Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 125 of 190
Found at i:19757101 original size:18 final size:18
Alignment explanation
Indices: 19757070--19757140 Score: 72
Period size: 18 Copynumber: 3.9 Consensus size: 18
19757060 AAGGTGTTGG
* *
19757070 TAGGGTTGGAGTA-GGGT
1 TAGGGTAGGGGTAGGGGT
*
19757087 TATGGGTGGGGGTAGGGGT
1 TA-GGGTAGGGGTAGGGGT
* *
19757106 TAGGGTAGAGTTAGGGGT
1 TAGGGTAGGGGTAGGGGT
19757124 TAGGGGTAGGGGTAGGG
1 TA-GGGTAGGGGTAGGG
19757141 ATGGTGTAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
17 2 0.05
18 24 0.55
19 18 0.41
ACGTcount: A:0.17, C:0.00, G:0.58, T:0.25
Consensus pattern (18 bp):
TAGGGTAGGGGTAGGGGT
Found at i:19757104 original size:6 final size:6
Alignment explanation
Indices: 19757080--19757140 Score: 52
Period size: 6 Copynumber: 10.0 Consensus size: 6
19757070 TAGGGTTGGA
* * * * *
19757080 GTAGGG TTATGG GTGGGG GTAGGG GTTA-GG GTAGAG TTAGGG GTTAGGG
1 GTAGGG GTAGGG GTAGGG GTAGGG G-TAGGG GTAGGG GTAGGG G-TAGGG
19757129 GTAGGG GTAGGG
1 GTAGGG GTAGGG
19757141 ATGGTGTAAT
Statistics
Matches: 42, Mismatches: 10, Indels: 6
0.72 0.17 0.10
Matches are distributed among these distances:
5 2 0.05
6 32 0.76
7 8 0.19
ACGTcount: A:0.16, C:0.00, G:0.59, T:0.25
Consensus pattern (6 bp):
GTAGGG
Found at i:19757248 original size:12 final size:12
Alignment explanation
Indices: 19757231--19757268 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
19757221 GTATGGGTTC
19757231 AGGGTAGGGGTA
1 AGGGTAGGGGTA
19757243 AGGGTAGGGGTA
1 AGGGTAGGGGTA
*
19757255 GGGGTTA-GGGTA
1 AGGG-TAGGGGTA
19757267 AG
1 AG
19757269 TATGGGGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
12 21 0.91
13 2 0.09
ACGTcount: A:0.24, C:0.00, G:0.58, T:0.18
Consensus pattern (12 bp):
AGGGTAGGGGTA
Found at i:19757255 original size:18 final size:18
Alignment explanation
Indices: 19757232--19757410 Score: 63
Period size: 18 Copynumber: 10.3 Consensus size: 18
19757222 TATGGGTTCA
19757232 GGGTAGGGGTAAGGGTAG
1 GGGTAGGGGTAAGGGTAG
*
19757250 GGGTAGGGGTTAGGGTA-
1 GGGTAGGGGTAAGGGTAG
* *
19757267 -AGTATGGGGTTA-GGTATG
1 GGGTA-GGGGTAAGGGTA-G
* * *
19757285 AGTTAGGGGCAAGGGTAG
1 GGGTAGGGGTAAGGGTAG
* **
19757303 GGGTATGGGT--GGGTTT
1 GGGTAGGGGTAAGGGTAG
* * *
19757319 AGGTATGTGGTAGGGGT-G
1 GGGTA-GGGGTAAGGGTAG
* * *
19757337 TGGTA-GGGTTAGGATAG
1 GGGTAGGGGTAAGGGTAG
*
19757354 GGGT-GAGGGTCAGGGTAG
1 GGGTAG-GGGTAAGGGTAG
** *
19757372 GTATA-GGG-AAGGGTGG
1 GGGTAGGGGTAAGGGTAG
* *
19757388 GGGTAGGGATAGGGGTAG
1 GGGTAGGGGTAAGGGTAG
19757406 GGGTA
1 GGGTA
19757411 ATGGTTAGGG
Statistics
Matches: 114, Mismatches: 33, Indels: 28
0.65 0.19 0.16
Matches are distributed among these distances:
16 30 0.26
17 19 0.17
18 55 0.48
19 10 0.09
ACGTcount: A:0.20, C:0.01, G:0.55, T:0.23
Consensus pattern (18 bp):
GGGTAGGGGTAAGGGTAG
Found at i:19757384 original size:22 final size:22
Alignment explanation
Indices: 19757359--19757401 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
19757349 GATAGGGGTG
*
19757359 AGGGTCAGGGTAGGTATAGGGA
1 AGGGTCAGGGTAGGGATAGGGA
**
19757381 AGGGTGGGGGTAGGGATAGGG
1 AGGGTCAGGGTAGGGATAGGG
19757402 GTAGGGGTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.23, C:0.02, G:0.58, T:0.16
Consensus pattern (22 bp):
AGGGTCAGGGTAGGGATAGGGA
Found at i:19757446 original size:22 final size:22
Alignment explanation
Indices: 19757419--19757461 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
19757409 TAATGGTTAG
*
19757419 GGTAAGC-GTGGGGTAGGGGAGA
1 GGTAAGCTG-GGGGCAGGGGAGA
19757441 GGTAAGCTGGGGGCAGGGGAG
1 GGTAAGCTGGGGGCAGGGGAG
19757462 GGGGAAGTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.21, C:0.07, G:0.60, T:0.12
Consensus pattern (22 bp):
GGTAAGCTGGGGGCAGGGGAGA
Found at i:19757806 original size:7 final size:6
Alignment explanation
Indices: 19757787--19757829 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
19757777 TAAGGTATGT
* * * *
19757787 GGTAGG GGTAGG GGTAAG GGTAGG GTTAGG GTTAGG GTTAGG G
1 GGTAGG GGTAGG GGTAGG GGTAGG GGTAGG GGTAGG GGTAGG G
19757830 ATTTGGGTGG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.19, C:0.00, G:0.58, T:0.23
Consensus pattern (6 bp):
GGTAGG
Found at i:19758342 original size:6 final size:6
Alignment explanation
Indices: 19758239--19758412 Score: 67
Period size: 6 Copynumber: 29.2 Consensus size: 6
19758229 GCGATAATAC
* * * * * *
19758239 AGGGGT AAGGGT AGAGGT AGGGTT AGGGGT AGGGTT AAGGGT -GGGGC
1 AGGGGT AGGGGT AGGGGT AGGGGT AGGGGT AGGGGT AGGGGT AGGGGT
* * * *
19758286 A-AGGT ATGGGGT AGGAGGT AGGGGGT AAAAGGGT AGGGTT CGGGGT AGGGGT
1 AGGGGT A-GGGGT AGG-GGT A-GGGGT --AGGGGT AGGGGT AGGGGT AGGGGT
* * * *
19758338 GGGGGT A--GGT ATGGTGT AGTGGT -GGGGT A-GGGT ATGGGTT A-GGGT
1 AGGGGT AGGGGT A-GGGGT AGGGGT AGGGGT AGGGGT A-GGGGT AGGGGT
* * * *
19758383 AGGGGT TGTGCT -GGGGT CGGGGT AGGGGT A
1 AGGGGT AGGGGT AGGGGT AGGGGT AGGGGT A
19758413 AAGGAAAGGG
Statistics
Matches: 119, Mismatches: 34, Indels: 30
0.65 0.19 0.16
Matches are distributed among these distances:
4 4 0.03
5 22 0.18
6 68 0.57
7 18 0.15
8 6 0.05
9 1 0.01
ACGTcount: A:0.18, C:0.02, G:0.57, T:0.22
Consensus pattern (6 bp):
AGGGGT
Found at i:19758361 original size:23 final size:23
Alignment explanation
Indices: 19758316--19758374 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
19758306 GGGGGTAAAA
*
19758316 GGGTAGGGT-TCGGGGTAGGGGTGG
1 GGGTAGGGTAT-GGTGTAGGGGT-G
*
19758340 GGGTA-GGTATGGTGTAGTGGTG
1 GGGTAGGGTATGGTGTAGGGGTG
19758362 GGGTAGGGTATGG
1 GGGTAGGGTATGG
19758375 GTTAGGGTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
22 6 0.19
23 19 0.61
24 6 0.19
ACGTcount: A:0.12, C:0.02, G:0.61, T:0.25
Consensus pattern (23 bp):
GGGTAGGGTATGGTGTAGGGGTG
Found at i:19758387 original size:23 final size:22
Alignment explanation
Indices: 19758316--19758388 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 22
19758306 GGGGGTAAAA
*
19758316 GGGTAGGGT-TCGGGGTAGGGGTGG
1 GGGTAGGGTAT-GGGTTA-GGGT-G
19758340 GGGTA-GGTAT-GGTGTAGTGGTG
1 GGGTAGGGTATGGGT-TAG-GGTG
19758362 GGGTAGGGTATGGGTTAGGGTAG
1 GGGTAGGGTATGGGTTAGGGT-G
19758385 GGGT
1 GGGT
19758389 TGTGCTGGGG
Statistics
Matches: 42, Mismatches: 1, Indels: 13
0.75 0.02 0.23
Matches are distributed among these distances:
22 12 0.29
23 21 0.50
24 9 0.21
ACGTcount: A:0.12, C:0.01, G:0.60, T:0.26
Consensus pattern (22 bp):
GGGTAGGGTATGGGTTAGGGTG
Found at i:19758758 original size:13 final size:16
Alignment explanation
Indices: 19758740--19758779 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
19758730 AGGGTTAAGG
19758740 TAGGGTT-GGG-GG-T
1 TAGGGTTAGGGTGGCT
19758753 TAGGGTTAGGGTGGCT
1 TAGGGTTAGGGTGGCT
*
19758769 TAGGGGTAGGG
1 TAGGGTTAGGG
19758780 GTGGGGGTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 7 0.30
14 3 0.13
15 2 0.09
16 11 0.48
ACGTcount: A:0.12, C:0.03, G:0.57, T:0.28
Consensus pattern (16 bp):
TAGGGTTAGGGTGGCT
Found at i:19759003 original size:29 final size:28
Alignment explanation
Indices: 19758971--19759036 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 28
19758961 TAAGGGTCGA
19758971 GGTAGGGGAGGAAGTGGGGTAAGGG-TATG
1 GGTAGGGGAGGAA-TGGGGTAAGGGCT-TG
* *
19759000 GGTAGGGATAGGTATGGGGTAAGGGCTTG
1 GGTAGGG-GAGGAATGGGGTAAGGGCTTG
19759029 GGTAGGGG
1 GGTAGGGG
19759037 TACGGGTTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
29 27 0.84
30 5 0.16
ACGTcount: A:0.21, C:0.02, G:0.58, T:0.20
Consensus pattern (28 bp):
GGTAGGGGAGGAATGGGGTAAGGGCTTG
Found at i:19759078 original size:6 final size:6
Alignment explanation
Indices: 19759028--19759330 Score: 96
Period size: 6 Copynumber: 51.0 Consensus size: 6
19759018 GTAAGGGCTT
* * * *
19759028 GGGTAG GGGTACG GGTTAG GGTTA- GGGT-G GGGTA- AGGTGG GGGTAG
1 GGGTAG GGGTA-G GGGTAG GGGTAG GGGTAG GGGTAG GGGTAG GGGTAG
* * * *
19759074 GGGTAG GGTTAG GGGT-G AGGGTAG GGGTAG TGGTGG GGGTA- -GGTATT
1 GGGTAG GGGTAG GGGTAG -GGGTAG GGGTAG GGGTAG GGGTAG GGGTA-G
* * * * * * * *
19759121 GGGTA- AGGTTG GGGTTAA GGGTAA GGCTAA GGGTAG GGGTAT GGGTAA
1 GGGTAG GGGTAG GGG-TAG GGGTAG GGGTAG GGGTAG GGGTAG GGGTAG
* * * * * * *
19759169 GAGTAG GGTTAG GGGT-G CGTTA- AGGTAG GGGTAT GGGT-G GTGGCAG
1 GGGTAG GGGTAG GGGTAG GGGTAG GGGTAG GGGTAG GGGTAG G-GGTAG
* * * * *
19759215 GGGTTG GGGTAG GGAT-G GGGTA- AGGTATG GGGTAG GGTTA- GGGTGG
1 GGGTAG GGGTAG GGGTAG GGGTAG GGGTA-G GGGTAG GGGTAG GGGTAG
* * * *
19759261 GGGTA- GGTTTG GGGTAG GGGTCAG GGTGAAGG TGAGGTAA GGGT-G GGGTATG
1 GGGTAG GGGTAG GGGTAG GGGT-AG GG-GTA-G -G-GGTAG GGGTAG GGGTA-G
*
19759313 GGGTAG GGGTTG GGGTAG
1 GGGTAG GGGTAG GGGTAG
19759331 ATAAGGGGTA
Statistics
Matches: 214, Mismatches: 56, Indels: 54
0.66 0.17 0.17
Matches are distributed among these distances:
4 4 0.02
5 39 0.18
6 133 0.62
7 32 0.15
8 2 0.01
9 3 0.01
10 1 0.00
ACGTcount: A:0.17, C:0.02, G:0.58, T:0.23
Consensus pattern (6 bp):
GGGTAG
Found at i:19759287 original size:29 final size:29
Alignment explanation
Indices: 19759214--19759288 Score: 91
Period size: 29 Copynumber: 2.6 Consensus size: 29
19759204 GGTGGTGGCA
*
19759214 GGGGTTGGGGTAGGGAT-GGGGTAAGGTAT
1 GGGGTAGGGGTAGGG-TGGGGGTAAGGTAT
* *
19759243 GGGGTAGGGTTAGGGTGGGGGT-AGGTTT
1 GGGGTAGGGGTAGGGTGGGGGTAAGGTAT
19759271 GGGGTAGGGGTCAGGGTG
1 GGGGTAGGGGT-AGGGTG
19759289 AAGGTGAGGT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
28 16 0.40
29 24 0.60
ACGTcount: A:0.13, C:0.01, G:0.61, T:0.24
Consensus pattern (29 bp):
GGGGTAGGGGTAGGGTGGGGGTAAGGTAT
Found at i:19759401 original size:23 final size:23
Alignment explanation
Indices: 19759350--19759419 Score: 54
Period size: 23 Copynumber: 3.0 Consensus size: 23
19759340 ATCGGTGGAG
19759350 TAGGGCTAGGGTA-AGGGT-GGTGGT
1 TAGGG-TA-GGTATAGGGTAGG-GGT
*
19759374 AAGGGTAGGTATAGGGTAGGGGT
1 TAGGGTAGGTATAGGGTAGGGGT
* ** *
19759397 TAGGGAAGGGGTATGGTAGGGGT
1 TAGGGTAGGTATAGGGTAGGGGT
19759420 CGGGTTAAGG
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
22 4 0.11
23 28 0.74
24 6 0.16
ACGTcount: A:0.21, C:0.01, G:0.54, T:0.23
Consensus pattern (23 bp):
TAGGGTAGGTATAGGGTAGGGGT
Found at i:19759611 original size:6 final size:6
Alignment explanation
Indices: 19759600--19759662 Score: 74
Period size: 6 Copynumber: 10.5 Consensus size: 6
19759590 ACCCTTTCTC
* * **
19759600 ACCCCT ACCCCT TCCCCT ACCCCT ACTCCT ACCCCT A-AGCT ACCCCTT
1 ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT ACCCC-T
19759648 ACCCCT ACCCCT ACC
1 ACCCCT ACCCCT ACC
19759663 TTACCGCATA
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
5 3 0.06
6 38 0.81
7 6 0.13
ACGTcount: A:0.17, C:0.60, G:0.02, T:0.21
Consensus pattern (6 bp):
ACCCCT
Found at i:19759920 original size:22 final size:22
Alignment explanation
Indices: 19759895--19759985 Score: 89
Period size: 23 Copynumber: 4.1 Consensus size: 22
19759885 CCCTACCCCC
19759895 ACCTTACCCCACCCTTAACCCT
1 ACCTTACCCCACCCTTAACCCT
19759917 ACCTT-CCCCTACCC-TAACCCT
1 ACCTTACCCC-ACCCTTAACCCT
* *
19759938 AACCTTACCCCACCGTTACCCCAT
1 -ACCTTACCCCACCCTTAACCC-T
* *
19759962 ACC-TACCCCCACCCCTACCCCT
1 ACCTTA-CCCCACCCTTAACCCT
19759984 AC
1 AC
19759986 AGTGGATGAA
Statistics
Matches: 59, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
21 11 0.19
22 22 0.37
23 25 0.42
24 1 0.02
ACGTcount: A:0.22, C:0.57, G:0.01, T:0.20
Consensus pattern (22 bp):
ACCTTACCCCACCCTTAACCCT
Found at i:19760565 original size:11 final size:11
Alignment explanation
Indices: 19760535--19760693 Score: 105
Period size: 11 Copynumber: 14.1 Consensus size: 11
19760525 GTATGGAGCA
*
19760535 AGGGTAAGGGT
1 AGGGTAGGGGT
19760546 AAGGGTAGGGGT
1 -AGGGTAGGGGT
*
19760558 AGGATA-GGGT
1 AGGGTAGGGGT
*
19760568 ACGGTAGGGGT
1 AGGGTAGGGGT
*
19760579 AAGGGTGGGGGT
1 -AGGGTAGGGGT
19760591 AGGGATA-GGGT
1 AGGG-TAGGGGT
* * *
19760602 ACGATA-AGGT
1 AGGGTAGGGGT
19760612 ATGGGTAGGGGT
1 A-GGGTAGGGGT
* *
19760624 AGGGTTGGGAT
1 AGGGTAGGGGT
19760635 A-GGTATGGGGT
1 AGGGTA-GGGGT
19760646 AGGGGT-GGTGGT
1 A-GGGTAGG-GGT
19760658 AGGGTAGGGGT
1 AGGGTAGGGGT
19760669 AGAGGTAGGGGCT
1 AG-GGTAGGGG-T
19760682 -GGGTTAGGGGT
1 AGGG-TAGGGGT
19760693 A
1 A
19760694 CGAGTGGTGT
Statistics
Matches: 116, Mismatches: 17, Indels: 28
0.72 0.11 0.17
Matches are distributed among these distances:
10 17 0.15
11 50 0.43
12 45 0.39
13 4 0.03
ACGTcount: A:0.21, C:0.02, G:0.56, T:0.21
Consensus pattern (11 bp):
AGGGTAGGGGT
Found at i:19760626 original size:27 final size:28
Alignment explanation
Indices: 19760586--19760651 Score: 82
Period size: 27 Copynumber: 2.4 Consensus size: 28
19760576 GGTAAGGGTG
*
19760586 GGGGTAGGGATAGGG-TACGATAAGGTAT
1 GGGGTAGGGGTAGGGTTACGAT-AGGTAT
**
19760614 -GGGTAGGGGTAGGGTTGGGATAGGTAT
1 GGGGTAGGGGTAGGGTTACGATAGGTAT
19760641 GGGGTAGGGGT
1 GGGGTAGGGGT
19760652 GGTGGTAGGG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 19 0.58
28 14 0.42
ACGTcount: A:0.21, C:0.02, G:0.55, T:0.23
Consensus pattern (28 bp):
GGGGTAGGGGTAGGGTTACGATAGGTAT
Found at i:19760662 original size:17 final size:17
Alignment explanation
Indices: 19760642--19760678 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
19760632 GATAGGTATG
* *
19760642 GGGTAGGGGTGGTGGTA
1 GGGTAGGGGTAGAGGTA
19760659 GGGTAGGGGTAGAGGTA
1 GGGTAGGGGTAGAGGTA
19760676 GGG
1 GGG
19760679 GCTGGGTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.65, T:0.19
Consensus pattern (17 bp):
GGGTAGGGGTAGAGGTA
Found at i:19760668 original size:6 final size:6
Alignment explanation
Indices: 19760536--19760693 Score: 70
Period size: 6 Copynumber: 27.8 Consensus size: 6
19760526 TATGGAGCAA
* * * * *
19760536 GGGTAA GGGTAA GGGTAG GGGTA- GGATA- GGGTA- CGGTAG GGGTAA
1 GGGTAG GGGTAG GGGTAG GGGTAG GGGTAG GGGTAG GGGTAG GGGTAG
* * * * * *
19760581 GGGTGG GGGTAG GGATA- GGGTA- CGATA- AGGTAT GGGTAG GGGTA-
1 GGGTAG GGGTAG GGGTAG GGGTAG GGGTAG GGGTAG GGGTAG GGGTAG
* *
19760625 GGGTTG GGATA- -GGTATG GGGTAG GGGT-G GTGGTA- GGGTAG GGGTAG
1 GGGTAG GGGTAG GGGTA-G GGGTAG GGGTAG G-GGTAG GGGTAG GGGTAG
* *
19760671 AGGTAG GGGCT-G GGTTAG GGGTA
1 GGGTAG GGG-TAG GGGTAG GGGTA
19760694 CGAGTGGTGT
Statistics
Matches: 116, Mismatches: 25, Indels: 22
0.71 0.15 0.13
Matches are distributed among these distances:
4 3 0.03
5 33 0.28
6 75 0.65
7 5 0.04
ACGTcount: A:0.21, C:0.02, G:0.56, T:0.21
Consensus pattern (6 bp):
GGGTAG
Found at i:19761056 original size:23 final size:23
Alignment explanation
Indices: 19761025--19761095 Score: 90
Period size: 23 Copynumber: 3.1 Consensus size: 23
19761015 TGGGGGTGGT
19761025 GGTAAGGGTAAGCATAGTGGTAG
1 GGTAAGGGTAAGCATAGTGGTAG
* * * *
19761048 GGTAGGGGTAAG-GTAGGGGTGG
1 GGTAAGGGTAAGCATAGTGGTAG
19761070 TGGTAAGGGTAAGCATAGTGGTAG
1 -GGTAAGGGTAAGCATAGTGGTAG
19761094 GG
1 GG
19761096 GCAAGGTAAG
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
22 7 0.18
23 24 0.63
24 7 0.18
ACGTcount: A:0.25, C:0.03, G:0.51, T:0.21
Consensus pattern (23 bp):
GGTAAGGGTAAGCATAGTGGTAG
Found at i:19761077 original size:46 final size:47
Alignment explanation
Indices: 19761007--19761095 Score: 162
Period size: 46 Copynumber: 1.9 Consensus size: 47
19760997 TTAGATATGA
*
19761007 GGTAAGGGTGGGGGTGGTGGTAAGGGTAAGCATAGTGGTAGGGTAGG
1 GGTAAGGGTAGGGGTGGTGGTAAGGGTAAGCATAGTGGTAGGGTAGG
19761054 GGTAA-GGTAGGGGTGGTGGTAAGGGTAAGCATAGTGGTAGGG
1 GGTAAGGGTAGGGGTGGTGGTAAGGGTAAGCATAGTGGTAGGG
19761096 GCAAGGTAAG
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
46 36 0.88
47 5 0.12
ACGTcount: A:0.22, C:0.02, G:0.54, T:0.21
Consensus pattern (47 bp):
GGTAAGGGTAGGGGTGGTGGTAAGGGTAAGCATAGTGGTAGGGTAGG
Found at i:19761104 original size:46 final size:46
Alignment explanation
Indices: 19761005--19761106 Score: 152
Period size: 46 Copynumber: 2.2 Consensus size: 46
19760995 GGTTAGATAT
* *
19761005 GAGGTAAGGGTGGGGGTGGTGGTAAGGGTAAGCATAGTGGTAGGGTA
1 GAGGTAA-GGTAGGGGTGGTGGTAAGGGTAAGCATAGTGGTAGGGCA
*
19761052 GGGGTAAGGTAGGGGTGGTGGTAAGGGTAAGCATAGTGGTAGGGGCA
1 GAGGTAAGGTAGGGGTGGTGGTAAGGGTAAGCATAGTGGTA-GGGCA
19761099 -AGGTAAGG
1 GAGGTAAGG
19761107 ATGGTGGTAT
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
46 40 0.80
47 10 0.20
ACGTcount: A:0.25, C:0.03, G:0.53, T:0.20
Consensus pattern (46 bp):
GAGGTAAGGTAGGGGTGGTGGTAAGGGTAAGCATAGTGGTAGGGCA
Found at i:19761379 original size:12 final size:12
Alignment explanation
Indices: 19761362--19761399 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
19761352 AGGTATGTAT
19761362 TAGGGGTAAGGG
1 TAGGGGTAAGGG
*
19761374 TAGGGGTAA-GT
1 TAGGGGTAAGGG
19761385 TAGGGTGTAAGGG
1 TAGGG-GTAAGGG
19761398 TA
1 TA
19761400 AAAGGGTAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
11 6 0.27
12 13 0.59
13 3 0.14
ACGTcount: A:0.26, C:0.00, G:0.50, T:0.24
Consensus pattern (12 bp):
TAGGGGTAAGGG
Found at i:19761561 original size:18 final size:18
Alignment explanation
Indices: 19761538--19761574 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
19761528 CTACTCTTTA
19761538 CCCTACCACCATCCCTAC
1 CCCTACCACCATCCCTAC
* *
19761556 CCCTACCACTATCCTTAC
1 CCCTACCACCATCCCTAC
19761574 C
1 C
19761575 TTAGATTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.57, G:0.00, T:0.22
Consensus pattern (18 bp):
CCCTACCACCATCCCTAC
Found at i:19761773 original size:22 final size:22
Alignment explanation
Indices: 19761731--19761773 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
19761721 ACCTTTCCCC
*
19761731 CACCCATACCCCTAGCTTACCT
1 CACCCATACCCCTAGCCTACCT
*
19761753 CACCCTTACCCC-AGACCTACC
1 CACCCATACCCCTAG-CCTACC
19761774 CCTACCATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.23, C:0.53, G:0.05, T:0.19
Consensus pattern (22 bp):
CACCCATACCCCTAGCCTACCT
Found at i:19761839 original size:6 final size:6
Alignment explanation
Indices: 19761823--19761860 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
19761813 ACAAACCACC
*
19761823 ACCCC- ACCCCT ACCCCT ACCCCT ACCCCT ACCCAT ACC
1 ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT ACC
19761861 TTACCCCATA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
5 5 0.16
6 26 0.84
ACGTcount: A:0.21, C:0.66, G:0.00, T:0.13
Consensus pattern (6 bp):
ACCCCT
Found at i:19761927 original size:22 final size:21
Alignment explanation
Indices: 19761901--19761957 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 21
19761891 TACTCATAAC
19761901 CCCACCCCTACCAG-CACCTTA
1 CCCACCCCTACCAGAC-CCTTA
*
19761922 CACCACCCCAACCAGACCCTTA
1 C-CCACCCCTACCAGACCCTTA
19761944 CCCTTACCCCTACC
1 CCC--ACCCCTACC
19761958 CTTACCCGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
21 3 0.10
22 18 0.60
23 9 0.30
ACGTcount: A:0.25, C:0.58, G:0.04, T:0.14
Consensus pattern (21 bp):
CCCACCCCTACCAGACCCTTA
Found at i:19761970 original size:18 final size:18
Alignment explanation
Indices: 19761937--19761972 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
19761927 CCCCAACCAG
**
19761937 ACCCTTACCCTTACCCCT
1 ACCCTTACCCGAACCCCT
19761955 ACCCTTACCCGAACCCCT
1 ACCCTTACCCGAACCCCT
19761973 GCCCCATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.56, G:0.03, T:0.22
Consensus pattern (18 bp):
ACCCTTACCCGAACCCCT
Found at i:19762055 original size:18 final size:18
Alignment explanation
Indices: 19762032--19762073 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
19762022 CTACCCCATA
19762032 TCTACCATA-ACCCCTACC
1 TCTACCATATACCCC-ACC
*
19762050 TCTACCCTATACCCCACC
1 TCTACCATATACCCCACC
*
19762068 CCTACC
1 TCTACC
19762074 CCTACCTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.24, C:0.55, G:0.00, T:0.21
Consensus pattern (18 bp):
TCTACCATATACCCCACC
Found at i:19762069 original size:24 final size:23
Alignment explanation
Indices: 19762041--19762150 Score: 71
Period size: 23 Copynumber: 4.4 Consensus size: 23
19762031 ATCTACCATA
*
19762041 ACCCCTACCTCTACCCTATACCCC
1 ACCCCTACCCCTA-CCTATACCCC
*
19762065 ACCCCTACCCCTACCTTTACCCCTACC
1 ACCCCTACCCCTACCTATA--CC--CC
*
19762092 ATATCCCCTAGCCCTACCTATACCCC
1 --A-CCCCTACCCCTACCTATACCCC
* *
19762118 ACACCTACCCTCAACCT-TACCCC
1 ACCCCTACCC-CTACCTATACCCC
19762141 TACCCC-ACCC
1 -ACCCCTACCC
19762151 AAACCCCTAC
Statistics
Matches: 69, Mismatches: 8, Indels: 19
0.72 0.08 0.20
Matches are distributed among these distances:
23 22 0.32
24 22 0.32
25 2 0.03
26 2 0.03
27 2 0.03
28 2 0.03
29 1 0.01
30 16 0.23
ACGTcount: A:0.22, C:0.57, G:0.01, T:0.20
Consensus pattern (23 bp):
ACCCCTACCCCTACCTATACCCC
Found at i:19762183 original size:23 final size:22
Alignment explanation
Indices: 19762114--19762184 Score: 63
Period size: 23 Copynumber: 3.0 Consensus size: 22
19762104 CCTACCTATA
19762114 CCCCACACCTACCCTCAACCTTAC
1 CCCCACACCTACCCT-AACC-TAC
* * *
19762138 CCCTAC-CCCACCCAAACCCCTAC
1 CCCCACACCTACCCTAA--CCTAC
19762161 CCCCACACCTACCCTAACACTAC
1 CCCCACACCTACCCTAAC-CTAC
19762184 C
1 C
19762185 TTACTACTAC
Statistics
Matches: 37, Mismatches: 6, Indels: 9
0.71 0.12 0.17
Matches are distributed among these distances:
22 3 0.08
23 19 0.51
24 15 0.41
ACGTcount: A:0.27, C:0.61, G:0.00, T:0.13
Consensus pattern (22 bp):
CCCCACACCTACCCTAACCTAC
Found at i:19762233 original size:7 final size:6
Alignment explanation
Indices: 19762041--19762433 Score: 116
Period size: 6 Copynumber: 66.8 Consensus size: 6
19762031 ATCTACCATA
* * **
19762041 ACCCCT ACCTCT ACCCTAT ACCCC- ACCCCT ACCCCT ACCTTT ACCCCT
1 ACCCCT ACCCCT ACCC-CT ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT
* * ** * * *
19762089 A-CCAT ATCCCCT AGCCCT ACCTAT ACCCC- ACACCT A-CCCT CAACCTT
1 ACCCCT A-CCCCT ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT -ACCCCT
** * * * *
19762136 ACCCCT ACCCC- ACCCAA ACCCCT ACCCCC ACACCT A-CCCT AACACT
1 ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT
* ** * **
19762182 A-CCTT ACTACT ACCCCTT ACCTACCC ACCCCT ATGCCT ACCCCT ACCCCCT
1 ACCCCT ACCCCT ACCCC-T ACC--CCT ACCCCT ACCCCT ACCCCT A-CCCCT
* * * * * * *
19762233 A-ACCT A-CCCT ATACCTT ACCCC- ATCCCT ACCCCA ACCCCT ACCTCG
1 ACCCCT ACCCCT A-CCCCT ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT
* * * ** * * * ** * *
19762279 A-CCTT ACCCCC ACCCTT A-CCAA AACCTT ACCGC- ACCGTT ATCCAT
1 ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT
* * * * * * * *
19762324 ACCCCC ACCCCC ACCCAT ACCCCT ACTCTT ACCCCA ACCCTT ACCCTT
1 ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT
* * *
19762372 ACCCCT ACCTCT A--CCT ATCCCT ACCCCT ACCCCT ACCCCT ACCCCC
1 ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT
*
19762418 A-CCCT AACCCT ACCCC
1 ACCCCT ACCCCT ACCCC
19762434 CACCTTACCC
Statistics
Matches: 273, Mismatches: 91, Indels: 46
0.67 0.22 0.11
Matches are distributed among these distances:
4 3 0.01
5 52 0.19
6 187 0.68
7 26 0.10
8 3 0.01
9 2 0.01
ACGTcount: A:0.23, C:0.56, G:0.01, T:0.20
Consensus pattern (6 bp):
ACCCCT
Found at i:19762357 original size:18 final size:18
Alignment explanation
Indices: 19762320--19762467 Score: 85
Period size: 18 Copynumber: 8.5 Consensus size: 18
19762310 GCACCGTTAT
* **
19762320 CCATACCCCCACCCCCAC
1 CCATACCCCTACCCTTAC
*
19762338 CCATACCCCTACTCTTACC
1 CCATACCCCTACCCTTA-C
*
19762357 CCA-ACCCTTACCCTTAC
1 CCATACCCCTACCCTTAC
* *
19762374 CCCTACCTCTA-CC-TATC
1 CCATACCCCTACCCTTA-C
*
19762391 CC-TACCCCTACCCCTAC
1 CCATACCCCTACCCTTAC
* * *
19762408 CCCTACCCCCACCCTAAC
1 CCATACCCCTACCCTTAC
*
19762426 CC-TACCCCCA-CCTTAC
1 CCATACCCCTACCCTTAC
** *
19762442 CCA-ACCTATACCCCTAC
1 CCATACCCCTACCCTTAC
*
19762459 CTATACCCC
1 CCATACCCC
19762468 CATACCTACC
Statistics
Matches: 100, Mismatches: 21, Indels: 18
0.72 0.15 0.13
Matches are distributed among these distances:
16 20 0.20
17 28 0.28
18 48 0.48
19 4 0.04
ACGTcount: A:0.22, C:0.59, G:0.00, T:0.19
Consensus pattern (18 bp):
CCATACCCCTACCCTTAC
Found at i:19762428 original size:17 final size:17
Alignment explanation
Indices: 19762385--19762437 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 17
19762375 CCTACCTCTA
* *
19762385 CCTATCCCTACCCCTACC
1 CCTAACCCTACCCCCA-C
*
19762403 CCTACCCCTACCCCCAC
1 CCTAACCCTACCCCCAC
19762420 CCTAACCCTACCCCCAC
1 CCTAACCCTACCCCCAC
19762437 C
1 C
19762438 TTACCCAACC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
17 18 0.56
18 14 0.44
ACGTcount: A:0.19, C:0.66, G:0.00, T:0.15
Consensus pattern (17 bp):
CCTAACCCTACCCCCAC
Found at i:19762566 original size:22 final size:22
Alignment explanation
Indices: 19762541--19762586 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
19762531 TACCTTTACT
19762541 CCTACCCT-AACCCTACCCTATA
1 CCTACCCTCAACCCTACCCT-TA
*
19762563 CCTACCCTCATCCCTACCCTTA
1 CCTACCCTCAACCCTACCCTTA
19762585 CC
1 CC
19762587 AATACCCCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.22, C:0.54, G:0.00, T:0.24
Consensus pattern (22 bp):
CCTACCCTCAACCCTACCCTTA
Found at i:19762580 original size:12 final size:11
Alignment explanation
Indices: 19762541--19762582 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
19762531 TACCTTTACT
*
19762541 CCTACCCTAAC
1 CCTACCCTATC
*
19762552 CCTACCCTATA
1 CCTACCCTATC
19762563 CCTACCCTCATC
1 CCTACCCT-ATC
19762575 CCTACCCT
1 CCTACCCT
19762583 TACCAATACC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
11 17 0.63
12 10 0.37
ACGTcount: A:0.21, C:0.55, G:0.00, T:0.24
Consensus pattern (11 bp):
CCTACCCTATC
Found at i:19762765 original size:23 final size:23
Alignment explanation
Indices: 19762712--19762765 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
19762702 TTACCGTTAT
*
19762712 CCCTACCATTACCCCTACCCCAC
1 CCCTACCCTTACCCCTACCCCAC
** *
19762735 CCAAACCCTTACCCCATA-CCTAC
1 CCCTACCCTTACCCC-TACCCCAC
19762758 CCCTACCC
1 CCCTACCC
19762766 CCAACCCTGC
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
23 22 0.92
24 2 0.08
ACGTcount: A:0.24, C:0.59, G:0.00, T:0.17
Consensus pattern (23 bp):
CCCTACCCTTACCCCTACCCCAC
Found at i:19762936 original size:12 final size:12
Alignment explanation
Indices: 19762904--19762941 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
19762894 CTATCTCTGT
*
19762904 CCCCACTCCTA-
1 CCCCACACCTAC
*
19762915 CCCCAAACCTAC
1 CCCCACACCTAC
19762927 CCCCACACCTAC
1 CCCCACACCTAC
19762939 CCC
1 CCC
19762942 TACCCTTACC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
11 9 0.39
12 14 0.61
ACGTcount: A:0.24, C:0.66, G:0.00, T:0.11
Consensus pattern (12 bp):
CCCCACACCTAC
Found at i:19763155 original size:39 final size:38
Alignment explanation
Indices: 19763108--19763183 Score: 93
Period size: 39 Copynumber: 2.0 Consensus size: 38
19763098 TACCTCTACC
*
19763108 CCTACCCCACC-CACCTCTACCCATGCACCA-ACCCCTAA
1 CCTACCCCACCTCACC-CTACCCATAC-CCACACCCCTAA
*
19763146 CCTACCCCCACCTTACCCTACCCATACCCACACCCCTA
1 CCTA-CCCCACCTCACCCTACCCATACCCACACCCCTA
19763184 CCTGATACCT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
38 7 0.21
39 23 0.70
40 3 0.09
ACGTcount: A:0.25, C:0.59, G:0.01, T:0.14
Consensus pattern (38 bp):
CCTACCCCACCTCACCCTACCCATACCCACACCCCTAA
Found at i:19763303 original size:24 final size:23
Alignment explanation
Indices: 19763271--19763321 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
19763261 ATCTACCTTA
19763271 ACCCACACC-CTCACCCCTAACCCT
1 ACCCACACCAC-CACCCC-AACCCT
* *
19763295 ACCCCCACCACCACCCCAACCTT
1 ACCCACACCACCACCCCAACCCT
19763318 ACCC
1 ACCC
19763322 TACGCCTACC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 9 0.38
24 14 0.58
25 1 0.04
ACGTcount: A:0.25, C:0.65, G:0.00, T:0.10
Consensus pattern (23 bp):
ACCCACACCACCACCCCAACCCT
Found at i:19763503 original size:41 final size:41
Alignment explanation
Indices: 19763458--19763547 Score: 108
Period size: 41 Copynumber: 2.2 Consensus size: 41
19763448 CTATACCTAT
* ** *
19763458 CCCAACCCTTTCCTTTACAATAACCCCACCCCTACCACTAC
1 CCCAACCCTTGCCCATACAACAACCCCACCCCTACCACTAC
* * *
19763499 CCCAACCATTGCCCATACAACAACCCTACCCCTACTACTAC
1 CCCAACCCTTGCCCATACAACAACCCCACCCCTACCACTAC
*
19763540 CCTAACCC
1 CCCAACCC
19763548 AATACCCCAC
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.29, C:0.51, G:0.01, T:0.19
Consensus pattern (41 bp):
CCCAACCCTTGCCCATACAACAACCCCACCCCTACCACTAC
Found at i:19763679 original size:22 final size:23
Alignment explanation
Indices: 19763644--19763688 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
19763634 TATACCATTT
19763644 CCTCTACCCATACCCCAAGCTTA
1 CCTCTACCCATACCCCAAGCTTA
* *
19763667 CCTC-ACCCTTACCCCATGCTTA
1 CCTCTACCCATACCCCAAGCTTA
19763689 ACCTTATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.22, C:0.49, G:0.04, T:0.24
Consensus pattern (23 bp):
CCTCTACCCATACCCCAAGCTTA
Found at i:19763847 original size:12 final size:12
Alignment explanation
Indices: 19763830--19763856 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
19763820 CCCTTATACA
19763830 ACCGTTACCCCT
1 ACCGTTACCCCT
19763842 ACCGTTACCCCT
1 ACCGTTACCCCT
19763854 ACC
1 ACC
19763857 ACACCCCAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.19, C:0.52, G:0.07, T:0.22
Consensus pattern (12 bp):
ACCGTTACCCCT
Found at i:19763856 original size:6 final size:6
Alignment explanation
Indices: 19763835--19763955 Score: 54
Period size: 6 Copynumber: 21.0 Consensus size: 6
19763825 ATACAACCGT
** * * * **
19763835 TACCCC TACCGT TACCCC TACCAC -ACCCC AACCCT TA-CCC TATACC
1 TACCCC TACCCC TACCCC TACCCC TACCCC TACCCC TACCCC TACCCC
* * * * **
19763881 TACCAC TACCCC TAACCC TA-CCC TAACCC AACCCC -ACAGC TA-CCC
1 TACCCC TACCCC TACCCC TACCCC TACCCC TACCCC TACCCC TACCCC
* * * *
19763926 TACTCC TACCCC AACCCC TGCCTC TACCCC
1 TACCCC TACCCC TACCCC TACCCC TACCCC
19763956 AACTCTTACC
Statistics
Matches: 81, Mismatches: 29, Indels: 10
0.68 0.24 0.08
Matches are distributed among these distances:
5 19 0.23
6 62 0.77
ACGTcount: A:0.24, C:0.56, G:0.02, T:0.17
Consensus pattern (6 bp):
TACCCC
Found at i:19764173 original size:18 final size:18
Alignment explanation
Indices: 19764150--19764202 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
19764140 CCTATACCCA
*
19764150 TACCCCTACCCATGCCTC
1 TACCCCTACCCATGCCCC
* *
19764168 TACCCCTACCCCTACCCC
1 TACCCCTACCCATGCCCC
*
19764186 TACCCCAACCACATGCC
1 TACCCCTACC-CATGCC
19764203 ACACCTATCC
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 24 0.86
19 4 0.14
ACGTcount: A:0.21, C:0.58, G:0.04, T:0.17
Consensus pattern (18 bp):
TACCCCTACCCATGCCCC
Found at i:19764191 original size:6 final size:6
Alignment explanation
Indices: 19764144--19764191 Score: 60
Period size: 6 Copynumber: 8.0 Consensus size: 6
19764134 ACCCAACCTA
* * * *
19764144 TACCCA TACCCC TACCCA TGCCTC TACCCC TACCCC TACCCC TACCCC
1 TACCCC TACCCC TACCCC TACCCC TACCCC TACCCC TACCCC TACCCC
19764192 AACCACATGC
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.19, C:0.60, G:0.02, T:0.19
Consensus pattern (6 bp):
TACCCC
Found at i:19764312 original size:24 final size:24
Alignment explanation
Indices: 19764285--19764334 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
19764275 CCTACTCGCG
*
19764285 CCATCACACCTACCCCTACCCTTA
1 CCATCACACCTACCCCTACCCATA
* * *
19764309 CCATTACCCCTACTCCTACCCATA
1 CCATCACACCTACCCCTACCCATA
19764333 CC
1 CC
19764335 TTACCCCATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.24, C:0.54, G:0.00, T:0.22
Consensus pattern (24 bp):
CCATCACACCTACCCCTACCCATA
Found at i:19764496 original size:18 final size:16
Alignment explanation
Indices: 19764450--19764533 Score: 71
Period size: 16 Copynumber: 5.1 Consensus size: 16
19764440 CATACCTACC
*
19764450 CCCACCCATACCCTAA
1 CCCACCCCTACCCTAA
19764466 CCCA-CCCTCACCCTAA
1 CCCACCCCT-ACCCTAA
19764482 CCTACACCCCTACCCTAA
1 CC--CACCCCTACCCTAA
** *
19764500 CCCTTCCCTAACCCTAT
1 CCCACCCCT-ACCCTAA
**
19764517 CCCATACCTACCCTAA
1 CCCACCCCTACCCTAA
19764533 C
1 C
19764534 ACTTACCCCT
Statistics
Matches: 56, Mismatches: 7, Indels: 10
0.77 0.10 0.14
Matches are distributed among these distances:
15 3 0.05
16 25 0.45
17 13 0.23
18 11 0.20
19 4 0.07
ACGTcount: A:0.26, C:0.56, G:0.00, T:0.18
Consensus pattern (16 bp):
CCCACCCCTACCCTAA
Found at i:19764649 original size:12 final size:12
Alignment explanation
Indices: 19764632--19764657 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
19764622 CAACTACCAT
19764632 TACCTCAACCCC
1 TACCTCAACCCC
19764644 TACCTCAACCCC
1 TACCTCAACCCC
19764656 TA
1 TA
19764658 ACCTTACCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.54, G:0.00, T:0.19
Consensus pattern (12 bp):
TACCTCAACCCC
Found at i:19764984 original size:5 final size:5
Alignment explanation
Indices: 19764971--19765049 Score: 77
Period size: 5 Copynumber: 14.8 Consensus size: 5
19764961 CTCACCCCCG
* * *
19764971 ACCCC ACCCT ACCCCT ACCCT ACCCT ACCCT ACCCAT ATCCCTT CCCCG
1 ACCCT ACCCT A-CCCT ACCCT ACCCT ACCCT ACCC-T A-CCC-T ACCCT
*
19765020 ACCCC ACCCT ACCCCT ACCCT ACCCT ACCC
1 ACCCT ACCCT A-CCCT ACCCT ACCCT ACCC
19765050 ATATCCCTTC
Statistics
Matches: 63, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
5 44 0.70
6 15 0.24
7 4 0.06
ACGTcount: A:0.19, C:0.63, G:0.01, T:0.16
Consensus pattern (5 bp):
ACCCT
Found at i:19764990 original size:16 final size:16
Alignment explanation
Indices: 19764966--19765068 Score: 100
Period size: 16 Copynumber: 6.2 Consensus size: 16
19764956 TTACCCTCAC
* *
19764966 CCCCGACCCCACCCTA
1 CCCCTACCCTACCCTA
19764982 CCCCTACCCTACCCTA
1 CCCCTACCCTACCCTA
*
19764998 -CCCTACCCATATCCCTT
1 CCCCTACCC-TA-CCCTA
* *
19765015 CCCCGACCCCACCCTA
1 CCCCTACCCTACCCTA
19765031 CCCCTACCCTACCCTA
1 CCCCTACCCTACCCTA
* *
19765047 CCCATATCCCTTCCCCTA
1 CCCCTA-CCC-TACCCTA
19765065 CCCC
1 CCCC
19765069 ATTCTACCCC
Statistics
Matches: 71, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
15 8 0.11
16 39 0.55
17 8 0.11
18 16 0.23
ACGTcount: A:0.17, C:0.63, G:0.02, T:0.17
Consensus pattern (16 bp):
CCCCTACCCTACCCTA
Found at i:19765026 original size:49 final size:49
Alignment explanation
Indices: 19764966--19765081 Score: 170
Period size: 44 Copynumber: 2.5 Consensus size: 49
19764956 TTACCCTCAC
19764966 CCCCGACCCCACCCTACCCCTACCCTACCCTACCCTACCCATATCCCTT
1 CCCCGACCCCACCCTACCCCTACCCTACCCTACCCTACCCATATCCCTT
19765015 CCCCGACCCCACCCTA---C--CCCTACCCTACCCTACCCATATCCCTT
1 CCCCGACCCCACCCTACCCCTACCCTACCCTACCCTACCCATATCCCTT
* **
19765059 CCCCTACCCCATTCTACCCCTAC
1 CCCCGACCCCACCCTACCCCTAC
19765082 TTTAACCCCA
Statistics
Matches: 59, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
44 40 0.68
46 1 0.02
47 1 0.02
49 17 0.29
ACGTcount: A:0.18, C:0.61, G:0.02, T:0.19
Consensus pattern (49 bp):
CCCCGACCCCACCCTACCCCTACCCTACCCTACCCTACCCATATCCCTT
Found at i:19765122 original size:6 final size:6
Alignment explanation
Indices: 19765108--19765155 Score: 53
Period size: 6 Copynumber: 8.2 Consensus size: 6
19765098 ATGTACACCC
* * * *
19765108 ACCCCT ACCCTT A-CCCT ACCCCC ACCCCT ACGCTT ACCCCT ACCCCT
1 ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT
19765155 A
1 A
19765156 GTTTTACCCT
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
5 4 0.12
6 29 0.88
ACGTcount: A:0.19, C:0.60, G:0.02, T:0.19
Consensus pattern (6 bp):
ACCCCT
Found at i:19765128 original size:17 final size:17
Alignment explanation
Indices: 19765104--19765155 Score: 61
Period size: 18 Copynumber: 3.1 Consensus size: 17
19765094 TCATATGTAC
*
19765104 ACCC-ACCCCTACCCTT
1 ACCCTACCCCTACCCCT
*
19765120 ACCCTACCCCCACCCCT
1 ACCCTACCCCTACCCCT
*
19765137 ACGCTTACCCCTACCCCT
1 AC-CCTACCCCTACCCCT
19765155 A
1 A
19765156 GTTTTACCCT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
16 4 0.13
17 12 0.40
18 14 0.47
ACGTcount: A:0.19, C:0.62, G:0.02, T:0.17
Consensus pattern (17 bp):
ACCCTACCCCTACCCCT
Found at i:19765132 original size:23 final size:24
Alignment explanation
Indices: 19765105--19765153 Score: 82
Period size: 23 Copynumber: 2.1 Consensus size: 24
19765095 CATATGTACA
19765105 CCCACCCCTACCCTTA-CCCTACC
1 CCCACCCCTACCCTTACCCCTACC
*
19765128 CCCACCCCTACGCTTACCCCTACC
1 CCCACCCCTACCCTTACCCCTACC
19765152 CC
1 CC
19765154 TAGTTTTACC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 15 0.62
24 9 0.38
ACGTcount: A:0.16, C:0.65, G:0.02, T:0.16
Consensus pattern (24 bp):
CCCACCCCTACCCTTACCCCTACC
Found at i:19765437 original size:12 final size:13
Alignment explanation
Indices: 19765422--19765461 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 13
19765412 GTACCCCAAC
*
19765422 CCCCT-ACCCTCA
1 CCCCTAACCCTAA
19765434 CCCCTAACCCTAA
1 CCCCTAACCCTAA
19765447 -CCCTAA-CCTAA
1 CCCCTAACCCTAA
19765458 CCCC
1 CCCC
19765462 ACCTCTACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
11 5 0.20
12 14 0.56
13 6 0.24
ACGTcount: A:0.25, C:0.60, G:0.00, T:0.15
Consensus pattern (13 bp):
CCCCTAACCCTAA
Found at i:19765509 original size:18 final size:18
Alignment explanation
Indices: 19765486--19765532 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
19765476 CTTACCGTAG
19765486 CCCTACCCCCAACCTTAC
1 CCCTACCCCCAACCTTAC
* *
19765504 CCCTACCCCTACCCTTAC
1 CCCTACCCCCAACCTTAC
**
19765522 CTTTACCCCCA
1 CCCTACCCCCA
19765533 CCTCTATCAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.19, C:0.60, G:0.00, T:0.21
Consensus pattern (18 bp):
CCCTACCCCCAACCTTAC
Found at i:19765533 original size:70 final size:68
Alignment explanation
Indices: 19765410--19765561 Score: 164
Period size: 70 Copynumber: 2.2 Consensus size: 68
19765400 ATACCTTTAC
* *
19765410 CCGTACCCCAACCCCCTACCCTCACCCCTAACCCTAACCCTAACCTAACCCCACCTCTACCAACA
1 CCGTA-CCCTACCCCCTAACCTCACCCCTAACCCTAACCCTAACCTAACCCCACCTCTACCAACA
*
19765475 TCTTA
65 -CCTA
* * * * *
19765480 CCGTAGCCCTACCCCC-AACCTTACCCCTACCCCT-ACCCTTACCTTTACCCCCACCTCTATCAA
1 CCGTA-CCCTACCCCCTAACCTCACCCCTAACCCTAACCCTAACC--TAACCCCACCTCTACCAA
19765543 CACCTA
63 CACCTA
*
19765549 CCCTACCCTACCC
1 CCGTACCCTACCC
19765562 AACCCTTACC
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
68 16 0.23
69 22 0.31
70 32 0.46
ACGTcount: A:0.24, C:0.55, G:0.02, T:0.19
Consensus pattern (68 bp):
CCGTACCCTACCCCCTAACCTCACCCCTAACCCTAACCCTAACCTAACCCCACCTCTACCAACAC
CTA
Found at i:19765670 original size:23 final size:24
Alignment explanation
Indices: 19765636--19765688 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 24
19765626 TACACTAAAT
19765636 CCCA-CCTCTACCACTACCCATAC
1 CCCACCCTCTACCACTACCCATAC
* * *
19765659 CCCACCCT-TACCCCTACCCCTAT
1 CCCACCCTCTACCACTACCCATAC
19765682 CCCACCC
1 CCCACCC
19765689 CCACTCCTAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 23 0.88
24 3 0.12
ACGTcount: A:0.21, C:0.62, G:0.00, T:0.17
Consensus pattern (24 bp):
CCCACCCTCTACCACTACCCATAC
Found at i:19765671 original size:6 final size:6
Alignment explanation
Indices: 19765643--19765734 Score: 66
Period size: 6 Copynumber: 15.8 Consensus size: 6
19765633 AATCCCACCT
* * * *
19765643 CTACCA CTACCC ATACCC C-ACCC TTACCC CTACCC CTATCC C-ACCC
1 CTACCC CTACCC CTACCC CTACCC CTACCC CTACCC CTACCC CTACCC
* * * * *
19765689 CCACTC CTACCC CATA--C CTACTC TTACCC TTACCC CTACCC CTACC
1 CTACCC CTACCC C-TACCC CTACCC CTACCC CTACCC CTACCC CTACC
19765735 ATACTGCTAC
Statistics
Matches: 68, Mismatches: 13, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
4 2 0.03
5 10 0.15
6 54 0.79
7 2 0.03
ACGTcount: A:0.21, C:0.59, G:0.00, T:0.21
Consensus pattern (6 bp):
CTACCC
Found at i:19765677 original size:12 final size:12
Alignment explanation
Indices: 19765498--19765734 Score: 52
Period size: 12 Copynumber: 20.1 Consensus size: 12
19765488 CTACCCCCAA
19765498 CCTTACCCCTAC
1 CCTTACCCCTAC
* *
19765510 CCCTACCCTTAC
1 CCTTACCCCTAC
* *
19765522 CTTTACCCCCAC
1 CCTTACCCCTAC
*
19765534 CTCTATCAACACCTAC
1 C-CT-T--ACCCCTAC
19765550 CC-TA-CCCTAC
1 CCTTACCCCTAC
* *
19765560 CC-AACCCTTA-
1 CCTTACCCCTAC
19765570 CCTTCACCCCTAGC
1 CCTT-ACCCCTA-C
*
19765584 CC-TACCCCCA-
1 CCTTACCCCTAC
* *
19765594 TCTTA-CCCAAC
1 CCTTACCCCTAC
*
19765605 CATTA-CCCTCAC
1 CCTTACCCCT-AC
*
19765617 CCTAACCCCTAC
1 CCTTACCCCTAC
* * *
19765629 ACTAAATCCC-A-
1 CCT-TACCCCTAC
*
19765640 CCTCTACCACTAC
1 CCT-TACCCCTAC
*
19765653 CCATACCCC-AC
1 CCTTACCCCTAC
19765664 CCTTACCCCTAC
1 CCTTACCCCTAC
* *
19765676 CCCTATCCC-AC
1 CCTTACCCCTAC
** *
19765687 CCCCACTCCTACC
1 CCTTACCCCTA-C
*
19765700 CCATA--CCTAC
1 CCTTACCCCTAC
* *
19765710 TCTTACCCTTAC
1 CCTTACCCCTAC
*
19765722 CCCTACCCCTAC
1 CCTTACCCCTAC
19765734 C
1 C
19765735 ATACTGCTAC
Statistics
Matches: 159, Mismatches: 45, Indels: 42
0.65 0.18 0.17
Matches are distributed among these distances:
10 19 0.12
11 40 0.25
12 71 0.45
13 18 0.11
14 3 0.02
15 1 0.01
16 7 0.04
ACGTcount: A:0.22, C:0.56, G:0.00, T:0.22
Consensus pattern (12 bp):
CCTTACCCCTAC
Found at i:19765718 original size:99 final size:96
Alignment explanation
Indices: 19765546--19765727 Score: 217
Period size: 99 Copynumber: 1.9 Consensus size: 96
19765536 CTATCAACAC
* *
19765546 CTACCCTACCCTACCCAACCCTTACCTTCACCCCTAGCCCTACCCCCATCTTACCCAACCATTAC
1 CTACCCTACCCTACCCAACCCTTACCCTCACCCCTAGCCCTACCCCCATCCTACCCAACCA-TAC
19765611 CCTCACCCTAACCCCTACACTAAATCCCACCT
65 CCTCACCCTAACCCCTACACTAAATCCCACCT
* *
19765643 CTACCACTACCCATACCCCACCCTTACCC-CTACCCCTATCCC-ACCCCCACTCCTACCCCATAC
1 CTACC-CTACCC-TACCCAACCCTTACCCTC-ACCCCTAGCCCTACCCCCA-TCCTA-CCCA-AC
* * *
19765706 C-TACTCTTACCCTTACCCCTAC
60 CATACCCTCACCCTAACCCCTAC
19765728 CCCTACCATA
Statistics
Matches: 72, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
97 5 0.07
98 14 0.19
99 46 0.64
100 4 0.06
101 3 0.04
ACGTcount: A:0.23, C:0.55, G:0.01, T:0.21
Consensus pattern (96 bp):
CTACCCTACCCTACCCAACCCTTACCCTCACCCCTAGCCCTACCCCCATCCTACCCAACCATACC
CTCACCCTAACCCCTACACTAAATCCCACCT
Found at i:19765907 original size:24 final size:23
Alignment explanation
Indices: 19765849--19765907 Score: 57
Period size: 24 Copynumber: 2.5 Consensus size: 23
19765839 TACCTATACA
19765849 TACCTTCACCCCTACCCCTACACC
1 TACCTTCA-CCCTACCCCTACACC
* * *
19765873 AACCCTAACCCTAACCCCTAC-CAC
1 TACCTTCACCCT-ACCCCTACAC-C
19765897 TACCTTCACCC
1 TACCTTCACCC
19765908 CCACTCTCTC
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
23 5 0.19
24 22 0.81
ACGTcount: A:0.25, C:0.56, G:0.00, T:0.19
Consensus pattern (23 bp):
TACCTTCACCCTACCCCTACACC
Found at i:19766374 original size:18 final size:17
Alignment explanation
Indices: 19766324--19766372 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 17
19766314 TAAACCCTAC
*
19766324 ACCTACCCATACCC-AT
1 ACCTACCCCTACCCAAT
19766340 ACCCTCACCCCTACCCAAT
1 A-CCT-ACCCCTACCCAAT
19766359 ACCTACCCCTACCC
1 ACCTACCCCTACCC
19766373 CACCCCATCC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
16 1 0.03
17 13 0.45
18 12 0.41
19 3 0.10
ACGTcount: A:0.27, C:0.57, G:0.00, T:0.16
Consensus pattern (17 bp):
ACCTACCCCTACCCAAT
Found at i:19766538 original size:35 final size:37
Alignment explanation
Indices: 19766442--19766538 Score: 85
Period size: 35 Copynumber: 2.6 Consensus size: 37
19766432 CCACACCTCT
*
19766442 ACCCCTACCCCTACCCCTACTCCTACCTCATAGCTACCC
1 ACCCCTACCCC-AACCCTAC-CCTACCTCATAGCTACCC
* *
19766481 ACAACCCTA-CCCATATCGTACCCTAACCTC-TA-CT-CCC
1 AC--CCCTACCCCA-ACCCTACCCT-ACCTCATAGCTACCC
19766518 ACCCCTACCCCAACCCTACCC
1 ACCCCTACCCCAACCCTACCC
19766539 CATTACTACC
Statistics
Matches: 48, Mismatches: 5, Indels: 14
0.72 0.07 0.21
Matches are distributed among these distances:
35 12 0.25
36 4 0.08
37 5 0.10
38 2 0.04
39 8 0.17
40 12 0.25
41 5 0.10
ACGTcount: A:0.24, C:0.56, G:0.02, T:0.19
Consensus pattern (37 bp):
ACCCCTACCCCAACCCTACCCTACCTCATAGCTACCC
Found at i:19766578 original size:17 final size:17
Alignment explanation
Indices: 19766558--19766602 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 17
19766548 CCCATACTTT
*
19766558 CCCTTACCCCACCCCTA
1 CCCTTACCCCACCCCAA
*
19766575 CCCTTACCTCAACCCCAA
1 CCCTTACC-CCACCCCAA
*
19766593 CCTTTACCCC
1 CCCTTACCCC
19766603 TACACTTACC
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
17 9 0.39
18 14 0.61
ACGTcount: A:0.20, C:0.60, G:0.00, T:0.20
Consensus pattern (17 bp):
CCCTTACCCCACCCCAA
Found at i:19766802 original size:13 final size:12
Alignment explanation
Indices: 19766788--19766830 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
19766778 TACCCCTACT
19766788 TTTACCCCCATC
1 TTTACCCCCATC
*
19766800 TTTACCCCTAT-
1 TTTACCCCCATC
*
19766811 TCTTACACCCATC
1 T-TTACCCCCATC
19766824 TTTACCC
1 TTTACCC
19766831 TATACCTATC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 1 0.04
12 23 0.92
13 1 0.04
ACGTcount: A:0.19, C:0.44, G:0.00, T:0.37
Consensus pattern (12 bp):
TTTACCCCCATC
Found at i:19766804 original size:24 final size:24
Alignment explanation
Indices: 19766777--19766830 Score: 83
Period size: 24 Copynumber: 2.2 Consensus size: 24
19766767 AAACCTACCC
*
19766777 TTACCCCTACTT-TTACCCCCATCT
1 TTACCCCTA-TTCTTACACCCATCT
19766801 TTACCCCTATTCTTACACCCATCT
1 TTACCCCTATTCTTACACCCATCT
19766825 TTACCC
1 TTACCC
19766831 TATACCTATC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
23 2 0.07
24 26 0.93
ACGTcount: A:0.19, C:0.44, G:0.00, T:0.37
Consensus pattern (24 bp):
TTACCCCTATTCTTACACCCATCT
Found at i:19767016 original size:12 final size:12
Alignment explanation
Indices: 19767001--19767101 Score: 59
Period size: 12 Copynumber: 8.6 Consensus size: 12
19766991 CCCACCCATA
19767001 CCCTACCTCTAC
1 CCCTACCTCTAC
19767013 CCCTACAC-CTAC
1 CCCTAC-CTCTAC
* *
19767025 CTCAACCTCTAC
1 CCCTACCTCTAC
* *
19767037 CCTTACCTCGAC
1 CCCTACCTCTAC
*
19767049 CGCTACCTCATA-
1 CCCTACCTC-TAC
*
19767061 -CCTATCTCTAC
1 CCCTACCTCTAC
*
19767072 CCATACCAT-TAC
1 CCCTACC-TCTAC
* *
19767084 CTC-ACCCCTAC
1 CCCTACCTCTAC
19767095 CCCTACC
1 CCCTACC
19767102 CTTACCCTAA
Statistics
Matches: 64, Mismatches: 17, Indels: 16
0.66 0.18 0.16
Matches are distributed among these distances:
10 2 0.03
11 15 0.23
12 44 0.69
13 3 0.05
ACGTcount: A:0.22, C:0.52, G:0.02, T:0.24
Consensus pattern (12 bp):
CCCTACCTCTAC
Found at i:19767025 original size:18 final size:17
Alignment explanation
Indices: 19766994--19767055 Score: 61
Period size: 18 Copynumber: 3.5 Consensus size: 17
19766984 CCTTACCCCC
* *
19766994 ACCCATACCCTACCTCT
1 ACCCCTACCCTACCTCA
19767011 ACCCCTACACCTACCTCA
1 ACCCCTAC-CCTACCTCA
* *
19767029 ACCTCTACCCTTACCTCG
1 ACCCCTACCC-TACCTCA
*
19767047 ACCGCTACC
1 ACCCCTACC
19767056 TCATACCTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
17 9 0.24
18 29 0.76
ACGTcount: A:0.23, C:0.53, G:0.03, T:0.21
Consensus pattern (17 bp):
ACCCCTACCCTACCTCA
Found at i:19767093 original size:29 final size:29
Alignment explanation
Indices: 19767052--19767107 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 29
19767042 CCTCGACCGC
* * *
19767052 TACCTCATACCTATCTCTACCCATACCAT
1 TACCTCACACCTACCCCTACCCATACCAT
* *
19767081 TACCTCACCCCTACCCCTACCCTTACC
1 TACCTCACACCTACCCCTACCCATACC
19767108 CTAACCCTAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 22 1.00
ACGTcount: A:0.23, C:0.50, G:0.00, T:0.27
Consensus pattern (29 bp):
TACCTCACACCTACCCCTACCCATACCAT
Found at i:19767094 original size:23 final size:23
Alignment explanation
Indices: 19767068--19767124 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 23
19767058 ATACCTATCT
*
19767068 CTACCCATACCATTA-CCTCACCC
1 CTACCCATACCATTACCCT-AACC
* *
19767091 CTACCCCTACCCTTACCCTAACC
1 CTACCCATACCATTACCCTAACC
19767114 CTACCTCATAC
1 CTACC-CATAC
19767125 ATACACCCAC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
23 21 0.75
24 7 0.25
ACGTcount: A:0.25, C:0.53, G:0.00, T:0.23
Consensus pattern (23 bp):
CTACCCATACCATTACCCTAACC
Found at i:19767248 original size:6 final size:6
Alignment explanation
Indices: 19767237--19767444 Score: 100
Period size: 6 Copynumber: 35.8 Consensus size: 6
19767227 ACTTTACCCA
*
19767237 ACCCCT ACCCCT ACCCCAT A--CCT ATCCCT ACCCCT ACCCCAT A--CCT
1 ACCCCT ACCCCT ACCCC-T ACCCCT ACCCCT ACCCCT ACCCC-T ACCCCT
* * * * * **
19767283 ATCCAT ACCCCT ACCCCT ACCTCT ACCCCC ATTCCCT -CCTTT ACCCCT
1 ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT A-CCCCT ACCCCT ACCCCT
* * * *
19767331 TCCCCT A-CCCT AACCCT A-CCCT ACCCTT AACCCAT A--CCT ACCCC-
1 ACCCCT ACCCCT ACCCCT ACCCCT ACCCCT -ACCCCT ACCCCT ACCCCT
* * * * *
19767375 AACCCT ACCCGT GCCCCT A-CCCT CACCCCT A-CCCT A-CCTT CACCCTT
1 ACCCCT ACCCCT ACCCCT ACCCCT -ACCCCT ACCCCT ACCCCT -ACCCCT
* *
19767422 AACCCT ACCCTT ACCCCT ACCCC
1 ACCCCT ACCCCT ACCCCT ACCCC
19767445 ACCACTACTC
Statistics
Matches: 153, Mismatches: 31, Indels: 36
0.70 0.14 0.16
Matches are distributed among these distances:
4 7 0.05
5 32 0.21
6 94 0.61
7 20 0.13
ACGTcount: A:0.20, C:0.58, G:0.01, T:0.22
Consensus pattern (6 bp):
ACCCCT
Found at i:19767268 original size:23 final size:23
Alignment explanation
Indices: 19767239--19767304 Score: 116
Period size: 23 Copynumber: 2.9 Consensus size: 23
19767229 TTTACCCAAC
19767239 CCCTACCCCTACCCCATACCTAT
1 CCCTACCCCTACCCCATACCTAT
19767262 CCCTACCCCTACCCCATACCTAT
1 CCCTACCCCTACCCCATACCTAT
*
19767285 CCATACCCCTACCCC-TACCT
1 CCCTACCCCTACCCCATACCT
19767305 CTACCCCCAT
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
22 5 0.12
23 37 0.88
ACGTcount: A:0.21, C:0.58, G:0.00, T:0.21
Consensus pattern (23 bp):
CCCTACCCCTACCCCATACCTAT
Found at i:19767283 original size:17 final size:16
Alignment explanation
Indices: 19767240--19767274 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
19767230 TTACCCAACC
19767240 CCTACCCCTACCCCATA
1 CCTACCCCTACCCC-TA
*
19767257 CCTATCCCTACCCCTA
1 CCTACCCCTACCCCTA
19767273 CC
1 CC
19767275 CCATACCTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.20, C:0.60, G:0.00, T:0.20
Consensus pattern (16 bp):
CCTACCCCTACCCCTA
Found at i:19767347 original size:17 final size:16
Alignment explanation
Indices: 19767327--19767443 Score: 51
Period size: 17 Copynumber: 6.9 Consensus size: 16
19767317 CCTCCTTTAC
19767327 CCCTTCCCCTACCCTAA
1 CCCTTCCCCTACCCT-A
*
19767344 CCC-TACCCTACCCTTAA
1 CCCTTCCCCTACCC-T-A
* * *
19767361 CCCAT-ACCTACCCCAA
1 CCCTTCCCCTA-CCCTA
* * *
19767377 CCCTACCCGTGCCCCTA
1 CCCTTCCCCT-ACCCTA
*
19767394 CCCTCACCCCTACCCTA
1 CCCT-TCCCCTACCCTA
19767411 -CCTTCACCCTTAACCCTA
1 CCCTTC-CCC-T-ACCCTA
19767429 CCCTTACCCCTACCC
1 CCCTT-CCCCTACCC
19767444 CACCACTACT
Statistics
Matches: 77, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
15 1 0.01
16 19 0.25
17 33 0.43
18 16 0.21
19 7 0.09
20 1 0.01
ACGTcount: A:0.20, C:0.58, G:0.02, T:0.21
Consensus pattern (16 bp):
CCCTTCCCCTACCCTA
Found at i:19767592 original size:6 final size:6
Alignment explanation
Indices: 19767581--19767615 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
19767571 TAGTATACCT
* *
19767581 ACCCCC ACCCCC ACCCCC ACCCCC ATCCCA ACCCC
1 ACCCCC ACCCCC ACCCCC ACCCCC ACCCCC ACCCC
19767616 TACCTATACC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.20, C:0.77, G:0.00, T:0.03
Consensus pattern (6 bp):
ACCCCC
Found at i:19767643 original size:13 final size:14
Alignment explanation
Indices: 19767618--19767646 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
19767608 CCAACCCCTA
19767618 CCTATACCCTTACC
1 CCTATACCCTTACC
19767632 CCTATA-CCTTACC
1 CCTATACCCTTACC
19767645 CC
1 CC
19767647 AAGCCTTCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.21, C:0.52, G:0.00, T:0.28
Consensus pattern (14 bp):
CCTATACCCTTACC
Found at i:19775108 original size:12 final size:12
Alignment explanation
Indices: 19775091--19775122 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
19775081 GGTTGTATGC
19775091 CACAAAGGGTTG
1 CACAAAGGGTTG
19775103 CACAAAGGGTTG
1 CACAAAGGGTTG
19775115 CACAAAGG
1 CACAAAGG
19775123 TTTAGTCTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.38, C:0.19, G:0.31, T:0.12
Consensus pattern (12 bp):
CACAAAGGGTTG
Found at i:19775585 original size:21 final size:21
Alignment explanation
Indices: 19775559--19775617 Score: 100
Period size: 21 Copynumber: 2.8 Consensus size: 21
19775549 CTAGGCACAC
* *
19775559 AGGCTTGAGCGCTAAGGGCCA
1 AGGCTTGAGCACCAAGGGCCA
19775580 AGGCTTGAGCACCAAGGGCCA
1 AGGCTTGAGCACCAAGGGCCA
19775601 AGGCTTGAGCACCAAGG
1 AGGCTTGAGCACCAAGG
19775618 ATAGTTGTAG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.27, C:0.25, G:0.36, T:0.12
Consensus pattern (21 bp):
AGGCTTGAGCACCAAGGGCCA
Found at i:19776240 original size:45 final size:45
Alignment explanation
Indices: 19776190--19776291 Score: 125
Period size: 45 Copynumber: 2.3 Consensus size: 45
19776180 ATAAAAGATA
* *
19776190 GCCCTTGGTGCAAACAGTTCCCTC-AAGCACCATCGACACATGTTG
1 GCCCTTGGTGCAAACAGTTCCCTCGAA-CACCATCGACAAATGTCG
* * * *
19776235 GCCCTTGGTACAGATAGTTGCCTCGAACACCATCGACAAATGTCG
1 GCCCTTGGTGCAAACAGTTCCCTCGAACACCATCGACAAATGTCG
*
19776280 GGCCTTGGTGCA
1 GCCCTTGGTGCA
19776292 TGCATATACC
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
45 46 0.96
46 2 0.04
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.23
Consensus pattern (45 bp):
GCCCTTGGTGCAAACAGTTCCCTCGAACACCATCGACAAATGTCG
Found at i:19776596 original size:45 final size:45
Alignment explanation
Indices: 19776533--19776630 Score: 142
Period size: 45 Copynumber: 2.2 Consensus size: 45
19776523 AGAAGATTAT
* *
19776533 CCTTAGTGTGAGTGGTTACCTCAAACACCATCGGCATATGCTAGC
1 CCTTAGTGTGAGTAGTTACCTCAAACACCATCGGCACATGCTAGC
* * * *
19776578 CCTTGGTGTGGGTAGTTACCTCAAACATCATCGGCACATGCTAGG
1 CCTTAGTGTGAGTAGTTACCTCAAACACCATCGGCACATGCTAGC
19776623 CCTTAGTG
1 CCTTAGTG
19776631 CAAGCACATG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (45 bp):
CCTTAGTGTGAGTAGTTACCTCAAACACCATCGGCACATGCTAGC
Found at i:19776805 original size:8 final size:8
Alignment explanation
Indices: 19776787--19776826 Score: 57
Period size: 8 Copynumber: 5.1 Consensus size: 8
19776777 CCCTAGATGG
19776787 GCACACCAA
1 GCAC-CCAA
19776796 GCACCCAA
1 GCACCCAA
19776804 G--CCCAA
1 GCACCCAA
19776810 GCACCCAA
1 GCACCCAA
19776818 GCACCCAA
1 GCACCCAA
19776826 G
1 G
19776827 ACCAAGGCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
6 6 0.21
8 19 0.66
9 4 0.14
ACGTcount: A:0.38, C:0.47, G:0.15, T:0.00
Consensus pattern (8 bp):
GCACCCAA
Found at i:19776811 original size:14 final size:14
Alignment explanation
Indices: 19776792--19776819 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
19776782 GATGGGCACA
19776792 CCAAGCACCCAAGC
1 CCAAGCACCCAAGC
19776806 CCAAGCACCCAAGC
1 CCAAGCACCCAAGC
19776820 ACCCAAGACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.50, G:0.14, T:0.00
Consensus pattern (14 bp):
CCAAGCACCCAAGC
Found at i:19776817 original size:22 final size:23
Alignment explanation
Indices: 19776787--19776832 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 23
19776777 CCCTAGATGG
*
19776787 GCACACCAAGCACCCAAGCCCAA
1 GCACACCAAGCACCCAAGACCAA
19776810 GCAC-CCAAGCACCCAAGACCAA
1 GCACACCAAGCACCCAAGACCAA
19776832 G
1 G
19776833 GCTTGAACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.39, C:0.46, G:0.15, T:0.00
Consensus pattern (23 bp):
GCACACCAAGCACCCAAGACCAA
Found at i:19780739 original size:13 final size:13
Alignment explanation
Indices: 19780723--19780761 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
19780713 GTTGCGTCGA
*
19780723 TATATTGCCTCGG
1 TATATTGCCTCAG
*
19780736 TATATTACCTCAG
1 TATATTGCCTCAG
*
19780749 TATGTTGCCTCAG
1 TATATTGCCTCAG
19780762 ACACCTCTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (13 bp):
TATATTGCCTCAG
Found at i:19783256 original size:45 final size:45
Alignment explanation
Indices: 19783172--19783261 Score: 112
Period size: 45 Copynumber: 2.0 Consensus size: 45
19783162 CCTTAGTGCA
*
19783172 GGCAATTACCTTAAACACCATCGGCACATATTAGGCCTTGGTGTG
1 GGCAATTACCTTAAACACCATCGGCACATACTAGGCCTTGGTGTG
* * *
19783217 GGCAATTGCCTTAACCACCATTGGCACA-AGCT-GGCCCTTGGTGTG
1 GGCAATTACCTTAAACACCATCGGCACATA-CTAGG-CCTTGGTGTG
19783262 AGCACATGCC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
44 3 0.08
45 36 0.92
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (45 bp):
GGCAATTACCTTAAACACCATCGGCACATACTAGGCCTTGGTGTG
Found at i:19783340 original size:45 final size:45
Alignment explanation
Indices: 19783291--19783435 Score: 107
Period size: 45 Copynumber: 3.2 Consensus size: 45
19783281 ATCAGTAGAA
*
19783291 GATGGCCCTTGGTGAGGGCAGTTGCCTTGAACACCATCTACACAT
1 GATGGCCCTTAGTGAGGGCAGTTGCCTTGAACACCATCTACACAT
** * * ** * *
19783336 GATGGCTTTTAGTGTGGGCAGTTACCTCAAACACCATCGATACAT
1 GATGGCCCTTAGTGAGGGCAGTTGCCTTGAACACCATCTACACAT
* ** * *
19783381 GTTAGG-CCTTAGTGCA-GGCACATGCCTTGACCACCAT-TAGCACAA
1 GAT-GGCCCTTAGTG-AGGGCAGTTGCCTTGAACACCATCTA-CACAT
*
19783426 GCTGGCCCTT
1 GATGGCCCTT
19783436 GGTGCGGGTG
Statistics
Matches: 73, Mismatches: 23, Indels: 8
0.70 0.22 0.08
Matches are distributed among these distances:
44 3 0.04
45 68 0.93
46 2 0.03
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (45 bp):
GATGGCCCTTAGTGAGGGCAGTTGCCTTGAACACCATCTACACAT
Found at i:19795570 original size:93 final size:93
Alignment explanation
Indices: 19795411--19795587 Score: 309
Period size: 93 Copynumber: 1.9 Consensus size: 93
19795401 CAAACTTGCA
*
19795411 CATTTTGCCTTTCCAGTTGTTCTAGTGCCCGTACACTTGCATATTAGGCTAACTTAGGCTAAAAA
1 CATTTTACCTTTCCAGTTGTTCTAGTGCCCGTACACTTGCATATTAGGCTAACTTAGGCTAAAAA
19795476 GAGATGATTCCAAACCTAAAAATTTATG
66 GAGATGATTCCAAACCTAAAAATTTATG
* * * *
19795504 CATTTTACCTTTCCAGTTGTTCTAGTGTCGGTACGCTTGCATATTAGGCTTACTTAGGCTAAAAA
1 CATTTTACCTTTCCAGTTGTTCTAGTGCCCGTACACTTGCATATTAGGCTAACTTAGGCTAAAAA
19795569 GAGATGATTCCAAACCTAA
66 GAGATGATTCCAAACCTAA
19795588 GGTCGTATAG
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 79 1.00
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (93 bp):
CATTTTACCTTTCCAGTTGTTCTAGTGCCCGTACACTTGCATATTAGGCTAACTTAGGCTAAAAA
GAGATGATTCCAAACCTAAAAATTTATG
Found at i:19800774 original size:14 final size:14
Alignment explanation
Indices: 19800751--19800790 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
19800741 TCTTATTAAT
*
19800751 TTTTAA-AATATTA
1 TTTTAATAATAGTA
19800764 TTTTAATAATAGTA
1 TTTTAATAATAGTA
*
19800778 ATTTAATAATAGT
1 TTTTAATAATAGT
19800791 TCAAAAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 6 0.25
14 18 0.75
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (14 bp):
TTTTAATAATAGTA
Found at i:19801318 original size:181 final size:179
Alignment explanation
Indices: 19800768--19803486 Score: 1870
Period size: 181 Copynumber: 15.2 Consensus size: 179
19800758 ATATTATTTT
* * * *
19800768 AATAATAGTAATTTAATAATAGTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTT
1 AATAATACTAATTTATTAATA--TCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTT
* * * * * ** * * * * *
19800833 ATCAAATC-AGTTCAAATGGTTAAGACCATGAGAACAATTATTTATTTCAAATCATTTTAACCTT
64 ACCGAA-CAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTATTATGACTTT
* * * * * *
19800897 TTATTTAGTTATAAAACAATTG-TTTCAGTTCATACAAGTTTATTCAAAATAA
128 TTGTTTTGTCATAAAACAATTGTTTTTA-TTCATACAAGCTTATTCAGAATAA
* * * *
19800949 ATTAATATTAATTTATTAATAT-TAAAA--AA-AAG----AGATTTAAAAAAATAAATATGTTTA
1 AATAATACTAATTTATTAATATCAAAAATTAATAAGTAAAAGATTT-AAAAAATAAATCTGTTTA
* * * * * *
19801006 CCAAATAAGTTCATATAGTTATTACTATTTGAACAATTATCTATTT-AAA--ACTTATAACCTTT
65 CCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTA-TTATGACTTTT
** * *
19801068 TAATTTGTCATAAAACAATTG-TTTTAGTTAATACAAGTTTATTTCA-AATAA
129 TGTTTTGTCATAAAACAATTGTTTTTA-TTCATACAAGCTTA-TTCAGAATAA
* * *
19801119 AATAATACAAATTTATTAATATAAAGATAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTT
1 AATAATACTAATTTATTAATATCAA-A-AATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTT
* * * * * *
19801184 ACCGAACAAATTCAAATCA-TTATGACTATTTGAGCAATTATTTAATTCAACTTGTTATGACTTT
64 ACCGAACAAGTTCAAAT-AGTTATGACTATTTGAACAATTATCTATTTCAAATTATTATGACTTT
* * * * *
19801248 TTGTTTTATCATAAAATAATTGTTTTTATTCATACAAACATATTCAGATTAA
128 TTGTTTTGTCATAAAACAATTGTTTTTATTCATACAAGCTTATTCAGAATAA
** ** * * *
19801300 AATAATTTTAATTTATTAATATTTTGATAATTAATAAGTAAAAGATTTAAAAAATAAATATATTT
1 AATAATACTAATTTATTAATA--TCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTT
*** * * * * *
19801365 GTTGAACAAGTTTAAATAGTCATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTT
64 ACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTATTATGACTTTT
* * ** ** *
19801430 TCTTTTGTAATAAAACAATTGTTTCAATTCATATGAGCTTATT-TGAAGTAA
129 TGTTTTGTCATAAAACAATTGTTTTTATTCATACAAGCTTATTCAGAA-TAA
* * ** *
19801481 AATAAAACTAATTTATTAATATTTCAAAAATTAATGAGTATGAGAATTAAAAAA-AGAATCTGTT
1 AATAATACTAATTTATTAATA--TCAAAAATTAATAAGTAAAAGATTTAAAAAATA-AATCTGTT
* * * *
19801545 TATCGAACAAGTTCAAATAGTTATGACTATCTAAACAATTATCTATTTCTAAA-TATTATGACGT
63 TACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTC-AAATTATTATGACTT
* ** * * * * *
19801609 TTTCTTTTGTTTTAAAACAATTGGTTCTATTTATGCAAGCTTATTTAGAATAA
127 TTTGTTTTGTCATAAAACAATTGTTTTTATTCATACAAGCTTATTCAGAATAA
19801662 AATAATA-TAAATTTATTAATATTTCAAAAATTAATAAGTAAAA-ATTTAAAAAATAAATCTGTT
1 AATAATACT-AATTTATTAATA--TCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTT
* ** * * * *
19801725 TTCTTAACTCA-TTTAAATAGTTATAACTATTTGAACAATTATCTATTTCAAATCATTATGACTT
63 TACCGAAC-AAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTATTATGACTT
* ** * * * * *
19801789 TTTATTTTGTCATAAATTAATTATTTCTGTTCATACAAGTTTATT-TGTAATAA
127 TTTGTTTTGTCATAAAACAATTGTTTTTATTCATACAAGCTTATTCAG-AATAA
* * ** *
19801842 AATAATATTAATTTATTAAAATTTCAAATGTTAATAAGTAAAAGATTTAAAAAATAAATTTGTTT
1 AATAATACTAATTTATT--AATATCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTT
** * * * * * *
19801907 ACC-AAGTGAGTTCAACTAGTTATGATTATTTGAACAGTTATTTATTTCAAATCATTATAAAC-T
64 ACCGAA-CAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTATTAT-GACTT
* * * *
19801970 TTTGTTTTGTCATAAAACATTTGTTTTTGTACTCATACAAGTTTATTCAAAATAA
127 TTTGTTTTGTCATAAAACAATTG-TTTT-TATTCATACAAGCTTATTCAGAATAA
* * * ** * * * *
19802025 AATAATATTAATTTATTAATATAATAAAATTAATGAATTGGAA-ACTT-AAAAATTAGTTTGTTT
1 AATAATACTAATTTATTAATATCA-AAAATTAAT-AAGTAAAAGATTTAAAAAATAAATCTGTTT
* * * * * * * * * * *
19802088 ATCGAATAAGTTCAAAAAATCATGTCCATTTAAACTATTATCTATTTCAAATTGTTATGACATTT
64 ACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTATTATGACTTTT
* * * * ** *
19802153 TGTTTTATCGTAAAATAATTATTTTTATTCATACAAAATTATTCAAAATAA
129 TGTTTTGTCATAAAACAATTGTTTTTATTCATACAAGCTTATTCAGAATAA
* * ** *
19802204 AATAATATTAATTTATTAATATTTCTAAAATTAAT--G----AGATTTAAAATCTAACTCTGTTT
1 AATAATACTAATTTATTAATA--TCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTT
* * * * * * * * *
19802263 ACTAGATC-AGTTCAAATTGTTATAACTATTTGAACAACTATCTATCTCAGATTGTTATGA-TCT
64 AC-CGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTATTATGACTTT
* * * * * *
19802326 TTATTTTATCATAAAACAATTGTTTCTATTCATACAAACTTATTTAGAGTAA
128 TTGTTTTGTCATAAAACAATTGTTTTTATTCATACAAGCTTATTCAGAATAA
* * ** * * * * *
19802378 AATATTGCTAAACTAATAAGATTCTAAAATTAATAAGTAATAGATTTTAAAAAAT---TGTGTTT
1 AATAATACTAATTTATTAATA-TCAAAAATTAATAAGTAAAAGA-TTTAAAAAATAAATCTGTTT
* * * * * *
19802440 ACTGAACCAA-TTCAAATAGTTAAGACTATTAGAACAATTATTTATTTCAAATCATTTTGACTTT
64 ACCGAA-CAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTATTATGACTTT
* * * * * * *
19802504 TTGTTTAGTCATAAAATAATTG-TTTTAGTTCATAAAAGCTTATCCAAAAGAG
128 TTGTTTTGTCATAAAACAATTGTTTTTA-TTCATACAAGCTTATTCAGAATAA
* * * * * *
19802556 AATAATACTACTTTATTATTATTTCAAAAGTTAATATGTAAGAGATTTAAAAAATAAATCAGTTT
1 AATAATACTAATTTATTA--ATATCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTT
* * * * * * * * *
19802621 ACTGAATAAGTTCAAATACTTACG-GTCATTTGAACAACTATCTATTTCAAATTGTTATTACCTT
64 ACCGAACAAGTTCAAATAGTTATGACT-ATTTGAACAATTATCTATTTCAAATTATTATGACTTT
* * * *
19802685 TTGTTTTGTCATAAGACAATTATTTTTCA-ACATACAAGTTTATTC-GAAATAA
128 TTGTTTTGTCATAAAACAATTGTTTTT-ATTCATACAAGCTTATTCAG-AATAA
* * *
19802737 AATAATACTAATCTACTAATTATTCAAAAATTAACAAG----AGATTTAAAAAATAAATCTGTTT
1 AATAATACTAATTTATTAA-TA-TCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTT
* * * * * *
19802798 ATCAAACTAA-TTTAAATAGTT-TGACTAGTTGAACAATTATCTATTTCAAATTGTTATAAC-TT
64 ACCGAAC-AAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTATTATGACTTT
* * * * * * ** * *
19802860 TTGTTCTATAATAAAACAATTATTTTTGTTTATACAAATTTATTCATAAAAA
128 TTGTTTTGTCATAAAACAATTGTTTTTATTCATACAAGCTTATTCAGAATAA
* * * * * *
19802912 AATAATACTAATTTAGTAATATTATAAAATTAATAACTAAGAGATTTAAAAATTAAATCTGTTTG
1 AATAATACTAATTTATTAATATCA-AAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTA
** * * * * *
19802977 TTGAACCAA-TTCAAACAGTTAAGACTATATGAACAATTATTTATTTCAAATTATTATGACCTTT
65 CCGAA-CAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTATTATGACTTTT
* * * * *
19803041 TATTTTGTCATAAAACAATT-ATTTCAGCTCATACAAGCTTATTCAGAATAG
129 TGTTTTGTCATAAAACAATTGTTTTTA-TTCATACAAGCTTATTCAGAATAA
* * * * *
19803092 AGTAAAACTAATTTATTAATATTTCAAAAAATT-ATAAG----AGATTTAGAAAATAATTCTATT
1 AATAATACTAATTTATTAATA--TC-AAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTT
* * * * *
19803152 TACCGAACCAGTTCAAATAATTATAACTATTTGAACAATTATCTATTTCAAATCATTATTACTTT
63 TACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTATTATGACTTT
* * * * * **
19803217 TTATTTTGTCATAAAATAATTGTTTTTATTAATATAAGTTTGCTCA-ATATAA
128 TTGTTTTGTCATAAAACAATTGTTTTTATTCATACAAGCTTATTCAGA-ATAA
* * * *
19803269 AATAATA-TGAATTTATTAATATTTAGAAAATTAATTAGTAAGAGACTTAAAAAATAAAAT-TGT
1 AATAATACT-AATTTATTAATA-TCA-AAAATTAATAAGTAAAAGATTTAAAAAAT-AAATCTGT
* * * * * * * *
19803332 TTACCAAACCATTTCAAATAGTTTTGACTATTTGAATAATTATCTATTTTAAATCATTAT-AATA
62 TTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTATTATGACT-
* * * * * * * ** *
19803396 TTTTATTTTATCATCAAACAATTGATTCTGTTCATACTATTTTATTCAAAATAA
126 TTTTGTTTTGTCATAAAACAATTGTTTTTATTCATACAAGCTTATTCAGAATAA
* * * *
19803450 AATAATATTAATGTAATAATATTTCAAAACTTAATAA
1 AATAATACTAATTTATTAATA--TCAAAAATTAATAA
19803487 CCAAAAAAAC
Statistics
Matches: 2002, Mismatches: 431, Indels: 210
0.76 0.16 0.08
Matches are distributed among these distances:
169 1 0.00
170 70 0.03
171 14 0.01
172 53 0.03
173 18 0.01
174 73 0.04
175 118 0.06
176 53 0.03
177 210 0.10
178 105 0.05
179 162 0.08
180 241 0.12
181 787 0.39
182 50 0.02
183 47 0.02
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (179 bp):
AATAATACTAATTTATTAATATCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTAC
CGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTATTATGACTTTTTG
TTTTGTCATAAAACAATTGTTTTTATTCATACAAGCTTATTCAGAATAA
Found at i:19801533 original size:362 final size:360
Alignment explanation
Indices: 19800768--19803486 Score: 2069
Period size: 362 Copynumber: 7.6 Consensus size: 360
19800758 ATATTATTTT
* * * *
19800768 AATAATAGTAATTTAATAATAGTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTT
1 AATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTT
* * * * * ** * * * *
19800833 ATCAAATC-AGTTCAAATGGTTAAGACCATGAGAACAATTATTTATTTCAAATCATTTTAACCTT
66 ACCGAA-CAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTATTATGACCTT
* * * * * * * *
19800897 TTATTTAGTTATAAAACAATTG-TTTCAGTTCATACAAGTTTATTCAAAATAAATTAATATTAAT
130 TTGTTTTGTCATAAAACAATTGTTTTTA-TTCATACAAGCTTATTCAGAATAAAATAATACTAAT
* * * *
19800961 TTATTAATA--TTAAAA--AA-AAG----AGATTTAAAAAAATAAATATGTTTACCAAATAAGTT
194 TTATTAATATTTTAAAATTAATAAGTAAAAGATTT-AAAAAATAAATCTGTTTATCGAACAA-TT
* * * * *
19801017 CATATAGTTATTACTATTTGAACAATTATCTATTT-AAAAC-TTATAACCTTTTAATTTGTCATA
257 CAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCATA
* * * *
19801080 AAACAATTGTTTTAGTTAATACAAGTTTATTTCAAATAA
322 AAATAATTGTTTTTGTTCATACAAGTTTATTTAAAATAA
* * *
19801119 AATAATACAAATTTATTAATA--TAAAGATAATTAATAAGTAAAAGATTTAAAAAATAAATATGT
1 AATAATACTAATTTATTAATATTTCAA-A-AATTAATAAGTAAGAGATTTAAAAAATAAATATGT
* * * * * * *
19801182 TTACCGAACAAATTCAAATCA-TTATGACTATTTGAGCAATTATTTAATTCAACTTGTTATGACT
64 TTACCGAACAAGTTCAAAT-AGTTATGACTATTTGAACAATTATCTATTTCAAATTATTATGACC
* * * * * **
19801246 TTTTGTTTTATCATAAAATAATTGTTTTTATTCATACAAACATATTCAGATTAAAATAATTTTAA
128 TTTTGTTTTGTCATAAAACAATTGTTTTTATTCATACAAGCTTATTCAGAATAAAATAATACTAA
* * * * *
19801311 TTTATTAATATTTTGATAATTAATAAGTAAAAGATTTAAAAAATAAATATATTTGTTGAACAAGT
193 TTTATTAATATTTT-AAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTATCGAACAA-T
* * * * *
19801376 TTAAATAGTCATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTCTTTTGTAAT
256 TCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCAT
* *** ** * * *
19801441 AAAACAATTGTTTCAATTCATATGAGCTTATTTGAAGTAA
321 AAAATAATTGTTTTTGTTCATACAAGTTTATTTAAAATAA
* * * * *
19801481 AATAAAACTAATTTATTAATATTTCAAAAATTAATGAGTATGAGAATTAAAAAA-AGAATCTGTT
1 AATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATA-AATATGTT
* * * *
19801545 TATCGAACAAGTTCAAATAGTTATGACTATCTAAACAATTATCTATTTCTAAA-TATTATGACGT
65 TACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTC-AAATTATTATGACCT
* ** * * * * *
19801609 TTTCTTTTGTTTTAAAACAATTGGTTCTATTTATGCAAGCTTATTTAGAATAAAATAATA-TAAA
129 TTTGTTTTGTCATAAAACAATTGTTTTTATTCATACAAGCTTATTCAGAATAAAATAATACT-AA
* * *
19801673 TTTATTAATATTTCAAAAATTAATAAGTAAAA-ATTTAAAAAATAAATCTGTTT-TCTTAACTCA
193 TTTATTAATATTT-TAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTATC-GAAC-AA
* * *
19801736 TTTAAATAGTTATAACTATTTGAACAATTATCTATTTCAAATCATTATGACTTTTTATTTTGTCA
255 TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCA
* * * **
19801801 TAAATTAATTATTTCTGTTCATACAAGTTTATTTGTAATAA
320 TAAAATAATTGTTTTTGTTCATACAAGTTTATTTAAAATAA
* * ** * *
19801842 AATAATATTAATTTATTAAAATTTCAAATGTTAATAAGTAAAAGATTTAAAAAATAAATTTGTTT
1 AATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTT
** * * * * * * *
19801907 ACC-AAGTGAGTTCAACTAGTTATGATTATTTGAACAGTTATTTATTTCAAATCATTATAAACTT
66 ACCGAA-CAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTATTATGACCTT
* * * * *
19801971 TTGTTTTGTCATAAAACATTTGTTTTTGTACTCATACAAGTTTATTCAAAATAAAATAATATTAA
130 TTGTTTTGTCATAAAACAATTG-TTTT-TATTCATACAAGCTTATTCAGAATAAAATAATACTAA
** * ** * * * * *
19802036 TTTATTAATATAATAAAATTAATGAATTGGAA-ACTT-AAAAATTAGTTTGTTTATCGAATAAGT
193 TTTATTAATATTTTAAAATTAAT-AAGTAAAAGATTTAAAAAATAAATCTGTTTATCGAACAA-T
* * * * * * * ** * * * *
19802099 TCAAAAAATCATGTCCATTTAAACTATTATCTATTTCAAATTGTTATGACATTTTGTTTTATCGT
256 TCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCAT
* * ** *
19802164 AAAATAATTATTTTTATTCATACAAAATTATTCAAAATAA
321 AAAATAATTGTTTTTGTTCATACAAGTTTATTTAAAATAA
* * ** * *
19802204 AATAATATTAATTTATTAATATTTCTAAAA-T--TAA-T--GAGATTTAAAATCTAACTCTGTTT
1 AATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTT
* * * * * * * * *
19802263 ACTAGATC-AGTTCAAATTGTTATAACTATTTGAACAACTATCTATCTCAGATTGTTATGATC-T
66 AC-CGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTATTATGACCTT
* * * * * * * * **
19802326 TTATTTTATCATAAAACAATTGTTTCTATTCATACAAACTTATTTAGAGTAAAATATTGCTAAAC
130 TTGTTTTGTCATAAAACAATTGTTTTTATTCATACAAGCTTATTCAGAATAAAATAATACTAATT
* * * * *
19802391 TAATAAGATTCTAAAATTAATAAGTAATAGATTTTAAAAAAT---TGTGTTTA-CTGAACCAATT
195 TATTAATATTTTAAAATTAATAAGTAAAAGA-TTTAAAAAATAAATCTGTTTATC-GAA-CAATT
* * * * * * *
19802452 CAAATAGTTAAGACTATTAGAACAATTATTTATTTCAAATCATTTTGACTTTTTGTTTAGTCATA
257 CAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCATA
* * * ** * *
19802517 AAATAATTGTTTTAGTTCATAAAAGCTTATCCAAAAGAG
322 AAATAATTGTTTTTGTTCATACAAGTTTATTTAAAATAA
* * * *
19802556 AATAATACTACTTTATTATTATTTCAAAAGTTAATATGTAAGAGATTTAAAAAATAAATCA-GTT
1 AATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAAT-ATGTT
* * * * * * * *
19802620 TACTGAATAAGTTCAAATACTTACG-GTCATTTGAACAACTATCTATTTCAAATTGTTATTACCT
65 TACCGAACAAGTTCAAATAGTTATGACT-ATTTGAACAATTATCTATTTCAAATTATTATGACCT
* * * *
19802684 TTTGTTTTGTCATAAGACAATTATTTTTCA-ACATACAAGTTTATTC-GAAATAAAATAATACTA
129 TTTGTTTTGTCATAAAACAATTGTTTTT-ATTCATACAAGCTTATTCAG-AATAAAATAATACTA
* * ** * *
19802747 ATCTACTAATTATTCAAAAATTAACAAG----AGATTTAAAAAATAAATCTGTTTATCAAACTAA
192 ATTTATTAA-TATTTTAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTATCGAAC-AA
* * ** * * * * *
19802808 TTTAAATAGTT-TGACTAGTTGAACAATTATCTATTTCAAATTGTTAT-AACTTTTGTTCTATAA
255 TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCA
* * * * *
19802871 TAAAACAATTATTTTTGTTTATACAAATTTATTCATAAA-AA
320 TAAAATAATTGTTTTTGTTCATACAAGTTTATTTA-AAATAA
* * * *
19802912 AATAATACTAATTTAGTAATA-TT-ATAAAATTAATAACTAAGAGATTTAAAAATTAAATCTGTT
1 AATAATACTAATTTATTAATATTTCA-AAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTT
*** * * * *
19802975 TGTTGAACCAA-TTCAAACAGTTAAGACTATATGAACAATTATTTATTTCAAATTATTATGACCT
65 TACCGAA-CAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTATTATGACCT
* * * * * * *
19803039 TTTATTTTGTCATAAAACAATT-ATTTCAGCTCATACAAGCTTATTCAGAATAGAGTAAAACTAA
129 TTTGTTTTGTCATAAAACAATTGTTTTTA-TTCATACAAGCTTATTCAGAATAAAATAATACTAA
* * * * * * * *
19803103 TTTATTAATATTTCAAAA--AATTA-TAAGAGATTTAGAAAATAATTCTATTTACCGAACCAGTT
193 TTTATTAATATTTTAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTATCGAA-CAATT
* * * *
19803165 CAAATAATTATAACTATTTGAACAATTATCTATTTCAAATCATTATTACTTTTTATTTTGTCATA
257 CAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCATA
* * * ** * *
19803230 AAATAATTGTTTTTATTAATATAAGTTTGCTCAATATAA
322 AAATAATTGTTTTTGTTCATACAAGTTTATTTAAAATAA
* *
19803269 AATAATA-TGAATTTATTAATATTT-AGAAAATTAATTAGTAAGAGACTTAAAAAATAAA-ATTG
1 AATAATACT-AATTTATTAATATTTCA-AAAATTAATAAGTAAGAGATTTAAAAAATAAATA-TG
* * * * * * * * **
19803331 TTTACCAAACCATTTCAAATAGTTTTGACTATTTGAATAATTATCTATTTTAAATCATTATAATA
63 TTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTATTATGACC
* * * * * * * ** * *
19803396 TTTTATTTTATCATCAAACAATTGATTCTGTTCATACTATTTTATTCAAAATAAAATAATATTAA
128 TTTTGTTTTGTCATAAAACAATTGTTTTTATTCATACAAGCTTATTCAGAATAAAATAATACTAA
* * *
19803461 TGTAATAATATTTCAAAACTTAATAA
193 TTTATTAATATTTTAAAA-TTAATAA
19803487 CCAAAAAAAC
Statistics
Matches: 1855, Mismatches: 429, Indels: 158
0.76 0.18 0.06
Matches are distributed among these distances:
349 3 0.00
350 2 0.00
351 154 0.08
352 126 0.07
353 52 0.03
354 20 0.01
355 206 0.11
356 164 0.09
357 98 0.05
358 230 0.12
359 61 0.03
360 75 0.04
361 246 0.13
362 361 0.19
363 53 0.03
364 4 0.00
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (360 bp):
AATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTT
ACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTATTATGACCTTT
TGTTTTGTCATAAAACAATTGTTTTTATTCATACAAGCTTATTCAGAATAAAATAATACTAATTT
ATTAATATTTTAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTATCGAACAATTCAAA
TAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCATAAAAT
AATTGTTTTTGTTCATACAAGTTTATTTAAAATAA
Found at i:19803478 original size:713 final size:712
Alignment explanation
Indices: 19800768--19803483 Score: 2299
Period size: 713 Copynumber: 3.8 Consensus size: 712
19800758 ATATTATTTT
* * * *
19800768 AATAATAGTAATTTAATAATAGTTCA-AAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTT
1 AATAATACTAATTTATTAATAGTT-ATAAAATTAATAAGTAAGAGATTTAAAAATTAAATCTGTT
* * * * * * * *
19800832 TATCAAATCAGTTCAAATGGTTAAGACCATGA-GAACAATTATTTATTTCAAATCATTTTAACCT
65 TATCGAATCAATTCAAATAGTTAAGACTAT-ATGAACAATTATCTATTTCAAATTATTATGACCT
* * * * * *
19800896 TTTATTTAGTTATAAAACAATTGTTTC-AGTTCATACAAGTTTATTCAAAATAAATTAATATTAA
129 TTTATTTTGTCATAAAACAATTGTTTCTA-TTCATACAAGCTTATTCAGAATAAAATAATACTAA
* * ** *
19800960 TTTATTAATATT-AAAAA--A-AAGAGATTTAAAAAAATAAATATGTTTACCAAATAAGTTCATA
193 TTTATTAATATTCAAAAATTATAAGAGATTT-AAAAAATAAATCTGTTTACCGAACCAGTTCAAA
* * * * * *
19801021 TAGTTATTACTATTTGAACAATTATCTATTT-AAAAC-TTATAACCTTTTAATTTGTCATAAAAC
257 TAGTTATAACTATTTGAACAATTATCTATTTCAAATCATTATTACTTTTTATTTTGTCATAAAAT
* * *
19801084 AATTGTTTTAGTTAATACAAGTTTATTTCAA-ATAAAATAATACAAATTTATTAATA--TAAAGA
322 AATTGTTTTAGTTAATACAAG-TT-TCTCAATATAAAATAATA-TAATTTATTAATATTTCAA-A
* *
19801146 TAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACCGAACAAATTCAAATCA-TTATGAC
383 -AATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACCAAACAAGTTCAAAT-AGTTATGAC
* * * * ** * * *
19801210 TATTTGAGCAATTATTTAATTCAACTTGTTATGACT-TTTTGTTTTATCATAAAATAATTGTTTT
446 TATTTGAACAATTATCTATTTCAAATCATTAT-AATATTTTGTTTTATCATAAAACAATTGATTT
* *** * * * ** * *
19801274 TATTCATACAAACATATTCAGATTAAAATAATTTTAATTTATTAATATTTTGATAATTAATAAGT
510 TGTTCATACAAGTTTATTCAAAATAAAATAATATTAATTTATTAATATTTCAAAAATTAACAAG-
* * * *
19801339 AAAAGATTTAAAAAATAAATATATTTGTTGAAC-AAGTTTAAATAGTCATGACTATTTGAATAAT
574 ---AGATTTAAAAAATAAATATGTTTATCGAACTAAGTTTAAATAGTCATGACTATTTGAACAAT
** * * * * ** ** **
19801403 TATCTATTTCAAATCATTATGACCTTTTCTTTTGTAATAAAACAATTGTTTCAATTCATATGAGC
636 TATCTATTTCAAATTGTTAT-AACTTTTGTTTTATAATAAAACAATTATTTTTATTCATACAAAA
*
19801468 TTATT--TGAAGTAA
700 TTATTCAT-AA-AAA
* * * * * *
19801481 AATAAAACTAATTTATTAATATTTCA-AAAATTAATGAGTATGAGAATTAAAAA-AAGAATCTGT
1 AATAATACTAATTTATTAATAGTT-ATAAAATTAATAAGTAAGAGATTTAAAAATTA-AATCTGT
* * *
19801544 TTATCGAA-CAAGTTCAAATAGTTATGACTATCTAAACAATTATCTATTTCTAAA-TATTATGAC
64 TTATCGAATCAA-TTCAAATAGTTAAGACTATATGAACAATTATCTATTTC-AAATTATTATGAC
* * ** * * * *
19801607 GTTTTCTTTTGTTTTAAAACAATTGGTTCTATTTATGCAAGCTTATTTAGAATAAAATAATA-TA
127 CTTTTATTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTCAGAATAAAATAATACT-
* * **
19801671 AATTTATTAATATTTCAAAAATTAATAAGTAAAAATTTAAAAAATAAATCTGTTTTCTTAACTCA
191 AATTTATTAATA-TTCAAAAATT-ATAAG---AGATTTAAAAAATAAATCTGTTTACCGAAC-CA
* *
19801736 -TTTAAATAGTTATAACTATTTGAACAATTATCTATTTCAAATCATTATGACTTTTTATTTTGTC
250 GTTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAATCATTATTACTTTTTATTTTGTC
* * * * *** *
19801800 ATAAATTAATTATTTCT-GTTCATACAAGTTTATTTGTAATAAAATAATATTAATTTATTAAAAT
315 ATAAAATAATTGTTT-TAGTTAATACAAGTTTCTCAAT-ATAAAATAATA-TAATTTATTAATAT
** * *** *
19801864 TTCAAATGTTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTACCAAGTGAGTTCAACTAGTTA
377 TTCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACCAAACAAGTTCAAATAGTTA
* * * * *
19801929 TGATTATTTGAACAGTTATTTATTTCAAATCATTATAA-ACTTTTGTTTTGTCATAAAACATTTG
442 TGACTATTTGAACAATTATCTATTTCAAATCATTATAATA-TTTTGTTTTATCATAAAACAATTG
* *
19801993 TTTTTGTACTCATACAAGTTTATTCAAAATAAAATAATATTAATTTATTAATA--TAATAAAATT
506 ATTTTGT--TCATACAAGTTTATTCAAAATAAAATAATATTAATTTATTAATATTTCA-AAAATT
* * * * * * * * * * *
19802056 AATGAATTGGAAACTT-AAAAATTAGTTTGTTTATCGAA-TAAGTTCAAAAAATCATGTCCATTT
568 AA-CAA---GAGATTTAAAAAATAAATATGTTTATCGAACTAAGTTTAAATAGTCATGACTATTT
* * * ** *
19802119 AAACTATTATCTATTTCAAATTGTTATGACATTTTGTTTTATCGTAAAATAATTATTTTTATTCA
629 GAACAATTATCTATTTCAAATTGTTATAAC-TTTTGTTTTATAATAAAACAATTATTTTTATTCA
19802184 TACAAAATTATTCA-AAATAA
693 TACAAAATTATTCATAAA-AA
* * * *
19802204 AATAATATTAATTTATTAATATTTCTAAAA-T--TAA-T--GAGATTT-AAAATCTAACTCTGTT
1 AATAATACTAATTTATTAATAGTTATAAAATTAATAAGTAAGAGATTTAAAAAT-TAAATCTGTT
* * * * * * * * *
19802262 TA-CTAGATCAGTTCAAATTGTTATA-ACTATTTGAACAACTATCTATCTCAGATTGTTATGATC
65 TATCGA-ATCAATTCAAATAGTTA-AGACTATATGAACAATTATCTATTTCAAATTATTATGACC
* * * * * *
19802325 -TTTATTTTATCATAAAACAATTGTTTCTATTCATACAAACTTATTTAGAGTAAAATATTGCTAA
128 TTTTATTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTCAGAATAAAATAATACTAA
** * * * * * *
19802389 ACTAATAAGATTCTAAAATTAATAAGTAATAGATTTTAAAAAAT---TGTGTTTACTGAACCAAT
193 TTTATTAATATTCAAAAATT-ATAAG----AGA-TTTAAAAAATAAATCTGTTTACCGAACCAGT
* * * *
19802451 TCAAATAGTTA-AGACTATTAGAACAATTATTTATTTCAAATCATT-TTGACTTTTTGTTTAGTC
252 TCAAATAGTTATA-ACTATTTGAACAATTATCTATTTCAAATCATTATT-ACTTTTTATTTTGTC
* * * * * * *
19802514 ATAAAATAATTGTTTTAGTTCATAAAAGCTTATC-CAAAAGAGAATAATACTACTTTATTATTAT
315 ATAAAATAATTGTTTTAGTTAATACAAG-TT-TCTCAATATAAAATAATA-TAATTTATTAATAT
* * * ** * *
19802578 TTCAAAAGTTAATATGTAAGAGATTTAAAAAATAAATCA-GTTTACTGAATAAGTTCAAATACTT
377 TTCAAAAATTAATAAGTAAAAGATTTAAAAAATAAAT-ATGTTTACCAAACAAGTTCAAATAGTT
* * * ** * ** * *
19802642 ACG-GTCATTTGAACAACTATCTATTTCAAATTGTTATTACCTTTTGTTTTGTCATAAGACAATT
441 ATGACT-ATTTGAACAATTATCTATTTCAAATCATTATAATATTTTGTTTTATCATAAAACAATT
* * * * *
19802706 -ATTTT-TCAACATACAAGTTTATTCGAAATAAAATAATACTAATCTACTAAT-TATTCAAAAAT
505 GATTTTGT--TCATACAAGTTTATTCAAAATAAAATAATATTAATTTATTAATAT-TTCAAAAAT
* * * *
19802768 TAACAAGAGATTTAAAAAATAAATCTGTTTATCAAACTAA-TTTAAATAGT-TTGACTAGTTGAA
567 TAACAAGAGATTTAAAAAATAAATATGTTTATCGAACTAAGTTTAAATAGTCATGACTATTTGAA
* * *
19802831 CAATTATCTATTTCAAATTGTTATAACTTTTGTTCTATAATAAAACAATTATTTTTGTTTATACA
632 CAATTATCTATTTCAAATTGTTATAACTTTTGTTTTATAATAAAACAATTATTTTTATTCATACA
*
19802896 AATTTATTCATAAAAA
697 AAATTATTCATAAAAA
* *
19802912 AATAATACTAATTTAGTAATA-TTATAAAATTAATAACTAAGAGATTTAAAAATTAAATCTGTTT
1 AATAATACTAATTTATTAATAGTTATAAAATTAATAAGTAAGAGATTTAAAAATTAAATCTGTTT
* * * * *
19802976 GTTGAACCAATTCAAACAGTTAAGACTATATGAACAATTATTTATTTCAAATTATTATGACCTTT
66 ATCGAATCAATTCAAATAGTTAAGACTATATGAACAATTATCTATTTCAAATTATTATGACCTTT
* * * * *
19803041 TATTTTGTCATAAAACAATTATTTC-AGCTCATACAAGCTTATTCAGAATAGAGTAAAACTAATT
131 TATTTTGTCATAAAACAATTGTTTCTA-TTCATACAAGCTTATTCAGAATAAAATAATACTAATT
* * *
19803105 TATTAATATTTCAAAAAATTATAAGAGATTTAGAAAATAATTCTATTTACCGAACCAGTTCAAAT
195 TATTAATA-TTC-AAAAATTATAAGAGATTTAAAAAATAAATCTGTTTACCGAACCAGTTCAAAT
*
19803170 AATTATAACTATTTGAACAATTATCTATTTCAAATCATTATTACTTTTTATTTTGTCATAAAATA
258 AGTTATAACTATTTGAACAATTATCTATTTCAAATCATTATTACTTTTTATTTTGTCATAAAATA
*
19803235 ATTGTTTTTA-TTAATATAAGTTTGCTCAATATAAAATAATATGAATTTATTAATATTT-AGAAA
323 ATTG-TTTTAGTTAATACAAGTTT-CTCAATATAAAATAATAT-AATTTATTAATATTTCA-AAA
* * * * * *
19803298 ATTAATTAGTAAGAGACTTAAAAAATAAA-ATTGTTTACCAAACCATTTCAAATAGTTTTGACTA
384 ATTAATAAGTAAAAGATTTAAAAAATAAATA-TGTTTACCAAACAAGTTCAAATAGTTATGACTA
* * * * *
19803362 TTTGAATAATTATCTATTTTAAATCATTATAATATTTTATTTTATCATCAAACAATTGATTCTGT
448 TTTGAACAATTATCTATTTCAAATCATTATAATATTTTGTTTTATCATAAAACAATTGATTTTGT
* * * * *
19803427 TCATACTATTTTATTCAAAATAAAATAATATTAATGTAATAATATTTCAAAACTTAA
513 TCATACAAGTTTATTCAAAATAAAATAATATTAATTTATTAATATTTCAAAAATTAA
19803484 TAACCAAAAA
Statistics
Matches: 1590, Mismatches: 321, Indels: 184
0.76 0.15 0.09
Matches are distributed among these distances:
707 7 0.00
708 63 0.04
709 41 0.03
710 37 0.02
711 9 0.01
712 51 0.03
713 490 0.31
714 296 0.19
715 31 0.02
716 75 0.05
717 65 0.04
718 4 0.00
719 4 0.00
720 2 0.00
721 55 0.03
722 16 0.01
723 287 0.18
724 13 0.01
725 43 0.03
728 1 0.00
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (712 bp):
AATAATACTAATTTATTAATAGTTATAAAATTAATAAGTAAGAGATTTAAAAATTAAATCTGTTT
ATCGAATCAATTCAAATAGTTAAGACTATATGAACAATTATCTATTTCAAATTATTATGACCTTT
TATTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTCAGAATAAAATAATACTAATTT
ATTAATATTCAAAAATTATAAGAGATTTAAAAAATAAATCTGTTTACCGAACCAGTTCAAATAGT
TATAACTATTTGAACAATTATCTATTTCAAATCATTATTACTTTTTATTTTGTCATAAAATAATT
GTTTTAGTTAATACAAGTTTCTCAATATAAAATAATATAATTTATTAATATTTCAAAAATTAATA
AGTAAAAGATTTAAAAAATAAATATGTTTACCAAACAAGTTCAAATAGTTATGACTATTTGAACA
ATTATCTATTTCAAATCATTATAATATTTTGTTTTATCATAAAACAATTGATTTTGTTCATACAA
GTTTATTCAAAATAAAATAATATTAATTTATTAATATTTCAAAAATTAACAAGAGATTTAAAAAA
TAAATATGTTTATCGAACTAAGTTTAAATAGTCATGACTATTTGAACAATTATCTATTTCAAATT
GTTATAACTTTTGTTTTATAATAAAACAATTATTTTTATTCATACAAAATTATTCATAAAAA
Found at i:19805129 original size:181 final size:178
Alignment explanation
Indices: 19804821--19805423 Score: 625
Period size: 179 Copynumber: 3.4 Consensus size: 178
19804811 GTTTTTCTTG
* * ***
19804821 ATACAAGCTTATTCGAATTAAAATAATATAAATTTATTAATATTTTGTCAATTAATAAGTAAAAG
1 ATACAAGCTTATTCTAAATAAAATAATATAAATTTATTAATATTTTAAAAATTAATAAGT-AAAG
* * * *
19804886 ATTTGAAAATAAAT-AT--GTTTACCAACCAAGTTCAAATAATCATAACTATTTGAATAATTATC
65 A-TT-AAAA-AAATAATCAGTTTACCAA-CAAGTTCAAATAGTTATGACTATTTGAAAAATTATC
* * *
19804948 TATTTCAAATCGTTATGACCTTTTGTTCAT-T-ATAAAACAATTGTAT-TAGTTC
126 TATTTCAAATCGTTATGACCTTTTATT-TTGTCATAAAACAATTGTTTCTA-TTC
* * * * **
19805000 ATATAGGCTTATTCTAAATAAAATAATACT-AATTTATTAACATTTTGAAAATTAACGAGTAAGA
1 ATACAAGCTTATTCTAAATAAAATAATA-TAAATTTATTAATATTTTAAAAATTAATAAGTAA-A
* * *
19805064 GATATAAAAAAATGAATCAGTTTACCGAATAAGTTCAATTAGTTATGACTATTTGAACAATTATC
64 GAT-TAAAAAAAT-AATCAGTTTACC-AACAAGTTCAAATAGTTATGACTATTTGAAAAATTATC
* *
19805129 TATTTCAAATCATTATGACCTTTTATTTTGTCATAAAATAATTGTTTCTATTC
126 TATTTCAAATCGTTATGACCTTTTATTTTGTCATAAAACAATTGTTTCTATTC
* *
19805182 ATACAAGCTTATTCTAAATAAAATAAT-TAAATTTATTAATATTTAAAAAATTAATAAGTAAAAA
1 ATACAAGCTTATTCTAAATAAAATAATATAAATTTATTAATATTTTAAAAATTAATAAGTAAAGA
* *** * * *
19805246 TTAAAAAAATAAATCTATTTTTTTAAACCA-TTTAAATAGTTATGACTATTTTAAAAATTATCTA
66 TTAAAAAAAT-AATC-A-GTTTACCAACAAGTTCAAATAGTTATGACTATTTGAAAAATTATCTA
* * * * *
19805310 TTTCAATTAGTTATAACCTTTTATTTTGTGATAAACCAATTGTTTCTATTC
128 TTTCAAATCGTTATGACCTTTTATTTTGTCATAAAACAATTGTTTCTATTC
* *
19805361 ATACAAGCTTATT-TGAGATAAAATAATACT-AATTTATTAATATTCTAAAAATTAATAAGTAAA
1 ATACAAGCTTATTCT-AAATAAAATAATA-TAAATTTATTAATATTTTAAAAATTAATAAGTAAA
19805424 ATATTTTTTA
Statistics
Matches: 358, Mismatches: 49, Indels: 33
0.81 0.11 0.08
Matches are distributed among these distances:
177 4 0.01
178 8 0.02
179 166 0.46
180 41 0.11
181 94 0.26
182 43 0.12
183 2 0.01
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.40
Consensus pattern (178 bp):
ATACAAGCTTATTCTAAATAAAATAATATAAATTTATTAATATTTTAAAAATTAATAAGTAAAGA
TTAAAAAAATAATCAGTTTACCAACAAGTTCAAATAGTTATGACTATTTGAAAAATTATCTATTT
CAAATCGTTATGACCTTTTATTTTGTCATAAAACAATTGTTTCTATTC
Found at i:19806568 original size:95 final size:96
Alignment explanation
Indices: 19806435--19806610 Score: 230
Period size: 95 Copynumber: 1.8 Consensus size: 96
19806425 TATATGAATT
* * * * *
19806435 GAAATAATTGTTTTATGACTAAACAAAAGATCAAAACGATTTAATATAGACAATTGTTCTAATAG
1 GAAACAATTGTTTTATAACTAAACAAAAGATCAAAACGATTTAAGATAGACAATTATTCAAATAG
*
19806500 TCTTAACAATTCGAATAAATTTGTATGAAAA
66 TCATAACAATTCGAATAAATTTGTATGAAAA
* * *
19806531 GAAACAATTGTTTTATAAC-AAA-ATAAAGATCATAACGATTTGAGATAGATAATTATTCAAATA
1 GAAACAATTGTTTTATAACTAAACA-AAAGATCAAAACGATTTAAGATAGACAATTATTCAAATA
* *
19806594 GTCATAACTATTTGAAT
65 GTCATAACAATTCGAAT
19806611 TGTTTTGGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
94 1 0.01
95 50 0.74
96 17 0.25
ACGTcount: A:0.46, C:0.09, G:0.11, T:0.34
Consensus pattern (96 bp):
GAAACAATTGTTTTATAACTAAACAAAAGATCAAAACGATTTAAGATAGACAATTATTCAAATAG
TCATAACAATTCGAATAAATTTGTATGAAAA
Found at i:19806865 original size:181 final size:176
Alignment explanation
Indices: 19806509--19807107 Score: 582
Period size: 181 Copynumber: 3.4 Consensus size: 176
19806499 GTCTTAACAA
* * * * *
19806509 TTCGAATAAATTTGTATGAAAAGAAACAATTGTTTTATAACAAAATAAAGATCATAACGATTTGA
1 TTCGAATAAATTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAATCATAACTATTTGA
* * * * * * *
19806574 GATAGATAATTATTCAAATAGTCATAACTATTTGAATTGTTTTGGA-AAACAGATTTAGTTTAT-
66 AATA-ATAATTATTCAAAT-GACATAACTATTTGAATT-TGTTCGATAAATAGATTTATTTTTTA
* *
19806637 AA-ATCT-CTTATTAATTTTTAAAATATTAACAAATAAATATTATTTTAT
128 AATATCTACTTATTAATTTTTAGAATATTAATAAAT-AATATTATTTTAT
* * * *
19806685 TTTGAATAATTTTGCATGAATAGAAACAATTGTTTTATGACAAAACAAAAAGTCATAACAATTTG
1 TTCGAATAAATTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAA-TCATAACTATTTG
* * *
19806750 AAATGAATAATTCTTCAAATGGAAATGACTATTTGAATTTGTTCGATAAATAGATTTATTTTTTA
65 AAAT-AATAATTATTCAAAT-GACATAACTATTTGAATTTGTTCGATAAATAGATTTATTTTTTA
*
19806815 AATATCCTACCTATTAATTTTTAGAATATTAATAAATTAATATTATTTTAT
128 AATAT-CTACTTATTAATTTTTAGAATATTAATAAA-TAATATTATTTTAT
* * * * * *
19806866 TTCAAATAAAATTGTATGAATAAAAACAATTATTTTATGACAAAACAAAATATCGTAACTATTTA
1 TTCGAATAAATTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAA-ATCATAACTATTTG
* * * * * *
19806931 AAATAAACAATTGTTCAACCT-ATCATAACTATTTGAACTTGCTCGATAAATAGATTTATTTATT
65 AAAT-AATAATTATTCAA-ATGA-CATAACTATTTGAATTTGTTCGATAAATAGATTTATTTTTT
* * * * * *
19806995 AAATCTTTTACTTATTAATTCTTGGAATATGAAT-AA-ACTATTATTTTAT
127 AAAT-ATCTACTTATTAATTTTTAGAATATTAATAAATAATATTATTTTAT
**** * * * *
19807044 TTCGAATATGCATGTATGAACAGAAACAATTGGTTTATGACAAAATAAAAGGTCATAACTATTT
1 TTCGAATAAATTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAA-ATCATAACTATTT
19807108 AGAATAAATA
Statistics
Matches: 350, Mismatches: 61, Indels: 22
0.81 0.14 0.05
Matches are distributed among these distances:
176 49 0.14
177 57 0.16
178 66 0.19
179 2 0.01
180 5 0.01
181 167 0.48
182 4 0.01
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.39
Consensus pattern (176 bp):
TTCGAATAAATTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAATCATAACTATTTGA
AATAATAATTATTCAAATGACATAACTATTTGAATTTGTTCGATAAATAGATTTATTTTTTAAAT
ATCTACTTATTAATTTTTAGAATATTAATAAATAATATTATTTTAT
Found at i:19807603 original size:181 final size:175
Alignment explanation
Indices: 19807171--19807903 Score: 588
Period size: 181 Copynumber: 4.1 Consensus size: 175
19807161 AATAGCCTTA
** * **
19807171 ACTATTTGAAC-TAGTTTGGTAAACACATTTATTTTTTAAATCTCTTACTTATTAATTTTTGGAA
1 ACTATTTGAACTTA-TTCAGTAAACAGATTTATTTTTTAAATCTC-TACTTATTAATTTTTAAAA
* * * * * *
19807235 TATTATTAAATTAATATTATTTTAATCCGAATAAGCCTGTATGAA-AGGAAACAATTATTTTATG
64 TATTAATAAATTAGTATTATTTTATTCTGAATAA-CTTGTATGAACA-GAAACAATTGTTTTATG
* * * * *
19807299 ATAAAATAAAGATCTCAACGATTTGAGATAGATAATTATTCAAATAGTCAT
127 ACAAAATAAAGATATC-ACGATTTGAAATAGATAATTGTTTAAAT-GTCAT
* * * * * *
19807350 A--ACTTGAA-TTGTTTCAGTAAATAGATTTAGTTTTTAAA--TCT-CTTCTTAA-TTTCAAAAT
1 ACTATTTGAACTT-ATTCAGTAAACAGATTTATTTTTTAAATCTCTACTTATTAATTTTTAAAAT
* * *
19807408 ATTAATAGATTAGTATTATTTTATTCTGAATAATTTTTCATGAACAGAAACAATTGTTTTATGAC
65 ATTAATAAATTAGTATTATTTTATTCTGAATAACTTGT-ATGAACAGAAACAATTGTTTTATGAC
* * *
19807473 AAAATAGAAGGTAATCACGATTTGAAATAGATAAATGTTTAAATGGACAT
129 AAAATA-AAGAT-ATCACGATTTGAAATAGATAATTGTTTAAAT-GTCAT
* * * *
19807523 CACTATTTCAACTTATTCGGTAAGCAGATTTATTTTTTAAATCTTCTACCTATTAATTTTTAAAA
1 -ACTATTTGAACTTATTCAGTAAACAGATTTATTTTTTAAATC-TCTACTTATTAATTTTTAAAA
* * * *
19807588 TATTAATAAATTAGTATTATTTTATTCTAAATAAACTTGTGTGAATAGAAACAATTGCTTTATGA
64 TATTAATAAATTAGTATTATTTTATTCTGAAT-AACTTGTATGAACAGAAACAATTGTTTTATGA
* * * * * *
19807653 CAAAACAAAAGATCATGACTATTTAAAATAGATAATTGGTCTAACA-GTTAT
128 CAAAA-TAAAGAT-ATCACGATTTGAAATAGATAATT-GTTTAA-ATGTCAT
* * * * **
19807704 AATTATTTGAACTTATTCAATAAATAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGGAA
1 -ACTATTTGAACTTATTCAGTAAACAGATTTATTTTTTAAATC-TCTACTTATTAATTTTTAAAA
* * * * * * *
19807769 TATTAATAAAATATTATTATTTTATTTTGAATACACTTGTATGAACAAAAACCATTGGTTTGTGA
64 TATTAATAAATTAGTATTATTTTATTCTGAATA-ACTTGTATGAACAGAAACAATTGTTTTATGA
* * * ** * * *
19807834 CAAAACAAAAGGTCATAATTATTTGAAATAAATAATTATTTAAATAGTGAT
128 CAAAA-TAAAGAT-ATCACGATTTGAAATAGATAATTGTTTAAAT-GTCAT
19807885 AACTATTTGAA-TGTATTCA
1 -ACTATTTGAACT-TATTCA
19807904 TATTAGTTTA
Statistics
Matches: 445, Mismatches: 86, Indels: 44
0.77 0.15 0.08
Matches are distributed among these distances:
171 2 0.00
172 62 0.14
173 40 0.09
174 4 0.01
175 2 0.00
176 27 0.06
177 30 0.07
179 5 0.01
180 12 0.03
181 249 0.56
182 11 0.02
183 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (175 bp):
ACTATTTGAACTTATTCAGTAAACAGATTTATTTTTTAAATCTCTACTTATTAATTTTTAAAATA
TTAATAAATTAGTATTATTTTATTCTGAATAACTTGTATGAACAGAAACAATTGTTTTATGACAA
AATAAAGATATCACGATTTGAAATAGATAATTGTTTAAATGTCAT
Found at i:19807870 original size:17 final size:16
Alignment explanation
Indices: 19807848--19807879 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
19807838 ACAAAAGGTC
19807848 ATAATTATTTGAAATAA
1 ATAATTATTT-AAATAA
19807865 ATAATTATTTAAATA
1 ATAATTATTTAAATA
19807880 GTGATAACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (16 bp):
ATAATTATTTAAATAA
Found at i:19808722 original size:180 final size:181
Alignment explanation
Indices: 19808187--19811157 Score: 503
Period size: 181 Copynumber: 16.5 Consensus size: 181
19808177 CTTATTGGAT
* * *** * *
19808187 TAAAATAATATTAATTTATTAATATTTTGACAATTAATAAGTAAAAGATTTAAAAAATAAATAC-
1 TAAAATAATACTAATTTATTAAAATTCCAAAAATTAATAAGCAAAAGATTTAAAAAATAAAT-CT
* * * * ** * * * * * * *
19808251 GTATACCGA-ACAATTTCAAATAGTCATGACCATTTGAATAATTATCCATTTCAAATGATTGTAA
65 GTTTACCTAGTCAA-TTCAAATAGTTATGAATATTTAAACAATTATCTATTTCAAATCAATATGA
** * * ** * * * * *
19808315 CCTTTTGTTTTGTAATAAAACAATTGTTTCA-ATTAATATAAGCTTATTTGAAA
129 CCAATTATTCTGCCATAAACCAGTTGTTT-ATATTCATACAAGCTTATTTCAAA
* * * * * * ** * *
19808368 TAAAATAATACTAATTTATTAATATTTCAAAAATTAGTGAGTAAGAGAACTAAAACAATGAATTT
1 TAAAATAATACTAATTTATTAAAATTCCAAAAATTAATAAGCAAAAGATTTAAAA-AATAAATCT
** * * * * *
19808433 GTTTACC-A-AAAAGTTCAACTAGTTATGACTATCTAAAACAATTATTTATTTCAGAA-CATTAT
65 GTTTACCTAGTCAA-TTCAAATAGTTATGAATAT-TTAAACAATTATCTATTTCA-AATCAATAT
* ** * * * ** * * * *
19808495 GGCCTTTTATTTTGTCAAAAAATAATTGGTTCTATTCATCCAAGCTTATTTCAAA
127 GACCAATTATTCTGCCATAAACCAGTTGTTTATATTCATACAAGCTTATTTCAAA
* * * * *
19808550 TAAAATAATA-TAAATTTATTGATATTCCAAAAATTAATAAGCAAAA-TTTTGAAAAATAAATTT
1 TAAAATAATACT-AATTTATTAAAATTCCAAAAATTAATAAGCAAAAGATTTAAAAAATAAATCT
* * *
19808613 GTTT-TCTGAG-CACATTCAAATAGTTATGAATATTTGAACAATTATCTATTTCAAATCAGTATG
65 GTTTACCT-AGTCA-ATTCAAATAGTTATGAATATTTAAACAATTATCTATTTCAAATCAATATG
*
19808676 ACCAATTATTCTGCCATAAACCAGTTGTTTATATTCATACAAGCTTATTTGAAA
128 ACCAATTATTCTGCCATAAACCAGTTGTTTATATTCATACAAGCTTATTTCAAA
* **
19808730 TGAAATAATACTAATTTATTAAAATTTTAAAAATTAATAAGCAAAAGATTTAAAAAATAAATCTG
1 TAAAATAATACTAATTTATTAAAATTCCAAAAATTAATAAGCAAAAGATTTAAAAAATAAATCTG
* * * * * * **
19808795 TTTACCTAGTGAGTTCAATTAGTTATGACTATTTAAATAATTATTTATTTCAAATCAATATGATT
66 TTTACCTAGTCAATTCAAATAGTTATGAATATTTAAACAATTATCTATTTCAAATCAATATGACC
** * * ** * * * * ** *
19808860 TTTTGTTTTTTCATAAAGCTGTTGTTTCTATTCATA-AAGGTTTATGTGGAAT
131 AATTATTCTGCCATAAACCAGTTGTTTATATTCATACAA-GCTTAT-TTCAAA
** ** ** * * * *
19808912 TAGTATTCTAAAAATTAATAAGTTAGAGATT-TAAAAATTAAATCTATTTACCGAATAAG-TTCA
1 TAAAATAATACTAATT--T-A-TTA-AAATTCCAAAAATT-AA--TA---AGC-AA-AAGATTTA
* * ** * * **
19808975 AATAGTCATGTCTGTTTGAACTA-TCATCTATTTCAAATCGTTATGAA-ATTT----TGTT-T-T
53 AAAAAT-AAATCTGTTT-ACCTAGTCA---A-TTCAAATAGTTATGAATATTTAAACAATTATCT
** * * * **
19809032 ATCGC-AA--AATAAT-ACCAATTA-T-T--CA-AAA-TAATTG---GTATTCATACAAAATTAT
112 ATTTCAAATCAAT-ATGACCAATTATTCTGCCATAAACCAGTTGTTTATATTCATACAAGCTTAT
19809084 TT-AGAA
176 TTCA-AA
* ** *** *
19809090 TAAAATAATACCAATTTATTACTATTTTGAAAATTAATAAG-----GATTTAAAAAATAAATGTG
1 TAAAATAATACTAATTTATTAAAATTCCAAAAATTAATAAGCAAAAGATTTAAAAAATAAATCTG
* * * * ** * * * *
19809150 TTT-GCTGAATCAATTCAAATAATTAAGCCTA-TGAGAACACTTATCTATTTCAAATCATTCTGA
66 TTTACCT-AGTCAATTCAAATAGTTATGAATATTTA-AACAATTATCTATTTCAAATCAATATGA
** * ** * * * *
19809213 CCTTTTATT-TGTCATAAAATAATTGTTTCA-GTTCATATATGCTTA-TTCAAAA
129 CCAATTATTCTGCCATAAACCAGTTGTTT-ATATTCATACAAGCTTATTTC-AAA
** * *
19809265 TAAAATAATACTAATTTATTAGCATTCAAAAAATTAATAAGCAAGAA-ATTAAAAAAAATAAATC
1 TAAAATAATACTAATTTATTAAAATTCCAAAAATTAATAAGCAA-AAGATT-TAAAAAATAAATC
* * ** * * ***
19809329 TGTTTA--TTGAACAAGTTCATTTAGTTAT-AACTATTTGAACAATTATCTATTTAAAATTGTTA
64 TGTTTACCTAG-TCAA-TTCAAATAGTTATGAA-TATTTAAACAATTATCTATTTCAAATCAATA
** * ** * * * * * * *
19809391 TGACCTTTTATTTTTATCGTAAAGCAATTGTTTCA-GTGCATAAAAGCTTA-TCCAAAA
126 TGACCAATTA-TTCTGCCATAAACCAGTTGTTT-ATATTCATACAAGCTTATTTC-AAA
* * * * * ** *
19809448 TAAAATAATA-TTACTTATTAATATTGCAAAAATTCATAAGTTAGAGATTTAAAAAATAAAT-TA
1 TAAAATAATACTAATTTATTAAAATTCCAAAAATTAATAAGCAAAAGATTTAAAAAATAAATCT-
* * * * *** * * * *
19809511 GTTTA-TTGAATCAGTTCAAATAATTATGGCCAATTGAACAATTATTTATTTCAAATCGATATGA
65 GTTTACCT-AGTCAATTCAAATAGTTATGAATATTTAAACAATTATCTATTTCAAATCAATATGA
* ** * * * ** * * * * * *
19809575 ACTTTTGTTTTGTCATAAAATAATTGTTTTTCA-TCATATAAGCCTATTTGATA
129 CCAATTATTCTGCCATAAACCAGTTGTTTAT-ATTCATACAAGCTTATTTCAAA
* ** * * * ** * *
19809628 TAAAATAATAGTAATTTGCTAATATTTCAAAAATTAATAAGTAGGAGATATAAAAAATAAATCTA
1 TAAAATAATACTAATTTATTAAAATTCCAAAAATTAATAAGCAAAAGATTTAAAAAATAAATCTG
* * ** * * * *** *
19809693 TTTATCAAACCAGTTCAAATAGTTATGAATATTTGAACAATTATATATTTCAAATTGTTATAACC
66 TTTACCTAGTCAATTCAAATAGTTATGAATATTTAAACAATTATCTATTTCAAATCAATATGACC
** * * * * * * * * * *
19809758 TTTTGTTATGTCTTAAAACAATTATTTCTATTTATACAAGTTTA-TTCAGAA
131 AATTATTCTGCCATAAACCAGTTGTTTATATTCATACAAGCTTATTTCA-AA
* ** * * * * * *
19809809 TAAAATAATACTAATGTAACAATATTCTAGAAATTAATAA-CTAAGAGATTTGAAAAATAAATTT
1 TAAAATAATACTAATTTATTAAAATTCCAAAAATTAATAAGC-AAAAGATTTAAAAAATAAATCT
* ** ** * * ** * * * * * *
19809873 ATTT-GTTAAACCAGTTCAAATAGTTAGGGCTATATGAACAATTCTTTATTTCAAATTATTATGA
65 GTTTACCT-AGTCAATTCAAATAGTTATGAATATTTAAACAATTATCTATTTCAAATCAATATGA
** * * * ** * * ** *
19809937 CCTTTTGTTTTGTCATAAAATAATT-TTT-TCAGTTCTTAGTTA-CTTA-CTCAAAA
129 CCAATTATTCTGCCATAAACCAGTTGTTTAT-A-TTCATA-CAAGCTTATTTC-AAA
* * * * * * *
19809990 TAAAATCAA-ACAAATTTATTAACATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAACTAT
1 TAAAAT-AATACTAATTTATTAAAATTCCAAAAATTAATAAGCAAAAGATTTAAAAAATAAATCT
* ** * ** * * * * *
19810054 ATTTGTCGAACCAGTTCAAATAATTATGACTATTTAAACAATTATCTATTTCAAATC-GTCATTA
65 GTTTACCTAGTCAATTCAAATAGTTATGAATATTTAAACAATTATCTATTTCAAATCAAT-ATGA
** * * * ** * * **
19810118 CCTTTTATTTTGTCATAAAACAAATGACTTT-T-TTCATATAAGTTTATTTGGAA
129 CCAATTATTCTGCCATAAACCAGTTG--TTTATATTCATACAAGCTTATTTCAAA
* * *** * * *
19810171 TAAAATAATATTAATTTATTAATATT-TTGAAA--ACTAAG-AAGAGATTTAAAAAATAAATCTA
1 TAAAATAATACTAATTTATTAAAATTCCAAAAATTAATAAGCAAAAGATTTAAAAAATAAATCTG
** * * * * * * *
19810232 TTTA-CTAAACCAGTTTAATTAATTAT-AACTATTTGAATAATTATTTATTTCAAATC-ATGATG
66 TTTACCT-AGTCAATTCAAATAGTTATGAA-TATTTAAACAATTATCTATTTCAAATCAAT-ATG
* * * ** ** * * * **
19810294 ACCATTTGTTTTATCATAAAAGAATTGTTTCTATTCATA-TAGTCTTATTTGGAA
128 ACCAATTATTCTGCCATAAACCAGTTGTTTATATTCATACAAG-CTTATTTCAAA
* * ** * ** * * *
19810348 TAAAGTAATACTAATTTATTAATATT-CTGAAATTAATAAGTAACGGATTTAAGAAATGAATTTG
1 TAAAATAATACTAATTTATTAAAATTCCAAAAATTAATAAGCAAAAGATTTAAAAAATAAATCTG
*** * * * * * * * *
19810412 TTCGTCTA-ACTAGTGCAAATAGTTATGATTGTTTAAATAATTATCTATTGCAAATCATTATGAC
66 TTTACCTAGTC-AATTCAAATAGTTATGAATATTTAAACAATTATCTATTTCAAATCAATATGAC
** * * ** * * * ***
19810476 CTTTTGTTTTATCACAAAACAGTTGTTTCTATTCATACAAGCTTATCGAAAA
130 CAATTATTCTGCCATAAACCAGTTGTTTATATTCATACAAGCTTATTTCAAA
* ** * * *
19810528 TAACATAATTGTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAA-AGAATCT
1 TAAAATAATACTAATTTATTAAAATTCCAAAAATTAATAAGCAAAAGATTTAAAAAATA-AATCT
* * * ** *
19810592 GTTTACCGA-ACAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCGCTATAA
65 GTTTACCTAGTCAA-TTCAAATAGTTATGAATATTTAAACAATTATCTATTTCAAATCAATATGA
* * * * ** * * * * * * * *
19810656 CCATTTGTTTTGTCATAAAATAATTTTTTCTATCCAAATAAGTTTATTTAAAA
129 CCAATTATTCTGCCATAAACCAGTTGTTTATATTCATACAAGCTTATTTCAAA
* * * * * *
19810709 CAAAATTATACAAATTTATTAATATT-CAGACAATTAATAAGTAAAAGA-TTAAAAATATAAATC
1 TAAAATAATACTAATTTATTAAAATTCCA-AAAATTAATAAGCAAAAGATTTAAAAA-ATAAATC
* * * * * * * **
19810772 TGTTTATCGAAT-AAGTTCAAATTGTTATGACTATTTAAACAATTATTTATTTTAAATCGTTATG
64 TGTTTACCTAGTCAA-TTCAAATAGTTATGAATATTTAAACAATTATCTATTTCAAATCAATATG
*** * * *** ** * * * * * * *
19810836 ACTTTTTGTTTTATTATAAAATAATTGTTTTTCTCCTTTCAAGCCTA-TTCAAA
128 ACCAATTATTCTGCCATAAACCAGTTGTTTATATTCATACAAGCTTATTTCAAA
* * * *** * * * *
19810889 TTAAAATAATATTAATTTATTAATATTTCATTTATTAATAAGTAAAAGATTTTAAAAATAATTAT
1 -TAAAATAATACTAATTTATTAAAATTCCAAAAATTAATAAGCAAAAGATTTAAAAAATAAATCT
* * ** * *
19810954 GTTTA-CT-GTACAAGTTCAAATAGTCAT-AACTATTTGAGTAATTATCTATTTAAAATCATTAT
65 GTTTACCTAGT-CAA-TTCAAATAGTTATGAA-TATTTAAACAATTATCTATTTCAAATCAATAT
** ** * * *
19811016 GACCTTTTATT-T-CATCATAAAATAATT-TTCT-TAGTTCATATAAACTTA-TTCGAAA
127 GACCAATTATTCTGC--CATAAACCAGTTGTT-TATA-TTCATACAAGCTTATTTC-AAA
* * * * * *
19811071 TAAAATAATACTAATTTATTAATATGT-CATAAATTAATTAGTAAGAGTTTTAAAAAATTAAA-C
1 TAAAATAATACTAATTTATTAAAAT-TCCAAAAATTAATAAGCAAAAGATTTAAAAAA-TAAATC
* *
19811134 TATTTACCTA-ACAAGTTCAAATAG
64 TGTTTACCTAGTCAA-TTCAAATAG
19811158 ATTTTTTTTA
Statistics
Matches: 2133, Mismatches: 513, Indels: 288
0.73 0.17 0.10
Matches are distributed among these distances:
157 12 0.01
158 2 0.00
159 2 0.00
160 1 0.00
161 11 0.01
162 9 0.00
163 1 0.00
164 4 0.00
165 2 0.00
166 1 0.00
167 8 0.00
168 3 0.00
170 2 0.00
171 5 0.00
172 6 0.00
173 5 0.00
174 12 0.01
175 51 0.02
176 7 0.00
177 136 0.06
178 17 0.01
179 23 0.01
180 325 0.15
181 1159 0.54
182 188 0.09
183 50 0.02
184 7 0.00
185 1 0.00
186 12 0.01
187 7 0.00
188 6 0.00
189 4 0.00
190 2 0.00
191 4 0.00
192 3 0.00
193 11 0.01
194 13 0.01
195 4 0.00
197 4 0.00
198 13 0.01
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (181 bp):
TAAAATAATACTAATTTATTAAAATTCCAAAAATTAATAAGCAAAAGATTTAAAAAATAAATCTG
TTTACCTAGTCAATTCAAATAGTTATGAATATTTAAACAATTATCTATTTCAAATCAATATGACC
AATTATTCTGCCATAAACCAGTTGTTTATATTCATACAAGCTTATTTCAAA
Found at i:19808894 original size:181 final size:180
Alignment explanation
Indices: 19808129--19808895 Score: 675
Period size: 181 Copynumber: 4.2 Consensus size: 180
19808119 CAACAAATTG
* * * ** * * *
19808129 TTATGACTTTTTGTTTTATCATAAAACAATTATTTCTGCTCATACAATCTTA-TTGGATTAAAAT
1 TTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGAAATAAAAT
* ** * * *
19808193 AATATTAATTTATTAATATTTTGACAATTAATAAGTAAAAGATTTAAAAAATAAATAC-GTATAC
66 AATACTAATTTATTAATATTTCAAAAATTAATAAGCAAAAGATTTAAAAAATAAAT-CTGTTTAC
* * * * * * * *
19808257 CGAACAATTTCAAATAGTCATGACCATTTGAATAATTATCCATTTCAAATGA
130 CTAA-AAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCA
* * * * * *
19808309 TTGTAACCTTTTGTTTTGTAATAAAACAATTGTTTCAATTAATATAAGCTTATTTGAAATAAAAT
1 TTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGAAATAAAAT
* * * * ** * *
19808374 AATACTAATTTATTAATATTTCAAAAATTAGTGAGTAAGAGAACTAAAACAATGAATTTGTTTAC
66 AATACTAATTTATTAATATTTCAAAAATTAATAAGCAAAAGATTTAAAA-AATAAATCTGTTTAC
* * * *
19808439 CAAAAAGTTCAACTAGTTATGACTATCTAAAACAATTATTTATTTCAGAA-CA
130 CTAAAAGTTCAAATAGTTATGACTAT-TTAAACAATTATCTATTTCA-AATCA
* * * * * * *
19808491 TTATGGCCTTTTATTTTGTCAAAAAATAATTGGTTCTATTCATCCAAGCTTATTTCAAATAAAAT
1 TTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGAAATAAAAT
* * * * * *
19808556 AATA-TAAATTTATTGATATTCCAAAAATTAATAAGCAAAA-TTTTGAAAAATAAATTTGTTT-T
66 AATACT-AATTTATTAATATTTCAAAAATTAATAAGCAAAAGATTTAAAAAATAAATCTGTTTAC
* * *
19808618 CTGAGCACA-TTCAAATAGTTATGAATATTTGAACAATTATCTATTTCAAATCA
130 CT-A--AAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCA
* ** * * * * * * *
19808671 GTATGACCAATTATTCTGCCATAAACCAGTTGTTTATATTCATACAAGCTTATTTGAAATGAAAT
1 TTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGAAATAAAAT
* *
19808736 AATACTAATTTATTAAAATTTTAAAAATTAATAAGCAAAAGATTTAAAAAATAAATCTGTTTACC
66 AATACTAATTTATTAATATTTCAAAAATTAATAAGCAAAAGATTTAAAAAATAAATCTGTTTACC
** * * *
19808801 TAGTGAGTTCAATTAGTTATGACTATTTAAATAATTATTTATTTCAAATCA
131 TA-AAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCA
* ** * * **
19808852 ATATGATTTTTTGTTTTTTCATAAAGCTGTTGTTTCTATTCATA
1 TTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATA
19808896 AAGGTTTATG
Statistics
Matches: 461, Mismatches: 112, Indels: 27
0.77 0.19 0.05
Matches are distributed among these distances:
179 3 0.01
180 157 0.34
181 181 0.39
182 118 0.26
183 2 0.00
ACGTcount: A:0.41, C:0.11, G:0.09, T:0.40
Consensus pattern (180 bp):
TTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGAAATAAAAT
AATACTAATTTATTAATATTTCAAAAATTAATAAGCAAAAGATTTAAAAAATAAATCTGTTTACC
TAAAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCA
Found at i:19809403 original size:181 final size:178
Alignment explanation
Indices: 19809088--19811157 Score: 1550
Period size: 181 Copynumber: 11.5 Consensus size: 178
19809078 AATTATTTAG
* * ** *
19809088 AATAAAATAATACCAATTTATTACTATTTTGAAAA-T--TAA-TAAG-GATTTAAAAAATAAATG
1 AATAAAATAATACTAATTTATTAATA-TTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATC
** * * * ** * * *
19809148 TGTTTGCTGAATCAA-TTCAAATAATTAAGCCTATGAGAACACTTATCTATTTCAAATCATTCTG
65 TGTTTATTGAA-CAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATG
*
19809212 ACCTTTTATTTGTCATAAAATAATTGTTTCAGTTCATATATGCTTATTCAA
129 ACCTTTTATTTGTCATAAAATAATTGTTTCA-TTCATATAAGCTTATTCAA
** * * *
19809263 AATAAAATAATACTAATTTATTAGCATTCAAAAAATTAATAAGCAAGAAATTAAAAAAAATAAAT
1 AATAAAATAATACTAATTTATTAATATTC-AAAAATTAATAAGTAAGAGATT-TAAAAAATAAAT
** * * *
19809328 CTGTTTATTGAACAAGTTCATTTAGTTATAACTATTTGAACAATTATCTATTTAAAATTGTTATG
64 CTGTTTATTGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATG
* * ** * * *
19809393 ACCTTTTATTTTTATCGTAAAGCAATTGTTTCAGTGCATAAAAGCTTATCCAA
129 ACCTTTTA--TTTGTCATAAAATAATTGTTTCA-TTCATATAAGCTTATTCAA
* * * *
19809446 AATAAAATAATA-TTACTTATTAATATTGCAAAAATTCATAAGTTAGAGATTTAAAAAATAAAT-
1 AATAAAATAATACTAATTTATTAATATT-CAAAAATTAATAAGTAAGAGATTTAAAAAATAAATC
* * * * * *
19809509 TAGTTTATTGAATC-AGTTCAAATAATTATGGCCAATTGAACAATTATTTATTTCAAATCGATAT
65 T-GTTTATTGAA-CAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTAT
* * * **
19809573 GAACTTTTGTTTTGTCATAAAATAATTGTTTTTCA-TCATATAAGCCTATTTGA
128 GACCTTTT-ATTTGTCATAAAATAATTG--TTTCATTCATATAAGCTTATTCAA
* * ** * *
19809626 TATAAAATAATAGTAATTTGCTAATATTTCAAAAATTAATAAGTAGGAGATATAAAAAATAAATC
1 AATAAAATAATACTAATTTATTAATA-TTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATC
* ** * * * * *
19809691 TATTTATCAAACCAGTTCAAATAGTTATGAATATTTGAACAATTATATATTTCAAATTGTTATAA
65 TGTTTATTGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGA
* * * * * * * *
19809756 CCTTTTGTTATGTCTTAAAACAATTATTTCTATTTATACAAGTTTATTCAG
130 CCTTTTATT-TGTCATAAAATAATTGTTTC-ATTCATATAAGCTTATTCAA
* ** * * * *
19809807 AATAAAATAATACTAATGTAACAATATTCTAGAAATTAATAACTAAGAGATTTGAAAAATAAATT
1 AATAAAATAATACTAATTTATTAATATTC-AAAAATTAATAAGTAAGAGATTTAAAAAATAAATC
* * * * * * * * * **
19809872 TATTTGTTAAACCAGTTCAAATAGTTAGGGCTATATGAACAATTCTTTATTTCAAATTATTATGA
65 TGTTTATTGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGA
* * * * *
19809937 CCTTTTGTTTTGTCATAAAATAATTTTTTCAGTTCTTAGTTA-CTTACTCAA
130 CCTTTT-ATTTGTCATAAAATAATTGTTTCA-TTCATA-TAAGCTTATTCAA
* * *
19809988 AATAAAATCAA-ACAAATTTATTAACATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAACT
1 AATAAAAT-AATACTAATTTATTAATA-TTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAAT
* * * * * * * * *
19810052 ATATTTGTCGAACCAGTTCAAATAATTATGACTATTTAAACAATTATCTATTTCAAATCGTCATT
64 CTGTTTATTGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATG
* * * * ***
19810117 ACCTTTTATTTTGTCATAAAACAAATGACTTT-TTTCATATAAGTTTATTTGG
129 ACCTTTTA-TTTGTCATAAAATAATTG--TTTCATTCATATAAGCTTATTCAA
* *** *
19810169 AATAAAATAATATTAATTTATTAATATTTTGAAA--ACTAAG-AAGAGATTTAAAAAATAAATCT
1 AATAAAATAATACTAATTTATTAATATTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCT
* * * * * * * * * * * *
19810231 ATTTACTAAACCAGTTTAATTAATTATAACTATTTGAATAATTATTTATTTCAAATCATGATGAC
66 GTTTATTGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGAC
* * ***
19810296 CATTTGT-TTTATCATAAAAGAATTGTTTCTATTCATAT-AGTCTTATTTGG
131 C-TTT-TATTTGTCATAAAATAATTGTTTC-ATTCATATAAG-CTTATTCAA
* ** * * *
19810346 AATAAAGTAATACTAATTTATTAATATTCTGAAATTAATAAGTAACG-GATTTAAGAAATGAATT
1 AATAAAATAATACTAATTTATTAATATTCAAAAATTAATAAGTAA-GAGATTTAAAAAATAAATC
** * * * * * * * *
19810410 TGTTCGTCT-AACTAGTGCAAATAGTTATGATTGTTTAAATAATTATCTATTGCAAATCATTATG
65 TGTTTAT-TGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATG
* * * * * *
19810474 ACCTTTTGTTTTATCACAAAACAGTTGTTTCTATTCATACAAGCTTA-TCGAA
129 ACCTTTT-ATTTGTCATAAAATAATTGTTTC-ATTCATATAAGCTTATTC-AA
* **
19810526 AATAACATAATTGTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAA-AGAAT
1 AATAAAATAATACTAATTTATTAATATT-CAAAAATTAATAAGTAAGAGATTTAAAAAATA-AAT
** * * *
19810590 CTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCGCTATA
64 CTGTTTATTGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATG
* * * * *
19810655 ACCATTTGT-TTTGTCATAAAATAATTTTTTCTATCCAAATAAGTTTATTTAA
129 ACC-TTT-TATTTGTCATAAAATAATTGTTTC-ATTCATATAAGCTTATTCAA
* * * * *
19810707 AACAAAATTATACAAATTTATTAATATTCAGACAATTAATAAGTAAAAGA-TTAAAAATATAAAT
1 AATAAAATAATACTAATTTATTAATATTCA-AAAATTAATAAGTAAGAGATTTAAAAA-ATAAAT
* * * * * *
19810771 CTGTTTATCGAATAAGTTCAAATTGTTATGACTATTTAAACAATTATTTATTTTAAATCGTTATG
64 CTGTTTATTGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATG
* * * * * * * *
19810836 ACTTTTTGTTTTATTATAAAATAATTGTTT-TTCTCCTTTCAAGCCTATTCAA
129 ACCTTTT-ATTTGTCATAAAATAATTGTTTCAT-TCATAT-AAGCTTATTCAA
* * *** * * * *
19810888 ATTAAAATAATATTAATTTATTAATATTTCATTTATTAATAAGTAAAAGATTTTAAAAATAATTA
1 AATAAAATAATACTAATTTATTAATA-TTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATC
* * * * ** * *
19810953 TGTTTACTGTACAAGTTCAAATAGTCATAACTATTTGAGTAATTATCTATTTAAAATCATTATGA
65 TGTTTATTGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGA
* * * *
19811018 CCTTTTATTTCATCATAAAATAATT-TTCTTAGTTCATATAAACTTATTCGA
130 CCTTTTATTT-GTCATAAAATAATTGTT-TCA-TTCATATAAGCTTATTCAA
* * *
19811069 AATAAAATAATACTAATTTATTAATATGTCATAAATTAATTAGTAAGAGTTTTAAAAAATTAAA-
1 AATAAAATAATACTAATTTATTAATAT-TCAAAAATTAATAAGTAAGAGATTTAAAAAA-TAAAT
* *
19811133 CTATTTACCT-AACAAGTTCAAATAG
64 CTGTTTA-TTGAACAAGTTCAAATAG
19811158 ATTTTTTTTA
Statistics
Matches: 1498, Mismatches: 326, Indels: 136
0.76 0.17 0.07
Matches are distributed among these distances:
174 2 0.00
175 30 0.02
176 3 0.00
177 134 0.09
178 12 0.01
179 19 0.01
180 202 0.13
181 973 0.65
182 70 0.05
183 53 0.04
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.40
Consensus pattern (178 bp):
AATAAAATAATACTAATTTATTAATATTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCT
GTTTATTGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGAC
CTTTTATTTGTCATAAAATAATTGTTTCATTCATATAAGCTTATTCAA
Found at i:19809685 original size:362 final size:361
Alignment explanation
Indices: 19807995--19811157 Score: 1871
Period size: 362 Copynumber: 8.8 Consensus size: 361
19807985 GATTTCATCC
* * **
19807995 ATTCATACAAGCTCATTTC-AAATAAAATAATACAAATTTATTAATATT-AAGACAATTAATAAG
1 ATTCATACAAGCTTA-TCCAAAATAAAATAATATTAATTTATTAATATTCAA-A-AATTAATAAG
* * * * ** * *
19808058 TAAAAGATTTAAAAAATAAATCT-GTTCACTAAACAAGTTCAAATTGTTATGACCATTTGAACAA
63 TAAGAGATTTAAAAAATAAATCTAGTTTACTGAACCAGTTCAAATAATTATGGCCAATTGAACAA
* * * * * * * * *
19808122 -CA---AATT---GT--TATGACTTTTTGTTTTATCATAAAACAATTATTTCTGC--TCATACAA
128 TTATTTATTTCAAATCATATGACCTTTTGTTTTGTCATAAAATAATTGTTT-TTCATTCATATAA
* ** * * ** * * *
19808176 TCTTA-TTGGATTAAAATAATATTAATTTATTAATATTTTGACAATTAATAAGTAAAAGATTTAA
192 GCTTATTTAAAATAAAATAATACTAATTTATTAATA-TTCAAAAATTAATAAGTAAGAGATATAA
* * * * * * * *
19808240 AAAATAAATAC-GTATACCGAACAATTTCAAATAGTCATGACCATTTGAATAATTATCCATTTCA
256 AAAATAAAT-CTGTTTATCGAACAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCA
* * * * *
19808304 AAT-GATTGTAACCTTTTGTTTTGTAATAAAACAATTGTTTCA
320 AATCG-TTATGACCTTTTGTTTTATCATAAAACAATTGTTTCT
* * *** * * *
19808346 ATTAATATAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAGTGAGTA
1 ATTCATACAAGCTTATCCAAAATAAAATAATATTAATTTATTAATA-TTCAAAAATTAATAAGTA
** * * * ** * * * * *
19808411 AGAGAACTAAAACAATGAAT-TTGTTTAC-CAAAAAGTTCAACTAGTTAT-GACTATCTAAAACA
65 AGAGATTTAAAA-AATAAATCTAGTTTACTGAACCAGTTCAAATAATTATGGCCAAT-T-GAACA
* * * * * **
19808473 ATTATTTATTTCAGAA-CATTATGGCCTTTTATTTTGTCAAAAAATAATTGGTTCT-ATTCATCC
127 ATTATTTATTTCA-AATCA-TATGACCTTTTGTTTTGTCATAAAATAATTGTTTTTCATTCATAT
* * *
19808536 AAGCTTATTTCAAATAAAATAATA-TAAATTTATTGATATTCCAAAAATTAATAAGCAA-A-ATT
190 AAGCTTATTTAAAATAAAATAATACT-AATTTATTAATATT-CAAAAATTAATAAGTAAGAGA-T
* * * * * *
19808598 TTGAAAAATAAATTTGTTT-TCTGAGCACA-TTCAAATAGTTATGAATATTTGAACAATTATCTA
252 ATAAAAAATAAATCTGTTTATC-GAACA-AGTTCAAATAGTTATGACTATTTAAACAATTATCTA
** * * ** * * *
19808661 TTTCAAATCAG-TATGACCAATTATTCTGCCATAAACCAGTTGTTTAT
315 TTTCAAATC-GTTATGACCTTTTGTTTTATCATAAAACAATTGTTTCT
*** * * * * *
19808708 ATTCATACAAGCTTATTTGAAATGAAATAATACTAATTTATTAAAATTTTAAAAATTAATAAGCA
1 ATTCATACAAGCTTATCCAAAATAAAATAATATTAATTTATTAATA-TTCAAAAATTAATAAGTA
* *** * * * * * * *
19808773 AAAGATTTAAAAAATAAATCT-GTTTACCT-AGTGAGTTCAATTAGTTATGACTATTTAAATAAT
65 AGAGATTTAAAAAATAAATCTAGTTTA-CTGAACCAGTTCAAATAATTATGGCCAATTGAACAAT
** * * * *
19808836 TATTTATTTCAAATCAATATGATTTTTTGTTTTTTCATAAAGCT-GTTGTTTCT-ATTCATA-AA
129 TATTTATTTCAAATC-ATATGACCTTTTGTTTTGTCATAAA-ATAATTGTTTTTCATTCATATAA
* * ** * * *
19808898 G----GTT----T---AT-GT--GGA---ATTAGTATTCTAAAAATTAATAAGTTAGAGATTTAA
192 GCTTATTTAAAATAAAATAATACTAATTTATTAATATTC-AAAAATTAATAAGTAAGAGATATAA
* * * * * * * * * *
19808946 AAATTAAATCTATTTACCGAATAAGTTCAAATAGTCATGTCTGTTTGAACTATCATCTATTTCAA
256 AAAATAAATCTGTTTATCGAACAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAA
** * * *
19809011 ATCGTTATGAAATTTTGTTTTATCGCAAAATAATACCAATTATTCAAAATAATTGGT
321 ATCGTTATGACCTTTTGTTTTAT--C---ATAA-AAC-A--ATT----GT--TT-CT
** ** * ** * **
19809068 ATTCATACAAAATTATTTAGAATAAAATAATACCAATTTATTACTATTTTGAAAA-T--TAA-TA
1 ATTCATACAAGCTTATCCAAAATAAAATAATATTAATTTATTAATA-TTCAAAAATTAATAAGTA
* * * * * * * *
19809129 AG-GATTTAAAAAATAAATGT-GTTTGCTGAATCAATTCAAATAATTA-AGCCTATGAGAACACT
65 AGAGATTTAAAAAATAAATCTAGTTTACTGAACCAGTTCAAATAATTATGGCCAAT-TGAACAAT
* * * *
19809191 TATCTATTTCAAATCATTCTGACCTTTT-ATTTGTCATAAAATAATTG--TTTCAGTTCATATAT
129 TATTTATTTCAAATCA-TATGACCTTTTGTTTTGTCATAAAATAATTGTTTTTCA-TTCATATAA
* ** * * *
19809253 GCTTATTCAAAATAAAATAATACTAATTTATTAGCATTCAAAAAATTAATAAGCAAGAAATTAAA
192 GCTTATTTAAAATAAAATAATACTAATTTATTAATATTC-AAAAATTAATAAGTAAGAGA-TATA
* ** * * *
19809318 AAAAATAAATCTGTTTATTGAACAAGTTCATTTAGTTATAACTATTTGAACAATTATCTATTTAA
255 AAAAATAAATCTGTTTATCGAACAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCA
* * * *
19809383 AATTGTTATGACCTTTTATTTTTATCGTAAAGCAATTGTTTC-
320 AATCGTTATGACCTTTT-GTTTTATCATAAAACAATTGTTTCT
* * * *
19809425 AGTGCATAAAAGCTTATCCAAAATAAAATAATATT-ACTTATTAATATTGCAAAAATTCATAAGT
1 A-TTCATACAAGCTTATCCAAAATAAAATAATATTAATTTATTAATATT-CAAAAATTAATAAGT
* * *
19809489 TAGAGATTTAAAAAATAAAT-TAGTTTATTGAATCAGTTCAAATAATTATGGCCAATTGAACAAT
64 AAGAGATTTAAAAAATAAATCTAGTTTACTGAACCAGTTCAAATAATTATGGCCAATTGAACAAT
*
19809553 TATTTATTTCAAATCGATATGAACTTTTGTTTTGTCATAAAATAATTGTTTTTCA-TCATATAAG
129 TATTTATTTCAAATC-ATATGACCTTTTGTTTTGTCATAAAATAATTGTTTTTCATTCATATAAG
* * * * ** *
19809617 CCTATTTGATATAAAATAATAGTAATTTGCTAATATTTCAAAAATTAATAAGTAGGAGATATAAA
193 CTTATTTAAAATAAAATAATACTAATTTATTAATA-TTCAAAAATTAATAAGTAAGAGATATAAA
* * * * * *
19809682 AAATAAATCTATTTATCAAACCAGTTCAAATAGTTATGAATATTTGAACAATTATATATTTCAAA
257 AAATAAATCTGTTTATCGAACAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAA
* * * * * *
19809747 TTGTTATAACCTTTTGTTATGTCTTAAAACAATTATTTCT
322 TCGTTATGACCTTTTGTTTTATCATAAAACAATTGTTTCT
* * * * * * ** * *
19809787 ATTTATACAAGTTTATTCAGAATAAAATAATACTAATGTAACAATATTCTAGAAATTAATAACTA
1 ATTCATACAAGCTTATCCAAAATAAAATAATATTAATTTATTAATATTC-AAAAATTAATAAGTA
* * ** * * * *
19809852 AGAGATTTGAAAAATAAATTTA-TTTGTTAAACCAGTTCAAATAGTTA-GGGCTATATGAACAAT
65 AGAGATTTAAAAAATAAATCTAGTTTACTGAACCAGTTCAAATAATTATGGCCAAT-TGAACAAT
* * * *
19809915 TCTTTATTTCAAATTATTATGACCTTTTGTTTTGTCATAAAATAA-T-TTTTTCAGTTCTTAGTT
129 TATTTATTTCAAATCA-TATGACCTTTTGTTTTGTCATAAAATAATTGTTTTTCA-TTCATA-TA
* * * * *
19809978 A-CTTACTCAAAATAAAATCAA-ACAAATTTATTAACATTTCAAAAATTAATAAGTAAGAGATTT
191 AGCTTATTTAAAATAAAAT-AATACTAATTTATTAATA-TTCAAAAATTAATAAGTAAGAGATAT
* * * * * *
19810041 AAAAAATAACTATATTTGTCGAACCAGTTCAAATAATTATGACTATTTAAACAATTATCTATTTC
254 AAAAAATAAATCTGTTTATCGAACAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTC
* * * * *
19810106 AAATCGTCATTACCTTTTATTTTGTCATAAAACAAATGACTTT-T
319 AAATCGTTATGACCTTTTGTTTTATCATAAAACAATTG--TTTCT
* * **** *** *
19810150 -TTCATATAAGTTTATTTGGAATAAAATAATATTAATTTATTAATATTTTGAAA--ACTAAG-AA
1 ATTCATACAAGCTTATCCAAAATAAAATAATATTAATTTATTAATATTCAAAAATTAATAAGTAA
* * * ** * * *
19810211 GAGATTTAAAAAATAAATCTA-TTTACTAAACCAGTTTAATTAATTATAACTATTTGAATAATTA
66 GAGATTTAAAAAATAAATCTAGTTTACTGAACCAGTTCAAATAATTATGGCCAATTGAACAATTA
* * * *
19810275 TTTATTTCAAATCATGATGACCATTTGTTTTATCATAAAAGAATTGTTTCT-ATTCATAT-AGTC
131 TTTATTTCAAATCAT-ATGACCTTTTGTTTTGTCATAAAATAATTGTTTTTCATTCATATAAG-C
** * ** * *
19810338 TTATTTGGAATAAAGTAATACTAATTTATTAATATTCTGAAATTAATAAGTAACG-GATTTAAGA
194 TTATTTAAAATAAAATAATACTAATTTATTAATATTCAAAAATTAATAAGTAA-GAGATATAAAA
* * ** * * * * * * *
19810402 AATGAATTTGTTCGTCTAACTAGTGCAAATAGTTATGATTGTTTAAATAATTATCTATTGCAAAT
258 AATAAATCTGTTTATCGAACAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAAT
* * *
19810467 CATTATGACCTTTTGTTTTATCACAAAACAGTTGTTTCT
323 CGTTATGACCTTTTGTTTTATCATAAAACAATTGTTTCT
* *
19810506 ATTCATACAAGCTTATCGAAAATAACATAAT-TGTAATTTATTAATATTCCAAAAATTAATAAGT
1 ATTCATACAAGCTTATCCAAAATAAAATAATAT-TAATTTATTAATATT-CAAAAATTAATAAGT
* * * * * * *
19810570 AAGAGATTTAAAAAA-AGAATCT-GTTTACCGAACAAGTTCAAATAGTTATGACTATTTAAACAA
64 AAGAGATTTAAAAAATA-AATCTAGTTTACTGAACCAGTTCAAATAATTATGGCCAATTGAACAA
* * * * * *
19810633 TTATCTATTTCAAATCGCTATAACCATTTGTTTTGTCATAAAATAA-T-TTTTTCTATCCAAATA
128 TTATTTATTTCAAATC-ATATGACCTTTTGTTTTGTCATAAAATAATTGTTTTTC-ATTCATATA
* * * * * *
19810696 AGTTTATTTAAAACAAAATTATACAAATTTATTAATATTCAGACAATTAATAAGTAAAAGAT-TA
191 AGCTTATTTAAAATAAAATAATACTAATTTATTAATATTCA-AAAATTAATAAGTAAGAGATATA
* * * *
19810760 AAAATATAAATCTGTTTATCGAATAAGTTCAAATTGTTATGACTATTTAAACAATTATTTATTTT
255 AAAA-ATAAATCTGTTTATCGAACAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTC
* * * *
19810825 AAATCGTTATGACTTTTTGTTTTATTATAAAATAATTGTTTTT
319 AAATCGTTATGACCTTTTGTTTTATCATAAAACAATTGTTTCT
* * * * * * * ***
19810868 CTCCTTTCAAGCCTATTCAAATTAAAATAATATTAATTTATTAATATTTCATTTATTAATAAGTA
1 ATTCATACAAGCTTATCCAAAATAAAATAATATTAATTTATTAATA-TTCAAAAATTAATAAGTA
* * * * * * ** * * **
19810933 AAAGATTTTAAAAAT-AAT-TATGTTTACTGTACAAGTTCAAATAGTCATAACTATTTGAGTAAT
65 AGAGATTTAAAAAATAAATCTA-GTTTACTGAACCAGTTCAAATAATTATGGCCAATTGAACAAT
* * * ** *
19810996 TATCTATTTAAAATCATTATGACCTTTTATTTCATCATAAAATAATT-TTCTT-AGTTCATATAA
129 TATTTATTTCAAATCA-TATGACCTTTTGTTTTGTCATAAAATAATTGTTTTTCA-TTCATATAA
* ** * * * *
19811059 ACTTATTCGAAATAAAATAATACTAATTTATTAATATGTCATAAATTAATTAGTAAGAGTTTTAA
192 GCTTATTTAAAATAAAATAATACTAATTTATTAATAT-TCAAAAATTAATAAGTAAGAGATATAA
* * *
19811124 AAAATTAAA-CTATTTACCTAACAAGTTCAAATAG
256 AAAA-TAAATCTGTTTATCGAACAAGTTCAAATAG
19811158 ATTTTTTTTA
Statistics
Matches: 2181, Mismatches: 486, Indels: 279
0.74 0.16 0.09
Matches are distributed among these distances:
342 1 0.00
343 23 0.01
344 67 0.03
345 2 0.00
346 2 0.00
348 1 0.00
349 6 0.00
350 7 0.00
351 76 0.03
352 22 0.01
353 7 0.00
354 24 0.01
355 65 0.03
356 12 0.01
357 163 0.07
358 145 0.07
359 17 0.01
360 74 0.03
361 259 0.12
362 940 0.43
363 143 0.07
364 7 0.00
365 8 0.00
366 2 0.00
367 2 0.00
368 2 0.00
369 4 0.00
372 27 0.01
373 67 0.03
374 6 0.00
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (361 bp):
ATTCATACAAGCTTATCCAAAATAAAATAATATTAATTTATTAATATTCAAAAATTAATAAGTAA
GAGATTTAAAAAATAAATCTAGTTTACTGAACCAGTTCAAATAATTATGGCCAATTGAACAATTA
TTTATTTCAAATCATATGACCTTTTGTTTTGTCATAAAATAATTGTTTTTCATTCATATAAGCTT
ATTTAAAATAAAATAATACTAATTTATTAATATTCAAAAATTAATAAGTAAGAGATATAAAAAAT
AAATCTGTTTATCGAACAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCGT
TATGACCTTTTGTTTTATCATAAAACAATTGTTTCT
Found at i:19811533 original size:173 final size:177
Alignment explanation
Indices: 19811345--19811728 Score: 437
Period size: 173 Copynumber: 2.2 Consensus size: 177
19811335 TTTTAAATCT
19811345 CTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTT-ATTTCAAATAACCTCGT-ATGAAC
1 CTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTAATTT-AAATAACCT-GTGATGAAC
*
19811408 TAAAACAATTGTTTTATGA-CAAAATAAAATG-TCATAACAAGTTTAAATAAACAACTATT-TAG
64 TAAAACAATTGTTTTAT-ATCAAAACAAAA-GATCATAACAAGTTTAAATAAACAACTATTATAG
* * * *
19811470 TCGTAACTATTTGAATTTGTTTGATAAATA-A-ATTTAGTT-AAA-CTTTTG
127 TCATAACTATTTGAATTTATTCGATAAACAGATATTT-GTTCAAATCTTTTG
* ** * * *
19811518 CTTATTAATTTTTGAAATATTAAGAAATTAGTATTATTTTAATTTGGATAAGCTTTGATGAACTG
1 CTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTAATTTAAATAACCTGTGATGAACTA
* * * *
19811583 AAACAATTGTTTTATATCAAAACAAAAGATTATAACAATTTTAAATAAATAATTATTCAAATAGT
66 AAACAATTGTTTTATATCAAAACAAAAGATCATAACAAGTTTAAATAAACAACTATT---ATAGT
* *
19811648 CATAGCTATTTGAATTTATTCGATAAACAGATTCATTTTTTCAAATCTTTTG
128 CATAACTATTTGAATTTATTCGATAAACAGA-T-ATTTGTTCAAATCTTTTG
*
19811700 CTTATTAATTTTTTG-AATATTAGTAAATT
1 CTTATTAA-TTTTTGAAATATTAATAAATT
19811729 TAGATTGTTT
Statistics
Matches: 177, Mismatches: 19, Indels: 21
0.82 0.09 0.10
Matches are distributed among these distances:
172 3 0.02
173 100 0.56
174 4 0.02
177 28 0.16
178 1 0.01
180 2 0.01
181 7 0.04
182 26 0.15
183 6 0.03
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.43
Consensus pattern (177 bp):
CTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTAATTTAAATAACCTGTGATGAACTA
AAACAATTGTTTTATATCAAAACAAAAGATCATAACAAGTTTAAATAAACAACTATTATAGTCAT
AACTATTTGAATTTATTCGATAAACAGATATTTGTTCAAATCTTTTG
Found at i:19812491 original size:362 final size:355
Alignment explanation
Indices: 19811186--19812502 Score: 1017
Period size: 362 Copynumber: 3.7 Consensus size: 355
19811176 ATTTATTAAT
* * ** * *
19811186 TTAATAAATTAGTATTATTTTCTTCGAAATAAGCTTGTA-TAATAAAAAAACATTTGTTATATGA
1 TTAATAAATTAGTATTATTTTATTC-CAATAAGCTTGTATTAAT--TGAAACAATTGTTTTATGA
* * * *** *
19811250 CC-AAACAAAAGGTAACAACAATTTGAAATAGATAATTATTGAAATGGCAATAATTATTTGAATT
63 CCAAAACAAAAGGTTATAACAATTTGAAATAGATAATTATTCAAATAATAATAACTATTTGAATT
* * *
19811314 GATTTAGTAAACAAATTCACTTTTTAAATC----TCTTATTAATTTTTGAAATATTAATAAATTA
128 G-TTCAGTAAACAGATTCATTTTTTAAATCTTTTTCTTATTAATTTTTGAAATATTAATAAATTA
* * * *
19811375 GTATTATTTTATTTCAAATAACCTCGTATGAACTAAAACAATTGTTTTATGACAA-AATAAAATG
192 GTATTATTTTATTTCAAATAAGCTTGTATGAACTAAAACAATTATTTTATGACAATAA-AAAAGG
* * * * * * **
19811439 TCATAACAAGTTT-AAATAAACAACTATT---TAGTCGTAACTATTTGAATTTGTTTGAT-AA-A
256 TCATAA-GA-TTTGAAATAGATAATTATTCAATAGTCTTAACTATTTGAACTAATTTGATAAACA
* *
19811498 TA-AATTTAGTTAAACTTTTGCTTATTAATTTTTGAAATA
319 TATTATTT-TTTAAA-TTTT-CTTATTAATTTTTGAAATA
* *** * * *
19811537 TTAAGAAATTAGTATTATTTTAATTTGGATAAGCTT-TGATGAACTGAAACAATTGTTTTAT-AT
1 TTAATAAATTAGTATTATTTT-ATTCCAATAAGCTTGT-ATTAATTGAAACAATTGTTTTATGAC
* * * * * *
19811600 CAAAACAAAAGATTATAACAATTTTAAATAAATAATTATTCAAATAGTCATAGCTATTTGAATTT
64 CAAAACAAAAGGTTATAACAATTTGAAATAGATAATTATTCAAATAATAATAACTATTTGAA-TT
* * *
19811665 ATTC-GATAAACAGATTCATTTTTTCAAATCTTTTGCTTATTAATTTTTTG-AATATTAGTAAAT
128 GTTCAG-TAAACAGATTCATTTTTT-AAATCTTTTTCTTATTAA-TTTTTGAAATATTAATAAA-
* * * * * * * * *
19811728 TTAG-ATTGTTTTGTTCCCAATAAGTTTATAAGATA-TGAAACAAATATTTTATGAC--TAAACA
189 TTAGTATTATTTTATTTCAAATAAGCTTGTATGA-ACTAAAACAATTATTTTATGACAATAAA-A
* * * *
19811789 AAGGGTCA-AAGCAATTTGAAATAGATATTTATTCTAATAGTTTTAACTATTTGAACTGATTCGA
252 AA-GGTCATAAG--ATTTGAAATAGATAATTATTC-AATAGTCTTAACTATTTGAACTAATTTGA
* *
19811853 CAAGCACAT-TTATTTTTTAAA-TCTCTTATTAATTTTTGAAATA
313 TAA--ACATATTATTTTTTAAATTTTCTTATTAATTTTTGAAATA
* * ** * *
19811896 TTATTAAATTAGTATTATTTT-TAACCGAATAAGCTTCCATGGTTA-T-AAATAATTGTTTTAT-
1 TTAATAAATTAGTATTATTTTAT-TCC-AATAAGCTTGTAT--TAATTGAAACAATTGTTTTATG
* * * ** * * * *
19811957 AACAAAACAAAAAGTTTTAATGATTTGAGATTGATAATTGTTCAAATAATCATAACTATTTGAAT
62 ACCAAAACAAAAGGTTATAACAATTTGAAATAGATAATTATTCAAATAATAATAACTATTTGAAT
* * * * * * * ** *
19812022 CCGTTCAATAAACAGATTTATTGTATAAATCTGTTACTTATTAATTTTTGAAATATTAATCGAGT
127 -TGTTCAGTAAACAGATTCATTTTTTAAATCTTTTTCTTATTAATTTTTGAAATATTAATAAATT
* * * * *
19812087 AATATTATTTTATTTCAAATAAACTTGAATG-ATTAAAAACAATTGTTTTATGACAATAAAAAAG
191 AGTATTATTTTATTTCAAATAAGCTTGTATGAACT-AAAACAATTATTTTATGACAATAAAAAAG
* * * * *
19812151 GTCATAATGATTTGAAATAGATAATTATTCAAATGGCCTTAATTATTTTAACTAATTTGGTAAAC
255 GTCATAA-GATTTGAAATAGATAATTATTC-AATAGTCTTAACTATTTGAACTAATTTGATAAAC
**
19812216 ATGATTATTTTTTAAATTTATTACTTATTAATTTAGGAAATA
318 AT-ATTATTTTTTAAA-TT-TT-CTTATTAATTTTTGAAATA
*
19812258 TTAATAAATTAGTATTATTTTATTCCATCTAAGCTTGTATTAATTGAAACAATTGTTTTATGA-C
1 TTAATAAATTAGTATTATTTTATTCCA-ATAAGCTTGTATTAATTGAAACAATTGTTTTATGACC
* * * * * * *
19812322 AAATCAAAAGGTTATAATAATTTTAAATAGACAATTATTAAAATAATAATAATTATTTAAACTTG
65 AAAACAAAAGGTTATAACAATTTGAAATAGATAATTATTCAAATAATAATAACTATTTGAA-TTG
* * * * *
19812387 TTCAGTAAATATATTTATTTTTTAAATCTTTTTCTTATTAATTTTTTG-AATGTTAGTAAATTAG
129 TTCAGTAAACAGATTCATTTTTTAAATCTTTTTCTTATTAA-TTTTTGAAATATTAATAAATTAG
* *
19812451 TATTAATTTA-TTCTAAATAAGCTTGTATGAACTGAAACAATTATTTTATGAC
193 TATTATTTTATTTC-AAATAAGCTTGTATGAACTAAAACAATTATTTTATGAC
19812503 TCAACAAAAG
Statistics
Matches: 748, Mismatches: 159, Indels: 107
0.74 0.16 0.11
Matches are distributed among these distances:
349 3 0.00
350 81 0.11
351 36 0.05
352 4 0.01
353 1 0.00
354 10 0.01
355 72 0.10
356 16 0.02
357 10 0.01
358 121 0.16
359 157 0.21
360 12 0.02
361 7 0.01
362 201 0.27
363 17 0.02
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.42
Consensus pattern (355 bp):
TTAATAAATTAGTATTATTTTATTCCAATAAGCTTGTATTAATTGAAACAATTGTTTTATGACCA
AAACAAAAGGTTATAACAATTTGAAATAGATAATTATTCAAATAATAATAACTATTTGAATTGTT
CAGTAAACAGATTCATTTTTTAAATCTTTTTCTTATTAATTTTTGAAATATTAATAAATTAGTAT
TATTTTATTTCAAATAAGCTTGTATGAACTAAAACAATTATTTTATGACAATAAAAAAGGTCATA
AGATTTGAAATAGATAATTATTCAATAGTCTTAACTATTTGAACTAATTTGATAAACATATTATT
TTTTAAATTTTCTTATTAATTTTTGAAATA
Found at i:19812513 original size:181 final size:181
Alignment explanation
Indices: 19811186--19812515 Score: 901
Period size: 181 Copynumber: 7.4 Consensus size: 181
19811176 ATTTATTAAT
* * * *** * *
19811186 TTAATAAATTAGTATTATTTTCTTCGAAATAAGCTTGTATAATAAAAAAACATTTGTTATATGAC
1 TTAATAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGA-ACTGAAACAATTGTTTTATGAC
* * * * * *
19811251 CAAACAAAAGGTAACAACAATTTGAAATAGATAATTATTGAAAT-GGCAATAATTATTTGAA-TT
65 TAAACAAAAGGTCATAACAATTTGAAATAGATAATTATTCAAATAGTC-ATAACTATTTGAACTT
* * *
19811314 GATTTAGTAAACAAATTCACTTTTTAAATC----TCTTATTAATTTTTGAAATA
129 G-TTCAGTAAACAAATTTATTTTTTAAATCTTTTTCTTATTAATTTTTGAAATA
* * *
19811364 TTAATAAATTAGTATTATTTTATT-TCAAATAACCTCGTATGAACTAAAACAATTGTTTTATGAC
1 TTAATAAATTAGTATTATTTTATTCT-AAATAAGCTTGTATGAACTGAAACAATTGTTTTATGAC
* * * * * * * *
19811428 AAAATAAAATGTCATAACAAGTTT-AAATAAACAACTATT----TAGTCGTAACTATTTGAATTT
65 TAAACAAAAGGTCATAACAA-TTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTT
* * * *
19811488 GTT-TGATAAATAAATTTA---GTTAAA-CTTTTGCTTATTAATTTTTGAAATA
129 GTTCAG-TAAACAAATTTATTTTTTAAATCTTTTTCTTATTAATTTTTGAAATA
* **
19811537 TTAAGAAATTAGTATTATTTTAATT-TGGATAAGCTT-TGATGAACTGAAACAATTGTTTTAT-A
1 TTAATAAATTAGTATTATTTT-ATTCTAAATAAGCTTGT-ATGAACTGAAACAATTGTTTTATGA
* * * * * * *
19811599 TCAAAACAAAAGATTATAACAATTTTAAATAAATAATTATTCAAATAGTCATAGCTATTTGAATT
64 -CTAAACAAAAGGTCATAACAATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACT
* * * *
19811664 TATTC-GATAAACAGATTCATTTTTTCAAATCTTTTGCTTATTAATTTTTTG-AATA
128 TGTTCAG-TAAACAAATTTATTTTTT-AAATCTTTTTCTTATTAA-TTTTTGAAATA
* * * ** * * * * *
19811719 TTAGTAAATTTAG-ATTGTTTTGTTCCCAATAAGTTTATAAGATA-TGAAACAAATATTTTATGA
1 TTAATAAA-TTAGTATTATTTTATTCTAAATAAGCTTGTATGA-ACTGAAACAATTGTTTTATGA
* * * **
19811782 CTAAACAAAGGGTCA-AAGCAATTTGAAATAGATATTTATTCTAATAGTTTTAACTATTTGAAC-
64 CTAAACAAAAGGTCATAA-CAATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACT
*
19811845 TGATTC-G-ACAAGCACATTTATTTTTTAAATC----TCTTATTAATTTTTGAAATA
128 TG-TTCAGTA-AA-CAAATTTATTTTTTAAATCTTTTTCTTATTAATTTTTGAAATA
* * ** ** * * *
19811896 TTATTAAATTAGTATTATTTT-TAACCGAATAAGCTTCCATGGTTA-T-AAATAATTGTTTTATA
1 TTAATAAATTAGTATTATTTTAT-TCTAAATAAGCTTGTAT-G-AACTGAAACAATTGTTTTATG
* * ** ** * * * *
19811958 ACAAAACAAAAAGTTTTAATGATTTGAGATTGATAATTGTTCAAATAATCATAACTATTTGAA-T
63 ACTAAACAAAAGGTCATAACAATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACT
* * * * * * *
19812022 CCGTTCAATAAACAGATTTATTGTATAAATCTGTTACTTATTAATTTTTGAAATA
128 -TGTTCAGTAAACAAATTTATTTTTTAAATCTTTTTCTTATTAATTTTTGAAATA
** * * * * * *
19812077 TTAATCGAGTAATATTATTTTATT-TCAAATAAACTTGAATG-ATTAAAAACAATTGTTTTATGA
1 TTAATAAATTAGTATTATTTTATTCT-AAATAAGCTTGTATGAACT-GAAACAATTGTTTTATGA
* ** * * * * *
19812140 C-AATAAAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATGGCCTTAATTATTTTAACT
64 CTAA-ACAAAAGGTCATAACAATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACT
** ** * * **
19812204 AATTTGGTAAACATGA-TTATTTTTTAAAT-TTATTACTTATTAATTTAGGAAATA
128 TGTTCAGTAAACA-AATTTATTTTTTAAATCTT-TTTCTTATTAATTTTTGAAATA
* ** * *
19812258 TTAATAAATTAGTATTATTTTATTCCATCTAAGCTTGTATTAATTGAAACAATTGTTTTATGAC-
1 TTAATAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAACTGAAACAATTGTTTTATGACT
* * * * * * * * *
19812322 AAATCAAAAGGTTATAATAATTTTAAATAGACAATTATTAAAATAATAATAATTATTTAAACTTG
66 AAA-CAAAAGGTCATAACAATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTG
* * *
19812387 TTCAGTAAATATATTTATTTTTTAAATCTTTTTCTTATTAATTTTTTG-AATG
130 TTCAGTAAACAAATTTATTTTTTAAATCTTTTTCTTATTAA-TTTTTGAAATA
* * *
19812439 TTAGTAAATTAGTATTAATTTATTCTAAATAAGCTTGTATGAACTGAAACAATTATTTTATGACT
1 TTAATAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAACTGAAACAATTGTTTTATGACT
*
19812504 CAACAAAAGGTC
66 AAACAAAAGGTC
19812516 CAAAATAATC
Statistics
Matches: 905, Mismatches: 184, Indels: 123
0.75 0.15 0.10
Matches are distributed among these distances:
169 1 0.00
170 5 0.01
172 6 0.01
173 121 0.13
174 9 0.01
176 11 0.01
177 190 0.21
178 48 0.05
179 2 0.00
180 9 0.01
181 355 0.39
182 135 0.15
183 13 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (181 bp):
TTAATAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAACTGAAACAATTGTTTTATGACT
AAACAAAAGGTCATAACAATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGT
TCAGTAAACAAATTTATTTTTTAAATCTTTTTCTTATTAATTTTTGAAATA
Found at i:19812623 original size:111 final size:111
Alignment explanation
Indices: 19812411--19812610 Score: 251
Period size: 111 Copynumber: 1.8 Consensus size: 111
19812401 TTATTTTTTA
* * * *
19812411 AATCTTTTTCTTATTAATTTTTTGAATGTTAGTAAATTAGTATTAATTTATTCTAAATAAGCTTG
1 AATCTTTTGCTTACTAATTTTTTGAATATTAGTAAATTAGTATTAATTTAATCTAAATAAGCTTG
* * * * *
19812476 TATGAACTGAAACAATTATTTTATGACTCAACAAAAGGTCCAAAAT
66 TATGAACTAAAACAATTATTTAACGACTAAAAAAAAGGTCCAAAAT
* * * *
19812522 AATCTTTTGCTTACTAA-TTTTTGAAATATTATTAAATTAGTATTATTTTAATCTGAATAAGTTT
1 AATCTTTTGCTTACTAATTTTTTG-AATATTAGTAAATTAGTATTAATTTAATCTAAATAAGCTT
*
19812586 GTATGAAC-AAAACAATTGTTTAACG
65 GTATGAACTAAAACAATTATTTAACG
19812611 GTAAAAGAAA
Statistics
Matches: 76, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
110 19 0.25
111 57 0.75
ACGTcount: A:0.38, C:0.09, G:0.10, T:0.43
Consensus pattern (111 bp):
AATCTTTTGCTTACTAATTTTTTGAATATTAGTAAATTAGTATTAATTTAATCTAAATAAGCTTG
TATGAACTAAAACAATTATTTAACGACTAAAAAAAAGGTCCAAAAT
Found at i:19813149 original size:180 final size:181
Alignment explanation
Indices: 19812522--19813934 Score: 1043
Period size: 177 Copynumber: 7.9 Consensus size: 181
19812512 GGTCCAAAAT
* * * * * * * *
19812522 AATCTTTTGCTTACTAATTTTTGAAATATTATTAAATTAGTATTATTTTA-ATCTGAATAAGTTT
1 AATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTATTTC-GAACAAGCTT
* * * * ** * * ** *
19812586 GTATGAAC-AAAACAATTGTTTAACGGTAAAAGAAAAAGCCATAACAATTTGAAATAGATAATCA
65 ATATGAACAAAAATAATTGTTTTATGACAAAACAAAAAGTCATAATGATTTGAAATAGATAATTA
* * * * ** *
19812650 TTCATATAGTC-TAAACTATTTAAACTAGTTTAGCAATTAGATTTATTTTTTA
130 TTCAAATAGTCAT-AACTATTTGAACTGGTTTAGTAAACAGAATTATTTTTTA
* * * * * * * * * **
19812702 ATTTTCTTGGC-TATTAA-GTTTCATAATATTATTAAATTAATATTATTTTATTCCAAATAA-AA
1 AATCTCTT-ACTTATTAATTTTTGA-AATATTAATAAATTAATATTATTTTATTTCGAACAAGCT
* * ** * * * * *
19812764 TAGTATCAACAGAACCAATTGTTTGATGACAAAATAAAAGGTTATAATGATTTGAAAGAGATAAT
64 TA-TATGAACAAAAATAATTGTTTTATGACAAAACAAAAAGTCATAATGATTTGAAATAGATAAT
** * * * * * * * * *
19812829 TATTTGAATAGTTAAAACTATTTGAAATAGTTTGGTAAGCATATTTACTTTTTA
128 TATTCAAATAGTCATAACTATTTGAACTGGTTTAGTAAACAGAATTATTTTTTA
* * * * * * *
19812883 AATCTTTTACTAATTAATTTTTTAAATATTAATAAATTAGTATTATTTTATTTTGAACAAACTTG
1 AATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTATTTCGAACAAGCTTA
* * * * *
19812948 TATTAACAAAAACAATTGTTTTATGACAAAACAAAAAGTAATAATGATTTAAAATAGATAATTGT
66 TATGAACAAAAATAATTGTTTTATGACAAAACAAAAAGTCATAATGATTTGAAATAGATAATTAT
* * * * * *
19813013 TCAAATAGTTATAATTATTT-AATTGGTTCAGTAAATAGAATTATTTTCTA
131 TCAAATAGTCATAACTATTTGAACTGGTTTAGTAAACAGAATTATTTTTTA
* * * * *
19813063 AATCTCTTACTTATAAATTTTTGAAATATTAATAAATTAATTTTATTCTATTTCCAATAAGCTTA
1 AATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTATTTCGAACAAGCTTA
* ** * * ** *
19813128 TATGAGCTCAAATAATTGTTTTATGACAAAA-TAAAAGTAATAACAATTTGAAATAAATAATTAT
66 TATGAACAAAAATAATTGTTTTATGACAAAACAAAAAGTCATAATGATTTGAAATAGATAATTAT
* * * * * * **
19813192 TCATATAGTCTTAATTGTTTAAACTGGTTCAACAAACAG-ATTCATTTTTTA
131 TCAAATAGTCATAACTATTTGAACTGGTTTAGTAAACAGAATT-ATTTTTTA
* * * * *
19813243 AA--TCTTAGTTATTAATTTTTTG-AATATTACTAAATTAGTATTA-TTTAATTCTGAATAAGCT
1 AATCTCTTACTTATTAA-TTTTTGAAATATTAATAAATTAATATTATTTTATTTC-GAACAAGCT
* * * * * * * * *
19813304 TGTATGAACAGAAAT-ATTTTTTTATGATAGAACAAAAGGGTTATAATAATTTGAAATAGATAGT
64 TATATGAACAAAAATAATTGTTTTATGACAAAACAAAA-AGTCATAATGATTTGAAATAGATAAT
* * *
19813368 TGTTCAAATAGTCATAACTATTTGAGCTGGTTTAGCAAACA-AATTTATTTTTTA
128 TATTCAAATAGTCATAACTATTTGAACTGGTTTAGTAAACAGAA-TTATTTTTTA
* * * * *
19813422 AA--T-GT-CTTATTAATTCTTGAAATATTAAAAAATTAATATTATTTTATTTCAAAAAAGCTTA
1 AATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTATTTCGAACAAGCTTA
*** * * * * * * *
19813483 TATGTTGAAAAACAATTGTTTTATAACAGAACAATAAGTCATAACGATTTGAAATAAATAATTAC
66 TATGAACAAAAATAATTGTTTTATGACAAAACAAAAAGTCATAATGATTTGAAATAGATAATTAT
* * * *
19813548 TCAAATAATCATAACTATTTGAACTAGTTTAATAAA-ATGATTTATTTTTTA
131 TCAAATAGTCATAACTATTTGAACTGGTTTAGTAAACA-GAATTATTTTTTA
* * *
19813599 AA--TC--ACTTATTAATTTTTGAAATATTAATAGATTAATATTACTTTATTAT-GAACAAACTT
1 AATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTATT-TCGAACAAGCTT
* * * * *
19813659 ATATGAACAAAAATATTTATTTTATGACAAAACAAAAGGTCATAACGATTTAAAATAGATAATTA
65 ATATGAACAAAAATAATTGTTTTATGACAAAACAAAAAGTCATAATGATTTGAAATAGATAATTA
* * *
19813724 TTTAAATAGTCATAATTAATTGAACTGG-TTAGGTAAACAGAATTATTTTTTA
130 TTCAAATAGTCATAACTATTTGAACTGGTTTA-GTAAACAGAATTATTTTTTA
* * *
19813776 AATCTCTTACTTATTAATTTTTAAAATATTAATAAATTTATTTTATTTTA-TTC--A-AAGC-TA
1 AATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTATTTCGAACAAGCTTA
* * * * * *
19813836 GTATGAATTCAAAAAAAACTTATTTGATGACAAAATAAAATGTCATAATGATTTGAAATAGATAC
66 -TATGAA--CAAAAATAA-TTGTTTTATGACAAAACAAAAAGTCATAATGATTTGAAATAGATAA
* * * * *
19813901 TTGTTCATATAGTCTTAAATATTTGAACTAGTTT
127 TTATTCAAATAGTCATAACTATTTGAACTGGTTT
19813935 GACAAAGAAA
Statistics
Matches: 972, Mismatches: 224, Indels: 73
0.77 0.18 0.06
Matches are distributed among these distances:
176 11 0.01
177 274 0.28
178 81 0.08
179 132 0.14
180 236 0.24
181 233 0.24
182 5 0.01
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.41
Consensus pattern (181 bp):
AATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTATTTCGAACAAGCTTA
TATGAACAAAAATAATTGTTTTATGACAAAACAAAAAGTCATAATGATTTGAAATAGATAATTAT
TCAAATAGTCATAACTATTTGAACTGGTTTAGTAAACAGAATTATTTTTTA
Found at i:19813373 original size:358 final size:352
Alignment explanation
Indices: 19812877--19813933 Score: 1123
Period size: 358 Copynumber: 3.0 Consensus size: 352
19812867 GCATATTTAC
* * *
19812877 TTTTTAAATCTTTTACTAATTAATTTTTTAAATATTAATAAATTAGTATTATTTTATTTTGAACA
1 TTTTTAAATC--TTACTTATTAATTTTTTGAATATTAATAAATTAGTATTA-TTTATTATGAACA
* * * *
19812942 AACTTGTATTAACAAAAACAATTGTTTTATGACAAAACAAAAAGTAATAATGATTTAAAATAGAT
63 AACTTGTATGAACAAAAA-TATTTTTTTATGACAAAACAAAAGGTAATAATGATTTAAAATAGAT
* * * *
19813007 AATTGTTCAAATAGTTATAATTATTTAATTGGTTCAGTAAATAGAATTATTTTCTAAATCTCTTA
127 AATTGTTCAAATAGTCATAATTATTTAACTGGTT-AGTAAACAGAATTATTTTTTAAATCTCTTA
*
19813072 CTTATAAATTTTTGAAATATTAATAAATTAATTTTATTCTATTTCCAATAAGCTTATATGAGCTC
191 CTTAT-AATTTTTGAAATATTAATAAATTAATTTTATTTTATTTCCAA-AAGCTTATATGAG-TC
* * *
19813137 AAATAATTGTTTTATGACAAAATAAAAGTAATAACAATTTGAAATAAATAATTATTCATATAGTC
253 AAAAAATTGTTTTATGACAAAATAAAAGTCATAACGATTTGAAATAAATAATTATTCATATAGTC
* * *
19813202 TTAATTGTTTAAACTGGTTCAACAAACA-GATTCAT
318 TTAACTATTTAAACTAGTTCAACAAA-ATGATTCAT
* * * * *
19813237 TTTTTAAATCTTAGTTATTAATTTTTTGAATATTACTAAATTAGTATTATTTAATTCTGAATAAG
1 TTTTTAAATCTTACTTATTAATTTTTTGAATATTAATAAATTAGTATTATTT-ATTATGAACAAA
* * * * * * *
19813302 CTTGTATGAACAGAAATATTTTTTTATGATAGAACAAAAGGGTTATAATAATTTGAAATAGATAG
65 CTTGTATGAACAAAAATATTTTTTTATGACAAAACAAAA-GGTAATAATGATTTAAAATAGATAA
* * * *
19813367 TTGTTCAAATAGTCATAACTATTTGAGCTGGTTTAGCAAACA-AATTTATTTTTTAAATGTCTTA
129 TTGTTCAAATAGTCATAATTATTT-AACTGG-TTAGTAAACAGAA-TTATTTTTTAAATCTCTTA
* * * * * *
19813431 --T-TAATTCTTGAAATATTAAAAAATTAATATTATTTTATTTCAAAAAAGCTTATATG-TTGAA
191 CTTATAATTTTTGAAATATTAATAAATTAATTTTATTTTATTTC-CAAAAGCTTATATGAGT-CA
* * * * * *
19813492 AAACAATTGTTTTATAACAGAACAATAAGTCATAACGATTTGAAATAAATAATTACTCAAATAAT
254 AAA-AATTGTTTTATGACAAAATAA-AAGTCATAACGATTTGAAATAAATAATTATTCATATAGT
* * * * *
19813557 CATAACTATTTGAACTAGTTTAATAAAATGATTTAT
317 CTTAACTATTTAAACTAGTTCAACAAAATGATTCAT
* *
19813593 TTTTTAAATC--ACTTATTAA-TTTTTGAAATATTAATAGATTAATATTACTTTATTATGAACAA
1 TTTTTAAATCTTACTTATTAATTTTTTG-AATATTAATAAATTAGTATTA-TTTATTATGAACAA
* * *
19813655 ACTTATATGAACAAAAATATTTATTTTATGACAAAACAAAAGGTCATAACGATTTAAAATAGATA
64 ACTTGTATGAACAAAAATATTT-TTTTATGACAAAACAAAAGGTAATAATGATTTAAAATAGATA
* * *
19813720 ATTATTTAAATAGTCATAATTAATTGAACTGGTTAGGTAAACAGAATTATTTTTTAAATCTCTTA
128 ATTGTTCAAATAGTCATAATT-ATTTAACTGGTTA-GTAAACAGAATTATTTTTTAAATCTCTTA
* * *
19813785 CTTATTAATTTTTAAAATATTAATAAATTTATTTTATTTTA-TT-C-AAAGC-TAGTATGAATTC
191 CTTA-TAATTTTTGAAATATTAATAAATTAATTTTATTTTATTTCCAAAAGCTTA-TATG-AGTC
* * * * * *
19813846 AAAAAAAACTTATTTGATGACAAAATAAAATGTCATAATGATTTGAAATAGATACTTGTTCATAT
253 --AAAAAA-TTGTTTTATGACAAAATAAAA-GTCATAACGATTTGAAATAAATAATTATTCATAT
* *
19813911 AGTCTTAAATATTTGAACTAGTT
314 AGTCTTAACTATTTAAACTAGTT
19813934 TGACAAAGAA
Statistics
Matches: 576, Mismatches: 94, Indels: 57
0.79 0.13 0.08
Matches are distributed among these distances:
353 12 0.02
354 132 0.23
355 89 0.15
356 80 0.14
357 91 0.16
358 133 0.23
359 27 0.05
360 12 0.02
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.42
Consensus pattern (352 bp):
TTTTTAAATCTTACTTATTAATTTTTTGAATATTAATAAATTAGTATTATTTATTATGAACAAAC
TTGTATGAACAAAAATATTTTTTTATGACAAAACAAAAGGTAATAATGATTTAAAATAGATAATT
GTTCAAATAGTCATAATTATTTAACTGGTTAGTAAACAGAATTATTTTTTAAATCTCTTACTTAT
AATTTTTGAAATATTAATAAATTAATTTTATTTTATTTCCAAAAGCTTATATGAGTCAAAAAATT
GTTTTATGACAAAATAAAAGTCATAACGATTTGAAATAAATAATTATTCATATAGTCTTAACTAT
TTAAACTAGTTCAACAAAATGATTCAT
Found at i:19816076 original size:111 final size:110
Alignment explanation
Indices: 19815887--19816089 Score: 275
Period size: 111 Copynumber: 1.8 Consensus size: 110
19815877 ATTTTCTTTT
* * * * *
19815887 GTCATAAAATAATTGTTTTGTTCGTACAAGCTTATTCAAATTAAAATAATACTAATTTAATAATA
1 GTCATAAAACAAATGTTTTGTTCATAAAAGCTTATTCAAATTAAAATAATACTAATTTAATAACA
*
19815952 TTTCAAAAATTAATAAGTAAGAGATTTCTTCTAACCTTTTGTTGA
66 TTTCAAAAATTAATAAGAAAGAGATTTCTTCTAACCTTTTGTTGA
* * *
19815997 GTCATAAAACAAATGTTTTAGTTCATAAAAGCTTATTTAGAA-TAAATTAATACTAATTTACTAA
1 GTCATAAAACAAATGTTTT-GTTCATAAAAGCTTATTCA-AATTAAAATAATACTAATTTAATAA
*
19816061 CA-TTCAGAAATTTAATAAGAAAGAGATTT
64 CATTTCA-AAAATTAATAAGAAAGAGATTT
19816090 AAAAAATAAA
Statistics
Matches: 80, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
110 21 0.26
111 57 0.71
112 2 0.03
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.38
Consensus pattern (110 bp):
GTCATAAAACAAATGTTTTGTTCATAAAAGCTTATTCAAATTAAAATAATACTAATTTAATAACA
TTTCAAAAATTAATAAGAAAGAGATTTCTTCTAACCTTTTGTTGA
Found at i:19816502 original size:181 final size:180
Alignment explanation
Indices: 19816202--19816973 Score: 460
Period size: 181 Copynumber: 4.3 Consensus size: 180
19816192 GTTTCAGTTA
** * ** *
19816202 ATACAAGCTTAGACAGAATAAAATAATAGTAATTTATTAATATTTCCTAAATTAATAAGTAATAA
1 ATACAAGCTTATTCA-AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAACAA
* ** **
19816267 ATTTAAATAATAAA-CATGTTTACCGAATTAGTTAAAATAATTATTGCCATTTGAATGATTATCT
65 ATTTAAAAAATAAATC-TGTTTACCGAACGAGTTAAAATAATTATTGCCATTTGAACAATTATC-
** ** * *
19816331 AAT-TCAAATTGTTATTACCTTTT-TTATTGTTACAAAACAATTATTTTTTATC
128 AATCTCAAATCATTAAAACCTTTTGTT-TTGTTACAAAACAATTATTTATAATC
* * * **
19816383 ATACAAGTTTATTTGAAATAAAATAATATTAATGGATTAATATTTCAAAAATTAATAAGTAACAA
1 ATACAAGCTTA-TTCAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAACAA
* ** * * * **
19816448 ATTTAAACAATAAATCTGTTTATTGAACCGA-TTCAAGTAGTTA-TGATTATTTGAACAATTATC
65 ATTTAAAAAATAAATCTGTTTACCGAA-CGAGTTAAAATAATTATTG-CCATTTGAACAATTATC
*
19816511 AATCTCAAATCATTAAAACCTTTTGTTTTGTTATAAAACAATTATTTATAATC
128 AATCTCAAATCATTAAAACCTTTTGTTTTGTTACAAAACAATTATTTATAATC
* ** * * * *
19816564 ATAGAAGCTTATTCAGTTAAAAATAATACTAATTTAATAATATTTCAAAAACTAATAAGTAAGAT
1 ATACAAGCTTATTCAAAT-AAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAACAA
* * * * * * * *** * * * *
19816629 ATTTAAAAAATTAATGTGTTTGCCAAACCAGTTTAAATAGTTAAAACTATTAGAATAATTATCTA
65 ATTTAAAAAATAAATCTGTTTACCGAACGAGTTAAAATAATTATTGCCATTTGAACAATTATCAA
* ** * * * * * *
19816694 TTTCAAATTGC-TTTGAACC-TTTGTTTAGTCATAAAATATTTTTTTCAT-ATC
130 TCTCAAA-T-CATTAAAACCTTTTGTTTTGTTACAAAACAATTATTT-ATAATC
* ** * * * *
19816745 TTAC-AGACTTATTTGGAATAAAATAATCCAAATTTATTAACA-TTCAAAAAATTAATAAGCAA-
1 ATACAAG-CTTA-TTCAAATAAAATAATACTAATTTATTAATATTTC-AAAAATTAATAAGTAAC
* ** * * ** * * *
19816807 AAACTTTAAAAAAATGAATCTGTTTACCGAATAAATTTAAATAGGTA-TGACACTCGAACAATTA
63 AAA-TTT-AAAAAATAAATCTGTTTACCGAACGAGTTAAAATAATTATTGCCATTTGAACAATTA
** * * * * * * *
19816871 TTTAT-TTAAATCGTTATAACCTTTTGTTTTGATATAAAACAATTGTTTCA-ATTC
126 TCAATCTCAAATCATTAAAACCTTTTGTTTTGTTACAAAACAATTATTT-ATAATC
*
19816925 AT-CAAAGCTTA-TCTAAATTAAAATAATACTAATTTCTTAATATTTCAAA
1 ATAC-AAGCTTATTC-AAA-TAAAATAATACTAATTTATTAATATTTCAAA
19816974 GAGTTTAAAA
Statistics
Matches: 455, Mismatches: 111, Indels: 51
0.74 0.18 0.08
Matches are distributed among these distances:
178 2 0.00
179 10 0.02
180 74 0.16
181 320 0.70
182 48 0.11
183 1 0.00
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39
Consensus pattern (180 bp):
ATACAAGCTTATTCAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAACAAA
TTTAAAAAATAAATCTGTTTACCGAACGAGTTAAAATAATTATTGCCATTTGAACAATTATCAAT
CTCAAATCATTAAAACCTTTTGTTTTGTTACAAAACAATTATTTATAATC
Found at i:19817612 original size:180 final size:182
Alignment explanation
Indices: 19817164--19817644 Score: 528
Period size: 179 Copynumber: 2.7 Consensus size: 182
19817154 ATTTAAAAAG
* * * *
19817164 TGAATCTATTTATTTATTTCAAATCGTTATGACTTTTTGTTTTGTCATAAACCAATTATTTCTGT
1 TGAA-CTAGTTATTTATTTCAAATCGTTATAACTTTTTGTTTTGTCATAAAACAATTATTTCTAT
* * * *
19817229 TTATACAAGTTTATTCATAATAAAATAATATTAATTTATTAAAATTTCAAAAGTTAATAAGTAAA
65 TCATACAAGTTTATTCAAAATAAAATAATATTAATTTATTAATATATCAAAAGTTAATAAGTAAA
* * * * ** * *
19817294 AGATTTAAAAAATAAATCTGTATACCGAGCGAGTTCAACTAGTTATGATTATT
130 AGACTTAAAAAATAAATCTATATACCGAACAAGTTCAAAAAGTCATGATAATT
* * * *
19817347 TGAAC-AGTTATTTATTTCAAATCATTA-AA-TTTTTATTTTGTCATAAAACAATTGTTTCTACT
1 TGAACTAGTTATTTATTTCAAATCGTTATAACTTTTTGTTTTGTCATAAAACAATTATTTCTATT
* ** **
19817409 CATACAAGTTTATTCAAAATAAAATAATACTAATTTATTAATATAAT-AAAA-TTAATGGGATGG
66 CATACAAGTTTATTCAAAATAAAATAATATTAATTTATTAATAT-ATCAAAAGTTAATAAG-TAA
* * * * *
19817472 AA-ACTTAAAAAATTAGTCTATTTATCGAACAAGTTGAAAAAGTCATG-TCAATT
129 AAGACTTAAAAAATAAATCTATATACCGAACAAGTTCAAAAAGTCATGAT-AATT
* * *
19817525 TGAACTA-TTATTTATTTCAAATCGTTATAACATTTTGTTTTGTCATAAAATAATTATTTTTATT
1 TGAACTAGTTATTTATTTCAAATCGTTATAACTTTTTGTTTTGTCATAAAACAATTATTTCTATT
** * * *
19817589 CATACAAAATTATTCAGAATAAAATAATATTAATTTATTAATATTTCAAAAATTAA
66 CATACAAGTTTATTCAAAATAAAATAATATTAATTTATTAATATATCAAAAGTTAA
19817645 AGATCGTAAA
Statistics
Matches: 248, Mismatches: 42, Indels: 18
0.81 0.14 0.06
Matches are distributed among these distances:
177 1 0.00
178 66 0.27
179 79 0.32
180 73 0.29
181 24 0.10
182 1 0.00
183 4 0.02
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.42
Consensus pattern (182 bp):
TGAACTAGTTATTTATTTCAAATCGTTATAACTTTTTGTTTTGTCATAAAACAATTATTTCTATT
CATACAAGTTTATTCAAAATAAAATAATATTAATTTATTAATATATCAAAAGTTAATAAGTAAAA
GACTTAAAAAATAAATCTATATACCGAACAAGTTCAAAAAGTCATGATAATT
Found at i:19822983 original size:17 final size:18
Alignment explanation
Indices: 19822958--19822995 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
19822948 AATTGCTTTG
19822958 TTATAAGATTGCC-TATA
1 TTATAAGATTGCCTTATA
*
19822975 TTATTAGATTGCCTTATA
1 TTATAAGATTGCCTTATA
19822993 TTA
1 TTA
19822996 CTTTCTAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.47
Consensus pattern (18 bp):
TTATAAGATTGCCTTATA
Found at i:19823456 original size:180 final size:180
Alignment explanation
Indices: 19823142--19824078 Score: 796
Period size: 180 Copynumber: 5.2 Consensus size: 180
19823132 GGTTACAGTG
* * * *
19823142 ATTTGAAATAGATAATTATTCAAACAGTCATGACTATTTGAACTTGTTCATAAAACAAATTTATT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTAT-AAACAAATTTACT
* * *
19823207 TTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATTAATATTATTTTAATCCAAAAAA
65 TTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATCTAAATAA
* *
19823272 GCTTGTATAAATAGAAATAATTGTTTTATGATAAAATAAAAAGTCATAGTA
130 GCTTGTATAAATAGAAATAATTGTTTTATGATAAAACAAAAAGTCATAGCA
* * * ** * *
19823323 ATTTGAAATAAATAATTGTTCAAATAGTGATAAAGATTTGAACTTGTTTATGAACAGATTTACTT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTATAAACAAATTTACTT
**** * *
19823388 TTTAAATCTTTTACTTATTAATTGTGTTTATATTAATAAATTTA-TATTATTTTATTATAAATAA
66 TTTAAATCTTTTACTTATTAATTGTCAAAATATTAATAAA-TTAGTATTATTTTAATCTAAATAA
* * ** * * *
19823452 GCTTGTATGAATAGAAAAAATCATTTTATGACAAAACAAAAAGTTATAGCG
130 GCTTGTATAAATAGAAATAATTGTTTTATGATAAAACAAAAAGTCATAGCA
* * * ** * * *
19823503 ATTTCAAATAGATAATTATTAAAATAGTCATAATTATTT-ATACTTGTTGGGTAAACAGATTCAT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGA-ACTTGTT-TATAAACAAATTTAC
* * * * * * * *
19823567 TTTTTAAATCTCTTAATTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTTGAATA
64 TTTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATCTAAATA
* * * *
19823632 AGCTTATATAAACT-GAAATAATT-TTTTATGATAAAACAAAATGTCATAACG
129 AGCTTGTATAAA-TAGAAATAATTGTTTTATGATAAAACAAAAAGTCATAGCA
* * * * * * *
19823683 ATTTCAAATAGATATTTATTCAAATAGTCATGACTATTTGATCTAGTTCAATAAACATATTTACT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTT-TATAAACAAATTTACT
* * * *
19823748 TTTGAAATTTTTTACTTATTAATTATCAAAATATTAATAAATTAGTATTATTTTAATCTTAATAA
65 TTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATCTAAATAA
* * * *
19823813 GCTTGTATGAACTTA-AACT-ATTGTTTTATAATAGAA-AAAAA-T-A-A-CA
130 GCTTGTAT-AA-ATAGAAATAATTGTTTTATGATAAAACAAAAAGTCATAGCA
* ** * *
19823859 ATTTGAAATAAATAATTGCTCAAATAATCATAACTATTTGAA-TTGGTTTGGTAAACAAATTTAC
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTT-GTTT-ATAAACAAATTTAC
* * * * * *
19823923 TTTTTATATCTTTTA-TTAATT--TT-T-GAAATATTAATAGATTAGTATT-TTTTATTCCAAAC
64 TTTTTAAATCTTTTACTT-ATTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATCTAAAT
** * * * * * * ** * ***
19823982 AAATTTATATGAACAAAAACATTTGTTTTATGGCAAAAC-AAAAGATTATAATG
128 AAGCTTGTATAAATAGAAATAATTGTTTTATGATAAAACAAAAAG-TCATAGCA
* * * *
19824035 ATTTAAAATAGATAATTGTTCAAATAGTCATAATTATTTAAACT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACT
19824079 AGTTAAGCAA
Statistics
Matches: 606, Mismatches: 128, Indels: 48
0.77 0.16 0.06
Matches are distributed among these distances:
169 1 0.00
170 3 0.00
171 32 0.05
172 20 0.03
173 2 0.00
174 3 0.00
175 4 0.01
176 101 0.17
177 2 0.00
178 1 0.00
179 2 0.00
180 291 0.48
181 143 0.24
182 1 0.00
ACGTcount: A:0.42, C:0.07, G:0.08, T:0.42
Consensus pattern (180 bp):
ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTATAAACAAATTTACTT
TTTAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATCTAAATAAG
CTTGTATAAATAGAAATAATTGTTTTATGATAAAACAAAAAGTCATAGCA
Found at i:19823787 original size:361 final size:361
Alignment explanation
Indices: 19823123--19823823 Score: 854
Period size: 361 Copynumber: 1.9 Consensus size: 361
19823113 TGAAATTACG
* * * * *
19823123 AAAACAAAAGGTTACAGTGATTTGAAATAGATAATTATTCAAACAGTCATGACTATTTGAACTTG
1 AAAACAAAAAGTTACAGCGATTTCAAATAGATAATTATTAAAACAGTCATAACTATTTGAACTTG
* * *
19823188 TTCATAAAACAAATTTATTTTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATTAAT
66 TTCATAAAACAAATTCATTTTTTAAATCTCTTAATTATTAATTGTCAAAATATTAATAAATTAAT
* *
19823253 ATTATTTTAATCCAAAAAAGCTTGTATAAATAGAAATAATTGTTTTATGATAAAATAAAAAGTCA
131 ATTATTTTAATCCAAAAAAGCTTATATAAATAGAAATAATTGTTTTATGATAAAACAAAAAGTCA
** * * * * * *
19823318 TAGTAATTTGAAATAAATAATTGTTCAAATAGTGATAAAGATTTGAACTTGTTTATGAACAGATT
196 TAACAATTTCAAATAAATAATTATTCAAATAGTCATAAAGATTTGAACTAGTTAATAAACAGATT
* * **** *
19823383 TACTTTTTAAATCTTTTACTTATTAATTGTGTTTATATTAATAAATTTA-TATTATTTTATTATA
261 TACTTTTGAAATCTTTTACTTATTAATTATCAAAATATTAATAAA-TTAGTATTATTTTAATATA
19823447 AATAAGCTTGTATGAATAGAAAAAATCATTTTATGAC
325 AATAAGCTTGTATGAATAGAAAAAATCATTTTATGAC
* * *
19823484 AAAACAAAAAGTTATAGCGATTTCAAATAGATAATTATTAAAATAGTCATAATTATTT-ATACTT
1 AAAACAAAAAGTTACAGCGATTTCAAATAGATAATTATTAAAACAGTCATAACTATTTGA-ACTT
** * * * *
19823548 GTTGGGT-AAACAGATTCATTTTTTAAATCTCTTAATTATTAATTTTTAGAATATTAATAAATTA
65 GTT-CATAAAACAAATTCATTTTTTAAATCTCTTAATTATTAATTGTCAAAATATTAATAAATTA
* * *** * *
19823612 GTATTATTTTATTTTGAATAAGCTTATATAAACT-GAAATAATT-TTTTATGATAAAACAAAATG
129 ATATTATTTTAATCCAAAAAAGCTTATATAAA-TAGAAATAATTGTTTTATGATAAAACAAAAAG
* * * * ** *
19823675 TCATAACGATTTCAAATAGATATTTATTCAAATAGTCATGACTATTTGATCTAGTTCAATAAACA
193 TCATAACAATTTCAAATAAATAATTATTCAAATAGTCATAAAGATTTGAACTAGTT-AATAAACA
* *
19823740 TATTTACTTTTGAAATTTTTTACTTATTAATTATCAAAATATTAATAAATTAGTATTATTTTAAT
257 GATTTACTTTTGAAATCTTTTACTTATTAATTATCAAAATATTAATAAATTAGTATTATTTTAAT
* *
19823805 CTTAATAAGCTTGTATGAA
322 ATAAATAAGCTTGTATGAA
19823824 CTTAAACTAT
Statistics
Matches: 283, Mismatches: 52, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
360 65 0.23
361 216 0.76
362 2 0.01
ACGTcount: A:0.42, C:0.07, G:0.09, T:0.42
Consensus pattern (361 bp):
AAAACAAAAAGTTACAGCGATTTCAAATAGATAATTATTAAAACAGTCATAACTATTTGAACTTG
TTCATAAAACAAATTCATTTTTTAAATCTCTTAATTATTAATTGTCAAAATATTAATAAATTAAT
ATTATTTTAATCCAAAAAAGCTTATATAAATAGAAATAATTGTTTTATGATAAAACAAAAAGTCA
TAACAATTTCAAATAAATAATTATTCAAATAGTCATAAAGATTTGAACTAGTTAATAAACAGATT
TACTTTTGAAATCTTTTACTTATTAATTATCAAAATATTAATAAATTAGTATTATTTTAATATAA
ATAAGCTTGTATGAATAGAAAAAATCATTTTATGAC
Found at i:19824469 original size:166 final size:169
Alignment explanation
Indices: 19824279--19824917 Score: 474
Period size: 178 Copynumber: 3.7 Consensus size: 169
19824269 ATATTATTAT
*
19824279 ATTAGTATTATTTTATTTCAAATAAACTTGTATGAACATAAATAATTGTTTTATGACAGAATAAA
1 ATTAGTATTATTTTATTTCAAATAAACTTGTATGAACATAAATAATTGTTTTATGACA-AACAAA
* * * * * *
19824344 AGATTATAATGATTTGAAGTATATAATTATTCAAATAGTTATAACTATTT-AAATTGGT-TCGAT
65 AGGTTATAATGATTT-AAATAGATAATTGTTCAAATAGTCATAACTATTTAAAATTGGTATAGAT
19824407 AAAC-ATCT-ATCACTTATT-AATTTTTGAAAGATTAATAA
129 AAACTATCTAATCACTTATTAAATTTTTGAAAGATTAATAA
* * * * * *
19824445 ATTACTATTATTTTATTCCAAATAAACTTGTACGATCA-AAAGCAATTGTTATATGACCAAACAA
1 ATTAGTATTATTTTATTTCAAATAAACTTGTATGAACATAAA-TAATTGTTTTATGA-CAAACAA
* * * *
19824509 AAGGTAATAATGATTTAAAATAGATAATTGTTGAAAT-GACCATAATTATTTAAACTCACTTGGT
64 AAGGTTATAATGATTT-AAATAGATAATTGTTCAAATAG-TCATAACTATTTAAA---A-TTGGT
** * * * *
19824573 AAATAGATTCACTTTTTAAATCACTTATTAAATTTTTGGAATATTAATAA
123 --ATAGATAAACTATCT-AATCACTTATTAAATTTTTGAAAGATTAATAA
* * * *
19824623 ATCAGTATCATTTTATTTCAAATAAACTTGTATGAAC-TAAAATAATTGTTTTGTAACAAAACAA
1 ATTAGTATTATTTTATTTCAAATAAACTTGTATGAACAT-AAATAATTGTTTTATGAC-AAACAA
* * * * * *
19824687 AAGGTTATAACGATTTTCAATAGATAATTGTTCAAATAGTCGTAACTATTTGAAATT-GTTTGGT
64 AAGGTTATAATGA-TTTAAATAGATAATTGTTCAAATAGTCATAACTATTTAAAATTGGTATAG-
* * * * *
19824751 AAAAAATTTTATTTTTTAAACTCTTACTTATT-AATTTTTGAAATATTAAGAA
127 -ATAAA--CTA---TCT-AA-TC--ACTTATTAAATTTTTGAAAGATTAATAA
*** * * * *
19824803 ATTAGTATTATTTTATTTTGGATAAGCTTTTATGAAC-TGAAAAAATTATTTTATGTTA-AAACA
1 ATTAGTATTATTTTATTTCAAATAAACTTGTATGAACAT-AAATAATTGTTTTATG--ACAAACA
* * * *
19824866 AAAGGTCATAATGATTTTAAATAAATAATTATTCAAATAGTCACAACTATTT
63 AAAGGTTATAATGA-TTTAAATAGATAATTGTTCAAATAGTCATAACTATTT
19824918 GAACTTGTTT
Statistics
Matches: 371, Mismatches: 70, Indels: 50
0.76 0.14 0.10
Matches are distributed among these distances:
165 4 0.01
166 89 0.24
167 4 0.01
170 1 0.00
171 7 0.02
173 4 0.01
174 8 0.02
175 4 0.01
177 11 0.03
178 111 0.30
179 9 0.02
180 111 0.30
181 7 0.02
182 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (169 bp):
ATTAGTATTATTTTATTTCAAATAAACTTGTATGAACATAAATAATTGTTTTATGACAAACAAAA
GGTTATAATGATTTAAATAGATAATTGTTCAAATAGTCATAACTATTTAAAATTGGTATAGATAA
ACTATCTAATCACTTATTAAATTTTTGAAAGATTAATAA
Found at i:19824752 original size:178 final size:175
Alignment explanation
Indices: 19824415--19825013 Score: 558
Period size: 180 Copynumber: 3.3 Consensus size: 175
19824405 ATAAACATCT
* * * *
19824415 ATCACTTATTAATTTTTGAAAGATTAATAAATTACTATTATTTTATTCCAAATAAACTTGTACGA
1 ATCACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAACTTGTATGA
* * * * *
19824480 TC-AAAAGCAATTGTTATATGACCAAACAAAAGGTAATAATGATTTAAAATAGATAATTGTTGAA
66 ACTAAAA--AATTGTTTTATGACAAAACAAAAGGTAATAATGATTTTAAATAGATAATTGTTCAA
* * ***
19824544 AT-GACCATAATTATTT-AAACTCACTTGGTAAATAGATTCACTTTTTAA
129 ATAG-TCATAACTATTTGAAA-TTGTTTGGTAAA-AGATTCACTTTTTAA
* * *
19824592 ATCACTTATTAAATTTTTGGAATATTAATAAATCAGTATCATTTTATTTCAAATAAACTTGTATG
1 ATCACTTATT-AATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAACTTGTATG
* * * * *
19824657 AACTAAAATAATTGTTTTGTAACAAAACAAAAGGTTATAACGATTTTCAATAGATAATTGTTCAA
65 AACTAAAA-AATTGTTTTATGACAAAACAAAAGGTAATAATGATTTTAAATAGATAATTGTTCAA
* * * *
19824722 ATAGTCGTAACTATTTGAAATTGTTTGGTAAAAAATTTTATTTTTTAA
129 ATAGTCATAACTATTTGAAATTGTTTGGTAAAAGA-TTCACTTTTTAA
* *** * *
19824770 ACTCTTACTTATTAATTTTTGAAATATTAAGAAATTAGTATTATTTTATTTTGGATAAGCTTTTA
1 A-TC--ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAACTTGTA
* ** * * *
19824835 TGAACTGAAAAAATTATTTTATGTTAAAACAAAAGGTCATAATGATTTTAAATAAATAATTATTC
63 TGAACT-AAAAAATTGTTTTATGACAAAACAAAAGGTAATAATGATTTTAAATAGATAATTGTTC
* * * *
19824900 AAATAGTCACAACTATTTGAACTTGTTTGGTAAAGAGATTTA-TTTCATCAA
127 AAATAGTCATAACTATTTGAAATTGTTTGGTAAA-AGATTCACTTT--TTAA
** * * * * *
19824951 ATTTTTTGCTTATTAATTTTTCAAATGTTAATAAATTTGGATTATTTTATTCCAAATAAACTT
1 A----TCACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAACTT
19825014 AATAAATAGT
Statistics
Matches: 343, Mismatches: 64, Indels: 25
0.79 0.15 0.06
Matches are distributed among these distances:
177 12 0.03
178 127 0.37
179 13 0.04
180 128 0.37
181 17 0.05
182 45 0.13
184 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.42
Consensus pattern (175 bp):
ATCACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAACTTGTATGA
ACTAAAAAATTGTTTTATGACAAAACAAAAGGTAATAATGATTTTAAATAGATAATTGTTCAAAT
AGTCATAACTATTTGAAATTGTTTGGTAAAAGATTCACTTTTTAA
Found at i:19826117 original size:181 final size:178
Alignment explanation
Indices: 19825770--19833645 Score: 4469
Period size: 181 Copynumber: 44.0 Consensus size: 178
19825760 GGGATACCAT
* * * * *** *
19825770 TATGAACAAAAAAAATAGTTTTATGACAAAAAAAAAATGTTGCAATGATTTGAAATAGATAATCA
1 TATGAAC-AAAACAATTGTTTTATGAC-AAAACAAAAGGTCATAATGATTTGAAATAGATAATTA
* * * * * **
19825835 TTCATATAGTC-TCAACTATTTGAAC-TGATTCAGTAATTAGATTTATTTTTTAATTTTCTTGGT
64 TTCAAATAGTCAT-AACTATTTGAACTTG-TTCGGTAAATAGATTTATTTTTTAAATCTCTTACT
* * *
19825898 TA-TAAGTTTTGAAATATTATTAAATTAGTATTATTTTATTATAAATAACATAG
127 TATTAA-TTTTTAAATATTAATAAATTAGTATTATTTTATTATAAATAAC-TTG
* * * * *
19825951 TATGAACAAAACCGATTGTTTGATAACAAAATAAAAGGTTATAATGATTTGAAATAGATAATTAT
1 TATGAACAAAA-CAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * * * * * *
19826016 TCAAATAGTCAAAACTATTTGAAATGGTTTGGTAAATAGTTTTACTTTTTAAATCTCTTAGTAAT
65 TCAAATAGTCATAACTATTTGAACTTGTTCGGTAAATAGATTTATTTTTTAAATCTCTTACTTAT
* *
19826081 TAATTTTCTAAATATTAATAAATTAGTATTATTTTATTTTGAACA-AACTTA
130 TAATTTT-TAAATATTAATAAATTAGTATTATTTTATTAT-AA-ATAACTTG
* * * * * * **
19826132 TATTAACAAAAACAATTATTTTGTGACAAAATAAAAAGTAATAATGATTTGAAATAGATAATTGC
1 TATGAAC-AAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * * * * * **
19826197 TCAAATAATTATAATTATTTGAACTGGTTCAGT-AATAAAATTATTTCCTAAATCTCTTA--TA-
65 TCAAATAGTCATAACTATTTGAACTTGTTCGGTAAATAGATTTATTTTTTAAATCTCTTACTTAT
* * *
19826258 -AATTTTTGAAATATTAATAAATTAGTTTTACTTTATTCTAAATAAGCTTG
130 TAATTTTT-AAATATTAATAAATTAGTATTATTTTATTATAAATAA-CTTG
* * * * * * ** * *
19826308 AATGAGCTGAAATAATTGTTTTATGATAAAACAAAAAGTCATAACAATTTAAAATAAATAATTAT
1 TATGAAC-AAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * ** * * *
19826373 TCATATAGTCTTAACTGTTTGAA-TTGATTCGACAAACAGATTTATTTTTTAAATCTTTTAGTTA
65 TCAAATAGTCATAACTATTTGAACTTG-TTCGGTAAATAGATTTATTTTTTAAATCTCTTACTTA
*** * **
19826437 TTAA-TGGCATAATATTACTAAATTAGTATTATTTTATTACGAATAAGCTTG
129 TTAATTTTTA-AATATTAATAAATTAGTATTATTTTATTATAAATAA-CTTG
* * * * * * ** *
19826488 TATAAATAGAAACAATTGTTTTATTATAGAACAAAAGGTTATAACAATTTGAAATAGATAATTGT
1 TATGAACA-AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* ** *
19826553 TCAAATAGTCATAACTATTT-AAATTGGTTTTGTAAATAGATTTATTTTTTCAA--TCTT--TTA
65 TCAAATAGTCATAACTATTTGAACTT-GTTCGGTAAATAGATTTATTTTTTAAATCTCTTACTTA
* * *
19826613 TTAATTCTTGAAATATTAGTAAATTAGTATTATTTTATTACAAATAAGCTTG
129 TTAATT-TTTAAATATTAATAAATTAGTATTATTTTATTATAAATAA-CTTG
* * * * * **
19826665 TATGTTGA-AAAATAATTGTTTTATCACAAATCAAAAGGTAATAACAATTTGAAATAGATAATT-
1 TATG--AACAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTA
* * * * * *
19826728 TTCAAATGGCCATAATTATTTGAACTTATTCAGTAAACT-GATTTATTTTTTAAATCTCTTACAT
64 TTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAA-TAGATTTATTTTTTAAATCTCTTACTT
** * * * * ** *
19826792 ATTAACTTTCGAAATAATAATAAAGTAGTATTATTTTCTTTTGGATAAGCTTT
128 ATTAA-TTTTTAAATATTAATAAATTAGTATTATTTTATTATAAATAA-CTTG
* * * * *
19826845 TATGAACTAAAACAATTATTTTATGACTAAACAAAAGGTCAAAATGATTTGAAATAAATAATTGT
1 TATGAAC-AAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * * * * *
19826910 TC-AATAGTCTTAACTATTTGAACTGGTTTGGT-AA-ACA--CA-TTTTTCAATCTATTACTTAT
65 TCAAATAGTCATAACTATTTGAACTTGTTCGGTAAATAGATTTATTTTTTAAATCTCTTACTTAT
* ** * * * *
19826969 TAA-TTTTAGAATATTATTAGTTTAGCAATATTTTACTT-TGAATAAGTTTG
130 TAATTTTTA-AATATTAATAAATTAGTATTATTTTA-TTATAAATAA-CTTG
* * **
19827019 TATGAACATAAACAATTGCTTTATGACAAAAC-AAAGATCATAACAATTT-AAGATAGATAATTA
1 TATGAACA-AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAA-ATAGATAATTA
* * * * * * *
19827082 TTTAAATAGCCATAACAATTTGAACTAG-TCTAGTAAATAGAGTTAGTTTTTAAATCTC--A--T
64 TTCAAATAGTCATAACTATTTGAACTTGTTC-GGTAAATAGATTTATTTTTTAAATCTCTTACTT
* * * * *
19827142 AGTAATTTTTGAAATATTAATAAACTAATATTATTTTATTCTAAATAATTTTG
128 ATTAATTTTT-AAATATTAATAAATTAGTATTATTTTATTATAAATAA-CTTG
* * * * *
19827195 TATGAATAAAAACAAATGTTTTATGACAAAACAAAATGTCATAACGATTTGTAATAGATAA-TAG
1 TATGAA-CAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTA-
* * * ** * * * * * * ** *
19827259 TTCAAATGGAT-ATGACTTTTTGAACTTGTTCAATAAACATACTAATTTTTTAAGTTTCCAACTC
64 TTCAAATAG-TCATAACTATTTGAACTTGTTCGGTAAATAGATTTATTTTTTAAATCTCTTACTT
* * * *
19827323 ATTAA-TTTTATTATATTAATAAACTAGTATTATTTTATTTTGAATAAACTTG
128 ATTAATTTTTA-AATATTAATAAATTAGTATTATTTTATTATAAAT-AACTTG
* * * * ** * * * * *
19827375 TTTGAAAAGAAATAATTGTTTTATGACAAAATAAAAATTTATAATGGTTTGAAATAAATAACTGT
1 TATGAACA-AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * * * * * * * *
19827440 TCAAATAATCATAATTAGTTAAATTTGCTGGGTAAACAGATTTATTTTTTTAAATCTTTTATTTA
65 TCAAATAGTCATAACTATTTGAACTTGTTCGGTAAATAGATTTA-TTTTTTAAATCTCTTACTTA
* * * **
19827505 TTAACTTTTAAAATTTTAATAAATTAATATTATTTTATTACGAATAAACTTG
129 TTAA-TTTTTAAATATTAATAAATTAGTATTATTTTATTATAAAT-AACTTG
**
19827557 TATGAACAGAAACAATT-TGTTTATGACAAAACAAAAAATCATAATGATTTGAAATAGATAATTG
1 TATGAACA-AAACAATTGT-TTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATT-
* * * * ** * * * *
19827621 CTT-AAATAGTTACAACTATTTGAACTAGTTAAGAAAACATATTTATTTTTTAAAT-TTTTACTT
63 ATTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAATAGATTTATTTTTTAAATCTCTTACTT
* *
19827684 ATTAATTTTTGAAATTTTAATAAATTTA-TATTATTTTATTCA-ACATAAGCTTG
128 ATTAATTTTT-AAATATTAATAAA-TTAGTATTATTTTATT-ATAAATAA-CTTG
* * * * * * *
19827737 CATAAATAGAACCAATTGTTTTAAGACAAAACAGAAGGTCATAATGTTTTGAAATAGATAATTAT
1 TATGAACA-AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * * * *
19827802 TTAGATAATCATAACTATTTGAACTTGTTCGGTAAACAGATTCT-TTTTTTAATTCTCTTACTCA
65 TCAAATAGTCATAACTATTTGAACTTGTTCGGTAAATAGATT-TATTTTTTAAATCTCTTACTTA
* * **
19827866 TTAATTTTTGAAATATTAATAAATTAGTTTTATTTTACTT-CAAATAAGCTCA
129 TTAATTTTT-AAATATTAATAAATTAGTATTATTTTA-TTATAAATAA-CTTG
** * * * * *
19827918 TATGAATTGAAATAATTGTTTTATTATAAAAGAAAAGGTCATAATGATTTGATATAGATAATTAT
1 TATGAA-CAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * ** * *
19827983 TTAAATAGTCATGACTATTTGAACTTGTTCGACAAATAAATTTATTTTTTAAATCTGTTACTTAT
65 TCAAATAGTCATAACTATTTGAACTTGTTCGGTAAATAGATTTATTTTTTAAATCTCTTACTTAT
** * ** *
19828048 TAATTGTCAAAATATTAATAAATTA-TAATTATTTTAATCCAAATAAATTTG
130 TAATT-TTTAAATATTAATAAATTAGT-ATTATTTTATTATAAAT-AACTTG
* * * ** * * * *
19828099 TATGAATAGAAACAATTGTATTATGACAAAACAAAAAAGTCATAACAAGTTGAACTAAATAATTG
1 TATGAACA-AAACAATTGTTTTATGACAAAAC-AAAAGGTCATAATGATTTGAAATAGATAATTA
* * * * * *
19828164 CTCAAATAGTCATAA-TGATTTGAACTTGTTCGATAAACATATAT-TTTTTTAAATCTTTTACTT
64 TTCAAATAGTCATAACT-ATTTGAACTTGTTCGGTAAATAGATTTATTTTTTAAATCTCTTACTT
* * *
19828227 ATTAATTGTCTT-CATATTAATAAATTTGTATTATTTTATTGA-AAATAAGCTTC
128 ATTAATT-T-TTAAATATTAATAAATTAGTATTATTTTATT-ATAAATAA-CTTG
* * * * * * * * * *
19828280 TATTAACTGAAACAATTATTTTATTACAAATCAAAAGTTTATAA-GATTT-TAATAGACAATTGT
1 TATGAAC-AAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * * * *
19828343 TCAAATAGTAATAACTATTTGAACTTATTCAGCAAACAGATTTATTTTTTAAAATCTCTTTCTTA
65 TCAAATAGTCATAACTATTTGAACTTGTTCGGTAAATAGATTTATTTTTT-AAATCTCTTACTTA
* * * * * *
19828408 TTAATGTTTTGAATGTTAATAAATTAATATTAATTTATTTTGAATAAGCTTG
129 TTAAT-TTTTAAATATTAATAAATTAGTATTATTTTATTATAAATAA-CTTG
* * * * *
19828460 TATGAACTGAAACAATTGTTTTATAACTAAACAAAAGGTCAAAATAATTTGAAATAGATAATTAT
1 TATGAAC-AAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * * *
19828525 TCTAATAGTCTTAACCATTTGAA-TTAATTTGGT-AA-A-ATTTATTTTTTAAATCTCTTACTTA
65 TCAAATAGTCATAACTATTTGAACTT-GTTCGGTAAATAGATTTATTTTTTAAATCTCTTACTTA
* * * *
19828586 TTAACTTTTAAACTATTATTAAATGT-GTATTATTTTAATCTAAATAAACTTG
129 TTAATTTTTAAA-TATTAATAAAT-TAGTATTATTTTATTATAAAT-AACTTG
* * * * ** * **
19828638 TACGAACAAAACAATTGTTTTACGA-AAATATAAAAAGTCATAACAATTTGAAATAAATAATCGT
1 TATGAACAAAACAATTGTTTTATGACAAA-ACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * ** * * * * **
19828702 TCATATAGTCTTAACTATTTGAACTTATTCGACAATTAAATTTATTTTTTAATTTTCTTGGTTAT
65 TCAAATAGTCATAACTATTTGAACTTGTTCGGTAAATAGATTTATTTTTTAAATCTCTTACTTAT
* * * ** * *
19828767 TAAGTTTTGAAATATTATTAAATTAGTATTATTTTACTACGAATAAAATAG
130 TAA-TTTTTAAATATTAATAAATTAGTATTATTTTATTATAAAT-AACTTG
* * * * * * ** * *
19828818 TATGAATAGAACCAATTATTTGATGACAAAATAAAAGGTTATAACAATTTGAAGTAGATAATTAC
1 TATGAACA-AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * * * * *
19828883 TCAAACAGTCAAAACTATTTGAAATTGTTTGGTAAATAGATTTACTTTTTAAATCTCTTACTGAC
65 TCAAATAGTCATAACTATTTGAACTTGTTCGGTAAATAGATTTATTTTTTAAATCTCTTACTTAT
*
19828948 TAATTTTTTAAATATTAATAAATTAGTATTATTTTATT-TCAAATAAACTTA
130 TAA-TTTTTAAATATTAATAAATTAGTATTATTTTATTAT-AAAT-AACTTG
* * * *
19828999 CATTAACAAAAACAATTGTTTTATGACAAAACAAAAAGTAATAATGA-TT----T-G--AA--AT
1 TATGAAC-AAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * * * *
19829054 TGAAATAGT--T-A-TA-ATGAA-TTGGTTTGATAAATAGAATTATTTTCTAAATCTCTTA-TTA
65 TCAAATAGTCATAACTATTTGAACTT-GTTCGGTAAATAGATTTATTTTTTAAATCTCTTACTTA
** * * * * *
19829112 --AATTTTTGCCATAATAATAAATTAGTTTTATTCTATTCTGAATAAACTTG
129 TTAATTTTT-AAATATTAATAAATTAGTATTATTTTATTATAAAT-AACTTG
*** * * * * * ** * * *
19829162 TATGAGTTGAAATAATTATTTCATGACAAAATAAAAATGTCATAACAATTTAAAATA-AAAATTG
1 TATGA-ACAAAACAATTGTTTTATGACAAAA-CAAAAGGTCATAATGATTTGAAATAGATAATTA
* ** * * * * * * * *
19829226 TTCATATAGTTTTGATTGTATGAACTGGTTTGGCAAATA-ATTT-TTTTTTAAATCTCTTAGTTA
64 TTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAATAGATTTATTTTTTAAATCTCTTACTTA
* * * * *
19829289 TTAATTTTTAGAGTATTACTAAGTTAGTATTATTTTATTATGAATAAGCCTG
129 TTAATTTTTA-AATATTAATAAATTAGTATTATTTTATTATAAATAA-CTTG
* * * * * * ** *
19829341 TATGAATAGAAATAATTATTTTATGATAAAACAAAAGATTATAACAATTTGAAATAGATAATTGT
1 TATGAACA-AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * *
19829406 TCAAATAGTAATAACTATTTGAACTAGTTCGGTAAATATATTTACTTTTTAAATCTC-TA--T-T
65 TCAAATAGTCATAACTATTTGAACTTGTTCGGTAAATAGATTTATTTTTTAAATCTCTTACTTAT
*
19829467 TAATTCTTTAAATATTAATAAATTAGTATTATTTTATT-TCGAATAAACTTG
130 TAATT-TTTAAATATTAATAAATTAGTATTATTTTATTAT-AAAT-AACTTG
*** * * * * * * * *
19829518 TATGTTGAAAAGCAATTATTTTAAGACAATA-AAAA-GTAATAATGATTTAAAATAGGTAGTTGT
1 TATGAACAAAA-CAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * * * * *
19829581 TCAAATGGCCACAATTATTTGAAC-TGTTTCAGTAAATTGATTTATTTTTTTAAATCTCCTACTT
65 TCAAATAGTCATAACTATTTGAACTTG-TTCGGTAAATAGATTTA-TTTTTTAAATCTCTTACTT
* * * * * *
19829645 GTTAACCTTTGAAATATTAATAAAGTAGT-TT-TTTT-TT-TAGATAAACTTA
128 ATTAA-TTTTTAAATATTAATAAATTAGTATTATTTTATTATAAAT-AACTTG
* * * * * *
19829694 TAT-AAGCTGAAATAATTGTTTTATGATAGAACAAAAGGTCATAATAATTTGAAATAAAT-ATTA
1 TATGAA-C-AAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTA
* * * * * * * * * * * * *
19829757 TTTATATATTCTTAATTGTTTGAA-TTGGTTTGGCAAACATATTTAATTTTTAAATTTCTTAGTT
64 TTCAAATAGTCATAACTATTTGAACTT-GTTCGGTAAATAGATTTATTTTTTAAATCTCTTACTT
* * * * *
19829821 ATTAATTTTTAGAGTATTACTAAATTAGTATTATTTTATTTTGAATGAGCTTG
128 ATTAATTTTTA-AATATTAATAAATTAGTATTATTTTATTATAAAT-AACTTG
* * * * * ** *
19829874 TATGAATAGAAACAATTGTTTTATTATAAAACAACAGGTTATAACAATTTGAAATAGATAATTGT
1 TATGAACA-AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * * * *
19829939 TCAAATAGCCATAACTATTTGATCTTATTCAGTAAAAAGATTTATTTTTTAAATCTAC-TACCTA
65 TCAAATAGTCATAACTATTTGAACTTGTTCGGTAAATAGATTTATTTTTTAAATCT-CTTACTTA
* * * *
19830003 TTAATTTTCAGAATATAAATAAATTAGCATTATTTTACTT-CAAATAAACTTG
129 TTAATTTTTA-AATATTAATAAATTAGTATTATTTTA-TTATAAAT-AACTTG
* * * * *
19830055 TATGAATAGAAACAATTGTTTTATGACAAAACAAAAGATCATAACT-ATTTTAAATAAATAATTG
1 TATGAACA-AAACAATTGTTTTATGACAAAACAAAAGGTCATAA-TGATTTGAAATAGATAATTA
* * * * * * * *
19830119 TTCAAACAATCATAACTTTTTGAACTTGTTCGATAAACAAATTTAATTTTTAAATCTTTTACTTA
64 TTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAATAGATTTATTTTTTAAATCTCTTACTTA
* * * * * *
19830184 TCAATTTTTGAAATATTAGTAAACTAGCATTATTTTATTTTAAATATGCTTG
129 TTAATTTTT-AAATATTAATAAATTAGTATTATTTTATTATAAATA-ACTTG
* *
19830236 CATGAACAAAAACAATTAG-TTTATGACAAAACAAAAGGTCATAATTATTTGAAATAGATAATTA
1 TATGAAC-AAAACAATT-GTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTA
* * * * * * * * *
19830300 TTCAAATAGCCATAATTATTAGAA-TAAGTTC--AAAAGACTTATTTATTTTTAAAAT-TTTTAC
64 TTCAAATAGTCATAACTATTTGAACT-TGTTCGGTAAATA--GATTTATTTTTTAAATCTCTTAC
* *
19830361 TTATAAATTTTTGAAATATTAATCAATTTA-TATTATTTTATTCA-AAATAAGCTTG
126 TTATTAATTTTT-AAATATTAAT-AAATTAGTATTATTTTATT-ATAAATAA-CTTG
* *
19830416 TATGAACAGAAACAATTGTTTTATAACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTAT
1 TATGAACA-AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * ** * *
19830481 TCAAATAATCATAACTATTTAAACTTGTTTAGTAAATA-ATTTTATTTTTTAAAACTCTTACTCA
65 TCAAATAGTCATAACTATTTGAACTTGTTCGGTAAATAGA-TTTATTTTTTAAATCTCTTACTTA
* * * *
19830545 TTAATTTTTGAAATATTAATAAATTAATATTATTTTATT-TCGAATAAGCCTA
129 TTAATTTTT-AAATATTAATAAATTAGTATTATTTTATTAT-AAATAA-CTTG
** * * ** * * * *
19830597 TATGAATTGAGACAATTGTTTTATAATGAAACAAAAGGTCATAACGATTTTAAATATATAATTAC
1 TATGAA-CAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * * * * * *
19830662 TCAAATAGTTATGACTATTTGAACTTGTACAGTAAACATATTTATTTTTAAAATCTTTTACTTAT
65 TCAAATAGTCATAACTATTTGAACTTGTTCGGTAAATAGATTTATTTTTTAAATCTCTTACTTAT
* * * * * *
19830727 TAATTATCAAA-ATTTAATAAATTACTATTATTTTAATCTGAATAAGCTTG
130 TAATTTTTAAATA-TTAATAAATTAGTATTATTTTATTATAAATAA-CTTG
* * * * * * * *
19830777 TAAGGAGA-AAAACAATTATTTTATGACAAAACAAAAAGCCATAATCATTTGAAATAAAAAATTG
1 T-ATGA-ACAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTA
* * * * ** * * *
19830841 TTCAAATAATCAAAATTATTTGAACTTATTTAGTAAACAGATTTATATTTTT-GATCTTTTACTT
64 TTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAATAGATTTAT-TTTTTAAATCTCTTACTT
* ** *
19830905 ATTAATTATCTAAATATTAATAAATTTCTA-TAGTTTTATT-T-TAT-A--TG
128 ATTAATT-TTTAAATATTAATAAATTAGTATTA-TTTTATTATAAATAACTTG
* * * * * ** * *
19830952 AAT--AGAAAA-AATTATTTTATGAAAAAACAAACA-GTTATAGCG-TTTGAAATTGATAATTGT
1 TATGAACAAAACAATTGTTTTATGACAAAACAAA-AGGTCATAATGATTTGAAATAGATAATTAT
* * ** * *
19831012 TTAAATAGTCATAACTATTTAAACTTGTTTAGTAAACAGATTTA-TTTTTAAATCCCTTA-TTCA
65 TCAAATAGTCATAACTATTTGAACTTGTTCGGTAAATAGATTTATTTTTTAAATCTCTTACTT-A
* * ** * *
19831075 TTAATTTTTGAAAGATTAATAAGTTAAAATTATGTTATT-TCAGATAAGCTTG
129 TTAATTTTT-AAATATTAATAAATTAGTATTATTTTATTAT-AAATAA-CTTG
* * * * * * * *
19831127 TATGAATAGAAACAATTGTTCTGTGATAAAATATAAGGTCATAATGATTTGAAATAGACAATTGT
1 TATGAACA-AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* ** * * * * * **
19831192 TCAAACAGTCATAACTATTTCCA-TTGGTTAGGTTAACAAATTCATTTTTTAAATCTGATACTTA
65 TCAAATAGTCATAACTATTTGAACTT-GTTCGGTAAATAGATTTATTTTTTAAATCTCTTACTTA
** * * * **
19831256 TTAATTTCAAAATATTAATATATTAGCATTACTTTATT-CCAATAAGAC-TG
129 TTAATTTTTAAATATTAATAAATTAGTATTATTTTATTATAAAT-A-ACTTG
* * * * * * *
19831306 TATGAACAGAAACAATTCTTTTATGATAAAATAAATGGTCATCATGATTTGAAAAAAATAATTAT
1 TATGAACA-AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * * **
19831371 TCAAATAGTTATAACTAATTAAACTGGTTTAGTAAATAGATTTATTTTTTAAATCTC-T--TT-T
65 TCAAATAGTCATAACTATTTGAACTTGTTCGGTAAATAGATTTATTTTTTAAATCTCTTACTTAT
* ** * * ** *
19831432 TAATTTTTAAAATATTAAAAAATTAACATTACTTTGTTCCAAATAAACTTA
130 TAATTTTT-AAATATTAATAAATTAGTATTATTTTATTATAAAT-AACTTG
* * * *
19831483 TATGAACAAAAGCATTTGTTTTATGACAAAACAAAAGGTAATAACGATTTGAAATAGATAATTGT
1 TATGAACAAAA-CAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * * *
19831548 TCAAATAGTCATAATTATTTGAACTGGTTCGGCAAACT-GAGTTATTTTTTAAATTTCTTACTTA
65 TCAAATAGTCATAACTATTTGAACTTGTTCGGTAAA-TAGATTTATTTTTTAAATCTCTTACTTA
* * * * * *
19831612 TTAATTTTTTAAATATTAATAAATT--TATTTTTTTTATTCTGAGTAAGTTAC
129 TTAA-TTTTTAAATATTAATAAATTAGTA-TTATTTTATTATAAATAACTT-G
* * * ** * * *
19831663 TAAGAACTGAAAAAAATTATTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAAAGAATTG
1 TATGAAC--AAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTA
* * * *** * * * *
19831728 TTCATATAG-CGTTAACTATTTGAACTAGTTCAACAAATAAATTTATTTTTCATATCTCTTAGTT
64 TTCAAATAGTC-ATAACTATTTGAACTTGTTCGGTAAATAGATTTATTTTTTAAATCTCTTACTT
* * * * * *
19831792 ATTAATTTTCAGAATATTATTACATTAGTATTATTTTATTCTGAATAAATTTG
128 ATTAATTTTTA-AATATTAATAAATTAGTATTATTTTATTATAAAT-AACTTG
* * * * * * **
19831845 TATGAATAGAAATAATTGTTTTAAGCCATAACAAAAGGTTATAACAATTTGAAATATG-TAATTA
1 TATGAACA-AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATA-GATAATTA
* * * * * *
19831909 TTTAAATAGTCATAACTATTTGAA-TTGGTTTGATAAACA-AGTTTATTTTTTATATCTCCTACT
64 TTCAAATAGTCATAACTATTTGAACTT-GTTCGGTAAATAGA-TTTATTTTTTAAATCTCTTACT
* * * *
19831972 TATTAATTTTTGAAATATTAGTAAATTACTATTATTTTA-TATTGAATAGGCTTG
127 TATTAATTTTT-AAATATTAATAAATTAGTATTATTTTATTA-TAAATA-ACTTG
** * * * * * * *
19832026 TATGATGAAAAGTAATTATTTTATGACAAAACAAAAGTTCATAATGATATGACATAAATAATTCT
1 TATGAACAAAA-CAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * ** * *
19832091 TCAAATTGCCATAATTATTTGAACTAATTCGATAAACTA-ATTTATTTTTTAAATCTCTAACTTA
65 TCAAATAGTCATAACTATTTGAACTTGTTCGGTAAA-TAGATTTATTTTTTAAATCTCTTACTTA
* * * * * *
19832155 TGAATTTTTGAAATATTAAT-AAGTAATATTATTTTATTTTGAATAAGCTTT
129 TTAATTTTT-AAATATTAATAAATTAGTATTATTTTATTATAAATAA-CTTG
*** ** * * *
19832206 TATGGATTGAAA-AATTGTTTTACAATAAAA-ATAGAAGGTCATAATAATTTTAAATAGATAATT
1 TAT-GAACAAAACAATTGTTTTATGACAAAACA-A-AAGGTCATAATGATTTGAAATAGATAATT
* * * * * * ** * * *
19832269 GTTCAAATAATCATAACTATTTGAACTTGTTCAGTAGACAAATTTATTTTTTTTATTTTTTTCTT
63 ATTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAATAGATTTATTTTTTAAATCTCTTACTT
* * * *
19832334 ATTAATTTTTTGAATGTTAATAAATTAGTATTATTTTATT-TCGAATAAACATG
128 ATTAA-TTTTTAAATATTAATAAATTAGTATTATTTTATTAT-AAAT-AACTTG
** * ** * * *
19832387 TATGAATTGAAACAATTATTTTATGATTAAATAAAAGGTCAGAATAATTTGAAATAGATAAGTGT
1 TATGAA-CAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAA-T-T
* * * * * ** * *
19832452 -TGTCATAGGCTTGTTCGACAAACACATTT--A-TT-TT--TTAAATCCTTATTGATTTTTGAAA
63 AT-TCA-A--ATAG-TC-A-TAAC-TATTTGAACTTGTTCGGTAAAT--AGATTTATTTTTTAAA
** * * * * * *
19832510 --TAGTAATAAATTGATATTATTT---TATT-CTAAA-TA--ATT-TTGTATGAATACCAATTA-
118 TCTCTTACT-TATT-A-ATT-TTTAAATATTAATAAATTAGTATTATTTTAT-TATA--AATAAC
19832564 -T-
176 TTG
* **** * * ** * *
19832565 TATGAATAATTGGTATTATTTTATGATAAAACAAAATATCATAACGATTTGAAATAGATGA-TAG
1 TATGAACAA-AACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTA-
* * * * * *
19832629 TTCAAATGGACATGACTATTTGAACTTATTCGGTAAACAGATTTAATTTTTAAATCT-TTAACTT
64 TTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAATAGATTTATTTTTTAAATCTCTT-ACTT
* ** *
19832693 ATTAATTTTTAGAATATTAATAAATTAGTATAATTTTATTCCAAATAAACTTT
128 ATTAATTTTTA-AATATTAATAAATTAGTATTATTTTATTATAAAT-AACTTG
* * * ** * * * * *
19832746 TATGAATAGAAACAAATGCTTTATGACAAAACAAAAAATCAAAACGATTTAAAATAAATCATTAT
1 TATGAACA-AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * *
19832811 TTAAATAGTTATAACTATTTGAACTCGCTT-GGTAAGATA-ATTTATTTTTTAAATCTTTTACTT
65 TCAAATAGTCATAACTATTTGAACTTG-TTCGGTAA-ATAGATTTATTTTTTAAATCTCTTACTT
* * * * *
19832874 ATCAATTTTTGGAATTTTAATAAATTAGTATTATTTCATT-TCCAATAAGCTTG
128 ATTAATTTTT-AAATATTAATAAATTAGTATTATTTTATTAT-AAATAA-CTTG
* * * * * ** ** *
19832927 TATAGAGA-GAAATAATTGGTTTATAATAAAACAATTGGTCATACCGATTTGAAATATATAATTA
1 TAT-GA-ACAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTA
* ** * * * * * *
19832991 TTCAAATAGTCATAAATATTTGAA-TGTGTTTAGAAAACAAATTTATTTTTCAAAT-TTTTGCTT
64 TTCAAATAGTCATAACTATTTGAACT-TGTTCGGTAAATAGATTTATTTTTTAAATCTCTTACTT
* *
19833054 ATTAATTTTTGGAATATTAATAAATGTA-TATTATTTTATT-TGAAATAAGGTTG
128 ATTAATTTTT-AAATATTAATAAAT-TAGTATTATTTTATTAT-AAATAA-CTTG
* * * * *
19833107 GATGAACAGAACCAATTATTTT-TGACAAAATAAAAGGTCATAAT-ATTTTGAAATAGATAATTG
1 TATGAACA-AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGA-TTTGAAATAGATAATTA
*** * * ** * * ** *
19833170 TTTGGATAGTAATAACTATTTTGAACTTATTTAGTAAACAGATTCATTGTTTTAGTTCTTTTACT
64 TTCAAATAGTCATAACTA-TTTGAACTTGTTCGGTAAATAGATTTATT-TTTTAAATCTCTTACT
* * * * *
19833235 CACTAATTTTTGAAATATTAATAAATTAGTTTTATTTTATT-TCATATAAGCTTA
127 TATTAATTTTT-AAATATTAATAAATTAGTATTATTTTATTAT-AAATAA-CTTG
* * * * * * *
19833289 TGTTAACTAAAACAATTGTTTTATTACGAAACAAAAGGTCACAATAATTTGAAATGGATAATTAT
1 TATGAAC-AAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* * * * * *
19833354 TCAAATAGTCATGACTATTTGAAATTGTTTGGTATACAGA--TATATTTTAAATCGT-TTACTTA
65 TCAAATAGTCATAACTATTTGAACTTGTTCGGTAAATAGATTTATTTTTTAAATC-TCTTACTTA
* * * **
19833416 TTAATTATTGAAATATTAATAAATTAATATTATTTTAATT-TGAATGAGTTTG
129 TTAATT-TTTAAATATTAATAAATTAGTATTATTTT-ATTATAAAT-AACTTG
* * * * *
19833468 TATGAGCAGAAACAATTGTTTTATGACAAAACAAAAAGTCATAA-CAATT----T-G----TTGT
1 TATGAACA-AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* *
19833523 TCAAATAGTCATAA-TAATTTGAACTTGTTTGGTAAATAGATTTATTTTTTAAAATCTTTTACTT
65 TCAAATAGTCATAACT-ATTTGAACTTGTTCGGTAAATAGATTTATTTTTT-AAATCTCTTACTT
* * * * *
19833587 ATTAGTTGCTT-CATACTAATAAATTTA-TATTATTTTATT-TGAAATGAGCTTG
128 ATTAATT-TTTAAATATTAATAAA-TTAGTATTATTTTATTAT-AAAT-AACTTG
19833639 TATGAAC
1 TATGAAC
19833646 GGATGAAATC
Statistics
Matches: 5993, Mismatches: 1341, Indels: 732
0.74 0.17 0.09
Matches are distributed among these distances:
162 5 0.00
163 57 0.01
164 12 0.00
165 6 0.00
166 34 0.01
167 2 0.00
168 11 0.00
169 76 0.01
170 61 0.01
171 85 0.01
172 35 0.01
173 56 0.01
174 84 0.01
175 124 0.02
176 351 0.06
177 475 0.08
178 244 0.04
179 451 0.08
180 1453 0.24
181 1857 0.31
182 397 0.07
183 70 0.01
184 11 0.00
185 3 0.00
186 16 0.00
187 8 0.00
188 2 0.00
189 3 0.00
190 4 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (178 bp):
TATGAACAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATT
CAAATAGTCATAACTATTTGAACTTGTTCGGTAAATAGATTTATTTTTTAAATCTCTTACTTATT
AATTTTTAAATATTAATAAATTAGTATTATTTTATTATAAATAACTTG
Found at i:19827102 original size:18 final size:18
Alignment explanation
Indices: 19827057--19827102 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
19827047 AAACAAAGAT
19827057 CATAACAATTTAAGATAG
1 CATAACAATTTAAGATAG
**
19827075 -ATAATTATTTAA-ATAG
1 CATAACAATTTAAGATAG
19827091 CCATAACAATTT
1 -CATAACAATTT
19827103 GAACTAGTCT
Statistics
Matches: 22, Mismatches: 4, Indels: 4
0.73 0.13 0.13
Matches are distributed among these distances:
16 4 0.18
17 10 0.45
18 8 0.36
ACGTcount: A:0.48, C:0.11, G:0.07, T:0.35
Consensus pattern (18 bp):
CATAACAATTTAAGATAG
Done.