-----TTTGC
715 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
17343336 TGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
780 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
17343401 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
845 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
** * * *
17343455 ACGTCTACCAAGTTTAAGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAA
1 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* *
17343520 AGTTTCAAAAATCGTGAAAAATAG-AAATGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCTTA
66 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
*
17343584 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTG
131 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
* *
17343649 CCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCAT-TGGCCGACGTAG
196 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC-TCTGGCCGGCGTAG
* * * * *
17343713 TGCTCGCCCACCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAAGCATATGGAGTTCATTCCCAG
260 TGCCCGCCCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAG
* * * * ** * ** * *
17343778 TCTAAGATCTGACCGGACCGGGGGTTGTGATAGCAGGATCAACAGCTTGTAGATGGGGACCCGAC
325 TCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGAC
* * * * * * *
17343843 CGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCATTTTGTTGGT
390 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * *
17343908 TGACTTAGGCATAGGGAGTTCATTCCCAGTCTAACCATACAGAGTTCATTCCCAGTCCAAGATCG
455 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * *
17343973 GATCAGACCGAGGGTCGC-ACCAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCACATTTTTCT
520 GACCGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * * * **
17344037 TCACCGGGGCACCATCGCCAGAGCATC-G-CCAGAGC-ATCATCGGAGAACCTGATCGA-CGGAT
584 TCACCGGGGCACCATCGTCGGAGAACCTGACC-G-GCGA-CATTGGGGTTCC-GA-CGATCGG--
* * * *
17344098 TGAGGTTCCGACGATGAAGGGGCCGGGCGGGTTTGCACAGATGATGTGCGATGGGTGCTGGTACG
642 -G-GG----G-CG--G--GGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
17344163 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGACAACTCACACCCCCTTAAAGAGCAT
695 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * * *
17344228 TTGAGATTTTGCTGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAA
760 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * *
17344293 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTTGTGCATGCGAACAAAAGT
825 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
17344358 ACAAGGATC
890 ACAAGGATC
* ** * *
17344367 ATGTCTACCAAGTTTAAGGCCAAAAATCCTTCCGAAAAAGTTTTTAAAAAATCCCCAACCGTAAA
1 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA-ATTTTAAAAAATCCCGAACCGTAAA
* * * * *
17344432 ATGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTG
65 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
17344497 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
130 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * * * * *
17344562 GCCTAAACCAACCTACCACCCTATCGATCCATGGCTTGCGCATCCTGTCTCTATGGTCGGCGTGG
195 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * * * *
17344627 TGCCCGCCCGCCCGCCCACCCTCTCGTTTCGTCGGTTGGCTTAGGCATACTGAGTTCATTCCTAG
260 TGCCCGCCCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAG
* * * ** *** * *
17344692 TCTAAGATTAGACCAAACTGAGGGTTGCGATAGCAGGATCGACAGCTTACAGATGGGGACCCGAT
325 TCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGAC
* * * * * * * * *
17344757 CGATCCTCGGCTTGCGCATCCTGCCCCTCTAGCCTGCTGAGCACCTGTACGCTCGTTTTGTAGGT
390 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * *
17344822 TGACTTAGGCATAGGGAGTTCATTCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCCAAGATCG
455 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * *
17344887 GATCAGACCAAGGGTTGC-ACCAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCGTATTTTTCT
520 GACCGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* *
17344951 TCACCGGGGCACCATCACCAAAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
584 TCACCGGGG------CA-C----CATCGTCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGA
* *
17345016 TCGGGGGGC----TG--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTT
638 TCGGGGGGCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
17345075 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAAGAGCATTTGAGATT
703 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
17345139 TTATAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
768 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
17345204 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCGTGCCAACAAAAATACAACGA
833 AAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGA
17345269 TC
897 TC
* ** * *
17345271 ACATCTACCTTGTTTGGGGCCAAAAGTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGT-AAA
1 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
*
17345335 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTA
66 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* *
17345400 AGTGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTG
131 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
* * * * *
17345465 CTTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGTATCTCGTCTCTCTGGCCGACGTAGT
196 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* * *
17345530 GCCCG--CA--CGCCCGCCCGCTCGTTTCATCGGTTGTCTAAGGCATACAGAGTTCATTCCTAGT
261 GCCCGCCCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGT
* * * * * *
17345591 CTAAAGTTGA-ATCGGACTGAGGGTTGCGACAGTAGGACCAGACTGAGGGTTACGAGGACAGCAT
326 CT-AAGATCAGACCAGACCGAGGGTT--G-C----GG--CAG-C--A-GGAT-C---GACAGCA-
* * * * * * * *
17345655 CGATAGGACGCAGAAGGGACCCGACCAATCGCTGGCTTGTGCAACCCGCCCCTTTGGCCAGCTGA
372 CG-CA-GA-G--G--GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * * *
17345720 GCGCTCGCACACTCGTTTCATGGGTCGACTTAGGCACATGGAGTTCATTCCCAGTCTAAGCATAC
430 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* ** **
17345785 GAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGAC-G-ACAT--T--TTTC-TT
495 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* * * * * * * *
17345843 CA----C-CGAG--GCA----CCATCACC--AG-AGCATCGTCAGAGAACCTGACTGGC-AGCAT
560 CATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGAACCTGACCGGCGA-CAT
** * * *
17345893 TGGGGTTCCGACGATC------CGGGGGGCCGATGGGTGCGCGCACATGATGTACGATTGGTGCT
624 TGGGGTTCCGACGATCGGGGGGCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
17345952 GGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
689 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
17346017 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
754 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * ** *
17346082 TTTGAAACGATCACAAAATCTTGTACACTTTAAGTTTTCAGCTGAATTTGTTTTGTGCATGCCGA
819 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTTGTGCATGCC-A
17346147 A-AAAAATACAAGGATC
882 ACAAAAATACAAGGATC
* * *
17346163 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAATCGCAAAA
1 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* * *
17346228 ACTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTA
66 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* * ***
17346293 AGGGACCATTGGAAGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTG
131 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
* * * *
17346358 CCTAAACCCACCTACCACCCTATCGATCCACGGCTAGCGCATCTCGTATCTCTGGGCGGCGTAGT
196 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* * *
17346423 ----G----CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGT
261 GCCCGCCCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGT
* * * * * * *
17346480 CTAAGATCAGATCAGACTGAGGGTTGCGGTAGCAGGATTGGCAGCACACAGAGGGGGACCCGGCC
326 CTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACC
* * * **
17346545 GATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGTTCAATGCCCGCACGCTCGTTTCGTGGGTT
391 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
** * * *
17346610 GACTTAGGCATACGTTGTTCTTTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAGGATCGG
456 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * *
17346675 ACCAGACCGAGGGTTGCGACAGCACTTGCTCGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTC
521 ACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
** * * * *
17346740 GTCGGGGCACCATCGCCAGAGCATTACCGGAGAACCTGATCGGTGGCATTGGGATTCCGACGATC
586 ACCGGGGCACCAT---C---G---T--CGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATC
* * *
17346805 -----G-GGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTTT
640 GGGGGGCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
17346864 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAAAGCATTTGAGATTTT
705 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
17346928 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAA
770 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
17346993 AATCTTGTACACTTCAAG-TTTTATGCTGAATTTTGTTGTGCATGCCAACAAAAATACAAGGATC
835 AATCTTGTACACTTCGAGTTTTTA-GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
** ** * *
17347057 ACGTCTACCAAGTTTGGGGCCAAACCTCCTTCCGAAAAAATTTTAAAAAATCTTGAACGGCAAAA
1 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
17347122 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
66 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
*
17347187 AGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
131 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
* * *
17347252 CCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGTATCCCGTCTCTCTGGCCGACGTAGT
196 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* ** *
17347317 GCCCGCCCACCTGTTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGT
261 GCCCGCCCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGT
* * * * ** **
17347382 ATAAGATCAGACCAGACCGAGGGTTGAGACAGCAAGATCGGTAGCACGCAGAGGGGGACCCGGTC
326 CTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACC
* * * *
17347447 GATCCCCGGCTTGCGCATCCCGCCCC-CTAGCCGGCTAAGCACCCGCACGCTTGTTTCGTGGGTT
391 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * *
17347511 CACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCAG
456 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
** * *
17347575 ACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATTTGTTGGTGCCGCATTTTTCTTC
521 ACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * *
17347640 ACCGGGGCACCATCGCCAGAGCATCACCAGAGAACCTGACCGGTGGCATTGGGGTTTCG--G-T-
586 ACCGGGGCACCAT---C---G--T---CGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATC
*** ** * * ** *
17347701 -GTTTGC-GGGGGTTGGGTGGGTGTGCGCACATGACGTGCGGTGGGTGCTACTTCTTGGCCCTTA
640 GGGGGGCGGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
17347764 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTCTTAAAGATCATTTAAGATT
704 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-CTTAAAGAGCATTTGAGATT
*
17347829 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACACTTTTTTCAAATGGTCAC
768 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
*
17347894 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT-CAAACAAAAATACAAGGAT
833 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
17347958 C
898 C
17347959 ACGTCTACCAAGTTTGGGGCCAA
1 ACGTCTACCAAGTTTGGGGCCAA
17347982 CCGATGAAAT
Statistics
Matches: 6264, Mismatches: 753, Indels: 460
0.84 0.10 0.06
Matches are distributed among these distances:
864 137 0.02
865 1 0.00
866 4 0.00
868 2 0.00
869 2 0.00
870 3 0.00
871 3 0.00
872 6 0.00
876 5 0.00
877 1 0.00
878 3 0.00
879 1 0.00
880 2 0.00
881 2 0.00
882 11 0.00
883 615 0.10
884 49 0.01
885 8 0.00
886 1 0.00
887 1 0.00
888 7 0.00
889 66 0.01
890 23 0.00
891 234 0.04
892 193 0.03
893 190 0.03
894 271 0.04
895 121 0.02
896 120 0.02
897 13 0.00
898 67 0.01
899 537 0.09
900 304 0.05
901 202 0.03
902 360 0.06
903 342 0.05
904 282 0.05
905 212 0.03
906 2 0.00
907 5 0.00
908 4 0.00
909 206 0.03
910 5 0.00
911 8 0.00
912 155 0.02
913 47 0.01
914 453 0.07
915 7 0.00
916 4 0.00
917 3 0.00
918 3 0.00
919 1 0.00
920 5 0.00
921 7 0.00
922 2 0.00
923 135 0.02
924 7 0.00
925 22 0.00
926 3 0.00
927 3 0.00
928 1 0.00
929 2 0.00
930 127 0.02
931 84 0.01
932 2 0.00
933 1 0.00
934 4 0.00
935 289 0.05
936 16 0.00
937 235 0.04
938 8 0.00
939 1 0.00
940 1 0.00
941 1 0.00
942 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
GCCCGCCCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGT
CTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACC
GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
ACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
ACCGGGGCACCATCGTCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGCGGGG
GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
Found at i:17344065 original size:11 final size:11
Alignment explanation
Indices: 17344049--17344074 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
17344039 ACCGGGGCAC
17344049 CATCGCCAGAG
1 CATCGCCAGAG
17344060 CATCGCCAGAG
1 CATCGCCAGAG
17344071 CATC
1 CATC
17344075 ATCGGAGAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.38, G:0.23, T:0.12
Consensus pattern (11 bp):
CATCGCCAGAG
Found at i:17346646 original size:26 final size:26
Alignment explanation
Indices: 17346617--17346667 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
17346607 GTTGACTTAG
** * *
17346617 GCATACGTTGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17346643 GCATACGGAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATTCCCAATCTA
17346668 GGATCGGACC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.27, G:0.16, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17347556 original size:26 final size:25
Alignment explanation
Indices: 17347518--17347569 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
17347508 GTTCACTTAG
17347518 GCATACGAGTTCATTCCCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
*
17347543 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
17347569 G
1 G
17347570 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:17349735 original size:26 final size:26
Alignment explanation
Indices: 17349685--17349735 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17349675 TTAGTTTGAT
*
17349685 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
17349711 CTTAGACTGGGAATGATCTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
17349736 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17350787 original size:899 final size:896
Alignment explanation
Indices: 17347979--17351418 Score: 4434
Period size: 899 Copynumber: 3.9 Consensus size: 896
17347969 AGTTTGGGGC
* * * * * * * *
17347979 CAACCGATGAAATGAGCGTGCGGGCGCTCAACCGGCCAGAAGGGCGAGATGTGCAAGTCGGGGAT
1 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAG-AGGGGGGGATGCGCAAGTCGAGGAT
* * * * * * ** * * *
17348044 CGGCCGAGTCCCCCTCTGCGTGCTACCGATCCTACTGCCGCAATGTTCGATC-CGATCTAATCTT
65 CGGACGGGTCCCCCTCTGAGTGCTA-CGATCCTGCTACCGTAACCTTCGGTCTAG-TCTGATCTT
* * *** * *
17348108 AGACTGAGAATGAACTCTGTATGCCTAAGCCAACCAACGAAACGAGCAGGCAAACGGGTGGGCGG
128 AGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCAG
* * * * * *
17348173 GCACTACGTCGACCAGAGAGACGGGATACGTAAGCCATGGATCGATAGGG-GGTAGGTGGGTTTT
193 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTG
* *
17348237 GGCACATCTTCATATTTATGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
258 GGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
17348302 CTTAAGTCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAA
323 CTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* ** * * *
17348367 CTTTTTGCGGTTTAGGATTTTTTAAAATATTTTCGGAAGGATTTTTGGCCCCAAACTAGGTAGAC
388 CTTTTTGTGGTTCGGGATTTTTTAAAAT-TTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
17348432 GTGATCCTTGTATTTTTTTTGGCATGCACAACAAAATTCAGCTTAAAACTCGAAGTGTACAAGAT
452 GTGATCTTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-
* *
17348497 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTG
516 TTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCTG
*
17348562 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAA
580 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * ** * * *
17348627 TATATGGACCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGACCCCCCGATTGT
645 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGCCCCCCCGATCGC
* *** *
17348692 CGAAACCCCAATGCTACCGGTCA-G-T-T-------T-CTCCGGCGATGGTGCCCC-AGCAAAGA
710 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGA-CGAAGA
*** * * * *
17348745 AAAATGGGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCGGTCCGGTCTGAT
774 AAAATACAGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAGTCTGAT
17348810 CTTAGACT--G---G-A----A-ATG---A-AC------T----TCGTATGCCTAAGT
839 CTTAGACTGGGAATGAACTCCACATGCTTAGACTGGGAATGAACTCGTATGCCTAAGT
* *
17348843 CAACCCATAAAACGAGCATGCGGGCGCTCAGCC-AGCCAGAGGGGCGGGATGCGCAAGTC-AGGG
1 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGA-CCAGAGGGG-GGGATGCGCAAGTCGA-GG
* * * * **
17348906 ATCGGACAGGTCACCCTCCGAGTGCTACTGATCCTACTACCGTAACCTTCGGTCCGGTCTGATCT
63 ATCGGACGGGTCCCCCTCTGAGTGCTAC-GATCCTGCTACCGTAACCTTCGGTCTAGTCTGATCT
* * * *
17348971 TAGACTGGGAATGAACTTTGTATGCCTAAGCCAGCCGACGAAACGAGCGGGTGGGCGGGCGGGCA
127 TAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCA
* * * * * *
17349036 GGCACGACGCCGGTCAGAGAGACGGGATGCGCAAGTCATGGATCGGTAGGGTCGTAGGTGGGTTT
192 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
17349101 GGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
257 GGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
17349166 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAA
322 CCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* * * * * * *
17349231 ACTTTTTGCGGTTCAGGATTTTTTACAATATTTCT-GACGGAGATTTGG-CCCAAACTAGGTAGA
387 ACTTTTTGTGGTTCGGGATTTTTTAAAAT-TTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
17349294 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAGAAGA
451 CGTGATCTTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
17349359 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGGAAACCT
516 -TTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCT
*
17349424 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGTATAGGGGGCCA
579 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*
17349489 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTCCACACACCCCCCGGCCCCCCCGATC
644 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCC-GCCCCCCCGATC
* * * * * *
17349554 GTCGAAACCCCAACGTCGTCGGTCAGGTTCTCCGACGATGGTCCGGTGATGGTGCCCCGACGAAG
708 GCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAG
* * ** *
17349619 AAAAATACAGCACCAACACATGCCTGAGCCCAGCATGTGCTACCGCGACCCTCGGTTTAGTTTGA
773 AAAAATACAGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAGTCTGA
* ** * *
17349684 TCTTAGACTGGGATTGAACTCCGTATGCTTAGACTGGGAATGATCTCTGTATACCTAAGT
838 TCTTAGACTGGGAATGAACTCCACATGCTTAGACTGGGAATGAACTC-GTATGCCTAAGT
* *
17349744 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGATGCGCAAGTCGAGGATC
1 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGGGGATGCGCAAGTCGAGGATC
* * * * *
17349809 AGCCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCTTCGGTCTGATTC-GATCTTA
66 GGACGGGTCCCCCTCTGAGTGCTA-CGATCCTGCTACCGTAACCTTCGGTCT-AGTCTGATCTTA
* * * ** **
17349873 CATTGGTAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGAACGGGCGGGTGGG
129 GACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCAGG
* **
17349938 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTAATAGGGTGGTAGGTGGGTTTGG
194 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTGG
**
17350003 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATATCTTGTAAATTCATACAATGGTCCC
259 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
17350068 TTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
324 TTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
17350133 TTTTTGTGGTTCGGGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
389 TTTTTGTGGTTCGGGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* *
17350198 GATCTTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTTTACAAGA-TT
454 GATCTTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
17350262 ATGACCATTTGAAAAAAATGTGCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCTGTAA
519 GTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCTGTAA
17350327 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
583 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * *
17350392 AAGGGCCAAGTACCAGCACCCATCACACATCATGTGCATACACCCCCCGACCCCCTGATCGCCGG
648 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGCCCCCCCGATCGCCGG
* * * * *
17350457 AACCCAAATGCCGTCGGTCAAGTTCTCCGACGATGCTCTGGCGATAGTGCCCCGATGAAGAAAAA
713 AACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAA
* * * * * *
17350522 TGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTA
778 TACAGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAGTCTGATCTTA
* * *
17350587 GACTGGGAATGAACTTCACATGCTTAGATTGGGAATGAACTACGAATGCCTAAGT
843 GACTGGGAATGAACTCCACATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGT
* * * * * **
17350642 CAACCCACGAAACGAACGTACGAGCGCTCAGCCGACTAGAGGGGTGGGATGCATAAGTCGAGGAT
1 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGG-GGGATGCGCAAGTCGAGGAT
* * * *
17350707 TGGTCGGGTCCCCCTCTGTGTGCTATCGATCCTGCTACCGTAACCCTCGGTCTAGTCTGATCTTA
65 CGGACGGGTCCCCCTCTGAGTGCTA-CGATCCTGCTACCGTAACCTTCGGTCTAGTCTGATCTTA
* ** ** *
17350772 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCACACGGGTAGGCAGGCAGG
129 GACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCAGG
* * * * *
17350837 CACTATGCCGACCAGAGAGTCGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAG
194 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTGG
* * *
17350902 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTGTCCT
259 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
**
17350967 TTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCCAAAC
324 TTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * * *
17351032 TTTTTGTGGTTCGGCATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAAACA
389 TTTTTGTGGTTCGGGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
17351097 TGATCTTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAGAAACTCGAAGTGTACAAGATT
453 TGATCTTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-T
* * * *
17351162 TTGTGACCATTTGAAAAAAGTGTCCTCATTTCGGACACTTTAATGGCTGCTGGTAGCAAACCTGT
517 TTGTGACCATTTGAAAAAAGTGTCC-CATTTCAGACACTTTAATGGCTACTGGCAGGAAACCTGT
* *
17351227 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGTGATAGGGGGCCAAT
581 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
17351292 ATAAGGGCCAAGTACCAGCCCCCATCGCACATCCTGTGCGCACACACCCCCCCGCCCGCCCCGAT
646 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT--GCACACA-CCCCCCGCCC-CCCCGAT
* * ** *
17351357 CACTGGAACCCCAATGCCG-CTGGTCAGGTTCTCCGGTGATGCTCCAGCGATGGTGCCCCGAC
707 CGCCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAC
17351419 CCCCCCGAGC
Statistics
Matches: 2250, Mismatches: 263, Indels: 84
0.87 0.10 0.03
Matches are distributed among these distances:
863 255 0.11
864 231 0.10
865 168 0.07
866 1 0.00
867 1 0.00
874 1 0.00
875 82 0.04
876 1 0.00
877 1 0.00
880 1 0.00
881 1 0.00
886 3 0.00
889 1 0.00
890 2 0.00
896 1 0.00
898 209 0.09
899 510 0.23
900 424 0.19
901 132 0.06
902 153 0.07
904 6 0.00
905 10 0.00
906 56 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGGGGATGCGCAAGTCGAGGATC
GGACGGGTCCCCCTCTGAGTGCTACGATCCTGCTACCGTAACCTTCGGTCTAGTCTGATCTTAGA
CTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCAGGCA
CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGC
ACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
TTTGTGGTTCGGGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
TCTTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTGT
GACCATTTGAAAAAAGTGTCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGCCCCCCCGATCGCCGGAAC
CCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATAC
AGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGAC
TGGGAATGAACTCCACATGCTTAGACTGGGAATGAACTCGTATGCCTAAGT
Found at i:17351470 original size:116 final size:118
Alignment explanation
Indices: 17351312--17351532 Score: 281
Period size: 116 Copynumber: 1.9 Consensus size: 118
17351302 AGTACCAGCC
** *
17351312 CCCATCGCACATCCTGTGCGCACACACCCCCCCGCCCGCCCCGATCACT-GGAACCCCAATGCCG
1 CCCATCGCACATCCTGTGCGCACACACCCCCCCGCCCGCCCCGATC-CTCAAAACCCCAACGCCG
*
17351376 -CTGGTCAGGTTCTCCGGTGATGCTCC-AGCGATGGTGCCCCGACCCCCCCGAGCA
65 TC-GGTCAGGTTCTCCGATGATGCTCCGA-CGATGGTGCCCCGACCCCCCCGAGCA
* * ** * *
17351430 CCCATCGCACATCTTGTGTGCACAC-CCCCCTGGCCC-CCCCGATCGTCAAAACCCCAACGTCGT
1 CCCATCGCACATCCTGTGCGCACACACCCCCCCGCCCGCCCCGATCCTCAAAACCCCAACGCCGT
*
17351493 CGGTCAGGTTCTCCGATGATGCTCCGATGATGGTGCCCCG
66 CGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCG
17351533 GTGAAGAAAA
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
115 1 0.01
116 54 0.61
117 11 0.12
118 23 0.26
ACGTcount: A:0.16, C:0.44, G:0.23, T:0.17
Consensus pattern (118 bp):
CCCATCGCACATCCTGTGCGCACACACCCCCCCGCCCGCCCCGATCCTCAAAACCCCAACGCCGT
CGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACCCCCCCGAGCA
Found at i:17351656 original size:26 final size:26
Alignment explanation
Indices: 17351605--17351657 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17351595 CTGGTCTGAT
*
17351605 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17351631 CTTAGACTGGGAAT-AAGCTCCGTATG
1 CTTAGACTGGGAATGAA-CTCCATATG
17351657 C
1 C
17351658 CTAAATCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17353565 original size:26 final size:26
Alignment explanation
Indices: 17353536--17353588 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17353526 CTGGTCCGAT
*
17353536 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
* *
17353562 CTTAGACCGGGAATTAGCTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
17353588 C
1 C
17353589 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:17354478 original size:26 final size:26
Alignment explanation
Indices: 17354427--17354479 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17354417 CCGGTCCGAT
* *
17354427 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17354453 CTTAGACTGGGATTGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17354479 C
1 C
17354480 CTACGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17354785 original size:159 final size:158
Alignment explanation
Indices: 17354453--17354807 Score: 415
Period size: 159 Copynumber: 2.2 Consensus size: 158
17354443 ACTTCGTATG
* * * * ** *
17354453 CTTAGACTGGGATTGAACTCCATATGCCTACGTCAACCCAAGAAATGAATGTGTGGGTGCTCAGC
1 CTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCAAGAAATGAACATGCGGGTGCTCAGC
* * * *
17354518 TAGCCAGAGGGGCAGGATGCGCAACCGGGGATCGGCCGGGTCCCCCTATGCGTGCTGCCGATCCT
66 TAGCCAGAGGGGCAGGATGCGCAACCAGAGATCGACCGGGTCCCCCTATACGTGCTGCCGATCCT
* * *
17354583 ATTGCCACAACCTTCAATCTGGTCCGAT
131 ACTACCACAACCCTCAATCTGGTCCGAT
* * * * *
17354611 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAATGAGCATGCGGGTGCTCAGT
1 CTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCAAGAAATGAACATGCGGGTGCTCAGC
* * * *
17354676 TGGCCAGAGGGGC-GAGATGCGTAAGCCAGAGATCGACCGGGTCCCCCTCTACGTGCTGTCGATC
66 TAGCCAGAGGGGCAG-GATGCGCAA-CCAGAGATCGACCGGGTCCCCCTATACGTGCTGCCGATC
* ** *
17354740 CTACTACCGCAACCCTCGGTCTGGTCTGAT
129 CTACTACCACAACCCTCAATCTGGTCCGAT
* * *
17354770 CTTATACTGGAAATGAACTCTGTATGCCTAAGCCAACC
1 CTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACC
17354808 GACGAAACGA
Statistics
Matches: 166, Mismatches: 29, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
157 1 0.01
158 75 0.45
159 90 0.54
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (158 bp):
CTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCAAGAAATGAACATGCGGGTGCTCAGC
TAGCCAGAGGGGCAGGATGCGCAACCAGAGATCGACCGGGTCCCCCTATACGTGCTGCCGATCCT
ACTACCACAACCCTCAATCTGGTCCGAT
Found at i:17356431 original size:26 final size:26
Alignment explanation
Indices: 17356392--17356444 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17356382 CTGGTCTGAT
*
17356392 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17356418 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17356444 C
1 C
17356445 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17357330 original size:26 final size:26
Alignment explanation
Indices: 17357301--17357353 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17357291 CTGGTCCGAT
*
17357301 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
17357327 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
17357353 C
1 C
17357354 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:17358238 original size:26 final size:26
Alignment explanation
Indices: 17358209--17358261 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17358199 CTGGTCCGAT
*
17358209 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
17358235 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
17358261 C
1 C
17358262 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:17358737 original size:906 final size:901
Alignment explanation
Indices: 17354611--17361049 Score: 8015
Period size: 908 Copynumber: 7.2 Consensus size: 901
17354601 CTGGTCCGAT
* * * *
17354611 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAATGAGCATGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * * * *
17354676 TGGCCAGAGGGGCGAGATGCGTAAGCCAGAGATCGACCGGGTCCCCCTCTACGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCAGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
17354741 TACTACCGCAACCCTCGGTCTGGTCTGATCTTATACTGGAAATGAACTCTGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
17354806 CCGACGAAACGAGCGGACGGGCAGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
196 CCGACGAAACGACCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
17354871 TGGATCGCTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCAATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
17354936 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACGTGATGTTTCATGGCAAGACGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * ** *
17355001 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAACTTTTTTCAG
391 CGTTTTCTATTTTTCACGATTTTGGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCGG
** * * *
17355066 AAGGAGTTTTCACCCCAAACTTGGTAGACCTGATCCTTGTATATTTGTTTGGCATGCACAAAAAC
455 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG-TTGGCATGCACAAAAAA
*
17355131 ATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
519 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * * * *
17355196 ACACTTTAATGGCCATTTGCAGCAAACCTGTAAAATGTCAAATTCTCTTTAAGGGGGTGTAAGTT
584 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* ** *
17355261 CTCGTGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCATAGATCA
649 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
*
17355326 TGTGCGCACACCCCCCTCCGGCCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCC
714 TGTGCGCACACCCCCCT-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * * *
17355391 GATGATGCTCTGTCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACAGGCTCGAGCCCAG
778 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * *
17355456 CATGTGCTGCCGCAACCCTCGGTCCAGT-CAATCTTAGACTGAGAATAAACTCCGTATG
843 CATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
17355514 CTTAGACTGGGAATGAACTCTGTAAGCCTAAGTTAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * ** * **
17355579 TGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTATGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCAGGTCCCCCTCTGCGTGCTGCCGATCC
* *** ** *
17355644 TGTTGCTTTAACCCTCGGTCTGGTCTAATTTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
17355709 CCGACGAAATGAGCAGGCAGGCGGGTGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
196 CCGACGAAACGA-C---CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
**
17355774 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG-AGCATCTTCATATTTCTGTGTGCCAATGCC
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA-CATCTTCATATTTCTGCATGCCAATGCC
17355838 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** * *
17355903 CGACTCATTTTCTATTTTTCATGATTTTCAAAAATTTTTGCGGTTCGGGATTTTTTAAAATTTTT
386 CGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * *
17355968 TTGAAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAA
451 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
17356033 AAAAATCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
17356098 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
17356163 GTTCTTGAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
17356228 TCATGTGCGCACACCTCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
711 TCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * *
17356292 CCGGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGACACCAACACATGCCCGAGCCC
776 CCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * * *
17356357 AGGATGTGCTACCGTAACCCTCTGTCTGGTCTGATCTTAGACTGTGAATGAACTCCGTATG
841 AGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
17356418 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * * *
17356483 CGGCCAGAGAGGCAGGATGCGCAAGCC-GAGGATCGATC-GGGCCCCTCTCTGTGTGCTGGCGAT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCAG-GGATCGACCAGGTCCCC-CTCTGCGTGCTGCCGAT
** ** * * * *
17356546 CCTGCTGCCATAACCCTCGGTCCAGTCTGATCTTAGACTGAGAATGAACCCCGTATGCGTAAGCC
129 CCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
** * * * * *
17356611 AACCGATAAAATGAGCGGGCGGGTGGGCGGGCGAGCGGGCACTACACCGACCAGAGAGATGGGAT
194 AACCGACGAAACGA-C---C----GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
17356676 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
251 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
* * * *
17356741 ATGCCATTTTTGTGGTTTGTAAATTCAAACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGG
316 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * *
17356806 CAAGAAGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGTATTTTTTAAAA
381 CAAGACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTACGGTTCGGGATTTTTTAAAA
* * *
17356871 TTTCTTT-GGAAGGAGTTTTGGCTCCAAACTTAGTAGACGTGATCCTTGTATTTTTGTTGGTATG
446 TTT-TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
*
17356935 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCTTTTGAAAAAAGTGTCC
510 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
17357000 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGG
575 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * *
17357065 GTGTGAGTTCTCGAGGTTTGATTAGAGATAGGGGGCCAATATAAGGGCCAAGTACCTGCACCCAT
640 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * *
17357130 CACACATCATGTGTGCACACCCCCCTCGGCCCCCCCGATCATCGAAACCCCAATGCCGCCGGTTA
705 CGCACATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCA
* * * *
17357195 GGTTTTCCGACGATGCACTGGCAATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
770 GGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
* *
17357260 GAGCCCAGCATGTGCTACCGCAACTCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTA
835 GAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
17357325 TG
900 TG
* * * *
17357327 CTTAGACTGGGAATCAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * * * * * *
17357392 C-GCCATAAGGGCAGGATGCGCAAG-CTGAGGATCGACCGGGTCCTCCTTTACGTGCTGCTGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCAG-GGATCGACCAGGTCCCCCTCTGCGTGCTGCCGATC
** * * ** * * * * *
17357455 CTGCCACCGTAACCCTCGATCCAGTTCGATCTTAG-CTTGGAAATGAACTTCATATGCATAAGCC
130 CTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCC
* * * * * * * *
17357519 AACCGACAAAACGAGCGGGTGGACGGGC-GGCGGGAATTACGTCGGCCAAAGAAACGGGATGCGT
194 AACCGACGAAACGA-C-CG-GG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* *
17357583 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
255 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * *
17357648 CATTTTTATGGCTTGTAAATTCTTACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCAAGGCAAG
320 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
*
17357713 ACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
385 ACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTT
* * *
17357778 TTTCGAAAGGAGTTTTGGCCGCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTTGGCATGCA
449 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA--TTTTTGTTGGCATGCA
* * *
17357843 TAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCC
512 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
17357908 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGT
577 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
17357973 GTGAGTTCTCGAGGATTGATTAGGGATAGGGGGCCAATATAAGGGCCAATGTACCAGCACCCATC
642 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA-GTACCAGCACCCATC
* * * * *
17358038 GCACATCATGTGCGCACACCCCCCCTCGACCCCCCCGATCGACAGAACCCTAATGTCGCCGGTCA
706 GCACATCATGTGCGCACA-CCCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCA
* * * ** * *
17358103 GGTTCTCCGACGACGCTCCGACGATGGTGCCCTGGTGATGAAAAATGTGGCACCAGCACATGCCC
770 GGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
* * * *
17358168 AAGCCCAGCATGTACTATCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTA
835 GAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
17358233 TG
900 TG
*
17358235 CTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * *
17358300 CGACCAGAGGGGCGGGTTGCGCAAACCAGGGATC-AGCCAGGTCCCCCTCTGTGTGCTGCCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGA-CCAGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * * * * *
17358364 ATACTACCACAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATAAAATCCATATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
17358429 ACCAACGAAACGACCGGGCGGGCGGGCGGGCATTACACCGGCCAGAGAGACGGGATGCGCAAGCC
195 ACCGACGAAACGACCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
*
17358494 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
17358559 TTATGGCTTGTATATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCAAGGCAAGACGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
*
17358624 TCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTACGGTTCTGGATTTTTTAAAATTTTTTCGG
390 TCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
* * * * *
17358689 AAGGAGTTTTGGCCACAAACTTGGTAGACATGATCCTTGGTTTTTTTTTTTTGGCATGCA-TAAA
455 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT-G--TATTTTTGTTGGCATGCACAAAA
*
17358753 AAATTCAGCTAAAAACTCGAAGTGAACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
17358818 AGACACTTTAATGGCTACTGGTAGCAAAACTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT-AG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* ** * *
17358882 TCTCTCGAGGTTTGATAAGGGATA-CAGCCCAAAATAA-GGCCAA-TACCAGCACCCATCAG-AC
647 T-TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-GCAC
* *
17358943 ATCATG-GC-CACACCCCCCTC-GACCCCCCGATCGTCGGAA-CCCAATG-CGTCGGTCA-GTTC
710 ATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * *
17359002 TCCGACGA-GCTCCGACGATCGTGCCCCG-TGAAGAAAAATGTGGCACCCGCACATG-CCGAG-C
775 TCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * *
17359063 CAGCATGTGCTACCGTAACCCTCGGTCCGATCC-ATCTTAGACT-GGAATGAACATCCATATG
840 CAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC-TCCGTATG
* * * * *
17359124 CTTTA-ACTTGGGAATGAACTCCGTATGCCT-ATTCAAAAACCATGAAATGAGCGTGC-GGCGCT
1 C-TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTC--AACCCACGAAACGAGCGTGCGGGTGCT
* * * *
17359186 CAACTGGCCAGA---GC-GGATGCACAAGCC--GGATTC-A--A----CCCCT-T-C--GCTGCT
62 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGA-TCGACCAGGTCCCCCTCTGCGTGCTGCC
* * *
17359234 GAT-C-GACT----TAA--CTCGATC---T-CGATCCTAGA-T--G-A--AACTCCGTATGCCTA
126 GATCCTG-CTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * **
17359281 AG-CAACC-ACGAAATGA--GCG-GGGCGGGC-GGCTCTACG-TTGCCAGAGAGACGGGATGCGC
190 AGCCAACCGACGAAACGACCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * * * * *
17359339 AAGCCGGGGATCGATTGGTTGGTAGCTGGATTTAGGCACATCTTCATATTTTTGC-TGCTAATG-
255 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
17359402 CATTTTTA-GGCTTGTAAA-TCATAAAATGGT-CCTTAAGCCTTCACATGAAGTTTCATGGCAA-
320 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ****
17359463 AC-ACTCGTTTTCTA--TTTCAGCTGA-TTTGTAAACTTTTTACGGTTCAGGGATTGGGCAAAA-
385 ACGACTCGTTTTCTATTTTTCA-C-GATTTTGGAAACTTTTTACGGTTC-GGGATTTTTTAAAAT
* *
17359523 TTTTT-GAGAAGGA-TTTTGGTCCCAAA-TTGG-A-AC---ATCCTTGTATTTTTGTT-GCAAGC
447 TTTTTCG-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* *
17359579 ACAAGAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCC
511 ACAA-AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
17359644 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAGGCTCTTTAAGGGG
575 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
17359709 GTGTGAGTTCTCGAGGTTTGATGAGGGATGGGGGGCCAATATAAGTGCCAAGTACCAGCACCCAT
640 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * *
17359774 TGCACATCATGTGCGCACACCCCCC-CGGCCCCCCCGATCGCCAGAACCCCAATGCCACCGGTCA
705 CGCACATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCA
* * * *
17359838 AGTTCTCCGACGATGCTCCGGCAATGGTGCCGCGACAAAGAAAAATGCGGCACCAGCACAT-CCC
770 GGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
* *
17359902 GAGCCCAGCATGTGCTGCCACAA-CC-C--T-C-G---G-TC-----C-------G-A-TCCG-A
835 GAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
17359942 T-
900 TG
* * * ** *
17359943 CTTAGACTGTGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGATCATGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
** * * * * * *
17360008 CTCCCAGAGGGGCGGGATACACAAGTCGGGGATTGGCCAGGTCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCAGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
17360073 TGCTGCCGCAACCCTTGGTCTAGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** *
17360138 CCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCTACCAGAGAGACGAGATGCGCAAGCCG
196 CCGACGAAACGACCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * ***
17360203 CGGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTTATATTTCTATGTGCCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
17360268 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * *
17360333 CGTTTTTTATTTTTCACGATTTTTGAAACATTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAA
391 CGTTTTCTATTTTTCACGATTTTGGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* *
17360398 AGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAAT
456 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
17360463 TCAGCTACAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAC
521 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * *
17360528 ACTTTAATTGCTACTGACAGCAATCCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTTCT
586 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
17360593 CGAGG-TT--T----GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
651 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* ** * * * * *
17360651 TGTGCACACCCCCCTCGGGGCCCCCGATCGTCGGAACCCCAATGTCGTCGATAAGGTTCTCCGGC
716 TGCGCACACCCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* * *
17360716 GATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGGCCAGCAT
781 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * *
17360781 GTGCTGCCACAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTTCGTATG
846 GTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
17360837 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGCGCGGGTGCTCATC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * * *
17360902 CGGCCAGAGGGGCGTGATGCACAAGCCAGGGATCGACCAGGTCCCCTTCTGCGTGTTGCTGTTCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCAGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
17360967 TGCTGCTGCAACCCTCAGTCTGATTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
17361032 TCGACGAAATGAGCGGGC
196 CCGACGAAACGACCGGGC
17361050 TTGTATTTTT
Statistics
Matches: 4817, Mismatches: 561, Indels: 325
0.84 0.10 0.06
Matches are distributed among these distances:
817 15 0.00
818 38 0.01
819 6 0.00
820 2 0.00
821 5 0.00
822 11 0.00
823 2 0.00
824 4 0.00
826 1 0.00
830 6 0.00
831 7 0.00
832 10 0.00
833 143 0.03
834 21 0.00
835 17 0.00
836 22 0.00
837 3 0.00
838 28 0.01
839 11 0.00
840 12 0.00
841 34 0.01
842 49 0.01
843 52 0.01
844 19 0.00
845 36 0.01
846 12 0.00
847 9 0.00
848 9 0.00
849 8 0.00
850 68 0.01
851 23 0.00
852 13 0.00
853 9 0.00
855 10 0.00
856 13 0.00
857 23 0.00
858 64 0.01
859 8 0.00
860 9 0.00
861 10 0.00
862 12 0.00
863 38 0.01
864 3 0.00
865 23 0.00
866 88 0.02
867 109 0.02
868 29 0.01
869 5 0.00
870 4 0.00
872 3 0.00
873 151 0.03
874 18 0.00
877 1 0.00
878 7 0.00
882 1 0.00
883 1 0.00
884 3 0.00
885 3 0.00
886 10 0.00
887 2 0.00
888 9 0.00
889 23 0.00
890 68 0.01
891 22 0.00
892 28 0.01
893 20 0.00
894 194 0.04
895 8 0.00
896 6 0.00
897 15 0.00
898 8 0.00
899 4 0.00
900 2 0.00
901 22 0.00
902 2 0.00
903 524 0.11
904 265 0.06
905 401 0.08
906 469 0.10
907 248 0.05
908 797 0.17
909 326 0.07
910 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (901 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCAGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGACCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACGATTTTGGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:17360847 original size:26 final size:26
Alignment explanation
Indices: 17360811--17360863 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17360801 CCAGTCCAAT
*
17360811 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17360837 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17360863 C
1 C
17360864 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17361468 original size:26 final size:26
Alignment explanation
Indices: 17361430--17361482 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17361420 CCAGTCTGAT
17361430 CTTAGACTAGGAAAGAACTCCGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
* * *
17361456 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
17361482 C
1 C
17361483 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCCGTATG
Found at i:17362201 original size:25 final size:26
Alignment explanation
Indices: 17362173--17362221 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17362163 CCGGTCCGAT
17362173 CTTAGACT-GGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
17362198 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
17362222 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:17364002 original size:26 final size:26
Alignment explanation
Indices: 17363966--17364018 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17363956 CCAATCCTAT
* *
17363966 CTTAGACTGGGAATTAACTGCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17363992 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17364018 C
1 C
17364019 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17364281 original size:888 final size:888
Alignment explanation
Indices: 17361456--17364942 Score: 4503
Period size: 888 Copynumber: 3.9 Consensus size: 888
17361446 ACTCCGTATG
* ** * *
17361456 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTTAACCAACAAAACGAGCGGGCGGACGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GG-CGGGC---
* * *
17361521 TGGGCACTACTCCAGCCAGAGAGACGGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTTGGT
59 -GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGT
* *
17361586 TTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
123 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
17361651 TCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAATACGACTCGTTTTCTATTTTTCATGATTTTCG
188 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * * * *
17361716 AATCTTTTTATGGTTCAAGATTTTTTTGAAATTTTTTCGGAAGGGGTTTTGGCCCCAAACTTGGT
253 AAACTTTTTACGGTTCGAGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGT
* *
17361781 AGACGTGATCCTTGTATTTATGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACA
317 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
17361846 TGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
382 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAA
*
17361911 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGTGAGATAAGGGG
447 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG-GGGAT-AGGGG
* *
17361976 CCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCA--TGTGCACACCCCCCGGCCCCCCCG
510 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA-CCCCCGGCCCCCCTG
* *
17362039 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGGTGATGGTGCCCCGACG
574 ATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA--CT-C-GTGATGGTGCCCCGACG
* * * *
17362104 AAGAAAAATGC-ACCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGT
635 AAGAAAAATACGA-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGT
*
17362168 CCGATCTTAGACT-GGAATGAACTCCGTAAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
699 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * ** * * *
17362232 AACCAACGAAATGAGCGTGCTGGCGCTCAG-CCGCCAGAGGGGTGACATGCA-TAGGCTGGGATT
764 AACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGTGGGATGCACAAGCCTGGGATC
* * * * * *
17362295 GATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTATCGCAACCGTCGGTAT-GGTTCAAT
829 GGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGGT-TCGGTCCAAT
* *
17362355 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAATCGAGCAGGCGGGCGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-A-GCGGGCGGGC--G
* ** * * * *
17362420 CAGGCACTACGCTGGCCAGAGAGATAGGACGCGCAGGCCGTGGATTGATAGGGTGGTAGGTGGGT
60 --GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGT
* * **
17362485 TTAGGCACATCTTCATATTTCTACATGCCAATGCTATTTTTATGGCTTGTAAATTCATATGATGG
123 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
17362550 TCCCGTAAGCCTACACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTTATGATTTTTG
188 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * *
17362615 AAACTTTTTGCGGTTCGGGATTTTTTCAAATTTTTTCGGAAGGAGTTTT-GACCCCAAACTTGGT
253 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAG-CCCCAAACTTGGT
*
17362679 AGACGTGATCCTTGTAATTTTTTGTTGGCATGCATAAAAAAATTCAGCTTAAAAACTCGAAGTGT
317 AGACGTGATCCTTGT-A-TTTTTGTTGGCATGCACAAAAAAATTCAGC-TAAAAACTCGAAGTGT
* * *
17362744 ACAGAGTTTTTGT-ACCACTTGAAAAAA-TGTCCCCATTTCAGGCACTTTAATGGCTACTTAGGC
379 ACA-AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC-TA-GC
* * * *
17362807 AACCAAACCTGTAAAATCTCAAATGCTCTTTAA-AGGGTGTAAGTTCTTGAGGTTTGAT--GGAT
441 -AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGGGGAT
*
17362869 AGGGGCCAAGTAATTAAGGAGCCAAGTACCAGCAACCCATCTCACATCATGTGTGCACACCCCCG
505 AGGGGCCAA-T-A-TAAGG-GCCAAGTACCAGC-ACCCATCGCACATCATGTGTGCACACCCCCG
* * *
17362934 GCCCCTTCC-GATCATCGGAACCCCTAATGCCGCCGGTCAGGTTCTCCGACGATCCTCCGACGAT
565 GCCCC--CCTGATCACCGGAACCCC-AATGCCGCCGGTCAGGTTCTCCGGCGA--CT-CG-TGAT
* * * * *
17362998 GGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCACAGCATGTGCAGCCGTAACC
623 GGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * * * * **
17363063 CTCGATCTGGTCCGATCTTAGACTAGGAATGAACTCTGTATGCTCAGATTGGGAATGAACTCCAC
688 CTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * *
17363128 ATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAATCGGCCAGAGGGGT-GGATGCGCA
753 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGTGGGATGCACA
* *
17363192 AGCTTGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACTGCAACCCTCGG-TCTG
818 AGCCTGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGGTTC-G
17363256 GTCCAAT
882 GTCCAAT
* * *
17363263 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAACGATCGGGCAGGCGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
* *
17363328 ACGCCGGCCAGAGAGACGGGATCCACAAGCCGTGGATCGATAGGGTGGTAGG-TGAGTTTAGGCA
66 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTG-GTTTAGGCA
* ** * *
17363392 CATCTTCATATTTTTGCATGCCAAAT-CCATTTTTATGTTTTTTAAATTCATAGAATGGTCCCTT
130 CATCTTCATATTTCTGCATGCC-AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
*
17363456 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
194 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
* * * ** * *
17363521 TTTGCAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA-TTTTATTCCAAAACTTTGTAGACGTG
259 TTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTG
*
17363585 ATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
324 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
17363650 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAA
389 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAA
*
17363715 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGCGGGATAGGTGGCCAATAT
454 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG-GGGATAGG-GGCCAATAT
* * * *
17363780 AAGGGCCAAGTACCAGCACCGATCACAGATCATGTATGCACACCCTACCCGGCCCCCCTGATCAC
517 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA-CC--CCCGGCCCCCCTGATCAC
* * *
17363845 CGAAACCCCAATGCCGCCGATCAGGTTCTCCGGCGA-T-G-GATGGTG-CCCGGCGAAGAAAAAT
579 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGACTCGTGATGGTGCCCCGACGAAGAAAAAT
* * ** *
17363906 ACGACACCAGCACATGCCCCAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCTATCTTAG
644 ACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAG
* *
17363971 ACTGGGAATTAACTGCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
709 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * * *
17364036 ACGAGTGTAAC-GGCGCTCAGTCGGCCGGAGGGGTGGGATGCACAAGCCGGGGATCGGCCAGGTC
774 ACGAGCGT-GCGGGCGCTCAGTCGGCCAGAGGGGTGGGATGCACAAGCCTGGGATCGGTCGGGTC
* * *
17364100 CCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTTCGATCCGAT
838 CCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGGTTCGGTCCAAT
* *
17364151 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
* *
17364216 ACGCTGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCAC
66 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCAC
** **
17364281 ATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCAGAA
131 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
17364346 GCCTTCACGTGAAGTTTCATGCCAAGACAACTCGTTTTCTATTTTTCATGATTTTTTAAACTTTT
196 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
* * * * *
17364411 TATGGTTTGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA-TATAGTAGACGTGA
261 TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACT-TGGTAGACGTGA
* *
17364475 TCCTTGTATCTTTT-TTGGCATGCACAAAAAACTTCAGCTAAAAACTCGATGTGTACAAGATTTT
325 TCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * * * *
17364539 GTGACCATTTGAAAAAAGTGTCCACATTTTAGACACTTTAATGTCTACTGGCGGCAAACCTGTAA
389 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAA
* **
17364604 AGTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGGGAGGGATAGGGGGCCAATAT
454 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG-GGGATA-GGGGCCAATAT
* * * **
17364669 AAGGGCCACGTACCAGCACCCGTCGCACATCATGTGCGCACACCTCCCGG-CCCCCTGATCGTCG
517 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACC-CCCGGCCCCCCTGATCACCG
* * * * * * *
17364733 GAGCCCCAATGCCACTGGTCAGGTTCTCCGGTGATGGTCCGGTGATGGTGACCCGACAAAGAAAA
581 GAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA--CT-C-GTGATGGTGCCCCGACGAAGAAAA
* * * *
17364798 ATACGGCACCAGCACATG-TCGAGCCCAACATGTGCTGTCGCAACCCTCGATCCGGTCCGATCTT
642 ATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCCGATCTT
* *
17364862 AGACTGTGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA-CCAGC
707 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-C
*
17364926 GAAACGAGCGGGCGGGC
771 GAAACGAGCGTGCGGGC
17364943 AGTCGGGTGG
Statistics
Matches: 2269, Mismatches: 255, Indels: 134
0.85 0.10 0.05
Matches are distributed among these distances:
886 40 0.02
887 162 0.07
888 340 0.15
889 233 0.10
890 7 0.00
892 6 0.00
893 113 0.05
894 81 0.04
895 75 0.03
896 52 0.02
897 71 0.03
898 73 0.03
899 270 0.12
900 266 0.12
901 43 0.02
902 46 0.02
903 46 0.02
904 19 0.01
905 23 0.01
906 115 0.05
907 75 0.03
908 113 0.05
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCAC
ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGAT
CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGGGGATAGGGGCCAATATAAGG
GCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCGGCCCCCCTGATCACCGGAACC
CCAATGCCGCCGGTCAGGTTCTCCGGCGACTCGTGATGGTGCCCCGACGAAGAAAAATACGACAC
CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGA
ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
TGCGGGCGCTCAGTCGGCCAGAGGGGTGGGATGCACAAGCCTGGGATCGGTCGGGTCCCCCTCTA
CGTGCTGCCGATCCTGCTACCGCAACCCTCGGTTCGGTCCAAT
Found at i:17364888 original size:26 final size:26
Alignment explanation
Indices: 17364859--17364911 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17364849 CCGGTCCGAT
*
17364859 CTTAGACTGTGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
17364885 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
17364911 C
1 C
17364912 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:17365592 original size:26 final size:26
Alignment explanation
Indices: 17365563--17365613 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
17365553 CGATCCGATC
17365563 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
17365589 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
17365614 CCTAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:17367040 original size:12 final size:12
Alignment explanation
Indices: 17367023--17367050 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
17367013 TCGGCATAGA
17367023 GCCCAGCCACCC
1 GCCCAGCCACCC
17367035 GCCCAGCCACCC
1 GCCCAGCCACCC
17367047 GCCC
1 GCCC
17367051 GCTCCTTTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.14, C:0.68, G:0.18, T:0.00
Consensus pattern (12 bp):
GCCCAGCCACCC
Found at i:17368132 original size:26 final size:26
Alignment explanation
Indices: 17368096--17368147 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17368086 GTTGACTTAG
17368096 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCA-TCCCTAGTCTAA
17368122 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
17368148 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:17368545 original size:900 final size:892
Alignment explanation
Indices: 17366346--17369803 Score: 4434
Period size: 900 Copynumber: 3.9 Consensus size: 892
17366336 GTTGACTTAG
* * * *
17366346 GCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACGTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** *
17366411 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCA--G-CCGAGA
* * * * * * *
17366476 ACCTAACCGGCGGCTTTGGGGTTCTGACGATCGGGGGGGTCGGGGGGGTGTACGCACATGATGTG
128 ACCTGACC-G-AGCATTGGGGTTCTAACGATCGGGGGGGTCAGGGGGGTGTGCACACATGATGTG
* * *
17366541 CGATGGGTGCTGGTATTTGGCCCTTATATTGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
191 CGATGGATGCTGGTACTTGGCCCTTATATTGCCCCCTATCCCTCATCAAACCTTAAGAACTCACA
17366606 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATG
256 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATG
*
17366671 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTTT
321 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAA-T-TTTTTT
* *
17366736 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGTGGCCAAAACTCTTTCCGAAAA
384 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
17366801 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
449 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
17366866 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGC
514 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
17366931 ATTGGCACACAGAAATATGAAGATCTGCCGAAACCCACCTACTACCCTATCGATTCATGGCTTGC
579 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** *
17366996 GCATCTCGTCTCTCTGGTCGGCATAGAGCCCAGCCACCCGCCCAGCCACCCGCCCGCTCCTTTCG
644 GCATCCCGTCTCTCTGG-C--C--AG-G--CAG-TGCCCGCCC-G---CCCGCCCGCTCGTTTCG
* * * * * *
17367061 TCGGTTGGCTAAGGCATTCGGAGTTCATTCCTACTCTAAGAT-TAGACCGGACCGACGGTTGCGG
696 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCT-GACCGGACCGAGGGTTGCAG
* * ** * *
17367125 GAGCAGGATCGACAACACGCAAAGGGGGACCCAGTTGATCCCCTGCTTACGCATCCCGCCCCTCT
760 CAGCAGGATCGACAGCACGCAAAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* *
17367190 AGCCGGTTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-
825 -GGCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
17367254 -T--
889 CTAA
17367255 -C-TA---AG---ATT----G-----GAT---A--GGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
17367298 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCAGGGCACCAT---C---GCAG--GAGAACC
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCAGCCGAGAACC
*
17367355 TGACCGACGACATTGGGGTT-TCAGCGATCGGGGGGGTC-GGGGGGTGTGCACACATGATGTGCG
131 TGACCGA-G-CATTGGGGTTCT-AACGATCGGGGGGGTCAGGGGGGTGTGCACACATGATGTGCG
*
17367418 ATGGGA-GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
193 AT-GGATGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTTAAGAACTCACA
* * ** *
17367482 CCCCATTAAAAAGCATTTGAGATTTTACAGGTTTGCCACCAGTAGCCATTAAAGTGTCTGAAATG
256 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATG
* *
17367547 GGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
321 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAATTTTTTTGT
17367612 GCATGCCAAC-AAAATAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
386 GCATGCCAACAAAAAT-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
17367676 ATTTTAAAATATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
450 ATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
17367741 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGCA
515 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
17367806 ATGGCACGCAGAAAATATGTAGATGTGCCTAAACCCACCCACCAACCTATCGATCCACGGCTTGC
580 TTGGCACACAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
17367871 GCATCCTGTCTCTCTGACCAGTGTAGTGCTCGCCCGCCCGCCGGCTCGTTTCGTCGGTTGGCTTA
644 GCATCCCGTCTCTCTGGCCAG-GCAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* ** * * * * *
17367936 GGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCAGAATGAGGGGTACGGTAGCAGGATTGAC
708 GGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGACCGAGGGTTGCAGCAGCAGGATCGAC
** * ** *
17368001 AGCACATAGAGGGGGACCTTGCCGATCCCCGGCTTGCGGATCCCGCCCCTCTGGCTGGCTGAGCA
773 AGCACGCAAAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC-GGCTGAGCA
17368066 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
17368122 GCATACGGAGTTCA-TCCCTAGTCTAA-ATTGGACCGAACAGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCC-AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* *
17368185 GCTCGAGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCAGAG
65 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCA--GCC-GAG
* *
17368250 AACCTGACCGGTAGCATTGGGGTTCTAACGATCGGGGGGGGTC-TGGGGGTGTGCGCACATGATG
127 AACCTGACC-G-AGCATTGGGGTTCTAACGATC-GGGGGGGTCAGGGGGGTGTGCACACATGATG
* * * * *
17368314 TGCCATGGATTCTGGTACTTGGCCCTTATATTGGCCCCTTGTCCCCCATCAAA-CTTCAAGAACT
189 TGCGATGGATGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTT-AAGAACT
*
17368378 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTCA
252 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCA
*
17368443 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTTGAGTTTTTAGCTGAATTTTT
317 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAATTTTT
**
17368508 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTTCAAAA-TGCCTTCCGA
382 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGA
* * * **
17368572 AAAAATTATAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG
446 AAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
17368637 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAAT
511 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
17368702 GTCATTGGCACACAGAAATATGAAGATGTGCCTAAAGCCACTTACCACCCTATCGATCCACGGCT
576 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
17368767 TGCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGC
641 TGCGCATCCCGTCTCTCTGGCC-AGGCAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * ** *
17368832 TTTGGCATACTGAGTTCATTCCCAATCTAAGATCGGATGGGACCGAGGGTTGCAGCAGCAAGATC
705 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGACCGAGGGTTGCAGCAGCAGGATC
* * * *
17368897 GACAGCACGCAAAGGGGGACCCGGTCGATCCCCGACTTGTGCATCCCGCCCCTCTGGC--C-G-G
770 GACAGCACGCAAAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCGGCTGAG
* *
17368958 ---CTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 CACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* **
17369013 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTTCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
17369078 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGGAG-AACC-TG-A-C
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCAGCCGAGAACC
* * * * *
17369139 GGA-CG-GCATTGGGGTTCCAGCGATCGGGGGGGTCAGGGGGGTGTGCACGCATGATGTGCAATG
131 TGACCGAGCATTGGGGTTCTAACGATCGGGGGGGTCAGGGGGGTGTGCACACATGATGTGCGATG
*** * *
17369202 GGCACTGGTATTTGGCCCTTATATTGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
196 GATGCTGGTACTTGGCCCTTATATTGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCC
* * *
17369267 TTAAAGAGCATTTGAG-TTTTACATGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGAC
261 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGAC
* * * *
17369331 ACTTTTTTCAAATAGTCACAAAATCTTGTACACA-TCGGGTTTTTAGCTGAATTTTTTTTTGCTT
326 ACTTTTTTCAAATGGTCACAAAATCTTGTACA-ATTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * **
17369395 GCCAAAAAAAATACAAGGATCACGTCTACCAAATTT-GGACCAAAACTCCTTTTGAAAAAATTTT
390 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
** * * * *
17369459 AAAAAATCCCGCACCGTAAAAAGTTTTAAAAATCGTGAAAGATAGAAAACGAGTTGTCTTGCCAT
455 AAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
17369524 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACATTGTC
520 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** * * *
17369589 ATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACGCATCC
585 ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * **
17369654 CGTCTCCCTGGCC-GGCA-TAG--TGCCCGCCCGCCCACTCATTTTGTCGGTTGGCTTAGGTGTA
650 CGTCTCTCTGGCCAGGCAGT-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * *
17369715 TGGAGTTCATTCCCAGTCTAAGATCCGATCGGACCGAGGGTTGCAGCAGCAGGATTGGCAGCACG
714 CGGAGTTCATTCCCAGTCTAAGATCTGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACG
*
17369780 CAGAGGGGGACCCAGCCGATCCCC
779 CAAAGGGGGACCCAGCCGATCCCC
17369804 TACTTACGCA
Statistics
Matches: 2254, Mismatches: 232, Indels: 161
0.85 0.09 0.06
Matches are distributed among these distances:
862 2 0.00
863 178 0.08
864 1 0.00
865 1 0.00
866 1 0.00
867 6 0.00
868 3 0.00
869 2 0.00
870 3 0.00
872 3 0.00
873 5 0.00
874 309 0.14
875 111 0.05
876 187 0.08
878 212 0.09
879 138 0.06
880 58 0.03
881 69 0.03
883 3 0.00
884 2 0.00
885 3 0.00
886 2 0.00
887 70 0.03
888 69 0.03
889 3 0.00
891 76 0.03
892 89 0.04
894 4 0.00
895 1 0.00
896 2 0.00
897 1 0.00
899 235 0.10
900 391 0.17
901 9 0.00
904 2 0.00
907 2 0.00
908 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCAGCCGAGAACC
TGACCGAGCATTGGGGTTCTAACGATCGGGGGGGTCAGGGGGGTGTGCACACATGATGTGCGATG
GATGCTGGTACTTGGCCCTTATATTGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
AAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCAGGCAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCTGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCA
AAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCGGCTGAGCACCCGCACGC
TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:17369023 original size:26 final size:26
Alignment explanation
Indices: 17368987--17369039 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17368977 GTTGACTTAG
17368987 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17369013 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17369039 G
1 G
17369040 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17370383 original size:725 final size:726
Alignment explanation
Indices: 17369125--17370525 Score: 1978
Period size: 725 Copynumber: 1.9 Consensus size: 726
17369115 GGCACCATCA
*
17369125 CCGGAGAACCTGACGGACGGCATTGGGGTTCCAGCGATCGGGGGGGTCAGGGGGGTGTGCACGCA
1 CCGGAGAACCTGACGGACAGCATTGGGGTTCCAGCGATCGGGGGGGTCAGGGGGGTGTGCAC-CA
*
17369190 TGATGTGCAATGGGCACTGGTATTTGGCCCTTATATTGCCCCCTATCCCTCATCAAACCTTGAGA
65 TGATGTGCAATGGGCACTGGTACTTGGCCCTTATATTGCCCCCTATCCCTCATCAAACCTTGAGA
* **
17369255 ACTCACACCCCCTTAAAGAGCATTTGAGTTTTACATGTTTGCTGCCAGTAGCCATTAAAGTGTTT
130 ACTCACACCCCCTTAAAGAGCATTTGAGTTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCA
* * *
17369320 GAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACATCGGGTTTTTAGCTGAATTT
195 GAAATGGGGACACTTTTTTCAAATAGTCACAAAATCCTGTACACATCGAGTTTTTAGCTGAATTG
* * * **
17369385 TTTTTTGCTTGCCAAAAAAAATACAAGGATCACGTCTACCAAATTTGGACCAAAACTCCTTTTGA
260 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAATTTGGACCAAAACACCTTCCGA
** ** * * * * *
17369450 AAAAATTTTAAAAAATCCCGCACCGTAAAAAGTTTTAAAAATCGTGAAAGATAGAAAACGAGTTG
325 AAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTGAAAAATCATGAAAAATAGAAAACGACTCG
* *
17369515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
390 TCTTGCCAAGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
17369580 GACATTGTCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCT
455 GACATTGTCATGCAAAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCT
* ** *
17369645 TACGCATCCCGTCTCCCTGGCCGGCATA-G-T-GCCCGCCCGCCCACTCATTTTGTCGGTTGGCT
520 TACGCAACCCGTCTCCCTAACCGGCATAGGCTCGCCCGCCCGCCCACTCATTTCGTCGGTTGGCT
** * * * * *
17369707 TAGGTGTATGGAGTTCATTCCCAGTCTAAGATCCG-ATCGGACCGAGGGTTGCAGCAGCAGGATT
585 TAGGCATACGGAGTTCATTCCCAGTCTAAGAT-CGAACCAGACCGAGGGTTGCAGCAACAGGATC
*
17369771 GGCAGCACGCAGAGGGGGACCCAGCCGATCCCCTACTTACGCATTTTTCTTTGCCAGGGCTCCAT
649 GGCAGCACGCAGAGGGGAACCCAGCCGATCCCCTACTTACGCATTTTTCTTTGCCAGGGCTCCAT
17369836 CGCCAGAGCATTG
714 CGCCAGAGCATTG
* * * *
17369849 CCGGAGAACCTGTCCGG-CAGCATTGGTGTTCCGGCGATCGGGGGGG-CGGGGGGTGTGTGCA-C
1 CCGGAGAACCTG-ACGGACAGCATTGGGGTTCCAGCGATCGGGGGGGTCAGGGGG-GTGTGCACC
* ** *
17369911 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATTTTGACCCCCTATCCCTCATCAAACCTCT-
64 ATGATGTGCAATGGGCACTGGTACTTGGCCCTTATATTG-CCCCCTATCCCTCATCAAACCT-TG
* * *
17369975 AGAACTCACTCTCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGT
127 AGAACTCACACCCCCTTAAAGAGCATTTGAG-TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
17370040 GTCAGTAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGA
191 GTCAGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCCTGTACACATCGAGTTTTTAGCTGA
* * *
17370105 ATTGTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGA-CAAAACACC
256 ATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAATTT--GGACCAAAACACC
17370169 TTCCGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTGAAAAATCATGAAAAATAGAAAAC
319 TTCCGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTGAAAAATCATGAAAAATAGAAAAC
*
17370234 GACTCGTCTTGCCAAGAAACTTCACGAGACGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
384 GACTCGTCTTGCCAAGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
17370299 AAAAATGGCATTGGT-ATGTAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
449 AAAAATGACATT-GTCATGCAAAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * *
17370363 CAC-GACTTGCGTAACCCGTCTCTCTAACCGGCGTAGTGCTCGCCCGCCCGCCCGCCCGCTCGTT
513 CACAG-CTTACGCAACCCGTCTCCCTAACCGGCATAG-GCT----CGCCCGCCCGCCCACTCATT
* *
17370427 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCGAGGGTTGT
572 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGC
*
17370492 GGCAACAGGATCGGCAGCACGCAGAGGGGAACCC
637 AGCAACAGGATCGGCAGCACGCAGAGGGGAACCC
17370526 GACCAATCCC
Statistics
Matches: 592, Mismatches: 67, Indels: 27
0.86 0.10 0.04
Matches are distributed among these distances:
722 35 0.06
723 57 0.10
724 180 0.30
725 210 0.35
726 5 0.01
727 1 0.00
728 1 0.00
732 1 0.00
733 102 0.17
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (726 bp):
CCGGAGAACCTGACGGACAGCATTGGGGTTCCAGCGATCGGGGGGGTCAGGGGGGTGTGCACCAT
GATGTGCAATGGGCACTGGTACTTGGCCCTTATATTGCCCCCTATCCCTCATCAAACCTTGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGTTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCAG
AAATGGGGACACTTTTTTCAAATAGTCACAAAATCCTGTACACATCGAGTTTTTAGCTGAATTGT
TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAATTTGGACCAAAACACCTTCCGAA
AAAATTTTAAAAAATCCCAAACCACAAAAAGTTTGAAAAATCATGAAAAATAGAAAACGACTCGT
CTTGCCAAGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
ACATTGTCATGCAAAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
ACGCAACCCGTCTCCCTAACCGGCATAGGCTCGCCCGCCCGCCCACTCATTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAGCAACAGGATCGG
CAGCACGCAGAGGGGAACCCAGCCGATCCCCTACTTACGCATTTTTCTTTGCCAGGGCTCCATCG
CCAGAGCATTG
Found at i:17370632 original size:26 final size:26
Alignment explanation
Indices: 17370603--17370654 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
17370593 TTGACTTAGC
17370603 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
17370629 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
17370655 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:17371524 original size:26 final size:26
Alignment explanation
Indices: 17371494--17371546 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17371484 GTTGACTTAG
*
17371494 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17371520 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17371546 G
1 G
17371547 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17373274 original size:26 final size:26
Alignment explanation
Indices: 17373240--17373292 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17373230 GTTGACTTAG
17373240 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACGGAGTTCATTCCCAGACTAA
*
17373266 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
17373292 G
1 G
17373293 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:17376102 original size:26 final size:26
Alignment explanation
Indices: 17376048--17376125 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
17376038 GTTGACTTAG
*
17376048 GCATACGGAGTTCATT-CAAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17376073 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17376099 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17376125 G
1 G
17376126 ATCGGATCAG
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
25 16 0.31
26 35 0.69
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17377904 original size:26 final size:26
Alignment explanation
Indices: 17377868--17377920 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17377858 CTCTCGTTTC
*
17377868 GCATACAGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17377894 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17377920 G
1 G
17377921 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17378797 original size:26 final size:25
Alignment explanation
Indices: 17378768--17378846 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 25
17378758 ATTGACTTAG
17378768 GCATACAGAGTTCGTTCCCATTCTAA
1 GCATAC-GAGTTCGTTCCCATTCTAA
*
17378794 GCATATGGAGTTCGTTCCCATTCTAA
1 GCATA-CGAGTTCGTTCCCATTCTAA
* *
17378820 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACG-AGTTCGTTCCCATTCTAA
17378846 G
1 G
17378847 ATCGAACCAG
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
25 1 0.02
26 46 0.98
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (25 bp):
GCATACGAGTTCGTTCCCATTCTAA
Found at i:17379195 original size:925 final size:925
Alignment explanation
Indices: 17377875--17379718 Score: 2866
Period size: 925 Copynumber: 2.0 Consensus size: 925
17377865 TTCGCATACA
*
17377875 GAGTTCATTCCCATTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
1 GAGTTCATTCCCATTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGT
* * *
17377940 TGCGGCAGCAAATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTATCTTTACCGGGGCACCATC
66 TGCGACAGCAAATACTGGGCTCAGGCATGTGCTGGTGCCGCATTTATCTTCACCGGGGCACCATC
* * *
17378005 GCCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGCAATCAGGGGGGCCGGGGG
131 GCCAGAGCATCGTCGGAGAACCTGACCGGCGACATTGGGGTTCCGACAATCAGGGGGGCCGGGGG
* *
17378070 GGTGTGCGCACATGGTGTGTGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
196 GGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
17378135 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
261 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
17378200 CCATTAAAGTGTCTGAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTCGAGT
326 CCATTAAAGTGTCTGAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTCGAGT
17378265 TTTTAGCTGAATCTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGAAGC
391 TTTTAGCTGAATCTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGAAG-
* * * *
17378330 CAAAAA-TGCT-TCTGAAAAAATTTTAAAAAATCTCAAACGGCAAAAAGTTTCAAAAATCATGAA
455 CAAAAACTCCTGT-TGAAAAAATGTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAA
*
17378393 AAATACAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAAT
519 AAATACAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTATATGAAT
*
17378458 TTACAAGCCATAAAAATAGCA-TTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTAGCA
584 TTACAAGCCATAAAAATAGCAGTT-GCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * *
17378522 CCCTATCAATCCACGGCTTGTGCATC-CTGTCTCTCTGGC-CGACGTAGTGCCCGTCCGCCCGCC
648 CCCAATCAATCCACGGCTTGCGCATCTC-GTCTCTCTAGCTCG-CGTACTGCCCGCCCGCCCGCC
* * * ** *
17378585 CGTTTGTTTCGTCGGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGTTCAGACCAGACTG
711 CGCTCGTTTCATCGGTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGACTG
* * *
17378650 AGGGTTGTAGCAGCT-GGATCGACAACACGCAAAGGGGGACCAGGCCGATCCCCGGCTTGCGCAT
775 AGGGTTGCAGCAG-TAGGATCGACAACACGCAAAGAGGGACCAGACCGATCCCCGGCTTGCGCAT
17378714 CCCACC-CTTCTAGCCGACTGAGCGCCCACACGCTCGTTTCCTGCATTGACTTAGGCATACAG-A
839 CCCACCAC-TCTAGCCGACTGAGCGCCCACACGCTCGTTTCCTGCATTGACTTAGGCATAC-GTA
* *
17378777 GTTCGTTCCCATTCTAAGCATATG
902 GTTCATTCCCAGTCTAAGCATATG
*
17378801 GAGTTCGTTCCCATTCTAAGCATAC-GAAGTTCATTCCCAGTCTAAGATC-GAACCAGACCAAGG
1 GAGTTCATTCCCATTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATCAG-ACCAGACCAAGG
* * *
17378864 GTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTATCTTCACCGGGGCACTA
64 GTTGCGACAGCAAATACTGGGCTCAGGCATGTGCTGGTGCCGCATTTATCTTCACCGGGGCACCA
* ** *
17378929 TCGCCAGAGCATTGAT-GGAGAACCTGACCGGCGATGTTGGGGTTCCGACGATCAGGGGGGCC-G
129 TCGCCAGAGCATCG-TCGGAGAACCTGACCGGCGACATTGGGGTTCCGACAATCAGGGGGGCCGG
*
17378992 GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCC
193 GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
17379057 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
258 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
17379122 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTCG
323 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTCG
17379187 AGTTTTTAGCTGAATCTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGA
388 AGTTTTTAGCTGAATCTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGA
* * *
17379252 AGCAAAAACTCCTGTTGAAAAAATGTTAAAAAATCCCGACCCGTAAAAAGTTTCAAAAATCATGA
453 AGCAAAAACTCCTGTTGAAAAAATGTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGA
* *
17379317 AAAATACAAAACGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAA
518 AAAATACAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTATATGAA
* * * *
17379382 TTTACAAGCCATAAAAATGGCAGTTGCACGCAGAAATATGAGGATGTGCCTAAACCCACCTACCA
583 TTTACAAGCCATAAAAATAGCAGTTGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
17379447 CCCAATCGATCCATGGCTTGCGCATCTCGTCTCTCTAGCTTGCGTACTGCTCGCCCGCCCGCCCG
648 CCCAATCAATCCACGGCTTGCGCATCTCGTCTCTCTAGCTCGCGTACTGCCCGCCCGCCCGCCCG
* * *
17379512 CTCGTTTCATCGGTTGGCTTAGGCAAATGGAGTTCATTCCCAGTCTAAGATCGGACTGACTGAGG
713 CTCGTTTCATCGGTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATCAGACAGACTGAGG
* * * * * * *
17379577 GTTGCGGTAGTAGGATCGGCAGCACGCAAAGAGGGACCCGATCGATCCCCGGCTTGCGCATCCCG
778 GTTGCAGCAGTAGGATCGACAACACGCAAAGAGGGACCAGACCGATCCCCGGCTTGCGCATCCCA
* ** * * **
17379642 CCACTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTTCAT
843 CCACTCTAGCCGACTGAGCGCCCACACGCTCGTTTCCTGCATTGACTTAGGCATACGTAGTTCAT
17379707 TCCCAGTCTAAG
908 TCCCAGTCTAAG
17379719 ATCAGATCGG
Statistics
Matches: 837, Mismatches: 70, Indels: 24
0.90 0.08 0.03
Matches are distributed among these distances:
923 2 0.00
924 132 0.16
925 528 0.63
926 174 0.21
927 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (925 bp):
GAGTTCATTCCCATTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGT
TGCGACAGCAAATACTGGGCTCAGGCATGTGCTGGTGCCGCATTTATCTTCACCGGGGCACCATC
GCCAGAGCATCGTCGGAGAACCTGACCGGCGACATTGGGGTTCCGACAATCAGGGGGGCCGGGGG
GGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTGAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATCTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGAAGC
AAAAACTCCTGTTGAAAAAATGTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAA
ATACAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTATATGAATTT
ACAAGCCATAAAAATAGCAGTTGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC
AATCAATCCACGGCTTGCGCATCTCGTCTCTCTAGCTCGCGTACTGCCCGCCCGCCCGCCCGCTC
GTTTCATCGGTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATCAGACAGACTGAGGGTT
GCAGCAGTAGGATCGACAACACGCAAAGAGGGACCAGACCGATCCCCGGCTTGCGCATCCCACCA
CTCTAGCCGACTGAGCGCCCACACGCTCGTTTCCTGCATTGACTTAGGCATACGTAGTTCATTCC
CAGTCTAAGCATATG
Found at i:17380609 original size:26 final size:26
Alignment explanation
Indices: 17380573--17380625 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17380563 GTTGACTTAG
17380573 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
17380599 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
17380625 G
1 G
17380626 ACTGGATTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:17381033 original size:898 final size:898
Alignment explanation
Indices: 17379692--17381354 Score: 2519
Period size: 898 Copynumber: 1.8 Consensus size: 898
17379682 GTTGACTTAG
* * *
17379692 GCATACGTAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC--ATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
17379757 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATTGGAGA
64 CTCGGCCATGTGCTGGTGCCGCATTTTTCTTCACCGACGCACCATCGCCGGAGCATCATCGGAGA
* *
17379822 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCATGGGGGTGGGTGTGCGCACTTGAT
129 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCA---GGGTGGGTGTGCGCACATGAT
*
17379887 GTGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCAAGAACT
191 GTGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* * * *
17379952 CACACCCCCTCAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGA
256 CACACCCCCTCAAAAAGCATTTCAGATCTTACAGGCTTGCTGCCAGTAGCAATTAAAGTGTCCGA
*
17380017 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCAAGTTTTTAGCTGAATTTTT
321 AATGAGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCAAGTTTTTAGCTGAATTTTT
* * *
17380082 TTGCGCATGCCAACAAAAATACAAGGATCATGTCTACAACGTTTGGGGCCAAAACTCCTTCCGAA
386 TTGCGCATGCCAACAAAAATACAAGGATCACGTCTACAACGTTTGAGGCCAAAACTCCATCCGAA
* * ** * *
17380147 AAAATTTTGAAAAATCCCAAAGCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCAT
451 AAAATTTTAAAAAATCCCAAACCAAAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCAT
* *
17380212 CTTGCCATGAAACTTCACGTTAAGGCTTAAGGGACCATTCTACCAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAACGCTTAAGGGACCATTCTACCAATTTACAAGCCATAAAAATG
* * *
17380277 GCATTGGCATACAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
17380342 GCGCATCTCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCAGTT
646 GCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCG-T--TTT-GTCAGTT
* *
17380407 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTACGGCAGCAGG
707 GGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTACGGCAGCAGG
17380472 ATCGATAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTCCGCATCCCGCCCCTCTGGCCGGC
772 ATCGATAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTCCGCATCCCGCCCCTCTGGCCGGC
17380537 TGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAA
837 TGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAA
**
17380599 GCATACGGAGTTCATTCCCAGTCTAAGA-C-T-GGATTGAGGGTTGCGGCAGCACATGCTGGGCT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * *
17380661 TGGCCATGTGCTGGTGCCGCATTTTTCTTCGCCGACGCACCATCGCCGGAGCATCGTCGGAGAAC
66 CGGCCATGTGCTGGTGCCGCATTTTTCTTCACCGACGCACCATCGCCGGAGCATCATCGGAGAAC
* * * *
17380726 TTTACTGATGGCATTGGGGTTCC-AGCGATCGGGGGGGCCA-GG-GGGTGTGCGCACATGATGTG
131 CTGACCGACGGCATTGGGGTTCCGA-CGATC-GGGGGGCCAGGGTGGGTGTGCGCACATGATGTG
* * **
17380788 GGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * * *
17380853 ACCCCCTTAAAGAGCATTTCAGATCTTACAGGCTTGCTGCTAGTAGCCATTAAAGTGTCCGAAAT
259 ACCCCCTCAAAAAGCATTTCAGATCTTACAGGCTTGCTGCCAGTAGCAATTAAAGTGTCCGAAAT
*
17380918 GAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
324 GAGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCAAGTTTTTAGCTGAATTTTTTTG
* * *
17380983 CGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGATGCCAAAACTCCATCCGAAAAA
389 CGCATGCCAACAAAAATACAAGGATCACGTCTACAACGTTTGAGGCCAAAACTCCATCCGAAAAA
* * *
17381048 ATTTTAAAAAATCTCGAACCAAAAAAAGTTTCAAAAATAGTGACAAATAGAAAACGAGTCATCTT
454 ATTTTAAAAAATCCCAAACCAAAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCATCTT
* * **
17381113 GCCATGAAACTTCACGTGAACGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAACGCTTAAGGGACCATTCTACCAATTTACAAGCCATAAAAATGGCA
* * *
17381178 TTGGCACCCAAAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGTTTGCG
584 TTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** ** *
17381243 CATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCTTGTTTTGTCGGTTGGCTTAG
649 CATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGTTTTGTCAGTTGGCTTAG
* * *
17381308 GCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTT
714 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTT
17381355 GTGGTAGCAC
Statistics
Matches: 680, Mismatches: 74, Indels: 17
0.88 0.10 0.02
Matches are distributed among these distances:
894 55 0.08
895 3 0.00
897 1 0.00
898 473 0.70
899 2 0.00
901 1 0.00
902 107 0.16
903 10 0.01
906 1 0.00
907 27 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
CGGCCATGTGCTGGTGCCGCATTTTTCTTCACCGACGCACCATCGCCGGAGCATCATCGGAGAAC
CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGTGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTCAAAAAGCATTTCAGATCTTACAGGCTTGCTGCCAGTAGCAATTAAAGTGTCCGAAATGA
GGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCAAGTTTTTAGCTGAATTTTTTTGCG
CATGCCAACAAAAATACAAGGATCACGTCTACAACGTTTGAGGCCAAAACTCCATCCGAAAAAAT
TTTAAAAAATCCCAAACCAAAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCATCTTGC
CATGAAACTTCACGTGAACGCTTAAGGGACCATTCTACCAATTTACAAGCCATAAAAATGGCATT
GGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGTTTTGTCAGTTGGCTTAGGC
ATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTACGGCAGCAGGATCGATAGC
ACGCAGAGGGGGACCCGACCGATCCCCGGCTTCCGCATCCCGCCCCTCTGGCCGGCTGAACGCCC
GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAA
Found at i:17381435 original size:11 final size:11
Alignment explanation
Indices: 17381421--17381445 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
17381411 GCACCATCAC
17381421 CGGAGCATCGT
1 CGGAGCATCGT
17381432 CGGAGCATCGT
1 CGGAGCATCGT
17381443 CGG
1 CGG
17381446 TGAACCTGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.28, G:0.40, T:0.16
Consensus pattern (11 bp):
CGGAGCATCGT
Found at i:17382487 original size:702 final size:705
Alignment explanation
Indices: 17380599--17382753 Score: 2698
Period size: 710 Copynumber: 3.1 Consensus size: 705
17380589 CCCAGTCTAA
* *
17380599 GCATACGGAGTTCATTCCCAGTCTAAGA-CTGG---A-TTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATC-GGACCAGATGAGGGTTGCGGCAGCACATGCTGGG
* * ** ** * *
17380659 CTTGGCCATGTGCTGGTGCCGCATTTTTCTTCGCCGACGCACCATCG-CCGGAGCATCGTCGGAG
65 CTCGGACATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTTGGGAACA-C--CGGAT
* * * *
17380723 AACTTTACTGATGGCATTGGGGTTCCAGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTG
127 AACATGACCGATGGCATTGGGGTTCCAGCGATCGGGGGGGCC-GGGGGGGTGCGCACATGATGTG
*
17380788 GGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
191 GGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGACAACTCAC
* * * * *
17380853 ACCCCCTTAAAGAGCATTTCAGATCTTACAGGCTTGCTGCTAGTAGCCATTAAAGTGTCCGAAAT
255 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
17380918 GAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
320 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
17380983 CGCATGCCAACAAAAATACAAGGATCACGTCTACCATG-TTTGATGCCAAAACTCCATCCGAAAA
385 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTG-GGCCAAAACT-CTTTCGAAAA
* * *
17381047 AATTTTAAAAAATCTCGAACCAAAAAAAGTTTCAAAAAT-AGTGACAAATAGAAAACGAGTCATC
448 AATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCATC
* * *
17381111 TTGCCATGAAACTTCACGTGAACGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
512 TTGCCATGGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
17381176 CATTGGCACCCAAAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGTTTG
577 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * ** *
17381241 CGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCTTGTTTTGTCGGTTGGCTT
642 CGCATCCCGTCTCTCTGGCCGCTGTAG-G-CCGACCGCACGCCCGCTTGTCATG-CGGTTGACTT
17381306 AG
704 AG
* * * *
17381308 GCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGAT-GAGGGTTGCGGCAGCACATGCTGGG
* * * * *
17381373 CTCGGACGTGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCGGAGC
65 CTCGGACATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCAT---C---G--T--TGGGAAC
* * *
17381438 ATCGTCGG-TGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCG
120 A-C--CGGAT-AACATGACCGATGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGG-GTGCG
* * *
17381502 CACTTGATGTGTGATGGATGCTGGTA-------C-----TTGG--CCTATCCCTCATCAAACCTT
180 CACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTT
* *
17381553 GACAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAG
245 GACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
17381618 TGTCTGGAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
310 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* *
17381683 AATTTTTTTGTGCATGCCAAAAAAAATATAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCA
375 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTC-
*
17381748 TTTCGAAAAAATTTTAAAAAATCCCGAATCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
439 TTTCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* *
17381813 GAGTCGTCTTGCCATGGAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCAT
504 GAGTCATCTTGCCATGGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * * *
17381878 AAATATGGCACTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGTTCC
569 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* *
17381943 ACGGCTGGCGCATCCCGTCTCTCTGGCCAGCTG-A-G-C-ACCGCACGCTCG-TT-TCATG-GGT
634 ACGGCTTGCGCATCCCGTCTCTCTGGCC-GCTGTAGGCCGACCGCACGCCCGCTTGTCATGCGGT
17382001 TGACTTAG
698 TGACTTAG
** * * *
17382009 GCATACGGAGTTCATTTTCAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAGCACATGCTCGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGA-TGAGGGTTGCGGCAGCACATGCTGGG
*
17382074 CTC-GAGCATGTGCTGCTGCCGCATTTTTCTTCGCCGGGGCACCATCGTTGGGAAACACCGGATA
65 CTCGGA-CATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTTGGG-AACACCGGATA
* * * *
17382138 ACATGACCGGTGGCATTGGGGTTCCAGCAATCAGGGGGGCCGGGGGGGTGTGCACATGATGTGGG
128 ACATGACCGATGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGGTGCGCACATGATGTGGG
*
17382203 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGA-AACTCACAC
193 ATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATCAAACCTTGACAACTCACAC
*
17382267 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGG
257 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
17382332 GGACACTTTTTTGAAATGGTCACCAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
322 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
17382397 CATGCCAACAAAAATACGAGGATCACGTCTACCAAGTTTTGGGCCCAAAACTACTTTCTAAAAAA
387 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGG-CCAAAACT-CTTTCGAAAAAA
17382462 TTTT-AAAAATCCCGAA-CAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
450 TTTTAAAAAATCCCGAACCA-CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
* * *
17382525 GCGAT-GATAATTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGC
514 GCCATGGA-ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
17382589 ATTGGCACATAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
578 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
17382654 GCATCCCGTCTCTCTGACCGGC-GTAGTG-C--CCGCCCGCCCGCTCATTTCGT-CGGTTGGCTT
643 GCATCCCGTCTCTCTGGCC-GCTGTAG-GCCGACCGCACGCCCGCT--TGTCATGCGGTTGACTT
17382714 AG
704 AG
* * * *
17382716 GGATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGA
17382754 CCAAGGGTTG
Statistics
Matches: 1261, Mismatches: 131, Indels: 110
0.84 0.09 0.07
Matches are distributed among these distances:
688 27 0.02
689 45 0.04
690 1 0.00
691 4 0.00
692 3 0.00
693 1 0.00
695 2 0.00
698 1 0.00
700 6 0.00
701 107 0.08
702 361 0.29
703 55 0.04
704 6 0.00
705 9 0.01
706 2 0.00
707 46 0.04
708 1 0.00
709 29 0.02
710 394 0.31
711 8 0.01
713 5 0.00
714 61 0.05
717 1 0.00
718 1 0.00
720 1 0.00
724 5 0.00
725 79 0.06
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (705 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGATGAGGGTTGCGGCAGCACATGCTGGGC
TCGGACATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTTGGGAACACCGGATAACA
TGACCGATGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGGTGCGCACATGATGTGGGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTTGACAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCTTTCGAAAAAATTTTAA
AAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGG
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGCTGTAGGCCGACCGCACGCCCGCTTGTCATGCGGTTGACTTAG
Found at i:17383592 original size:12 final size:12
Alignment explanation
Indices: 17383575--17383599 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
17383565 CCAACGTAAT
17383575 GCCCGCCCGCTC
1 GCCCGCCCGCTC
17383587 GCCCGCCCGCTC
1 GCCCGCCCGCTC
17383599 G
1 G
17383600 TTTCGTCAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.64, G:0.28, T:0.08
Consensus pattern (12 bp):
GCCCGCCCGCTC
Found at i:17383815 original size:26 final size:26
Alignment explanation
Indices: 17383779--17383829 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
17383769 TGACTTAGGC
17383779 ATACGGAGTTCATTCCCAGTCTAAGG
1 ATACGGAGTTCATTCCCAGTCTAAGG
17383805 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
17383830 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGG
Found at i:17385438 original size:886 final size:889
Alignment explanation
Indices: 17382009--17386802 Score: 6139
Period size: 886 Copynumber: 5.4 Consensus size: 889
17381999 GTTGACTTAG
* ** * * * *
17382009 GCATACGGAGTTCATTTTCAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAGCACATGCTCGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
17382074 CTCGAGCATGTGCTGCTGCCGCATTTTTCTTCGCCGGGGCACCATCGTTGG-GAAACACCGGATA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
17382138 ACATGACCGGTGGCATTGGGGTTCCAGCA-ATC-AGGGGGGCCGGGGGGGTGT--GCACATGATG
131 ACCTGACCGGCGGCATTGGGGTT-CTGGAGATCGA-GGGGGTCGGGGGGGTGTGCGCACATGATG
* * *
17382199 TGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGA-AACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
*
17382263 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
17382328 ATGGGGACACTTTTTTGAAATGGTCACCAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * *
17382393 TATGCATGCCAACAAAAATACGAGGATCACGTCTACCAAGTTTTGGGCCCAAAACTACTTTCTAA
389 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCCGAA
* * *
17382458 AAAATTTT-AAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCAT
453 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT----AACGAGTCGT
* *
17382522 CTTGCGATGATAA-TTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAAT
514 CTTGCCATGA-AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
17382586 GGCATTGGCA--CATAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAG
578 GGCATTGGCATGCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
17382649 CTTGCGCATCCCGTCTCTCTGACCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTT
641 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGT---CGCCCGCCCGCTCGTTTCGTCTGTTGGCTT
* * * * ** * * *
17382714 AGGGATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGTGGTAGCAGGATTGG
703 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATCGA
** *
17382779 CAGCACATAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCACCCCTCTGGCCGGCTGAGC
768 CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGC
* * * * **
17382844 GCCTG-T-ATGCTCATTTCGAGGGTTGACTTAGTTATACGGAGTTCATTCCCAGTCTAA
833 ACCCGCTCA--CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
17382901 GCATATGGAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAGGGCTGCGGCAGCAAATGCTGGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
17382966 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGACGGAGCATCGCCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * * **
17383031 ACCTAACCGGCGGCATT-AGGTT-TCGATGATCGGGGGGGCCGGGGGGGTG-GGGTGCATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCTGGA-GATCGAGGGGGTCGGGGGGGTGTGCGCACATGATGT
* * * *
17383093 GTGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAATCCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
*
17383158 CACCCCCTTAAA-AGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
260 CACCCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
17383222 ATGGGGACTCTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
17383287 TGTGCGTGCTAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTACTTCCGAAA
389 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
17383352 AAATTTTAAAAAGTCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATC
454 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT----AACGAGTCGTC
* **
17383417 TTGCCATGATAA-TTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGAGATAAAAATG
515 TTGCCATGA-AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
17383481 GCATTGGCA--CATAGAAATATGGAGATGTGCTTAATCCCACCTACCACCTTATCGATCCACGGC
579 GCATTGGCATGCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
17383544 TTGCGCATCCCATCTCTCTGGCCAACGTAATGCCCGCCCGCTCGCCCGCCCGCTCGTTTCGTCAG
642 TTGCGCATCCCGTCTCTCTGGCCGACGT-A---------G-TCGCCCGCCCGCTCGTTTCGTCTG
** * * * *
17383609 TTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCA
696 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCA
* * * * *
17383674 GGATCGACAGCATGCAGAGAGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCAGGCCG
761 GGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCG
* * * *
17383739 GTTGAGCACCTGCAT-GCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
826 GCTGAGCACCCGC-TCACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
17383803 GGATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGTA-GGAGAGTTGCGGCAGCACATGCTGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACC-GGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * * *
17383867 GCTCGGGCATGT-ATCGGTGCTGTATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCAGA
65 GCTCGAGCATGTGCT-GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGA
* * *
17383931 GAACCTGACCGTCGGCATTGGGGTTC-CG-G--CTA-----TCGGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCTGGAGATCGAGGGGGTCGGGGGGGTGTGCGCACATGATG
* * *
17383987 TGCGATGGGTGGTGGTACTTGGCCCTTGTATTGGCCCCCTAACCCTCATCAAACCTCAAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* *
17384052 ACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
17384117 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*** *
17384182 TGTGCATGCCAACAAAAAATACAAGGATCACGTCTACCAAGTTTGGAAACAAAACACCTTCCGAA
389 TGTGCATGCCAA-AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* *
17384247 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTCAAAAATAAAAAACGAGTCGT
453 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT----AACGAGTCGT
* *
17384312 CCTGCCATGAAACTTCACGTTAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
17384377 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTT
579 GCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
17384442 GCGCATCCCGTCTCTCTGGCCAACATAGT-GCCCGTCTGCCCATTTCGTC-GATTGGCTTAGGCA
644 GCGCATCCCGTCTCTCTGGCCGACGTAGTCGCCCGCCCGCTCGTTTCGTCTG-TTGGCTTAGGCA
* * * * **
17384505 TACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGCAGTAGCAGGATCGGTAGCA
708 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCA
* * * * * * * *
17384570 CGTAGAGGGGGACCCGACCGATCCCCGGTTTACACAGCCCGCCCCTCTGGCCGGCTGAGCGCCCG
773 CGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCG
* *
17384635 CTCACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCTAGTCTAA
838 CTCACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
17384687 GCATAAGGAGTTC-TTCCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGG
1 GCATAAGGAGTTCATT-CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * * *
17384751 GCTCGAGCATGTGCTGCTGCCACATTTGTCTTCATCGGGGCACCATTGCCGGAGCATCGTCGGAG
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * *
17384816 AACCTGACCGACGGCATTGGGGTTCTGGAGATTGAGGGGGTC-GGGGGGTGTCCACACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCTGGAGATCGAGGGGGTCGGGGGGGTGTGCGCACATGATGT
* *
17384880 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
17384945 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
17385010 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTGGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
17385075 GTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAAGTCCTTCCGAAAA
390 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
17385140 AAATTTAAAAAATCTCGAACCCCAAAAAGTTTTAAAAATCATGAAAAAT-ACGAGTCGTCTTGCC
455 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAACGAGTCGTCTTGCC
* * *
17385204 ATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAATATGGCATTG
520 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
**
17385269 GCATGCAAAAATATGAAGATGTGCCTAAACCCACCTATGACCCTATCGATCCACGGCTTGCGCAT
585 GCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
17385334 CCCGTCTCTCTGGCTGGCGTAGT-GCCCGCCCGCTCGTTTCGTCTGTTGGCTTAGGCATACGGAG
650 CCCGTCTCTCTGGCCGACGTAGTCGCCCGCCCGCTCGTTTCGTCTGTTGGCTTAGGCATACGGAG
* * * *
17385398 TTCATTCCCAGTCTAAGATCAGACCAGAGCGAGGGTTGCAGCACCAAGATCGACAGCACGCAGAG
715 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAG
* * * * * * *
17385463 GGGGACTCGGTCGATCCCCGGCTTGCGCATCTCACCTCTTTGGCCGGCTGAGCACCCGCACGCTC
780 GGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCTCACTC
* * *
17385528 GTTTCATGGGTTGACTTAGGCATACGTAATTCATTCCCAGTCTAA
845 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
17385573 GCATATA-GAGTCCATTCCCAGTCTAACATCAGATCAGACCGAGGGTTGTGGCAGCACATGCTGG
1 GCATA-AGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * *
17385637 GCTCGGGCATGTGTTGGTGCCGTATTTTTCTTTGTCGAGGCA-CATCGTCGGAGCATCGCCAGAG
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * * *
17385701 AACCTGACCGGAGGCATTGAGGTTCCGGCGATCG-GGGGAGTCGGGGGGGTGTGCGCACGTGATG
130 AACCTGACCGGCGGCATTGGGGTTCTGGAGATCGAGGGG-GTCGGGGGGGTGTGCGCACATGATG
* * ** *
17385765 TGCGATGGGTGCTGGTACTTCGCGCTTATATTCACCTCCTATCCCTCATCAAACCTCAAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
*
17385830 ACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
17385895 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
17385960 TGTTCATGCCAAAAAAAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAA
389 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
17386025 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTC
454 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT----AACGAGTCGTC
17386090 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
17386155 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATTGATCCACGGCTTG
580 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
17386220 CACATCCCGTCTCTTTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGT-TGGTTGGCTTAGG
645 CGCATCCCGTCTCTCTGGCCGACGTAGT---CGCCCGCCCGCTCGTTTCGTCT-GTTGGCTTAGG
* * * *** * *
17386284 CATACAGAGTTCATTCCCAGTCTAAGATTGAATTGGACTGAGGGTTGCAGCAGTAGGATCGACAG
706 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAG
* * * *
17386349 CACACAGAGGGGGACCTCGACCGATCCCCGGCTTGCACATCCCACCCCTCTGGCTGGCTGAGCAC
771 CACGCAGAGGGGGACC-CGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCAC
* *
17386414 CCG-TACACTCGATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
835 CCGCT-CACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
17386469 GCATACA-GAGTTCATTTCCAGTCTAAGATCGAACCGGACCAAGGGTTACGGTAGCACATGCTAG
1 GCATA-AGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
** * * * * ** *
17386533 GCTTAAGCATGTGTTGGTGCCACATTTTTCTTCGCCGGGGCACCGTCGTCAAAGCATCGACGGAG
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * * * *
17386598 AGCCTGACTGGCGGCATTAGGGCTCTGGCGATCG-GTGGGGTCGAGGGGGTTGTGCGCACATGAT
130 AACCTGACCGGCGGCATTGGGGTTCTGGAGATCGAG-GGGGTCG-GGGGGGTGTGCGCACATGAT
* * *
17386662 GTGCGATGGGTGCTGGTACTTGGCGCTTATGTTAGCCCCCTATCCCTCATCAAACCTCAAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
*
17386727 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
17386792 AATGGGGACAC
323 AATGGGGACAC
17386803 GTCTACCAAG
Statistics
Matches: 3416, Mismatches: 420, Indels: 126
0.86 0.11 0.03
Matches are distributed among these distances:
883 6 0.00
884 310 0.09
885 52 0.02
886 726 0.21
887 4 0.00
888 1 0.00
890 1 0.00
891 247 0.07
892 341 0.10
893 117 0.03
894 367 0.11
895 300 0.09
896 415 0.12
897 49 0.01
898 156 0.05
899 1 0.00
901 2 0.00
902 310 0.09
903 8 0.00
904 2 0.00
905 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCTGGAGATCGAGGGGGTCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACGTAGTCGCCCGCCCGCTCGTTTCGTCTGTTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGG
GGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCTCACTCG
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:17386479 original size:26 final size:26
Alignment explanation
Indices: 17386443--17386495 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17386433 GTTGACTTAG
*
17386443 GCATACGGAGTTCA-TTCCTAGTCTAA
1 GCATACAGAGTTCATTTCC-AGTCTAA
17386469 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
17386495 G
1 G
17386496 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:17387320 original size:26 final size:26
Alignment explanation
Indices: 17387268--17387320 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17387258 GTTGACTTAG
*
17387268 GCATACAGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGCATAA
* *
17387294 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACAGAGTTCATTCCCAGCATAA
17387320 G
1 G
17387321 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCATAA
Found at i:17388222 original size:26 final size:26
Alignment explanation
Indices: 17388192--17388242 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17388182 TGACTTAGGT
*
17388192 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
17388218 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
17388243 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:17389109 original size:26 final size:26
Alignment explanation
Indices: 17389080--17389135 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
17389070 TGGGTTGACT
17389080 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
* *
17389106 TAAGCATACGGAGTTCATTTCTAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
17389132 TAAG
1 TAAG
17389136 ATCGAACCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:17389802 original size:895 final size:894
Alignment explanation
Indices: 17386800--17394531 Score: 9595
Period size: 893 Copynumber: 8.6 Consensus size: 894
17386790 GAAATGGGGA
* *
17386800 CACGTCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAATTTTAAAAAATCCCCGAACCGTAA
1 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CCCGAACCGCAA
* * * * *
17386865 AAAGTTTCGAAAATCATGAAAAATAAAAAATGAGTCATCTTGCCATGATAA-TTCACGTGATGGC
65 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA-AACTTCACGTGAAGGC
**
17386929 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACCA-AAATATGAAGA
129 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAAGA
* *
17386993 TGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGCCGGCG
193 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
*
17387058 TAGTGCCCGTCCGCCCGCCCGCCCGCTCGTTAGTTCCGTCAGTTGGCTTAGGCATACGGAGTTCA
258 TA------GT--GCCCGCCCGCCCGCTCGTT--TT--GTCGGTTGGCTTAGGCATACGGAGTTCA
* * *
17387123 TTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGAGGG
311 TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGGG
* * * * * * * *
17387188 ACCCGATCGATCCCCGGCTTTCACTTCCTGCCCCTCTGGTCGACTGAGCACCCGTACGCTCGTTT
376 ACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTT
* * * *
17387253 CGTAGGTTGACTTAGGCATACAGAGTTCATTCCCAGCCTAAGCATACGGAGTTCATTCCCAGTAT
441 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * *
17387318 AAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTTGAGCATGTGTTGGTGCCGCAT
506 AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTCAGCATGTGTTGGTGCCGCAT
* ** * * *
17387383 TTCTCTTCACCGGGGCACCTTCGTCGGGGCATAATCGCCGGAGCATCGTCGGAGAACCTGATCGA
571 TTTTCTTCGTCGGGGCA-C--CGTC---G-----T---CGGAGCATCGCCGGAGAACCTGACCGG
* * *
17387448 CGGCATTGTGGTTCCGACGATCGGGGGCGCCTGGGGGGTGTGCGCACATGATGTGTGATGGGTGC
622 CGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
17387513 TGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTGACACCCCCTTAA
686 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
17387578 AGAGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
751 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
17387643 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTTGCATGCCG
816 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA--TTTTTTTTGCATGCCA
17387708 ACAAAAATACAAGGAT
879 ACAAAAATACAAGGAT
* * * * *
17387724 CATGTCTACCAAGTATGGGGCCAAAATTCCTTCCGAAAAAATTTTAAAAAATCCTGAACTGCAAA
1 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAA
* *
17387789 AAGTTTCAAAAATCATGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTT
66 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
17387854 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
131 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * *
17387919 G-CTAAAACCCATCTACCACCCTATCGATCCACAGCTT-CGCATCCCGTCTCTTTGGCCGGCGTA
196 GCCT-AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* * * *
17387982 GTGCCTGCCCGCTCGCCCGTCCGCCCGCTCATTTTGTCGGTTCGCTTAGGTATACGAAGTTCATT
260 --G--TG--C-C-CG--C--CCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * *
17388047 CCCAGTCTAAGACCAGACCAGACCGAGGGTTACAGTA-CTAGGATCGATAGCACACAGAGGGGGA
313 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC-AGGATCGACAGCACACAGAGGGGGA
** * ** *
17388111 CCCGATTGATCCCCGGCTTGCGCATCTTGCCCCTCTGGCCAGCTGAGCACCCGCACGCTCATTTC
377 CCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTC
* * * *
17388176 ATGGTTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTA
442 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * * * *
17388241 AGATCGGACCGGACC-ACAGGTTGCGGTAACACATGCTAGGC-TCGGGCATGTGTTGGTACCGTA
507 AGATCGGACCGGACCGA-GGGTTGCGGCAGCACATGCTGGGCTTC-AGCATGTGTTGGTGCCGCA
* * * * *** *
17388304 TTTTTCTTCGTCGGGGCATCATCGCCAGAGCATCATTGGAGAACCTGACCGGCCGCATTGGGGTT
570 TTTTTCTTCGTCGGGGCACCGTCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTT
* * * *
17388369 CTGGCGATCGGGGGGGC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
635 CCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
17388433 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
700 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
*
17388498 TTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
765 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
*
17388563 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGAT
830 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGCATGCCAACAAAAATACAAGGAT
* * * * * *
17388628 AATGTCTATCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGCAAA
1 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAA
* * * * * *
17388693 AGGTTTAAAAAATCGTGAAAAAAAGAAAACGAGTCGTCTTGCCATCAAACTTCACCTGAAGGCTT
66 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *
17388758 GAGGGACCATTGTATGAATTTACAAGCCATAAAAATCGCATTGGCATGCAGAAATATGAAGATGT
131 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
17388823 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
196 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * *
17388888 TGCCCTCCCGTCCGCTCGTTTTGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGAT
261 TGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
** * * * *
17388953 CAGATTGGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACATAGAGGGGGACCCGACCGATCCCC
326 CAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGACCGATCCCC
* * * *
17389018 GGCTTGCACATCCCGCCCCTCTGGCTGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAA
391 GGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAG
* * *
17389083 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCTAGTCTAAGATCGAACCGGAC
456 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
*
17389148 CGAGGGTTGCGGCAGCACATGCTGGGCTTCAGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGG
521 CGAGGGTTGCGGCAGCACATGCTGGGCTTCAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * *
17389213 CACCGTCGTCGAAGCATCGCCGGAGAGCCTGACCGGCGGCATTGGGGCTCTGTCGATCGGGGGGC
586 CACCGTCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGC
* *
17389278 CGGGGGGGTGTGCCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTAT
651 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
17389343 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
716 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * *
17389408 CAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATTGTCACAAAATCCTATACACT
781 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
17389473 TCGAGTTTTTAGCTGAATTTTGTTTTGCATGCCAACAAAAATACAAGGAT
846 TCGAGTTTTTAGCTGAATTTT-TTTTGCATGCCAACAAAAATACAAGGAT
* * **
17389523 CACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCAAAAAAATTTTAAAAAATCTTGAACCGCAAA
1 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAA
* *
17389588 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTGTTGCCATGAAACTTCACGTTAAGGCTT
66 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
***
17389653 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAATAGAAATATGAAGATGT
131 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * * *
17389718 GCTTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGTCGACGTAG
196 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
** *
17389783 TATCCGCCCGCCCGCTCGTTTTGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
261 TGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * ** * ** * * *
17389848 C-GAACCAGACCGAGGGTTGCGGCAGCTGGATCGGTAACATGCAGAGGGGGACCCGGCTGATCCT
326 CAG-ACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGACCGATCCC
* *
17389912 CGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCACCTGCACGCTCGTTTCGT-GG--G---T-
390 CGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTA
* * *
17389970 ----T---GA---C-TT---A----AAGCATACGGAGTTCATTCCTAGTATAAGATCAGACCGGA
455 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * * *
17390017 CCGAGGGTTGCGGTAGCACATGCTGGGC-TCGGCCAAGTGTTGTTGTCGCATTTTTCTTC-TCCG
520 CCGAGGGTTGCGGCAGCACATGCTGGGCTTCAG-CATGTGTTGGTGCCGCATTTTTCTTCGT-CG
** * ** * *
17390080 GGGCACCGTCACCGGAGCATCGTCGGAGAACCTGACCATCGGTATTGTGGTTCCGACGATCGGGG
583 GGGCACCGTCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGG
*
17390145 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTGGGCCCTTATATTGGCCCC
647 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
17390210 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTTGAGATTTTATAGGCTT
712 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA-TTTGAGATTTTACAGGTTT
* * * *
17390275 GCTGCCAGTAGCAATTAAAATGTCTGAAATAGGGACACCTTTTTCAAATGGTCACAAAATCTTGT
776 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
17390340 ACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
841 ACACTTCGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAACAAAAATACAAGGAT
* *
17390395 CACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAA
1 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAA
*
17390460 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
66 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
17390525 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
131 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * *
17390590 G-CTAAAACCCATCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTA
196 GCCT-AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* *
17390654 GTGCCCACCCGCTCGCCCGTCCGCCCGCTCATTTTGTCGGTTGGCTTAGGTATACGGAGTTCATT
260 GTG------C-C-CG--C--CCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * *** * *
17390719 CCCAGTCTAAGACCAGACCGGACTGAGGGTTACAATAGTAGCATCGACAGCACACAGAGGGGGAC
313 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGGGAC
* * * * * *
17390784 CCGACTGATCCCCGGCTTGCGCATCCTG-CCC-CT------CTG-GC-CCCGTACACTCATTTCA
378 CCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCG
* * *
17390839 TGGTTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
443 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
17390904 GATCGGACCAGACCGCGGGTTGCGGTAACACATGCTAGGC-TCGGGCATGTATTGGTGTCGCATT
508 GATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTC-AGCATGTGTTGGTGCCGCATT
* * * *
17390968 TTTCTTCGTTGGGGCATCGTCGTCGGAGCATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCC
572 TTTCTTCGTCGGGGCACCGTCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCC
* * *
17391033 GGCGATCGGGGGG-C-AGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTA
637 GACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
17391096 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
702 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
17391161 TACAGGTTTGCTGTCAGTAGCCATTAAAGTGT-TGAAATGGGGACACTTTTTTCAAATGGTCACA
767 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
*
17391225 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTATGCATGCCAACAAAAATACAAGGAT
832 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGCATGCCAACAAAAATACAAGGAT
* * * * *
17391288 AATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAA
1 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAA
* * * *
17391353 AGGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTT
66 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *
17391418 GAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
131 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
*
17391483 GCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
196 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * *
17391548 TGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGAT
261 TGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
** * *
17391613 CAGATTGGACTGAGGGTTGC-GCAGCAGGGATCAACAGCACACAGAGGGGGACCCGACCGATCCC
326 CAGACCGGACCGAGGGTTGCGGCAGCA-GGATCGACAGCACACAGAGGGGGACCCGACCGATCCC
* * *
17391677 CGGCTTGCACATCCCCGCCCCTCTGGCTGG-TGA-CACCCGTACGCTC-GTTCGT-GGTTGACCT
390 CGGCTTGCACAT-CCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGA-CT
* *
17391738 TAGGCATACGGAGTTTCATT-CCAGTCTAAG-ATACAGAGTTTCATTTCCAGTCTTAAGATC-GA
453 TAGGCATACGGAG-TTCATTCCCAGTCTAAGCATACGGAG-TTCATTCCCAGTC-TAAGATCGGA
* * **
17391800 CCAGACCGA-GGTTGCAACGACAGCACATGCTGGGCTGAAGCAT-TGTTGGTGCC-CATTTTTC-
515 CCGGACCGAGGGTTG---CGGCAGCACATGCTGGGCTTCAGCATGTGTTGGTGCCGCATTTTTCT
* * * * * *
17391861 TCGCCGGCGTAGCACCGTCGTCGAAGCATCGCCGGAGAGCCTGACCGGTTGGCATT-GGGCTCTG
577 TCGTCGG-G--GCACCGTCGTCGGAGCATCGCCGGAGAACCTGACCGG-CGGCATTGGGGTTCCG
* *
17391925 TCGATC-GGGGGCCGGGGGGGTGTGC-CACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTAT
638 ACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * *
17391988 GTTGGCCCCCTATCCCTCATCAAATCTCAAGAACTCACACCCCCTTATAAGCAGCATTTGAGATT
703 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA-AAG-AGCATTTGAGATT
*
17392053 TTACAGG-TTG-TGCCAGTAGCCATTTAAAGTGTCTGAAATGGGGGACACCCTTTTTTTCAAATT
766 TTACAGGTTTGCTGCCAGTAGCCA-TTAAAGTGTCTGAAAT-GGGGACA--C-TTTTTTCAAATG
* * *
17392116 GTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATATA
826 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTTGCATGCCAACAAAAATACA
*
17392181 AAGAT
890 AGGAT
* * * * *
17392186 CACGTCTACCAAGTTTGGGGCCAAAACT-CTTCCAAAAAAATTTAAAAAAATCCTGAACCACGAA
1 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAA
*
17392250 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTT
66 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
**
17392315 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
131 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* *
17392380 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAG
196 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * * *
17392445 TGCCCGCCCGCCCTCTTGCCCGATTGTTTCGTCGGTTGGTTTAGGTATACGGAGTTCATTCCCAC
261 TGCCCGCCCG-CC-C--GCTCG--T-TTT-GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * * * *
17392510 TGTAAGATCAGACTGGACCGAGGGTTGCGGCAGTAGGATTGACAGTACGCAGAGGGGGATCCG-C
318 TCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGAC
* * ** * * *
17392574 CAATCCCTGGCTTGTGCATCCCGCCACTCTGGCCGACTGAGCACCCACACGCTCATTTCGTGGGT
383 CGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGT
* * * * *
17392639 TAACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAACATCG
448 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * *
17392704 GATCGGACCGAGGGTTACGGCAGCACATGCTGGGC-TCGGGCATGTGCTGGTGCTGCATTTTTCT
513 GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTC-AGCATGTGTTGGTGCCGCATTTTTCT
* * * * *
17392768 TCGTTGGGGCA-------C----CATCGCCGGAGAACATGATCGGCGACATTGGGGTTCCG-GGA
577 TCGTCGGGGCACCGTCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG-
* * *
17392821 ATCGGGGGGGCCGGGGGTGGTGTGCGCACATGATGTGGGATGGGTGCTAGTACTTGGCTCTTATA
641 ATC-GGGGGGCCGGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
17392886 TTGGCCCCCTATCCCT-ATCAAACCTCGAGAAC-CTACA-CCCCTTAAAGAGCATTTGAGATTTT
704 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC-ACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
17392948 ACAGGTTTGCTACCGGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
768 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
17393013 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
833 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAACAAAAATACAAGGAT
* * ** * **
17393076 CACATCTACCAGGTTTGGGGCCAAAACAGCTTCGGAAAAAATTTTAAAAAATCTTGAACCGCAAA
1 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAA
* * *
17393141 AAGTTTCAAAAATCGTGAAAAATAGAGAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
66 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
*
17393206 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-TCACAGAAATATGAAGATG
131 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-GCAGAAATATGAAGATG
* * * * * * *
17393270 TGCCAAAACCCACCTACCTCCTTATCGATCCATGACTTGCGCATCTCGTCTCTCTGGCCGGCTTA
195 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* * * *
17393335 GTGCCCGCCCACCCGCCTGCCCGCTCGTTTCGTCGGTTGCCTTAGGCATGCGGAGTTCATTCCTA
260 GTGCCCG------C-CC-GCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * ** ** *
17393400 GTCTAAGATTAGACCAGACCGAGGGTTGCTGG-AGCAGGATCGGTAGCATGCAGAGGGGAACCCG
317 GTCTAAGATCAGACCGGACCGAGGGTTGC-GGCAGCAGGATCGACAGCACACAGAGGGGGACCCG
* * * * * *
17393464 ATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCAGTTGAG-AGCCCGCACGCTCATTTCTTG
381 ACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCA-CCCGCACGCTCATTTCGTG
* * *
17393528 GGTTGACTTAGGCATACGAAGTTCATTCCCGGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGA
445 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * ** *
17393593 TCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTT-AGGCATGTGCTAGTGTTGTTAGTT
510 TCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTCA-GCATGTGTTGGTGCCG-CA-TT
* * * * **
17393657 TTTCATCATCGGTGCACCGTCGTTCGGAGCATCACCGGAGAACCTGACCGATGGCA-TGGGGTTC
572 TTTCTTCGTCGGGGCACCGTCG-TCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTC
* * *
17393721 TGACGATCGGGGGGTCGGGGGGGTGCG-GCACATTTGATGTGCGATGGGTGCTGGTACTTGGCCC
636 CGACGATCGGGGGGCCGGGGGGGTGTGCGCACA--TGATGTGCGATGGGTGCTGGTACTTGGCCC
* * *
17393785 TTATATTGG--CCCTCTCCCTC-TCAAACCTCGAGAAACTCACACCCTCTTAAAGATCATTTGAG
699 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAG-AACTCACACCCCCTTAAAGAGCATTTGAG
* * *
17393847 ATTTTACAGG-TTGCTTCTAGTAGCCATTAAA-TTTCTGAAAT-GGGACACTTTTTTCCAAAAT-
763 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT-C-AAATG
* * *
17393908 GTCACAAAATCTTGTACACTTCGCGTTTTTAGCTTGAATGTTTTGTGCATGCCAA-AAAAATACA
826 GTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TGAATTTTTTTTGCATGCCAACAAAAATACA
17393972 AGGAT
890 AGGAT
* * * **
17393977 CACCGTCTTACCAAGTTTGGTGCAAAAAAAATGCCTTTCAAAAAAAAATTTTAAAAAAT--CGAA
1 CA-CGTC-TACCAAGTTTGGGGC--CAAAACT-CC-TTC-CGAAAAAATTTTAAAAAATCCCGAA
* * * * * * *
17394040 TCGTAAAAAGTTTCAAAAATTCTTGAAAAATGAGAAAACGCGTCATCCTGCCATGAAATTTCACG
59 CCGCAAAAAGTTTCAAAAA-TCATGAAAAAT-AGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
17394105 TGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAGATA
122 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * * * *
17394170 TGAAGATGTCCCTAAACCGACCTACCATCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTAG
187 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * * *
17394235 TCGGTGTAGTGCCTGCCAGCCCGCCCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCA
252 CCGGCGTAGTGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * *** *
17394300 GTCTAAGATCAGACTGGACTGAGGGTTGCGGCACCAGGATCGGCAGCGTGCAGAGGTGGACCCGA
317 GTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGA
* * * * * *
17394365 TCGATCCCCGGCTTGTA-AGTCCTGCCCCTCTGGCCGGCTGAACGCACGCACGCTCATTTCGTGG
382 CCGATCCCCGGCTTGCACA-TCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGG
* ** *
17394429 GTTGACTTAGGCATACAGAGTTCATTCTAAGTCTAAGCATACGGAGTGCATTCCCAGTCTAAGAT
446 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
17394494 TGGACCAGACCAAGGGTTACGGCAACACATGCTGGGCT
511 CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
17394532 CGGGTGTGGG
Statistics
Matches: 5951, Mismatches: 668, Indels: 402
0.85 0.10 0.06
Matches are distributed among these distances:
869 4 0.00
870 136 0.02
871 113 0.02
872 365 0.06
874 14 0.00
875 3 0.00
876 3 0.00
877 3 0.00
878 1 0.00
879 1 0.00
880 6 0.00
881 116 0.02
882 6 0.00
883 7 0.00
884 117 0.02
885 4 0.00
886 1 0.00
887 1 0.00
888 23 0.00
889 70 0.01
890 130 0.02
891 451 0.08
892 201 0.03
893 680 0.11
894 323 0.05
895 494 0.08
896 126 0.02
897 322 0.05
898 68 0.01
899 143 0.02
900 238 0.04
901 36 0.01
902 83 0.01
903 70 0.01
904 360 0.06
905 153 0.03
906 309 0.05
907 37 0.01
908 214 0.04
909 1 0.00
916 1 0.00
918 2 0.00
919 3 0.00
920 2 0.00
921 4 0.00
922 287 0.05
923 156 0.03
924 51 0.01
926 12 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (894 bp):
CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAA
AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
TGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
CAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGACCGATCCCC
GGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAG
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
CGAGGGTTGCGGCAGCACATGCTGGGCTTCAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGG
CACCGTCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGC
CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTTGCATGCCAACAAAAATACAAGGAT
Found at i:17390884 original size:26 final size:26
Alignment explanation
Indices: 17390854--17390904 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17390844 TGACTTAGGT
*
17390854 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
17390880 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
17390905 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:17391771 original size:25 final size:27
Alignment explanation
Indices: 17391743--17391796 Score: 85
Period size: 25 Copynumber: 2.1 Consensus size: 27
17391733 GACCTTAGGC
*
17391743 ATACGGAGTTTCA-TTCCAGTC-TAAG
1 ATACAGAGTTTCATTTCCAGTCTTAAG
17391768 ATACAGAGTTTCATTTCCAGTCTTAAG
1 ATACAGAGTTTCATTTCCAGTCTTAAG
17391795 AT
1 AT
17391797 CGACCAGACC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 12 0.46
26 8 0.31
27 6 0.23
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.35
Consensus pattern (27 bp):
ATACAGAGTTTCATTTCCAGTCTTAAG
Found at i:17392394 original size:897 final size:893
Alignment explanation
Indices: 17389977--17394535 Score: 5548
Period size: 891 Copynumber: 5.1 Consensus size: 893
17389967 GGTTGACTTA
* * * * * **
17389977 AAGCATACGGAGTTCATTCCTAGTATAAGATCAGACCGGACCGAGGGTTGCGGTAGCACATGCTG
1 AAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTG
* * * ** *
17390042 GGCTCGGCCAAGTGTTGTTGTCGCATTTTTCTTC-TCCGGGGCACCGTCACCGGAGCATCGTCGG
66 GGCTCGGGCATGTGTTGGTG-CGCATTTTTCTTCGT-CGGGGCACCGTCGTCGGAGCATCGCCGG
* *
17390106 AGAACCTGACC-ATCGGTATTGTGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGA
129 AGAACCTGACCGA-CGGCATTGGGGTTCCG-CGATC-GGGGGGCCGGGGGGGTGTGCGCACATGA
*
17390170 TGTGCGATGGGTGCTGGTACTGGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
191 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * *
17390235 TCACACCCCCTTAAAGAGCATTTTGAGATTTTATAGGCTTGCTGCCAGTAGCAATTAAAATGTCT
256 TCACACCCCCTTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
17390300 GAAATAGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
320 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
17390365 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCG
385 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* *
17390430 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
450 AAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
17390495 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
17390560 TGGCATTGGCATGCAGAAATATGAAGATGTG-CTAAAACCCATCTACCACCCTATCGATCCACGA
580 TGGCATTGGCATGCAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGA
* * * *
17390624 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCTCGCCCGTCCGCCCGCTCATTTT
644 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG------C-C-CG-CC-TCTGCCCGCTCGTTTC
* * * * **
17390689 GTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACTGAGGGTTACAA
699 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGG
* * * * * *
17390754 TAGTAGCATCGACAGCACACAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCTGCCCCTCT
764 CAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * *
17390819 -----G-G-C-CCCGTACACTCATTTCATGGTTTGACTTAGGTATACGGAGTTCATTCCCAGTCT
829 GGCCGGTGACACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* ** *
17390876 AAGCATAC-GAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGCGGGTTGCGGTAACACATGCT
1 AAGCATACAG-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCT
* * * * *
17390940 AGGCTCGGGCATGTATTGGTGTCGCATTTTTCTTCGTTGGGGCATCGTCGTCGGAGCATCGCCGA
65 GGGCTCGGGCATGTGTTGGTG-CGCATTTTTCTTCGTCGGGGCACCGTCGTCGGAGCATCGCCGG
*
17391005 AGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGG-C-AGGGGGTGTGCGCACATGATG
129 AGAACCTGACCGACGGCATTGGGGTTCC-GCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATG
*
17391068 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
17391133 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGT-TGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
17391197 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
17391261 TATGCATGCCAACAAAAATACAAGGATAATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
17391326 AAATTTTAAAAAAT-CTCGAACCGTAAAAGGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGT
453 AAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
17391390 CTTGCCATCAAACTTCACGTGAAGGCTTGAGGGACCGTTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
17391455 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
17391520 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CTC-GCCCGCTCGTTTCGTCGGTTGGCTTA
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTCTGCCCGCTCGTTTCGTCGGTTGGCTTA
* * *
17391583 GGCATACGGAGTTCATTTCCAGTCTAAGATCAGATTGGACTGAGGGTTGC-GCAGCAGGGATCAA
712 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCA-GGATCGA
* * *
17391647 CAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCCGCCCCTCTGGCTGGTGACA
776 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT-CCCGCCCCTCTGGCCGGTGACA
* *
17391712 CCCGTACGCTC-GTTCGT-GGTTGACCTTAGGCATACGGAGTTTCATT-CCAGTCT
840 CCCGCACGCTCATTTCGTGGGTTGA-CTTAGGCATACGGAG-TTCATTCCCAGTCT
*
17391765 AAG-ATACAGAGTTTCATTTCCAGTCTTAAGATC-GACCAGACCGA-GGTTGCAACGACAGCACA
1 AAGCATACAGAG-TTCATTCCCAGTC-TAAGATCGGACCAGACCGAGGGTTG---CGACAGCACA
* * * *
17391827 TGCTGGGCT-GAAGCAT-TGTTGGTGCCCATTTTTC-TCGCCGGCGTAGCACCGTCGTCGAAGCA
61 TGCTGGGCTCG-GGCATGTGTTGGTGCGCATTTTTCTTCGTCGG-G--GCACCGTCGTCGGAGCA
* ** * *
17391889 TCGCCGGAGAGCCTGACCGGTTGGCATT-GGGCTCTGTCGATC-GGGGGCCGGGGGGGTGTGC-C
122 TCGCCGGAGAACCTGACC-GACGGCATTGGGGTTCCG-CGATCGGGGGGCCGGGGGGGTGTGCGC
* * *
17391951 ACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAATCTC
185 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
17392016 AAGAACTCACACCCCCTTATAAGCAGCATTTGAGATTTTACAGG-TTG-TGCCAGTAGCCATTTA
250 GAGAACTCACACCCCCTTA-AAG-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TTA
* * *
17392079 AAGTGTCTGAAATGGGGGACACCCTTTTTTTCAAATTGTCACAAAATCCTATACACTTCGAGTTT
312 AAGTGTCTGAAAT-GGGGACA--C-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
17392144 TTAGCTGAATTTTTTTTTGCATGCCAACAAAAATATAAAGATCACGTCTACCAAGTTTGGGGCCA
373 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * *
17392209 AAACT-CTTCCAAAAAAATTTAAAAAAATCCTGAACCACGAAAAGTTTCAAAAATCATGAAAAAT
438 AAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
*
17392273 AGAAAACGAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
503 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
**
17392338 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
568 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * *
17392403 TCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCTCTTGCCCGA
633 TCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCG-CCTC-TGCCCGC
* * * * * *
17392468 TTGTTTCGTCGGTTGGTTTAGGTATACGGAGTTCATTCCCACTGTAAGATCAGACTGGACCGAGG
692 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGG
* * * * * * *
17392533 GTTGCGGCAGTAGGATTGACAGTACGCAGAGGGGGATCCG-CCAATCCCTGGCTTGTGCATCCCG
757 GTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG
* * * * *
17392597 CCACTCTGGCCGACTGAGCACCCACACGCTCATTTCGTGGGTTAACTTAGGCATATGGAGTTCAT
822 CCCCTCTGGCCG-GTGA-CACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
17392662 TCCCAGTCT
885 TCCCAGTCT
* * * * * *
17392671 AAGCATACAGAGTTCATTCCTAGTCTAACATCGGATCGGACCGAGGGTTACGGCAGCACATGCTG
1 AAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTG
* *
17392736 GGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTTGGGGCA-------C----CATCGCCGGA
66 GGCTCGGGCATGTGTTGGTGC-GCATTTTTCTTCGTCGGGGCACCGTCGTCGGAGCATCGCCGGA
* * * * *
17392790 GAACATGATCGGCGACATTGGGGTTCCGGGAATCGGGGGGGCCGGGGGTGGTGTGCGCACATGAT
130 GAACCTGACCGACGGCATTGGGGTTCCGCG-ATC-GGGGGGCCGGGGG-GGTGTGCGCACATGAT
* * *
17392855 GTGGGATGGGTGCTAGTACTTGGCTCTTATATTGGCCCCCTATCCCT-ATCAAACCTCGAGAAC-
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
17392918 CTACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCGGTAGCTATTAAAGTGTCTG
257 C-ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
17392982 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * ** *
17393047 TTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAGGTTTGGGGCCAAAACAGCTTCGGA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * *
17393112 AAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAGAACTAGTCG
451 AAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
17393177 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
17393242 GGCATTGGC-TCACAGAAATATGAAGATGTGCCAAAACCCACCTACCTCCTTATCGATCCATGAC
581 GGCATTGGCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGAC
* * *
17393306 TTGCGCATCTCGTCTCTCTGGCCGGCTTAGTGCCCGCCCACCCGCCTGCCCGCTCGTTTCGTCGG
645 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-----CC-TCTGCCCGCTCGTTTCGTCGG
* * * * ** *
17393371 TTGCCTTAGGCATGCGGAGTTCATTCCTAGTCTAAGATTAGACCAGACCGAGGGTTGCTGG-AGC
704 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGC-GGCAGC
** * * * *
17393435 AGGATCGGTAGCATGCAGAGGGGAACCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCC
768 AGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * *
17393500 AGTTGAGAGCCCGCACGCTCATTTCTTGGGTTGACTTAGGCATACGAAGTTCATTCCCGGTCT
833 -GGTGACA-CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * *
17393563 AAGCAAACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTG
1 AAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTG
** * * * * * * * *
17393628 GGCTTAGGCATGTGCTAGTGTTGTTAGTTTTTCATCATCGGTGCACCGTCGTTCGGAGCATCACC
66 GGCTCGGGCATGTGTTGGTG-CG-CA-TTTTTCTTCGTCGGGGCACCGTCG-TCGGAGCATCGCC
* * * *
17393693 GGAGAACCTGACCGATGGCA-TGGGGTTCTGACGATCGGGGGGTCGGGGGGGTGCG-GCACATTT
127 GGAGAACCTGACCGACGGCATTGGGGTTCCG-CGATCGGGGGGCCGGGGGGGTGTGCGCACA--T
*
17393756 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG--CCCTCTCCCTC-TCAAACCTCGAGA
189 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG-
* * * * *
17393818 AACTCACACCCTCTTAAAGATCATTTGAGATTTTACAGG-TTGCTTCTAGTAGCCATTAAA-TTT
253 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
17393881 CTGAAAT-GGGACACTTTTTTCCAAAAT-GTCACAAAATCTTGTACACTTCGCGTTTTTAGCTTG
318 CTGAAATGGGGACACTTTTTT-C-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TG
* * *
17393944 AA-TGTTTTGTGCATGCCAA-AAAAATACAAGGATCACCGTCTTACCAAGTTTGGTGCAAAAAAA
380 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA-CGTC-TACCAAGTTTGGGGC--CAAAA
* ** * * *
17394007 ATGCCTTTCAAAAAAAAATTTTAAAAAAT-C-GAATCGTAAAAAGTTTCAAAAATTCTTGAAAAA
441 CT-CC-TTC-CGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAA-TCGTGAAAAA
* * * * *
17394070 TGAGAAAACGCGTCATCCTGCCATGAAATTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTT
502 T-AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * *
17394135 ACAAGCCATAAAAATGGCATTGGCATGCAGAGATATGAAGATGTCCCTAAACCGACCTACCATCC
566 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * * * *
17394200 TATCGATCCACGGCTTGCGCATCCTGTCTCTCTAGTCGGTGTAGTGCCTG-C-CAGCCCGCCCGT
631 TATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTCTGCCCGCTCGT
*
17394263 TTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTG
696 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTG
* * ** * * ** *
17394328 CGGCACCAGGATCGGCAGCGTGCAGAGGTGGACCCGATCGATCCCCGGCTTG-TAAGTCCTGCCC
761 CGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA-TCCCGCCC
*
17394392 CTCTGGCCGGCTGA-ACGCACGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC
825 CTCTGGCCGG-TGACAC-C-CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
**
17394456 TAAGTCT
887 CCAGTCT
* * * * * * *
17394463 AAGCATACGGAGTGCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTACGGCAACACATGCTG
1 AAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTG
17394528 GGCTCGGG
66 GGCTCGGG
17394536 TGTGGGGGCG
Statistics
Matches: 3189, Mismatches: 348, Indels: 245
0.84 0.09 0.06
Matches are distributed among these distances:
880 3 0.00
881 113 0.04
882 12 0.00
883 1 0.00
885 2 0.00
886 1 0.00
887 7 0.00
888 22 0.01
889 62 0.02
890 138 0.04
891 459 0.14
892 200 0.06
893 356 0.11
894 105 0.03
895 66 0.02
896 126 0.04
897 310 0.10
898 65 0.02
899 143 0.04
900 239 0.07
901 34 0.01
902 89 0.03
903 66 0.02
904 121 0.04
905 138 0.04
906 106 0.03
907 35 0.01
908 169 0.05
909 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (893 bp):
AAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTG
GGCTCGGGCATGTGTTGGTGCGCATTTTTCTTCGTCGGGGCACCGTCGTCGGAGCATCGCCGGAG
AACCTGACCGACGGCATTGGGGTTCCGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCGACAGCA
CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTGACACCCGCA
CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
Found at i:17394475 original size:26 final size:26
Alignment explanation
Indices: 17394439--17394491 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17394429 GTTGACTTAG
* *
17394439 GCATACAGAGTTCATTCTAAGTCTAA
1 GCATACAGAGTGCATTCCAAGTCTAA
* *
17394465 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACAGAGTGCATTCCAAGTCTAA
17394491 G
1 G
17394492 ATTGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTGCATTCCAAGTCTAA
Found at i:17396157 original size:25 final size:26
Alignment explanation
Indices: 17396123--17396174 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
17396113 GTTCACTTAG
* *
17396123 GCATGCGGAGTTCATTGCCAGT-TAA
1 GCATACGGAGTTCATTCCCAGTGTAA
17396148 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTGTAA
17396174 G
1 G
17396175 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTGTAA
Found at i:17397052 original size:901 final size:894
Alignment explanation
Indices: 17395249--17397408 Score: 3185
Period size: 901 Copynumber: 2.4 Consensus size: 894
17395239 GTTGAATTAG
*
17395249 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG-ACCGAGGGTTGTGGCAGCACATGCTAGG
*
17395314 CTCGGGCATGTGCTGGTGCGGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGA
** * * * *
17395379 ACCTGACCGGCGGCATTGGGGTTC-GACGATCGGTGGGGCCGGGGGGTGTGTGCTCATGATTTGT
130 ACCTGACCGGCGGCATTGGGGTTCTGACGATCGAAGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
17395443 GATGGGTGCTGGTACTTGCCCCTTATATTGGCCCCCTATCCCTCA-CCAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
17395507 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
17395572 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
17395637 TCATGCCAAAAAAAATACAAGGATCACGTTTACCAAGTTT-GGGCCAAAACTCCTTTCAAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCAAAAAAA
* *
17395701 TTTTAAAAAATCCTGAACCATAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATCCCGAACCATAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
**
17395766 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
17395831 TGGCACGAAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
584 TGGCAC-AAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * *
17395896 ATCCCGTCTCTCTGGCTGGCATAGTGCCCGCCTGCCCGCCTGCGTGCTCGTTTCATCAGTTGGCT
648 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCAGTTGGCT
* *
17395961 TAGGCATACGGAGTTCGTTCCCAGTCTAAGATTGGACCAAACTGAGGGTTGCGGCAGCAGGATTG
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAGCAGGATTG
* * * ** *
17396026 GCAGCACGCAGAGGGGGACCCGACTGATCCCCGACTTACGCATCCCACCCTTCCGGTTGGCTAAG
778 GCAGCACGCAGAGGGGGACCCGAC-GATCCCCG-CTTGCGCATCCCGCCCTTCTGG-CCGCTGAG
* *
17396091 CACCCGCACGCTCATTTTATGGGTTCACTTAGGCATGCGGAGTTCATTGCCAGT-TAA
840 CACCCGCACGCTCATTCT-TGGGTTGACTTAGGCAT-CGGAGTTCATT-CCAGTGTAA
* * *
17396148 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGTGGCAGCATATGCT-TG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTGTGGCAGCACATGCTAGG
* *
17396212 CATAGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCGTCGGAG
65 C-TCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAG
* * * *
17396277 AACCTGGCCGGC-GCATTGGGGTTCTGGCGATCGAAGGGGCCGGGGGGTGTGCACAAATGATGTG
129 AACCTGACCGGCGGCATTGGGGTTCTGACGATCGAAGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
17396341 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
17396406 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
17396471 GGGGACACGTTTTTCAAATGATCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTGTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
17396536 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTT-CAAAAAA
* *
17396601 ATTTTAAAAAATCCCAAACC-TCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
453 ATTTTAAAAAATCCCGAACCAT-AAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
**
17396665 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAAAGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
17396730 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGT
582 ATTGGCACA-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
17396795 GCATCCCGTCTATCTGGCCGACGTAGTGCCCGCCCGCCAGCCCGCCTGCTCGTTAT-GTCGGTTG
646 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTT-TCGTCAGTTG
* * * * * *
17396859 GCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCGGACCGGACTGAAGGTTGCAGCAGCAGGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAGCAGGA
* * * *
17396924 TTGGCAGCACGCAGAGGGGAACCCGATCGATCCCCGCTTGCGCATCCTGCCCCTCTGGCCGATGG
775 TTGGCAGCACGCAGAGGGGGACCCGA-CGATCCCCGCTTGCGCATCCCGCCCTTCTGGCCGCT-G
17396989 AGCACCCGCACGCTCATTCTGTGGGTTGACTTAGGCATACGGAGTTCATTACCAGTGTAA
838 AGCACCCGCACGCTCATTCT-TGGGTTGACTTAGGCAT-CGGAGTTCATT-CCAGTGTAA
* * * * *
17397049 GCATACGGAGTTCATTCCCAGTCCAAGATCGGATCGGACCGAGAGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGACCGAGGGTTGTGGCAGCACATGCTAGG
*
17397114 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATC-ACTGGAG
65 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTC-GGAG
* * *
17397178 AACCTGACTGGACGGCATTGGGGTTCTGACGATC-AGGGGGGCCGGGTGGTGTGCGCACATGATG
129 AACCTGACCGG-CGGCATTGGGGTTCTGACGATCGA-AGGGGCCGGGGGGTGTGCGCACATGATG
* *
17397242 TGCGATGGGTGCTGGTACTGGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCACGA-AACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
17397306 ACACCCCCTT-AA-AGCATTTTGAGATTTTATAAGCTTGCTGCCAGTAGCAATTAAAGTATCTGA
257 ACACCCCCTTAAAGAGCA-TTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
17397369 AATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTAC
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
17397409 GTCTACCAAG
Statistics
Matches: 1138, Mismatches: 104, Indels: 36
0.89 0.08 0.03
Matches are distributed among these distances:
898 14 0.01
899 204 0.18
900 257 0.23
901 543 0.48
902 22 0.02
903 98 0.09
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGACCGAGGGTTGTGGCAGCACATGCTAGGC
TCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAA
CCTGACCGGCGGCATTGGGGTTCTGACGATCGAAGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCAAAAAAATT
TTAAAAAATCCCGAACCATAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCAGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAGCAGGATTGGCA
GCACGCAGAGGGGGACCCGACGATCCCCGCTTGCGCATCCCGCCCTTCTGGCCGCTGAGCACCCG
CACGCTCATTCTTGGGTTGACTTAGGCATCGGAGTTCATTCCAGTGTAA
Found at i:17406148 original size:22 final size:22
Alignment explanation
Indices: 17406100--17406151 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
17406090 TAAAGAGCAA
*
17406100 GCTAAAATAATAGTCAAATTGC
1 GCTAAAATAATAGTCAAATTAC
* *
17406122 ACTAAAATAATAGTCAAATTAT
1 GCTAAAATAATAGTCAAATTAC
17406144 GCTAAAAT
1 GCTAAAAT
17406152 TAAGCATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.29
Consensus pattern (22 bp):
GCTAAAATAATAGTCAAATTAC
Found at i:17406799 original size:26 final size:26
Alignment explanation
Indices: 17406770--17406835 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 26
17406760 TTGCTTTTGC
* **
17406770 TTTTTCTTTTTTTTTTCTTGT-GGTTT
1 TTTTTCTTTTTTTTTT-TTATAACTTT
*
17406796 TTTTTCTTTTTCTTTTTTATAACTTT
1 TTTTTCTTTTTTTTTTTTATAACTTT
17406822 TTTTTCTTTTTTTT
1 TTTTTCTTTTTTTT
17406836 CCAATTTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
25 3 0.09
26 31 0.91
ACGTcount: A:0.05, C:0.09, G:0.05, T:0.82
Consensus pattern (26 bp):
TTTTTCTTTTTTTTTTTTATAACTTT
Found at i:17432953 original size:18 final size:18
Alignment explanation
Indices: 17432930--17432965 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
17432920 AGAGGAAAAT
17432930 AAAGTAAAAGAAGGAAAG
1 AAAGTAAAAGAAGGAAAG
17432948 AAAGTAAAAGAAGGAAAG
1 AAAGTAAAAGAAGGAAAG
17432966 GTTTTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.28, T:0.06
Consensus pattern (18 bp):
AAAGTAAAAGAAGGAAAG
Found at i:17433712 original size:124 final size:124
Alignment explanation
Indices: 17433550--17433799 Score: 464
Period size: 124 Copynumber: 2.0 Consensus size: 124
17433540 TTAGTTATGT
*
17433550 TCAACTAAAGCAATATAAATAAATTAGTACATGCTGTCAAATTACAATTATATATAAGTATAAAA
1 TCAACTAAAGCAATATAAATAAATTAATACATGCTGTCAAATTACAATTATATATAAGTATAAAA
17433615 CTGTACTTCACCTCTTAATATGTCACCTTTGTTTTTACTATAACATTTACATGTTTGTG
66 CTGTACTTCACCTCTTAATATGTCACCTTTGTTTTTACTATAACATTTACATGTTTGTG
*
17433674 TCAACTAAAGCAATATAAATAAATTAATACTTGCTGTCAAATTACAATTATATATAAGTATAAAA
1 TCAACTAAAGCAATATAAATAAATTAATACATGCTGTCAAATTACAATTATATATAAGTATAAAA
* *
17433739 CTGTACTTCACCTTTTAATATGTCACCTTTGTTTTTATTATAACATTTACATGTTTGTG
66 CTGTACTTCACCTCTTAATATGTCACCTTTGTTTTTACTATAACATTTACATGTTTGTG
17433798 TC
1 TC
17433800 CACGTATTCC
Statistics
Matches: 122, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
124 122 1.00
ACGTcount: A:0.37, C:0.15, G:0.08, T:0.40
Consensus pattern (124 bp):
TCAACTAAAGCAATATAAATAAATTAATACATGCTGTCAAATTACAATTATATATAAGTATAAAA
CTGTACTTCACCTCTTAATATGTCACCTTTGTTTTTACTATAACATTTACATGTTTGTG
Found at i:17435083 original size:23 final size:23
Alignment explanation
Indices: 17435057--17435102 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
17435047 GTTTCTTAGA
*
17435057 GTGCACTTACAATTTTATAGTGG
1 GTGCAATTACAATTTTATAGTGG
*
17435080 GTGCAATTATAATTTTATAGTGG
1 GTGCAATTACAATTTTATAGTGG
17435103 TAAAAATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (23 bp):
GTGCAATTACAATTTTATAGTGG
Found at i:17435110 original size:23 final size:23
Alignment explanation
Indices: 17435067--17435116 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
17435057 GTGCACTTAC
**
17435067 AATTTTATAGTGGGTGCAATTAT
1 AATTTTATAGTGGGTAAAATTAT
17435090 AATTTTATAGT-GGTAAAAATTAT
1 AATTTTATAGTGGGT-AAAATTAT
17435113 AATT
1 AATT
17435117 AATAGGTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 3 0.12
23 21 0.88
ACGTcount: A:0.38, C:0.02, G:0.16, T:0.44
Consensus pattern (23 bp):
AATTTTATAGTGGGTAAAATTAT
Found at i:17438347 original size:34 final size:34
Alignment explanation
Indices: 17438307--17438390 Score: 98
Period size: 33 Copynumber: 2.5 Consensus size: 34
17438297 TACATTAGCT
17438307 GCATTTGTATATGAAAAACGTCGCTATATTAACG
1 GCATTTGTATATGAAAAACGTCGCTATATTAACG
* * * * * *
17438341 GTATTTGTATCT-AAAAATGTTGTTATATTAGCG
1 GCATTTGTATATGAAAAACGTCGCTATATTAACG
*
17438374 GCATTTGTATTTGAAAA
1 GCATTTGTATATGAAAA
17438391 TTAACATTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
33 27 0.66
34 14 0.34
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (34 bp):
GCATTTGTATATGAAAAACGTCGCTATATTAACG
Found at i:17438391 original size:33 final size:33
Alignment explanation
Indices: 17438300--17438417 Score: 103
Period size: 34 Copynumber: 3.5 Consensus size: 33
17438290 ACACCACTAC
* * *
17438300 ATTAGCTGCATTTGTATATGAAAAACGTCGCTAT
1 ATTAGCGGCATTTGTATATG-AAAATGTCGTTAT
* * * * *
17438334 ATTAACGGTATTTGTATCTAAAAATGTTGTTAT
1 ATTAGCGGCATTTGTATATGAAAATGTCGTTAT
* *
17438367 ATTAGCGGCATTTGTATTTGAAAAT-TAACATTAT
1 ATTAGCGGCATTTGTATATGAAAATGT--CGTTAT
*
17438401 ATTAGCGGCGTTTGTAT
1 ATTAGCGGCATTTGTAT
17438418 CTTTGACACG
Statistics
Matches: 67, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
32 1 0.01
33 31 0.46
34 35 0.52
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (33 bp):
ATTAGCGGCATTTGTATATGAAAATGTCGTTAT
Found at i:17446715 original size:185 final size:186
Alignment explanation
Indices: 17446388--17447145 Score: 832
Period size: 187 Copynumber: 4.1 Consensus size: 186
17446378 AGACGGTTAA
* * * * * *
17446388 TGAAGGCATTTTTTTAGAATAAACGCGTTTAATAATTTT-TTTTAAAACTTTTTTAGATTATTAA
1 TGAAGGTATTTTTTTAGAACAAACGCCTTCAATAATTTTCTCTTAAAA-TTTTTTGGATTATTAA
* * * * * * * *
17446452 AGGTATCTT-TAAGTGAAAATCGCCTTTAATATTCCATAACTAAAATTTTAAAATAGTTAGTGAA
65 AGGCATATTCT-AGTGAAAAACACCTTCAATATTCCACAACTCAAATTTTAAAACAGTTAGTGAA
** *
17446516 --CGTATTTATTCTAGAAAAATTCGTTCACTAATTCCTTCTAATTTACATACATAATTAT
129 GGCGT-TTT-TTCTAGAAAAACGCCTTCACTAATTCCTTCTAATTTACATACATAATTAT
* *
17446574 TGAAGGTATTTTTTTAGAATAAACGCTTTCAATAATTTTCTCTTAAAA-TTTTTGGATTATTAAA
1 TGAAGGTATTTTTTTAGAACAAACGCCTTCAATAATTTTCTCTTAAAATTTTTTGGATTATTAAA
* * * * * * * *
17446638 GGCGTCTTTTAGTGAAAAACGCCTTCAATTTTACACAACTCAAATTTTAAAACATTTAGTGAATG
66 GGCATATTCTAGTGAAAAACACCTTCAATATTCCACAACTCAAATTTTAAAACAGTTAGTGAAGG
**
17446703 CGTTTTTTCTAGAAAAACGCCTTCACTAATTATTTCTAATTTACATACATAATTAT
131 CGTTTTTTCTAGAAAAACGCCTTCACTAATTCCTTCTAATTTACATACATAATTAT
* * *
17446759 TGAAGATATATTTTTAAGAACAAATGCCTTCAATAATTTTCTCTTAAAATTTTTTGGATTATTAA
1 TGAAGGTAT-TTTTTTAGAACAAACGCCTTCAATAATTTTCTCTTAAAATTTTTTGGATTATTAA
*** * *
17446824 AGATGTATTCTAGTGAAAAACACCTTCAATTTTTCACAACTCAAATTTTAAAAC-GTTTAGTGAA
65 AGGCATATTCTAGTGAAAAACACCTTCAATATTCCACAACTCAAATTTTAAAACAG-TTAGTGAA
* * **
17446888 GGCTTTTTTTTCTAGAAAAACGCCTTCACTAATTCTTTCTAATTTATTTACATAATTAT
129 GGC-GTTTTTTCTAGAAAAACGCCTTCACTAATTCCTTCTAATTTACATACATAATTAT
* * * * *
17446947 TGAAGGCATTTTTTGAGAACAAATGCCTTCAATAATTTCCTCTT-AATTTTTTTGGGATTATTAA
1 TGAAGGTATTTTTTTAGAACAAACGCCTTCAATAATTTTCTCTTAAAATTTTTT-GGATTATTAA
* * * * * **
17447011 ATGCATATTCTAATGAAAAATATCTTCAATATTCCACAACTTAAATTTTAAAATGGTTAGTGAAG
65 AGGCATATTCTAGTGAAAAACACCTTCAATATTCCACAACTCAAATTTTAAAACAGTTAGTGAAG
* * * **
17447076 GCATTTATTCTA-AAAAATGCCTTCACTAATTCCTT-TAAATTTTTATACATAATTAT
130 GCGTTTTTTCTAGAAAAACGCCTTCACTAATTCCTTCT-AATTTACATACATAATTAT
*
17447132 TGAATGTGATTTTT
1 TGAAGGT-ATTTTT
17447146 CACTTCAATT
Statistics
Matches: 499, Mismatches: 61, Indels: 24
0.85 0.10 0.04
Matches are distributed among these distances:
184 1 0.00
185 162 0.32
186 97 0.19
187 180 0.36
188 59 0.12
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (186 bp):
TGAAGGTATTTTTTTAGAACAAACGCCTTCAATAATTTTCTCTTAAAATTTTTTGGATTATTAAA
GGCATATTCTAGTGAAAAACACCTTCAATATTCCACAACTCAAATTTTAAAACAGTTAGTGAAGG
CGTTTTTTCTAGAAAAACGCCTTCACTAATTCCTTCTAATTTACATACATAATTAT
Found at i:17446949 original size:373 final size:372
Alignment explanation
Indices: 17446418--17447135 Score: 881
Period size: 373 Copynumber: 1.9 Consensus size: 372
17446408 AAACGCGTTT
* * * * *
17446418 AATAATTTTTTTTAAAACTTTTTTAGATTATTAAAGGTATCTTTAAGTGAAAATCGCCTTTAATA
1 AATAATTTTTCTTAAAACTTTTTTAGATTATTAAAGGTATCTCTAAGTGAAAAACACCTTCAATA
* ** *
17446483 TTCCATAACTAAAATTTTAAAATAGTTAGTGAACGTATTTATTCTAGAAAAATTCGTTCACTAAT
66 TTCCACAACTAAAATTTTAAAATAGTTAGTGAACGTATTTATTCTAGAAAAACGCCTTCACTAAT
* * * * *
17446548 TCCTTCTAATTTACATACATAATTATTGAAGGTATTTTTTTAGAATAAACGCTTTCAATAATTTT
131 TCCTTCTAATTTACATACATAATTATTGAAGGCATTTTTTGAGAACAAACGCCTTCAATAATTTC
* * * * * *
17446613 CTCTTAAAATTTTT-GGATTATTAAAGGCGTCTTTTAGTGAAAAACGCCTTCAATTTTACACAAC
196 CTCTTAAAATTTTTGGGATTATTAAAGGCATATTCTAATGAAAAACACCTTCAATATTACACAAC
* * * * *
17446677 TCAAATTTTAAAACATTTAGTGAATGCGTTTTTTCTAGAAAAACGCCTTCACTAATT-ATTTCTA
261 TCAAATTTTAAAACAGTTAGTGAAGGCATTTATTCTA-AAAAACGCCTTCACTAATTCATTT-AA
17446741 ATTTACATACATAATTATTGAAGATATATTTTTAAGAACAAATGCCTTC
324 ATTTACATACATAATTATTGAAGATATATTTTTAAGAACAAATGCCTTC
*
17446790 AATAATTTTCTCTTAAAA-TTTTTTGGATTATTAAAGATGTAT-TCT-AGTGAAAAACACCTTCA
1 AATAATTTT-TCTTAAAACTTTTTTAGATTATTAAAG--GTATCTCTAAGTGAAAAACACCTTCA
* * * * * * *
17446852 ATTTTTCACAACTCAAATTTTAAAA-CGTTTAGTGAAGGCTTTTTTTTCTAGAAAAACGCCTTCA
63 ATATTCCACAACTAAAATTTTAAAATAG-TTAGTGAACG-TATTTATTCTAGAAAAACGCCTTCA
* ** *
17446916 CTAATTCTTTCTAATTTATTTACATAATTATTGAAGGCATTTTTTGAGAACAAATGCCTTCAATA
126 CTAATTCCTTCTAATTTACATACATAATTATTGAAGGCATTTTTTGAGAACAAACGCCTTCAATA
** * * * *
17446981 ATTTCCTCTTAATTTTTTTGGGATTATTAAATGCATATTCTAATGAAAAATATCTTCAATATTCC
191 ATTTCCTCTTAAAATTTTTGGGATTATTAAAGGCATATTCTAATGAAAAACACCTTCAATATTAC
* ** * *
17447046 ACAACTTAAATTTTAAAATGGTTAGTGAAGGCATTTATTCTAAAAAATGCCTTCACTAATTCCTT
256 ACAACTCAAATTTTAAAACAGTTAGTGAAGGCATTTATTCTAAAAAACGCCTTCACTAATTCATT
**
17447111 TAAATTTTTATACATAATTATTGAA
321 TAAATTTACATACATAATTATTGAA
17447136 TGTGATTTTT
Statistics
Matches: 289, Mismatches: 50, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
371 1 0.00
372 70 0.24
373 141 0.49
374 77 0.27
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.42
Consensus pattern (372 bp):
AATAATTTTTCTTAAAACTTTTTTAGATTATTAAAGGTATCTCTAAGTGAAAAACACCTTCAATA
TTCCACAACTAAAATTTTAAAATAGTTAGTGAACGTATTTATTCTAGAAAAACGCCTTCACTAAT
TCCTTCTAATTTACATACATAATTATTGAAGGCATTTTTTGAGAACAAACGCCTTCAATAATTTC
CTCTTAAAATTTTTGGGATTATTAAAGGCATATTCTAATGAAAAACACCTTCAATATTACACAAC
TCAAATTTTAAAACAGTTAGTGAAGGCATTTATTCTAAAAAACGCCTTCACTAATTCATTTAAAT
TTACATACATAATTATTGAAGATATATTTTTAAGAACAAATGCCTTC
Found at i:17455278 original size:19 final size:19
Alignment explanation
Indices: 17455243--17455280 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
17455233 AAATTACTAA
*
17455243 AATTATTTTTATTTTAAAT
1 AATTATTTTTATATTAAAT
17455262 AATTATTTTGT-TATTAAAT
1 AATTATTTT-TATATTAAAT
17455281 GTTTAAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (19 bp):
AATTATTTTTATATTAAAT
Found at i:17455392 original size:23 final size:22
Alignment explanation
Indices: 17455366--17455421 Score: 71
Period size: 23 Copynumber: 2.6 Consensus size: 22
17455356 AATAATTTAG
* *
17455366 AAAATAATAATTATTTTTATATT
1 AAAATAATAATTATATTTAT-TC
17455389 AAAATAATAATT-TATTTATTC
1 AAAATAATAATTATATTTATTC
17455410 AAAATAA-AATTA
1 AAAATAATAATTA
17455422 AAAAAAATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 4 0.13
21 8 0.27
22 6 0.20
23 12 0.40
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.45
Consensus pattern (22 bp):
AAAATAATAATTATATTTATTC
Found at i:17455557 original size:7 final size:8
Alignment explanation
Indices: 17455538--17455571 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
17455528 TCTCAAAAGC
*
17455538 AAAAAGGA
1 AAAAAGAA
17455546 AAAAAGAAA
1 AAAAAG-AA
17455555 AAAAAGAA
1 AAAAAGAA
17455563 AAAAAGAA
1 AAAAAGAA
17455571 A
1 A
17455572 CAGGGGCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
8 17 0.71
9 7 0.29
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (8 bp):
AAAAAGAA
Found at i:17455560 original size:17 final size:17
Alignment explanation
Indices: 17455538--17455571 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
17455528 TCTCAAAAGC
*
17455538 AAAAAGGAAAAAAGAAA
1 AAAAAGAAAAAAAGAAA
17455555 AAAAAGAAAAAAAGAAA
1 AAAAAGAAAAAAAGAAA
17455572 CAGGGGCTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (17 bp):
AAAAAGAAAAAAAGAAA
Found at i:17464034 original size:18 final size:18
Alignment explanation
Indices: 17463985--17464027 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
17463975 ACATTGATTG
17463985 GGTGGAAAGTTGGATGAC
1 GGTGGAAAGTTGGATGAC
*
17464003 GGTGGAAAGTTGGATGAT
1 GGTGGAAAGTTGGATGAC
17464021 GGTGGAA
1 GGTGGAA
17464028 GCTTGGAGGC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.28, C:0.02, G:0.47, T:0.23
Consensus pattern (18 bp):
GGTGGAAAGTTGGATGAC
Found at i:17466968 original size:21 final size:21
Alignment explanation
Indices: 17466944--17466984 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
17466934 GTGTTCCTAA
17466944 CCAATAGATTAATAACTGACC
1 CCAATAGATTAATAACTGACC
*
17466965 CCAATATATTAATAACTGAC
1 CCAATAGATTAATAACTGAC
17466985 ATCACCATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.44, C:0.22, G:0.07, T:0.27
Consensus pattern (21 bp):
CCAATAGATTAATAACTGACC
Found at i:17473998 original size:34 final size:34
Alignment explanation
Indices: 17473942--17474054 Score: 120
Period size: 34 Copynumber: 3.3 Consensus size: 34
17473932 TAATATTTGG
*
17473942 AAATGCATTTTTGATAAGTCATAACACTTTTCGA
1 AAATGCATTTTTGAGAAGTCATAACACTTTTCGA
* * * * * *
17473976 AAATGAATTATTGAGAAATCATAATACTTATAGA
1 AAATGCATTTTTGAGAAGTCATAACACTTTTCGA
* *
17474010 AAATGCATTTTTGAGAAGCCATTACA-TTTCTCGA
1 AAATGCATTTTTGAGAAGTCATAACACTTT-TCGA
*
17474044 AAATGTATTTT
1 AAATGCATTTT
17474055 AAGAGAGTTA
Statistics
Matches: 62, Mismatches: 16, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
33 2 0.03
34 60 0.97
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (34 bp):
AAATGCATTTTTGAGAAGTCATAACACTTTTCGA
Found at i:17474790 original size:25 final size:26
Alignment explanation
Indices: 17474762--17474814 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 26
17474752 TTCATTACAC
17474762 TTATTTATAAATAA-TTTTAATAAAA
1 TTATTTATAAATAATTTTTAATAAAA
* * *
17474787 TTATTTTTTAATAATTTTTCATAAAA
1 TTATTTATAAATAATTTTTAATAAAA
17474813 TT
1 TT
17474815 TCAATTCTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (26 bp):
TTATTTATAAATAATTTTTAATAAAA
Found at i:17474812 original size:26 final size:26
Alignment explanation
Indices: 17474730--17474814 Score: 73
Period size: 26 Copynumber: 3.1 Consensus size: 26
17474720 TTTAAAATTT
*
17474730 ATTATTTTTAATAATAACTTTTTTCATTACA
1 ATTATTTTT--TAATAA--TTTTTCA-TAAA
* * * *
17474761 CTTATTTATAAATAA-TTTTAATAAA
1 ATTATTTTTTAATAATTTTTCATAAA
17474786 ATTATTTTTTAATAATTTTTCATAAA
1 ATTATTTTTTAATAATTTTTCATAAA
17474812 ATT
1 ATT
17474815 TCAATTCTAA
Statistics
Matches: 44, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
25 15 0.34
26 17 0.39
29 5 0.11
31 7 0.16
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (26 bp):
ATTATTTTTTAATAATTTTTCATAAA
Found at i:17474910 original size:34 final size:34
Alignment explanation
Indices: 17474828--17474919 Score: 114
Period size: 34 Copynumber: 2.7 Consensus size: 34
17474818 ATTCTAACAC
* *
17474828 TCTCGAAAATATATTTTCGAGAAGTGTTATAACT
1 TCTCGAAAATACATTTTTGAGAAGTGTTATAACT
* **
17474862 TTTCTG-AAATACATTTTTGAGAAGTGTTATGTCT
1 TCTC-GAAAATACATTTTTGAGAAGTGTTATAACT
*
17474896 TCTCGAAAAAACATTTTTGAGAAG
1 TCTCGAAAATACATTTTTGAGAAG
17474920 AATTATGGCT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
33 1 0.02
34 47 0.96
35 1 0.02
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (34 bp):
TCTCGAAAATACATTTTTGAGAAGTGTTATAACT
Found at i:17474938 original size:34 final size:34
Alignment explanation
Indices: 17474872--17474938 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 34
17474862 TTTCTGAAAT
** * *
17474872 ACATTTTTGAGAAGTGTTATGTCTTCTCGAAAAA
1 ACATTTTTGAGAAGAATTATGGCTTATCGAAAAA
*
17474906 ACATTTTTGAGAAGAATTATGGCTTATTGAAAA
1 ACATTTTTGAGAAGAATTATGGCTTATCGAAAA
17474939 TTTATTTTTG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.37
Consensus pattern (34 bp):
ACATTTTTGAGAAGAATTATGGCTTATCGAAAAA
Found at i:17479040 original size:18 final size:18
Alignment explanation
Indices: 17479019--17479083 Score: 58
Period size: 18 Copynumber: 3.3 Consensus size: 18
17479009 TCAAATCATC
*
17479019 AATCATGCAATAAATAGA
1 AATCATGCAATAAATAAA
17479037 AATCATGCAAATAATATAAA
1 AATCATGC-AATAA-ATAAA
* *
17479057 ACATACCATGCAATAAAGATA
1 A-AT--CATGCAATAAATAAA
17479078 AATCAT
1 AATCAT
17479084 ATTCATGCAA
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
18 11 0.28
19 5 0.13
20 7 0.18
21 6 0.15
22 5 0.13
23 5 0.13
ACGTcount: A:0.55, C:0.14, G:0.08, T:0.23
Consensus pattern (18 bp):
AATCATGCAATAAATAAA
Found at i:17479129 original size:25 final size:25
Alignment explanation
Indices: 17479039--17479161 Score: 95
Period size: 24 Copynumber: 5.2 Consensus size: 25
17479029 TAAATAGAAA
17479039 TCATGCAAATAAT-ATAAAA-CATA-
1 TCATGC-AATAATCATAAAATCATAT
* **
17479062 CCATGCAATAAAGAT-AAATCATAT
1 TCATGCAATAATCATAAAATCATAT
*
17479086 TCATGCAATAATCATAAAATTATA-
1 TCATGCAATAATCATAAAATCATAT
*
17479110 TCATGCAATCATCATGAAAA-CATA-
1 TCATGCAATAATCAT-AAAATCATAT
*
17479134 -CATGTAATAATCA-AACAATCATA-
1 TCATGCAATAATCATAA-AATCATAT
17479157 TCATG
1 TCATG
17479162 AAATTAACAA
Statistics
Matches: 82, Mismatches: 10, Indels: 15
0.77 0.09 0.14
Matches are distributed among these distances:
21 2 0.02
22 10 0.12
23 26 0.32
24 33 0.40
25 11 0.13
ACGTcount: A:0.50, C:0.16, G:0.07, T:0.28
Consensus pattern (25 bp):
TCATGCAATAATCATAAAATCATAT
Found at i:17479276 original size:24 final size:23
Alignment explanation
Indices: 17479238--17479301 Score: 94
Period size: 24 Copynumber: 2.7 Consensus size: 23
17479228 ATAACTATGA
17479238 AATATA-TAATAATCATACAAAT
1 AATATATTAATAATCATACAAAT
*
17479260 ACATATATTAATAATCATGCAAAT
1 A-ATATATTAATAATCATACAAAT
17479284 AATATATTAATACATCAT
1 AATATATTAATA-ATCAT
17479302 CAATATTAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
22 1 0.03
23 16 0.42
24 21 0.55
ACGTcount: A:0.53, C:0.11, G:0.02, T:0.34
Consensus pattern (23 bp):
AATATATTAATAATCATACAAAT
Found at i:17479518 original size:31 final size:32
Alignment explanation
Indices: 17479483--17479543 Score: 90
Period size: 31 Copynumber: 1.9 Consensus size: 32
17479473 AATTAAAACT
17479483 AAAAAACAAAAAAAAG-AATAAAAAT-AAAATA
1 AAAAAACAAAAAAAAGCAA-AAAAATCAAAATA
*
17479514 AAAAAACAAAACAAAGCAAAAAAATCAAAA
1 AAAAAACAAAAAAAAGCAAAAAAATCAAAA
17479544 GCAAAATAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 21 0.78
32 6 0.22
ACGTcount: A:0.82, C:0.08, G:0.03, T:0.07
Consensus pattern (32 bp):
AAAAAACAAAAAAAAGCAAAAAAATCAAAATA
Found at i:17479524 original size:18 final size:19
Alignment explanation
Indices: 17479485--17479549 Score: 62
Period size: 18 Copynumber: 3.5 Consensus size: 19
17479475 TTAAAACTAA
* *
17479485 AAAACAAAA-AAAAGAATA
1 AAAACAAAACAAAAAAATC
* *
17479503 AAAATAAAATAAAAAAA-C
1 AAAACAAAACAAAAAAATC
*
17479521 AAAACAAAGCAAAAAAATC
1 AAAACAAAACAAAAAAATC
17479540 AAAAGCAAAA
1 AAAA-CAAAA
17479550 TAGAAATTAA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
18 22 0.59
19 11 0.30
20 4 0.11
ACGTcount: A:0.80, C:0.09, G:0.05, T:0.06
Consensus pattern (19 bp):
AAAACAAAACAAAAAAATC
Found at i:17480726 original size:6 final size:6
Alignment explanation
Indices: 17480641--17480737 Score: 85
Period size: 6 Copynumber: 16.7 Consensus size: 6
17480631 CAAAAACTAG
* * * *
17480641 AATT-A AATT-A AATTCAA AATCAA AACTAA AATTAA AACTAA AACTAA
1 AATTAA AATTAA AATT-AA AATTAA AATTAA AATTAA AATTAA AATTAA
* * * *
17480688 AATCAA AATTAA AA-TCA AATTAA AATCAA AATTAA AATTAA GA-TAA
1 AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA
17480734 AATT
1 AATT
17480738 TTAGGGCCTT
Statistics
Matches: 74, Mismatches: 14, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
5 17 0.23
6 53 0.72
7 4 0.05
ACGTcount: A:0.64, C:0.08, G:0.01, T:0.27
Consensus pattern (6 bp):
AATTAA
Found at i:17480734 original size:23 final size:23
Alignment explanation
Indices: 17480668--17480736 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
17480658 AATCAAAACT
*
17480668 AAAATTAAAACTAAAACTAAAATC
1 AAAATTAAAA-TTAAACTAAAATC
* *
17480692 AAAATTAAAATCAAATTAAAATC
1 AAAATTAAAATTAAACTAAAATC
17480715 AAAATTAAAATTAAGA-TAAAAT
1 AAAATTAAAATTAA-ACTAAAAT
17480737 TTTAGGGCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
23 30 0.73
24 11 0.27
ACGTcount: A:0.67, C:0.07, G:0.01, T:0.25
Consensus pattern (23 bp):
AAAATTAAAATTAAACTAAAATC
Found at i:17481030 original size:43 final size:43
Alignment explanation
Indices: 17480977--17481115 Score: 152
Period size: 43 Copynumber: 3.2 Consensus size: 43
17480967 TTGAAACTTT
* *
17480977 AAATAAAATGCTCCTCTACAACTGAGATTTTGAAACTTTTCAA
1 AAATAAAATGCTCCTCCACAACTGAGACTTTGAAACTTTTCAA
* ** * **
17481020 AAATAGAATGCTTATCCACAACTGAGGCTTTGAAACTTTTGGA
1 AAATAAAATGCTCCTCCACAACTGAGACTTTGAAACTTTTCAA
* * * * * *
17481063 AAATAAAATGCTCCCCCATAACTAAGGCTTTGAAAATTTTGAA
1 AAATAAAATGCTCCTCCACAACTGAGACTTTGAAACTTTTCAA
17481106 AAATAAAATG
1 AAATAAAATG
17481116 ATCTTTCATA
Statistics
Matches: 80, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 80 1.00
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.29
Consensus pattern (43 bp):
AAATAAAATGCTCCTCCACAACTGAGACTTTGAAACTTTTCAA
Found at i:17481148 original size:19 final size:19
Alignment explanation
Indices: 17481124--17481162 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
17481114 TGATCTTTCA
17481124 TAAGTGAGTTTTTAGAACT
1 TAAGTGAGTTTTTAGAACT
17481143 TAAGTGAGTTTTTAGAACT
1 TAAGTGAGTTTTTAGAACT
17481162 T
1 T
17481163 TTGAAAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.05, G:0.21, T:0.44
Consensus pattern (19 bp):
TAAGTGAGTTTTTAGAACT
Found at i:17481218 original size:43 final size:43
Alignment explanation
Indices: 17481157--17481261 Score: 135
Period size: 43 Copynumber: 2.5 Consensus size: 43
17481147 TGAGTTTTTA
17481157 GAACTTTTGAAAAATAAAATAG-TCCCCCACAACTGAGGCTTTG
1 GAACTTTTGAAAAATAAAATAGCTCCCCCACAACT-AGGCTTTG
* ** *
17481200 GAACTTTTGGAAAATAAAAT-GCTCCCTTATAACTAGGCTTTG
1 GAACTTTTGAAAAATAAAATAGCTCCCCCACAACTAGGCTTTG
*
17481242 AAAC-TTTGAAAAATAAAATA
1 GAACTTTTGAAAAATAAAATA
17481262 AGATATTTGA
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
41 14 0.26
42 12 0.22
43 28 0.52
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (43 bp):
GAACTTTTGAAAAATAAAATAGCTCCCCCACAACTAGGCTTTG
Found at i:17487842 original size:14 final size:14
Alignment explanation
Indices: 17487823--17487856 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
17487813 CAATAATTAG
17487823 AAATATCATGCCAA-
1 AAATATCATG-CAAT
17487837 AAATATCATGCAAT
1 AAATATCATGCAAT
17487851 AAATAT
1 AAATAT
17487857 AAAATCACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 3 0.16
14 16 0.84
ACGTcount: A:0.53, C:0.15, G:0.06, T:0.26
Consensus pattern (14 bp):
AAATATCATGCAAT
Found at i:17487900 original size:24 final size:24
Alignment explanation
Indices: 17487839--17487924 Score: 100
Period size: 24 Copynumber: 3.6 Consensus size: 24
17487829 CATGCCAAAA
*
17487839 ATATCATGCAATAAATATAAAATC
1 ATATCATGCAATAAACATAAAATC
* * ** *
17487863 ACACCATTTAATAAAGATAAAATC
1 ATATCATGCAATAAACATAAAATC
* *
17487887 ATATCATGCGATAATCATAAAATC
1 ATATCATGCAATAAACATAAAATC
17487911 ATATCATGCAATAA
1 ATATCATGCAATAA
17487925 TAAATAATGA
Statistics
Matches: 49, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 49 1.00
ACGTcount: A:0.51, C:0.15, G:0.06, T:0.28
Consensus pattern (24 bp):
ATATCATGCAATAAACATAAAATC
Found at i:17488003 original size:23 final size:21
Alignment explanation
Indices: 17487935--17488048 Score: 96
Period size: 20 Copynumber: 5.5 Consensus size: 21
17487925 TAAATAATGA
*
17487935 ATAATGAATAATCATGCAAAT
1 ATAATAAATAATCATGCAAAT
*
17487956 AAATATATTAATAATCATGCAAAT
1 --ATA-ATAAATAATCATGCAAAT
17487980 ACT-AT--ATAATCATG-AAAT
1 A-TAATAAATAATCATGCAAAT
17487998 ATAATAAATAATCATGCAAAT
1 ATAATAAATAATCATGCAAAT
* * *
17488019 AT-ATTAATTACCATGC-AAT
1 ATAATAAATAATCATGCAAAT
17488038 AATAATAAATA
1 -ATAATAAATA
17488049 CTATTCAAGA
Statistics
Matches: 77, Mismatches: 6, Indels: 18
0.76 0.06 0.18
Matches are distributed among these distances:
17 1 0.01
18 7 0.09
19 12 0.16
20 22 0.29
21 13 0.17
22 1 0.01
23 4 0.05
24 17 0.22
ACGTcount: A:0.54, C:0.10, G:0.05, T:0.32
Consensus pattern (21 bp):
ATAATAAATAATCATGCAAAT
Found at i:17488168 original size:19 final size:21
Alignment explanation
Indices: 17488144--17488185 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 21
17488134 TCACATAATT
17488144 AAATTAAA-AAAAGAAT-GAA
1 AAATTAAATAAAAGAATAGAA
*
17488163 AAATTAAATAAAATAATAGAA
1 AAATTAAATAAAAGAATAGAA
17488184 AA
1 AA
17488186 GAAAACACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 8 0.40
20 7 0.35
21 5 0.25
ACGTcount: A:0.74, C:0.00, G:0.07, T:0.19
Consensus pattern (21 bp):
AAATTAAATAAAAGAATAGAA
Done.