Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 115 of 190
Found at i:17969452 original size:83 final size:84
Alignment explanation
Indices: 17969293--17969452 Score: 207
Period size: 83 Copynumber: 1.9 Consensus size: 84
17969283 CAGGTCTTCC
* * *
17969293 TTGAAATATGCCAACCAATGAAAAATATTGAGTTGTCAATCACCCTATTCACAAACATTCCAAAT
1 TTGAAATATGCCAACCAATGAAAAATATTGAATTGCCAATCACCCTATCCACAAACATTCCAAAT
17969358 AGTAATCATCAAGCTTTCT
66 AGTAATCATCAAGCTTTCT
* * * * * *
17969377 TTGAAATATGCCCACCAGTGAAAAA-ATTGAATTGCCAATCATGCC-ATCCATAAGCATTTCAAA
1 TTGAAATATGCCAACCAATGAAAAATATTGAATTGCCAATCA-CCCTATCCACAAACATTCCAAA
*
17969440 TAGTAATTATCAA
65 TAGTAATCATCAA
17969453 TTTACAAGAT
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
83 40 0.62
84 25 0.38
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.29
Consensus pattern (84 bp):
TTGAAATATGCCAACCAATGAAAAATATTGAATTGCCAATCACCCTATCCACAAACATTCCAAAT
AGTAATCATCAAGCTTTCT
Found at i:17970024 original size:25 final size:26
Alignment explanation
Indices: 17969985--17970045 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 26
17969975 AAACATTGTC
* *
17969985 ATTTGCATTAGG-AAAAGTCAAATGT
1 ATTTGCATCAGGAAAAAATCAAATGT
* *
17970010 ATTTGCATCATGAAAAAATCACATGT
1 ATTTGCATCAGGAAAAAATCAAATGT
*
17970036 ATTTACATCA
1 ATTTGCATCA
17970046 AGCATTCGCA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 10 0.33
26 20 0.67
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (26 bp):
ATTTGCATCAGGAAAAAATCAAATGT
Found at i:17970716 original size:105 final size:105
Alignment explanation
Indices: 17970535--17970761 Score: 350
Period size: 105 Copynumber: 2.2 Consensus size: 105
17970525 ACTTTCAGGT
* * * *
17970535 ATAATTTCTAAGACCTCTGAGTAAAACATTTTAAAATTTTAAAGTTTCAATGCCTCTATTACAAG
1 ATAATCTCTAAGACCTCTAAGCAAAACATTTTAAAATTTTAAAGTTTCAACGCCTCTATTACAAG
*
17970600 TAGCATTCAAAGATTTTTGAGATTTGTAAGACCTT-TGGGC
66 TAGCATACAAAGATTTTTGAGATTTGTAAGA-CTTCTGGGC
* *
17970640 ATAATCTCTAAGACCTCTAAGCAAAACATTTTAAATTTTTAAAGTTTCAACGCCTTTATTACATA
1 ATAATCTCTAAGACCTCTAAGCAAAACATTTTAAAATTTTAAAGTTTCAACGCCTCTATTACA-A
*
17970705 G-AGCCTACAAAGATTTTTGAGATTTGTAAGACTTCTGGGC
65 GTAGCATACAAAGATTTTTGAGATTTGTAAGACTTCTGGGC
17970745 ATAATCTCTAAGACCTC
1 ATAATCTCTAAGACCTC
17970762 AAGGCATAAT
Statistics
Matches: 112, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
104 3 0.03
105 107 0.96
106 2 0.02
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (105 bp):
ATAATCTCTAAGACCTCTAAGCAAAACATTTTAAAATTTTAAAGTTTCAACGCCTCTATTACAAG
TAGCATACAAAGATTTTTGAGATTTGTAAGACTTCTGGGC
Found at i:17970767 original size:22 final size:22
Alignment explanation
Indices: 17970742--17970783 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
17970732 AAGACTTCTG
17970742 GGCATAATCTCTAAGACCTCAA
1 GGCATAATCTCTAAGACCTCAA
*
17970764 GGCATAATTTCTAAGACCTC
1 GGCATAATCTCTAAGACCTC
17970784 CGGGTAAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.26
Consensus pattern (22 bp):
GGCATAATCTCTAAGACCTCAA
Found at i:17970813 original size:232 final size:232
Alignment explanation
Indices: 17970390--17970888 Score: 693
Period size: 231 Copynumber: 2.2 Consensus size: 232
17970380 ACCCAAATAT
* * * * * * *
17970390 ATTTCTAAGACCTCTAGTCACAATCTTTAAAACCTCTAGGCAAAACATTTTAAATTTTCAAAGTT
1 ATTTGTAAGACCTTTGGGCACAATCTCTAAGACCTCTAAGCAAAACATTTTAAATTTTCAAAGTT
*
17970455 TCAACACCTCTATTACGATGAGCATTCAAAGATTTTTGAAATTTGCAAGACTCTGGGCATAATCT
66 TCAACACCTCTATTACGATGAGCATACAAAGATTTTTGAAATTTGCAAGACTCTGGGCATAATCT
* * * *
17970520 CTAAGACTTTCAGGTATAATTTCTAAGACCTCTGAGTAAAACATTTTAAAATTTTAAAGTTTCAA
131 CTAAGACTCTCAGGCATAATTTCTAAGACCTCCGAGTAAAACATTTTAAAATTTCAAAGTTTCAA
* *
17970585 TGCCTCT-AT-TACAAGTAGCATTCAAAGATTTTTGAG
196 TGCCTCTAATGTACAAGGAGCATTCAAAGA-TTTTAAG
* *
17970621 ATTTGTAAGACCTTTGGGCATAATCTCTAAGACCTCTAAGCAAAACATTTTAAATTTTTAAAGTT
1 ATTTGTAAGACCTTTGGGCACAATCTCTAAGACCTCTAAGCAAAACATTTTAAATTTTCAAAGTT
* * * * *
17970686 TCAACGCCTTTATTAC-ATAGAGCCTACAAAGATTTTTGAGATTTGTAAGACTTCTGGGCATAAT
66 TCAACACCTCTATTACGAT-GAGCATACAAAGATTTTTGAAATTTGCAAGAC-TCTGGGCATAAT
*
17970750 CTCTAAGAC-CTCAAGGCATAATTTCTAAGACCTCCGGGTAAAACATTTTAAAATTTCAAAGTTT
129 CTCTAAGACTCTC-AGGCATAATTTCTAAGACCTCCGAGTAAAACATTTTAAAATTTCAAAGTTT
**
17970814 CAATGCCTCTAATGTATGAGGAGCATTCAAAGATTTTAAG
193 CAATGCCTCTAATGTACAAGGAGCATTCAAAGATTTTAAG
*
17970854 ATTTTTAAGACCTTTGGGCACAATC-CTTAAGACCT
1 ATTTGTAAGACCTTTGGGCACAATCTC-TAAGACCT
17970889 ATAGGCAAGA
Statistics
Matches: 236, Mismatches: 26, Indels: 10
0.87 0.10 0.04
Matches are distributed among these distances:
230 2 0.01
231 100 0.42
232 79 0.33
233 39 0.17
234 16 0.07
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (232 bp):
ATTTGTAAGACCTTTGGGCACAATCTCTAAGACCTCTAAGCAAAACATTTTAAATTTTCAAAGTT
TCAACACCTCTATTACGATGAGCATACAAAGATTTTTGAAATTTGCAAGACTCTGGGCATAATCT
CTAAGACTCTCAGGCATAATTTCTAAGACCTCCGAGTAAAACATTTTAAAATTTCAAAGTTTCAA
TGCCTCTAATGTACAAGGAGCATTCAAAGATTTTAAG
Found at i:17971124 original size:5 final size:5
Alignment explanation
Indices: 17971110--17971154 Score: 63
Period size: 5 Copynumber: 8.8 Consensus size: 5
17971100 AAAAAAAGAA
* *
17971110 AAAAC AAAAC AAAAC ACAAC ACAAC AAAAAC AAAAC AAAAC AAAA
1 AAAAC AAAAC AAAAC AAAAC AAAAC -AAAAC AAAAC AAAAC AAAA
17971155 AGCAAAACAC
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
5 33 0.89
6 4 0.11
ACGTcount: A:0.78, C:0.22, G:0.00, T:0.00
Consensus pattern (5 bp):
AAAAC
Found at i:17971137 original size:38 final size:37
Alignment explanation
Indices: 17971095--17971229 Score: 112
Period size: 38 Copynumber: 3.5 Consensus size: 37
17971085 TTATTAATTT
17971095 ACAAAAAAAAAAGAAAA-AACAAAACAAAACACAACACA
1 ACAAAAAAAAAAGAAAACAA-AAAACAAAACACAACA-A
* * * *
17971133 ACAAAAACAAAACAAAACAAAAAGCAAAACACAAGAA
1 ACAAAAAAAAAAGAAAACAAAAAACAAAACACAACAA
* *
17971170 ACAAAAAAAATCAAGAAAACTCAAAAGAA-AAAACAATAAAAA
1 ACAAAAAAAA--AAGAAAA--CAAAA-AACAAAAC-ACAACAA
*
17971212 ACCAAAAAATAAAGAAAA
1 A-CAAAAAAAAAAGAAAA
17971230 AAAGGAGGGG
Statistics
Matches: 79, Mismatches: 10, Indels: 13
0.77 0.10 0.13
Matches are distributed among these distances:
37 10 0.13
38 29 0.37
39 8 0.10
41 17 0.22
42 7 0.09
43 8 0.10
ACGTcount: A:0.77, C:0.16, G:0.04, T:0.03
Consensus pattern (37 bp):
ACAAAAAAAAAAGAAAACAAAAAACAAAACACAACAA
Found at i:17971139 original size:21 final size:20
Alignment explanation
Indices: 17971095--17971176 Score: 70
Period size: 17 Copynumber: 4.3 Consensus size: 20
17971085 TTATTAATTT
* *
17971095 ACAAAAA-AAAA-AGAAAAA
1 ACAAAAACAAAACACAAACA
17971113 AC-AAAACAAAACACAACACA
1 ACAAAAACAAAACACAA-ACA
17971133 ACAAAAACAAAACA-AAAC-
1 ACAAAAACAAAACACAAACA
*
17971151 A-AAAAGCAAAACACAAGA-A
1 ACAAAAACAAAACACAA-ACA
17971170 ACAAAAA
1 ACAAAAA
17971177 AAATCAAGAA
Statistics
Matches: 52, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
17 15 0.29
18 9 0.17
19 7 0.13
20 10 0.19
21 11 0.21
ACGTcount: A:0.78, C:0.18, G:0.04, T:0.00
Consensus pattern (20 bp):
ACAAAAACAAAACACAAACA
Found at i:17971141 original size:16 final size:16
Alignment explanation
Indices: 17971110--17971166 Score: 71
Period size: 16 Copynumber: 3.6 Consensus size: 16
17971100 AAAAAAAGAA
*
17971110 AAAACAAAAC-AAAAC
1 AAAACACAACAAAAAC
*
17971125 ACAACACAACAAAAAC
1 AAAACACAACAAAAAC
*
17971141 AAAACAAAACAAAAAGC
1 AAAACACAACAAAAA-C
17971158 AAAACACAA
1 AAAACACAA
17971167 GAAACAAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
15 8 0.23
16 18 0.51
17 9 0.26
ACGTcount: A:0.75, C:0.23, G:0.02, T:0.00
Consensus pattern (16 bp):
AAAACACAACAAAAAC
Found at i:17971145 original size:31 final size:31
Alignment explanation
Indices: 17971110--17971179 Score: 92
Period size: 31 Copynumber: 2.3 Consensus size: 31
17971100 AAAAAAAGAA
*
17971110 AAAACAAAACAAAACA-CAACACAACAA-AAAC
1 AAAACAAAACAAAA-AGCAAAAC-ACAAGAAAC
17971141 AAAACAAAACAAAAAGCAAAACACAAGAAAC
1 AAAACAAAACAAAAAGCAAAACACAAGAAAC
17971172 AAAA-AAAA
1 AAAACAAAA
17971180 TCAAGAAAAC
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
30 9 0.25
31 27 0.75
ACGTcount: A:0.77, C:0.20, G:0.03, T:0.00
Consensus pattern (31 bp):
AAAACAAAACAAAAAGCAAAACACAAGAAAC
Found at i:17971217 original size:23 final size:25
Alignment explanation
Indices: 17971172--17971218 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
17971162 CACAAGAAAC
17971172 AAAAAAAATCAAGAAAACTCAAAAG
1 AAAAAAAATCAAGAAAACTCAAAAG
17971197 AAAAAACAAT-AA-AAAAC-CAAAA
1 AAAAAA-AATCAAGAAAACTCAAAA
17971219 AATAAAGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 5 0.24
24 5 0.24
25 8 0.38
26 3 0.14
ACGTcount: A:0.77, C:0.13, G:0.04, T:0.06
Consensus pattern (25 bp):
AAAAAAAATCAAGAAAACTCAAAAG
Found at i:17971676 original size:18 final size:18
Alignment explanation
Indices: 17971653--17971687 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
17971643 AATTTGGTGC
17971653 TTTTTAAAACACTATAAA
1 TTTTTAAAACACTATAAA
**
17971671 TTTTTATTACACTATAA
1 TTTTTAAAACACTATAA
17971688 GAAGTATAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (18 bp):
TTTTTAAAACACTATAAA
Found at i:17981439 original size:13 final size:13
Alignment explanation
Indices: 17981421--17981497 Score: 70
Period size: 12 Copynumber: 6.2 Consensus size: 13
17981411 ACCTAGATCC
*
17981421 AACCTAAACTCTA
1 AACCTAAACCCTA
*
17981434 AACCTAAGCCCTA
1 AACCTAAACCCTA
*
17981447 ACCCTAAACCCTA
1 AACCTAAACCCTA
* *
17981460 ACCCT-AACCTTA
1 AACCTAAACCCTA
*
17981472 ACCCT-AACCCTA
1 AACCTAAACCCTA
*
17981484 ACCCT-AACCCTA
1 AACCTAAACCCTA
17981496 AA
1 AA
17981498 TCCAAAGCAT
Statistics
Matches: 57, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
12 30 0.53
13 27 0.47
ACGTcount: A:0.39, C:0.42, G:0.01, T:0.18
Consensus pattern (13 bp):
AACCTAAACCCTA
Found at i:17981451 original size:6 final size:6
Alignment explanation
Indices: 17981431--17981496 Score: 96
Period size: 6 Copynumber: 10.7 Consensus size: 6
17981421 AACCTAAACT
* *
17981431 CTAAAC CTAAGCC CTAACC CTAAACC CTAACC CTAACC TTAACC CTAACC
1 CTAACC CTAA-CC CTAACC CT-AACC CTAACC CTAACC CTAACC CTAACC
17981481 CTAACC CTAACC CTAA
1 CTAACC CTAACC CTAA
17981497 ATCCAAAGCA
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
6 44 0.80
7 11 0.20
ACGTcount: A:0.36, C:0.44, G:0.02, T:0.18
Consensus pattern (6 bp):
CTAACC
Found at i:17981585 original size:26 final size:26
Alignment explanation
Indices: 17981556--17981617 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
17981546 CTCTAACCCA
* * * *
17981556 AAACCCTAAATCGAGACTCTAAAATC
1 AAACCCTAAATCAAAACCCCAAAATC
17981582 AAACCCTAAATCAAAACCCCAAAATC
1 AAACCCTAAATCAAAACCCCAAAATC
17981608 AAACCC-AAAT
1 AAACCCTAAAT
17981618 TCTAACCCTA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
25 4 0.12
26 28 0.88
ACGTcount: A:0.52, C:0.31, G:0.03, T:0.15
Consensus pattern (26 bp):
AAACCCTAAATCAAAACCCCAAAATC
Found at i:17981608 original size:14 final size:13
Alignment explanation
Indices: 17981576--17981616 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 13
17981566 TCGAGACTCT
17981576 AAAATC-AAACCC
1 AAAATCAAAACCC
*
17981588 TAAATCAAAACCCC
1 AAAATCAAAA-CCC
17981602 AAAATC-AAACCC
1 AAAATCAAAACCC
17981614 AAA
1 AAA
17981617 TTCTAACCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 11 0.44
13 6 0.24
14 8 0.32
ACGTcount: A:0.59, C:0.32, G:0.00, T:0.10
Consensus pattern (13 bp):
AAAATCAAAACCC
Found at i:17981662 original size:13 final size:12
Alignment explanation
Indices: 17981556--17981662 Score: 72
Period size: 13 Copynumber: 8.4 Consensus size: 12
17981546 CTCTAACCCA
17981556 AAACCCTAAATC
1 AAACCCTAAATC
* *
17981568 GAGACTCTAAAATC
1 -AAACCCT-AAATC
17981582 AAACCCTAAATC
1 AAACCCTAAATC
*
17981594 AAAACCCCAAAATC
1 -AAA-CCCTAAATC
17981608 AAACCC-AAATTC
1 AAACCCTAAA-TC
* ***
17981620 TAACCCTAGCCC
1 AAACCCTAAATC
17981632 AAACCCTAAAATC
1 AAACCCT-AAATC
*
17981645 TAACCCTAAATC
1 AAACCCTAAATC
17981657 GAAACC
1 -AAACC
17981663 TTAATCCAAA
Statistics
Matches: 72, Mismatches: 15, Indels: 14
0.71 0.15 0.14
Matches are distributed among these distances:
11 3 0.04
12 27 0.38
13 29 0.40
14 13 0.18
ACGTcount: A:0.47, C:0.34, G:0.04, T:0.16
Consensus pattern (12 bp):
AAACCCTAAATC
Found at i:17987698 original size:18 final size:18
Alignment explanation
Indices: 17987687--17987721 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
17987677 AAAAAGTTAG
*
17987687 AAAACCAAAAAAAAAAAA
1 AAAACCAAAAAAAGAAAA
17987705 AAAACCAAAAAAAGAAA
1 AAAACCAAAAAAAGAAA
17987722 CTTTTAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.86, C:0.11, G:0.03, T:0.00
Consensus pattern (18 bp):
AAAACCAAAAAAAGAAAA
Found at i:17992326 original size:17 final size:18
Alignment explanation
Indices: 17992300--17992333 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
17992290 GGTGGACTAT
17992300 TGGTGATG-AAATGGTAG
1 TGGTGATGAAAATGGTAG
*
17992317 TGGTGGTGAAAATGGTA
1 TGGTGATGAAAATGGTA
17992334 CAATAGGGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.29, C:0.00, G:0.41, T:0.29
Consensus pattern (18 bp):
TGGTGATGAAAATGGTAG
Found at i:17993559 original size:18 final size:18
Alignment explanation
Indices: 17993501--17993561 Score: 56
Period size: 17 Copynumber: 3.5 Consensus size: 18
17993491 CCTTTTACAT
*
17993501 ATCTTTGAA-ACTTGTGG-
1 ATCTTTGAACTCTTG-GGA
* *
17993518 ATCTTTG-ACTTTTGTGA
1 ATCTTTGAACTCTTGGGA
*
17993535 ATTTTTGAACTCTTGGGA
1 ATCTTTGAACTCTTGGGA
17993553 ATCTTTGAA
1 ATCTTTGAA
17993562 ACTTACAAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
16 2 0.06
17 16 0.47
18 16 0.47
ACGTcount: A:0.23, C:0.11, G:0.20, T:0.46
Consensus pattern (18 bp):
ATCTTTGAACTCTTGGGA
Found at i:17993690 original size:17 final size:17
Alignment explanation
Indices: 17993670--17993782 Score: 61
Period size: 17 Copynumber: 6.6 Consensus size: 17
17993660 CAAACTTATT
17993670 AATCTTTGAAATTTGCA
1 AATCTTTGAAATTTGCA
*
17993687 AATCTTTG-ACTCTTGCA
1 AATCTTTGAAAT-TTGCA
* *
17993704 AAT-TTATGAACTTTTGCT
1 AATCTT-TGAA-ATTTGCA
* * * * **
17993722 AATATCTAAAACTTGTG
1 AATCTTTGAAATTTGCA
*
17993739 AATCTTTGAAACTT-CAA
1 AATCTTTGAAATTTGC-A
*
17993756 AATCTTTGAAAATTGCA
1 AATCTTTGAAATTTGCA
*
17993773 TATCTTTGAA
1 AATCTTTGAA
17993783 CTTTTGTGAA
Statistics
Matches: 73, Mismatches: 16, Indels: 14
0.71 0.16 0.14
Matches are distributed among these distances:
16 4 0.05
17 55 0.75
18 12 0.16
19 2 0.03
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.41
Consensus pattern (17 bp):
AATCTTTGAAATTTGCA
Found at i:17993800 original size:18 final size:18
Alignment explanation
Indices: 17993777--17993811 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
17993767 ATTGCATATC
17993777 TTTGAACTTT-TGTGAATG
1 TTTGAA-TTTATGTGAATG
17993795 TTTGAATTTATGTGAAT
1 TTTGAATTTATGTGAAT
17993812 TTTAGAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.26, C:0.03, G:0.20, T:0.51
Consensus pattern (18 bp):
TTTGAATTTATGTGAATG
Found at i:17993995 original size:41 final size:41
Alignment explanation
Indices: 17993950--17994027 Score: 102
Period size: 41 Copynumber: 1.9 Consensus size: 41
17993940 AAGCCTTTAA
* * *
17993950 ACCTCAAGTTGTGAATTTTTTACTCTAATATGAATCTAGAG
1 ACCTCAAGTTATGAATCTTTGACTCTAATATGAATCTAGAG
* * *
17993991 ACCTCTAGTTATGAATCTTTGACTCTGATGTGAATCT
1 ACCTCAAGTTATGAATCTTTGACTCTAATATGAATCT
17994028 TTGACTCAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 31 1.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (41 bp):
ACCTCAAGTTATGAATCTTTGACTCTAATATGAATCTAGAG
Found at i:17994041 original size:18 final size:19
Alignment explanation
Indices: 17994002--17994044 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
17993992 CCTCTAGTTA
*
17994002 TGAATCTTTGACTCTGATG
1 TGAATCTTTGACTCTAATG
17994021 TGAATCTTTGACTC-AATG
1 TGAATCTTTGACTCTAATG
17994039 TGAATC
1 TGAATC
17994045 CTAAGTTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 9 0.39
19 14 0.61
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.40
Consensus pattern (19 bp):
TGAATCTTTGACTCTAATG
Found at i:17995131 original size:13 final size:14
Alignment explanation
Indices: 17995107--17995135 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
17995097 AGTTTTAATC
17995107 TTCTTAAGTTTTTT
1 TTCTTAAGTTTTTT
17995121 TTCTT-AGTTTTTT
1 TTCTTAAGTTTTTT
17995134 TT
1 TT
17995136 GTATCTTAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.10, C:0.07, G:0.07, T:0.76
Consensus pattern (14 bp):
TTCTTAAGTTTTTT
Found at i:17996834 original size:33 final size:33
Alignment explanation
Indices: 17996797--17996866 Score: 113
Period size: 33 Copynumber: 2.1 Consensus size: 33
17996787 AATTGGTCTA
** *
17996797 ATATGCCTTACAAGCCAAGCCTGCCTATAATCC
1 ATATGCCCAACAAGCCAAGCCTACCTATAATCC
17996830 ATATGCCCAACAAGCCAAGCCTACCTATAATCC
1 ATATGCCCAACAAGCCAAGCCTACCTATAATCC
17996863 ATAT
1 ATAT
17996867 AATAATACTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.34, C:0.33, G:0.10, T:0.23
Consensus pattern (33 bp):
ATATGCCCAACAAGCCAAGCCTACCTATAATCC
Found at i:17999304 original size:18 final size:19
Alignment explanation
Indices: 17999283--17999323 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
17999273 TTTTTCCTTT
17999283 TGAAAAATA-AACTCTCCC
1 TGAAAAATATAACTCTCCC
* *
17999301 TGAATAATATAGCTCTCCC
1 TGAAAAATATAACTCTCCC
17999320 TGAA
1 TGAA
17999324 TTTAACTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.39, C:0.24, G:0.10, T:0.27
Consensus pattern (19 bp):
TGAAAAATATAACTCTCCC
Found at i:18010150 original size:7 final size:6
Alignment explanation
Indices: 18010121--18010261 Score: 97
Period size: 7 Copynumber: 21.8 Consensus size: 6
18010111 AATCATACCC
* * * *
18010121 AAACCT AAACCCT TAACCC AAACCTT AAACCT AGACCT CAAATCT AAACCCT
1 AAACCT AAA-CCT AAACCT AAACC-T AAACCT AAACCT -AAACCT AAA-CCT
*
18010173 AAACCCT AAACCCT AAACCT AAACTCT AAATCT AAACCCT -AACCAT AAACCT
1 AAA-CCT AAA-CCT AAACCT AAAC-CT AAACCT AAA-CCT AAACC-T AAACCT
* *
18010225 AAACCTT AGATCT AAACCCT -AACCAT AAACCT AAACC
1 AAACC-T AAACCT AAA-CCT AAACC-T AAACCT AAACC
18010262 ATAACTCTAA
Statistics
Matches: 109, Mismatches: 14, Indels: 24
0.74 0.10 0.16
Matches are distributed among these distances:
5 4 0.04
6 51 0.47
7 54 0.50
ACGTcount: A:0.45, C:0.35, G:0.01, T:0.19
Consensus pattern (6 bp):
AAACCT
Found at i:18010227 original size:32 final size:32
Alignment explanation
Indices: 18010171--18010277 Score: 146
Period size: 32 Copynumber: 3.3 Consensus size: 32
18010161 AATCTAAACC
*
18010171 CTAAACCCTAAACCCTAAACCTAAACTC-TAAAT
1 CTAAACCCT-AACCATAAACCTAAAC-CATAAAT
* *
18010204 CTAAACCCTAACCATAAACCTAAACCTTAGAT
1 CTAAACCCTAACCATAAACCTAAACCATAAAT
*
18010236 CTAAACCCTAACCATAAACCTAAACCATAACT
1 CTAAACCCTAACCATAAACCTAAACCATAAAT
18010268 CT-AACCCTAA
1 CTAAACCCTAA
18010278 GCCCCAAATT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
31 9 0.13
32 50 0.74
33 9 0.13
ACGTcount: A:0.45, C:0.34, G:0.01, T:0.21
Consensus pattern (32 bp):
CTAAACCCTAACCATAAACCTAAACCATAAAT
Found at i:18010265 original size:13 final size:12
Alignment explanation
Indices: 18010121--18010261 Score: 97
Period size: 13 Copynumber: 10.9 Consensus size: 12
18010111 AATCATACCC
18010121 AAACCTAAACCCT
1 AAACCTAAA-CCT
* *
18010134 TAACCCAAACCTT
1 AAACCTAAACC-T
*
18010147 AAACCTAGACCT
1 AAACCTAAACCT
*
18010159 CAAATCTAAACCCT
1 -AAACCTAAA-CCT
18010173 AAACCCTAAACCCT
1 AAA-CCTAAA-CCT
18010187 AAACCTAAACTCT
1 AAACCTAAAC-CT
*
18010200 AAATCTAAACCCT
1 AAACCTAAA-CCT
18010213 -AACCATAAACCT
1 AAACC-TAAACCT
* *
18010225 AAACCTTAGATCT
1 AAACC-TAAACCT
18010238 AAACCCT-AACCAT
1 AAA-CCTAAACC-T
18010251 AAACCTAAACC
1 AAACCTAAACC
18010262 ATAACTCTAA
Statistics
Matches: 102, Mismatches: 15, Indels: 22
0.73 0.11 0.16
Matches are distributed among these distances:
12 15 0.15
13 69 0.68
14 18 0.18
ACGTcount: A:0.45, C:0.35, G:0.01, T:0.19
Consensus pattern (12 bp):
AAACCTAAACCT
Found at i:18010327 original size:39 final size:38
Alignment explanation
Indices: 18010283--18010356 Score: 114
Period size: 39 Copynumber: 1.9 Consensus size: 38
18010273 CCTAAGCCCC
18010283 AAATTGAGA-CTCCAAAACCAAACCCTAAATCATAACTCT
1 AAATTGAGACCT-CAAAACCAAACCCTAAATC-TAACTCT
*
18010322 AAATTGAGACCTCAAAAGCAAACCCTAAATCTAAC
1 AAATTGAGACCTCAAAACCAAACCCTAAATCTAAC
18010357 CCTAGCCCAA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
38 4 0.12
39 27 0.82
40 2 0.06
ACGTcount: A:0.47, C:0.27, G:0.07, T:0.19
Consensus pattern (38 bp):
AAATTGAGACCTCAAAACCAAACCCTAAATCTAACTCT
Found at i:18010382 original size:25 final size:25
Alignment explanation
Indices: 18010340--18010401 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
18010330 ACCTCAAAAG
* *
18010340 CAAACCCT-AAATCTAACCCTAGCC
1 CAAACCTTAAAATCTAACCCTAACC
*
18010364 CAAACCTTAAAATCTAACCCTAATC
1 CAAACCTTAAAATCTAACCCTAACC
*
18010389 TAAACCTTAAAAT
1 CAAACCTTAAAAT
18010402 GCAACCTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
24 7 0.21
25 26 0.79
ACGTcount: A:0.44, C:0.32, G:0.02, T:0.23
Consensus pattern (25 bp):
CAAACCTTAAAATCTAACCCTAACC
Found at i:18010418 original size:25 final size:25
Alignment explanation
Indices: 18010348--18010419 Score: 76
Period size: 25 Copynumber: 2.9 Consensus size: 25
18010338 AGCAAACCCT
* *
18010348 AAATCTAACCCTAGCCCAAACCTTA
1 AAATCTAACCCTAACCAAAACCTTA
* *
18010373 AAATCTAACCCTAATCTAAACCTTA
1 AAATCTAACCCTAACCAAAACCTTA
18010398 AAATGC-AA-CCTAAACCAAAACC
1 AAAT-CTAACCCT-AACCAAAACC
18010420 CTAATTCAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
24 3 0.08
25 36 0.90
26 1 0.03
ACGTcount: A:0.46, C:0.32, G:0.03, T:0.19
Consensus pattern (25 bp):
AAATCTAACCCTAACCAAAACCTTA
Found at i:18015154 original size:32 final size:32
Alignment explanation
Indices: 18015112--18015176 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
18015102 TCTCTCCAAG
* ***
18015112 TAATTAAATCTCTTTTTTTGTAAGACATTTCC
1 TAATTAAATCTCTTCTTCCATAAGACATTTCC
*
18015144 TAATTGAATCTCTTCTTCCATAAGACATTTCC
1 TAATTAAATCTCTTCTTCCATAAGACATTTCC
18015176 T
1 T
18015177 TTTTCAAGCA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.28, C:0.20, G:0.06, T:0.46
Consensus pattern (32 bp):
TAATTAAATCTCTTCTTCCATAAGACATTTCC
Found at i:18019556 original size:20 final size:21
Alignment explanation
Indices: 18019531--18019571 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
18019521 TTTTTTTTTC
18019531 TTTCTTTTTT-TATAATTTAA
1 TTTCTTTTTTATATAATTTAA
*
18019551 TTTCTTTTTTATGTAATTTAA
1 TTTCTTTTTTATATAATTTAA
18019572 CTTTTGTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.68
Consensus pattern (21 bp):
TTTCTTTTTTATATAATTTAA
Found at i:18019658 original size:9 final size:9
Alignment explanation
Indices: 18019646--18019701 Score: 62
Period size: 9 Copynumber: 6.0 Consensus size: 9
18019636 TTTTTAATTT
18019646 TTAAATTAA
1 TTAAATTAA
18019655 TTAAATTAA
1 TTAAATTAA
18019664 TTAAATTAA
1 TTAAATTAA
18019673 TCTTAAA-TAA
1 --TTAAATTAA
18019683 -TATAATTAAA
1 TTA-AATT-AA
18019693 TTAAATTAA
1 TTAAATTAA
18019702 AAATAATTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
7 2 0.05
8 2 0.05
9 21 0.51
10 9 0.22
11 7 0.17
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (9 bp):
TTAAATTAA
Found at i:18019658 original size:33 final size:34
Alignment explanation
Indices: 18019590--18019658 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 34
18019580 ATTAATTTTT
18019590 ATTATACATATTTTTATAATTTGACTAATTAATTA
1 ATTATACATATTTTTATAATTTGAC-AATTAATTA
* *
18019625 ATTATATATATTTTT-TAATTTTTA-AATTAATTA
1 ATTATACATATTTTTATAA-TTTGACAATTAATTA
18019658 A
1 A
18019659 ATTAATTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
33 10 0.32
34 3 0.10
35 18 0.58
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (34 bp):
ATTATACATATTTTTATAATTTGACAATTAATTA
Found at i:18019661 original size:5 final size:5
Alignment explanation
Indices: 18019646--18019702 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
18019636 TTTTTAATTT
*
18019646 TTAAA TT-AA TTAAA TT-AA TTAAA TTAATC TTAAA TAATATAA TTAAA
1 TTAAA TTAAA TTAAA TTAAA TTAAA TTAA-A TTAAA T--TA-AA TTAAA
18019693 TTAAA TTAAA
1 TTAAA TTAAA
18019703 AATAATTAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 8 0.18
5 25 0.57
6 6 0.14
7 2 0.05
8 3 0.07
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
TTAAA
Found at i:18019712 original size:24 final size:23
Alignment explanation
Indices: 18019658--18019713 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 23
18019648 AAATTAATTA
*
18019658 AATTAATTAAATTAATCTTAAAT
1 AATTAATTAAATTAATCTAAAAT
18019681 AATATAATTAAATTAAAT-TAAAAAT
1 AAT-TAATTAAATT-AATCT-AAAAT
18019706 AATTAATT
1 AATTAATT
18019714 CGGAACAAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
23 3 0.10
24 16 0.55
25 10 0.34
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (23 bp):
AATTAATTAAATTAATCTAAAAT
Found at i:18019712 original size:29 final size:28
Alignment explanation
Indices: 18019649--18019713 Score: 69
Period size: 29 Copynumber: 2.3 Consensus size: 28
18019639 TTAATTTTTA
***
18019649 AATTAATTAAATTAATTAAATTAATCTT
1 AATTAATTAAATTAATTAAATTAAAAAT
*
18019677 AAATAA-TATAATTAAATTAAATTAAAAAT
1 AATTAATTA-AATT-AATTAAATTAAAAAT
18019706 AATTAATT
1 AATTAATT
18019714 CGGAACAAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 2 0.07
28 9 0.31
29 17 0.59
30 1 0.03
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (28 bp):
AATTAATTAAATTAATTAAATTAAAAAT
Found at i:18020066 original size:22 final size:22
Alignment explanation
Indices: 18020036--18020087 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
18020026 CTTTGTCTGG
*
18020036 AGGTCTTAGAGATTATGCCTAA
1 AGGTTTTAGAGATTATGCCTAA
* *
18020058 AGGTTTTAGAGATTATGCTTGA
1 AGGTTTTAGAGATTATGCCTAA
18020080 AGGTTTTA
1 AGGTTTTA
18020088 TAAATTTCAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.29, C:0.08, G:0.25, T:0.38
Consensus pattern (22 bp):
AGGTTTTAGAGATTATGCCTAA
Found at i:18020421 original size:125 final size:124
Alignment explanation
Indices: 18020173--18020545 Score: 448
Period size: 125 Copynumber: 3.0 Consensus size: 124
18020163 GGTTTTGAAA
* * *
18020173 ATTATGCCCAGAGGTCATACAAATCTCAAAATCTTTGAATGCTTCTCATAATAGAGGCATTGAAA
1 ATTATGCCCA-AGGTCTTACAAATCTCAAAATCTTTGAATGATACTCATAATAGAGGCATTGAAA
* * * * ** *
18020238 CGTTGAAAATTTAAAATGTTTGAC-CAAAAGTATTGTAAATTATGCTCGAAGGTTTTAGAG
65 C-TTTAAAATTTAAAATGTTTTACTCAAAGGTCTTAAAAATTATGCTCGAAGGTCTTAGAG
* * * * * *
18020298 ATTATGCCCGAAGGTCTTAAAAATCTCAAAATTTTTGAATGATCCACATAATAGAGGCCTCGAAA
1 ATTATGCCC-AAGGTCTTACAAATCTCAAAATCTTTGAATGATACTCATAATAGAGGCATTGAAA
18020363 CTTTAAAATTTTAAAATGTTTTACTCAAAGGTCTTAAAAATTATGCTCG-AGGTCTTAGAG
65 CTTTAAAA-TTTAAAATGTTTTACTCAAAGGTCTTAAAAATTATGCTCGAAGGTCTTAGAG
* *
18020423 ATTATGGCCAAAGGT-TTCACAAATCTCAAAATCTTTGAATGTTACTCATAATAGAGGCATTGAA
1 ATTAT-GCCCAAGGTCTT-ACAAATCTCAAAATCTTTGAATGATACTCATAATAGAGGCATTGAA
* * **
18020487 ACTTTAAAAATTTAAAATGTGTTGCTCAAAGGTCTTAAGGA-TAGTGCTCGAAGGTCTTA
64 ACTTT-AAAATTTAAAATGTTTTACTCAAAGGTCTTAAAAATTA-TGCTCGAAGGTCTTA
18020546 AAAATATGTT
Statistics
Matches: 213, Mismatches: 27, Indels: 15
0.84 0.11 0.06
Matches are distributed among these distances:
124 10 0.05
125 167 0.78
126 36 0.17
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.32
Consensus pattern (124 bp):
ATTATGCCCAAGGTCTTACAAATCTCAAAATCTTTGAATGATACTCATAATAGAGGCATTGAAAC
TTTAAAATTTAAAATGTTTTACTCAAAGGTCTTAAAAATTATGCTCGAAGGTCTTAGAG
Found at i:18020856 original size:18 final size:18
Alignment explanation
Indices: 18020833--18020880 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
18020823 CCATCAAATG
*
18020833 ATGCAAATGCAAATGTCA
1 ATGCAAATGCAAATATCA
18020851 ATGCAAATGCAAATATCA
1 ATGCAAATGCAAATATCA
*
18020869 ATGCGAATGCAA
1 ATGCAAATGCAA
18020881 GAATGTAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.46, C:0.17, G:0.17, T:0.21
Consensus pattern (18 bp):
ATGCAAATGCAAATATCA
Found at i:18022516 original size:21 final size:20
Alignment explanation
Indices: 18022492--18022536 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
18022482 TCTTTTGCTC
*
18022492 TTTTTT-CTTTTATTTTTTT
1 TTTTTTCCTTTCATTTTTTT
18022511 ATTTTTTCCTTTCATTTTTTT
1 -TTTTTTCCTTTCATTTTTTT
18022532 TTTTT
1 TTTTT
18022537 GTGTGGAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.07, C:0.09, G:0.00, T:0.84
Consensus pattern (20 bp):
TTTTTTCCTTTCATTTTTTT
Found at i:18028910 original size:55 final size:54
Alignment explanation
Indices: 18028793--18028978 Score: 182
Period size: 54 Copynumber: 3.4 Consensus size: 54
18028783 CTAATTATTC
* * *
18028793 CATCATTTGGGCCAAATTAGAAATATTTGC-TTA-TTTTTAATTTTTAATTTTTTT
1 CATCATTTGGGCCAATTTAGAAAT-TTTTCTTTATTTTTTAATTTTTAA-ATTTTT
* * *
18028847 CA-CAATTTGGGCCTATTTAGAAATTCTTTTTTTATTTTTTTATTTTTAAATTTTT
1 CATC-ATTTGGGCCAATTTAGAAATT-TTTCTTTATTTTTTAATTTTTAAATTTTT
* * * *
18028902 CATCATTTGGGTCAATTTAGAAATATTTTCTTT-TTTTTTAATTTCTAGATTTTC
1 CATCATTTGGGCCAATTTAGAAAT-TTTTCTTTATTTTTTAATTTTTAAATTTTT
* **
18028956 CACCATTTGGGCTTATTTAGAAA
1 CATCATTTGGGCCAATTTAGAAA
18028979 CTTCCCCTCT
Statistics
Matches: 109, Mismatches: 17, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
53 2 0.02
54 58 0.53
55 34 0.31
56 15 0.14
ACGTcount: A:0.26, C:0.11, G:0.10, T:0.54
Consensus pattern (54 bp):
CATCATTTGGGCCAATTTAGAAATTTTTCTTTATTTTTTAATTTTTAAATTTTT
Found at i:18028994 original size:109 final size:108
Alignment explanation
Indices: 18028793--18028996 Score: 250
Period size: 109 Copynumber: 1.9 Consensus size: 108
18028783 CTAATTATTC
* *
18028793 CATCATTTGGGCCAAATTAGAAATATTTGCTTATTTTTAATTTTTAATTTTTTTCACAATTTGGG
1 CATCATTTGGGCCAAATTAGAAATATTTGCTTATTTTTAATTTCTAA-TTTTTCCACAATTTGGG
*** *
18028858 CCTATTTAGAAATTCTTTTTTTATTTTTTTATTTTTAAATTTTT
65 CCTATTTAGAAATTCCCCTCTTATTTTTTTATTTTTAAATTTTT
* * * * *
18028902 CATCATTTGGGTCAATTTAGAAATATTTTCTTTTTTTTTAATTTCTAGA-TTTTCCACCATTTGG
1 CATCATTTGGGCCAAATTAGAAATATTTGC-TTATTTTTAATTTCTA-ATTTTTCCACAATTTGG
*
18028966 GCTTATTTAGAAACTTCCCCTCTT-TTTTTTT
64 GCCTATTTAGAAA-TTCCCCTCTTATTTTTTT
18028997 CTTTCTTGGA
Statistics
Matches: 80, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
109 59 0.74
110 20 0.25
111 1 0.01
ACGTcount: A:0.24, C:0.13, G:0.09, T:0.55
Consensus pattern (108 bp):
CATCATTTGGGCCAAATTAGAAATATTTGCTTATTTTTAATTTCTAATTTTTCCACAATTTGGGC
CTATTTAGAAATTCCCCTCTTATTTTTTTATTTTTAAATTTTT
Found at i:18031653 original size:16 final size:17
Alignment explanation
Indices: 18031632--18031663 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
18031622 CCTGTCCTAT
18031632 TATTTTTAT-TATTTTA
1 TATTTTTATATATTTTA
18031648 TATTTTTATATATTTT
1 TATTTTTATATATTTT
18031664 TTTAACAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (17 bp):
TATTTTTATATATTTTA
Found at i:18033969 original size:17 final size:17
Alignment explanation
Indices: 18033947--18033985 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
18033937 TATTTTTTTC
*
18033947 TTTTTT-TGTAATTTAAA
1 TTTTTTATGCAATTT-AA
18033964 TTTTTTATGCAATTTAA
1 TTTTTTATGCAATTTAA
18033981 TTTTT
1 TTTTT
18033986 GTAATTAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.67
Consensus pattern (17 bp):
TTTTTTATGCAATTTAA
Found at i:18034058 original size:30 final size:30
Alignment explanation
Indices: 18033999--18034060 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
18033989 ATTAATTTTT
*
18033999 ATTATATATATTTTATAATTTGATTAATTA
1 ATTATATATATTTTATAATTTAATTAATTA
*
18034029 ATTATATATATTTTTTAA-TTAATTAAATTA
1 ATTATATATATTTTATAATTTAATT-AATTA
18034059 AT
1 AT
18034061 CTTAAATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 5 0.17
30 24 0.83
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (30 bp):
ATTATATATATTTTATAATTTAATTAATTA
Found at i:18034646 original size:10 final size:10
Alignment explanation
Indices: 18034612--18034645 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
18034602 GAACGAAAGG
18034612 AAAGAAATGT
1 AAAGAAATGT
18034622 AAAGAAATGT
1 AAAGAAATGT
*
18034632 AAAGGAATGT
1 AAAGAAATGT
18034642 AAAG
1 AAAG
18034646 GGAACAAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.59, C:0.00, G:0.24, T:0.18
Consensus pattern (10 bp):
AAAGAAATGT
Found at i:18038172 original size:30 final size:30
Alignment explanation
Indices: 18038138--18038204 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 30
18038128 CAATAATTAC
**
18038138 TTAATTTTTAATTTACACTTAAATAAGTTT
1 TTAATTTTTAATTTACACTTAAATAAAATT
* *
18038168 TTAATTTTTAATTTATATTTAAATAAAATT
1 TTAATTTTTAATTTACACTTAAATAAAATT
18038198 TTAATTT
1 TTAATTT
18038205 ATATCTAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (30 bp):
TTAATTTTTAATTTACACTTAAATAAAATT
Found at i:18038201 original size:23 final size:24
Alignment explanation
Indices: 18038173--18038222 Score: 84
Period size: 23 Copynumber: 2.1 Consensus size: 24
18038163 AGTTTTTAAT
*
18038173 TTTTAATTTATATTTAAATAAA-A
1 TTTTAATTTATATCTAAATAAATA
18038196 TTTTAATTTATATCTAAATAAATA
1 TTTTAATTTATATCTAAATAAATA
18038220 TTT
1 TTT
18038223 AATATTAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 21 0.84
24 4 0.16
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (24 bp):
TTTTAATTTATATCTAAATAAATA
Found at i:18040032 original size:59 final size:59
Alignment explanation
Indices: 18039935--18040046 Score: 170
Period size: 59 Copynumber: 1.9 Consensus size: 59
18039925 TTAAACTATT
* * *
18039935 GAGTTTGATATTTGAGTCTATTGAGCTTTTATAACTTTAGGGTTTTGCCCTAGCGATAA
1 GAGTTTGATATTTAAATCTATTGAGCTTTTATAACTTTAGGGTTTTGACCTAGCGATAA
* **
18039994 GAGTTTGATATTTAAATCTATTTAGCTTTTATGGCTTTAGGGTTTTGACCTAG
1 GAGTTTGATATTTAAATCTATTGAGCTTTTATAACTTTAGGGTTTTGACCTAG
18040047 GTGAGCTAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
59 47 1.00
ACGTcount: A:0.23, C:0.11, G:0.21, T:0.45
Consensus pattern (59 bp):
GAGTTTGATATTTAAATCTATTGAGCTTTTATAACTTTAGGGTTTTGACCTAGCGATAA
Found at i:18046401 original size:18 final size:19
Alignment explanation
Indices: 18046375--18046412 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
18046365 TTTATTATAC
18046375 TATCAATTA-ATATTTAATT
1 TATCAATTATAT-TTTAATT
18046394 TATC-ATTATATTTTAATT
1 TATCAATTATATTTTAATT
18046412 T
1 T
18046413 TATTGAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (19 bp):
TATCAATTATATTTTAATT
Found at i:18048456 original size:21 final size:21
Alignment explanation
Indices: 18048432--18048474 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
18048422 ATATAATTTA
18048432 TCAATATTATCAAATTAATAT
1 TCAATATTATCAAATTAATAT
*
18048453 TCAATATTATTAAATTAATAT
1 TCAATATTATCAAATTAATAT
18048474 T
1 T
18048475 AATTAAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (21 bp):
TCAATATTATCAAATTAATAT
Found at i:18048478 original size:10 final size:11
Alignment explanation
Indices: 18048443--18048489 Score: 53
Period size: 10 Copynumber: 4.5 Consensus size: 11
18048433 CAATATTATC
18048443 AAATTAATATT
1 AAATTAATATT
* *
18048454 CAA-TATTATT
1 AAATTAATATT
18048464 AAATTAATATT
1 AAATTAATATT
*
18048475 -AATTAAAATT
1 AAATTAATATT
18048485 AAATT
1 AAATT
18048490 TTATATTATA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
10 17 0.59
11 12 0.41
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (11 bp):
AAATTAATATT
Found at i:18048485 original size:21 final size:21
Alignment explanation
Indices: 18048443--18048489 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
18048433 CAATATTATC
**
18048443 AAATTAATATTCAATATTATT
1 AAATTAATATTCAATAAAATT
18048464 AAATTAATATT-AATTAAAATT
1 AAATTAATATTCAA-TAAAATT
18048485 AAATT
1 AAATT
18048490 TTATATTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 2 0.09
21 21 0.91
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (21 bp):
AAATTAATATTCAATAAAATT
Found at i:18048854 original size:142 final size:144
Alignment explanation
Indices: 18048596--18048859 Score: 460
Period size: 142 Copynumber: 1.8 Consensus size: 144
18048586 CTAACCAAAT
* *
18048596 TTCATCCTCTATTCCATTCTAATAAATTAAATTTCATAATATATATATTCTATTCTTCTTATTTT
1 TTCATCCTCTATTCCATTCTAATAAATCAAATCTCATAATATATATATTCTATTCTTCTTATTTT
18048661 CTATTTGAACAAAATACCAATTTCATTGTCCCTTTATTTCATCCCGCAAACCAAATAATATTAAA
66 CTATTTGAACAAAATACCAATTTCATTGTCCCTTTATTTCATCCCGCAAACCAAATAATATTAAA
18048726 CATATTAATATTAA
131 CATATTAATATTAA
18048740 TTCATCCTCTATTCCATTCTAATAAATCAAATCTCAT-A-ATATATATTCTATTCTTCTTATTTT
1 TTCATCCTCTATTCCATTCTAATAAATCAAATCTCATAATATATATATTCTATTCTTCTTATTTT
* * * *
18048803 CTATTTGAGCAAAATGCCAATTTTATTGTCCCTTTATTTCATTCCGCAAACCAAATA
66 CTATTTGAACAAAATACCAATTTCATTGTCCCTTTATTTCATCCCGCAAACCAAATA
18048860 TGGTACAAAC
Statistics
Matches: 114, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
142 78 0.68
143 1 0.01
144 35 0.31
ACGTcount: A:0.34, C:0.20, G:0.03, T:0.43
Consensus pattern (144 bp):
TTCATCCTCTATTCCATTCTAATAAATCAAATCTCATAATATATATATTCTATTCTTCTTATTTT
CTATTTGAACAAAATACCAATTTCATTGTCCCTTTATTTCATCCCGCAAACCAAATAATATTAAA
CATATTAATATTAA
Found at i:18055451 original size:20 final size:19
Alignment explanation
Indices: 18055422--18055459 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
18055412 GGAAGCGAAG
18055422 GAAAGGAAAGGAAAATAAAT
1 GAAAGGAAAGG-AAATAAAT
*
18055442 GAAAGTAAAGGAAATAAA
1 GAAAGGAAAGGAAATAAA
18055460 AAAACCTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.66, C:0.00, G:0.24, T:0.11
Consensus pattern (19 bp):
GAAAGGAAAGGAAATAAAT
Found at i:18062803 original size:3 final size:3
Alignment explanation
Indices: 18062793--18062823 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
18062783 AAAAACCTAC
18062793 ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
18062824 GGTTAGAAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:18064074 original size:108 final size:108
Alignment explanation
Indices: 18063885--18064096 Score: 257
Period size: 108 Copynumber: 2.0 Consensus size: 108
18063875 AAAGAAGAAG
* * * *
18063885 AAGACTTTCTTAGAAGACTTACAGGTAAAACTCATGAATTGTTTTATATTGAAATAACATATAAC
1 AAGACTTTCCTAGAAGACTTACAGGTAAAACTCATGAATTGTTTCACATTGAAAAAACATATAAC
* * * * *
18063950 AATGAGCTTTTACCCACCTTTTTTTATCTAGCTCAAATCGGAT
66 AATGAACTTCTACCCACATTTTATCATCTAGCTCAAATCGGAT
* * * * *
18063993 AAGACTTTCCTAGAGGACTTATAGGTGAAATTCATGAATT-TCTTCACATTGAAAAAACATGTAA
1 AAGACTTTCCTAGAAGACTTACAGGTAAAACTCATGAATTGT-TTCACATTGAAAAAACATATAA
*
18064057 -AGGTGAACTTCTACCCACATTTTATCATCTAGCTCAAATC
65 CA-ATGAACTTCTACCCACATTTTATCATCTAGCTCAAATC
18064097 CTATTGCCTT
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
107 2 0.02
108 85 0.98
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.34
Consensus pattern (108 bp):
AAGACTTTCCTAGAAGACTTACAGGTAAAACTCATGAATTGTTTCACATTGAAAAAACATATAAC
AATGAACTTCTACCCACATTTTATCATCTAGCTCAAATCGGAT
Found at i:18064834 original size:20 final size:20
Alignment explanation
Indices: 18064790--18064834 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
18064780 TTCTAATGCA
18064790 TATTTTACCTTTTTCCTTCT
1 TATTTTACCTTTTTCCTTCT
*
18064810 T-TTTTATCCTTTTTTCTT-T
1 TATTTTA-CCTTTTTCCTTCT
18064829 TATTTT
1 TATTTT
18064835 CTTTCACTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.09, C:0.18, G:0.00, T:0.73
Consensus pattern (20 bp):
TATTTTACCTTTTTCCTTCT
Found at i:18066057 original size:60 final size:59
Alignment explanation
Indices: 18065867--18066088 Score: 308
Period size: 60 Copynumber: 3.8 Consensus size: 59
18065857 TGCTTTTATA
* *
18065867 CAAGGAAAATTGATACTTTTAACTTTTCCTC--AAAATATTTTTTAG-AAACTTTAATTT
1 CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAAATATTTTTTAGAAAAC-TTATTTT
* * *
18065924 CAAGGAAAATTAATACTTTCAACTTTTCCTTAAAAAACCATTTTTT-GAAAACTTATTTT
1 CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAAA-TATTTTTTAGAAAACTTATTTT
*
18065983 TAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTTTAGAAAACTTATTTT
1 CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAA-ATATTTTTTAGAAAACTTATTTT
* *
18066043 CAAGAAAAATTGATACTTTCAATTTTTCCTCAAAAATATATTTTTT
1 CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAA-ATATTTTTT
18066089 TGAATTTTAT
Statistics
Matches: 147, Mismatches: 12, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
57 28 0.19
59 51 0.35
60 68 0.46
ACGTcount: A:0.38, C:0.13, G:0.06, T:0.43
Consensus pattern (59 bp):
CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAAATATTTTTTAGAAAACTTATTTT
Found at i:18066156 original size:3 final size:3
Alignment explanation
Indices: 18066148--18066197 Score: 57
Period size: 3 Copynumber: 15.7 Consensus size: 3
18066138 CTAACCAATA
18066148 AAT AAT AAT AAT AAT AAT AAT AA- AAT AAT AAAT AAAT AAAT AAAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT -AAT -AAT -AAT AAT
18066196 AA
1 AA
18066198 AAAAATAAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
2 2 0.04
3 28 0.62
4 15 0.33
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:18066176 original size:8 final size:8
Alignment explanation
Indices: 18066148--18066209 Score: 51
Period size: 8 Copynumber: 7.9 Consensus size: 8
18066138 CTAACCAATA
18066148 AATAATAAT
1 AATAA-AAT
18066157 AATAATAAT
1 AATAA-AAT
18066166 AATAAAAT
1 AATAAAAT
18066174 AAT-AAAT
1 AATAAAAT
18066181 AA-ATAAAT
1 AATA-AAAT
*
18066189 AA-ATAAT
1 AATAAAAT
*
18066196 AAAAAAAT
1 AATAAAAT
18066204 AA-AAAA
1 AATAAAA
18066210 AAACCCTGAG
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
7 15 0.31
8 19 0.40
9 14 0.29
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:18066179 original size:30 final size:30
Alignment explanation
Indices: 18066144--18066205 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
18066134 TAATCTAACC
*
18066144 AATAAAT-AAT-AATAATAATAATAATAAAAT
1 AATAAATAAATAAAT-A-AATAATAAAAAAAT
18066174 AATAAATAAATAAATAAATAATAAAAAAAT
1 AATAAATAAATAAATAAATAATAAAAAAAT
18066204 AA
1 AA
18066206 AAAAAAACCC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
30 22 0.76
31 4 0.14
32 3 0.10
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (30 bp):
AATAAATAAATAAATAAATAATAAAAAAAT
Found at i:18066206 original size:15 final size:15
Alignment explanation
Indices: 18066144--18066206 Score: 62
Period size: 15 Copynumber: 4.4 Consensus size: 15
18066134 TAATCTAACC
*
18066144 AATAAATAAT--AAT
1 AATAAATAATAAAAA
*
18066157 AAT-AATAATAATAA
1 AATAAATAATAAAAA
*
18066171 AAT-AATAAATAAATA
1 AATAAAT-AATAAAAA
18066186 AATAAATAATAAAAA
1 AATAAATAATAAAAA
18066201 AATAAA
1 AATAAA
18066207 AAAAAACCCT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
12 6 0.15
13 3 0.07
14 7 0.17
15 22 0.54
16 3 0.07
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (15 bp):
AATAAATAATAAAAA
Found at i:18066666 original size:31 final size:31
Alignment explanation
Indices: 18066631--18066689 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
18066621 TGGGTAGCTG
*
18066631 ACCGAAAAATTCAAACTTGGTCGAAAAAGTC
1 ACCGAAAAATTCAAACTTGGTCAAAAAAGTC
* * *
18066662 ACCGAAAATTTTAAACTTTGTCAAAAAA
1 ACCGAAAAATTCAAACTTGGTCAAAAAA
18066690 TTCAACTGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.47, C:0.17, G:0.12, T:0.24
Consensus pattern (31 bp):
ACCGAAAAATTCAAACTTGGTCAAAAAAGTC
Found at i:18067099 original size:14 final size:13
Alignment explanation
Indices: 18067071--18067230 Score: 81
Period size: 14 Copynumber: 11.1 Consensus size: 13
18067061 TAATTAGATA
*
18067071 AATAA-AAATATT
1 AATAATAAATAAT
18067083 AATAGATAAATAAT
1 AATA-ATAAATAAT
18067097 AATAAGTGATAAATAAT
1 AAT-A---ATAAATAAT
18067114 AATATATAAATAGAT
1 AATA-ATAAATA-AT
18067129 AACTAAT-AATAAAT
1 AA-TAATAAAT-AAT
* *
18067143 ACATACATATACTAAC
1 A-ATA-ATA-AATAAT
*
18067159 AGATAAATAAAAAAT
1 A-AT-AATAAATAAT
*
18067174 AAAAATAAATATAT
1 AATAATAAATA-AT
* *
18067188 ATTAATAAATAGT
1 AATAATAAATAAT
18067201 AATAATAAATAAAT
1 AATAATAAAT-AAT
18067215 AAATAAATAAATAAT
1 -AAT-AATAAATAAT
18067230 A
1 A
18067231 TAGAAGATAT
Statistics
Matches: 116, Mismatches: 15, Indels: 32
0.71 0.09 0.20
Matches are distributed among these distances:
12 4 0.03
13 18 0.16
14 39 0.34
15 21 0.18
16 18 0.16
17 16 0.14
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.29
Consensus pattern (13 bp):
AATAATAAATAAT
Found at i:18067136 original size:39 final size:37
Alignment explanation
Indices: 18067067--18067140 Score: 112
Period size: 39 Copynumber: 1.9 Consensus size: 37
18067057 AAAATAATTA
*
18067067 GATAAATAAAAATATTAATAGATAAATAATAATAAGT
1 GATAAATAAAAATATAAATAGATAAATAATAATAAGT
*
18067104 GATAAATAATAATATATAAATAGATAACTAATAATAA
1 GATAAATAA-AA-ATATAAATAGATAAATAATAATAA
18067141 ATACATACAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
37 9 0.27
38 2 0.06
39 22 0.67
ACGTcount: A:0.62, C:0.01, G:0.07, T:0.30
Consensus pattern (37 bp):
GATAAATAAAAATATAAATAGATAAATAATAATAAGT
Found at i:18067168 original size:4 final size:4
Alignment explanation
Indices: 18067161--18067228 Score: 63
Period size: 4 Copynumber: 17.0 Consensus size: 4
18067151 ATACTAACAG
*
18067161 ATAA ATAA A-AA AT-A A-AA ATAA ATATA TATTA ATAA ATAGTA AT-A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATA-A -ATAA ATAA ATA--A ATAA
18067205 ATAA ATAA ATAA ATAA ATAA ATAA
1 ATAA ATAA ATAA ATAA ATAA ATAA
18067229 TATAGAAGAT
Statistics
Matches: 54, Mismatches: 2, Indels: 16
0.75 0.03 0.22
Matches are distributed among these distances:
3 10 0.19
4 37 0.69
5 2 0.04
6 5 0.09
ACGTcount: A:0.71, C:0.00, G:0.01, T:0.28
Consensus pattern (4 bp):
ATAA
Found at i:18067196 original size:27 final size:25
Alignment explanation
Indices: 18067161--18067228 Score: 73
Period size: 27 Copynumber: 2.6 Consensus size: 25
18067151 ATACTAACAG
18067161 ATAAATAAAAAATAAAAATAAATATA
1 ATAAATAAAAAATAAAAATAAATA-A
* * * *
18067187 TATTAATAAATAGTAATAATAAATAA
1 -ATAAATAAAAAATAAAAATAAATAA
18067213 ATAAATAAATAAATAA
1 ATAAATAAA-AAATAA
18067229 TATAGAAGAT
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
25 8 0.24
26 5 0.15
27 20 0.61
ACGTcount: A:0.71, C:0.00, G:0.01, T:0.28
Consensus pattern (25 bp):
ATAAATAAAAAATAAAAATAAATAA
Found at i:18067196 original size:31 final size:30
Alignment explanation
Indices: 18067058--18067228 Score: 84
Period size: 31 Copynumber: 5.6 Consensus size: 30
18067048 AATTAAAAGA
* * *
18067058 AAATAATTAGATAAATAAAAATATTAATAGAT
1 AAATAAATAAATAAATAAAAA-A-TAATAAAT
* *
18067090 AAAT-AAT-AATAAGTGATAAATAATAATATAT
1 AAATAAATAAATAA---ATAAAAAATAATAAAT
* * * *
18067121 AAATAGATAACT-AATAATAAATACATACAT
1 AAATAAATAAATAAATAAAAAATA-ATAAAT
* * *
18067151 ATACT-AACAGATAAATAAAAAATAA-AAAT
1 A-AATAAATAAATAAATAAAAAATAATAAAT
* **
18067180 AAATATATATTAATAAAT-AGTAATAATAAAT
1 AAATA-A-ATAAATAAATAAAAAATAATAAAT
18067211 AAATAAATAAATAAATAA
1 AAATAAATAAATAAATAA
18067229 TATAGAAGAT
Statistics
Matches: 103, Mismatches: 23, Indels: 28
0.67 0.15 0.18
Matches are distributed among these distances:
28 2 0.02
29 21 0.20
30 23 0.22
31 41 0.40
32 8 0.08
33 8 0.08
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.29
Consensus pattern (30 bp):
AAATAAATAAATAAATAAAAAATAATAAAT
Found at i:18067686 original size:41 final size:41
Alignment explanation
Indices: 18067629--18067746 Score: 191
Period size: 41 Copynumber: 2.9 Consensus size: 41
18067619 ATAAACAAAG
*
18067629 CTCCTTTAATCAGAGGCATCACAACTTTGGAAAATAGATTA
1 CTCCTTTAACCAGAGGCATCACAACTTTGGAAAATAGATTA
* *
18067670 CTCCTCTAACCAGAGGCATCACAACTTTGGAAAATAGATTG
1 CTCCTTTAACCAGAGGCATCACAACTTTGGAAAATAGATTA
* *
18067711 CTCCTTTAACTAGAGGCATCACAACTTTGAAAAATA
1 CTCCTTTAACCAGAGGCATCACAACTTTGGAAAATA
18067747 AATTGCTTAT
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 71 1.00
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.27
Consensus pattern (41 bp):
CTCCTTTAACCAGAGGCATCACAACTTTGGAAAATAGATTA
Found at i:18067745 original size:125 final size:125
Alignment explanation
Indices: 18067459--18067748 Score: 320
Period size: 125 Copynumber: 2.3 Consensus size: 125
18067449 TTGATCAAAA
* * * *
18067459 CTCCTCTAAGC-AGATGCTCAACGACTTTGAAAAACATAAACAAAGCTCTTTTAATCAGAGGCTC
1 CTCCTCTAA-CTAGAGGCTCTACAACTTTG-AAAA-ATAAACAAAGCTCCTTTAATCAGAGGCTC
* * * * * *
18067523 AACAACTTTGAAAATAAATGGCTCTTCTAAGCAGAGGCTCAACTACTTTTGGGAAGTAAATTG
63 AACAACTTTGAAAATAAATGACTCCTCTAACCAGAGGCTCAACAACTTTTGGAAAATAAATTG
* * * *
18067586 CTCCTCTAATTAGAGGCTCTGCGACTTTGCAAAATAAACAAAGCTCCTTTAATCAGAGGCATC-A
1 CTCCTCTAACTAGAGGCTCTACAACTTTGAAAAATAAACAAAGCTCCTTTAATCAGAGGC-TCAA
* * *
18067650 CAACTTTGGAAAATAGATTACTCCTCTAACCAGAGGCATC-ACAAC-TTTGGAAAATAGATTG
65 CAACTTT-GAAAATAAATGACTCCTCTAACCAGAGGC-TCAACAACTTTTGGAAAATAAATTG
*
18067711 CTCCTTTAACTAGAGGCATC-ACAACTTTGAAAAATAAA
1 CTCCTCTAACTAGAGGC-TCTACAACTTTGAAAAATAAA
18067749 TTGCTTATTG
Statistics
Matches: 138, Mismatches: 20, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
125 77 0.56
126 35 0.25
127 26 0.19
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.27
Consensus pattern (125 bp):
CTCCTCTAACTAGAGGCTCTACAACTTTGAAAAATAAACAAAGCTCCTTTAATCAGAGGCTCAAC
AACTTTGAAAATAAATGACTCCTCTAACCAGAGGCTCAACAACTTTTGGAAAATAAATTG
Found at i:18067752 original size:41 final size:41
Alignment explanation
Indices: 18067515--18067753 Score: 186
Period size: 41 Copynumber: 5.8 Consensus size: 41
18067505 TCTTTTAATC
*
18067515 AGAGGCTCAACAACTTT-GAAAATAAATGGCT-CTTCTAAGC-
1 AGAGGCTCAACAACTTTGGAAAATAAATTGCTCCTT-TAA-CT
* * * * *
18067555 AGAGGCTCAACTACTTTTGGGAAGTAAATTGCTCCTCTAATT
1 AGAGGCTCAACAAC-TTTGGAAAATAAATTGCTCCTTTAACT
** * * **
18067597 AGAGGCTCTGCGACTTTGCAAAATAAACAAAGCTCCTTTAA-T
1 AGAGGCTCAACAACTTTGGAAAAT-AA-ATTGCTCCTTTAACT
* * * *
18067639 CAGAGGCATC-ACAACTTTGGAAAATAGATTACTCCTCTAACC
1 -AGAGGC-TCAACAACTTTGGAAAATAAATTGCTCCTTTAACT
*
18067681 AGAGGCATC-ACAACTTTGGAAAATAGATTGCTCCTTTAACT
1 AGAGGC-TCAACAACTTTGGAAAATAAATTGCTCCTTTAACT
*
18067722 AGAGGCATC-ACAACTTTGAAAAATAAATTGCT
1 AGAGGC-TCAACAACTTTGGAAAATAAATTGCT
18067754 TATTGACAAT
Statistics
Matches: 161, Mismatches: 29, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
40 13 0.08
41 87 0.54
42 29 0.18
43 30 0.19
44 2 0.01
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.27
Consensus pattern (41 bp):
AGAGGCTCAACAACTTTGGAAAATAAATTGCTCCTTTAACT
Found at i:18068713 original size:17 final size:17
Alignment explanation
Indices: 18068693--18068726 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
18068683 TTTCATTCAC
18068693 TTTTT-TTTTTCATTTT
1 TTTTTCTTTTTCATTTT
18068709 TTTTTCTTTTTCATTTT
1 TTTTTCTTTTTCATTTT
18068726 T
1 T
18068727 CCATTTCAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.06, C:0.09, G:0.00, T:0.85
Consensus pattern (17 bp):
TTTTTCTTTTTCATTTT
Found at i:18075921 original size:15 final size:15
Alignment explanation
Indices: 18075897--18075927 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
18075887 TGTTAAGTGT
*
18075897 AATGAGTGAGAATGC
1 AATGAATGAGAATGC
18075912 AATGAATGAGAATGC
1 AATGAATGAGAATGC
18075927 A
1 A
18075928 TGTATGCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.29, T:0.19
Consensus pattern (15 bp):
AATGAATGAGAATGC
Found at i:18079150 original size:51 final size:52
Alignment explanation
Indices: 18079085--18079210 Score: 121
Period size: 58 Copynumber: 2.3 Consensus size: 52
18079075 GATATAAACT
18079085 CTTTTCTCTTCAAAAATTCGTT-GCTT-TTGTACAAGGAAAATTGATACTTTCAA
1 CTTTTC-C-TCAAAAATTCGTTAGCTTATT-TACAAGGAAAATTGATACTTTCAA
** **
18079138 CTTTTCCTCAAAAATATTTTTTAGAACGCTTATTTTTAAGGAAAATTGATACTTTCAA
1 CTTTTCCTC-AAAA-ATTCGTT---A-GCTTATTTACAAGGAAAATTGATACTTTCAA
18079196 CTTTTCCTCAAAAAT
1 CTTTTCCTCAAAAAT
18079211 ATATTTTTTT
Statistics
Matches: 61, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
51 2 0.03
52 5 0.08
53 11 0.18
56 2 0.03
57 4 0.07
58 35 0.57
59 2 0.03
ACGTcount: A:0.33, C:0.17, G:0.09, T:0.42
Consensus pattern (52 bp):
CTTTTCCTCAAAAATTCGTTAGCTTATTTACAAGGAAAATTGATACTTTCAA
Found at i:18079244 original size:5 final size:5
Alignment explanation
Indices: 18079236--18079301 Score: 57
Period size: 5 Copynumber: 12.8 Consensus size: 5
18079226 TTATTTAAAG
*
18079236 AAAAT AAAAT -AAA- AAAAT AAAAATT AAAAT AAAGA- GAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT -AAAA-T AAAAT AAA-AT AAAAT AAAAT
18079281 AAGAAT AAAAAT AAAAT AAAA
1 AA-AAT -AAAAT AAAAT AAAA
18079302 AGTATTAAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 16
0.74 0.03 0.23
Matches are distributed among these distances:
4 7 0.14
5 26 0.51
6 15 0.29
7 3 0.06
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:18079257 original size:6 final size:6
Alignment explanation
Indices: 18079236--18079302 Score: 55
Period size: 6 Copynumber: 10.7 Consensus size: 6
18079226 TTATTTAAAG
* * * *
18079236 AAAATA AAATAAA AAAATA AAAATT AAAATA AAGAGAAA TAAAATA AGAATA
1 AAAATA AAA-ATA AAAATA AAAATA AAAATA AA-A-ATA -AAAATA AAAATA
18079288 AAAAT- AAAATA AAAA
1 AAAATA AAAATA AAAA
18079303 GTATTAAACA
Statistics
Matches: 48, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
5 5 0.10
6 30 0.62
7 8 0.17
8 3 0.06
9 2 0.04
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:18079264 original size:12 final size:11
Alignment explanation
Indices: 18079236--18079302 Score: 63
Period size: 12 Copynumber: 6.4 Consensus size: 11
18079226 TTATTTAAAG
18079236 AAAATAAAAT-
1 AAAATAAAATA
18079246 -AAA-AAAATA
1 AAAATAAAATA
18079255 AAAATTAAAATA
1 AAAA-TAAAATA
* *
18079267 AAGA-GAAAT-
1 AAAATAAAATA
18079276 AAAATAAGAATA
1 AAAATAA-AATA
18079288 AAAATAAAATA
1 AAAATAAAATA
18079299 AAAA
1 AAAA
18079303 GTATTAAACA
Statistics
Matches: 46, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
8 5 0.11
9 6 0.13
10 8 0.17
11 11 0.24
12 16 0.35
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.16
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:18079339 original size:3 final size:3
Alignment explanation
Indices: 18079331--18079378 Score: 60
Period size: 3 Copynumber: 14.7 Consensus size: 3
18079321 CTAACCAATA
18079331 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAAT AAAT AAAT AAAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT -AAT -AAT -AAT AAT AA
18079379 AAAAATGAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 29 0.66
4 15 0.34
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:18079351 original size:15 final size:16
Alignment explanation
Indices: 18079327--18079378 Score: 70
Period size: 15 Copynumber: 3.1 Consensus size: 16
18079317 TAATCTAACC
18079327 AATAAATAATAATAAT
1 AATAAATAATAATAAT
18079343 AAT-AATAATAATAAT
1 AATAAATAATAATAAT
18079358 AAATAAATAAATAAATAAT
1 -AATAAAT-AAT-AATAAT
18079377 AA
1 AA
18079379 AAAAATGAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
15 12 0.38
16 6 0.19
17 3 0.09
18 5 0.16
19 6 0.19
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AATAAATAATAATAAT
Found at i:18079384 original size:15 final size:14
Alignment explanation
Indices: 18079327--18079384 Score: 53
Period size: 15 Copynumber: 3.8 Consensus size: 14
18079317 TAATCTAACC
18079327 AATAAATAATAATAAT
1 AATAAA-AA-AATAAT
*
18079343 AATAATAATAATAAT
1 AATAA-AAAAATAAT
*
18079358 AAATAAATAAATAAAT
1 -AATAAAAAAAT-AAT
18079374 AATAAAAAAAT
1 AATAAAAAAAT
18079385 GAAAAAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
15 20 0.57
16 14 0.40
17 1 0.03
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (14 bp):
AATAAAAAAATAAT
Found at i:18080237 original size:21 final size:21
Alignment explanation
Indices: 18080210--18080299 Score: 94
Period size: 21 Copynumber: 4.3 Consensus size: 21
18080200 AAATCAAATC
*
18080210 AAATAAAAAATGTTAATAGAT
1 AAATAAAAAATATTAATAGAT
* *
18080231 AATTAAAAAA-AATAATTAGAT
1 AAATAAAAAATATTAA-TAGAT
18080252 AAAT-AAAAATATTAATAGAT
1 AAATAAAAAATATTAATAGAT
* * *
18080272 AAATACTAATATATAAATAGAT
1 AAATA-AAAAATATTAATAGAT
18080294 AAATAA
1 AAATAA
18080300 TAATAAATAC
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
20 17 0.30
21 21 0.38
22 18 0.32
ACGTcount: A:0.64, C:0.01, G:0.06, T:0.29
Consensus pattern (21 bp):
AAATAAAAAATATTAATAGAT
Found at i:18080265 original size:17 final size:17
Alignment explanation
Indices: 18080234--18080308 Score: 59
Period size: 18 Copynumber: 4.4 Consensus size: 17
18080224 AATAGATAAT
18080234 TAAA-AAAAATAATTAGA
1 TAAATAAAAATAATTA-A
18080251 TAAATAAAAAT-ATTAA
1 TAAATAAAAATAATTAA
* *
18080267 TAGATAAATACTAA-TATA
1 TAAATAAA-AATAATTA-A
18080285 TAAATAGATAAATAA-TAA
1 TAAATA-A-AAATAATTAA
18080303 TAAATA
1 TAAATA
18080309 CATACATATA
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
16 8 0.17
17 12 0.25
18 20 0.42
19 7 0.15
20 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.29
Consensus pattern (17 bp):
TAAATAAAAATAATTAA
Found at i:18080290 original size:22 final size:21
Alignment explanation
Indices: 18080224--18080304 Score: 74
Period size: 22 Copynumber: 3.8 Consensus size: 21
18080214 AAAAAATGTT
* * * *
18080224 AATAGATAATTAAAAAAAATA
1 AATAGATAAATATAATATATA
* * *
18080245 ATTAGATAAATA-AAAATATT
1 AATAGATAAATATAATATATA
18080265 AATAGATAAATACTAATATATA
1 AATAGATAAATA-TAATATATA
18080287 AATAGATAAATAATAATA
1 AATAGATAAAT-ATAATA
18080305 AATACATACA
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
20 17 0.34
21 10 0.20
22 22 0.44
23 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (21 bp):
AATAGATAAATATAATATATA
Found at i:18080293 original size:42 final size:42
Alignment explanation
Indices: 18080210--18080342 Score: 114
Period size: 42 Copynumber: 3.2 Consensus size: 42
18080200 AAATCAAATC
* * * *
18080210 AAATAAAAAATGTTAATAGATAATTA-AAAAAAATAATTAGAT
1 AAAT-AAAAATATTAATAGATAAATACTAAAAAATAAATAGAT
* *
18080252 AAATAAAAATATTAATAGATAAATACTAATATATAAATAGAT
1 AAATAAAAATATTAATAGATAAATACTAAAAAATAAATAGAT
* * * *
18080294 AAATAATAATA--AATACATACATATACTAACAGATAAATA-A-
1 AAATAAAAATATTAATAGATA-A-ATACTAAAAAATAAATAGAT
18080334 AAATAAAAA
1 AAATAAAAA
18080343 AAAATATATT
Statistics
Matches: 77, Mismatches: 11, Indels: 8
0.80 0.11 0.08
Matches are distributed among these distances:
40 15 0.19
41 21 0.27
42 41 0.53
ACGTcount: A:0.65, C:0.04, G:0.05, T:0.27
Consensus pattern (42 bp):
AAATAAAAATATTAATAGATAAATACTAAAAAATAAATAGAT
Found at i:18082398 original size:27 final size:29
Alignment explanation
Indices: 18082346--18082399 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
18082336 GCTGGACCCT
*
18082346 CAAATCCTGTATCTCAAACACCCATAACA
1 CAAATCCAGTATCTCAAACACCCATAACA
*
18082375 CAAATCCAGT-TCTCACA-ACCCATAA
1 CAAATCCAGTATCTCAAACACCCATAA
18082400 ATGCCACTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 8 0.35
28 6 0.26
29 9 0.39
ACGTcount: A:0.41, C:0.35, G:0.04, T:0.20
Consensus pattern (29 bp):
CAAATCCAGTATCTCAAACACCCATAACA
Found at i:18088020 original size:141 final size:141
Alignment explanation
Indices: 18087662--18088051 Score: 489
Period size: 143 Copynumber: 2.7 Consensus size: 141
18087652 GAAAATTACA
* * * * *
18087662 AAATTACTAAAATACCCTTTAGGGGTATTTTCGTAATTTGACCTTCTTGAGCTCA-GATTTTTAT
1 AAATTACCAAAATACCCCTTAGGGGTATTTTTGTAATTTGACCTT-TCGAGCT-AGGATTTTCAT
* * *
18087726 GAAACTTTTCAGATCTTAATTTGATAATATTTCATGATTTTTGTGCATTTGAAATCATAGTAGTA
64 GAAACTTTTTAGATCTTAATTTAATAATATTTCATGATTTTTGTGCATTTGAAATCATAGCAGTA
18087791 CCCCAAAAACCATG
129 -CCCAAAAACCATG
* * * * *
18087805 AAATTACCAAAATGCCCCTTAGGGGTATTTTTGTAATTTGGCCTTTCTAAGCTCGAATTTTCATG
1 AAATTACCAAAATACCCCTTAGGGGTATTTTTGTAATTTGACCTTTC-GAGCTAGGATTTTCATG
*
18087870 AAACCTTTTAGATCTTAATTTAATAATATTTCATGATTTTTGGTGCATTTGAAATCATAGCAGTA
65 AAACTTTTTAGATCTTAATTTAATAATATTTCATGATTTTT-GTGCATTTGAAATCATAGCAGTA
******
18087935 -CCAAGTGGTGTG
129 CCCAAAAACCATG
*
18087947 AAATTACCAAAATACCCCTTA-GGGTATTTTTGTAATTTGACCTTATCGGGCTAGGATTTTCATG
1 AAATTACCAAAATACCCCTTAGGGGTATTTTTGTAATTTGACCTT-TCGAGCTAGGATTTTCATG
* * *
18088011 AAACTTTTTAGATCTAAATTTTATAATATTTCATGACTTTT
65 AAACTTTTTAGATCTTAATTTAATAATATTTCATGATTTTT
18088052 CATGTTTTAA
Statistics
Matches: 213, Mismatches: 30, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
141 72 0.34
142 29 0.14
143 90 0.42
144 22 0.10
ACGTcount: A:0.30, C:0.15, G:0.14, T:0.41
Consensus pattern (141 bp):
AAATTACCAAAATACCCCTTAGGGGTATTTTTGTAATTTGACCTTTCGAGCTAGGATTTTCATGA
AACTTTTTAGATCTTAATTTAATAATATTTCATGATTTTTGTGCATTTGAAATCATAGCAGTACC
CAAAAACCATG
Found at i:18095218 original size:22 final size:22
Alignment explanation
Indices: 18095192--18095237 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
18095182 TTAAGGACCT
*
18095192 TTTATGATTTTACTTTAATAAG
1 TTTATGATTTAACTTTAATAAG
18095214 TTTATGATTTAACTTTAATAAG
1 TTTATGATTTAACTTTAATAAG
18095236 TT
1 TT
18095238 GTACTAAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.04, G:0.09, T:0.54
Consensus pattern (22 bp):
TTTATGATTTAACTTTAATAAG
Found at i:18098807 original size:21 final size:21
Alignment explanation
Indices: 18098782--18098858 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
18098772 TAGAAATCTT
* *
18098782 GCATGCTCTTGGTCTATTTTA
1 GCATGCTCTTGTTCAATTTTA
* * *
18098803 ACATGTTCTTCTTCAATTTTA
1 GCATGCTCTTGTTCAATTTTA
* *
18098824 GCATGCTCTTGCTCAATTCTA
1 GCATGCTCTTGTTCAATTTTA
18098845 GCATGCTCTTGTTC
1 GCATGCTCTTGTTC
18098859 TCTTTTTGCT
Statistics
Matches: 45, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 45 1.00
ACGTcount: A:0.17, C:0.23, G:0.14, T:0.45
Consensus pattern (21 bp):
GCATGCTCTTGTTCAATTTTA
Found at i:18099936 original size:161 final size:161
Alignment explanation
Indices: 18099442--18101348 Score: 1835
Period size: 161 Copynumber: 11.9 Consensus size: 161
18099432 ATTTAATATC
* * *
18099442 ATCCAAACTATTAAAATAGAACAATAATAGCAAATTTACGTTTTTGCCTTTTAACGACA-AAAAA
1 ATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGCATTTTTGCCTTTTAACGACACAAAAA
* * * * * *
18099506 ATATTAAACA-AAAGTAAA-TAGCAACTTTTTCACATATATCAACTATGGAAACCAAGTTCAACC
66 GTCTTAAACAGACA-TAAACGA-CAACTTTTTCACACATATCAACTATGGAAACCAAGTTCAATC
*
18099569 ATTC-GAACAAGTTTAATATAATGTATTGAAGCT
129 ATTCAG-ACAAGTTTAATATCATGTATTGAAGCT
* **
18099602 ATCCAAATTGTTAAAATAGAA-AATAATAATAAATTTGCATTTTTGCCTTTTAACGACACAAAAA
1 ATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGCATTTTTGCCTTTTAACGACACAAAAA
* * ** * * * * *
18099666 ATCTTAAACAAAGGTAAACAATAACTTTTTCACACATAT-AATTGTGGAAACTAAGTTCAATCAT
66 GTCTTAAACAGACATAAACGACAACTTTTTCACACATATCAACTATGGAAACCAAGTTCAATCAT
*
18099730 TCAGACAAGTTTAATATCGTGTATTGAAGCT
131 TCAGACAAGTTTAATATCATGTATTGAAGCT
* * * * * * * *
18099761 ATCCAAACTGTTAAAATAGCATAATAATAGTAATTTTACATTTTTACCTTTTAATGGCACAAAAA
1 ATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGCATTTTTGCCTTTTAACGACACAAAAA
* * * *
18099826 GTTTTAAACAGACATAAACGATAACTTTTTCACACATTTCAACTATGGAAACCAAGTTCAAACAT
66 GTCTTAAACAGACATAAACGACAACTTTTTCACACATATCAACTATGGAAACCAAGTTCAATCAT
* *
18099891 TCAGACAACTTTAATATTATGTATTGAAGGC-
131 TCAGACAAGTTTAATATCATGTATTGAA-GCT
* * * * * ** *
18099922 ATCCAAATTGTTAAAACAGAACAATAACAGTAAATTTCCATTTTCACCTTTTAATGACACAAAAA
1 ATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGCATTTTTGCCTTTTAACGACAC----A
* * ** * * * *
18099987 AAAAATCTTAAACAAAGGTAAACAACAACTTTTTCACGCATATCAATTGTGGAAACCAAGTTCAA
62 AAAAGTCTTAAACAGACATAAACGACAACTTTTTCACACATATCAACTATGGAAACCAAGTTCAA
* * *
18100052 TCATTCGGATAAGTTTAATATCATGTGTTGAAGCT
127 TCATTCAGACAAGTTTAATATCATGTATTGAAGCT
* * * *
18100087 ATCCAAACTATTAAAAGAGAACAATAATAGCAATTTTACATTTTTGGCCTTTTAACGACACAAAA
1 ATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGCATTTTT-GCCTTTTAACGACACAAAA
* * ** * ** *
18100152 AATTTTAAACAGAGGTAAA-TAGCAACTTTTTCACACATATCAACTATGGAAACCAAGTTTGATT
65 AGTCTTAAACAGACATAAACGA-CAACTTTTTCACACATATCAACTATGGAAACCAAGTTCAATC
* *
18100216 ATTCAGACAAATTTAATATCATGTGTTGAAGCT
129 ATTCAGACAAGTTTAATATCATGTATTGAAGCT
* * * * * *
18100249 ATCCAAACTGTTAAAATAGCATAATAATAGC-AATATTGCATTTTTACCTTTTAATGGCATAAAA
1 ATCCAAACTGTTAAAATAGAACAATAATAGCAAAT-TTGCATTTTTGCCTTTTAACGACACAAAA
* * ** * * * *
18100313 AGTCTTAAATAGATC-TCATTGATAACTTTTTCACTCATTTCAACTATGAAAACCAAGTTCAATC
65 AGTCTTAAACAGA-CATAAACGACAACTTTTTCACACATATCAACTATGGAAACCAAGTTCAATC
** *
18100377 ATTTGGACATGTTTAATATC----A-T---G-T
129 ATTCAGACAAGTTTAATATCATGTATTGAAGCT
* * * * *
18100401 ATCCAAACTGTTAAAACATAACAGTAACAGCAAATTTGCATTTTTGCCTTTTAACAACA-AAAAA
1 ATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGCATTTTTGCCTTTTAACGACACAAAAA
* ** * * *
18100465 ATCTTAAACTA-AGGTAAACGACAACTTTTTTCACACATATCAATTGTGAAAACCAAGTTCAATC
66 GTCTTAAAC-AGACATAAACGACAAC-TTTTTCACACATATCAACTATGGAAACCAAGTTCAATC
* * * * *
18100529 ATTTAAATAAGTTTAATATCATGTTTTGAAGTT
129 ATTCAGACAAGTTTAATATCATGTATTGAAGCT
* * *
18100562 ATCCAAACTGTT-AAA-AG--CATATAATAGCAATTTTGCATTTTTGCATTTTAACTG-TACAAA
1 ATCCAAACTGTTAAAATAGAACA-ATAATAGCAAATTTGCATTTTTGCCTTTTAAC-GACACAAA
* ** * * *
18100622 AAGTCTTAAATAGATGTAAACGATAACTTTTTCATACATATCAACTATGGAAACTAAGTTCAATC
64 AAGTCTTAAACAGACATAAACGACAACTTTTTCACACATATCAACTATGGAAACCAAGTTCAATC
* *
18100687 ATTCAGACAACTTTAATATCATGTATTGAAACT
129 ATTCAGACAAGTTTAATATCATGTATTGAAGCT
* * * * * ** *
18100720 ATCAAAATTGTTAAAACAGAAC---AATAGCAAAATTACATTTTTGCCTTTTAACGGTATAAAAA
1 ATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGCATTTTTGCCTTTTAACGACACAAAAA
* * * * * **
18100782 GTCCTAAACAGATATAAACAACAACTTTTTCATACATATCAA-T-TGTAAAAATAAGTTCAATCA
66 GTCTTAAACAGACATAAACGACAACTTTTTCACACATATCAACTATG-GAAACCAAGTTCAATCA
18100845 TTCAGACAAGTTTAATATCATGTATTGAAGCT
130 TTCAGACAAGTTTAATATCATGTATTGAAGCT
* * * * * * * * *
18100877 ATCTAAACTATTAAAATAGCATAATAACAAC-AATTTCACAATTTTGCCTTTTAACAACACAAAA
1 ATCCAAACTGTTAAAATAGAACAATAATAGCAAATTT-GCATTTTTGCCTTTTAACGACACAAAA
* ** ** * * *
18100941 AGTCTTAAACATACATAAACGGTAGTTTTTTCATACATATCAATTGTGGAAACCAAGTTCAATCA
65 AGTCTTAAACAGACATAAACGACAACTTTTTCACACATATCAACTATGGAAACCAAGTTCAATCA
* *
18101006 TTCAAACAAGTTTAATATCATGTGTTGAAGCT
130 TTCAGACAAGTTTAATATCATGTATTGAAGCT
* * * ***
18101038 ATCCAAATTGTTAAAATAGAACAATAATAGCAAATTTGCATTTTTGCCTTTTAATGGCATGCAAA
1 ATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGCATTTTTGCCTTTTAACGACACAAAAA
* * * * * *
18101103 GTCCTAAACAGACATAAACAATAATTTTTTCACACATATCAATTATGGAAACCAAGTTCAATTAT
66 GTCTTAAACAGACATAAACGACAACTTTTTCACACATATCAACTATGGAAACCAAGTTCAATCAT
* * *
18101168 TTAGACAAGTTTAATATCATGTTTTGAAACT
131 TCAGACAAGTTTAATATCATGTATTGAAGCT
* * * * *
18101199 ATCAAAACTGTTAAAATAAAATAATAATTGCAAATTTGCATTTTTGCCTTTTAACGGCACAAAAA
1 ATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGCATTTTTGCCTTTTAACGACACAAAAA
* * * * *
18101264 GTCTTAAACAAACATAAATGGCAACTTTTTCACACATATCAACAATTGAAACCAAGTTCAATCAT
66 GTCTTAAACAGACATAAACGACAACTTTTTCACACATATCAACTATGGAAACCAAGTTCAATCAT
** * *
18101329 TTGGATACGTTTAATATCAT
131 TCAGACAAGTTTAATATCAT
18101349 AAACTTATTT
Statistics
Matches: 1441, Mismatches: 259, Indels: 93
0.80 0.14 0.05
Matches are distributed among these distances:
151 20 0.01
152 97 0.07
153 4 0.00
156 3 0.00
157 66 0.05
158 169 0.12
159 132 0.09
160 190 0.13
161 493 0.34
162 134 0.09
164 2 0.00
165 118 0.08
166 13 0.01
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.33
Consensus pattern (161 bp):
ATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGCATTTTTGCCTTTTAACGACACAAAAA
GTCTTAAACAGACATAAACGACAACTTTTTCACACATATCAACTATGGAAACCAAGTTCAATCAT
TCAGACAAGTTTAATATCATGTATTGAAGCT
Found at i:18101251 original size:798 final size:804
Alignment explanation
Indices: 18099442--18101348 Score: 2297
Period size: 798 Copynumber: 2.4 Consensus size: 804
18099432 ATTTAATATC
* * * * *
18099442 ATCCAAACTATTAAAATAGAACAATAATAGCAAATTTACGTTTTTGCCTTTTAACGACA-AAAAA
1 ATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGCATTTTTGCCTTTTAATGGCATAAAAA
* * * ** * *
18099506 ATATTAAACA-AAAGTAAATAGCAACTTTTTCACATATATCAACTATGGAAACCAAGTTCAACCA
66 GTCTTAAACAGACA-TAAATAATAACTTTTTCACACATATCAACTATGGAAACCAAGTTCAATCA
* * *
18099570 -TTCGAACAAGTTTAATATAATGTATTGAAGCTATCCAAATTGTTAAAATAGAAAATAATAAT--
130 TTTAG-ACAAGTTTAATATCATGT-TTGAA-CTATCCAAACTGTTAAAAT--AAAATAATAATGC
* *
18099632 AAATTTGCATTTTTGCCTTTTAACGACACAAAAAATCTTAAACAAAGGTAAACAATAACTTTTTC
190 AAATTTGCATTTTTGCCTTTTAACGACACAAAAAATCTTAAACAAAGGTAAACGACAACTTTTTC
* * * *
18099697 ACACATAT-AATTGTGGAAACTAAGTTCAATCATTCAGACAAGTTTAATATCGTGTATTGAAGCT
255 ACACATATCAATTGT-GAAACCAAGTTCAATCATTTAGATAAGTTTAATATCATGTATTGAAGCT
* *
18099761 ATCCAAACTGTTAAAATAGCATAATAATAGTAATTTTACATTTTTACCTTTTAATGGCACAAAAA
319 ATCCAAACTGTTAAAATAGCATAATAATAGCAATTTTACATTTTTACATTTTAATGGCACAAAAA
* *
18099826 GTTTTAAACAGACATAAACGATAACTTTTTCACACATTTCAACTATGGAAACCAAGTTCAAACAT
384 GTCTTAAACAGACATAAACGATAACTTTTTCACACATATCAACTATGGAAACCAAGTTCAAACAT
* * *
18099891 TCAGACAACTTTAATATTATGTATTGAAGGCATCCAAATTGTTAAAACAGAACAATAACAGTAAA
449 TCAGACAACTTTAATATCATGTATTGAAGACATCAAAATTGTTAAAACAGAACAATAACAG-AAA
* * *
18099956 TTTCCATTTTCACCTTTTAATGACACAAAAAAAAAATCTTAAACAAAGGTAAACAACAACTTTTT
513 TTTACATTTTCACCTTTTAA-GACACAAAAAAAAAATCCTAAACAAAGATAAACAACAACTTTTT
* * * * * *
18100021 CACGCATATCAATTGTGGAAACCAAGTTCAATCATTCGGATAAGTTTAATATCATGTGTTGAAGC
577 CACACATATCAATTGTGAAAAACAAGTTCAATCATTCAGACAAGTTTAATATCATGTATTGAAGC
* * * * *
18100086 TATCCAAACTATTAAAAGAGAACAATAATAGCAATTTTACATTTTTGGCCTTTTAACGACACAAA
642 TATCCAAACTATTAAAAGAGAACAATAACAACAATTTCACAATTTTGGCCTTTTAACAACACAAA
* ** * ** *
18100151 AAATTTTAAACAGAGGTAAATAGCAACTTTTTCACACATATCAACTATGGAAACCAAGTTTGATT
707 AAATCTTAAACAGACATAAACAGCAACTTTTTCACACATATCAACTATGGAAACCAAGTTCAATC
*
18100216 ATTCAGACAAATTTAATATCATGTGTTGAAGCT
772 ATTCAAACAAATTTAATATCATGTGTTGAAGCT
* * *
18100249 ATCCAAACTGTTAAAATAGCATAATAATAGC-AATATTGCATTTTTACCTTTTAATGGCATAAAA
1 ATCCAAACTGTTAAAATAGAACAATAATAGCAAAT-TTGCATTTTTGCCTTTTAATGGCATAAAA
* * * * * * *
18100313 AGTCTTAAATAGATC-TCATTGATAACTTTTTCACTCATTTCAACTATGAAAACCAAGTTCAATC
65 AGTCTTAAACAGA-CATAAATAATAACTTTTTCACACATATCAACTATGGAAACCAAGTTCAATC
* * * * * * *
18100377 ATTTGGACATGTTTAATATCA----TG---TATCCAAACTGTTAAAACATAACAGTAACAGCAAA
129 ATTTAGACAAGTTTAATATCATGTTTGAACTATCCAAACTGTTAAAATAAAATAATAA-TGCAAA
* *
18100435 TTTGCATTTTTGCCTTTTAACAACA-AAAAAATCTTAAACTAAGGTAAACGACAACTTTTTTCAC
193 TTTGCATTTTTGCCTTTTAACGACACAAAAAATCTTAAACAAAGGTAAACGACAAC-TTTTTCAC
* * *
18100499 ACATATCAATTGTGAAAACCAAGTTCAATCATTTAAATAAGTTTAATATCATGTTTTGAAGTTAT
257 ACATATCAATTGTG-AAACCAAGTTCAATCATTTAGATAAGTTTAATATCATGTATTGAAGCTAT
* * *
18100564 CCAAACTGTT-AAA-AGCAT-ATAATAGCAATTTTGCATTTTTGCATTTTAACT-GTACAAAAAG
321 CCAAACTGTTAAAATAGCATAATAATAGCAATTTTACATTTTTACATTTTAA-TGGCACAAAAAG
* ** * * *
18100625 TCTTAAATAGATGTAAACGATAACTTTTTCATACATATCAACTATGGAAACTAAGTTCAATCATT
385 TCTTAAACAGACATAAACGATAACTTTTTCACACATATCAACTATGGAAACCAAGTTCAAACATT
*
18100690 CAGACAACTTTAATATCATGTATTGAA-ACTATCAAAATTGTTAAAACAGAACAATAGCA-AAA-
450 CAGACAACTTTAATATCATGTATTGAAGAC-ATCAAAATTGTTAAAACAGAACAATAACAGAAAT
** *** * * * *
18100752 TTACATTTTTGCCTTTT-A-AC-GGTATAAAAAGTCCTAAACAGATATAAACAACAACTTTTTCA
514 TTACATTTTCACCTTTTAAGACACAAAAAAAAAATCCTAAACAAAGATAAACAACAACTTTTTCA
* *
18100814 TACATATCAATTGT-AAAAATAAGTTCAATCATTCAGACAAGTTTAATATCATGTATTGAAGCTA
579 CACATATCAATTGTGAAAAACAAGTTCAATCATTCAGACAAGTTTAATATCATGTATTGAAGCTA
* * * *
18100878 TCTAAACTATTAAAATAGCATAATAACAACAATTTCACAATTTT-GCCTTTTAACAACACAAAAA
644 TCCAAACTATTAAAAGAGAACAATAACAACAATTTCACAATTTTGGCCTTTTAACAACACAAAAA
* * * * ** * * *
18100942 GTCTTAAACATACATAAACGGTAGTTTTTTCATACATATCAATTGTGGAAACCAAGTTCAATCAT
709 ATCTTAAACAGACATAAACAGCAACTTTTTCACACATATCAACTATGGAAACCAAGTTCAATCAT
*
18101007 TCAAACAAGTTTAATATCATGTGTTGAAGCT
774 TCAAACAAATTTAATATCATGTGTTGAAGCT
* **
18101038 ATCCAAATTGTTAAAATAGAACAATAATAGCAAATTTGCATTTTTGCCTTTTAATGGCATGCAAA
1 ATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGCATTTTTGCCTTTTAATGGCATAAAAA
* * * * *
18101103 GTCCTAAACAGACATAAACAATAATTTTTTCACACATATCAATTATGGAAACCAAGTTCAATTAT
66 GTCTTAAACAGACATAAATAATAACTTTTTCACACATATCAACTATGGAAACCAAGTTCAATCAT
*
18101168 TTAGACAAGTTTAATATCATGTTTTGAAACTATCAAAACTGTTAAAATAAAATAATAATTGCAAA
131 TTAGACAAGTTTAATATCATG-TTTG-AACTATCCAAACTGTTAAAATAAAATAATAA-TGCAAA
* * ** * *
18101233 TTTGCATTTTTGCCTTTTAACGGCACAAAAAGTCTTAAACAAACATAAATGGCAACTTTTTCACA
193 TTTGCATTTTTGCCTTTTAACGACACAAAAAATCTTAAACAAAGGTAAACGACAACTTTTTCACA
* * *
18101298 CATATCAACAAT-TGAAACCAAGTTCAATCATTTGGATACGTTTAATATCAT
258 CATATC-A-ATTGTGAAACCAAGTTCAATCATTTAGATAAGTTTAATATCAT
18101349 AAACTTATTT
Statistics
Matches: 928, Mismatches: 145, Indels: 63
0.82 0.13 0.06
Matches are distributed among these distances:
788 1 0.00
789 220 0.24
790 83 0.09
791 45 0.05
792 2 0.00
794 3 0.00
795 14 0.02
796 3 0.00
797 8 0.01
798 246 0.27
799 76 0.08
800 47 0.05
801 59 0.06
803 2 0.00
806 3 0.00
807 47 0.05
808 65 0.07
809 4 0.00
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.33
Consensus pattern (804 bp):
ATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGCATTTTTGCCTTTTAATGGCATAAAAA
GTCTTAAACAGACATAAATAATAACTTTTTCACACATATCAACTATGGAAACCAAGTTCAATCAT
TTAGACAAGTTTAATATCATGTTTGAACTATCCAAACTGTTAAAATAAAATAATAATGCAAATTT
GCATTTTTGCCTTTTAACGACACAAAAAATCTTAAACAAAGGTAAACGACAACTTTTTCACACAT
ATCAATTGTGAAACCAAGTTCAATCATTTAGATAAGTTTAATATCATGTATTGAAGCTATCCAAA
CTGTTAAAATAGCATAATAATAGCAATTTTACATTTTTACATTTTAATGGCACAAAAAGTCTTAA
ACAGACATAAACGATAACTTTTTCACACATATCAACTATGGAAACCAAGTTCAAACATTCAGACA
ACTTTAATATCATGTATTGAAGACATCAAAATTGTTAAAACAGAACAATAACAGAAATTTACATT
TTCACCTTTTAAGACACAAAAAAAAAATCCTAAACAAAGATAAACAACAACTTTTTCACACATAT
CAATTGTGAAAAACAAGTTCAATCATTCAGACAAGTTTAATATCATGTATTGAAGCTATCCAAAC
TATTAAAAGAGAACAATAACAACAATTTCACAATTTTGGCCTTTTAACAACACAAAAAATCTTAA
ACAGACATAAACAGCAACTTTTTCACACATATCAACTATGGAAACCAAGTTCAATCATTCAAACA
AATTTAATATCATGTGTTGAAGCT
Found at i:18106257 original size:37 final size:37
Alignment explanation
Indices: 18106207--18106277 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
18106197 ATTTAAATCA
18106207 AATATTCATACATCTAGAAACCTACAGTGTAACAGAG
1 AATATTCATACATCTAGAAACCTACAGTGTAACAGAG
18106244 AATATTCATACATCTAGAAACCTACAGTGTAACA
1 AATATTCATACATCTAGAAACCTACAGTGTAACA
18106278 AAGGAAGATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.44, C:0.20, G:0.11, T:0.25
Consensus pattern (37 bp):
AATATTCATACATCTAGAAACCTACAGTGTAACAGAG
Found at i:18106878 original size:34 final size:34
Alignment explanation
Indices: 18106828--18106897 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 34
18106818 GTAGAAACAT
* *
18106828 AACAAATCATACAAGAAGTTTAGGGATTTGACCC
1 AACAAATCAGACAAGAAGTTTAGGGATTTAACCC
*
18106862 AACAAATCAGATAAGAAGTTTAGGGATTTAACCC
1 AACAAATCAGACAAGAAGTTTAGGGATTTAACCC
18106896 AA
1 AA
18106898 AATGAAAGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.44, C:0.16, G:0.17, T:0.23
Consensus pattern (34 bp):
AACAAATCAGACAAGAAGTTTAGGGATTTAACCC
Found at i:18107512 original size:63 final size:63
Alignment explanation
Indices: 18107433--18107563 Score: 151
Period size: 63 Copynumber: 2.1 Consensus size: 63
18107423 GCACCTTGAG
** *
18107433 TAAT-CCCTTTCAA-TTTTTATGAGGGTATTATTCAAAGTGTTTTTGGCC-AAAAATGCCTTAAA
1 TAATCCCCTTTCAATTTTTTATGA-GG-ATTATTCAAAGCATTTTTGGCCAAAAAATGCCTCAAA
* * * * *
18107495 TAATCCCCTTTCCATTTTTTTTTAGGATTATTCAAGGCATTTTTGGCCAAAAAATGCCTCGAA
1 TAATCCCCTTTCAATTTTTTATGAGGATTATTCAAAGCATTTTTGGCCAAAAAATGCCTCAAA
18107558 TAATCC
1 TAATCC
18107564 TTTACAAAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
62 23 0.40
63 28 0.48
64 7 0.12
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (63 bp):
TAATCCCCTTTCAATTTTTTATGAGGATTATTCAAAGCATTTTTGGCCAAAAAATGCCTCAAA
Found at i:18107704 original size:63 final size:61
Alignment explanation
Indices: 18107644--18107853 Score: 151
Period size: 63 Copynumber: 3.4 Consensus size: 61
18107634 TTTTTTTTAA
* *
18107644 GGCAAAAAATGCCTTGAATAATCCTTTACAAAAAATTGAATAGGTTATTCAAGGCATTTTTTT
1 GGCAAAAAATGCCTTGAATAATCCTTTACAAAAAATTAAATAGGTTATTAAAGGCA--TTTTT
* * * * **** ** *
18107707 TGCCAAATATGGCTTGAATAATCCCTTT--AATTTTTTTTA-AGGATTATTAAAGGTATTTTT
1 GGCAAAAAATGCCTTGAATAAT-CCTTTACAAAAAATTAAATAGG-TTATTAAAGGCATTTTT
* * * * *
18107767 GGCTAGAAAATGCCTTGAATAATCCCTTACAAAAAATTAAATAGGGTTATTTAAGGCCTTTCT
1 GGC-AAAAAATGCCTTGAATAATCCTTTACAAAAAATTAAATA-GGTTATTAAAGGCATTTTT
18107830 GGCCAAAAACAT--CTTGAATAATCC
1 GG-CAAAAA-ATGCCTTGAATAATCC
18107854 CCTTCAATTT
Statistics
Matches: 109, Mismatches: 29, Indels: 19
0.69 0.18 0.12
Matches are distributed among these distances:
60 11 0.10
61 18 0.17
62 32 0.29
63 38 0.35
64 10 0.09
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (61 bp):
GGCAAAAAATGCCTTGAATAATCCTTTACAAAAAATTAAATAGGTTATTAAAGGCATTTTT
Found at i:18107713 original size:104 final size:103
Alignment explanation
Indices: 18107542--18107748 Score: 378
Period size: 104 Copynumber: 2.0 Consensus size: 103
18107532 CATTTTTGGC
18107542 CAAAAAATGCCTCGAATAATCCTTTACAAAAAATTGAATAGGTTATTCAAGGCATTTTTTTTACC
1 CAAAAAATGCCTCGAATAATCCTTTACAAAAAATTGAATAGGTTATTCAAGGCATTTTTTTTACC
18107607 AAATAGGGCTTGAATAATCCCCTTTAATTTTTTTTAAGG
66 AAATAGGGCTTGAATAAT-CCCTTTAATTTTTTTTAAGG
* *
18107646 CAAAAAATGCCTTGAATAATCCTTTACAAAAAATTGAATAGGTTATTCAAGGCATTTTTTTTGCC
1 CAAAAAATGCCTCGAATAATCCTTTACAAAAAATTGAATAGGTTATTCAAGGCATTTTTTTTACC
*
18107711 AAATATGGCTTGAATAATCCCTTTAATTTTTTTTAAGG
66 AAATAGGGCTTGAATAATCCCTTTAATTTTTTTTAAGG
18107749 ATTATTAAAG
Statistics
Matches: 100, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
103 20 0.20
104 80 0.80
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (103 bp):
CAAAAAATGCCTCGAATAATCCTTTACAAAAAATTGAATAGGTTATTCAAGGCATTTTTTTTACC
AAATAGGGCTTGAATAATCCCTTTAATTTTTTTTAAGG
Found at i:18107960 original size:110 final size:109
Alignment explanation
Indices: 18107773--18107979 Score: 317
Period size: 110 Copynumber: 1.9 Consensus size: 109
18107763 TTTTGGCTAG
*
18107773 AAAATGCCTTGAATAATCCCTTACAAAAAATTAAATAGGGTTATTTAAGGCCTTTCTGGCCAAAA
1 AAAATACCTTGAATAATCCCTTACAAAAAATTAAATAGGGTTATTTAAGGCCTTTCTGGCCAAAA
* *
18107838 ACATCTTGAATAATCCCCTTC-AATTTTTTTGGCATTTTTGTCAA
66 ACACCTTAAATAAT-CCCTTCTAATTTTTTTGGCATTTTTGTCAA
* * * * *
18107882 AAAATACCTTGAATAATCCCTTACAAAAAAATTGAGTGGGGTTATTTAAGGCGTTTTTGGCCAAA
1 AAAATACCTTGAATAATCCCTTAC-AAAAAATTAAATAGGGTTATTTAAGGCCTTTCTGGCCAAA
18107947 AACACCTTAAATAATCCCTTCTAATTTTTTTGG
65 AACACCTTAAATAATCCCTTCTAATTTTTTTGG
18107980 GGACTACTCA
Statistics
Matches: 88, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
109 29 0.33
110 59 0.67
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.35
Consensus pattern (109 bp):
AAAATACCTTGAATAATCCCTTACAAAAAATTAAATAGGGTTATTTAAGGCCTTTCTGGCCAAAA
ACACCTTAAATAATCCCTTCTAATTTTTTTGGCATTTTTGTCAA
Found at i:18113901 original size:17 final size:16
Alignment explanation
Indices: 18113855--18113900 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 16
18113845 ATTCCAAAAC
18113855 TTTTATTAATTTTTATT
1 TTTTATT-ATTTTTATT
*
18113872 TTTTAGTTA-TTTTGTT
1 TTTTA-TTATTTTTATT
18113888 TTTTATTATTTTT
1 TTTTATTATTTTT
18113901 TTAAATTGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
15 3 0.12
16 15 0.58
17 6 0.23
18 2 0.08
ACGTcount: A:0.17, C:0.00, G:0.04, T:0.78
Consensus pattern (16 bp):
TTTTATTATTTTTATT
Found at i:18115056 original size:19 final size:18
Alignment explanation
Indices: 18115025--18115060 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
18115015 TTATCTTAAC
*
18115025 AAAAAAGATAAATCAAAT
1 AAAAAAGAAAAATCAAAT
18115043 AAAAAATGAAAAATCAAA
1 AAAAAA-GAAAAATCAAA
18115061 GATAAACAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.75, C:0.06, G:0.06, T:0.14
Consensus pattern (18 bp):
AAAAAAGAAAAATCAAAT
Found at i:18115458 original size:42 final size:40
Alignment explanation
Indices: 18115406--18115507 Score: 143
Period size: 40 Copynumber: 2.5 Consensus size: 40
18115396 CTAAATAACT
*
18115406 TTTGAAAAATAAATAAAGCTCC-TTAATTAGAGGCTCAACAAC
1 TTTGAAAAATAAATAAAGCTCCTTTAATCAGAGGCT---CAAC
*
18115448 TTTGAAAAATAAATAAAACTCCTTTAATCAGAGGCTCAAC
1 TTTGAAAAATAAATAAAGCTCCTTTAATCAGAGGCTCAAC
*
18115488 TTTGGAAAATAAATAAAGCT
1 TTTGAAAAATAAATAAAGCT
18115508 TAACAACTTT
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
40 22 0.40
42 21 0.38
43 12 0.22
ACGTcount: A:0.46, C:0.15, G:0.12, T:0.27
Consensus pattern (40 bp):
TTTGAAAAATAAATAAAGCTCCTTTAATCAGAGGCTCAAC
Found at i:18115499 original size:40 final size:40
Alignment explanation
Indices: 18115406--18115504 Score: 137
Period size: 42 Copynumber: 2.4 Consensus size: 40
18115396 CTAAATAACT
* *
18115406 TTTGAAAAATAAATAAAGCTCCTTAATTAGAGGCTCAACAAC
1 TTTGAAAAATAAATAAAACTCCTTAATCAGAGGCT--ACAAC
18115448 TTTGAAAAATAAATAAAACTCCTTTAATCAGAGGCT-CAAC
1 TTTGAAAAATAAATAAAACTCC-TTAATCAGAGGCTACAAC
*
18115488 TTTGGAAAATAAATAAA
1 TTTGAAAAATAAATAAA
18115505 GCTTAACAAC
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
40 20 0.38
42 21 0.40
43 12 0.23
ACGTcount: A:0.47, C:0.14, G:0.11, T:0.27
Consensus pattern (40 bp):
TTTGAAAAATAAATAAAACTCCTTAATCAGAGGCTACAAC
Found at i:18115568 original size:110 final size:110
Alignment explanation
Indices: 18115406--18115620 Score: 315
Period size: 110 Copynumber: 1.9 Consensus size: 110
18115396 CTAAATAACT
* *
18115406 TTTGAAAAATAAATAAAGCTCCTTAATTAGAGGCTCAACAACTTTGAAAAATAAATAAAACTCCT
1 TTTGAAAAATAAATAAAGCTCCTTAATCAGAGGCTCAAAAACTTTGAAAAATAAATAAAACTCCT
* * *
18115471 TTAATCAGAGGCT-CAACTTTGGAAAATAAATAAAGCTTAACAAC
66 CTAATCAGAGGCTACAACTTTGAAAAACAAATAAAGCTTAACAAC
* * * *
18115515 TTTGGAAAATAAATAAAGCTCCTCTAATCAGAGGTTCAAAAACTTTGGAAAATAAATAAAGCTCC
1 TTTGAAAAATAAATAAAGCTCCT-TAATCAGAGGCTCAAAAACTTTGAAAAATAAATAAAACTCC
18115580 TCTAATCAGAGGCTCAACAACTTTGAAAAACAAATAAAGCT
65 TCTAATCAGAGGCT--ACAACTTTGAAAAACAAATAAAGCT
18115621 CCTCTAATAA
Statistics
Matches: 93, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
109 22 0.24
110 49 0.53
113 22 0.24
ACGTcount: A:0.46, C:0.16, G:0.12, T:0.26
Consensus pattern (110 bp):
TTTGAAAAATAAATAAAGCTCCTTAATCAGAGGCTCAAAAACTTTGAAAAATAAATAAAACTCCT
CTAATCAGAGGCTACAACTTTGAAAAACAAATAAAGCTTAACAAC
Found at i:18115573 original size:43 final size:43
Alignment explanation
Indices: 18115509--18115706 Score: 272
Period size: 43 Copynumber: 4.6 Consensus size: 43
18115499 AATAAAGCTT
* *
18115509 AACAACTTTGGAAAATAAATAAAGCTCCTCTAATCAGAGGTTC
1 AACAACTTTGGAAAATAAATAAAGCTCCTCTAATCAAAGGCTC
* *
18115552 AAAAACTTTGGAAAATAAATAAAGCTCCTCTAATCAGAGGCTC
1 AACAACTTTGGAAAATAAATAAAGCTCCTCTAATCAAAGGCTC
* * *
18115595 AACAACTTTGAAAAACAAATAAAGCTCCTCTAATAAAAGGCTC
1 AACAACTTTGGAAAATAAATAAAGCTCCTCTAATCAAAGGCTC
* * * *
18115638 AACAACTTTAGAAAATAAATAAAGCT-ATTTAATCAAAGGCTT
1 AACAACTTTGGAAAATAAATAAAGCTCCTCTAATCAAAGGCTC
* *
18115680 AACAACTTTGAAAAATAAATAAGGCTC
1 AACAACTTTGGAAAATAAATAAAGCTC
18115707 AATGACAATC
Statistics
Matches: 137, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
42 35 0.26
43 102 0.74
ACGTcount: A:0.47, C:0.17, G:0.12, T:0.24
Consensus pattern (43 bp):
AACAACTTTGGAAAATAAATAAAGCTCCTCTAATCAAAGGCTC
Found at i:18127631 original size:17 final size:17
Alignment explanation
Indices: 18127611--18127659 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
18127601 TAATTCCAAA
18127611 TTTTTATTAATTTTTAT
1 TTTTTATTAATTTTTAT
*
18127628 TTTTTATTAA-TTTTGT
1 TTTTTATTAATTTTTAT
* *
18127644 TTTTTGTTATTTTTTA
1 TTTTTATTAATTTTTA
18127660 AATTAAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
16 13 0.48
17 14 0.52
ACGTcount: A:0.18, C:0.00, G:0.04, T:0.78
Consensus pattern (17 bp):
TTTTTATTAATTTTTAT
Found at i:18127656 original size:15 final size:16
Alignment explanation
Indices: 18127611--18127648 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
18127601 TAATTCCAAA
18127611 TTTTTATTAATTTTTAT
1 TTTTTATTAA-TTTTAT
*
18127628 TTTTTATTAATTTTGT
1 TTTTTATTAATTTTAT
18127644 TTTTT
1 TTTTT
18127649 GTTATTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (16 bp):
TTTTTATTAATTTTAT
Found at i:18127858 original size:16 final size:17
Alignment explanation
Indices: 18127827--18127859 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
18127817 CTCAAAAAAG
*
18127827 ATATTTTATTTTGTTTT
1 ATATTTTATATTGTTTT
18127844 ATATTTT-TATTGTTTT
1 ATATTTTATATTGTTTT
18127860 CTAAATTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.18, C:0.00, G:0.06, T:0.76
Consensus pattern (17 bp):
ATATTTTATATTGTTTT
Found at i:18127898 original size:4 final size:4
Alignment explanation
Indices: 18127889--18127940 Score: 65
Period size: 4 Copynumber: 13.5 Consensus size: 4
18127879 AAAACTTGTA
*
18127889 AAAT AAAT AAAT AACT AAAT AAAT AAAT AAAT AGAAT -AA- AAAT AAA-
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A-AAT AAAT AAAT AAAT
18127935 AAAT AA
1 AAAT AA
18127941 CAAAAATCGG
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
3 7 0.17
4 32 0.76
5 3 0.07
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:18127947 original size:16 final size:17
Alignment explanation
Indices: 18127888--18127947 Score: 59
Period size: 20 Copynumber: 3.3 Consensus size: 17
18127878 AAAAACTTGT
18127888 AAAATAAATAAATAACTAA
1 AAAATAAATAAATAAC--A
*
18127907 ATAAATAAATAAATAGAATA
1 A-AAATAAATAAAT--AACA
18127927 AAAATAAA-AAATAACA
1 AAAATAAATAAATAACA
18127943 AAAAT
1 AAAAT
18127948 CGGCTCAACT
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
16 8 0.22
18 4 0.11
19 8 0.22
20 14 0.39
22 2 0.06
ACGTcount: A:0.75, C:0.03, G:0.02, T:0.20
Consensus pattern (17 bp):
AAAATAAATAAATAACA
Found at i:18129381 original size:105 final size:104
Alignment explanation
Indices: 18129144--18129441 Score: 358
Period size: 105 Copynumber: 2.9 Consensus size: 104
18129134 TATTTTTTTG
* *
18129144 ATAA-AATAAAAATTTTCAATCCAACCAAACTATT-GAAGGATTTAAATCTTAAATTAAGTCTTA
1 ATAATAAT-AAAATTTTCAATCCTACCAAACTATTAG-AGGATTTAAATCTTGAATTAAGTCTTA
* * * * *
18129207 TCTAAATTATTGGATGACATAAT-AA--ACTTTTTAAAAATA
64 -CCAAATTATTGGAAGACTTAATGAATTTCTTTTTAAAAAAA
* * *
18129246 ATAATAATAAAATTTTTAATCTTACCAAACTATTAGAGGATTTAAATCTTGAATTAAGTATTACC
1 ATAATAATAAAATTTTCAATCCTACCAAACTATTAGAGGATTTAAATCTTGAATTAAGTCTTACC
18129311 AAATTATTGGAAGACTTAATGAATTTCTTTTGTAAAAAAA
66 AAATTATTGGAAGACTTAATGAATTTCTTTT-TAAAAAAA
* * *
18129351 ATAATAATAAAATTTTCAATCCTACCAAACTATTAAAAGATTTAAATATTGAATT-AGATCTTAC
1 ATAATAATAAAATTTTCAATCCTACCAAACTATTAGAGGATTTAAATCTTGAATTAAG-TCTTAC
* *
18129415 CAAACTATTGGAA-AGTTTAATGAATTT
65 CAAATTATTGGAAGA-CTTAATGAATTT
18129442 TCTTAATATA
Statistics
Matches: 170, Mismatches: 18, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
101 19 0.11
102 54 0.32
103 4 0.02
104 8 0.05
105 85 0.50
ACGTcount: A:0.45, C:0.10, G:0.08, T:0.37
Consensus pattern (104 bp):
ATAATAATAAAATTTTCAATCCTACCAAACTATTAGAGGATTTAAATCTTGAATTAAGTCTTACC
AAATTATTGGAAGACTTAATGAATTTCTTTTTAAAAAAA
Found at i:18133027 original size:17 final size:18
Alignment explanation
Indices: 18133005--18133038 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
18132995 GAGGTGGAGC
18133005 AAAGAG-GAGAAAAAAGA
1 AAAGAGAGAGAAAAAAGA
18133022 AAAGAGAGAGAAAAAAG
1 AAAGAGAGAGAAAAAAG
18133039 GTAAGGAGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (18 bp):
AAAGAGAGAGAAAAAAGA
Found at i:18135932 original size:20 final size:21
Alignment explanation
Indices: 18135909--18135954 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
18135899 AAAATAAGTG
18135909 TAAAAAATATTGTT-ATAACA
1 TAAAAAATATTGTTGATAACA
* * *
18135929 TAAATAATATTTTTGATAACG
1 TAAAAAATATTGTTGATAACA
18135950 TAAAA
1 TAAAA
18135955 GAATTATTAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.52, C:0.04, G:0.07, T:0.37
Consensus pattern (21 bp):
TAAAAAATATTGTTGATAACA
Found at i:18136661 original size:98 final size:97
Alignment explanation
Indices: 18136523--18136711 Score: 261
Period size: 98 Copynumber: 1.9 Consensus size: 97
18136513 AATATTTAAG
* * * *
18136523 AAATTAGTAACGTAAAAAATTAGTAGTATAAATAAAAAAATAATTTAATTAAAGAATAAGTATTA
1 AAATTAGTAACATAAAAAATTAGCAGTATAAATAAAAAAATAATTCAATTAAAAAATAAGTATTA
*
18136588 ATGTAAAAAAGTAAGAATAATCATAACATAAT
66 ACGTAAAAAAGTAAGAATAATCATAACATAAT
* * * * *
18136620 AAATTGGTAACATAAAAAAATTCGCATTATAAATTAAAAAATAATTCAATTAAAAAATAAGTGTT
1 AAATTAGTAACAT-AAAAAATTAGCAGTATAAATAAAAAAATAATTCAATTAAAAAATAAGTATT
* *
18136685 AACGTAAAAAGGTGAGAATAATCATAA
65 AACGTAAAAAAGTAAGAATAATCATAA
18136712 AATTGGTATC
Statistics
Matches: 79, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
97 11 0.14
98 68 0.86
ACGTcount: A:0.57, C:0.05, G:0.10, T:0.28
Consensus pattern (97 bp):
AAATTAGTAACATAAAAAATTAGCAGTATAAATAAAAAAATAATTCAATTAAAAAATAAGTATTA
ACGTAAAAAAGTAAGAATAATCATAACATAAT
Found at i:18137115 original size:21 final size:21
Alignment explanation
Indices: 18137091--18137158 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
18137081 AGGAACAAGT
18137091 ATAAAAAAATATTATTATAAC
1 ATAAAAAAATATTATTATAAC
** * *
18137112 AT-AAGTAATATTTTTGGTAAC
1 ATAAAAAAATATTATT-ATAAC
* *
18137133 ATAAAAGAATTATTATTACAA-
1 ATAAAA-AAATATTATTATAAC
18137154 ATAAA
1 ATAAA
18137159 TAATAATTCT
Statistics
Matches: 34, Mismatches: 10, Indels: 6
0.68 0.20 0.12
Matches are distributed among these distances:
20 10 0.29
21 13 0.38
22 4 0.12
23 7 0.21
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.35
Consensus pattern (21 bp):
ATAAAAAAATATTATTATAAC
Found at i:18137378 original size:19 final size:17
Alignment explanation
Indices: 18137354--18137397 Score: 54
Period size: 16 Copynumber: 2.5 Consensus size: 17
18137344 AGTTGACAAT
*
18137354 ATAAAAAATTATTATTACA
1 ATAAAAAATTAAT-TTA-A
18137373 ATAAAAAA-TAATTTAA
1 ATAAAAAATTAATTTAA
18137389 ATAAAAAAT
1 ATAAAAAAT
18137398 AAGAGTTAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 9 0.39
17 3 0.13
18 3 0.13
19 8 0.35
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (17 bp):
ATAAAAAATTAATTTAA
Found at i:18137487 original size:216 final size:213
Alignment explanation
Indices: 18137047--18137883 Score: 641
Period size: 213 Copynumber: 3.9 Consensus size: 213
18137037 ACACCTTAAT
* * ** * *
18137047 AAAAAGTTGTGATAATTTTAAACT-TAAT-AAAAGTAGGAACAAGTATAAAAAAATATTATTATA
1 AAAAAATTGTAATAATTTTAAA-TATAATGAAAAGTAATAACAAGTGTAAAAAGATATTATTATA
* * ** ** * * *
18137110 ACATAAGTAATATTTTTGGTAACATAAAAGAATTATTATTACAAATAAATAATAATTCTAAACCA
65 ACGTAAATAATA-AATTGACAATATAAAA-AATTATTATTAC-AATAAAAAATAATTCTAAA-TA
* ** *
18137175 AAAAATACGTGTTAATATAAAAAAGATGAGGGTAATCATAAAATTGATATCATTTAACGTAAAAT
126 AAAAATAAGTGTTAA-AT-AAAAAGATGAGAATAATCATAAAATTGATATAATTTAACGTAAAAT
* * * *
18137240 AATTAGAAGTATCATAACATCTTTA-A
189 AGTTAGAAATATC-TTACAAC-TTACA
* * *
18137266 AAAAAATT-T-ATGATTCTCCTAAATATAATGAAAGGCAATAACAAGTGTAAAAAGATATTATTA
1 AAAAAATTGTAATAATT-T--TAAATATAATGAAAAGTAATAACAAGTGTAAAAAGATATTATTA
*
18137329 TAACGTAAATAATTAAGTTGACAATATAAAAAATTATTATTACAATAAAAAATAATT-TAAATAA
63 TAACGTAAATAA-TAAATTGACAATATAAAAAATTATTATTACAATAAAAAATAATTCTAAATAA
* * * * *
18137393 AAAATAAGAGTTAACATAAAATA-ATGAGAATAATCATAAAATTAATATTATTTTATGTAAAATA
127 AAAATAAGTGTTAA-ATAAAA-AGATGAGAATAATCATAAAATTGATATAATTTAACGTAAAATA
*
18137457 GTTAGAAATATCTTACACCTTAACA
190 GTTAGAAATATCTTACAACTT-ACA
** * * * *
18137482 AAAAAATTGTAATAATTTTAAACGTAATGAAAAATAACAACAAATGTAAAAATATATTATTGA-A
1 AAAAAATTGTAATAATTTTAAATATAATGAAAAGTAATAACAAGTGTAAAAAGATATTATT-ATA
** *** * * * *
18137546 A--TAGTGTAATAAATTTTTAATGTAAAAAATTACTATTATAA-ATAAAAATAATTCTAAAT-AG
65 ACGTA-AATAATAAATTGACAATATAAAAAATTATTATTACAATA-AAAAATAATTCTAAATAAA
*
18137607 AAA-AAGTGTTAAAGTAAAAATG-TGAGAATAATCATAAAATTGATATAATTTGACGTAAAATAT
128 AAATAAGTGTTAAA-TAAAAA-GATGAGAATAATCATAAAATTGATATAATTTAACGTAAAATA-
* * * *
18137670 GTTTGACATGTCGTA-ATACTTACGA
190 GTTAGAAATATCTTACA-ACTTAC-A
* * * * * * * *
18137695 AAAATATTGTGACAATTTTGAATATAAT-AAAATGTAATAAACAAGCGT-AATAGATTTTATTGT
1 AAAAAATTGTAATAATTTTAAATATAATGAAAA-GTAAT-AACAAGTGTAAAAAGATATTATTAT
* *
18137758 AACGTAAATAATTAAACTGACAATATAAAAAATTATTA-TA-AATAAAAAATAATTCTAAATCTA
64 AACGTAAATAA-TAAATTGACAATATAAAAAATTATTATTACAATAAAAAATAATTCTAAAT-AA
* * * * * ** *
18137821 AAAATAAGTGTTAAGGTAAAAATATAAAAATGATTGTAAAATTGATATAATTTAACATAAAAT
127 AAAATAAGTGTTAA-ATAAAAAGATGAGAATAATCATAAAATTGATATAATTTAACGTAAAAT
18137884 GTGCTAAAAG
Statistics
Matches: 494, Mismatches: 91, Indels: 69
0.76 0.14 0.11
Matches are distributed among these distances:
211 2 0.00
212 57 0.12
213 111 0.22
214 23 0.05
215 69 0.14
216 106 0.21
217 24 0.05
218 11 0.02
219 21 0.04
220 20 0.04
221 48 0.10
222 2 0.00
ACGTcount: A:0.52, C:0.06, G:0.09, T:0.32
Consensus pattern (213 bp):
AAAAAATTGTAATAATTTTAAATATAATGAAAAGTAATAACAAGTGTAAAAAGATATTATTATAA
CGTAAATAATAAATTGACAATATAAAAAATTATTATTACAATAAAAAATAATTCTAAATAAAAAA
TAAGTGTTAAATAAAAAGATGAGAATAATCATAAAATTGATATAATTTAACGTAAAATAGTTAGA
AATATCTTACAACTTACA
Found at i:18137822 original size:19 final size:17
Alignment explanation
Indices: 18137782--18137827 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
18137772 AACTGACAAT
*
18137782 ATAAAAAATTATTATAA
1 ATAAAAAATAATTATAA
*
18137799 ATAAAAAATAATTCTAA
1 ATAAAAAATAATTATAA
*
18137816 ATCTAAAAATAA
1 AT-AAAAAATAA
18137828 GTGTTAAGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 17 0.68
18 8 0.32
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.30
Consensus pattern (17 bp):
ATAAAAAATAATTATAA
Done.