Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 133 of 190
Found at i:21381066 original size:21 final size:21
Alignment explanation
Indices: 21381037--21381079 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
21381027 TCGTCTTGAG
21381037 AGCTCTGTAGTGAGATTGGGT
1 AGCTCTGTAGTGAGATTGGGT
*
21381058 AGCTTTGTAGTGAGATTGGGT
1 AGCTCTGTAGTGAGATTGGGT
21381079 A
1 A
21381080 AAATACTACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.21, C:0.07, G:0.37, T:0.35
Consensus pattern (21 bp):
AGCTCTGTAGTGAGATTGGGT
Found at i:21386958 original size:35 final size:34
Alignment explanation
Indices: 21386913--21387008 Score: 104
Period size: 35 Copynumber: 2.8 Consensus size: 34
21386903 TTTTTTCGAT
* *
21386913 TATTCATTATTTTTGACTTGTAGTGTTGTCCTGG
1 TATTCTTTATTTTTGACTTGTGGTGTTGTCCTGG
* ** *
21386947 T-TGTCTTTTATTTCTGACTTACGGTATTGTCCTGG
1 TAT-TC-TTTATTTTTGACTTGTGGTGTTGTCCTGG
21386982 TCATTCTTTATTTTTGACTTGTGGTGT
1 T-ATTCTTTATTTTTGACTTGTGGTGT
21387009 CCTTTATTTA
Statistics
Matches: 48, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
33 1 0.02
34 3 0.06
35 41 0.85
36 2 0.04
37 1 0.02
ACGTcount: A:0.12, C:0.14, G:0.20, T:0.54
Consensus pattern (34 bp):
TATTCTTTATTTTTGACTTGTGGTGTTGTCCTGG
Found at i:21387030 original size:23 final size:23
Alignment explanation
Indices: 21386987--21387031 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
21386977 CCTGGTCATT
* **
21386987 CTTTATTTTTGACTTGTGGTGTC
1 CTTTATTTATGACTTACGGTGTC
21387010 CTTTATTTATGACTTACGGTGT
1 CTTTATTTATGACTTACGGTGT
21387032 TATCCTGATC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.13, C:0.13, G:0.20, T:0.53
Consensus pattern (23 bp):
CTTTATTTATGACTTACGGTGTC
Found at i:21387052 original size:58 final size:58
Alignment explanation
Indices: 21386948--21387061 Score: 140
Period size: 58 Copynumber: 2.0 Consensus size: 58
21386938 TTGTCCTGGT
* * * * *
21386948 TGTCTTTTATTTCTGACTTACGGTATTGTCCTGGTCATTCTTTATTTTTGACTTGTGG
1 TGTCCTTTATTTATGACTTACGGTATTATCCTGATCATTCTCTATTTTTGACTTGTGG
* * *
21387006 TGTCCTTTATTTATGACTTACGGTGTTATCCTGATCGTT-TGCTATTTTTGGCTTGT
1 TGTCCTTTATTTATGACTTACGGTATTATCCTGATCATTCT-CTATTTTTGACTTGT
21387062 AGTATTGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
57 1 0.02
58 46 0.98
ACGTcount: A:0.12, C:0.16, G:0.19, T:0.53
Consensus pattern (58 bp):
TGTCCTTTATTTATGACTTACGGTATTATCCTGATCATTCTCTATTTTTGACTTGTGG
Found at i:21387402 original size:12 final size:13
Alignment explanation
Indices: 21387385--21387413 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
21387375 TATTTTTGAC
21387385 AAAAATAAA-AAA
1 AAAAATAAACAAA
21387397 AAAAATAAACAAA
1 AAAAATAAACAAA
21387410 AAAA
1 AAAA
21387414 GTAAGGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.90, C:0.03, G:0.00, T:0.07
Consensus pattern (13 bp):
AAAAATAAACAAA
Found at i:21389469 original size:12 final size:12
Alignment explanation
Indices: 21389452--21389483 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
21389442 GCATAGAAAA
21389452 TAATAATAATAG
1 TAATAATAATAG
*
21389464 TAATAATTATAG
1 TAATAATAATAG
21389476 TAATAATA
1 TAATAATA
21389484 CGTTTTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (12 bp):
TAATAATAATAG
Found at i:21389548 original size:3 final size:3
Alignment explanation
Indices: 21389540--21389580 Score: 55
Period size: 3 Copynumber: 13.3 Consensus size: 3
21389530 ATCAAAGTTC
* *
21389540 AAT AAT AAT AAT AGT AAT AAT AAT AAA AAGT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT A
21389581 GTTCAACCTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
3 31 0.94
4 2 0.06
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:21389634 original size:23 final size:23
Alignment explanation
Indices: 21389608--21389657 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
21389598 GGAAATTATT
**
21389608 AAATAATAAAGTTTAAAAAATAA
1 AAATAATAAAGAATAAAAAATAA
** *
21389631 AAATTTTAAAGAATAAAGAATAA
1 AAATAATAAAGAATAAAAAATAA
21389654 AAAT
1 AAAT
21389658 TGGAGAGTCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (23 bp):
AAATAATAAAGAATAAAAAATAA
Found at i:21389640 original size:16 final size:16
Alignment explanation
Indices: 21389608--21389647 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
21389598 GGAAATTATT
21389608 AAATAATAAAGTTTAAA
1 AAATAA-AAAGTTTAAA
*
21389625 AAATAAAAATTTTAAA
1 AAATAAAAAGTTTAAA
*
21389641 GAATAAA
1 AAATAAA
21389648 GAATAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.28
Consensus pattern (16 bp):
AAATAAAAAGTTTAAA
Found at i:21389864 original size:3 final size:3
Alignment explanation
Indices: 21389846--21389996 Score: 105
Period size: 3 Copynumber: 48.3 Consensus size: 3
21389836 ATTTTTAATT
* * *
21389846 TTA TTA TTT TTCA TTA TTA TTA TGA TTA TTA TGA TTA TTA TTA TT-
1 TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
21389891 TTA TTTA TTTA TCTA TTA TTA TTA TT- TTA TTTA TTTA TCTA TTA TTA
1 TTA -TTA -TTA T-TA TTA TTA TTA TTA TTA -TTA -TTA T-TA TTA TTA
* *
21389938 TTA TT- TTT TTA GTTA TCTA TTA ATA -TA TT- TTA TTA TTTA TCTA TTA
1 TTA TTA TTA TTA -TTA T-TA TTA TTA TTA TTA TTA TTA -TTA T-TA TTA
* *
21389984 TTT TTA TTT TTA T
1 TTA TTA TTA TTA T
21389997 CTTTTTTCTT
Statistics
Matches: 122, Mismatches: 12, Indels: 28
0.75 0.07 0.17
Matches are distributed among these distances:
2 10 0.08
3 78 0.64
4 34 0.28
ACGTcount: A:0.27, C:0.03, G:0.02, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:21389908 original size:26 final size:26
Alignment explanation
Indices: 21389879--21389993 Score: 182
Period size: 26 Copynumber: 4.5 Consensus size: 26
21389869 GATTATTATG
21389879 ATTATTATTATTTTATTTATTTATCT
1 ATTATTATTATTTTATTTATTTATCT
21389905 ATTATTATTATTTTATTTATTTATCT
1 ATTATTATTATTTTATTTATTTATCT
*
21389931 ATTATTATTATTTT-TTTAGTTATCT
1 ATTATTATTATTTTATTTATTTATCT
*
21389956 ATTAATA-TATTTTA-TTATTTATCT
1 ATTATTATTATTTTATTTATTTATCT
*
21389980 ATTATTTTTATTTT
1 ATTATTATTATTTT
21389994 TATCTTTTTT
Statistics
Matches: 82, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
24 20 0.24
25 22 0.27
26 40 0.49
ACGTcount: A:0.27, C:0.03, G:0.01, T:0.69
Consensus pattern (26 bp):
ATTATTATTATTTTATTTATTTATCT
Found at i:21389974 original size:49 final size:51
Alignment explanation
Indices: 21389879--21389994 Score: 182
Period size: 49 Copynumber: 2.3 Consensus size: 51
21389869 GATTATTATG
* *
21389879 ATTATTATTATTTTATTTATTTATCTATTATTATTATTTTATTTATTTATCT
1 ATTATTATTATTTT-TTTAGTTATCTATTAATATTATTTTATTTATTTATCT
21389931 ATTATTATTATTTTTTTAGTTATCTATTAATA-TATTTTA-TTATTTATCT
1 ATTATTATTATTTTTTTAGTTATCTATTAATATTATTTTATTTATTTATCT
*
21389980 ATTATTTTTATTTTT
1 ATTATTATTATTTTT
21389995 ATCTTTTTTC
Statistics
Matches: 61, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
49 24 0.39
50 7 0.11
51 16 0.26
52 14 0.23
ACGTcount: A:0.27, C:0.03, G:0.01, T:0.69
Consensus pattern (51 bp):
ATTATTATTATTTTTTTAGTTATCTATTAATATTATTTTATTTATTTATCT
Found at i:21390820 original size:3 final size:3
Alignment explanation
Indices: 21390814--21390839 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
21390804 ATTTTTTTTC
21390814 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
21390840 TATTGATTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:21391189 original size:65 final size:65
Alignment explanation
Indices: 21391105--21391232 Score: 175
Period size: 65 Copynumber: 2.0 Consensus size: 65
21391095 TAAATGGTTT
* * *
21391105 AAAAAAATAGTTTTAGGAAAAAGTTAAAAGTATCAATTTTTCTCAAAATTAAAATTTCAAAATTA
1 AAAAAAATAGTTTTAGGAAAAAGTTAAAAGTACCAATTTTCCTCAAAATAAAAATTTCAAAATTA
* * * ** *
21391170 AAAAAAATATTTTTGGGAAAAAGTTGAAAGTACCAATTTTCCTTGAAATAAAAATTTCTAAAT
1 AAAAAAATAGTTTTAGGAAAAAGTTAAAAGTACCAATTTTCCTCAAAATAAAAATTTCAAAAT
21391233 GTTTTAAAGA
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
65 54 1.00
ACGTcount: A:0.50, C:0.07, G:0.09, T:0.34
Consensus pattern (65 bp):
AAAAAAATAGTTTTAGGAAAAAGTTAAAAGTACCAATTTTCCTCAAAATAAAAATTTCAAAATTA
Found at i:21401627 original size:14 final size:16
Alignment explanation
Indices: 21401610--21401642 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
21401600 AAAAAAAAAG
21401610 AAAAAAAG-GAA-GAA
1 AAAAAAAGAGAATGAA
21401624 AAAAAAAGAGAATGAA
1 AAAAAAAGAGAATGAA
21401640 AAA
1 AAA
21401643 GGAAAACTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 3 0.18
16 6 0.35
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (16 bp):
AAAAAAAGAGAATGAA
Found at i:21401641 original size:26 final size:23
Alignment explanation
Indices: 21401598--21401646 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 23
21401588 TACTATGCTT
21401598 GAAAAAAAAAAGAAAAAAAGGAA
1 GAAAAAAAAAAGAAAAAAAGGAA
21401621 GAAAAAAAAAGAGAATGAAAAAGGAA
1 GAAAAAAAAA-AGAA--AAAAAGGAA
21401647 AACTCAAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 10 0.43
24 4 0.17
26 9 0.39
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (23 bp):
GAAAAAAAAAAGAAAAAAAGGAA
Found at i:21402794 original size:86 final size:85
Alignment explanation
Indices: 21402671--21403012 Score: 440
Period size: 86 Copynumber: 4.0 Consensus size: 85
21402661 AAGTTCTATT
* *
21402671 GCCTCTGTTTAGAGAAGCTTTATTTATTTTAAAAGTCGTTGAGCCTCTGTTTAGAGGAGCTGTGT
1 GCCTTTGTTTAGAGAAGCTTTATTTATTTTAAAAGTCGTTGAGCCTCTGTTTAAAGGAGCTGTGT
*
21402736 TTATTTTTTCAAAGTTGTTGA
66 TTA-TTTTTCAAAGTCGTTGA
*
21402757 GCCTTTGTTTAGAGAAGCTTTATTTATTTTAAAAGTCGTTGAGCCTCTGTTTAGAGGAGCTGTGT
1 GCCTTTGTTTAGAGAAGCTTTATTTATTTTAAAAGTCGTTGAGCCTCTGTTTAAAGGAGCTGTGT
*
21402822 TTATTTTTTCAAAGTTGTTGA
66 TTA-TTTTTCAAAGTCGTTGA
* **
21402843 GCCTTTGTTTAGAGGAGCTTTATTTATTTTAAAAGTCGTTGAGCCTCTGTTTAAAGGAGC--AAT
1 GCCTTTGTTTAGAGAAGCTTTATTTATTTTAAAAGTCGTTGAGCCTCTGTTTAAAGGAGCTGTGT
* * *
21402906 TTACTTTCCAAAGGTCGTTCA
66 TTATTTTTCAAA-GTCGTTGA
* * * * * * *
21402927 GCCTTTATTTAGAGGAGC--AATTTACTTTCCAAAAATCTTTGAGCCTCTGTTTAAAGGAGCTTT
1 GCCTTTGTTTAGAGAAGCTTTATTTA-TTT-TAAAAGTCGTTGAGCCTCTGTTTAAAGGAGCTGT
21402990 GTTTATTTTTCAAAAGTCGTTGA
64 GTTTATTTTTC-AAAGTCGTTGA
21403013 ACCTCTACTT
Statistics
Matches: 231, Mismatches: 19, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
82 5 0.02
83 10 0.04
84 55 0.24
86 158 0.68
87 3 0.01
ACGTcount: A:0.24, C:0.13, G:0.20, T:0.42
Consensus pattern (85 bp):
GCCTTTGTTTAGAGAAGCTTTATTTATTTTAAAAGTCGTTGAGCCTCTGTTTAAAGGAGCTGTGT
TTATTTTTCAAAGTCGTTGA
Found at i:21403034 original size:44 final size:43
Alignment explanation
Indices: 21402671--21403033 Score: 366
Period size: 42 Copynumber: 8.5 Consensus size: 43
21402661 AAGTTCTATT
*
21402671 GCCTCTGTTTAGAGAAGCTTTATTTATTTT-AAAAGTCGTTGA
1 GCCTCTGTTTAGAGGAGCTTTATTTATTTTCAAAAGTCGTTGA
* * *
21402713 GCCTCTGTTTAGAGGAGCTGTGTTTATTTTTTC-AAAGTTGTTGA
1 GCCTCTGTTTAGAGGAGCTTTATTTA--TTTTCAAAAGTCGTTGA
* *
21402757 GCCTTTGTTTAGAGAAGCTTTATTTATTTT-AAAAGTCGTTGA
1 GCCTCTGTTTAGAGGAGCTTTATTTATTTTCAAAAGTCGTTGA
* * *
21402799 GCCTCTGTTTAGAGGAGCTGTGTTTATTTTTTC-AAAGTTGTTGA
1 GCCTCTGTTTAGAGGAGCTTTATTTA--TTTTCAAAAGTCGTTGA
*
21402843 GCCTTTGTTTAGAGGAGCTTTATTTATTTT-AAAAGTCGTTGA
1 GCCTCTGTTTAGAGGAGCTTTATTTATTTTCAAAAGTCGTTGA
* * * * *
21402885 GCCTCTGTTTAAAGGAGC--AATTTACTTTCCAAAGGTCGTTCA
1 GCCTCTGTTTAGAGGAGCTTTATTTA-TTTTCAAAAGTCGTTGA
* * * * * *
21402927 GCCTTTATTTAGAGGAGC--AATTTACTTTCCAAAAATCTTTGA
1 GCCTCTGTTTAGAGGAGCTTTATTTA-TTTTCAAAAGTCGTTGA
* *
21402969 GCCTCTGTTTAAAGGAGCTTTGTTTATTTTTCAAAAGTCGTTGA
1 GCCTCTGTTTAGAGGAGCTTTATTTA-TTTTCAAAAGTCGTTGA
* **
21403013 ACCTCTACTTAGAGGAGCTTT
1 GCCTCTGTTTAGAGGAGCTTT
21403034 GATCAAAATT
Statistics
Matches: 265, Mismatches: 44, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
40 5 0.02
41 3 0.01
42 149 0.56
44 108 0.41
ACGTcount: A:0.24, C:0.14, G:0.20, T:0.42
Consensus pattern (43 bp):
GCCTCTGTTTAGAGGAGCTTTATTTATTTTCAAAAGTCGTTGA
Found at i:21403066 original size:13 final size:12
Alignment explanation
Indices: 21403046--21403078 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
21403036 TCAAAATTTT
21403046 AACCAAAAAAAC
1 AACCAAAAAAAC
21403058 AACCAAAAAAA-
1 AACCAAAAAAAC
21403069 AA-CAAAAAAA
1 AACCAAAAAAA
21403079 AGTAAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 8 0.38
11 2 0.10
12 11 0.52
ACGTcount: A:0.82, C:0.18, G:0.00, T:0.00
Consensus pattern (12 bp):
AACCAAAAAAAC
Found at i:21403259 original size:5 final size:5
Alignment explanation
Indices: 21403249--21403282 Score: 50
Period size: 5 Copynumber: 6.4 Consensus size: 5
21403239 TTTTTAAAAT
21403249 TTTAA TTTAA TTTAA TTTAA TTTTTAA TTTAA TT
1 TTTAA TTTAA TTTAA TTTAA --TTTAA TTTAA TT
21403283 ATTTTTCATT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
5 22 0.81
7 5 0.19
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (5 bp):
TTTAA
Found at i:21403298 original size:3 final size:3
Alignment explanation
Indices: 21403280--21403351 Score: 58
Period size: 3 Copynumber: 23.0 Consensus size: 3
21403270 TTTTAATTTA
* * *
21403280 ATT ATT TTT CATT ATT ATT ATT ATT ATT ATT TTT AGTT ATCT ATT AAT
1 ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT A-TT AT-T ATT ATT
21403328 A-T ATT -TT ATT ATTT ATCT ATT ATT
1 ATT ATT ATT ATT A-TT AT-T ATT ATT
21403352 TTAATTTTAT
Statistics
Matches: 57, Mismatches: 5, Indels: 14
0.75 0.07 0.18
Matches are distributed among these distances:
2 4 0.07
3 39 0.68
4 14 0.25
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:21403339 original size:20 final size:18
Alignment explanation
Indices: 21403294--21403340 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 18
21403284 TTTTTCATTA
*
21403294 TTATTATTATTATTATTT
1 TTATTATTATTAATATTT
21403312 TTAGTTATCTATTAATATATT
1 TTA-TTAT-TATTAATAT-TT
21403333 TTATTATT
1 TTATTATT
21403341 TATCTATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 3 0.12
19 5 0.20
20 12 0.48
21 5 0.20
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (18 bp):
TTATTATTATTAATATTT
Found at i:21404215 original size:3 final size:3
Alignment explanation
Indices: 21404209--21404258 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
21404199 GGTTTTTTTC
21404209 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
21404257 TT
1 TT
21404259 TATTGATTAG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:21404608 original size:65 final size:59
Alignment explanation
Indices: 21404478--21404685 Score: 204
Period size: 65 Copynumber: 3.4 Consensus size: 59
21404468 TTTTTAAGAG
* * *
21404478 AAAGTTGAAAGTATCAA-TTTCCTTGAAAAATAAAAGGT-TTAAAAAAAATAGTTTTAGGGA
1 AAAGTTGAAAGTATCAATTTTCC-TCAAAAATAAAA-TTATTAAAAAAAACA-TTTTAGGGA
* *
21404538 AAAGTTGAAAGTATCAATTTTCCTCAAAATTAAAATTTCAAAATTAAAAAAAACATTTTTGGGGA
1 AAAGTTGAAAGTATCAATTTTCCTCAAAAATAAAA-TT----ATTAAAAAAAACA-TTTTAGGGA
* * * * * * * *
21404603 AAAGTTGGAAGTACCAGTTTTCCTTAAAAATAAAATTATCAAGAAAAGCATTTTAAGGA
1 AAAGTTGAAAGTATCAATTTTCCTCAAAAATAAAATTATTAAAAAAAACATTTTAGGGA
21404662 AAAGTTGAAAGTATCAATTTTCCT
1 AAAGTTGAAAGTATCAATTTTCCT
21404686 TGAAATAAAA
Statistics
Matches: 122, Mismatches: 20, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
59 28 0.23
60 38 0.31
61 5 0.04
64 2 0.02
65 49 0.40
ACGTcount: A:0.46, C:0.09, G:0.14, T:0.31
Consensus pattern (59 bp):
AAAGTTGAAAGTATCAATTTTCCTCAAAAATAAAATTATTAAAAAAAACATTTTAGGGA
Found at i:21410087 original size:17 final size:16
Alignment explanation
Indices: 21410061--21410097 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
21410051 AATTTCTCTT
*
21410061 AAAAAGAAAGATAAAAG
1 AAAAAAAAAG-TAAAAG
21410078 AAAAAAAAAGTAAAAG
1 AAAAAAAAAGTAAAAG
21410094 AAAA
1 AAAA
21410098 GGAGGGCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.81, C:0.00, G:0.14, T:0.05
Consensus pattern (16 bp):
AAAAAAAAAGTAAAAG
Found at i:21412353 original size:20 final size:20
Alignment explanation
Indices: 21412337--21412395 Score: 118
Period size: 20 Copynumber: 3.0 Consensus size: 20
21412327 GAATTTGGTG
21412337 ACAAATTCCAAAATTTGGCC
1 ACAAATTCCAAAATTTGGCC
21412357 ACAAATTCCAAAATTTGGCC
1 ACAAATTCCAAAATTTGGCC
21412377 ACAAATTCCAAAATTTGGC
1 ACAAATTCCAAAATTTGGC
21412396 ATACTTCCTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.41, C:0.24, G:0.10, T:0.25
Consensus pattern (20 bp):
ACAAATTCCAAAATTTGGCC
Found at i:21412538 original size:13 final size:14
Alignment explanation
Indices: 21412520--21412548 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
21412510 AAGTCCCAAT
21412520 GAGAGAGAAA-AAA
1 GAGAGAGAAAGAAA
21412533 GAGAGAGAAAGAAA
1 GAGAGAGAAAGAAA
21412547 GA
1 GA
21412549 AAAGTCTAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (14 bp):
GAGAGAGAAAGAAA
Found at i:21412945 original size:55 final size:54
Alignment explanation
Indices: 21412885--21413299 Score: 294
Period size: 55 Copynumber: 7.5 Consensus size: 54
21412875 TTCTTAAATT
*
21412885 TATCAATTTTTCTATAAACAAAAATAATTTAAAAAATTTGAGAAAAAAGTTGAAA
1 TATCAATTTTTCT-TAAACAAAAATAATTTAAAAAATTTGAGAAAAAAGTTAAAA
* * * * *
21412940 TATCAATTTTTCTTTAAATAAAAATAATTTTAAAATTTTGAAGAAAGAA-TTGAAA
1 TATCAATTTTTC-TTAAACAAAAATAATTTAAAAAATTTG-AGAAAAAAGTTAAAA
* * * * * *
21412995 TATAAAGTTTTCCTTAAACAAAAATAATTTTAAAAAAATT-AGGGAAAAGGTTAATA
1 TATCAA-TTTTTCTTAAACAAAAATAA-TTTAAAAAATTTGA-GAAAAAAGTTAAAA
** ** * *
21413051 TATTGATTTTTCTTTAAAACAAAAATAATTTCTAACATGT-A-AAGAAAAGTTAAAAA
1 TATCAATTTTTC-TT-AAACAAAAATAATTTAAAAAATTTGAGAA-AAAAGTT-AAAA
* * *
21413107 TATTAATTTTTCTT-AA-AAAAATAATTT-CAAAATTTGAAAAAAAAGTTAAAA
1 TATCAATTTTTCTTAAACAAAAATAATTTAAAAAATTTGAGAAAAAAGTTAAAA
** * * * *
21413158 TATCAAATTTTTCCTTAAATGAAAAT-A-GTAGCAAATTTTGAGGAAAAAGTTAAAA
1 TATC-AATTTTT-CTTAAACAAAAATAATTTA-AAAAATTTGAGAAAAAAGTTAAAA
* * * * *
21413213 TATTAATTTTTTTCTTAAAACAAAAGATAATTTAAAAATTTTGGGAAAAAAGTTGATA
1 TATCAA--TTTTTCTT-AAACAAAA-ATAATTTAAAAAATTTGAGAAAAAAGTTAAAA
21413271 TATCAATTTTT-TTAAA-ATTAAAATAATTT
1 TATCAATTTTTCTTAAACA--AAAATAATTT
21413300 CCTTCAAATA
Statistics
Matches: 288, Mismatches: 46, Indels: 53
0.74 0.12 0.14
Matches are distributed among these distances:
51 12 0.04
52 26 0.09
53 9 0.03
54 17 0.06
55 113 0.39
56 70 0.24
57 14 0.05
58 25 0.09
59 2 0.01
ACGTcount: A:0.50, C:0.05, G:0.08, T:0.37
Consensus pattern (54 bp):
TATCAATTTTTCTTAAACAAAAATAATTTAAAAAATTTGAGAAAAAAGTTAAAA
Found at i:21413392 original size:56 final size:56
Alignment explanation
Indices: 21413297--21413574 Score: 208
Period size: 56 Copynumber: 5.1 Consensus size: 56
21413287 ATTAAAATAA
* * * *
21413297 TTTCCTTCAAAT-AAAAACAAGTTT-AAAGTTTTG-GAGAAAAAGTTTAAATATTAATT
1 TTTCCTTAAAATGAAAAATAA-TTTCAAAG-TTTGAG-GAAAAAGTTGAAATATTAAAT
*
21413353 TTTCCTTAAAATGAAAAATAATTTCAAAGTTTGAGGAAAAAGTTGAAATATAAAAT
1 TTTCCTTAAAATGAAAAATAATTTCAAAGTTTGAGGAAAAAGTTGAAATATTAAAT
* * * * * * * *
21413409 TTTCCTGAAAGTGAAAAATAATTTAAAAAAGTCT--GGAAAGAGTTCAAGTA-T--CT
1 TTTCCTTAAAATGAAAAATAATTT--CAAAGTTTGAGGAAAAAGTTGAAATATTAAAT
* * * * * *
21413462 TTT-CTT---TTTAAAAATAATTTCAAAATTTAAGAAAAAAGTTGAAATATCAAAT
1 TTTCCTTAAAATGAAAAATAATTTCAAAGTTTGAGGAAAAAGTTGAAATATTAAAT
* *
21413514 TTTCCTAAAAATG-AAAATAATTTCACAATTTTGA-GAAAAAGTTGAAATATTAAA-
1 TTTCCTTAAAATGAAAAATAATTTCA-AAGTTTGAGGAAAAAGTTGAAATATTAAAT
21413568 TTTCCTT
1 TTTCCTT
21413575 TTCAAACGAT
Statistics
Matches: 173, Mismatches: 34, Indels: 32
0.72 0.14 0.13
Matches are distributed among these distances:
47 5 0.03
49 24 0.14
52 6 0.03
53 6 0.03
54 6 0.03
55 30 0.17
56 78 0.45
57 12 0.07
58 6 0.03
ACGTcount: A:0.46, C:0.08, G:0.11, T:0.35
Consensus pattern (56 bp):
TTTCCTTAAAATGAAAAATAATTTCAAAGTTTGAGGAAAAAGTTGAAATATTAAAT
Found at i:21416555 original size:23 final size:23
Alignment explanation
Indices: 21416515--21416581 Score: 66
Period size: 23 Copynumber: 3.0 Consensus size: 23
21416505 GGAAATGTGC
*
21416515 AGAAA-AAAAAAA-GCAAAAAAA
1 AGAAAGAAAAAAATGAAAAAAAA
** * *
21416536 AGAGGGAAAAAGATGAAAAAAGA
1 AGAAAGAAAAAAATGAAAAAAAA
*
21416559 AGAAAGAAAAAAATGAAATAAAA
1 AGAAAGAAAAAAATGAAAAAAAA
21416582 TAATGGGATG
Statistics
Matches: 34, Mismatches: 10, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
21 3 0.09
22 6 0.18
23 25 0.74
ACGTcount: A:0.76, C:0.01, G:0.18, T:0.04
Consensus pattern (23 bp):
AGAAAGAAAAAAATGAAAAAAAA
Found at i:21419119 original size:22 final size:22
Alignment explanation
Indices: 21419071--21419113 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
21419061 GAATGGTCTC
*
21419071 TAAGACTCCTAGGCACGATTTA
1 TAAGACTCCTAGGCACAATTTA
* *
21419093 TAAGACTTCTAGGCATAATTT
1 TAAGACTCCTAGGCACAATTT
21419114 TAAAGAACCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33
Consensus pattern (22 bp):
TAAGACTCCTAGGCACAATTTA
Found at i:21419129 original size:22 final size:22
Alignment explanation
Indices: 21419104--21419160 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
21419094 AAGACTTCTA
21419104 GGCATAATTT-TAAAGAACCTTG
1 GGCATAATTTGT-AAGAACCTTG
* *
21419126 GGCATGATTTGTAAGATCCTTG
1 GGCATAATTTGTAAGAACCTTG
21419148 GGCATAA-TTGTAA
1 GGCATAATTTGTAA
21419161 TCACCTTTGG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.19
22 24 0.77
23 1 0.03
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.33
Consensus pattern (22 bp):
GGCATAATTTGTAAGAACCTTG
Found at i:21419167 original size:21 final size:21
Alignment explanation
Indices: 21419120--21419173 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
21419110 ATTTTAAAGA
* *
21419120 ACCTTGGGCATGATTTGTAAG
1 ACCTTGGGCATGAATTGTAAC
21419141 ATCCTTGGGCAT-AATTGTAATC
1 A-CCTTGGGCATGAATTGTAA-C
21419163 ACCTTTGGGCA
1 ACC-TTGGGCA
21419174 CGATTGTTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
21 10 0.36
22 18 0.64
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (21 bp):
ACCTTGGGCATGAATTGTAAC
Found at i:21419908 original size:11 final size:10
Alignment explanation
Indices: 21419873--21419900 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
21419863 ATGAAAATCC
21419873 AAAAATTTTT
1 AAAAATTTTT
21419883 AAAAATTTTT
1 AAAAATTTTT
21419893 AAAAATTT
1 AAAAATTT
21419901 CTGAAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
AAAAATTTTT
Found at i:21422845 original size:3 final size:3
Alignment explanation
Indices: 21422837--21422883 Score: 67
Period size: 3 Copynumber: 15.7 Consensus size: 3
21422827 TTTATAATTA
* **
21422837 AAT AAT AAT AAT ACT AAT AAT AAT AAT AAT AAT TGT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
21422884 CAAGGTATTT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:21425730 original size:55 final size:56
Alignment explanation
Indices: 21425628--21425733 Score: 133
Period size: 55 Copynumber: 1.9 Consensus size: 56
21425618 TAAAAAAAAA
* * * * * * *
21425628 TGTAAGAGGATTATTGAAGGTATTTTTGGCTAGAAACACCTTGAATAATCCCATTT
1 TGTAAGAGGATTATTCAAGGCATTTCTAGCCAAAAACACCTTCAATAATCCCATTT
*
21425684 TGTAAG-GGATTATTCAAGGCATTTCTAGCCAAAAACGCCTTCAATAATCC
1 TGTAAGAGGATTATTCAAGGCATTTCTAGCCAAAAACACCTTCAATAATCC
21425734 TTAATAAAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
55 36 0.86
56 6 0.14
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (56 bp):
TGTAAGAGGATTATTCAAGGCATTTCTAGCCAAAAACACCTTCAATAATCCCATTT
Found at i:21425786 original size:117 final size:115
Alignment explanation
Indices: 21425590--21425799 Score: 296
Period size: 117 Copynumber: 1.8 Consensus size: 115
21425580 ATTCATTGTG
* * * *
21425590 TTTCTAGCTAAAAACGCCTTGAATAATCTAAAAAAAAATGTAAGAGGATTATTGAAGGTATTTTT
1 TTTCTAGCCAAAAACGCCTTCAATAATCTAAAAAAAAATGTAAGAGGATTATTCAAGGCATTTTT
* * *
21425655 GGCTAGAAACACCTTGAATAATCCCATTTTGTAAGGGATTATTCAAGGCA
66 AGCCAGAAACACCTTAAATAATCCCATTTTGTAAGGGATTATTCAAGGCA
* * *
21425705 TTTCTAGCCAAAAACGCCTTCAATAATCCTTAATAAAAAATTGT-AGGGGATTATTCAAGGCGTT
1 TTTCTAGCCAAAAACGCCTTCAATAAT-C-TAA-AAAAAAATGTAAGAGGATTATTCAAGGCATT
21425769 TTTAGCCAGAAACACCTTAAATAATCCCATT
63 TTTAGCCAGAAACACCTTAAATAATCCCATT
21425800 CAATTTTTTG
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
115 25 0.30
116 1 0.01
117 47 0.57
118 9 0.11
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (115 bp):
TTTCTAGCCAAAAACGCCTTCAATAATCTAAAAAAAAATGTAAGAGGATTATTCAAGGCATTTTT
AGCCAGAAACACCTTAAATAATCCCATTTTGTAAGGGATTATTCAAGGCA
Found at i:21425811 original size:62 final size:62
Alignment explanation
Indices: 21425680--21425857 Score: 178
Period size: 62 Copynumber: 2.9 Consensus size: 62
21425670 GAATAATCCC
* * * *
21425680 ATTTTGTAAGGGATTATTCAAGGCATTTCTAGCCAAAAACGCCTTCAATAATCCTTAATAAA
1 ATTTTGTAAGGGATTATTCAAGGCGTTTCTAGCCAAAAACACCTTAAATAATCCTCAATAAA
** * * * * *
21425742 AAATTGTAGGGGATTATTCAAGGCGTTTTTAGCCAGAAACACCTTAAATAATCC-CATTCAAT
1 ATTTTGTAAGGGATTATTCAAGGCGTTTCTAGCCAAAAACACCTTAAATAATCCTCAAT-AAA
* * *** * *
21425804 TTTTTGTAAAGGATTATTCAACATGTTTCTAGCCAAAAATACCTTGAATAATCC
1 ATTTTGTAAGGGATTATTCAAGGCGTTTCTAGCCAAAAACACCTTAAATAATCC
21425858 AAAAAAAATG
Statistics
Matches: 92, Mismatches: 23, Indels: 2
0.79 0.20 0.02
Matches are distributed among these distances:
61 2 0.02
62 90 0.98
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.33
Consensus pattern (62 bp):
ATTTTGTAAGGGATTATTCAAGGCGTTTCTAGCCAAAAACACCTTAAATAATCCTCAATAAA
Found at i:21426693 original size:15 final size:15
Alignment explanation
Indices: 21426673--21426707 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
21426663 TAAACAGCTA
*
21426673 TTTGTCAAATGTTTT
1 TTTGTCAAATATTTT
21426688 TTTGTCAAATATTTT
1 TTTGTCAAATATTTT
21426703 TTTGT
1 TTTGT
21426708 TTTTGTTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.20, C:0.06, G:0.11, T:0.63
Consensus pattern (15 bp):
TTTGTCAAATATTTT
Found at i:21432697 original size:162 final size:161
Alignment explanation
Indices: 21432217--21433047 Score: 704
Period size: 162 Copynumber: 5.1 Consensus size: 161
21432207 TATTTTTTTG
* * **** *
21432217 TTTTAATAGTTT-GAATAGCTTCAATACATTATATTAAACTTGCCCAAATGATTGAACTTGGTTT
1 TTTTAACAGTTTAG-ATAGCTTCAATACATGATATTAAACTTGTTTGAATGATTGAACTTAGTTT
* * * * * *
21432281 CTATGGTTGATATGTGTGAAAAA-TTACTGTTTATATCTTTTTAGAATTTTGTTATGCCGTT-AA
65 CCATGATTGATATGTGTGAAAAAGTTACCGTTTATGTCTATTTAGACTTTT-TTATGCCGTTAAA
* ** * **
21432344 AGGGCAAAACTATAAATATGCAATTA-TATT-TA
129 AGGCCAAAA-TGCAAATTTATAATTATTATTCTA
** *
21432376 TGTTTTAACAGTTTAGATAGCTT-AGATACATGATATTAAACTTGTTCAAATGATTGAACTTGGT
1 --TTTTAACAGTTTAGATAGCTTCA-ATACATGATATTAAACTTGTTTGAATGATTGAACTTAGT
** * * *
21432440 TTCCATGATTG--ATGTGTGAAAAAGTTATTGTTTATGTCTGTTTATCACTTTTTTGTGCCGTTA
63 TTCCATGATTGATATGTGTGAAAAAGTTACCGTTTATGTCTATTTA-GACTTTTTTATGCCGTTA
* * * *
21432503 GAAGGCCAAAATGCAAATTTGCT-TTTATTATTCCA
127 AAAGGCCAAAATGCAAATTT-ATAATTATTATTCTA
21432538 TTTTAACAGTTTAGATAGCTTCAATA-ACTGATATTAAACTTGTTTGAATGATTGAACTTAGTTT
1 TTTTAACAGTTTAGATAGCTTCAATACA-TGATATTAAACTTGTTTGAATGATTGAACTTAGTTT
* ** * * *
21432602 GCACAATTGATATATGTGAAAAAGTTACCGTTTATATCTATTTAGCATTTTTTTATGCCGTTAAA
65 CCATGATTGATATGTGTGAAAAAGTTACCGTTTATGTCTATTTAG-ACTTTTTTATGCCGTTAAA
** *
21432667 AGGCCAAAATGCAAATTTATGTTTATTATTCTG
129 AGGCCAAAATGCAAATTTATAATTATTATTCTA
* * * * * * *
21432700 TTTTGATAGTTTAGATAGCTGCAATACATGATATTAAACTTATCTAAATGATTGTTTGAACTTAT
1 TTTTAACAGTTTAGATAGCTTCAATACATGATATTAAACTTGT-T---TGAATGATTGAACTTAG
* * * * * * * **
21432765 TTTCCATGGTTTATATGTGTGAAAATGTTACCATTTATGTCTTTTTAAGACTTTGTTACGCTATT
62 TTTCCATGATTGATATGTGTGAAAAAGTTACCGTTTATGTCTATTT-AGACTTTTTTATGCCGTT
* * ** * *
21432830 AAAGGGCAAAAATATAATTTTACAATTA-TATT-TA
126 AAAAGGCCAAAATGCAAATTTATAATTATTATTCTA
* * *
21432864 TGTTTTAATAGTTTAGATAGCTTCAATACATGATATTAAACTTGTCTGAATGATTGAA-TTTGTT
1 --TTTTAACAGTTTAGATAGCTTCAATACATGATATTAAACTTGTTTGAATGATTGAACTTAG-T
* * * *
21432928 TTCCATGATTTGATATGTATGAATAAGTTA-CGATTTATGTTTATTTAGAAC-TTTTTGT-CACG
63 TTCCATGA-TTGATATGTGTGAAAAAGTTACCG-TTTATGTCTATTTAG-ACTTTTTTATGC-CG
* * *
21432990 TTAAAAGACAAAAATGCAAATTTATAATTATTGTTCTA
124 TTAAAAGGCCAAAATGCAAATTTATAATTATTATTCTA
21433028 TTTTAACAGTTTAGATAGCT
1 TTTTAACAGTTTAGATAGCT
21433048 CCTATTACCT
Statistics
Matches: 542, Mismatches: 99, Indels: 57
0.78 0.14 0.08
Matches are distributed among these distances:
159 13 0.02
160 99 0.18
161 86 0.16
162 179 0.33
163 35 0.06
164 3 0.01
165 4 0.01
166 121 0.22
167 2 0.00
ACGTcount: A:0.32, C:0.10, G:0.15, T:0.43
Consensus pattern (161 bp):
TTTTAACAGTTTAGATAGCTTCAATACATGATATTAAACTTGTTTGAATGATTGAACTTAGTTTC
CATGATTGATATGTGTGAAAAAGTTACCGTTTATGTCTATTTAGACTTTTTTATGCCGTTAAAAG
GCCAAAATGCAAATTTATAATTATTATTCTA
Found at i:21432918 original size:328 final size:320
Alignment explanation
Indices: 21432206--21433048 Score: 773
Period size: 328 Copynumber: 2.6 Consensus size: 320
21432196 AAATATGTAG
* * * * **
21432206 TTATTTTTTTGTTTTAATAGTTT-GAATAGCTTCAATACATTATATTAAACTTGCCCAAATGATT
1 TTATATTTATGTTTTAATAGTTTAG-ATAGCTTCAATACATGATATTAAACTTGTCTGAATGATT
* *** * * *
21432270 GAACTTGGTTTCTATGGTTGATATGTGTGAAAAA-TTACTGTTTATATCTTTTTAGAATTTTGTT
65 GAACTTAGTTTC-ACAATTGATATGTGTGAAAAAGTTACCGTTTATATCTATTTAG-ATTTTTTT
* ** *
21432334 ATGCCGTT-AAAGGGCAAAACTATAAA--TATGCAATTA-TATTTATGTTTTAACAGTTTAGATA
128 ATGCCGTTAAAAGGCCAAAA-TGCAAATTTATG--ATTATTA-TTCTGTTTTAACAGTTTAGATA
* * *
21432395 GCTTAGATACATGATATTAAACTTGTTCAAATGATTGAACTTGGTTTCCATGATTGATGTGTGAA
189 GCTCAGATACATGATATTAAACTTATTCAAATGATTGAACTTAGTTTCCATGATTGATGTGTGAA
*** * * ** * * * *
21432460 AAAGTTATTGTTTATGTCTGTTTATCACTTTTTTGTGCCGTTAGAAGGCCAAAATGCAAATTTGC
254 AAAGTTACCATTTATGTCTGTTTAACACTTTGTTACGCCATTAGAAGGCAAAAATACAAATTTAC
**
21432525 TT
319 AA
* * *
21432527 TTATTATTCCA--TTTTAACAGTTTAGATAGCTTCAATA-ACTGATATTAAACTTGTTTGAATGA
1 TTA-TATT-TATGTTTTAATAGTTTAGATAGCTTCAATACA-TGATATTAAACTTGTCTGAATGA
*
21432589 TTGAACTTAGTTTGCACAATTGATATATGTGAAAAAGTTACCGTTTATATCTATTTAGCATTTTT
63 TTGAACTTAGTTT-CACAATTGATATGTGTGAAAAAGTTACCGTTTATATCTATTTAG-ATTTTT
* * *
21432654 TTATGCCGTTAAAAGGCCAAAATGCAAATTTATGTTTATTATTCTGTTTTGATAGTTTAGATAGC
126 TTATGCCGTTAAAAGGCCAAAATGCAAATTTATGATTATTATTCTGTTTTAACAGTTTAGATAGC
* * *
21432719 TGCA-ATACATGATATTAAACTTA-TCTAAATGATTGTTTGAACTTATTTTCCATGGTTTATATG
191 T-CAGATACATGATATTAAACTTATTC-AAATGA----TTGAACTTAGTTTCCAT-GATT-GATG
* * * * *
21432782 TGTGAAAATGTTACCATTTATGTCTTTTTAAGACTTTGTTACGCTATTA-AAGGGCAAAAATATA
248 TGTGAAAAAGTTACCATTTATGTCTGTTTAACACTTTGTTACGCCATTAGAA-GGCAAAAATACA
*
21432846 ATTTTACAA
312 AATTTACAA
21432855 TTATATTTATGTTTTAATAGTTTAGATAGCTTCAATACATGATATTAAACTTGTCTGAATGATTG
1 TTATATTTATGTTTTAATAGTTTAGATAGCTTCAATACATGATATTAAACTTGTCTGAATGATTG
* * * * * **
21432920 AA-TTTGTTTTC-CATGATTTGATATGTATGAATAAGTTA-CGATTTATGTTTATTTAGAACTTT
66 AACTTAG-TTTCACA--A-TTGATATGTGTGAAAAAGTTACCG-TTTATATCTATTTAGATTTTT
* * * * * *
21432982 TTGT-CACGTTAAAAGACAAAAATGCAAATTTATAATTATTGTTCTATTTTAACAGTTTAGATAG
126 TTATGC-CGTTAAAAGGCCAAAATGCAAATTTATGATTATTATTCTGTTTTAACAGTTTAGATAG
21433046 CTC
190 CTC
21433049 CTATTACCTT
Statistics
Matches: 424, Mismatches: 70, Indels: 50
0.78 0.13 0.09
Matches are distributed among these distances:
320 1 0.00
321 75 0.18
322 92 0.22
323 13 0.03
324 4 0.01
326 18 0.04
327 15 0.04
328 174 0.41
329 32 0.08
ACGTcount: A:0.32, C:0.10, G:0.15, T:0.43
Consensus pattern (320 bp):
TTATATTTATGTTTTAATAGTTTAGATAGCTTCAATACATGATATTAAACTTGTCTGAATGATTG
AACTTAGTTTCACAATTGATATGTGTGAAAAAGTTACCGTTTATATCTATTTAGATTTTTTTATG
CCGTTAAAAGGCCAAAATGCAAATTTATGATTATTATTCTGTTTTAACAGTTTAGATAGCTCAGA
TACATGATATTAAACTTATTCAAATGATTGAACTTAGTTTCCATGATTGATGTGTGAAAAAGTTA
CCATTTATGTCTGTTTAACACTTTGTTACGCCATTAGAAGGCAAAAATACAAATTTACAA
Found at i:21434623 original size:9 final size:9
Alignment explanation
Indices: 21434609--21434642 Score: 50
Period size: 9 Copynumber: 3.6 Consensus size: 9
21434599 ATTTTTTTCT
21434609 TAAAATATA
1 TAAAATATA
21434618 TAAAATATA
1 TAAAATATA
21434627 TTAATAATATA
1 -TAA-AATATA
21434638 TAAAA
1 TAAAA
21434643 AACATTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
9 11 0.48
10 6 0.26
11 6 0.26
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (9 bp):
TAAAATATA
Found at i:21435004 original size:9 final size:9
Alignment explanation
Indices: 21434974--21435007 Score: 50
Period size: 9 Copynumber: 3.6 Consensus size: 9
21434964 TAAAAATCTT
21434974 TTTTATATA
1 TTTTATATA
21434983 TTATTAGTATA
1 TT-TTA-TATA
21434994 TTTTATATA
1 TTTTATATA
21435003 TTTTA
1 TTTTA
21435008 AGAAAATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
9 11 0.48
10 6 0.26
11 6 0.26
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (9 bp):
TTTTATATA
Found at i:21435412 original size:26 final size:27
Alignment explanation
Indices: 21435376--21435432 Score: 107
Period size: 26 Copynumber: 2.1 Consensus size: 27
21435366 CAGCTAGAAG
21435376 GTAAACATATATTAATG-AAAAAAAAA
1 GTAAACATATATTAATGAAAAAAAAAA
21435402 GTAAACATATATTAATGAAAAAAAAAA
1 GTAAACATATATTAATGAAAAAAAAAA
21435429 GTAA
1 GTAA
21435433 GTAAATGCTA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 17 0.57
27 13 0.43
ACGTcount: A:0.65, C:0.04, G:0.09, T:0.23
Consensus pattern (27 bp):
GTAAACATATATTAATGAAAAAAAAAA
Found at i:21440124 original size:21 final size:22
Alignment explanation
Indices: 21440078--21440124 Score: 53
Period size: 23 Copynumber: 2.2 Consensus size: 22
21440068 TTTTGGTATG
* *
21440078 ATTTTTATGAAAATAGATGAAG
1 ATTTTTAAGAAAATAGATGAAA
21440100 ATTTTGTAAGAAAATA-A-GAAA
1 ATTTT-TAAGAAAATAGATGAAA
21440121 ATTT
1 ATTT
21440125 AAAGATTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 7 0.32
22 6 0.27
23 9 0.41
ACGTcount: A:0.49, C:0.00, G:0.15, T:0.36
Consensus pattern (22 bp):
ATTTTTAAGAAAATAGATGAAA
Found at i:21447368 original size:21 final size:19
Alignment explanation
Indices: 21447344--21447387 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 19
21447334 CCTGATGATC
21447344 CCCTATCCTAGGTGATCAAT
1 CCCTAT-CTAGGTGATCAAT
*
21447364 GCCCTATGTAGGTGATCAAT
1 -CCCTATCTAGGTGATCAAT
21447384 CCCT
1 CCCT
21447388 TCTGCAAACT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.18
20 12 0.55
21 6 0.27
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.30
Consensus pattern (19 bp):
CCCTATCTAGGTGATCAAT
Found at i:21450631 original size:21 final size:21
Alignment explanation
Indices: 21450606--21450660 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
21450596 ATCACTAAAT
*
21450606 TTAATCTTATTTTTACAATAA
1 TTAATCTCATTTTTACAATAA
* *
21450627 TTAATCTCATTATTATAATAA
1 TTAATCTCATTTTTACAATAA
21450648 TTAATCTCATTTT
1 TTAATCTCATTTT
21450661 CATCTTTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.36, C:0.11, G:0.00, T:0.53
Consensus pattern (21 bp):
TTAATCTCATTTTTACAATAA
Found at i:21457335 original size:18 final size:19
Alignment explanation
Indices: 21457301--21457341 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
21457291 TGTTTTTTTT
21457301 TTTTGTTTTACTATA-TTA
1 TTTTGTTTTACTATATTTA
*
21457319 TTTTGATTTTA-TTTATTTA
1 TTTTG-TTTTACTATATTTA
21457338 TTTT
1 TTTT
21457342 TCCTTTTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.20, C:0.02, G:0.05, T:0.73
Consensus pattern (19 bp):
TTTTGTTTTACTATATTTA
Found at i:21457741 original size:85 final size:87
Alignment explanation
Indices: 21457643--21457811 Score: 225
Period size: 86 Copynumber: 2.0 Consensus size: 87
21457633 TCTCAAAATT
* * * *
21457643 AAATCTTATCAAACTATTGGAAGGTTTAATTATCTTTTT-CAAAAAAATAAAAATTTGAAATTAA
1 AAATCTTACCAAACTATTAGAAGGTTTAATTATCTTTTTGCAAAAAAATAAAAATTTAAAATCAA
21457707 TCCTACCAAACTATTAAAATCA
66 TCCTACCAAACTATTAAAATCA
* * * * **
21457729 AAAT-TTACCAAACTATTAGAAGGTTTAATTATTTTTTTGCAAGATAATGAATTTTTAAAATCAA
1 AAATCTTACCAAACTATTAGAAGGTTTAATTATCTTTTTGCAAAAAAATAAAAATTTAAAATCAA
*
21457793 TCTTACCAAACTATTAAAA
66 TCCTACCAAACTATTAAAA
21457812 GATATATTTC
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
85 31 0.44
86 40 0.56
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.37
Consensus pattern (87 bp):
AAATCTTACCAAACTATTAGAAGGTTTAATTATCTTTTTGCAAAAAAATAAAAATTTAAAATCAA
TCCTACCAAACTATTAAAATCA
Found at i:21459080 original size:6 final size:6
Alignment explanation
Indices: 21459071--21459187 Score: 52
Period size: 6 Copynumber: 19.7 Consensus size: 6
21459061 AAGTAATAGG
* *
21459071 TAAAGA TAAAATA ATAAAGA TAAAGA TAAAGA TAAATA -AGAAG- TAAA-A
1 TAAAGA T-AAAGA -TAAAGA TAAAGA TAAAGA TAAAGA TA-AAGA TAAAGA
* * *
21459119 TAAA-A TAAAGA TCAATGAAA TAGAGA TAAAAAA TAAAGA T-AA-A TAAA-A
1 TAAAGA TAAAGA T-AA--AGA TAAAGA T-AAAGA TAAAGA TAAAGA TAAAGA
* *
21459167 TAAAAA T-AATA TAAAGA TAAA
1 TAAAGA TAAAGA TAAAGA TAAA
21459188 TAAAATAAAA
Statistics
Matches: 86, Mismatches: 12, Indels: 26
0.69 0.10 0.21
Matches are distributed among these distances:
4 2 0.02
5 25 0.29
6 40 0.47
7 14 0.16
8 2 0.02
9 3 0.03
ACGTcount: A:0.69, C:0.01, G:0.10, T:0.20
Consensus pattern (6 bp):
TAAAGA
Found at i:21459085 original size:18 final size:19
Alignment explanation
Indices: 21459054--21459126 Score: 62
Period size: 20 Copynumber: 3.7 Consensus size: 19
21459044 TCAAAGACAA
*
21459054 AAAGA-AAAAGTAAT-AGGT
1 AAAGATAAAA-TAATAAGAT
21459072 AAAGATAAAATAATAAAGAT
1 AAAGATAAAATAAT-AAGAT
21459092 AAAGATAAAGATAAATAAGAAGT
1 AAAGATAAA-AT-AATAAG-A-T
21459115 AAA-ATAAAATAA
1 AAAGATAAAATAA
21459127 AGATCAATGA
Statistics
Matches: 47, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
18 9 0.19
19 4 0.09
20 14 0.30
21 7 0.15
22 9 0.19
23 4 0.09
ACGTcount: A:0.68, C:0.00, G:0.14, T:0.18
Consensus pattern (19 bp):
AAAGATAAAATAATAAGAT
Found at i:21459099 original size:15 final size:14
Alignment explanation
Indices: 21459071--21459242 Score: 101
Period size: 15 Copynumber: 12.1 Consensus size: 14
21459061 AAGTAATAGG
21459071 TAAAGATAAA-ATAA
1 TAAA-ATAAAGATAA
21459085 TAAAGATAAAGATAAA
1 TAAA-ATAAAGAT-AA
* *
21459101 GATAAATAAGAAGTAAAA
1 TA-AAAT-A-AAG-ATAA
21459119 TAAAATAAAGATCAA
1 TAAAATAAAGAT-AA
* *
21459134 TGAAATAGAGATAA
1 TAAAATAAAGATAA
21459148 -AAAATAAAGATAAA
1 TAAAATAAAGAT-AA
21459162 TAAAAT-AA-A-AA
1 TAAAATAAAGATAA
*
21459173 TAATATAAAGATAAA
1 TAAAATAAAGAT-AA
21459188 TAAAATAAA-ATAA
1 TAAAATAAAGATAA
*
21459201 -ATAAAT-AA-TTAA
1 TA-AAATAAAGATAA
*
21459213 TAATATAAAGATACA
1 TAAAATAAAGATA-A
*
21459228 TAAAATAAAAATAA
1 TAAAATAAAGATAA
21459242 T
1 T
21459243 GATAAATACA
Statistics
Matches: 125, Mismatches: 15, Indels: 36
0.71 0.09 0.20
Matches are distributed among these distances:
11 7 0.06
12 11 0.09
13 20 0.16
14 23 0.18
15 44 0.35
16 6 0.05
17 7 0.06
18 6 0.05
19 1 0.01
ACGTcount: A:0.69, C:0.01, G:0.08, T:0.22
Consensus pattern (14 bp):
TAAAATAAAGATAA
Found at i:21459186 original size:26 final size:26
Alignment explanation
Indices: 21459071--21459205 Score: 136
Period size: 26 Copynumber: 5.2 Consensus size: 26
21459061 AAGTAATAGG
* *
21459071 TAAAGATAAA-ATAATAAAGATAAAGA
1 TAAAGATAAATAAAATAAAAATAAA-A
21459097 TAAAGATAAATAAGAAGT-AAAATAAAA
1 TAAAGATAAATAA-AA-TAAAAATAAAA
* *
21459124 TAAAGATCAATGAAATAGAGATAA-AAAA
1 TAAAGATAAATAAAATA-A-A-AATAAAA
*
21459152 TAAAGATAAATAAAATAAAAATAATA
1 TAAAGATAAATAAAATAAAAATAAAA
21459178 TAAAGATAAATAAAAT-AAAAT-AAA
1 TAAAGATAAATAAAATAAAAATAAAA
21459202 TAAA
1 TAAA
21459206 TAATTAATAA
Statistics
Matches: 93, Mismatches: 8, Indels: 18
0.78 0.07 0.15
Matches are distributed among these distances:
24 6 0.06
25 8 0.09
26 32 0.34
27 15 0.16
28 29 0.31
29 3 0.03
ACGTcount: A:0.70, C:0.01, G:0.09, T:0.20
Consensus pattern (26 bp):
TAAAGATAAATAAAATAAAAATAAAA
Found at i:21459215 original size:40 final size:40
Alignment explanation
Indices: 21459096--21459237 Score: 150
Period size: 40 Copynumber: 3.5 Consensus size: 40
21459086 AAAGATAAAG
* *
21459096 ATAAAGATAAATAAGAAGTAAAATAAAATAAA-GATCAATGAA-
1 ATAAAGATAAATAA-AA-TAAAAT-AAATAAATAATAAAT-AAT
*
21459138 ATAGAGAT-AA-AAAATAAAGATAAATAAAATAA-AAATAAT
1 ATAAAGATAAATAAAATAAA-ATAAAT-AAATAATAAATAAT
*
21459177 ATAAAGATAAATAAAATAAAATAAATAAATAATTAATAAT
1 ATAAAGATAAATAAAATAAAATAAATAAATAATAAATAAT
*
21459217 ATAAAGATACATAAAATAAAA
1 ATAAAGATAAATAAAATAAAA
21459238 ATAATGATAA
Statistics
Matches: 87, Mismatches: 6, Indels: 16
0.80 0.06 0.15
Matches are distributed among these distances:
38 10 0.11
39 23 0.26
40 37 0.43
41 10 0.11
42 7 0.08
ACGTcount: A:0.70, C:0.01, G:0.07, T:0.22
Consensus pattern (40 bp):
ATAAAGATAAATAAAATAAAATAAATAAATAATAAATAAT
Found at i:21459235 original size:81 final size:81
Alignment explanation
Indices: 21459071--21459241 Score: 199
Period size: 81 Copynumber: 2.1 Consensus size: 81
21459061 AAGTAATAGG
* * *
21459071 TAAAGATAAAATAATAAAGATAAAGATAAAGATAAATAAGAAGTAAAATAAAATAAAGATCAATG
1 TAAAGATAAAAAAATAAAAATAAAGATAAAGATAAATAAGAAGTAAAATAAAATAAAAATCAATG
*
21459136 AAATAGAGATAAAAAA
66 AAATAAAGATAAAAAA
* *
21459152 TAAAGATAAATAAAATAAAAAT-AATATAAAGATAAATAA-AA-TAAAAT-AAATAAATAATTAA
1 TAAAGATAAA-AAAATAAAAATAAAGATAAAGATAAATAAGAAGTAAAATAAAATAAA-AATCAA
21459213 T-AATATAAAGATACATAAAA
64 TGAA-ATAAAGATA-A-AAAA
*
21459233 TAAAAATAA
1 TAAAGATAA
21459242 TGATAAATAC
Statistics
Matches: 78, Mismatches: 7, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
78 9 0.12
79 19 0.24
80 3 0.04
81 38 0.49
82 9 0.12
ACGTcount: A:0.70, C:0.01, G:0.08, T:0.22
Consensus pattern (81 bp):
TAAAGATAAAAAAATAAAAATAAAGATAAAGATAAATAAGAAGTAAAATAAAATAAAAATCAATG
AAATAAAGATAAAAAA
Found at i:21459242 original size:26 final size:24
Alignment explanation
Indices: 21459144--21459241 Score: 69
Period size: 25 Copynumber: 4.0 Consensus size: 24
21459134 TGAAATAGAG
21459144 ATAAAA-AATAAAGAT--AAATAAA
1 ATAAAATAATAAA-ATAAAAATAAA
* *
21459166 ATAAAAATAATATAAAGATAAATAAA
1 AT-AAAATAATA-AAATAAAAATAAA
* *
21459192 ATAAAATAA-ATAAATAATTAATAAT
1 ATAAAATAATA-AAATAA-AAATAAA
21459217 ATAAAGATACATAAAATAAAAATAA
1 ATAAA-ATA-ATAAAATAAAAATAA
21459242 TGATAAATAC
Statistics
Matches: 61, Mismatches: 6, Indels: 14
0.75 0.07 0.17
Matches are distributed among these distances:
22 2 0.03
23 4 0.07
24 11 0.18
25 19 0.31
26 17 0.28
27 7 0.11
28 1 0.02
ACGTcount: A:0.72, C:0.01, G:0.03, T:0.23
Consensus pattern (24 bp):
ATAAAATAATAAAATAAAAATAAA
Found at i:21461913 original size:23 final size:25
Alignment explanation
Indices: 21461881--21461933 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
21461871 CATATGTTAG
*
21461881 TCAAATATATG-AAGT-AAGCACAA
1 TCAAACATATGCAAGTCAAGCACAA
*
21461904 TCAAACATATGCATGTCAAGCACAA
1 TCAAACATATGCAAGTCAAGCACAA
*
21461929 ACAAA
1 TCAAA
21461934 TTTGTCCATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 10 0.40
24 3 0.12
25 12 0.48
ACGTcount: A:0.51, C:0.19, G:0.11, T:0.19
Consensus pattern (25 bp):
TCAAACATATGCAAGTCAAGCACAA
Found at i:21463442 original size:39 final size:39
Alignment explanation
Indices: 21463397--21463473 Score: 120
Period size: 39 Copynumber: 2.0 Consensus size: 39
21463387 TGAATTTTTA
*
21463397 ATGAAATA-CCTTAAAAGATTTCAAAATTTTCAATGAAAG
1 ATGAAATATCCTTAAAA-ACTTCAAAATTTTCAATGAAAG
*
21463436 ATGAAATATCTTTAAAAACTTCAAAATTTTCAATGAAA
1 ATGAAATATCCTTAAAAACTTCAAAATTTTCAATGAAA
21463474 ATTTTGTCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
39 28 0.80
40 7 0.20
ACGTcount: A:0.49, C:0.10, G:0.08, T:0.32
Consensus pattern (39 bp):
ATGAAATATCCTTAAAAACTTCAAAATTTTCAATGAAAG
Found at i:21465964 original size:160 final size:159
Alignment explanation
Indices: 21465283--21466063 Score: 637
Period size: 160 Copynumber: 4.9 Consensus size: 159
21465273 ATAAATAGTC
* * * * ** * * *
21465283 CTAAAAACATATAAATCATAACATTTTCACACATATAAAGTGTGACAACCAAGTTCAACCATTTG
1 CTAAACACATATAAACCATAACATTTTCACACATATCAAGCGTGGTAGCAAAGTTCAACCATTCG
* * * * * *
21465348 AACAAATTTAATATCATATATTGGAGCTAGCTAAACTATTCAAACATAAATATAATAGCAATTTT
66 AACAAGTTTAATATCATGTATTGGAGCTATCTAAACTATTAAAATAGAAATATAATAGCAA-TTT
* *
21465413 ACATTTTTGCCCTTTCACA-GCACAAAATGT
130 ACATTTTTGCCCTTTGACATGCAAAAAAT-T
* * * * * * *
21465443 CCTAAA-A-ACACAAACCATAATATTTTCATATATATCAAGCGTGGCAGTCAAA-TTCAAACATT
1 -CTAAACACATATAAACCATAACATTTTCACACATATCAAGCGTGGTAG-CAAAGTTCAACCATT
* * **
21465505 CGAACAAGTTTAATATAATGTATTGGAGCTA-CTAAATTATTAAACAT--AAATATACCAGCCAA
64 CGAACAAGTTTAATATCATGTATTGGAGCTATCTAAACTATTAAA-ATAGAAATATAATAG-CAA
* *
21465567 TTTACATTTTTGCCCTTTGA-TTGCACAAAAAGTC
127 TTTACATTTTTGCCCTTTGACATGCA-AAAAA-TT
* * * * * * * ** *
21465601 CCAAATTAC--ATAAACCGTAACACTTTCACACATATTAAACGTGGTAGCCAAGTTCAATAATTT
1 CTAAA-CACATATAAACCATAACATTTTCACACATATCAAGCGTGGTAGCAAAGTTCAACCATTC
* * * * *
21465664 GGATAAGTTTAATATCATGTATTGGAGCTATCTAAACCA-T----TAGAAATATAGTAGAAAATT
65 GAACAAGTTTAATATCATGTATTGGAGCTATCTAAACTATTAAAATAGAAATATAATAG-CAATT
* * *
21465724 TACATTTTTACCATTT-A-ATGGCACAAAAAGT
129 TACATTTTTGCCCTTTGACAT-GCA-AAAAATT
* *
21465755 CATAAACAC-TCATAAACCATAACATTTTCACACATATCAAGCATGGTAGCAAAGTTCAATCATT
1 C-TAAACACAT-ATAAACCATAACATTTTCACACATATCAAGCGTGGTAGCAAAGTTCAACCATT
* * * * * *
21465819 CAAACAGGTTTAATATTATGTATTTGAGCTATCTAAGCTATTAAAATAGAAATATAATAGTAATT
64 CGAACAAGTTTAATATCATGTATTGGAGCTATCTAAACTATTAAAATAGAAATATAATAGCAATT
* *
21465884 TATATTTTTGTCCTTTGACGATGCAAAAAATT
129 TACATTTTTGCCCTTTGAC-ATGCAAAAAATT
** **
21465916 CTAAACACATATAAACTGTAACATTTTCACACATATCAAGCGTGGTAGCTGAGTTCAACCATTC-
1 CTAAACACATATAAACCATAACATTTTCACACATATCAAGCGTGGTAGCAAAGTTCAACCATTCG
* * * * * * *
21465980 AAGCAACTTTACTATCATGTATTCGAGCTATCTAATCTATTAAAAGAAAAATATAATAACAAGTT
66 AA-CAAGTTTAATATCATGTATTGGAGCTATCTAAACTATTAAAATAGAAATATAATAGCAA-TT
* *
21466045 TATATTTTTGCCTTTTGAC
129 TACATTTTTGCCCTTTGAC
21466064 GACACAAAAA
Statistics
Matches: 496, Mismatches: 96, Indels: 56
0.77 0.15 0.09
Matches are distributed among these distances:
153 1 0.00
154 5 0.01
155 39 0.08
156 77 0.16
157 39 0.08
158 83 0.17
159 77 0.16
160 124 0.25
161 46 0.09
162 3 0.01
163 2 0.00
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.32
Consensus pattern (159 bp):
CTAAACACATATAAACCATAACATTTTCACACATATCAAGCGTGGTAGCAAAGTTCAACCATTCG
AACAAGTTTAATATCATGTATTGGAGCTATCTAAACTATTAAAATAGAAATATAATAGCAATTTA
CATTTTTGCCCTTTGACATGCAAAAAATT
Found at i:21467156 original size:14 final size:15
Alignment explanation
Indices: 21467137--21467165 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
21467127 TATTTTTTAT
21467137 ATTTACTCC-TGTCA
1 ATTTACTCCTTGTCA
21467151 ATTTACTCCTTGTCA
1 ATTTACTCCTTGTCA
21467166 TTCTAACTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.21, C:0.28, G:0.07, T:0.45
Consensus pattern (15 bp):
ATTTACTCCTTGTCA
Found at i:21468691 original size:2 final size:2
Alignment explanation
Indices: 21468684--21468723 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
21468674 TACACAGATA
21468684 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
21468724 GGAAGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:21470103 original size:17 final size:17
Alignment explanation
Indices: 21470081--21470113 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
21470071 TTCTAATTAA
21470081 TATATTGTTT-TTTGCCT
1 TATATT-TTTCTTTGCCT
21470098 TATATTTTTCTTTGCC
1 TATATTTTTCTTTGCC
21470114 AATTTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.12, C:0.15, G:0.09, T:0.64
Consensus pattern (17 bp):
TATATTTTTCTTTGCCT
Found at i:21484494 original size:34 final size:35
Alignment explanation
Indices: 21484450--21484518 Score: 99
Period size: 36 Copynumber: 2.0 Consensus size: 35
21484440 TTTTTAATCT
21484450 TTAATTTTTATTT-AAAT-AAAATCTT-AAAATAAA
1 TTAATTTTTATTTAAAATAAAAAT-TTAAAAATAAA
21484483 TTAATCTTTTATTTAAAATAAAAATTTAAAAATAAA
1 TTAAT-TTTTATTTAAAATAAAAATTTAAAAATAAA
21484519 AATGTATTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
33 5 0.16
34 8 0.25
35 6 0.19
36 13 0.41
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (35 bp):
TTAATTTTTATTTAAAATAAAAATTTAAAAATAAA
Found at i:21484511 original size:13 final size:14
Alignment explanation
Indices: 21484493--21484521 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
21484483 TTAATCTTTT
21484493 ATTT-AAAATAAAA
1 ATTTAAAAATAAAA
21484506 ATTTAAAAATAAAA
1 ATTTAAAAATAAAA
21484520 AT
1 AT
21484522 GTATTTAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.27
14 11 0.73
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
ATTTAAAAATAAAA
Found at i:21484557 original size:28 final size:28
Alignment explanation
Indices: 21484510--21484563 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
21484500 ATAAAAATTT
*
21484510 AAAAATAAAAATGTATTTAAATATAATA
1 AAAAATAAAAATGTATTTAAAAATAATA
*
21484538 AAAATATAAAAATTTA-TTAAAAATAA
1 AAAA-ATAAAAATGTATTTAAAAATAA
21484564 AATAATTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 13 0.57
29 10 0.43
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (28 bp):
AAAAATAAAAATGTATTTAAAAATAATA
Found at i:21485709 original size:5 final size:5
Alignment explanation
Indices: 21485699--21485738 Score: 53
Period size: 5 Copynumber: 7.6 Consensus size: 5
21485689 TGCACATGAT
*
21485699 TAAAA TAAAA TAAAA TAAAA TAATAT TATAAA TAAAA TAA
1 TAAAA TAAAA TAAAA TAAAA TAA-AA TA-AAA TAAAA TAA
21485739 TTTTATTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 24 0.77
6 6 0.19
7 1 0.03
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (5 bp):
TAAAA
Found at i:21485733 original size:17 final size:17
Alignment explanation
Indices: 21485699--21485744 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
21485689 TGCACATGAT
*
21485699 TAAAATAA-AATA-AAA
1 TAAAATAATATTATAAA
21485714 TAAAATAATATTATAAA
1 TAAAATAATATTATAAA
*
21485731 TAAAATAATTTTAT
1 TAAAATAATATTAT
21485745 TTTATCTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
15 8 0.30
16 3 0.11
17 16 0.59
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
TAAAATAATATTATAAA
Found at i:21494052 original size:22 final size:22
Alignment explanation
Indices: 21494024--21494076 Score: 81
Period size: 22 Copynumber: 2.4 Consensus size: 22
21494014 ATGAGGAGTG
21494024 AAAGAGCTAAAG-TTGTTGCATA
1 AAAGAGC-AAAGATTGTTGCATA
*
21494046 AAAGAGCAACGATTGTTGCATA
1 AAAGAGCAAAGATTGTTGCATA
21494068 AAAGAGCAA
1 AAAGAGCAA
21494077 GGAACACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 3 0.10
22 26 0.90
ACGTcount: A:0.45, C:0.11, G:0.23, T:0.21
Consensus pattern (22 bp):
AAAGAGCAAAGATTGTTGCATA
Found at i:21501690 original size:15 final size:16
Alignment explanation
Indices: 21501670--21501706 Score: 56
Period size: 18 Copynumber: 2.2 Consensus size: 16
21501660 AAACAAATTA
21501670 ATTTATTTCAAACATC
1 ATTTATTTCAAACATC
21501686 ATTATGATTTCAAACATC
1 ATT-T-ATTTCAAACATC
21501704 ATT
1 ATT
21501707 ATGTGTAGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 3 0.16
17 1 0.05
18 15 0.79
ACGTcount: A:0.38, C:0.16, G:0.03, T:0.43
Consensus pattern (16 bp):
ATTTATTTCAAACATC
Found at i:21501697 original size:18 final size:18
Alignment explanation
Indices: 21501674--21501709 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
21501664 AAATTAATTT
21501674 ATTTCAAACATCATTATG
1 ATTTCAAACATCATTATG
21501692 ATTTCAAACATCATTATG
1 ATTTCAAACATCATTATG
21501710 TGTAGACAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.17, G:0.06, T:0.39
Consensus pattern (18 bp):
ATTTCAAACATCATTATG
Found at i:21501873 original size:22 final size:23
Alignment explanation
Indices: 21501813--21501873 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 23
21501803 TTATTATTTT
*
21501813 TAAATAAAATTAAACCATATACTAAT
1 TAAATAAAA-TAAA--ATATACTAAA
*
21501839 TAATTAAAA-AAAATATA-TAAA
1 TAAATAAAATAAAATATACTAAA
21501860 TAAATAAAATAAAA
1 TAAATAAAATAAAA
21501874 AAATAACTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
21 11 0.35
22 9 0.29
24 3 0.10
26 8 0.26
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (23 bp):
TAAATAAAATAAAATATACTAAA
Found at i:21507668 original size:15 final size:15
Alignment explanation
Indices: 21507629--21507680 Score: 52
Period size: 17 Copynumber: 3.3 Consensus size: 15
21507619 ATTGGCAAAG
21507629 AAAAGTAAAGAAAAAA
1 AAAAG-AAAGAAAAAA
*
21507645 AAGGTAGAAAGAAAAAA
1 AA--AAGAAAGAAAAAA
21507662 AAAAGAAA-AAAATAA
1 AAAAGAAAGAAAA-AA
21507677 AAAA
1 AAAA
21507681 ATGATTGAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
14 4 0.13
15 11 0.35
16 2 0.06
17 12 0.39
18 2 0.06
ACGTcount: A:0.81, C:0.00, G:0.13, T:0.06
Consensus pattern (15 bp):
AAAAGAAAGAAAAAA
Found at i:21511033 original size:14 final size:14
Alignment explanation
Indices: 21511014--21511040 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
21511004 TTAGTTTTGG
21511014 AAAAAAAGAAAAGA
1 AAAAAAAGAAAAGA
21511028 AAAAAAAGAAAAG
1 AAAAAAAGAAAAG
21511041 GAAATTATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (14 bp):
AAAAAAAGAAAAGA
Found at i:21511430 original size:60 final size:60
Alignment explanation
Indices: 21511359--21511516 Score: 183
Period size: 60 Copynumber: 2.6 Consensus size: 60
21511349 TGGTACATAG
* *
21511359 ATTTTAAGCCAACTTAGCTAGCATTCAAATTTTAAACACTGTTTAACTGGCACCAATAAA
1 ATTTTAAGCCAATTTAGCTAGCATTCAAATTTTAAACACAGTTTAACTGGCACCAATAAA
** * * * * * *
21511419 ATTTTAAGCCAATTTAGCTAGCATGAAAAATGTTAAGCCCAGTTTAGCTGGTACCAATAAG
1 ATTTTAAGCCAATTTAGCTAGCAT-TCAAATTTTAAACACAGTTTAACTGGCACCAATAAA
* *
21511480 A-TTTAAGCCTATTTTAGCTAGAATTCAAATTTTAAAC
1 ATTTTAAGCC-AATTTAGCTAGCATTCAAATTTTAAAC
21511517 CCACTAAAAT
Statistics
Matches: 80, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
60 40 0.50
61 40 0.50
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (60 bp):
ATTTTAAGCCAATTTAGCTAGCATTCAAATTTTAAACACAGTTTAACTGGCACCAATAAA
Found at i:21512760 original size:46 final size:46
Alignment explanation
Indices: 21512593--21512843 Score: 330
Period size: 46 Copynumber: 5.5 Consensus size: 46
21512583 GGCCAAAATA
* *
21512593 TTTTAGATTTGTTTTC-AAAGTTGTGGAGCCTCTAATGAGAGGAGT
1 TTTTAGATTTATTTTCAAAAGTTGTGGAGCCTCTAATGAGAGGAGC
* *
21512638 TTTTAGATTTATTTT-TAAAGTTGTGGAGCCTCTAATGA-AAGATGC
1 TTTTAGATTTATTTTCAAAAGTTGTGGAGCCTCTAATGAGAGGA-GC
* *
21512683 TTTTAGATTTA-TTTCAAAAGTTGTGGAGCCTCTTATGAGAGGAGT
1 TTTTAGATTTATTTTCAAAAGTTGTGGAGCCTCTAATGAGAGGAGC
* *
21512728 TTTTAGATTTATTTTCAAAAGTTATGGAGCCTCTAATGAGAGGAGA
1 TTTTAGATTTATTTTCAAAAGTTGTGGAGCCTCTAATGAGAGGAGC
* * * * * *
21512774 TTTTAAATTTATTTTCAAAAGTTATGGAGCCTTTCATAAGATGAGC
1 TTTTAGATTTATTTTCAAAAGTTGTGGAGCCTCTAATGAGAGGAGC
*
21512820 TTTTAAATTTATTTTCAAAAGTTG
1 TTTTAGATTTATTTTCAAAAGTTG
21512844 CCCCTAATAA
Statistics
Matches: 184, Mismatches: 17, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
44 6 0.03
45 81 0.44
46 97 0.53
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.41
Consensus pattern (46 bp):
TTTTAGATTTATTTTCAAAAGTTGTGGAGCCTCTAATGAGAGGAGC
Found at i:21516645 original size:41 final size:42
Alignment explanation
Indices: 21516600--21516688 Score: 128
Period size: 42 Copynumber: 2.1 Consensus size: 42
21516590 TTTTAGCATC
21516600 ACTTAA-TTTTAGAATCACTCT-ATAAAAATACAAATTCATTT
1 ACTTAATTTTTAGAATCACTCTCA-AAAAATACAAATTCATTT
** *
21516641 ACTTAATTTTTAGAATCGTTCTCAAAATATACAAATTCATTT
1 ACTTAATTTTTAGAATCACTCTCAAAAAATACAAATTCATTT
21516683 ACTTAA
1 ACTTAA
21516689 ATCATCCATG
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
41 6 0.14
42 36 0.84
43 1 0.02
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (42 bp):
ACTTAATTTTTAGAATCACTCTCAAAAAATACAAATTCATTT
Found at i:21528371 original size:67 final size:62
Alignment explanation
Indices: 21528267--21528558 Score: 293
Period size: 66 Copynumber: 4.4 Consensus size: 62
21528257 TAATTTAGTA
*
21528267 AGATTTCATGAATTTAATTTTAAAATTTTATTTTTTAAACCCATGAAAAGATTCCAATAGTTTGG
1 AGATTT-ATGAATTTAATTTTAAAAATTTATTTTTTAAACCCAT-AAAA-A-TCCAATAGTTTGG
21528332 T
62 T
* * *
21528333 GGATTTATGAACTTAATTTTAAAAAAATTTATTTTTTAAACCCATAAAATCATCCAATAATTTGG
1 AGATTTATGAATTTAATTTT--AAAAATTTATTTTTTAAACCCATAAAA--ATCCAATAGTTTGG
21528398 T
62 T
21528399 AGACTTTATGAATTTAATTTTCAAAAATTTATTTTTTTAAACCCAT-AAAATCCTTAATAGTTTG
1 AGA-TTTATGAATTTAATTTT-AAAAATTTA-TTTTTTAAACCCATAAAAATCC--AATAGTTTG
21528463 GTT
61 G-T
* * * * **
21528466 TGATTTATGAATTTAATTTTTTAAAAATTTA-TTTTTAAACCCATAAAATTGTCCGATAGTATAT
1 AGATTTATGAATTTAA--TTTTAAAAATTTATTTTTTAAACCCATAAAA--ATCCAATAGTTTGG
21528530 T
62 T
21528531 AAGATTTCATGAATTT-ATTTTAAAAATT
1 -AGATTT-ATGAATTTAATTTTAAAAATT
21528559 ATCTTTAAAA
Statistics
Matches: 195, Mismatches: 16, Indels: 32
0.80 0.07 0.13
Matches are distributed among these distances:
64 15 0.08
65 27 0.14
66 73 0.37
67 73 0.37
68 7 0.04
ACGTcount: A:0.38, C:0.09, G:0.08, T:0.45
Consensus pattern (62 bp):
AGATTTATGAATTTAATTTTAAAAATTTATTTTTTAAACCCATAAAAATCCAATAGTTTGGT
Found at i:21528397 original size:66 final size:64
Alignment explanation
Indices: 21528254--21528558 Score: 303
Period size: 67 Copynumber: 4.6 Consensus size: 64
21528244 GCAAATTTTT
* * *
21528254 CAATAATTTAGTAAGATTTCATGAATTTAATTTTAAAATTTTATTTTTTAAACCCATGAAAA-GA
1 CAATAATTTGGT-AGATTT-ATGAATTTAATTTTAAAAATTTATTTTTTAAACCCAT-AAAATCA
21528318 TTC
63 -TC
* * *
21528321 CAATAGTTTGGTGGATTTATGAACTTAATTTTAAAAAAATTTATTTTTTAAACCCATAAAATCAT
1 CAATAATTTGGTAGATTTATGAATTTAATTTT--AAAAATTTATTTTTTAAACCCATAAAATCAT
21528386 C
64 C
*
21528387 CAATAATTTGGTAGACTTTATGAATTTAATTTTCAAAAATTTATTTTTTTAAACCCATAAAATCC
1 CAATAATTTGGTAGA-TTTATGAATTTAATTTT-AAAAATTTA-TTTTTTAAACCCATAAAATCA
21528452 T-
63 TC
* * * **
21528453 TAATAGTTTGGTTTGATTTATGAATTTAATTTTTTAAAAATTTA-TTTTTAAACCCATAAAATTG
1 CAATAATTTGG-TAGATTTATGAATTTAA--TTTTAAAAATTTATTTTTTAAACCCATAAAATCA
21528517 TC
63 TC
* * * **
21528519 CGATAGTATATTAAGATTTCATGAATTT-ATTTTAAAAATT
1 CAATAATTTGGT-AGATTT-ATGAATTTAATTTTAAAAATT
21528559 ATCTTTAAAA
Statistics
Matches: 205, Mismatches: 22, Indels: 25
0.81 0.09 0.10
Matches are distributed among these distances:
64 11 0.05
65 33 0.16
66 67 0.33
67 90 0.44
68 4 0.02
ACGTcount: A:0.38, C:0.09, G:0.08, T:0.45
Consensus pattern (64 bp):
CAATAATTTGGTAGATTTATGAATTTAATTTTAAAAATTTATTTTTTAAACCCATAAAATCATC
Found at i:21528483 original size:133 final size:131
Alignment explanation
Indices: 21528254--21528558 Score: 388
Period size: 132 Copynumber: 2.3 Consensus size: 131
21528244 GCAAATTTTT
*
21528254 CAATAATTTAGTAAGATTTCATGAATTTAATTTTAAAATTTTATTTTTTAAACCCATGAAAAGAT
1 CAATAATTTAGTAAGATTTCATGAATTTAATTTTAAAAATTTATTTTTTAAACCCAT-AAAAGAT
21528319 TCCAATAGTTTGGTGGATTTATGAACTTAATTTTAAAAAAATTTATTTTTTAAACCCATAAAATC
65 TCCAATAGTTTGGTGGATTTATGAACTTAATTTTAAAAAAATTTA-TTTTTAAACCCATAAAATC
21528384 ATC
129 ATC
*
21528387 CAATAATTTGGT-AGACTTT-ATGAATTTAATTTTCAAAAATTTATTTTTTTAAACCCAT-AAA-
1 CAATAATTTAGTAAGA-TTTCATGAATTTAATTTT-AAAAATTTA-TTTTTTAAACCCATAAAAG
* * **
21528448 A-TCCTTAATAGTTTGGTTTGATTTATGAATTTAATTTTTTAAAAATTTATTTTTAAACCCATAA
63 ATTCC--AATAGTTTGG-TGGATTTATGAACTTAATTTTAAAAAAATTTATTTTTAAACCCATAA
**
21528512 AATTGTC
125 AATCATC
* * * *
21528519 CGATAGTATATTAAGATTTCATGAATTT-ATTTTAAAAATT
1 CAATAATTTAGTAAGATTTCATGAATTTAATTTTAAAAATT
21528559 ATCTTTAAAA
Statistics
Matches: 151, Mismatches: 13, Indels: 18
0.83 0.07 0.10
Matches are distributed among these distances:
130 3 0.02
131 8 0.05
132 65 0.43
133 61 0.40
134 14 0.09
ACGTcount: A:0.38, C:0.09, G:0.08, T:0.45
Consensus pattern (131 bp):
CAATAATTTAGTAAGATTTCATGAATTTAATTTTAAAAATTTATTTTTTAAACCCATAAAAGATT
CCAATAGTTTGGTGGATTTATGAACTTAATTTTAAAAAAATTTATTTTTAAACCCATAAAATCAT
C
Found at i:21529966 original size:33 final size:33
Alignment explanation
Indices: 21529913--21529989 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 33
21529903 ATAATTTGAA
21529913 AAAATTCAAAGATTTGCAATTACAAGAGATGCT
1 AAAATTCAAAGATTTGCAATTACAAGAGATGCT
* ** **
21529946 AAAAGTCAAAGATTAT-CAATTTGAAGATTTGCT
1 AAAATTCAAAGATT-TGCAATTACAAGAGATGCT
21529979 AAAATTCAAAG
1 AAAATTCAAAG
21529990 GTTCATAATT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
33 36 0.97
34 1 0.03
ACGTcount: A:0.47, C:0.10, G:0.14, T:0.29
Consensus pattern (33 bp):
AAAATTCAAAGATTTGCAATTACAAGAGATGCT
Found at i:21530068 original size:23 final size:22
Alignment explanation
Indices: 21530016--21530068 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
21530006 TAATCCAAGT
*
21530016 ATTCACAATTTGAACTTCAAAC
1 ATTCACAATTTGAACTTCAAAA
* * *
21530038 ATTCACAATTTTAATTTTTAAAA
1 ATTCACAATTTGAA-CTTCAAAA
21530061 ATTCACAA
1 ATTCACAA
21530069 ATAAAATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 13 0.50
23 13 0.50
ACGTcount: A:0.43, C:0.17, G:0.02, T:0.38
Consensus pattern (22 bp):
ATTCACAATTTGAACTTCAAAA
Found at i:21530083 original size:21 final size:21
Alignment explanation
Indices: 21530057--21530116 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
21530047 TTTAATTTTT
*
21530057 AAAAATTCACAAATAAAATTA
1 AAAAATTTACAAATAAAATTA
* *
21530078 AAAAATTTATAAATAAAATTC
1 AAAAATTTACAAATAAAATTA
* *
21530099 AAAGATTTACAATTAAAA
1 AAAAATTTACAAATAAAA
21530117 ATTTGCATAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.63, C:0.07, G:0.02, T:0.28
Consensus pattern (21 bp):
AAAAATTTACAAATAAAATTA
Found at i:21530115 original size:56 final size:54
Alignment explanation
Indices: 21530055--21530164 Score: 130
Period size: 56 Copynumber: 2.0 Consensus size: 54
21530045 ATTTTAATTT
* *
21530055 TTAAAAATTCACAAATAAAATTAAAAAATTTATAAATAAAATTCAAAGATTTACAA
1 TTAAAAATTCACAAATAAAAATAAAAAATTTATAAA-AAAA-TCAAAGATTCACAA
** * * * *
21530111 TTAAAAATTTGCATATAAAAATAAAAGATTTGTAAAGAAATCAAAGATTCACAA
1 TTAAAAATTCACAAATAAAAATAAAAAATTTATAAAAAAATCAAAGATTCACAA
21530165 AAGTTCAAAA
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
54 13 0.28
55 3 0.07
56 30 0.65
ACGTcount: A:0.58, C:0.07, G:0.05, T:0.29
Consensus pattern (54 bp):
TTAAAAATTCACAAATAAAAATAAAAAATTTATAAAAAAATCAAAGATTCACAA
Found at i:21530222 original size:18 final size:18
Alignment explanation
Indices: 21530134--21530277 Score: 69
Period size: 18 Copynumber: 7.8 Consensus size: 18
21530124 TATAAAAATA
* *
21530134 AAAGATTTGTAAAGAAATC
1 AAAGATTTGCAAA-AATTC
** *
21530153 AAAGATTCACAAAAGTTC
1 AAAGATTTGCAAAAATTC
*
21530171 AAA-ATTTTGCAAAATAGTTT
1 AAAGA-TTTGCAAAA-A-TTC
* *
21530191 AAAGATTAGTAAAAATTC
1 AAAGATTTGCAAAAATTC
*
21530209 AAAGATTTGC-AAAAGT-
1 AAAGATTTGCAAAAATTC
* * * *
21530225 GAGGATTTACAAAAGTTC
1 AAAGATTTGCAAAAATTC
* *
21530243 AAAGATTTGTAAAAGTGTTC
1 AAAGATTTGCAAAA--ATTC
*
21530263 AAAGATTAGCAAAAA
1 AAAGATTTGCAAAAA
21530278 ATTGAAAATT
Statistics
Matches: 90, Mismatches: 27, Indels: 17
0.67 0.20 0.13
Matches are distributed among these distances:
16 7 0.08
17 10 0.11
18 33 0.37
19 11 0.12
20 28 0.31
21 1 0.01
ACGTcount: A:0.49, C:0.08, G:0.15, T:0.28
Consensus pattern (18 bp):
AAAGATTTGCAAAAATTC
Found at i:21530276 original size:20 final size:20
Alignment explanation
Indices: 21530239--21530276 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
21530229 ATTTACAAAA
* *
21530239 GTTCAAAGATTTGTAAAAGT
1 GTTCAAAGATTAGCAAAAGT
21530259 GTTCAAAGATTAGCAAAA
1 GTTCAAAGATTAGCAAAA
21530277 AATTGAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.08, G:0.18, T:0.29
Consensus pattern (20 bp):
GTTCAAAGATTAGCAAAAGT
Found at i:21530294 original size:38 final size:37
Alignment explanation
Indices: 21530252--21530350 Score: 96
Period size: 36 Copynumber: 2.6 Consensus size: 37
21530242 CAAAGATTTG
*
21530252 TAAAAGTGTTCAAAGATTAGCAAAAAATTGAA-AATTCA
1 TAAAAGTGTT-AAAGATT-GCAAAAAATTCAACAATTCA
* *
21530290 TAAAAGT-TTAAAAATT-CACAAAAATTCAACAATTCG
1 TAAAAGTGTTAAAGATTGCA-AAAAATTCAACAATTCA
*
21530326 TAAAAATGTTTAAAGATTTGCAAAA
1 TAAAAGTG-TTAAAGA-TTGCAAAA
21530351 GTGTTGACAA
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
34 2 0.04
35 9 0.18
36 17 0.34
37 2 0.04
38 13 0.26
39 5 0.10
40 2 0.04
ACGTcount: A:0.53, C:0.09, G:0.10, T:0.28
Consensus pattern (37 bp):
TAAAAGTGTTAAAGATTGCAAAAAATTCAACAATTCA
Found at i:21530295 original size:72 final size:72
Alignment explanation
Indices: 21530156--21530296 Score: 162
Period size: 72 Copynumber: 2.0 Consensus size: 72
21530146 AGAAATCAAA
* * **
21530156 GATTCACAAAAGTTCAAAATTTTGCAAAATAGTTTAAAGATTAGTAAAAATTCAAAGATTTGCAA
1 GATTCACAAAAGTTCAAAATTTTGCAAAATAGTTCAAAGATTAGAAAAAATTCAAAGATTCACAA
21530221 AAGTGAG
66 AAGTGAG
* * *
21530228 GATTTACAAAAGTTCAAAGA-TTTGTAAAAGT-GTTCAAAGATTAGCAAAAAATTGAAA-ATTCA
1 GATTCACAAAAGTTCAAA-ATTTTGCAAAA-TAGTTCAAAGATTAG-AAAAAATTCAAAGATTCA
*
21530290 TAAAAGT
63 CAAAAGT
21530297 TTAAAAATTC
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
72 46 0.79
73 12 0.21
ACGTcount: A:0.48, C:0.08, G:0.15, T:0.29
Consensus pattern (72 bp):
GATTCACAAAAGTTCAAAATTTTGCAAAATAGTTCAAAGATTAGAAAAAATTCAAAGATTCACAA
AAGTGAG
Found at i:21530351 original size:94 final size:93
Alignment explanation
Indices: 21530235--21530412 Score: 216
Period size: 94 Copynumber: 1.9 Consensus size: 93
21530225 GAGGATTTAC
* * *
21530235 AAAAGTTCAAAGATTTGTAAAAGTGTTCA-AAGATT-AGCAAAAAATTGAAAATTCATAAAAGTT
1 AAAAGTTCAAAGATTTGCAAAAGTGTTCACAA-ATTCA-CAAAAAATCGAAAATTCACAAAAGTT
*
21530298 TAAAAATTCACAAAAATTCAACAATTCGTA
64 CAAAAATTCACAAAAATTCAACAATTCGTA
* * * **
21530328 AAAATGTTTAAAGATTTGCAAAAGTGTTGACAAATTCACAAAAGATCGAAAATTTGCAAAAGTTC
1 AAAA-GTTCAAAGATTTGCAAAAGTGTTCACAAATTCACAAAAAATCGAAAATTCACAAAAGTTC
* *
21530393 AAATATTCACAAAAGTTCAA
65 AAAAATTCACAAAAATTCAA
21530413 AAAGTAGCAA
Statistics
Matches: 71, Mismatches: 11, Indels: 5
0.82 0.13 0.06
Matches are distributed among these distances:
93 4 0.06
94 64 0.90
95 3 0.04
ACGTcount: A:0.50, C:0.11, G:0.12, T:0.28
Consensus pattern (93 bp):
AAAAGTTCAAAGATTTGCAAAAGTGTTCACAAATTCACAAAAAATCGAAAATTCACAAAAGTTCA
AAAATTCACAAAAATTCAACAATTCGTA
Found at i:21530405 original size:18 final size:18
Alignment explanation
Indices: 21530361--21530586 Score: 87
Period size: 18 Copynumber: 12.7 Consensus size: 18
21530351 GTGTTGACAA
*
21530361 ATTCACAAAAGATCGAAA-
1 ATTCACAAAAGTTC-AAAT
**
21530379 ATTTGCAAAAGTTCAAAT
1 ATTCACAAAAGTTCAAAT
*
21530397 ATTCACAAAAGTTCAAAA
1 ATTCACAAAAGTTCAAAT
* * *
21530415 AGT-AGCAAATG-TC-AAG
1 ATTCA-CAAAAGTTCAAAT
* *
21530431 ATTCAAAAAAATTC-AAT
1 ATTCACAAAAGTTCAAAT
*
21530448 GATTCACAAAAGTTCAAAG
1 -ATTCACAAAAGTTCAAAT
* *
21530467 ATTCATAAGAGATTCAAA-
1 ATTCACAAAAG-TTCAAAT
*** *
21530485 ATTTGGAAAAGTTCAAAG
1 ATTCACAAAAGTTCAAAT
* * *
21530503 A-TCTATAAAAG-T-GAAG
1 ATTC-ACAAAAGTTCAAAT
*
21530519 ATTCACAAAATTTCAAAT
1 ATTCACAAAAGTTCAAAT
*
21530537 AGTCACAAAAATGTTC-AAT
1 ATTCAC-AAAA-GTTCAAAT
*
21530556 GATTCACAAAATTTC-AAT
1 -ATTCACAAAAGTTCAAAT
*
21530574 GATTCTCAAAAGT
1 -ATTCACAAAAGT
21530587 GAAGATTTGC
Statistics
Matches: 156, Mismatches: 37, Indels: 30
0.70 0.17 0.13
Matches are distributed among these distances:
16 16 0.10
17 22 0.14
18 91 0.58
19 19 0.12
20 8 0.05
ACGTcount: A:0.49, C:0.13, G:0.12, T:0.27
Consensus pattern (18 bp):
ATTCACAAAAGTTCAAAT
Found at i:21530469 original size:36 final size:36
Alignment explanation
Indices: 21530428--21530584 Score: 104
Period size: 36 Copynumber: 4.4 Consensus size: 36
21530418 AGCAAATGTC
21530428 AAGATTCA-AAAAAATTCAATGATTCACAAAAGTTCA
1 AAGATTCACAAAAAATTCAA-GATTCACAAAAGTTCA
* * * * ***
21530464 AAGATTCATAAGAGATTCAAAATTTGGAAAAGTTCA
1 AAGATTCACAAAAAATTCAAGATTCACAAAAGTTCA
* * * * *
21530500 AAGA-TC-TATAAAAGTGAAGATTCACAAAATTTCA
1 AAGATTCACAAAAAATTCAAGATTCACAAAAGTTCA
* * * *
21530534 AATAGTCACAAAAATGTTCAATGATTCACAAAATTTCA
1 AAGATTCACAAAAA-ATTCAA-GATTCACAAAAGTTCA
* *
21530572 ATGATTCTCAAAA
1 AAGATTCACAAAA
21530585 GTGAAGATTT
Statistics
Matches: 90, Mismatches: 26, Indels: 8
0.73 0.21 0.06
Matches are distributed among these distances:
34 21 0.23
35 4 0.04
36 28 0.31
37 12 0.13
38 25 0.28
ACGTcount: A:0.49, C:0.13, G:0.11, T:0.27
Consensus pattern (36 bp):
AAGATTCACAAAAAATTCAAGATTCACAAAAGTTCA
Found at i:21530684 original size:20 final size:20
Alignment explanation
Indices: 21530659--21530707 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
21530649 TAAAAGTTCA
21530659 CAAATAAAT-TCAAAGATTTG
1 CAAATAAATCTCAAAG-TTTG
* *
21530679 CAAATAGAATCTCGAAGTTTT
1 CAAATA-AATCTCAAAGTTTG
21530700 CAAATAAA
1 CAAATAAA
21530708 ATTTAAAGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 8 0.32
21 12 0.48
22 5 0.20
ACGTcount: A:0.49, C:0.12, G:0.10, T:0.29
Consensus pattern (20 bp):
CAAATAAATCTCAAAGTTTG
Found at i:21530724 original size:21 final size:21
Alignment explanation
Indices: 21530700--21530813 Score: 117
Period size: 21 Copynumber: 5.5 Consensus size: 21
21530690 TCGAAGTTTT
*
21530700 CAAATAAAATTTAAAGGTTCA
1 CAAATAAAATTTAAAGATTCA
** *
21530721 CAAATAAAATACAAAGTTTCA
1 CAAATAAAATTTAAAGATTCA
* *
21530742 AAAATAAAATTTAATGATTCA
1 CAAATAAAATTTAAAGATTCA
*
21530763 CAAATAAAA--TAAGAAATTCA
1 CAAATAAAATTTAA-AGATTCA
*
21530783 CAAA-AGAAATTTTAAGATTCA
1 CAAATA-AAATTTAAAGATTCA
21530804 CAAATAAAAT
1 CAAATAAAAT
21530814 CCAAGATTTG
Statistics
Matches: 75, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
19 4 0.05
20 12 0.16
21 56 0.75
22 3 0.04
ACGTcount: A:0.58, C:0.10, G:0.06, T:0.26
Consensus pattern (21 bp):
CAAATAAAATTTAAAGATTCA
Found at i:21530738 original size:41 final size:41
Alignment explanation
Indices: 21530693--21530846 Score: 145
Period size: 41 Copynumber: 3.7 Consensus size: 41
21530683 TAGAATCTCG
*
21530693 AAGTTTTCAAATA-AAATTTAAAGGTTCACAAATAAAATACA
1 AAGTTTTCAAA-AGAAATTTAAAGATTCACAAATAAAATACA
* *
21530734 AAG-TTTCAAAAATAAAATTTAATGATTCACAAATAAAATA-A
1 AAGTTTTC-AAAA-GAAATTTAAAGATTCACAAATAAAATACA
* ** * *
21530775 GAAATTCACAAAAGAAATTTTAAGATTCACAAATAAAAT-CC
1 -AAGTTTTCAAAAGAAATTTAAAGATTCACAAATAAAATACA
* *
21530816 AAGATTTGCAAAAGAAATTTAAAAATTCACA
1 AAG-TTTTCAAAAGAAATTTAAAGATTCACA
21530847 TCTAAAATTA
Statistics
Matches: 92, Mismatches: 14, Indels: 14
0.77 0.12 0.12
Matches are distributed among these distances:
40 7 0.08
41 53 0.58
42 30 0.33
43 2 0.02
ACGTcount: A:0.55, C:0.10, G:0.07, T:0.27
Consensus pattern (41 bp):
AAGTTTTCAAAAGAAATTTAAAGATTCACAAATAAAATACA
Found at i:21531594 original size:20 final size:20
Alignment explanation
Indices: 21531555--21531594 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
21531545 CTCAAGCTTA
* *
21531555 TTTCATTTTTCTCATTTCAT
1 TTTCATTTTACTCATATCAT
*
21531575 TTTCATTTTACTCCTATCAT
1 TTTCATTTTACTCATATCAT
21531595 CCTATATTTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.17, C:0.23, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTCATTTTACTCATATCAT
Found at i:21533518 original size:19 final size:19
Alignment explanation
Indices: 21533472--21533518 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
21533462 AATTCTTACC
21533472 TTGACTTGGTTTTTCTACA
1 TTGACTTGGTTTTTCTACA
* * *
21533491 TTAAGTTGG-TTTTCTTATA
1 TTGACTTGGTTTTTC-TACA
21533510 TTGACTTGG
1 TTGACTTGG
21533519 AAATCCCACC
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
18 5 0.23
19 17 0.77
ACGTcount: A:0.17, C:0.11, G:0.19, T:0.53
Consensus pattern (19 bp):
TTGACTTGGTTTTTCTACA
Found at i:21540957 original size:11 final size:11
Alignment explanation
Indices: 21540930--21540969 Score: 55
Period size: 10 Copynumber: 3.5 Consensus size: 11
21540920 GGGGAAAGAG
21540930 AAATTTTGTTCCA
1 AAATTTT-TT-CA
21540943 AAATTTTTTCA
1 AAATTTTTTCA
21540954 AAA-TTTTTCA
1 AAATTTTTTCA
21540964 AAATTT
1 AAATTT
21540970 ATATTTTGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 10 0.38
11 7 0.27
12 2 0.08
13 7 0.27
ACGTcount: A:0.38, C:0.10, G:0.03, T:0.50
Consensus pattern (11 bp):
AAATTTTTTCA
Found at i:21542921 original size:19 final size:19
Alignment explanation
Indices: 21542899--21542935 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
21542889 TCCTATCCAA
*
21542899 ATTAGGAATTCCTACTTTT
1 ATTAAGAATTCCTACTTTT
*
21542918 ATTAAGAATTCTTACTTT
1 ATTAAGAATTCCTACTTT
21542936 GAGTTGGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.14, G:0.08, T:0.49
Consensus pattern (19 bp):
ATTAAGAATTCCTACTTTT
Found at i:21542981 original size:159 final size:157
Alignment explanation
Indices: 21542623--21542935 Score: 403
Period size: 159 Copynumber: 2.0 Consensus size: 157
21542613 AAATGACATG
* * ** *
21542623 GTAGCATGTCTCTTCTCATTGGCTT-AAGGAGTTGACTTGGAGGCTTATGTGGCATGATGACTTG
1 GTAGCATGTCTCTACTCATT-ACTTGAAACACTTGACTTGGAGGCTTATGTGGCATGATGACTTG
* * * *
21542687 GCAATTCTATTCAAATTAGAAAAGTCCAAACAGCCTTTAGTTTTTTATTCAAATTGGGAATTCTA
65 GCAATTCTATCCAAATTAGAAAAGTCCAAACAGCCTTTAGTTTTCTATCCAAATTAGGAATTCTA
*
21542752 CTTTCATTAGGAATTCCTACTTTTGACAC
130 CTTTCATTAAGAATTCCTACTTTTGA-AC
* * * * *
21542781 GGTAGCATGTCTCTTCTCATTAGTTTAAAGAGTTGACTTGGAGGCTTATGTGGCATGATGACTTG
1 -GTAGCATGTCTCTACTCATTACTTGAAACACTTGACTTGGAGGCTTATGTGGCATGATGACTTG
* *
21542846 GCAATTCTATCCAAATTGGAAAAGTCCAAATAGCCTTTAGTTTTCCTATCCAAATTAGGAATTCC
65 GCAATTCTATCCAAATTAGAAAAGTCCAAACAGCCTTTAGTTTT-CTATCCAAATTAGGAATT-C
* *
21542911 TACTTTTATTAAGAATTCTTACTTT
128 TACTTTCATTAAGAATTCCTACTTT
21542936 GAGTTGGTTT
Statistics
Matches: 139, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
158 2 0.01
159 99 0.71
160 15 0.11
161 23 0.17
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (157 bp):
GTAGCATGTCTCTACTCATTACTTGAAACACTTGACTTGGAGGCTTATGTGGCATGATGACTTGG
CAATTCTATCCAAATTAGAAAAGTCCAAACAGCCTTTAGTTTTCTATCCAAATTAGGAATTCTAC
TTTCATTAAGAATTCCTACTTTTGAAC
Found at i:21553962 original size:22 final size:22
Alignment explanation
Indices: 21553937--21553981 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
21553927 AATGATATAT
21553937 AATTCCCTTAATTTCCTTCCTA
1 AATTCCCTTAATTTCCTTCCTA
*
21553959 AATTCCCTTAATTTTCTTCCTA
1 AATTCCCTTAATTTCCTTCCTA
21553981 A
1 A
21553982 GGTTACTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.24, C:0.29, G:0.00, T:0.47
Consensus pattern (22 bp):
AATTCCCTTAATTTCCTTCCTA
Found at i:21560852 original size:29 final size:29
Alignment explanation
Indices: 21560814--21560874 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
21560804 CAATCGTTCT
*
21560814 TAAATATGAAACTGAAATGATGTTTCTAG
1 TAAATATGAAACTAAAATGATGTTTCTAG
21560843 TAAATATGAAACTAAAATGATGTTTCTAG
1 TAAATATGAAACTAAAATGATGTTTCTAG
21560872 TAA
1 TAA
21560875 TGACTTGAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.44, C:0.07, G:0.15, T:0.34
Consensus pattern (29 bp):
TAAATATGAAACTAAAATGATGTTTCTAG
Found at i:21563838 original size:11 final size:11
Alignment explanation
Indices: 21563822--21563852 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
21563812 TTGTGATGGC
21563822 TTCAAGAACAA
1 TTCAAGAACAA
21563833 TTCAAGAACAA
1 TTCAAGAACAA
21563844 TTCAAGAAC
1 TTCAAGAAC
21563853 CTTAAAGCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.52, C:0.19, G:0.10, T:0.19
Consensus pattern (11 bp):
TTCAAGAACAA
Found at i:21568807 original size:67 final size:67
Alignment explanation
Indices: 21568719--21568846 Score: 204
Period size: 67 Copynumber: 1.9 Consensus size: 67
21568709 ATGAAAATTT
*
21568719 TTCAATAATTTAGTAGAATTTATGAATTTAATTTGCAAAAAATTTATTTTTTAAACCCATAGAAT
1 TTCAATAATTTAGTAGAATTTATGAATTTAATTTGCAAAAAATTTATTTTTCAAACCCATAGAAT
21568784 CC
66 CC
* * *
21568786 TTCAATAGTTTGGTATG-ATTTATGAATTTAATTTTCAAAAAATTTATTTTTCAAACCCATA
1 TTCAATAATTTAGTA-GAATTTATGAATTTAATTTGCAAAAAATTTATTTTTCAAACCCATA
21568847 AAATGATCAA
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
67 55 0.98
68 1 0.02
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.44
Consensus pattern (67 bp):
TTCAATAATTTAGTAGAATTTATGAATTTAATTTGCAAAAAATTTATTTTTCAAACCCATAGAAT
CC
Found at i:21568831 original size:16 final size:16
Alignment explanation
Indices: 21568810--21568840 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
21568800 ATGATTTATG
21568810 AATTTAATTTTCAAAA
1 AATTTAATTTTCAAAA
*
21568826 AATTTATTTTTCAAA
1 AATTTAATTTTCAAA
21568841 CCCATAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (16 bp):
AATTTAATTTTCAAAA
Found at i:21568860 original size:67 final size:67
Alignment explanation
Indices: 21568736--21568867 Score: 194
Period size: 67 Copynumber: 2.0 Consensus size: 67
21568726 ATTTAGTAGA
* * * *
21568736 ATTTATGAATTTAATTTGCAAAAAATTTATTTTTTAAACCCATAGAATCCTTCAATAGTTTGGTA
1 ATTTATGAATTTAATTTGCAAAAAATTTATTTTTCAAACCCATAAAATCCATCAATAGATTGGTA
21568801 TG
66 TG
* *
21568803 ATTTATGAATTTAATTTTCAAAAAATTTATTTTTCAAACCCATAAAAT-GATCAAATAGATTGGT
1 ATTTATGAATTTAATTTGCAAAAAATTTATTTTTCAAACCCATAAAATCCATC-AATAGATTGGT
21568867 A
65 A
21568868 AAATTTCAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
66 2 0.03
67 56 0.97
ACGTcount: A:0.39, C:0.10, G:0.09, T:0.42
Consensus pattern (67 bp):
ATTTATGAATTTAATTTGCAAAAAATTTATTTTTCAAACCCATAAAATCCATCAATAGATTGGTA
TG
Found at i:21568905 original size:13 final size:13
Alignment explanation
Indices: 21568870--21568894 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21568860 GATTGGTAAA
21568870 ATTTCAAAAATTT
1 ATTTCAAAAATTT
21568883 ATTTCAAAAATT
1 ATTTCAAAAATT
21568895 ACTTTTAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
ATTTCAAAAATTT
Found at i:21568984 original size:26 final size:25
Alignment explanation
Indices: 21568924--21569009 Score: 129
Period size: 25 Copynumber: 3.4 Consensus size: 25
21568914 TTTTATTTTA
*
21568924 AAAC-AATAAATAAATTTTTAATCC
1 AAACAAATAAATAAATTTCTAATCC
21568948 AAACAAATAAATAAATTTCTAATCC
1 AAACAAATAAATAAATTTCTAATCC
* *
21568973 AAAACAAATAAATAAATTCCTCATCC
1 -AAACAAATAAATAAATTTCTAATCC
21568999 AAACAAATAAA
1 AAACAAATAAA
21569010 ATGACAAATT
Statistics
Matches: 57, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
24 4 0.07
25 30 0.53
26 23 0.40
ACGTcount: A:0.58, C:0.16, G:0.00, T:0.26
Consensus pattern (25 bp):
AAACAAATAAATAAATTTCTAATCC
Found at i:21573336 original size:15 final size:15
Alignment explanation
Indices: 21573316--21573352 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
21573306 GACCCCAAAA
21573316 GAATACTTCAATATG
1 GAATACTTCAATATG
21573331 GAATACTTCAATATG
1 GAATACTTCAATATG
*
21573346 AAATACT
1 GAATACT
21573353 CTTAAGCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (15 bp):
GAATACTTCAATATG
Found at i:21576149 original size:20 final size:20
Alignment explanation
Indices: 21576124--21576162 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
21576114 TAACCTTTGA
*
21576124 AAAATAATAGGCATTATATC
1 AAAATAATAGGCATGATATC
21576144 AAAATAATAGGCATGATAT
1 AAAATAATAGGCATGATAT
21576163 TAGATGTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.51, C:0.08, G:0.13, T:0.28
Consensus pattern (20 bp):
AAAATAATAGGCATGATATC
Found at i:21579148 original size:190 final size:189
Alignment explanation
Indices: 21578817--21579212 Score: 472
Period size: 190 Copynumber: 2.1 Consensus size: 189
21578807 AATAAGGAAT
* * *
21578817 TAATTTTTTAAA-ATGATCAATTAAGGCATGTTTGTACAGAAACACTTTAATTGATATGTTTTAA
1 TAATTTTTAAAACAT-ATCAATTAAAGCATGTTTGTACACAAACACTTTAATTGATATGTTTTAA
** * * ** ***
21578881 AAATTATAATTTAGATCAATTAAGGCATTTCTGTATACAAATGCCTTAATTGATATGTTTTAAAA
65 AAATTATAAAATAGATCAATTAAGGCATTTCTGTACAAAAACACCTTAATTGATATAAATTAAAA
* * ** * ** *
21578946 ATTATTAAATAGATTAATTAAAGCATTTTTTTTACACAAATGCCTTAATTTATCTAAATTA
130 ATTATAAAATAGATCAATTAAAGCA-TTCATGTACACAAACACCTTAATTGATCTAAATTA
* *
21579007 TAATTTTTAAAACATATCAATTAAAGCATTTTTGTACACAAAC-GTCTTAATTGATATGTTTTAA
1 TAATTTTTAAAACATATCAATTAAAGCATGTTTGTACACAAACACT-TTAATTGATATGTTTTAA
* * * * *
21579071 AATTTATAAAATAGATCAATTAAGGCATTTGTGTACAAAAACATCTTAATTGATCTAAATTAAAT
65 AAATTATAAAATAGATCAATTAAGGCATTTCTGTACAAAAACACCTTAATTGATATAAATTAAAA
* * **
21579136 ATTATAAAATAGATCCATTAAGGCATTCATGTACACAAACACCTTAATTGATCTATTTTA
130 ATTATAAAATAGATCAATTAAAGCATTCATGTACACAAACACCTTAATTGATCTAAATTA
21579196 TAATTTTTAAAACATAT
1 TAATTTTTAAAACATAT
21579213 TAAGGTGTTC
Statistics
Matches: 173, Mismatches: 31, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
189 45 0.26
190 126 0.73
191 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (189 bp):
TAATTTTTAAAACATATCAATTAAAGCATGTTTGTACACAAACACTTTAATTGATATGTTTTAAA
AATTATAAAATAGATCAATTAAGGCATTTCTGTACAAAAACACCTTAATTGATATAAATTAAAAA
TTATAAAATAGATCAATTAAAGCATTCATGTACACAAACACCTTAATTGATCTAAATTA
Found at i:21579172 original size:126 final size:123
Alignment explanation
Indices: 21578825--21579207 Score: 376
Period size: 127 Copynumber: 3.0 Consensus size: 123
21578815 ATTAATTTTT
* * *** *
21578825 TAAAAT-GATCAATTAAGGCATGTTTGTACAGAAACACTTTAATTGATATGTTTTAAAAATTATA
1 TAAAATAGATCAATTAAGGCAT-TTTGTACAAAAACAC-TTAATTGATCTAAATTAAATATTATA
** * * *
21578889 ATTTAGATCAATTAAGGCATTTCTGTATACAAATGCCTTAATTGATATGTTTTAAAAATTA
64 AAATAGATCAATTAAGGCA-TTCTGTACACAAACGCCTTAATTGATATGTTTTAAAATTTA
* * * * * *
21578950 TTAAATAGATTAATTAAAGCATTTTTTTTACACAAATGC-CTTAATTTATCTAAATTATAAT-TT
1 TAAAATAGATCAATTAAGGCA--TTTTGTACA-AAA-ACACTTAATTGATCTAAATTA-AATATT
* * * * * *
21579013 TTAAAACATATCAATTAAAGCATTTTTGTACACAAACGTCTTAATTGATATGTTTTAAAATTTA
61 ATAAAATAGATCAATTAAGGCA-TTCTGTACACAAACGCCTTAATTGATATGTTTTAAAATTTA
21579077 TAAAATAGATCAATTAAGGCATTTGTGTACAAAAACATCTTAATTGATCTAAATTAAATATTATA
1 TAAAATAGATCAATTAAGGCATTT-TGTACAAAAACA-CTTAATTGATCTAAATTAAATATTATA
* * * * * *
21579142 AAATAGATCCATTAAGGCATTCATGTACACAAACACCTTAATTGATCTATTTTATAATTTT
64 AAATAGATCAATTAAGGCATTC-TGTACACAAACGCCTTAATTGATATGTTTTAAAATTTA
21579203 TAAAA
1 TAAAA
21579208 CATATTAAGG
Statistics
Matches: 206, Mismatches: 41, Indels: 21
0.77 0.15 0.08
Matches are distributed among these distances:
124 1 0.00
125 16 0.08
126 90 0.44
127 92 0.45
128 6 0.03
129 1 0.00
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.39
Consensus pattern (123 bp):
TAAAATAGATCAATTAAGGCATTTTGTACAAAAACACTTAATTGATCTAAATTAAATATTATAAA
ATAGATCAATTAAGGCATTCTGTACACAAACGCCTTAATTGATATGTTTTAAAATTTA
Found at i:21579188 original size:63 final size:63
Alignment explanation
Indices: 21578825--21579195 Score: 348
Period size: 63 Copynumber: 5.9 Consensus size: 63
21578815 ATTAATTTTT
* * * *
21578825 TAAAAT-GATCAATTAAGGCATGTTTGTACAGAAACACTTTAATTGATATGTTTTAAAAATTA
1 TAAAATAGATCAATTAAGGCATTTTTGTACACAAACACCTTAATTGATATATTTTAAAAATTA
** * * ** *
21578887 TAATTTAGATCAATTAAGGCATTTCTGTATACAAATGCCTTAATTGATATGTTTTAAAAATTA
1 TAAAATAGATCAATTAAGGCATTTTTGTACACAAACACCTTAATTGATATATTTTAAAAATTA
* * * * ** * * ** * * *
21578950 TTAAATAGATTAATTAAAGCATTTTTTTTACACAAATGCCTTAATTTATCTAAATTATAATTTT
1 TAAAATAGATCAATTAAGGCA-TTTTTGTACACAAACACCTTAATTGATATATTTTAAAAATTA
* * * ** * *
21579014 TAAAACATATCAATTAAAGCATTTTTGTACACAAACGTCTTAATTGATATGTTTTAAAATTTA
1 TAAAATAGATCAATTAAGGCATTTTTGTACACAAACACCTTAATTGATATATTTTAAAAATTA
* * * * ** *
21579077 TAAAATAGATCAATTAAGGCATTTGTGTACAAAAACATCTTAATTGATCTAAATTAAATATTA
1 TAAAATAGATCAATTAAGGCATTTTTGTACACAAACACCTTAATTGATATATTTTAAAAATTA
* ** *
21579140 TAAAATAGATCCATTAAGGCATTCATGTACACAAACACCTTAATTGATCTATTTTA
1 TAAAATAGATCAATTAAGGCATTTTTGTACACAAACACCTTAATTGATATATTTTA
21579196 TAATTTTTAA
Statistics
Matches: 249, Mismatches: 58, Indels: 3
0.80 0.19 0.01
Matches are distributed among these distances:
62 4 0.02
63 197 0.79
64 48 0.19
ACGTcount: A:0.41, C:0.11, G:0.09, T:0.39
Consensus pattern (63 bp):
TAAAATAGATCAATTAAGGCATTTTTGTACACAAACACCTTAATTGATATATTTTAAAAATTA
Found at i:21579640 original size:26 final size:26
Alignment explanation
Indices: 21579611--21579662 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
21579601 TACTCACTCA
* *
21579611 CATTTTTTTAATTTTTTGGATTTTTT
1 CATTTGTTTAATTTTTTGCATTTTTT
* *
21579637 CATTTGTTTATTTTTTTTCATTTTTT
1 CATTTGTTTAATTTTTTGCATTTTTT
21579663 TAAAAAATAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.13, C:0.06, G:0.06, T:0.75
Consensus pattern (26 bp):
CATTTGTTTAATTTTTTGCATTTTTT
Found at i:21581242 original size:14 final size:13
Alignment explanation
Indices: 21581214--21581273 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
21581204 TTTTTGTCCA
*
21581214 TTTTTTATTTTAT
1 TTTTTTATTTAAT
*
21581227 TTTTTTATTTAAA
1 TTTTTTATTTAAT
*
21581240 TTTTTT-TTTCAT
1 TTTTTTATTTAAT
*
21581252 TTCTTTTCATTTTAT
1 TT-TTTT-ATTTAAT
21581267 TTATTTT
1 TT-TTTT
21581274 TAAATTTTAT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
12 6 0.16
13 21 0.55
15 11 0.29
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTTTTATTTAAT
Found at i:21581312 original size:21 final size:22
Alignment explanation
Indices: 21581281--21581322 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
21581271 TTTTAAATTT
21581281 TATTTTGAATAAAAATAATTAA
1 TATTTTGAATAAAAATAATTAA
* *
21581303 TATTTT-AATATAACTAATTA
1 TATTTTGAATAAAAATAATTA
21581323 TTATCAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (22 bp):
TATTTTGAATAAAAATAATTAA
Found at i:21581612 original size:21 final size:21
Alignment explanation
Indices: 21581587--21581641 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
21581577 CATCATTAAT
*
21581587 TTTAATCTCACCGTTACAGTA
1 TTTAATCTCACCATTACAGTA
* * *
21581608 TTTAATTTTATCATTACAGTA
1 TTTAATCTCACCATTACAGTA
**
21581629 ACTAATCTCACCA
1 TTTAATCTCACCA
21581642 CTATTGCTAT
Statistics
Matches: 25, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.33, C:0.22, G:0.05, T:0.40
Consensus pattern (21 bp):
TTTAATCTCACCATTACAGTA
Found at i:21581684 original size:165 final size:165
Alignment explanation
Indices: 21581501--21581827 Score: 476
Period size: 165 Copynumber: 2.0 Consensus size: 165
21581491 TAATATAATA
* * *
21581501 TCTTTAATGATCATTTTCTACTTCT-ACTATTATTTATCTCACCGCCACTGCTGCGATTACATCC
1 TCTTTAATGATCATTTTCT-CTTCTCACTATTATTTATCTCACCACCACTACTACGATTACATCC
* * * ** * * * * *
21581565 AAATACATATTTCATCATTAATTTTAATCTCACCGTTACAGTATTTAATTTTATCATTACAGTAA
65 AAATACATATTTCATCACTAATTATAATATCACCACTACAATACTTAATCTTATAACTACAGTAA
*
21581630 CTAATCTCACCACTATTGCTATTTTTAATCTCACCG
130 CTAATCTCACCACTATTACTATTTTTAATCTCACCG
* * * *
21581666 TCTTTAATGGTCATTTTCTTTTTTCACTATTATTTATCTCATCACCACTACTACGATTACATCCA
1 TCTTTAATGATCATTTTCTCTTCTCACTATTATTTATCTCACCACCACTACTACGATTACATCCA
21581731 AATACATATTTCATCACTAATTATAATATCACCACTACAATACTTAATCTTATAACTACAGTAAC
66 AATACATATTTCATCACTAATTATAATATCACCACTACAATACTTAATCTTATAACTACAGTAAC
21581796 TAATCTCACCACTATTACTATTTTTAATCTCA
131 TAATCTCACCACTATTACTATTTTTAATCTCA
21581828 TTGAAATTAA
Statistics
Matches: 143, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
164 3 0.02
165 140 0.98
ACGTcount: A:0.31, C:0.24, G:0.04, T:0.41
Consensus pattern (165 bp):
TCTTTAATGATCATTTTCTCTTCTCACTATTATTTATCTCACCACCACTACTACGATTACATCCA
AATACATATTTCATCACTAATTATAATATCACCACTACAATACTTAATCTTATAACTACAGTAAC
TAATCTCACCACTATTACTATTTTTAATCTCACCG
Found at i:21581809 original size:21 final size:21
Alignment explanation
Indices: 21581754--21581809 Score: 51
Period size: 21 Copynumber: 2.7 Consensus size: 21
21581744 TCACTAATTA
*
21581754 TAATATCACCACTACAATACT
1 TAATCTCACCACTACAATACT
* ** *
21581775 TAATCTTATAACTACAGTAAC-
1 TAATCTCACCACTACAAT-ACT
21581796 TAATCTCACCACTA
1 TAATCTCACCACTA
21581810 TTACTATTTT
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
21 24 0.92
22 2 0.08
ACGTcount: A:0.41, C:0.27, G:0.02, T:0.30
Consensus pattern (21 bp):
TAATCTCACCACTACAATACT
Found at i:21582464 original size:21 final size:22
Alignment explanation
Indices: 21582438--21582484 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
21582428 CCCGATATTA
*
21582438 ATAAAATATTATTTTTT-TAAT
1 ATAAAATATTATTTTTTAAAAT
21582459 ATAAAATATTATTTTTTAAAAT
1 ATAAAATATTATTTTTTAAAAT
21582481 ATAA
1 ATAA
21582485 TTATATAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
ATAAAATATTATTTTTTAAAAT
Found at i:21583490 original size:18 final size:18
Alignment explanation
Indices: 21583469--21583504 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
21583459 TAAATAAAAT
21583469 TTTTTTATAAAATATTTA
1 TTTTTTATAAAATATTTA
**
21583487 TTTTTTATTTAATATTTA
1 TTTTTTATAAAATATTTA
21583505 AAAATATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTTTATAAAATATTTA
Found at i:21583955 original size:12 final size:12
Alignment explanation
Indices: 21583938--21584001 Score: 56
Period size: 12 Copynumber: 5.2 Consensus size: 12
21583928 TAATATTTGA
21583938 ATTTATTTAAAT
1 ATTTATTTAAAT
21583950 ATTTATTTAAAT
1 ATTTATTTAAAT
* ** *
21583962 TTGTTAAAATATAT
1 AT-TT-ATTTAAAT
21583976 ATTTATTTAAAT
1 ATTTATTTAAAT
* *
21583988 TTTTATTAAAAT
1 ATTTATTTAAAT
21584000 AT
1 AT
21584002 AAAATAAATA
Statistics
Matches: 39, Mismatches: 11, Indels: 4
0.72 0.20 0.07
Matches are distributed among these distances:
12 29 0.74
13 4 0.10
14 6 0.15
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (12 bp):
ATTTATTTAAAT
Done.