Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 136 of 190
Found at i:22001847 original size:160 final size:161
Alignment explanation
Indices: 22001465--22002203 Score: 790
Period size: 161 Copynumber: 4.6 Consensus size: 161
22001455 CATTTGGGCC
* * * * * *
22001465 TTTCACATATATCAA-TCAT-GAAAATCAAGTTCGATCATTCGAAAAAGTTGAATATCATGTATT
1 TTTCACACATATCAACT-ATAG-AAACCAAGTTCAATCATTCGGATAAGTTTAATATCATGTATT
* ** * * * **
22001528 GAAGCCATCCAAACTGTTAAAATAGATTAATAACAGCTAATTTGTATTTTTGCCTTTTAACGATA
64 GAAGCTATCCAAACTGTTAAAATAGAACAATAACATCAAATTTGTATTTTTACCTTTTAACGGCA
* *
22001593 -AAAATAATCCTAAATAGATGTAAATGATAACTT
129 CAAAAT-ATCTTAAATAGATGTAAACGATAACTT
* * * * *
22001626 TTTCACACATATCAATTGTAGAAACTAAGTTCAATCATT-GGAAAAGTTTAATATAATGTATTGA
1 TTTCACACATATCAACTATAGAAACCAAGTTCAATCATTCGGATAAGTTTAATATCATGTATTGA
* * * * *
22001690 AGCTATCCAAACTGTTAAAACAGAACCATAATATCAAATTTATA-TTTTACCTTTTAACGGCATA
66 AGCTATCCAAACTGTTAAAATAGAACAATAACATCAAATTTGTATTTTTACCTTTTAACGGCACA
* *
22001754 AAATATCTTAAATAGATGTAAACGTTAGCTT
131 AAATATCTTAAATAGATGTAAACGATAACTT
* * * * * *
22001785 TTTCACACAAATCAACTATAAAAACCAAGTTTAATTATTCTGACAAGTTTAATATCATGTATTGA
1 TTTCACACATATCAACTATAGAAACCAAGTTCAATCATTCGGATAAGTTTAATATCATGTATTGA
* * * * * *
22001850 AGCTATGCAAACTGTTAAAATAGAACAATAACAACAAATTTGCATGTTTGCCTTTTAACAGCACA
66 AGCTATCCAAACTGTTAAAATAGAACAATAACATCAAATTTGTATTTTTACCTTTTAACGGCACA
* * * *
22001915 AAAAATCTTAAACAGACGTAAATGATAACTT
131 AAATATCTTAAATAGATGTAAACGATAACTT
* *
22001946 TTTCACACATATCAACTATGGAAACCAAGTTCAATCATTCGGATAAGTTTAATATCATGTACT-A
1 TTTCACACATATCAACTATAGAAACCAAGTTCAATCATTCGGATAAGTTTAATATCATGTATTGA
** * *
22002010 GAGCTATCCAAACTGTTAAAATAGAACAAT-TTATCCAAATTTGTATTTTTACCTATTAACGTCA
66 -AGCTATCCAAACTGTTAAAATAGAACAATAACAT-CAAATTTGTATTTTTACCTTTTAACGGCA
* *
22002074 CAAAATGTCTTAAATAGATGTAAACAATAACTT
129 CAAAATATCTTAAATAGATGTAAACGATAACTT
* * * * * * * * *
22002107 TTTCATACATATTAATTGTAGAAACCAAGGTCAGTAATTGGGATAAGTTTAATATCATGAATTGA
1 TTTCACACATATCAACTATAGAAACCAAGTTCAATCATTCGGATAAGTTTAATATCATGTATTGA
* * * **
22002172 AACTATCAAAACTATTAAACCAGAACAATAAC
66 AGCTATCCAAACTGTTAAAATAGAACAATAAC
22002204 TGTAATTGCA
Statistics
Matches: 476, Mismatches: 93, Indels: 17
0.81 0.16 0.03
Matches are distributed among these distances:
159 70 0.15
160 123 0.26
161 280 0.59
162 3 0.01
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.33
Consensus pattern (161 bp):
TTTCACACATATCAACTATAGAAACCAAGTTCAATCATTCGGATAAGTTTAATATCATGTATTGA
AGCTATCCAAACTGTTAAAATAGAACAATAACATCAAATTTGTATTTTTACCTTTTAACGGCACA
AAATATCTTAAATAGATGTAAACGATAACTT
Found at i:22001938 original size:320 final size:321
Alignment explanation
Indices: 22001509--22002203 Score: 853
Period size: 320 Copynumber: 2.2 Consensus size: 321
22001499 TCATTCGAAA
* * ** * * *
22001509 AAGTTGAATATCATGTATTGAAGCCATCCAAACTGTTAAAATAGATTAATAACAGCTAATTTGTA
1 AAGTTTAATATCATGTATTGAAGCTAT-CAAACTGTTAAAATAGAACAATAACAACAAATTTGCA
* * *
22001574 TTTTTGCCTTTTAACGATAAAAATAATCCTAAATAGATGTAAATGATAACTTTTTCACACATATC
65 TGTTTGCCTTTTAACGATAAAAATAATCCTAAACAGACGTAAATGATAACTTTTTCACACATATC
* * * *
22001639 AATTGTAGAAACTAAGTTCAATCATT-GGAAAAGTTTAATATAATGTA-TTGAAGCTATCCAAAC
130 AACTATAGAAACCAAGTTCAATCATTCGGAAAAGTTTAATATAATGTACTAG-AGCTATCCAAAC
* * *
22001702 TGTTAAAACAGAACCATAATAT-CAAATTTATA-TTTTACCTTTTAACGGCATAAAATATCTTAA
194 TGTTAAAACAGAACAAT-ATATCCAAATTTATATTTTTACCTATTAACGGCACAAAATATCTTAA
** * * * * *
22001765 ATAGATGTAAACGTTAGCTTTTTCACACAAATCAACTATAAAAACCAAGTTTAATTATTCTGAC
258 ATAGATGTAAACAATAACTTTTTCACACAAATCAACTATAAAAACCAAGGTCAATAATTCGGAC
22001829 AAGTTTAATATCATGTATTGAAGCTATGCAAACTGTTAAAATAGAACAATAACAACAAATTTGCA
1 AAGTTTAATATCATGTATTGAAGCTAT-CAAACTGTTAAAATAGAACAATAACAACAAATTTGCA
* *
22001894 TGTTTGCCTTTTAACAGCA-CAAAA-AATCTTAAACAGACGTAAATGATAACTTTTTCACACATA
65 TGTTTGCCTTTTAAC-G-ATAAAAATAATCCTAAACAGACGTAAATGATAACTTTTTCACACATA
* * *
22001957 TCAACTATGGAAACCAAGTTCAATCATTCGGATAAGTTTAATATCATGTACTAGAGCTATCCAAA
128 TCAACTATAGAAACCAAGTTCAATCATTCGGAAAAGTTTAATATAATGTACTAGAGCTATCCAAA
* * * * *
22002022 CTGTTAAAATAGAACAATTTATCCAAATTTGTATTTTTACCTATTAACGTCACAAAATGTCTTAA
193 CTGTTAAAACAGAACAATATATCCAAATTTATATTTTTACCTATTAACGGCACAAAATATCTTAA
* * * * * * * * *
22002087 ATAGATGTAAACAATAACTTTTTCATACATATTAATTGTAGAAACCAAGGTCAGTAATTGGGAT
258 ATAGATGTAAACAATAACTTTTTCACACAAATCAACTATAAAAACCAAGGTCAATAATTCGGAC
* * * **
22002151 AAGTTTAATATCATGAATTGAAACTATCAAAACTATTAAACCAGAACAATAAC
1 AAGTTTAATATCATGTATTGAAGCTATC-AAACTGTTAAAATAGAACAATAAC
22002204 TGTAATTGCA
Statistics
Matches: 319, Mismatches: 49, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
320 134 0.42
321 61 0.19
322 124 0.39
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.33
Consensus pattern (321 bp):
AAGTTTAATATCATGTATTGAAGCTATCAAACTGTTAAAATAGAACAATAACAACAAATTTGCAT
GTTTGCCTTTTAACGATAAAAATAATCCTAAACAGACGTAAATGATAACTTTTTCACACATATCA
ACTATAGAAACCAAGTTCAATCATTCGGAAAAGTTTAATATAATGTACTAGAGCTATCCAAACTG
TTAAAACAGAACAATATATCCAAATTTATATTTTTACCTATTAACGGCACAAAATATCTTAAATA
GATGTAAACAATAACTTTTTCACACAAATCAACTATAAAAACCAAGGTCAATAATTCGGAC
Found at i:22005686 original size:21 final size:21
Alignment explanation
Indices: 22005662--22005701 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
22005652 CACTTTGAAC
22005662 ATCACGATCACCAACTTGAGT
1 ATCACGATCACCAACTTGAGT
**
22005683 ATCATTATCACCAACTTGA
1 ATCACGATCACCAACTTGA
22005702 ATAATAAAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.28, G:0.10, T:0.28
Consensus pattern (21 bp):
ATCACGATCACCAACTTGAGT
Found at i:22008897 original size:126 final size:126
Alignment explanation
Indices: 22008657--22008902 Score: 336
Period size: 126 Copynumber: 1.9 Consensus size: 126
22008647 TAAAAGTGCA
* **
22008657 CCTTTAATAATCCCTAAAAAATTTTAGAGAAAATTATTGAAGGTATTTTTTTTTTGTAGAAAACA
1 CCTTTAATAATCCCTAAAAAATTTTAAAGAAAATTATTGAAGG-ACGTTTTTTTTGTAGAAAACA
* * * *
22008722 CCTTTAAGAATCCCTTCCAAGTTTTTATCAGGGATTGTTTAAGGCATTTTTAGTCACAAGCG
65 CCTTCAAGAATCCCTTCCAAGTTTTTATCAGGGATTATTGAAGGCATTTTAAGTCACAAGCG
* *
22008784 CCTTTAATAATCCCCTAAAAAGTTTTAAAGGAAATTATTGAAGG-CGTTTTTTTTGTAGAAAACA
1 CCTTTAATAAT-CCCTAAAAAATTTTAAAGAAAATTATTGAAGGACGTTTTTTTTGTAGAAAACA
* *
22008848 CCTTCAATAATCCTCTT-CAA-TTTTTATCAAGGGATTATTGAAGGTATTTTAAGTC
65 CCTTCAAGAATCC-CTTCCAAGTTTTTATC-AGGGATTATTGAAGGCATTTTAAGTC
22008903 CATAAAGAGT
Statistics
Matches: 105, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
125 8 0.08
126 54 0.51
127 14 0.13
128 29 0.28
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (126 bp):
CCTTTAATAATCCCTAAAAAATTTTAAAGAAAATTATTGAAGGACGTTTTTTTTGTAGAAAACAC
CTTCAAGAATCCCTTCCAAGTTTTTATCAGGGATTATTGAAGGCATTTTAAGTCACAAGCG
Found at i:22012036 original size:1 final size:1
Alignment explanation
Indices: 22012030--22012056 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
22012020 GCAGGACACC
22012030 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
22012057 CACGCTAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:22013482 original size:6 final size:6
Alignment explanation
Indices: 22013471--22013503 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
22013461 AATAATAAAT
22013471 TTAATA TTAATA TTAAT- TTAATA TTAAATA TTA
1 TTAATA TTAATA TTAATA TTAATA TT-AATA TTA
22013504 TAAACATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
5 5 0.20
6 14 0.56
7 6 0.24
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TTAATA
Found at i:22013493 original size:11 final size:12
Alignment explanation
Indices: 22013471--22013503 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
22013461 AATAATAAAT
22013471 TTAATATTAATA
1 TTAATATTAATA
22013483 TTAAT-TTAATA
1 TTAATATTAATA
22013494 TTAAATATTA
1 TT-AATATTA
22013504 TAAACATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 8 0.42
12 8 0.42
13 3 0.16
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TTAATATTAATA
Found at i:22013550 original size:8 final size:7
Alignment explanation
Indices: 22013389--22013552 Score: 80
Period size: 7 Copynumber: 23.7 Consensus size: 7
22013379 TAATTTAATA
22013389 AAATATT
1 AAATATT
22013396 AAATATT
1 AAATATT
22013403 AAAT-TAT
1 AAATAT-T
* *
22013410 ATAACACT
1 A-AATATT
22013418 AAATATT
1 AAATATT
22013425 ---TGATT
1 AAAT-ATT
*
22013430 AAATAAT
1 AAATATT
22013437 AAATTATTT
1 AAA-TA-TT
* *
22013446 TATTATT
1 AAATATT
*
22013453 AAATAAT
1 AAATATT
*
22013460 AAATAAT
1 AAATATT
22013467 AAAT-TT
1 AAATATT
22013473 -AATATT
1 AAATATT
22013479 -AATATT
1 AAATATT
22013485 -AAT-TT
1 AAATATT
22013490 -AATATT
1 AAATATT
22013496 AAATATTAT
1 AAATA-T-T
*
22013505 AAACATT
1 AAATATT
* *
22013512 ATACATT
1 AAATATT
22013519 AAATATT
1 AAATATT
22013526 ATAATATT
1 A-AATATT
22013534 AAATA-T
1 AAATATT
22013540 AAATATTT
1 AAATA-TT
22013548 AAATA
1 AAATA
22013553 AATTTTGAAT
Statistics
Matches: 124, Mismatches: 16, Indels: 33
0.72 0.09 0.19
Matches are distributed among these distances:
4 1 0.01
5 11 0.09
6 21 0.17
7 60 0.48
8 24 0.19
9 7 0.06
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (7 bp):
AAATATT
Found at i:22013666 original size:23 final size:22
Alignment explanation
Indices: 22013574--22013666 Score: 59
Period size: 23 Copynumber: 4.2 Consensus size: 22
22013564 ATATAATATC
* *
22013574 AAATATTTAATTAATTTAGTATG
1 AAATATTTAATTAATTTAAT-TT
*
22013597 AAA-AATTAATT-A-TTAA-TT
1 AAATATTTAATTAATTTAATTT
* **
22013615 ATGATATTTAATATTGTTTAATTT
1 A-AATATTTAAT-TAATTTAATTT
*
22013639 TAATATTTAATTAATTTAATTT
1 AAATATTTAATTAATTTAATTT
22013661 CAAATA
1 -AAATA
22013667 CTAAATACTT
Statistics
Matches: 52, Mismatches: 11, Indels: 14
0.68 0.14 0.18
Matches are distributed among these distances:
18 2 0.04
19 1 0.02
20 9 0.17
21 2 0.04
22 16 0.31
23 20 0.38
24 2 0.04
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (22 bp):
AAATATTTAATTAATTTAATTT
Found at i:22013887 original size:24 final size:23
Alignment explanation
Indices: 22013854--22013903 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 23
22013844 AATTAATTAA
*
22013854 ATTTAATATT-TTCTAATTATATT
1 ATTTAATATTATT-TAATTATAAT
22013877 ATTTAATTATTATTTAATTATAAT
1 ATTTAA-TATTATTTAATTATAAT
22013901 ATT
1 ATT
22013904 GTTTAAATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 6 0.25
24 16 0.67
25 2 0.08
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (23 bp):
ATTTAATATTATTTAATTATAAT
Found at i:22013889 original size:11 final size:11
Alignment explanation
Indices: 22013873--22013897 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
22013863 TTTCTAATTA
22013873 TATTATTTAAT
1 TATTATTTAAT
22013884 TATTATTTAAT
1 TATTATTTAAT
22013895 TAT
1 TAT
22013898 AATATTGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
TATTATTTAAT
Found at i:22014009 original size:19 final size:19
Alignment explanation
Indices: 22013964--22014010 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
22013954 ATAATAAAAT
*
22013964 ATATTATTTAAATTTTATA
1 ATATTATTTAAATTATATA
22013983 AT-TGTATTT-AATTAATATA
1 ATAT-TATTTAAATT-ATATA
22014002 ATATTATTT
1 ATATTATTT
22014011 TTATTAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
18 5 0.21
19 18 0.75
20 1 0.04
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (19 bp):
ATATTATTTAAATTATATA
Found at i:22016564 original size:3 final size:3
Alignment explanation
Indices: 22016556--22016589 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
22016546 TAATTTAACT
*
22016556 TTA TTA TTA TTA TTA TTC TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
22016590 CATCATCATC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:22016594 original size:3 final size:3
Alignment explanation
Indices: 22016588--22016626 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
22016578 TATTATTATT
22016588 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
22016627 TTTTCTTTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
ATC
Found at i:22016836 original size:21 final size:21
Alignment explanation
Indices: 22016799--22016838 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
22016789 CTCAAGTACC
*
22016799 ATTTTTTCTTTTGCAAATCTT
1 ATTTTTTCTCTTGCAAATCTT
22016820 ATTTTTTCATCTT-CAAATC
1 ATTTTTTC-TCTTGCAAATC
22016839 CAAAAATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.23, C:0.17, G:0.03, T:0.57
Consensus pattern (21 bp):
ATTTTTTCTCTTGCAAATCTT
Found at i:22017762 original size:3 final size:3
Alignment explanation
Indices: 22017754--22017810 Score: 89
Period size: 3 Copynumber: 18.7 Consensus size: 3
22017744 TAAAATAAAC
22017754 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-A ATAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A
22017799 ATA ATAA ATA AT
1 ATA AT-A ATA AT
22017811 TGATATAAAA
Statistics
Matches: 51, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
2 2 0.04
3 43 0.84
4 6 0.12
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:22022687 original size:80 final size:80
Alignment explanation
Indices: 22022594--22022841 Score: 313
Period size: 80 Copynumber: 3.1 Consensus size: 80
22022584 AAAAACACCA
* *
22022594 TTTAGTAAACCATTCAGCATATGATTCAGCCCCCCAATATCATACAAAACCATTCAGCAAAACAA
1 TTTAGCAAACCATTCAGCATATGATTCAGCCCCCCAATATCATACAATACCATTCAGCAAAACAA
*
22022659 TATAAGACAACAAGG
66 TATCAGACAACAAGG
** * ** * *
22022674 TTTAGCAAACCATTCAGCATATGATTCATTCCCCCAATATCATGCAATACCATTTGGTAATACAA
1 TTTAGCAAACCATTCAGCATATGATTCAGCCCCCCAATATCATACAATACCATTCAGCAAAACAA
* *
22022739 TATCATACAATAAGG
66 TATCAGACAACAAGG
* * * *
22022754 TTCAGTAAACCATTCAGCAT-TCAATTCAGCCCCCTAATATCATACAATACCATTCAGCAAAA-A
1 TTTAGCAAACCATTCAGCATAT-GATTCAGCCCCCCAATATCATACAATACCATTCAGCAAAACA
*
22022817 AAATCAGACAACAAGG
65 ATATCAGACAACAAGG
22022833 TTT-GCAAAC
1 TTTAGCAAAC
22022842 TATAATATTT
Statistics
Matches: 139, Mismatches: 28, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
78 5 0.04
79 17 0.12
80 117 0.84
ACGTcount: A:0.41, C:0.25, G:0.10, T:0.25
Consensus pattern (80 bp):
TTTAGCAAACCATTCAGCATATGATTCAGCCCCCCAATATCATACAATACCATTCAGCAAAACAA
TATCAGACAACAAGG
Found at i:22023991 original size:17 final size:17
Alignment explanation
Indices: 22023966--22024006 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
22023956 CTCGATTATT
*
22023966 GAAGGTGTTTTTCACTA
1 GAAGATGTTTTTCACTA
22023983 GAAGATGTTTTTCACTA
1 GAAGATGTTTTTCACTA
22024000 GAAGATG
1 GAAGATG
22024007 CCATTACTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.37
Consensus pattern (17 bp):
GAAGATGTTTTTCACTA
Found at i:22034257 original size:16 final size:16
Alignment explanation
Indices: 22034236--22034272 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
22034226 GTTTCTGATT
22034236 TTTTTCGACAAAAAAA
1 TTTTTCGACAAAAAAA
22034252 TTTTTCGACAAAAAAA
1 TTTTTCGACAAAAAAA
22034268 TTTTT
1 TTTTT
22034273 TTTTACCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.43, C:0.11, G:0.05, T:0.41
Consensus pattern (16 bp):
TTTTTCGACAAAAAAA
Found at i:22034536 original size:16 final size:16
Alignment explanation
Indices: 22034507--22034567 Score: 56
Period size: 16 Copynumber: 3.9 Consensus size: 16
22034497 TAAATCGGAT
* *
22034507 AAGGAATAAGAAGAAG
1 AAGGAAAAAAAAGAAG
*
22034523 AAGGAAAAAAAAGAAA
1 AAGGAAAAAAAAGAAG
*
22034539 AAAGAAAGAAAAA-AAG
1 AAGGAAA-AAAAAGAAG
22034555 AA--AAAAAAAAGAA
1 AAGGAAAAAAAAGAA
22034568 AAAAAATACA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
13 5 0.13
14 5 0.13
16 23 0.61
17 5 0.13
ACGTcount: A:0.79, C:0.00, G:0.20, T:0.02
Consensus pattern (16 bp):
AAGGAAAAAAAAGAAG
Found at i:22034546 original size:11 final size:11
Alignment explanation
Indices: 22034527--22034573 Score: 62
Period size: 11 Copynumber: 4.4 Consensus size: 11
22034517 AAGAAGAAGG
22034527 AAAAA-AAAGA
1 AAAAAGAAAGA
22034537 AAAAAGAAAGAA
1 AAAAAGAAAG-A
*
22034549 AAAAAGAAAAA
1 AAAAAGAAAGA
22034560 AAAAAGAAA-A
1 AAAAAGAAAGA
22034570 AAAA
1 AAAA
22034574 TACAGAAAAC
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
10 10 0.29
11 14 0.41
12 10 0.29
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAGA
Found at i:22034549 original size:20 final size:20
Alignment explanation
Indices: 22034520--22034573 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 20
22034510 GAATAAGAAG
*
22034520 AAGAAGGAAAAAAAAGAAAA
1 AAGAAAGAAAAAAAAGAAAA
22034540 AAGAAAG-AAAAAAAGAAAA
1 AAGAAAGAAAAAAAAGAAAA
*
22034559 AAAAAAGAAAAAAAA
1 AAGAAAGAAAAAAAA
22034574 TACAGAAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 18 0.58
20 13 0.42
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (20 bp):
AAGAAAGAAAAAAAAGAAAA
Found at i:22034561 original size:30 final size:32
Alignment explanation
Indices: 22034527--22034594 Score: 95
Period size: 30 Copynumber: 2.2 Consensus size: 32
22034517 AAGAAGAAGG
*
22034527 AAAAAAAAGAAAAAAGA-A-AGAAAAAAAGAA
1 AAAAAAAAGAAAAAAAATACAGAAAAAAAGAA
**
22034557 AAAAAAAAGAAAAAAAATACAGAAAACGAGAA
1 AAAAAAAAGAAAAAAAATACAGAAAAAAAGAA
22034589 AAAAAA
1 AAAAAA
22034595 TATTAAATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 16 0.48
31 1 0.03
32 16 0.48
ACGTcount: A:0.84, C:0.03, G:0.12, T:0.01
Consensus pattern (32 bp):
AAAAAAAAGAAAAAAAATACAGAAAAAAAGAA
Found at i:22034865 original size:101 final size:99
Alignment explanation
Indices: 22034731--22034948 Score: 341
Period size: 101 Copynumber: 2.2 Consensus size: 99
22034721 AAATAAAAAG
* *
22034731 AAAATAAA-TTTTTTTTTGTTCGATAGAAAAGGGCTCCTCTCAACAGAAGTTCAATCGATATTTT
1 AAAAAAAATTTTTTTTTTGTTCAATAGAAAAGGGCTCCTCTCAACAGAAGTTCAATCGATATTTT
22034795 TGAAAGTTTAAAAGGCTCCTCTTAGCAGAGGCTCA
66 TGAAAGTTTAAAAGGCTCCTCTTAGCAGAGGCT-A
* *
22034830 AAAAAAAATTTTTTTTTTGGTTCAACT-GAAAAGGGCTCCTCTCAACAGAGGTTCAATTGATATT
1 AAAAAAAATTTTTTTTTT-GTTCAA-TAGAAAAGGGCTCCTCTCAACAGAAGTTCAATCGATATT
*
22034894 TTTGAAAGTTTAAAAGGCTCCTCTTAGCAGAGGCTT
64 TTTGAAAGTTTAAAAGGCTCCTCTTAGCAGAGGCTA
22034930 AAAAAAAATTTGTTTTTTT
1 AAAAAAAATTT-TTTTTTT
22034949 AAAGTTCATC
Statistics
Matches: 110, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
99 7 0.06
100 20 0.18
101 82 0.75
102 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (99 bp):
AAAAAAAATTTTTTTTTTGTTCAATAGAAAAGGGCTCCTCTCAACAGAAGTTCAATCGATATTTT
TGAAAGTTTAAAAGGCTCCTCTTAGCAGAGGCTA
Found at i:22035130 original size:50 final size:49
Alignment explanation
Indices: 22034957--22035335 Score: 467
Period size: 50 Copynumber: 7.6 Consensus size: 49
22034947 TTAAAGTTCA
* * * *
22034957 TCTCAGCAAAGGCTCAACAACTTTAAAATCGCATATCAT-GAAAAGGGCTCC
1 TCTCAGCAGAGGCTCAACAACTTTAAAAT-TCTTATCTTGGAAAA--GCTCC
* * *
22035008 TCTCAGCAGAGGTTCAACAACTTTAAAAATCTCATATCTT-GAAGAGGGCTCC
1 TCTCAGCAGAGGCTCAACAACTTT-AAAAT-TCTTATCTTGGAA-A-AGCTCC
*
22035060 TCTCAGCAGAGGTTCAACAACTTTAAAAATTCTTATCTTGGAAAAGCTCC
1 TCTCAGCAGAGGCTCAACAACTTT-AAAATTCTTATCTTGGAAAAGCTCC
*
22035110 TCTCAGCAGAGGCTCAACAACTTTAAAAATTCTTATATTGGAAAAGCTCC
1 TCTCAGCAGAGGCTCAACAACTTT-AAAATTCTTATCTTGGAAAAGCTCC
* * * * *
22035160 TCTTAGTAGAGGCTCAACAACTTTAAAATCTCATATCATGAAAAAGGCTCC
1 TCTCAGCAGAGGCTCAACAACTTTAAAAT-TCTTATCTTGGAAAA-GCTCC
* * *
22035211 TTTCAGCAGAGGCTCAACAACTTTAAAATTCTTATCTTGGAAAAACTTC
1 TCTCAGCAGAGGCTCAACAACTTTAAAATTCTTATCTTGGAAAAGCTCC
* *
22035260 TCTCAGCAAAGGCTCAACAACTTTAAAATTCTTATC-TGGAAAAACTCC
1 TCTCAGCAGAGGCTCAACAACTTTAAAATTCTTATCTTGGAAAAGCTCC
22035308 TCTCAGCAGAGGCTCAACAACTTTAAAA
1 TCTCAGCAGAGGCTCAACAACTTTAAAA
22035336 ATCTCATATA
Statistics
Matches: 295, Mismatches: 27, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
48 38 0.13
49 42 0.14
50 98 0.33
51 62 0.21
52 54 0.18
53 1 0.00
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (49 bp):
TCTCAGCAGAGGCTCAACAACTTTAAAATTCTTATCTTGGAAAAGCTCC
Found at i:22035186 original size:203 final size:199
Alignment explanation
Indices: 22034966--22035347 Score: 588
Period size: 203 Copynumber: 1.9 Consensus size: 199
22034956 ATCTCAGCAA
* *
22034966 AGGCTCAACAACTTTAAAATCGCATATCATGAAAAGGGCTCCTCTCAGCAGAGGTTCAACAACTT
1 AGGCTCAACAACTTTAAAATCGCATATCATGAAAAAGGCTCCTCTCAGCAGAGGCTCAACAACTT
** * *
22035031 TAAAAATCTCATATCTT-GAAGAGGGCTCCTCTCAGCAGAGGTTCAACAACTTTAAAAATTCTTA
66 T-AAAAT-TCATATCTTGGAA-A-AACTCCTCTCAGCAAAGGCTCAACAACTTT-AAAATTCTTA
* *
22035095 TCTTGGAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAAT-TCTTATATTGGAAAAGCTC
126 TC-TGGAAAAACTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATATATTGGAAAAGCTC
22035159 CTCTTAGTAG
190 CTCTTAGTAG
* *
22035169 AGGCTCAACAACTTTAAAATCTCATATCATGAAAAAGGCTCCTTTCAGCAGAGGCTCAACAACTT
1 AGGCTCAACAACTTTAAAATCGCATATCATGAAAAAGGCTCCTCTCAGCAGAGGCTCAACAACTT
* *
22035234 TAAAATTCTTATCTTGGAAAAACTTCTCTCAGCAAAGGCTCAACAACTTTAAAATTCTTATCTGG
66 TAAAATTCATATCTTGGAAAAACTCCTCTCAGCAAAGGCTCAACAACTTTAAAATTCTTATCTGG
22035299 AAAAACTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATATATT
131 AAAAACTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATATATT
22035348 TTCAAATTTG
Statistics
Matches: 165, Mismatches: 12, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
198 41 0.25
199 20 0.12
200 25 0.15
201 9 0.05
202 8 0.05
203 62 0.38
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.28
Consensus pattern (199 bp):
AGGCTCAACAACTTTAAAATCGCATATCATGAAAAAGGCTCCTCTCAGCAGAGGCTCAACAACTT
TAAAATTCATATCTTGGAAAAACTCCTCTCAGCAAAGGCTCAACAACTTTAAAATTCTTATCTGG
AAAAACTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATATATTGGAAAAGCTCCTCTTA
GTAG
Found at i:22044269 original size:16 final size:16
Alignment explanation
Indices: 22044238--22044270 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
22044228 AGTCTCAAAT
22044238 TTTTTCTTTTCATTTC
1 TTTTTCTTTTCATTTC
22044254 TTTTT-TTTTCAGTTTC
1 TTTTTCTTTTCA-TTTC
22044270 T
1 T
22044271 AATTCTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.06, C:0.15, G:0.03, T:0.76
Consensus pattern (16 bp):
TTTTTCTTTTCATTTC
Found at i:22044269 original size:21 final size:21
Alignment explanation
Indices: 22044237--22044281 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
22044227 AAGTCTCAAA
* *
22044237 TTTTTTCTTTTC-ATTTCTTT
1 TTTTTTCGTTTCTAATTCTTT
22044257 TTTTTTCAGTTTCTAATTCTTT
1 TTTTTTC-GTTTCTAATTCTTT
22044279 TTT
1 TTT
22044282 CATAAGCTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 7 0.33
21 4 0.19
22 10 0.48
ACGTcount: A:0.09, C:0.13, G:0.02, T:0.76
Consensus pattern (21 bp):
TTTTTTCGTTTCTAATTCTTT
Found at i:22047836 original size:27 final size:27
Alignment explanation
Indices: 22047801--22047898 Score: 178
Period size: 27 Copynumber: 3.6 Consensus size: 27
22047791 TGGGTTCTTA
22047801 AAACGACGTCGTTTTGGGTCTTTAATG
1 AAACGACGTCGTTTTGGGTCTTTAATG
22047828 AAACGACGTCGTTTTGGGTCTTTAATG
1 AAACGACGTCGTTTTGGGTCTTTAATG
*
22047855 AAACGACGTCATTTTGGGTCTTTAATG
1 AAACGACGTCGTTTTGGGTCTTTAATG
*
22047882 AAACGACATCGTTTTGG
1 AAACGACGTCGTTTTGG
22047899 TTTTGATGAT
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.36
Consensus pattern (27 bp):
AAACGACGTCGTTTTGGGTCTTTAATG
Found at i:22048208 original size:17 final size:17
Alignment explanation
Indices: 22048162--22048208 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
22048152 AAAAAATATA
22048162 TTTTTTTTGT-TTTATG
1 TTTTTTTTGTGTTTATG
22048178 TGTTTTTTTG-GTTTAT-
1 T-TTTTTTTGTGTTTATG
22048194 TTTTGTTTTGTGTTT
1 TTTT-TTTTGTGTTT
22048209 TTACAGGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
15 3 0.11
16 7 0.26
17 17 0.63
ACGTcount: A:0.04, C:0.00, G:0.17, T:0.79
Consensus pattern (17 bp):
TTTTTTTTGTGTTTATG
Found at i:22048221 original size:27 final size:28
Alignment explanation
Indices: 22048165--22048223 Score: 68
Period size: 27 Copynumber: 2.1 Consensus size: 28
22048155 AAATATATTT
** *
22048165 TTTTTGTTTTATGTGTTTTTTTGGTTTA
1 TTTTTGTTTTATGTGTTTTTCAGGTATA
22048193 TTTTTG-TTT-TGTGTTTTTACAGGTATA
1 TTTTTGTTTTATGTGTTTTT-CAGGTATA
22048220 TTTT
1 TTTT
22048224 GGTGTTGGGT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 9 0.33
27 12 0.44
28 6 0.22
ACGTcount: A:0.10, C:0.02, G:0.17, T:0.71
Consensus pattern (28 bp):
TTTTTGTTTTATGTGTTTTTCAGGTATA
Found at i:22048580 original size:18 final size:19
Alignment explanation
Indices: 22048545--22048592 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
22048535 TGAATCGGAT
22048545 AAGAAAGAAAA-A-GAAAGA
1 AAGAAA-AAAAGAGGAAAGA
22048563 AA-AAAAAAAGAGGAAAGA
1 AAGAAAAAAAGAGGAAAGA
*
22048581 AAGAAGAAAAGA
1 AAGAAAAAAAGA
22048593 AAAAAAGAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 4 0.15
17 4 0.15
18 10 0.38
19 8 0.31
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (19 bp):
AAGAAAAAAAGAGGAAAGA
Found at i:22048608 original size:28 final size:27
Alignment explanation
Indices: 22048545--22048614 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 27
22048535 TGAATCGGAT
22048545 AAGA-AAGAA-AAAGAAAGAAAAAAAA
1 AAGAGAAGAAGAAAGAAAGAAAAAAAA
*
22048570 AAGAGGA-AAGAAAG-AAGAAAAGAAAAA
1 AAGAGAAGAAGAAAGAAAG-AAA-AAAAA
22048597 AAGAGAAGAAGAAA-AAAG
1 AAGAGAAGAAGAAAGAAAG
22048615 CAGAAAATGG
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
25 9 0.24
26 8 0.22
27 11 0.30
28 9 0.24
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (27 bp):
AAGAGAAGAAGAAAGAAAGAAAAAAAA
Found at i:22048619 original size:16 final size:15
Alignment explanation
Indices: 22048559--22048619 Score: 54
Period size: 15 Copynumber: 3.9 Consensus size: 15
22048549 AAGAAAAAGA
*
22048559 AAGAAAAAA-AAAAG
1 AAGAAAAAAGAGAAG
*
22048573 AGGAAAGAAAGAAGAA-
1 AAGAAA-AAAG-AGAAG
22048589 AAGAAAAAAAGAGAAG
1 AAG-AAAAAAGAGAAG
22048605 AAGAAAAAAGCAGAA
1 AAGAAAAAAG-AGAA
22048620 AATGGGAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
14 5 0.13
15 14 0.37
16 13 0.34
17 6 0.16
ACGTcount: A:0.75, C:0.02, G:0.23, T:0.00
Consensus pattern (15 bp):
AAGAAAAAAGAGAAG
Found at i:22048645 original size:3 final size:3
Alignment explanation
Indices: 22048637--22048681 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
22048627 AAAAATATTA
22048637 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
22048682 GGTGTTTACA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:22048994 original size:134 final size:134
Alignment explanation
Indices: 22048831--22049129 Score: 386
Period size: 134 Copynumber: 2.2 Consensus size: 134
22048821 TACAAATGCA
* * * * *
22048831 ACCAGAGCAGCAGTGTTTTTCTTAAAAAAACT-TCACTAAATTAGCGGCATCTCAAAGATACAAA
1 ACCAAAGCAACAGTGTTTTTCTTATAAAAA-TATCACTAAATTAACGACATCTCAAAGATACAAA
* ** * * *
22048895 CGCCGCTAATATAGAGGTGTTTTCATATACAAATGCCTCTAAAGTAGTAGCGGTTT-AAGTTACA
65 CACCGCTAATATAGAGGCATTTTCAGATACAAATGCCTCTAAAGTAATAGCAGTTTCAA-TTACA
*
22048959 AACACT
129 AACACC
* *
22048965 ACCAAAGTAACAGTGTTTTTCTTATAAAAATATCACTAAATTAACGACATCTGAAAGATACAAAC
1 ACCAAAGCAACAGTGTTTTTCTTATAAAAATATCACTAAATTAACGACATCTCAAAGATACAAAC
* * *
22049030 ACTGCTAATATAGAGGCATTTTTAGATACAAATGCCTCTAAAGTAATAGCATTTTCAATTACAAA
66 ACCGCTAATATAGAGGCATTTTCAGATACAAATGCCTCTAAAGTAATAGCAGTTTCAATTACAAA
*
22049095 CGCC
131 CACC
* *
22049099 ACCAAAGCAACAATGTTTTTCTCATAAAAAT
1 ACCAAAGCAACAGTGTTTTTCTTATAAAAAT
22049130 GTAACTAATT
Statistics
Matches: 142, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
133 1 0.01
134 139 0.98
135 2 0.01
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.28
Consensus pattern (134 bp):
ACCAAAGCAACAGTGTTTTTCTTATAAAAATATCACTAAATTAACGACATCTCAAAGATACAAAC
ACCGCTAATATAGAGGCATTTTCAGATACAAATGCCTCTAAAGTAATAGCAGTTTCAATTACAAA
CACC
Found at i:22049487 original size:125 final size:125
Alignment explanation
Indices: 22049374--22049641 Score: 310
Period size: 126 Copynumber: 2.2 Consensus size: 125
22049364 ATAGAACACT
* * ** *
22049374 AATAAAATCACTAGTGATGATTTTATT-AATA-ATTTAC-TTAAAAA-TTTTTCTAAAATATTCT
1 AATAAAATCACAAGTGATGATTTT-TTAAAAATATTTACACAAAAAAGTTTTTATAAAATATTCT
22049435 AAAAGTGTTAGAAATATTTTAAAAATTTTCAAGCATAGAAAAAAAGACATTATTAATAAAA
65 AAAAGTGTTAGAAATATTTTAAAAATTTTCAAGCATAGAAAAAAAGACATTATTAATAAAA
* *
22049496 AATAAAGTCACAAGTGGTGATTTTTTAAAAAATATTTACACAAAAAAGTTTTTATAAAATATTCT
1 AATAAAATCACAAGTGATGATTTTTT-AAAAATATTTACACAAAAAAGTTTTTATAAAATATTCT
* * *
22049561 AAAAGTGTTTGAAATATTTTAGAATTTTTCAA--AT-----AAAA-A-ATTATTAATAAAA
65 AAAAGTGTTAGAAATATTTTAAAAATTTTCAAGCATAGAAAAAAAGACATTATTAATAAAA
* * *
22049613 AATAAAGTCACAAGTGGTGATTTTATAAA
1 AATAAAATCACAAGTGATGATTTTTTAAA
22049642 GAGATTTTCT
Statistics
Matches: 130, Mismatches: 11, Indels: 16
0.83 0.07 0.10
Matches are distributed among these distances:
116 3 0.02
117 38 0.29
118 1 0.01
119 4 0.03
121 2 0.02
122 21 0.16
123 3 0.02
124 8 0.06
125 5 0.04
126 45 0.35
ACGTcount: A:0.49, C:0.06, G:0.09, T:0.37
Consensus pattern (125 bp):
AATAAAATCACAAGTGATGATTTTTTAAAAATATTTACACAAAAAAGTTTTTATAAAATATTCTA
AAAGTGTTAGAAATATTTTAAAAATTTTCAAGCATAGAAAAAAAGACATTATTAATAAAA
Found at i:22049608 original size:117 final size:120
Alignment explanation
Indices: 22049413--22049641 Score: 331
Period size: 126 Copynumber: 1.9 Consensus size: 120
22049403 TAATTTACTT
*
22049413 AAAAATTTTTCTAAAATATTCTAAAAGTGTTAGAAATATTTTAAAAATTTTCAAGCATAGAAAAA
1 AAAAATTTTTATAAAATATTCTAAAAGTGTTAGAAATATTTTAAAAATTTTCAA-CAT----AAA
*
22049478 AAGACATTATTAATAAAAAATAAAGTCACAAGTGGTGATTTTTTAAAAAATATTTACACA
61 AAGACATTATTAATAAAAAATAAAGTCACAAGTGGTGATTTTATAAAAAATATTTACACA
* * *
22049538 AAAAAGTTTTTATAAAATATTCTAAAAGTGTTTGAAATATTTTAGAATTTTTCAA-AT-AAAA-A
1 AAAAA-TTTTTATAAAATATTCTAAAAGTGTTAGAAATATTTTAAAAATTTTCAACATAAAAAGA
22049600 -ATTATTAATAAAAAATAAAGTCACAAGTGGTGATTTTATAAA
65 CATTATTAATAAAAAATAAAGTCACAAGTGGTGATTTTATAAA
22049642 GAGATTTTCT
Statistics
Matches: 98, Mismatches: 5, Indels: 10
0.87 0.04 0.09
Matches are distributed among these distances:
117 41 0.42
118 1 0.01
119 4 0.04
124 2 0.02
125 5 0.05
126 45 0.46
ACGTcount: A:0.50, C:0.06, G:0.09, T:0.35
Consensus pattern (120 bp):
AAAAATTTTTATAAAATATTCTAAAAGTGTTAGAAATATTTTAAAAATTTTCAACATAAAAAGAC
ATTATTAATAAAAAATAAAGTCACAAGTGGTGATTTTATAAAAAATATTTACACA
Found at i:22049708 original size:17 final size:19
Alignment explanation
Indices: 22049686--22049725 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
22049676 AATATTTCTA
*
22049686 ATAAAAT-A-AATAAATTC
1 ATAAAATAACAATAAAGTC
22049703 ATAAAATAACAATAAAGTC
1 ATAAAATAACAATAAAGTC
22049722 ATAA
1 ATAA
22049726 GTAGTGATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 7 0.35
18 1 0.05
19 12 0.60
ACGTcount: A:0.65, C:0.07, G:0.03, T:0.25
Consensus pattern (19 bp):
ATAAAATAACAATAAAGTC
Found at i:22060355 original size:15 final size:15
Alignment explanation
Indices: 22060337--22060370 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
22060327 TTTGCTTAAA
22060337 AAAAGAAAAAAAAGG
1 AAAAGAAAAAAAAGG
*
22060352 AAAAGAAAAAAGAGG
1 AAAAGAAAAAAAAGG
22060367 AAAA
1 AAAA
22060371 AAGGGATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (15 bp):
AAAAGAAAAAAAAGG
Found at i:22061277 original size:42 final size:42
Alignment explanation
Indices: 22061230--22061416 Score: 141
Period size: 42 Copynumber: 4.5 Consensus size: 42
22061220 AAAAAGAGAA
* * * *
22061230 TTTTAAAGTTATTAAGCCTTTTCTTAGATGAGCATTTTAAAC
1 TTTTAAAGTTATCAAGCCTCTACTTAGAGGAGCATTTTAAAC
* * *
22061272 TTTTAAAGTTATCGAGCCTCTACTTAGAGGAGCTTTTTAGA-
1 TTTTAAAGTTATCAAGCCTCTACTTAGAGGAGCATTTTAAAC
* * * * *
22061313 TTTCAAAAGTTGTCAAGCTTCTACTTAGAGGAG-TTTTTAAAAT
1 TTT-TAAAGTTATCAAGCCTCTACTTAGAGGAGCATTTT-AAAC
* * * * *
22061356 TTTTAAAGTTGTTGAA-CCTCTACTTACAAGAGC-TTTT-AAT
1 TTTTAAAGTT-ATCAAGCCTCTACTTAGAGGAGCATTTTAAAC
*
22061396 TTTTAAAAGTTATCGAGCCTC
1 TTTT-AAAGTTATCAAGCCTC
22061417 AGCCTCTGCT
Statistics
Matches: 117, Mismatches: 21, Indels: 15
0.76 0.14 0.10
Matches are distributed among these distances:
40 9 0.08
41 18 0.15
42 84 0.72
43 6 0.05
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.41
Consensus pattern (42 bp):
TTTTAAAGTTATCAAGCCTCTACTTAGAGGAGCATTTTAAAC
Found at i:22061434 original size:47 final size:47
Alignment explanation
Indices: 22061372--22061463 Score: 121
Period size: 47 Copynumber: 2.0 Consensus size: 47
22061362 AGTTGTTGAA
* * * *
22061372 CCTCTACTTACAAGAGCTTTTAATTTTTAAAAGTTATCGAGCCTCAG
1 CCTCTACTTACAAGAGCCTTTAAATTTCAAAAGTTATAGAGCCTCAG
* * *
22061419 CCTCTGCTTAGAAGAGCCTTTAAATTTCAAAAGTTGTAGAGCCTC
1 CCTCTACTTACAAGAGCCTTTAAATTTCAAAAGTTATAGAGCCTC
22061464 TACTTAAAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 38 1.00
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (47 bp):
CCTCTACTTACAAGAGCCTTTAAATTTCAAAAGTTATAGAGCCTCAG
Found at i:22061463 original size:41 final size:41
Alignment explanation
Indices: 22061252--22061469 Score: 152
Period size: 42 Copynumber: 5.1 Consensus size: 41
22061242 TAAGCCTTTT
* * * *
22061252 CTTAGATGAGCATTTTAAACTTT-TAAAGTTATCGAGCCTCTA
1 CTTAGAAGAGC-TTTTAAA-TTTCAAAAGTTGTAGAGCCTCTA
* * *
22061294 CTTAGAGGAGCTTTTTAGATTTCAAAAGTTGTCA-AGCTTCTA
1 CTTAGAAGAGC-TTTTAAATTTCAAAAGTTGT-AGAGCCTCTA
* * ** * *
22061336 CTTAGAGGAGTTTTTAAAATTTTTAAAGTTGTTGAACCTCTA
1 CTTAGAAGAGCTTTT-AAATTTCAAAAGTTGTAGAGCCTCTA
* * * * *
22061378 CTTACAAGAGCTTTTAATTTTTAAAAGTTATCGAGCCTCAGCCTCTG
1 CTTAGAAGAGCTTTTAAATTTCAAAAGTTGT--AG----AGCCTCTA
*
22061425 CTTAGAAGAGCCTTTAAATTTCAAAAGTTGTAGAGCCTCTA
1 CTTAGAAGAGCTTTTAAATTTCAAAAGTTGTAGAGCCTCTA
22061466 CTTA
1 CTTA
22061470 AAAAAGCCTC
Statistics
Matches: 137, Mismatches: 29, Indels: 21
0.73 0.16 0.11
Matches are distributed among these distances:
41 31 0.23
42 71 0.52
43 1 0.01
45 2 0.01
47 32 0.23
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (41 bp):
CTTAGAAGAGCTTTTAAATTTCAAAAGTTGTAGAGCCTCTA
Found at i:22061752 original size:3 final size:3
Alignment explanation
Indices: 22061744--22061772 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
22061734 TAATTTTAGT
22061744 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
22061773 TCTTGTCTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:22061972 original size:20 final size:21
Alignment explanation
Indices: 22061946--22061987 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
22061936 TCTCAAGTAG
*
22061946 CATTTTTTCTTCTGCAAATCC
1 CATTTTTTCATCTGCAAATCC
*
22061967 CATTTTTTCATCTTCAAATCC
1 CATTTTTTCATCTGCAAATCC
22061988 TAGAAAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.29, G:0.02, T:0.48
Consensus pattern (21 bp):
CATTTTTTCATCTGCAAATCC
Found at i:22062984 original size:120 final size:116
Alignment explanation
Indices: 22062841--22063112 Score: 297
Period size: 124 Copynumber: 2.3 Consensus size: 116
22062831 CAAAATATGA
* *
22062841 TAAAACAATAATAAA-ATCACAAGTGGTGATTTTATT-AAAA-A-TT-CACATAAAAATTTTTTT
1 TAAAA-AAAAATAAAGA-CACAAGTGGTGATTTTATTAAAAATATTTACACAAAAAAATTTTTTT
* *
22062901 TAAATA-TTCTAAAAATGTTAGAAATA-TTTAAAATTTTCCAAGTATATAAAAAACATTAT
64 TAAATATTTC-AAAAACGTTAGAAATATTTTAAAAATTT-C-A--A-AT-AAAAA-ATTAT
* *
22062960 TAATAAAAAAAGTAAAGACACAAGTGATGATTTTATTAAAAATATTTATACAAAAAAATTTTTTT
1 TAA-AAAAAAA-TAAAGACACAAGTGGTGATTTTATTAAAAATATTTACACAAAAAAATTTTTTT
*
22063025 TAAATATTTCAAAAGCGTTAGAAATATTTTTAAAAATTTCAAATAAAAAATTAT
64 TAAATATTTCAAAAACGTTAGAAATA-TTTTAAAAATTTCAAATAAAAAATTAT
* *
22063079 TAACAAAAAATAAAGTCACAAGTGGTGATTTTAT
1 TAAAAAAAAATAAAGACACAAGTGGTGATTTTAT
22063113 AAAGAGATTT
Statistics
Matches: 133, Mismatches: 10, Indels: 22
0.81 0.06 0.13
Matches are distributed among these distances:
117 22 0.17
118 6 0.05
119 15 0.11
120 29 0.22
121 7 0.05
122 2 0.02
123 2 0.02
124 36 0.27
125 4 0.03
126 10 0.08
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (116 bp):
TAAAAAAAAATAAAGACACAAGTGGTGATTTTATTAAAAATATTTACACAAAAAAATTTTTTTTA
AATATTTCAAAAACGTTAGAAATATTTTAAAAATTTCAAATAAAAAATTAT
Found at i:22064876 original size:28 final size:28
Alignment explanation
Indices: 22064844--22064929 Score: 81
Period size: 28 Copynumber: 3.2 Consensus size: 28
22064834 TTGGAATGAG
22064844 TTATAATTATTTAAAAGTAATCTTTTAC
1 TTATAATTATTTAAAAGTAATCTTTTAC
* ** * * * *
22064872 TTATAA-AAAAT-GAA-TAAT-TATGAG
1 TTATAATTATTTAAAAGTAATCTTTTAC
22064896 TTATAATTATTTAAAAGTAATCTTTTAC
1 TTATAATTATTTAAAAGTAATCTTTTAC
22064924 TTATAA
1 TTATAA
22064930 AAAATGAATA
Statistics
Matches: 40, Mismatches: 14, Indels: 8
0.65 0.23 0.13
Matches are distributed among these distances:
24 9 0.22
25 6 0.15
26 4 0.10
27 6 0.15
28 15 0.38
ACGTcount: A:0.44, C:0.05, G:0.06, T:0.45
Consensus pattern (28 bp):
TTATAATTATTTAAAAGTAATCTTTTAC
Found at i:22064900 original size:52 final size:52
Alignment explanation
Indices: 22064839--22064943 Score: 210
Period size: 52 Copynumber: 2.0 Consensus size: 52
22064829 GTCTTTTGGA
22064839 ATGAGTTATAATTATTTAAAAGTAATCTTTTACTTATAAAAAATGAATAATT
1 ATGAGTTATAATTATTTAAAAGTAATCTTTTACTTATAAAAAATGAATAATT
22064891 ATGAGTTATAATTATTTAAAAGTAATCTTTTACTTATAAAAAATGAATAATT
1 ATGAGTTATAATTATTTAAAAGTAATCTTTTACTTATAAAAAATGAATAATT
22064943 A
1 A
22064944 CATTTATGGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.47, C:0.04, G:0.08, T:0.42
Consensus pattern (52 bp):
ATGAGTTATAATTATTTAAAAGTAATCTTTTACTTATAAAAAATGAATAATT
Found at i:22066288 original size:17 final size:19
Alignment explanation
Indices: 22066248--22066288 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
22066238 TTTCCTTTTC
* *
22066248 ATCTTTTTGTTTTTTTCTT
1 ATCTTTTTGTTTTCTCCTT
22066267 ATCTTTTT-TTTTCTCCTT
1 ATCTTTTTGTTTTCTCCTT
22066285 -TCTT
1 ATCTT
22066289 CACCCTTCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 4 0.20
18 8 0.40
19 8 0.40
ACGTcount: A:0.05, C:0.17, G:0.02, T:0.76
Consensus pattern (19 bp):
ATCTTTTTGTTTTCTCCTT
Found at i:22081884 original size:19 final size:21
Alignment explanation
Indices: 22081840--22081890 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
22081830 AATACCCCTA
*
22081840 AAAATAAACAAACATATAAAT
1 AAAATAAATAAACATATAAAT
*
22081861 AAAATAAATAAACTTA-AAAT
1 AAAATAAATAAACATATAAAT
22081881 -AAATAAATAA
1 AAAATAAATAA
22081891 TACCAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 10 0.36
20 4 0.14
21 14 0.50
ACGTcount: A:0.73, C:0.06, G:0.00, T:0.22
Consensus pattern (21 bp):
AAAATAAATAAACATATAAAT
Found at i:22082787 original size:4 final size:4
Alignment explanation
Indices: 22082778--22082864 Score: 54
Period size: 4 Copynumber: 21.0 Consensus size: 4
22082768 AAAACAAATC
* * *
22082778 TAAA TAAA TAAA TAAA TCAT TAAA TAAA TAAAA CTAAAA AAAA TAAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA T-AAA -T-AAA TAAA T-AAA
* *
22082826 TAAAA GTAAA TAAA TAAA -AAA -CAA TAAA TGAA -AAA TAAA
1 T-AAA -TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
22082865 AACTGTAAAA
Statistics
Matches: 67, Mismatches: 10, Indels: 12
0.75 0.11 0.13
Matches are distributed among these distances:
3 7 0.10
4 40 0.60
5 14 0.21
6 6 0.09
ACGTcount: A:0.74, C:0.03, G:0.02, T:0.21
Consensus pattern (4 bp):
TAAA
Found at i:22082829 original size:14 final size:14
Alignment explanation
Indices: 22082803--22082853 Score: 59
Period size: 14 Copynumber: 3.5 Consensus size: 14
22082793 ATCATTAAAT
22082803 AAATAAAACTAAAAA
1 AAATAAAA-TAAAAA
*
22082818 AAATAAAATAAAAGT
1 AAATAAAATAAAA-A
22082833 AAAT-AAATAAAAA
1 AAATAAAATAAAAA
22082846 ACAATAAA
1 A-AATAAA
22082854 TGAAAAATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 1 0.03
14 16 0.52
15 14 0.45
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.16
Consensus pattern (14 bp):
AAATAAAATAAAAA
Found at i:22082836 original size:10 final size:10
Alignment explanation
Indices: 22082799--22082864 Score: 59
Period size: 10 Copynumber: 6.7 Consensus size: 10
22082789 ATAAATCATT
22082799 AAATAAATAA
1 AAATAAATAA
*
22082809 AACTAAA-AA
1 AAATAAATAA
22082818 AAATAAAATAA
1 AAAT-AAATAA
*
22082829 AAGTAAAT--
1 AAATAAATAA
22082837 AAATAAA-AA
1 AAATAAATAA
22082846 ACAATAAATGAA
1 A-AATAAAT-AA
22082858 AAATAAA
1 AAATAAA
22082865 AACTGTAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
8 6 0.13
9 6 0.13
10 19 0.42
11 11 0.24
12 3 0.07
ACGTcount: A:0.77, C:0.03, G:0.03, T:0.17
Consensus pattern (10 bp):
AAATAAATAA
Found at i:22082854 original size:14 final size:13
Alignment explanation
Indices: 22082812--22082860 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 13
22082802 TAAATAAAAC
22082812 TAAAAAAAATAAAA
1 TAAAAAAAAT-AAA
*
22082826 TAAAAGTAAATAAA
1 TAAAA-AAAATAAA
22082840 TAAAAAACAATAAA
1 TAAAAAA-AATAAA
22082854 TGAAAAA
1 T-AAAAA
22082861 TAAAAACTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
13 1 0.03
14 20 0.67
15 9 0.30
ACGTcount: A:0.78, C:0.02, G:0.04, T:0.16
Consensus pattern (13 bp):
TAAAAAAAATAAA
Found at i:22085527 original size:3 final size:3
Alignment explanation
Indices: 22085519--22085675 Score: 73
Period size: 3 Copynumber: 52.7 Consensus size: 3
22085509 ATTTATTTAT
* * * * * * * *
22085519 TTA TTA TTA TTA TTA CTA TTA TTA TTA TTG TTG TTG TTA ATG TTG TTG
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * * * * * *
22085567 TTG TTG TTG TTA TTG TTG TTG TTG TTG TTG TTA TTG TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
** * ** ** *
22085615 TTA TTA TTA TTA TT- TTA AAA CTA AAA TTA AAA TTA TTA TTG TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
22085662 TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TT
22085676 TTAAAACTAA
Statistics
Matches: 127, Mismatches: 26, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
2 2 0.02
3 125 0.98
ACGTcount: A:0.26, C:0.01, G:0.11, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:22085572 original size:21 final size:21
Alignment explanation
Indices: 22085546--22085604 Score: 109
Period size: 21 Copynumber: 2.8 Consensus size: 21
22085536 ATTATTATTA
*
22085546 TTGTTGTTGTTAATGTTGTTG
1 TTGTTGTTGTTATTGTTGTTG
22085567 TTGTTGTTGTTATTGTTGTTG
1 TTGTTGTTGTTATTGTTGTTG
22085588 TTGTTGTTGTTATTGTT
1 TTGTTGTTGTTATTGTT
22085605 ATTATTATTA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.07, C:0.00, G:0.27, T:0.66
Consensus pattern (21 bp):
TTGTTGTTGTTATTGTTGTTG
Found at i:22085672 original size:47 final size:47
Alignment explanation
Indices: 22085603--22085696 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
22085593 GTTGTTATTG
22085603 TTATTATTATTATTATTATTATTATTTTAAAACTAAAATTAAAATTA
1 TTATTATTATTATTATTATTATTATTTTAAAACTAAAATTAAAATTA
*
22085650 TTATTGTTATTATTATTATTATTATTTTAAAACTAAAATTAAAATTA
1 TTATTATTATTATTATTATTATTATTTTAAAACTAAAATTAAAATTA
22085697 AGTTAAGATT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.44, C:0.02, G:0.01, T:0.53
Consensus pattern (47 bp):
TTATTATTATTATTATTATTATTATTTTAAAACTAAAATTAAAATTA
Found at i:22088227 original size:132 final size:132
Alignment explanation
Indices: 22087950--22088228 Score: 366
Period size: 132 Copynumber: 2.1 Consensus size: 132
22087940 GAACAAACTT
* * * * * * *
22087950 TATGCTTTATATTTTAAAATTTCATTTACTATAGAATTTCATCTAAAAGAAATTGTCTGGACCTA
1 TATGATTTATATTATAAAAATGCATTTACTATAGAATTCCATCTAAAAGAAACTGTCTAGACCTA
* * * * * *
22088015 TCTCATTTTAAAATAAACAAAAAAAGGCAAAGGATCATGGCCCCTACATCTTGTCTTTTGATGTT
66 TCTCATCTTAAAACAAACAAAAAAAGGCAAAGAATCATGGCCCCTACATCATGGCCTTTGATGTT
22088080 TA
131 TA
22088082 TATGATTTATATTATAAAAATGCATTTACTATAGAATTCCTAT-TAAAAGAAACTGTCTAGACCT
1 TATGATTTATATTATAAAAATGCATTTACTATAGAATTCC-ATCTAAAAGAAACTGTCTAGACCT
* * *
22088146 ATCTCATCTTAAAACAAACAAAATGAAGGCAATGAATCATGGTCCCC-ACGTCATGGCCTTTGAT
65 ATCTCATCTTAAAACAAACAAAA-AAAGGCAAAGAATCATGG-CCCCTACATCATGGCCTTTGAT
22088210 GTTTA
128 GTTTA
22088215 TATGATTT-TATTAT
1 TATGATTTATATTAT
22088229 CATGTTTGTG
Statistics
Matches: 128, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
132 81 0.63
133 43 0.34
134 4 0.03
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (132 bp):
TATGATTTATATTATAAAAATGCATTTACTATAGAATTCCATCTAAAAGAAACTGTCTAGACCTA
TCTCATCTTAAAACAAACAAAAAAAGGCAAAGAATCATGGCCCCTACATCATGGCCTTTGATGTT
TA
Found at i:22089460 original size:22 final size:22
Alignment explanation
Indices: 22089416--22089463 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
22089406 CCTAGGGAGT
* * *
22089416 CATCTAGTCTAACTTGTGGGGC
1 CATCTAGTCTAACCTATGAGGC
*
22089438 CATCTAGTCTAACCTATTAGGC
1 CATCTAGTCTAACCTATGAGGC
22089460 CATC
1 CATC
22089464 CAATCTGGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (22 bp):
CATCTAGTCTAACCTATGAGGC
Found at i:22089534 original size:31 final size:32
Alignment explanation
Indices: 22089496--22089562 Score: 127
Period size: 31 Copynumber: 2.1 Consensus size: 32
22089486 TTAAAGGAGG
22089496 ATAAAGGTAACTTTTTAC-AAAAAAATCTAGA
1 ATAAAGGTAACTTTTTACAAAAAAAATCTAGA
22089527 ATAAAGGTAACTTTTTACAAAAAAAATCTAGA
1 ATAAAGGTAACTTTTTACAAAAAAAATCTAGA
22089559 ATAA
1 ATAA
22089563 GGAAAATGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 18 0.51
32 17 0.49
ACGTcount: A:0.54, C:0.09, G:0.09, T:0.28
Consensus pattern (32 bp):
ATAAAGGTAACTTTTTACAAAAAAAATCTAGA
Found at i:22091058 original size:6 final size:6
Alignment explanation
Indices: 22091005--22091060 Score: 58
Period size: 6 Copynumber: 9.3 Consensus size: 6
22090995 GATGAGATTG
* * * * * *
22091005 AGGTCG AGGTCG AGGTCG AGATCG AGGTTA AGGTCA AGGTCA AGGTCA
1 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
22091053 AGGTCA AG
1 AGGTCA AG
22091061 CTTTGGGAGA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.29, C:0.14, G:0.39, T:0.18
Consensus pattern (6 bp):
AGGTCA
Found at i:22097865 original size:6 final size:6
Alignment explanation
Indices: 22097856--22097895 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
22097846 AGAGGGAGAG
* *
22097856 GATGAA GATGAA GATGAA AATGAA TATGAA GATGAA GATG
1 GATGAA GATGAA GATGAA GATGAA GATGAA GATGAA GATG
22097896 GAACATTGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.50, C:0.00, G:0.30, T:0.20
Consensus pattern (6 bp):
GATGAA
Found at i:22103985 original size:27 final size:28
Alignment explanation
Indices: 22103934--22103986 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
22103924 TCATTCATAT
22103934 ATTTTTTAAGGAAAATTTAATGATTACG
1 ATTTTTTAAGGAAAATTTAATGATTACG
* * *
22103962 ATTTTTTCATGAAAGTTTAA-GATTA
1 ATTTTTTAAGGAAAATTTAATGATTA
22103987 ACTGTTATAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 5 0.23
28 17 0.77
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.45
Consensus pattern (28 bp):
ATTTTTTAAGGAAAATTTAATGATTACG
Found at i:22104356 original size:20 final size:21
Alignment explanation
Indices: 22104331--22104369 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
22104321 ATTATTTCTC
22104331 TTAAA-TACATAAAATTATCT
1 TTAAATTACATAAAATTATCT
*
22104351 TTAAATTACATAAATTTAT
1 TTAAATTACATAAAATTAT
22104370 AACTGTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.44
Consensus pattern (21 bp):
TTAAATTACATAAAATTATCT
Found at i:22104912 original size:1 final size:1
Alignment explanation
Indices: 22104906--22104931 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
22104896 TTTGTTTTGG
22104906 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
22104932 GAAAAAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:22108042 original size:2 final size:2
Alignment explanation
Indices: 22108035--22108064 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
22108025 TTATATTTAC
22108035 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22108065 GTCTGCTTCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22108738 original size:29 final size:29
Alignment explanation
Indices: 22108706--22108762 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
22108696 TATGCACTCG
* *
22108706 AATAAATTTTTAATTTTTAATTTGTATTA
1 AATAAATTTTTAAATTTTAATTTATATTA
22108735 AATAAATTTTTAAATTTTAATTTATATT
1 AATAAATTTTTAAATTTTAATTTATATT
22108763 TAATGTTTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (29 bp):
AATAAATTTTTAAATTTTAATTTATATTA
Found at i:22111660 original size:15 final size:13
Alignment explanation
Indices: 22111634--22111680 Score: 60
Period size: 14 Copynumber: 3.5 Consensus size: 13
22111624 AGGTTCGATT
22111634 AATT-TTAAATTA
1 AATTATTAAATTA
22111646 AATTATTAAAAATTA
1 AATTATT--AAATTA
22111661 AATTAATTAAATTA
1 AATT-ATTAAATTA
22111675 AATTAT
1 AATTAT
22111681 AATAGTTCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
12 4 0.13
13 4 0.13
14 10 0.32
15 10 0.32
16 3 0.10
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
AATTATTAAATTA
Found at i:22114786 original size:60 final size:58
Alignment explanation
Indices: 22114711--22114892 Score: 253
Period size: 60 Copynumber: 3.1 Consensus size: 58
22114701 TTTTCAATGA
*
22114711 TTTTCTTAAAATAAAATTTTTAAAAAATATATTTTTAAGAAAAAGTTGAAAGTATCAAT
1 TTTTCTTAAAATAAAA-TTTAAAAAAATATATTTTTAAGAAAAAGTTGAAAGTATCAAT
*
22114770 TTTTCTTGAAAATAAAATTTAAAAAATATATATTTTTAAGGAAAAA-TTAAAAGTATCAA-
1 TTTTCTT-AAAATAAAATTTAAAAAA-ATATATTTTTAA-GAAAAAGTTGAAAGTATCAAT
* * * *
22114829 TTTT-TAAAAAAAAAAATTAAAAAAATATATTTTTAAGTAAAAGTTGAAAGTATCAAT
1 TTTTCTTAAAATAAAATTTAAAAAAATATATTTTTAAGAAAAAGTTGAAAGTATCAAT
22114886 TTTTCTT
1 TTTTCTT
22114893 GTATAAAAGT
Statistics
Matches: 109, Mismatches: 8, Indels: 13
0.84 0.06 0.10
Matches are distributed among these distances:
55 5 0.05
56 24 0.22
57 20 0.18
58 2 0.02
59 19 0.17
60 33 0.30
61 6 0.06
ACGTcount: A:0.51, C:0.03, G:0.07, T:0.40
Consensus pattern (58 bp):
TTTTCTTAAAATAAAATTTAAAAAAATATATTTTTAAGAAAAAGTTGAAAGTATCAAT
Found at i:22114860 original size:29 final size:29
Alignment explanation
Indices: 22114778--22114864 Score: 81
Period size: 29 Copynumber: 3.0 Consensus size: 29
22114768 ATTTTTCTTG
* *
22114778 AAAATAAAATTTAAAAAATATATATTTTT-
1 AAAAAAAAAATTAAAAAA-ATATATTTTTA
** **
22114807 -AAGGAAAAATTAAAAGTATCA-ATTTTTA
1 AAAAAAAAAATTAAAAAAAT-ATATTTTTA
22114835 AAAAAAAAAATTAAAAAAATATATTTTTA
1 AAAAAAAAAATTAAAAAAATATATTTTTA
22114864 A
1 A
22114865 GTAAAAGTTG
Statistics
Matches: 45, Mismatches: 9, Indels: 8
0.73 0.15 0.13
Matches are distributed among these distances:
27 8 0.18
28 14 0.31
29 23 0.51
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.34
Consensus pattern (29 bp):
AAAAAAAAAATTAAAAAAATATATTTTTA
Found at i:22114870 original size:29 final size:28
Alignment explanation
Indices: 22114783--22114870 Score: 81
Period size: 28 Copynumber: 3.1 Consensus size: 28
22114773 TCTTGAAAAT
* *
22114783 AAAATTTAAAAAATATATATTTTTAAG-G
1 AAAAATTAAAAAA-ATATATTTTTAAGAA
** *
22114811 AAAAATTAAAAGTATCA-ATTTTTAAAAAA
1 AAAAATTAAAAAAAT-ATATTTTT-AAGAA
*
22114840 AAAAATTAAAAAAATATATTTTTAAGTA
1 AAAAATTAAAAAAATATATTTTTAAGAA
22114868 AAA
1 AAA
22114871 GTTGAAAGTA
Statistics
Matches: 47, Mismatches: 9, Indels: 8
0.73 0.14 0.12
Matches are distributed among these distances:
27 8 0.17
28 20 0.43
29 19 0.40
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (28 bp):
AAAAATTAAAAAAATATATTTTTAAGAA
Found at i:22114879 original size:56 final size:56
Alignment explanation
Indices: 22114732--22114889 Score: 219
Period size: 56 Copynumber: 2.8 Consensus size: 56
22114722 TAAAATTTTT
* * *
22114732 AAAAAATATATTTTTAAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAATTTA
1 AAAAAATATATTTTTAAGAAAAAGTTGAAAGTATCAA--TTT-TTAAAAAAAAAAATTA
*
22114791 AAAAATATATATTTTTAAGGAAAAA-TTAAAAGTATCAATTTTTAAAAAAAAAAATTA
1 AAAAA-ATATATTTTTAA-GAAAAAGTTGAAAGTATCAATTTTTAAAAAAAAAAATTA
*
22114848 AAAAAATATATTTTTAAGTAAAAGTTGAAAGTATCAATTTTT
1 AAAAAATATATTTTTAAGAAAAAGTTGAAAGTATCAATTTTT
22114890 CTTGTATAAA
Statistics
Matches: 90, Mismatches: 6, Indels: 9
0.86 0.06 0.09
Matches are distributed among these distances:
55 5 0.06
56 29 0.32
57 18 0.20
58 3 0.03
59 5 0.06
60 24 0.27
61 6 0.07
ACGTcount: A:0.53, C:0.03, G:0.08, T:0.37
Consensus pattern (56 bp):
AAAAAATATATTTTTAAGAAAAAGTTGAAAGTATCAATTTTTAAAAAAAAAAATTA
Found at i:22118874 original size:26 final size:25
Alignment explanation
Indices: 22118845--22118893 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
22118835 AAAAAAGGGG
22118845 TGAACGAATAAAAAAAAGAAAAAAAA
1 TGAACGAA-AAAAAAAAGAAAAAAAA
* **
22118871 TGAATGAAAAAAAATGGAAAAAA
1 TGAACGAAAAAAAAAAGAAAAAA
22118894 TGGAAAAGAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 13 0.65
26 7 0.35
ACGTcount: A:0.73, C:0.02, G:0.14, T:0.10
Consensus pattern (25 bp):
TGAACGAAAAAAAAAAGAAAAAAAA
Found at i:22118910 original size:19 final size:19
Alignment explanation
Indices: 22118887--22118932 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
22118877 AAAAAAAATG
22118887 GAAAAAATGG-AAAAGAGAA
1 GAAAAAA-GGAAAAAGAGAA
22118906 -AAAAAAGGAAAAAAGAGAAA
1 GAAAAAAGG-AAAAAGAG-AA
22118926 GAAAAAA
1 GAAAAAA
22118933 AAGAAAAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
17 2 0.09
18 6 0.26
19 7 0.30
20 2 0.09
21 6 0.26
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (19 bp):
GAAAAAAGGAAAAAGAGAA
Found at i:22118931 original size:13 final size:13
Alignment explanation
Indices: 22118854--22118938 Score: 54
Period size: 14 Copynumber: 6.7 Consensus size: 13
22118844 GTGAACGAAT
22118854 AAAAA-AAAGAAA
1 AAAAAGAAAGAAA
*
22118866 AAAAATGAATGAAA
1 AAAAA-GAAAGAAA
22118880 AAAAATG---GAAA
1 AAAAA-GAAAGAAA
** *
22118891 AAATGGAAAAGAGA
1 AAAAAG-AAAGAAA
*
22118905 AAAAA-AAGGAAA
1 AAAAAGAAAGAAA
*
22118917 AAAGAGAAAGAAA
1 AAAAAGAAAGAAA
22118930 AAAAAGAAA
1 AAAAAGAAA
22118939 AATGAAAATG
Statistics
Matches: 55, Mismatches: 11, Indels: 13
0.70 0.14 0.16
Matches are distributed among these distances:
10 1 0.02
11 7 0.13
12 14 0.25
13 14 0.25
14 19 0.35
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.05
Consensus pattern (13 bp):
AAAAAGAAAGAAA
Found at i:22118934 original size:15 final size:16
Alignment explanation
Indices: 22118914--22118946 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
22118904 AAAAAAAAGG
*
22118914 AAAAAAGAGAAA-GAA
1 AAAAAAGAAAAATGAA
22118929 AAAAAAGAAAAATGAA
1 AAAAAAGAAAAATGAA
22118945 AA
1 AA
22118947 TGAGAGAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (16 bp):
AAAAAAGAAAAATGAA
Found at i:22118954 original size:26 final size:23
Alignment explanation
Indices: 22118854--22118956 Score: 75
Period size: 23 Copynumber: 4.2 Consensus size: 23
22118844 GTGAACGAAT
*
22118854 AAAAAAAAGAAAAAAAATGA-ATG
1 AAAAAAAAGAAAAAAAAAGAGA-G
22118877 AAAAAAAATGGAAAAAATGGAAA-AGAG
1 AAAAAAAA--GAAAAAA---AAAGAGAG
* * *
22118904 AAAAAAAAGGAAAAAAGAGAAAG
1 AAAAAAAAGAAAAAAAAAGAGAG
22118927 AAAAAAAAGAAAAATGAAAATGAGAG
1 AAAAAAAAGAAAAA--AAAA-GAGAG
22118953 AAAA
1 AAAA
22118957 GGAAGACTCA
Statistics
Matches: 63, Mismatches: 7, Indels: 17
0.72 0.08 0.20
Matches are distributed among these distances:
22 2 0.03
23 24 0.38
25 16 0.25
26 8 0.13
27 10 0.16
28 3 0.05
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.06
Consensus pattern (23 bp):
AAAAAAAAGAAAAAAAAAGAGAG
Found at i:22119634 original size:23 final size:23
Alignment explanation
Indices: 22119607--22119657 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
22119597 TGAATGGTAG
*
22119607 TGAAAATAGTATGGGTTAATGGA
1 TGAAAATAGTATAGGTTAATGGA
22119630 TGAAAATAGTATAGGTTAATGGA
1 TGAAAATAGTATAGGTTAATGGA
22119653 TGAAA
1 TGAAA
22119658 TTTATGCTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.43, C:0.00, G:0.27, T:0.29
Consensus pattern (23 bp):
TGAAAATAGTATAGGTTAATGGA
Found at i:22120138 original size:21 final size:22
Alignment explanation
Indices: 22120088--22120144 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
22120078 GAATCTTTTG
* *
22120088 ATGAGAATTTTTGAGTTCTCAA
1 ATGAGAATATTTGAATTCTCAA
* * *
22120110 AAGAGAATCTTTGAATT-TTAA
1 ATGAGAATATTTGAATTCTCAA
22120131 ATGAGAATATTTGA
1 ATGAGAATATTTGA
22120145 GGTGTGAAAC
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
21 15 0.52
22 14 0.48
ACGTcount: A:0.39, C:0.05, G:0.18, T:0.39
Consensus pattern (22 bp):
ATGAGAATATTTGAATTCTCAA
Found at i:22120209 original size:58 final size:61
Alignment explanation
Indices: 22120129--22120263 Score: 168
Period size: 63 Copynumber: 2.2 Consensus size: 61
22120119 TTTGAATTTT
* * * * *
22120129 AAATGAGAATATTTGA-G-GTG-TGAAACCCAAAATTTGTCAAATGTGAGTTTTCGAACTC
1 AAATGAGAATCTTTAAGGTGTGATGAAACCCAAAATTTGTCAAATGTAAATCTTCGAACTC
* *
22120187 AAATGGGAATCTTTAAGGTGTGAAATGAAACCCAAAATTTGTCGAATGTAAATCTTCGAACTC
1 AAATGAGAATCTTTAAGGTGTG--ATGAAACCCAAAATTTGTCAAATGTAAATCTTCGAACTC
22120250 AAATGAGAATCTTT
1 AAATGAGAATCTTT
22120264 GAGTCTCAAA
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
58 13 0.20
59 1 0.02
60 3 0.05
63 47 0.73
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (61 bp):
AAATGAGAATCTTTAAGGTGTGATGAAACCCAAAATTTGTCAAATGTAAATCTTCGAACTC
Found at i:22120260 original size:20 final size:21
Alignment explanation
Indices: 22120237--22120288 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
22120227 GTCGAATGTA
22120237 AATCTTCGA-ACTCAAATGAG
1 AATCTTCGAGACTCAAATGAG
* *
22120257 AATCTTTGAGTCTCAAATGAG
1 AATCTTCGAGACTCAAATGAG
* *
22120278 AAACTTTGAGA
1 AATCTTCGAGA
22120289 TGTGAAACTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 8 0.30
21 19 0.70
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.29
Consensus pattern (21 bp):
AATCTTCGAGACTCAAATGAG
Found at i:22120273 original size:21 final size:21
Alignment explanation
Indices: 22120247--22120287 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
22120237 AATCTTCGAA
*
22120247 CTCAAATGAGAATCTTTGAGT
1 CTCAAATGAGAAACTTTGAGT
22120268 CTCAAATGAGAAACTTTGAG
1 CTCAAATGAGAAACTTTGAG
22120288 ATGTGAAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.29
Consensus pattern (21 bp):
CTCAAATGAGAAACTTTGAGT
Found at i:22120643 original size:42 final size:42
Alignment explanation
Indices: 22120576--22121303 Score: 741
Period size: 42 Copynumber: 17.4 Consensus size: 42
22120566 AAGAAGTATT
* * *
22120576 TTTATTTTCCAAAGTTGTGG-TGCCTCTGTTTATAAGAGTAA
1 TTTATTTTTCAAAGTTGTGGTTGCCTCTGTTTAGAAGAGCAA
* *
22120617 TTTATTTTTCAAAGTTGTGGTTGCCTCTATTTA-AAGGAGTAA
1 TTTATTTTTCAAAGTTGTGGTTGCCTCTGTTTAGAA-GAGCAA
*
22120659 TTTATTTTTCAAAGTTGTGGTTGCCTCTGTTTA-AAGGAGCAT
1 TTTATTTTTCAAAGTTGTGGTTGCCTCTGTTTAGAA-GAGCAA
* * **
22120701 TTTATTTTCCAAAGTTGTGGTTGCCTTTGTTTAGGGGAGCAA
1 TTTATTTTTCAAAGTTGTGGTTGCCTCTGTTTAGAAGAGCAA
* * *
22120743 TTTATTTTTTCCAAAGTCGTGG-TGCCTTTGTTTAGAGGAGCAA
1 TTTA-TTTTT-CAAAGTTGTGGTTGCCTCTGTTTAGAAGAGCAA
*
22120786 TTTATTTTTCCAAAGTTGT-GTTGCCTCTGTTTAGAGGAGCAA
1 TTTATTTTT-CAAAGTTGTGGTTGCCTCTGTTTAGAAGAGCAA
* * *
22120828 TTTATTTTCCAAAGTTGTGGTTGTCTCTATTTAG-AGAGCAA
1 TTTATTTTTCAAAGTTGTGGTTGCCTCTGTTTAGAAGAGCAA
* * *
22120869 TTTATTTTTTCAAAATTGT-GTTGCCTCTATTTAGAGGAGCAA
1 TTTA-TTTTTCAAAGTTGTGGTTGCCTCTGTTTAGAAGAGCAA
* *
22120911 TTTATTTTTCAAAGTTATGGTTGCCTCTATTTAGAGAAGAGCAA
1 TTTATTTTTCAAAGTTGTGGTTGCCTCTGTTT--AGAAGAGCAA
* * * * *
22120955 TTTATTTTCCAAGGTTGT-GATGCCTCTGTTTAGAGGAGTAA
1 TTTATTTTTCAAAGTTGTGGTTGCCTCTGTTTAGAAGAGCAA
** *
22120996 TTTATTTTTCAAAGTTACGGTTGCCTCTATTTAG-AGAAGCAA
1 TTTATTTTTCAAAGTTGTGGTTGCCTCTGTTTAGAAG-AGCAA
* * * *
22121038 TTTATTTTCCAAAGTTATGG-TGCCTCTGTTTAGAAAAGCAT
1 TTTATTTTTCAAAGTTGTGGTTGCCTCTGTTTAGAAGAGCAA
* * *
22121079 TTTATTTTCCAAAGTTGTGGTTGCCTCTGTTTAGGAGAGTAA
1 TTTATTTTTCAAAGTTGTGGTTGCCTCTGTTTAGAAGAGCAA
* *
22121121 TTTATTTTTTTCAAAGTTGTGG-TGCCTTTGTTTAGAGGAG-AA
1 TTTA--TTTTTCAAAGTTGTGGTTGCCTCTGTTTAGAAGAGCAA
* * * *
22121163 TTTATTTTCCAAAGTTGTGGTTACCTCTATTTAGAGGAGCAA
1 TTTATTTTTCAAAGTTGTGGTTGCCTCTGTTTAGAAGAGCAA
* * * *
22121205 TTTA-TTTTCTAAAATTGTGG-TGCCTCTGTTTATATGAGCATT
1 TTTATTTTTC-AAAGTTGTGGTTGCCTCTGTTTAGAAGAGCA-A
* * * * *
22121247 TTTATATTTCAAAAGCTGTGG-TGCCTTTATTTAGAGGAGC-A
1 TTTATTTTTC-AAAGTTGTGGTTGCCTCTGTTTAGAAGAGCAA
22121288 TTTATTTTTCCAAAGT
1 TTTATTTTT-CAAAGT
22121304 CGTTAAGCCT
Statistics
Matches: 586, Mismatches: 77, Indels: 48
0.82 0.11 0.07
Matches are distributed among these distances:
40 15 0.03
41 172 0.29
42 269 0.46
43 81 0.14
44 49 0.08
ACGTcount: A:0.24, C:0.12, G:0.20, T:0.44
Consensus pattern (42 bp):
TTTATTTTTCAAAGTTGTGGTTGCCTCTGTTTAGAAGAGCAA
Found at i:22120888 original size:83 final size:83
Alignment explanation
Indices: 22120576--22121327 Score: 815
Period size: 83 Copynumber: 9.0 Consensus size: 83
22120566 AAGAAGTATT
* * *
22120576 TTTATTTTCCAAAGTTGTGG-TGCCTCTGTTTATAAGAGTAATTTATTTTT-CAAAGTTGTGGTT
1 TTTATTTTCCAAAGTTGTGGTTGCCTCTATTTA-GAGAGCAATTTATTTTTCCAAAGTTGT-GTT
* * *
22120639 GCCTCTATTTAAAGGAGTAA
64 GCCTCTGTTTAGAGGAGCAA
* * * *
22120659 TTTATTTTTCAAAGTTGTGGTTGCCTCTGTTTAAAGGAGCATTTTA-TTTTCCAAAGTTGTGGTT
1 TTTATTTTCCAAAGTTGTGGTTGCCTCTATTTAGA-GAGCAATTTATTTTTCCAAAGTTGT-GTT
* *
22120723 GCCTTTGTTTAGGGGAGCAA
64 GCCTCTGTTTAGAGGAGCAA
* * *
22120743 TTTATTTTTTCCAAAGTCGTGG-TGCCTTTGTTTAGAGGAGCAATTTATTTTTCCAAAGTTGTGT
1 TTTA--TTTTCCAAAGTTGTGGTTGCCTCTATTTAGA-GAGCAATTTATTTTTCCAAAGTTGTGT
22120807 TGCCTCTGTTTAGAGGAGCAA
63 TGCCTCTGTTTAGAGGAGCAA
* * *
22120828 TTTATTTTCCAAAGTTGTGGTTGTCTCTATTTAGAGAGCAATTTATTTTTTCAAAATTGTGTTGC
1 TTTATTTTCCAAAGTTGTGGTTGCCTCTATTTAGAGAGCAATTTATTTTTCCAAAGTTGTGTTGC
*
22120893 CTCTATTTAGAGGAGCAA
66 CTCTGTTTAGAGGAGCAA
* * * *
22120911 TTTATTTTTCAAAGTTATGGTTGCCTCTATTTAGAGAAGAGCAATTTA-TTTTCCAAGGTTGTGA
1 TTTATTTTCCAAAGTTGTGGTTGCCTCTATTT--AG-AGAGCAATTTATTTTTCCAAAGTTGTGT
*
22120975 TGCCTCTGTTTAGAGGAGTAA
63 TGCCTCTGTTTAGAGGAGCAA
* ** * *
22120996 TTTATTTTTCAAAGTTACGGTTGCCTCTATTTAGAGAAGCAATTTA-TTTTCCAAAGTTATGGTG
1 TTTATTTTCCAAAGTTGTGGTTGCCTCTATTTAGAG-AGCAATTTATTTTTCCAAAGTTGTGTTG
** *
22121060 CCTCTGTTTAGAAAAGCAT
65 CCTCTGTTTAGAGGAGCAA
* * * *
22121079 TTTATTTTCCAAAGTTGTGGTTGCCTCTGTTTAGGAGAGTAATTTATTTTTTTCAAAGTTGTGGT
1 TTTATTTTCCAAAGTTGTGGTTGCCTCTATTTA-GAGAGCAATTTA-TTTTTCCAAAGTTGTGTT
*
22121144 GCCTTTGTTTAGAGGAG-AA
64 GCCTCTGTTTAGAGGAGCAA
* * * *
22121163 TTTATTTTCCAAAGTTGTGGTTACCTCTATTTAGAGGAGCAATTTA-TTTTCTAAAATTGTGGTG
1 TTTATTTTCCAAAGTTGTGGTTGCCTCTATTTAGA-GAGCAATTTATTTTTCCAAAGTTGTGTTG
* * *
22121227 CCTCTGTTTATATGAGCATT
65 CCTCTGTTTAGAGGAGCA-A
* * * *
22121247 TTTATATTTCAAAAGCTGTGG-TGCCTTTATTTAGAGGAGC-ATTTATTTTTCCAAAGTCGT-TA
1 TTTAT-TTTCCAAAGTTGTGGTTGCCTCTATTTAGA-GAGCAATTTATTTTTCCAAAGTTGTGT-
* *
22121309 AGCCTTTGTTTAGAGGAGC
63 TGCCTCTGTTTAGAGGAGC
22121328 TTTGTTTATC
Statistics
Matches: 577, Mismatches: 72, Indels: 39
0.84 0.10 0.06
Matches are distributed among these distances:
82 30 0.05
83 200 0.35
84 155 0.27
85 153 0.27
86 39 0.07
ACGTcount: A:0.24, C:0.12, G:0.20, T:0.43
Consensus pattern (83 bp):
TTTATTTTCCAAAGTTGTGGTTGCCTCTATTTAGAGAGCAATTTATTTTTCCAAAGTTGTGTTGC
CTCTGTTTAGAGGAGCAA
Found at i:22120965 original size:210 final size:207
Alignment explanation
Indices: 22120576--22121303 Score: 865
Period size: 210 Copynumber: 3.5 Consensus size: 207
22120566 AAGAAGTATT
* * * *
22120576 TTTATTTTCCAAAGTTGTGGTGCCTCTGTTTATAAGAGTAATTTATTTTTCAAAGTTGTGGTTGC
1 TTTATTTTCCAAAGTTGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTTGTGG-TGC
* * * * *
22120641 CTCTATTTAAAGGAGTAATTTATTTTTCAAAGTTGTGGTTGCCTCTGTTTAAAGGAGCATTTTAT
65 CTCTATTTAGAGGAGCAATTTATTTTCCAAAGTTGTGGTTGCCTCTGTTTAGAGGAGCAATTTAT
* * * *
22120706 TTTCCAAAGTTGTGGTTGCCTTTGTTTAGGGGAGCAATTTATTTTTTCCAAAGTCGTGGTGCCTT
130 TTTTCAAAGTTGTGGTTGCCTTTGTTTAGAGGAGCAATTTA--TTTTCCAAAGTTGTGGTGCCTC
22120771 TGTTTAGAGGAGCAA
193 TGTTTAGAGGAGCAA
*
22120786 TTTATTTTTCCAAAGTTGTGTTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTTGTGGTTG
1 TTTA-TTTTCCAAAGTTGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTTGTGG-TG
* * * *
22120851 TCTCTATTTAGA-GAGCAATTTATTTTTTCAAAATTGT-GTTGCCTCTATTTAGAGGAGCAATTT
64 CCTCTATTTAGAGGAGCAATTTA-TTTTCCAAAGTTGTGGTTGCCTCTGTTTAGAGGAGCAATTT
* * * * *
22120914 ATTTTTCAAAGTTATGGTTGCCTCTATTTAGAGAAGAGCAATTTATTTTCCAAGGTTGTGATGCC
128 ATTTTTCAAAGTTGTGGTTGCCTTTGTTTAGAG--GAGCAATTTATTTTCCAAAGTTGTGGTGCC
*
22120979 TCTGTTTAGAGGAGTAA
191 TCTGTTTAGAGGAGCAA
* ** * * *
22120996 TTTATTTTTCAAAGTTACGGTTGCCTCTATTTAGAGAAGCAATTTATTTTCCAAAGTTATGGTGC
1 TTTATTTTCCAAAGTTGTGG-TGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTTGTGGTGC
* ** * *
22121061 CTCTGTTTAGAAAAGCATTTTATTTTCCAAAGTTGTGGTTGCCTCTGTTTAG-GAGAGTAATTTA
65 CTCTATTTAGAGGAGCAATTTATTTTCCAAAGTTGTGGTTGCCTCTGTTTAGAG-GAGCAATTTA
*
22121125 TTTTTTTCAAAGTTGTGG-TGCCTTTGTTTAGAGGAG-AATTTATTTTCCAAAGTTGTGGTTACC
129 --TTTTTCAAAGTTGTGGTTGCCTTTGTTTAGAGGAGCAATTTATTTTCCAAAGTTGTGG-TGCC
*
22121188 TCTATTTAGAGGAGCAA
191 TCTGTTTAGAGGAGCAA
* * * * * * *
22121205 TTTATTTTCTAAAATTGTGGTGCCTCTGTTTATATGAGCATTTTTATATTTCAAAAGCTGTGGTG
1 TTTATTTTCCAAAGTTGTGGTGCCTCTGTTTAGAGGAGCA-ATTTAT-TTTCCAAAGTTGTGGTG
*
22121270 CCTTTATTTAGAGGAGC-ATTTATTTTTCCAAAGT
64 CCTCTATTTAGAGGAGCAATTTA-TTTTCCAAAGT
22121304 CGTTAAGCCT
Statistics
Matches: 441, Mismatches: 63, Indels: 28
0.83 0.12 0.05
Matches are distributed among these distances:
208 36 0.08
209 82 0.19
210 207 0.47
211 91 0.21
212 25 0.06
ACGTcount: A:0.24, C:0.12, G:0.20, T:0.44
Consensus pattern (207 bp):
TTTATTTTCCAAAGTTGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTTGTGGTGCC
TCTATTTAGAGGAGCAATTTATTTTCCAAAGTTGTGGTTGCCTCTGTTTAGAGGAGCAATTTATT
TTTCAAAGTTGTGGTTGCCTTTGTTTAGAGGAGCAATTTATTTTCCAAAGTTGTGGTGCCTCTGT
TTAGAGGAGCAA
Found at i:22121617 original size:13 final size:13
Alignment explanation
Indices: 22121599--22121623 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22121589 GTTGAAGAAT
22121599 TAAAACCCAAAAG
1 TAAAACCCAAAAG
22121612 TAAAACCCAAAA
1 TAAAACCCAAAA
22121624 AGGATTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.24, G:0.04, T:0.08
Consensus pattern (13 bp):
TAAAACCCAAAAG
Found at i:22122487 original size:15 final size:14
Alignment explanation
Indices: 22122457--22122498 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
22122447 AATGATTTTC
22122457 TTAAAATAAAATTT
1 TTAAAATAAAATTT
*
22122471 TTAAAATATATATTT
1 TTAAAATA-AAATTT
22122486 TTAAGAA-AAAATT
1 TTAA-AATAAAATT
22122499 AAAAGTATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
14 12 0.50
15 10 0.42
16 2 0.08
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (14 bp):
TTAAAATAAAATTT
Found at i:22122527 original size:60 final size:59
Alignment explanation
Indices: 22122452--22122754 Score: 400
Period size: 59 Copynumber: 5.1 Consensus size: 59
22122442 TTTTCAATGA
* * * * *
22122452 TTTTCTT-AAAATAAAATTTTTAAAATATATATTTTTAAGAAAAAATTAAAAGTATCAAT
1 TTTTCTTGAAAATAAAA-TTTAAAAAAATATATTTTTAAGGAAAAGTTGAAAGTATCAAT
* * * *
22122511 TTTTCTTGAAAATAAAATTAAAAAAAAAACATTTTTAAAGAAAAGTTGAAAGTATCAAT
1 TTTTCTTGAAAATAAAATTTAAAAAAATATATTTTTAAGGAAAAGTTGAAAGTATCAAT
22122570 TTTTCTTGAAAATAAAA-TTAAAAAATATATATTTTTAAGGAAAAGTTGAAAGTATCAAT
1 TTTTCTTGAAAATAAAATTTAAAAAA-ATATATTTTTAAGGAAAAGTTGAAAGTATCAAT
* *
22122629 TTTCCTTGAAAATAAAATTTTCAAAAAAA-ATATTTTTAAGGAAAAGTTGAAAATATCAAT
1 TTTTCTTGAAAATAAAA-TTT-AAAAAAATATATTTTTAAGGAAAAGTTGAAAGTATCAAT
* * *
22122689 TTTTCTTGAGAATAAAAAATT-AAAAAATATATTTTTAAGGAAAAATTGAAAGTATCAA-
1 TTTTCTTGAAAAT-AAAATTTAAAAAAATATATTTTTAAGGAAAAGTTGAAAGTATCAAT
22122747 TTTTCTTG
1 TTTTCTTG
22122755 TATAAAAGCA
Statistics
Matches: 217, Mismatches: 20, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
58 21 0.10
59 131 0.60
60 52 0.24
61 7 0.03
62 6 0.03
ACGTcount: A:0.50, C:0.05, G:0.08, T:0.37
Consensus pattern (59 bp):
TTTTCTTGAAAATAAAATTTAAAAAAATATATTTTTAAGGAAAAGTTGAAAGTATCAAT
Found at i:22122571 original size:27 final size:27
Alignment explanation
Indices: 22122541--22122631 Score: 69
Period size: 27 Copynumber: 3.2 Consensus size: 27
22122531 AAAAAAAAAC
22122541 ATTTTTAAAGAAAAGTTGAAAGTATCA
1 ATTTTTAAAGAAAAGTTGAAAGTATCA
* * *
22122568 ATTTTTCTTGAAA-ATAAAATTAAAAAATAT-A
1 A--TTT-TT-AAAGA-AAAGTT-GAAAGTATCA
*
22122599 TATTTTTAAGGAAAAGTTGAAAGTATCA
1 -ATTTTTAAAGAAAAGTTGAAAGTATCA
22122627 ATTTT
1 ATTTT
22122632 CCTTGAAAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 18
0.66 0.10 0.25
Matches are distributed among these distances:
27 12 0.25
28 8 0.17
29 6 0.12
30 6 0.12
31 9 0.19
32 7 0.15
ACGTcount: A:0.47, C:0.03, G:0.11, T:0.38
Consensus pattern (27 bp):
ATTTTTAAAGAAAAGTTGAAAGTATCA
Found at i:22122686 original size:119 final size:117
Alignment explanation
Indices: 22122452--22122751 Score: 433
Period size: 119 Copynumber: 2.5 Consensus size: 117
22122442 TTTTCAATGA
* * * *
22122452 TTTTCTT-AAAATAAAATTTTTAAAATATATATTTTTAAGAAAAAATTAAAAGTATCAATTTTTC
1 TTTTCTTGAAAATAAAA--TTAAAAATATATATTTTTAAGGAAAAATTGAAAGTATCAATTTTCC
*
22122516 TTGAAAATAAAATTAAAAAAAAAACATTTTTAAAGAAAAGTTGAAAGTATCAAT
64 TTGAAAATAAAATTAAAAAAAAAACATTTTTAAAGAAAAGTTGAAAATATCAAT
*
22122570 TTTTCTTGAAAATAAAATTAAAAAATATATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TTTTCTTGAAAATAAAATT-AAAAATATATATTTTTAAGGAAAAATTGAAAGTATCAATTTTCCT
** * *
22122635 TGAAAATAAAATTTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAAT
65 TGAAAATAAAA-TTAAAAAAAAAACATTTTTAAAGAAAAGTTGAAAATATCAAT
*
22122689 TTTTCTTGAGAATAAAAAATTAAAAA-ATATATTTTTAAGGAAAAATTGAAAGTATCAATTTTC
1 TTTTCTTGA-AA-ATAAAATTAAAAATATATATTTTTAAGGAAAAATTGAAAGTATCAATTTTC
22122752 TTGTATAAAA
Statistics
Matches: 165, Mismatches: 12, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
117 2 0.01
118 58 0.35
119 91 0.55
120 7 0.04
121 7 0.04
ACGTcount: A:0.50, C:0.05, G:0.08, T:0.37
Consensus pattern (117 bp):
TTTTCTTGAAAATAAAATTAAAAATATATATTTTTAAGGAAAAATTGAAAGTATCAATTTTCCTT
GAAAATAAAATTAAAAAAAAAACATTTTTAAAGAAAAGTTGAAAATATCAAT
Found at i:22128925 original size:18 final size:18
Alignment explanation
Indices: 22128902--22128939 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
22128892 AGAAATATTG
*
22128902 GTATGAAAATTTGATGAT
1 GTATGAAAATCTGATGAT
22128920 GTATGAAAATCTGATGAT
1 GTATGAAAATCTGATGAT
22128938 GT
1 GT
22128940 TTTGATATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.37, C:0.03, G:0.24, T:0.37
Consensus pattern (18 bp):
GTATGAAAATCTGATGAT
Found at i:22128958 original size:20 final size:20
Alignment explanation
Indices: 22128933--22128972 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
22128923 TGAAAATCTG
*
22128933 ATGATGTTTTGATATTGATA
1 ATGATGCTTTGATATTGATA
22128953 ATGATGCTTTGATATTGATA
1 ATGATGCTTTGATATTGATA
22128973 GATATATTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.03, G:0.20, T:0.47
Consensus pattern (20 bp):
ATGATGCTTTGATATTGATA
Found at i:22129805 original size:20 final size:20
Alignment explanation
Indices: 22129780--22129822 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
22129770 CCAATTGATC
22129780 CCCTAAGGGAGAGGATCAAT
1 CCCTAAGGGAGAGGATCAAT
* *
22129800 CCCTAAGGGAGGGGATCGAT
1 CCCTAAGGGAGAGGATCAAT
22129820 CCC
1 CCC
22129823 CTGAAGGCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.28, C:0.26, G:0.33, T:0.14
Consensus pattern (20 bp):
CCCTAAGGGAGAGGATCAAT
Found at i:22131258 original size:15 final size:16
Alignment explanation
Indices: 22131227--22131258 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
22131217 TAACTTGACG
22131227 AAAATGCAACAATAAA
1 AAAATGCAACAATAAA
22131243 AAAAT-CAA-AATAAA
1 AAAATGCAACAATAAA
22131257 AA
1 AA
22131259 TAATTCATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 3 0.19
16 5 0.31
ACGTcount: A:0.75, C:0.09, G:0.03, T:0.12
Consensus pattern (16 bp):
AAAATGCAACAATAAA
Found at i:22134245 original size:32 final size:32
Alignment explanation
Indices: 22134208--22134268 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
22134198 ATAATTTATT
22134208 AAATTCTCCAATAGTTTAGT-AGAATTCATAAA
1 AAATTCTCCAATAGTTTAGTAAG-ATTCATAAA
*
22134240 AAATTCTTCAATAGTTTAGTAAGATTCAT
1 AAATTCTCCAATAGTTTAGTAAGATTCAT
22134269 GAATTTATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
32 25 0.93
33 2 0.07
ACGTcount: A:0.41, C:0.11, G:0.10, T:0.38
Consensus pattern (32 bp):
AAATTCTCCAATAGTTTAGTAAGATTCATAAA
Found at i:22134372 original size:9 final size:10
Alignment explanation
Indices: 22134361--22134431 Score: 64
Period size: 9 Copynumber: 7.5 Consensus size: 10
22134351 TTCAATTTAA
22134361 AATAAGTAA-
1 AATAAGTAAT
22134370 AATAA-TAAT
1 AATAAGTAAT
22134379 AAT-AGTAAT
1 AATAAGTAAT
*
22134388 AATAA-TATT
1 AATAAGTAAT
22134397 AATAATAGTAAT
1 AAT-A-AGTAAT
22134409 AATAA-TAAT
1 AATAAGTAAT
*
22134418 AATAGGTAA-
1 AATAAGTAAT
22134427 AATAA
1 AATAA
22134432 AAGAAAATCT
Statistics
Matches: 51, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
8 4 0.08
9 33 0.65
10 6 0.12
11 2 0.04
12 6 0.12
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31
Consensus pattern (10 bp):
AATAAGTAAT
Found at i:22134378 original size:3 final size:3
Alignment explanation
Indices: 22134361--22134421 Score: 79
Period size: 3 Copynumber: 20.3 Consensus size: 3
22134351 TTCAATTTAA
* * *
22134361 AAT AAGT AA- AAT AAT AAT AAT AGT AAT AAT AAT ATT AAT AAT AGT
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
22134406 AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT A
22134422 GGTAAAATAA
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
2 2 0.04
3 45 0.90
4 3 0.06
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:22136665 original size:20 final size:21
Alignment explanation
Indices: 22136628--22136695 Score: 68
Period size: 20 Copynumber: 3.2 Consensus size: 21
22136618 TTATTCATGC
*
22136628 AAACCCATCAAACCCCAAACTT
1 AAACCC-TCAAACGCCAAACTT
* *
22136650 AAACCC-CAAACGCCAAAATC
1 AAACCCTCAAACGCCAAACTT
*
22136670 AAACCCTTAAA-GCCTAAACTT
1 AAACCCTCAAACGCC-AAACTT
22136691 AAACC
1 AAACC
22136696 ATAACCCCAA
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
20 20 0.53
21 12 0.32
22 6 0.16
ACGTcount: A:0.47, C:0.37, G:0.03, T:0.13
Consensus pattern (21 bp):
AAACCCTCAAACGCCAAACTT
Found at i:22136719 original size:26 final size:27
Alignment explanation
Indices: 22136688--22136751 Score: 82
Period size: 26 Copynumber: 2.5 Consensus size: 27
22136678 AAAGCCTAAA
22136688 CTTAAACCA-TAACCCCAAAA-CAAACC
1 CTTAAACCACTAA-CCCAAAACCAAACC
*
22136714 TTTAAA-CACTAACCCAAAACCAAACC
1 CTTAAACCACTAACCCAAAACCAAACC
22136740 CTTAAACC-CTAA
1 CTTAAACCACTAA
22136752 ACTTAAACCC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
25 9 0.27
26 23 0.70
27 1 0.03
ACGTcount: A:0.48, C:0.36, G:0.00, T:0.16
Consensus pattern (27 bp):
CTTAAACCACTAACCCAAAACCAAACC
Found at i:22136746 original size:13 final size:13
Alignment explanation
Indices: 22136669--22136784 Score: 64
Period size: 13 Copynumber: 8.8 Consensus size: 13
22136659 ACGCCAAAAT
22136669 CAAACCCTTAAAGC
1 CAAACCCTTAAA-C
22136683 CTAAA--CTTAAAC
1 C-AAACCCTTAAAC
* *
22136695 CATAACCC-CAAAA
1 CA-AACCCTTAAAC
*
22136708 CAAACCTTTAAAC
1 CAAACCCTTAAAC
* *
22136721 ACTAACCC-AAAAC
1 -CAAACCCTTAAAC
22136734 CAAACCCTTAAACC
1 CAAACCCTTAAA-C
22136748 CTAAA--CTTAAACC
1 C-AAACCCTTAAA-C
*
22136761 CTAAACCCTAAAAC
1 C-AAACCCTTAAAC
22136775 CAAACCCTTA
1 CAAACCCTTA
22136785 TATCCTAAAC
Statistics
Matches: 79, Mismatches: 12, Indels: 23
0.69 0.11 0.20
Matches are distributed among these distances:
11 1 0.01
12 14 0.18
13 42 0.53
14 11 0.14
15 11 0.14
ACGTcount: A:0.47, C:0.35, G:0.01, T:0.16
Consensus pattern (13 bp):
CAAACCCTTAAAC
Found at i:22136752 original size:7 final size:7
Alignment explanation
Indices: 22136735--22136865 Score: 75
Period size: 7 Copynumber: 19.7 Consensus size: 7
22136725 ACCCAAAACC
22136735 AAACCCTT
1 AAACCC-T
22136743 AAACCCT
1 AAACCCT
*
22136750 AAA-CTT
1 AAACCCT
22136756 AAACCCT
1 AAACCCT
22136763 AAACCCT
1 AAACCCT
*
22136770 AAAACC-
1 AAACCCT
22136776 AAACCCTT
1 AAACCC-T
* *
22136784 ATATCCT
1 AAACCCT
*
22136791 AAA-CTT
1 AAACCCT
*
22136797 AAACCCC
1 AAACCCT
22136804 AAACCC-
1 AAACCCT
*
22136810 AAACCTT
1 AAACCCT
*
22136817 CAAAACCT
1 -AAACCCT
*
22136825 AAA-CTT
1 AAACCCT
22136831 AAA-CCT
1 AAACCCT
22136837 AAACCCT
1 AAACCCT
*
22136844 AAAACC-
1 AAACCCT
22136850 AAA-CC-
1 AAACCCT
22136855 -AACCCT
1 AAACCCT
22136861 AAACC
1 AAACC
22136866 AAAACCAACC
Statistics
Matches: 97, Mismatches: 16, Indels: 21
0.72 0.12 0.16
Matches are distributed among these distances:
4 2 0.02
5 4 0.04
6 33 0.34
7 43 0.44
8 15 0.15
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (7 bp):
AAACCCT
Found at i:22136775 original size:41 final size:38
Alignment explanation
Indices: 22136715--22136854 Score: 146
Period size: 41 Copynumber: 3.6 Consensus size: 38
22136705 AAACAAACCT
*
22136715 TTAAACACTAACCCAAAACCAAACCCTTAAACCCTAAAC
1 TTAAAC-CTAACCCAAAACCAAACCCTTAAAACCTAAAC
* *
22136754 TTAAACCCTAAACCCTAAAACCAAACCCTTATATCCTAAAC
1 TTAAA-CCT-AACCC-AAAACCAAACCCTTAAAACCTAAAC
*
22136795 TTAAA-C---CCCAAACCCAAA-CCTTCAAAACCTAAAC
1 TTAAACCTAACCCAAAACCAAACCCTT-AAAACCTAAAC
22136829 TTAAACCTAAACCCTAAAACCAAACC
1 TTAAACCT-AACCC-AAAACCAAACC
22136855 AACCCTAAAC
Statistics
Matches: 84, Mismatches: 6, Indels: 20
0.76 0.05 0.18
Matches are distributed among these distances:
33 4 0.05
34 22 0.26
35 4 0.05
39 11 0.13
40 14 0.17
41 29 0.35
ACGTcount: A:0.47, C:0.36, G:0.00, T:0.17
Consensus pattern (38 bp):
TTAAACCTAACCCAAAACCAAACCCTTAAAACCTAAAC
Found at i:22136794 original size:20 final size:20
Alignment explanation
Indices: 22136724--22136794 Score: 81
Period size: 20 Copynumber: 3.5 Consensus size: 20
22136714 TTTAAACACT
*
22136724 AACCCAAAACCAAACCCTTA
1 AACCCTAAACCAAACCCTTA
*
22136744 AACCCTAAACTTAAACCC-TA
1 AACCCTAAAC-CAAACCCTTA
22136764 AACCCTAAAACCAAACCCTTA
1 AACCCT-AAACCAAACCCTTA
* *
22136785 TATCCTAAAC
1 AACCCTAAAC
22136795 TTAAACCCCA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
20 27 0.63
21 16 0.37
ACGTcount: A:0.46, C:0.37, G:0.00, T:0.17
Consensus pattern (20 bp):
AACCCTAAACCAAACCCTTA
Found at i:22136802 original size:34 final size:34
Alignment explanation
Indices: 22136762--22136839 Score: 97
Period size: 34 Copynumber: 2.3 Consensus size: 34
22136752 ACTTAAACCC
* *
22136762 TAAACCCTAAAACCAAACCCTT-ATATCCTAAACT
1 TAAACCCTAAAACCAAA-CCTTCAAAACCTAAACT
* *
22136796 TAAACCCCAAACCCAAACCTTCAAAACCTAAACT
1 TAAACCCTAAAACCAAACCTTCAAAACCTAAACT
22136830 TAAA-CCTAAA
1 TAAACCCTAAA
22136840 CCCTAAAACC
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
33 9 0.24
34 29 0.76
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.19
Consensus pattern (34 bp):
TAAACCCTAAAACCAAACCTTCAAAACCTAAACT
Found at i:22136807 original size:13 final size:13
Alignment explanation
Indices: 22136740--22136807 Score: 57
Period size: 13 Copynumber: 5.1 Consensus size: 13
22136730 AAACCAAACC
22136740 CTTAAACCCTAAA
1 CTTAAACCCTAAA
22136753 CTTAAACCCTAAA
1 CTTAAACCCTAAA
* *
22136766 CCCTAAAACC-AAA
1 -CTTAAACCCTAAA
* *
22136779 CCCTTATATCCTAAA
1 --CTTAAACCCTAAA
*
22136794 CTTAAACCCCAAA
1 CTTAAACCCTAAA
22136807 C
1 C
22136808 CCAAACCTTC
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
13 27 0.61
14 14 0.32
15 3 0.07
ACGTcount: A:0.44, C:0.35, G:0.00, T:0.21
Consensus pattern (13 bp):
CTTAAACCCTAAA
Found at i:22136860 original size:17 final size:18
Alignment explanation
Indices: 22136838--22136881 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 18
22136828 CTTAAACCTA
22136838 AACCCTAAAACC-AAACC
1 AACCCTAAAACCAAAACC
22136855 AACCCT-AAACCAAAACC
1 AACCCTAAAACCAAAACC
*
22136872 AACCCCAAAA
1 AACCCTAAAA
22136882 TTGAACCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 5 0.21
17 16 0.67
18 3 0.12
ACGTcount: A:0.55, C:0.41, G:0.00, T:0.05
Consensus pattern (18 bp):
AACCCTAAAACCAAAACC
Found at i:22136876 original size:74 final size:74
Alignment explanation
Indices: 22136726--22136881 Score: 185
Period size: 74 Copynumber: 2.1 Consensus size: 74
22136716 TAAACACTAA
* * * *
22136726 CCCAAAACCAAACCCTTAAACCCTAAACTTAAACCCTAAACCCTAAAACCAAACCCTTATATCCT
1 CCCAAAACCAAACCCTTAAAACCTAAACTTAAACCCTAAACCCTAAAACCAAACCCCTATAACCA
22136791 AAACTTAAAC
66 AAAC-TAAAC
*
22136801 CCCAAACCCAAA-CCTTCAAAACCTAAACTTAAA-CCTAAACCCTAAAACCAAACCAACCCTA-A
1 CCCAAAACCAAACCCTT-AAAACCTAAACTTAAACCCTAAACCCTAAAACCAAA-C--CCCTATA
*
22136863 ACCAAAAC-CAAC
62 ACCAAAACTAAAC
22136875 CCCAAAA
1 CCCAAAA
22136882 TTGAACCTAA
Statistics
Matches: 70, Mismatches: 7, Indels: 9
0.81 0.08 0.10
Matches are distributed among these distances:
74 32 0.46
75 27 0.39
76 7 0.10
77 4 0.06
ACGTcount: A:0.48, C:0.38, G:0.00, T:0.14
Consensus pattern (74 bp):
CCCAAAACCAAACCCTTAAAACCTAAACTTAAACCCTAAACCCTAAAACCAAACCCCTATAACCA
AAACTAAAC
Found at i:22137034 original size:18 final size:19
Alignment explanation
Indices: 22137003--22137041 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
22136993 CAAACTCTAG
22137003 ACCAACCCAAAAACC-TAA
1 ACCAACCCAAAAACCTTAA
**
22137021 ACCAACCCTTAAACCTTAA
1 ACCAACCCAAAAACCTTAA
22137040 AC
1 AC
22137042 TCTTCTTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.49, C:0.38, G:0.00, T:0.13
Consensus pattern (19 bp):
ACCAACCCAAAAACCTTAA
Found at i:22137153 original size:24 final size:23
Alignment explanation
Indices: 22137124--22137168 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
22137114 CCCTGAACCA
*
22137124 GACTTAGACCCTAAACCCAAATTG
1 GACTTAAACCCTAAA-CCAAATTG
*
22137148 GACTTAAATCCTAAACCAAAT
1 GACTTAAACCCTAAACCAAAT
22137169 CTTCAAACTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.42, C:0.27, G:0.09, T:0.22
Consensus pattern (23 bp):
GACTTAAACCCTAAACCAAATTG
Found at i:22137225 original size:19 final size:19
Alignment explanation
Indices: 22137188--22137238 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
22137178 CAACCCTTAG
*
22137188 ATCCTAAACTAAA-CCCAA
1 ATCCTAAACCAAACCCCAA
*
22137206 ACTCC-CAACCAAACCCCAA
1 A-TCCTAAACCAAACCCCAA
22137225 ATCCTAAACCAAAC
1 ATCCTAAACCAAAC
22137239 TTAAACCTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
18 10 0.37
19 17 0.63
ACGTcount: A:0.47, C:0.41, G:0.00, T:0.12
Consensus pattern (19 bp):
ATCCTAAACCAAACCCCAA
Found at i:22139922 original size:24 final size:25
Alignment explanation
Indices: 22139893--22139960 Score: 75
Period size: 24 Copynumber: 2.7 Consensus size: 25
22139883 AATGAAAATT
*
22139893 AATTTAAATAAAATGAA-TAAATAA
1 AATTTAAATAAAATAAATTAAATAA
*
22139917 AATTTACATAAAATAAATTAAATAA
1 AATTTAAATAAAATAAATTAAATAA
**
22139942 ATAAATAAATAAAAATAAA
1 A-ATTTAAAT-AAAATAAA
22139961 AATTACCAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
24 15 0.42
25 8 0.22
26 5 0.14
27 8 0.22
ACGTcount: A:0.69, C:0.01, G:0.01, T:0.28
Consensus pattern (25 bp):
AATTTAAATAAAATAAATTAAATAA
Found at i:22141071 original size:17 final size:17
Alignment explanation
Indices: 22141048--22141087 Score: 73
Period size: 16 Copynumber: 2.4 Consensus size: 17
22141038 ATATAGAAAT
22141048 AATAAAAAGTAAA-ATA
1 AATAAAAAGTAAAGATA
22141064 AATAAAAAGTAAAGATA
1 AATAAAAAGTAAAGATA
22141081 AATAAAA
1 AATAAAA
22141088 TGAGATAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 13 0.57
17 10 0.43
ACGTcount: A:0.75, C:0.00, G:0.07, T:0.17
Consensus pattern (17 bp):
AATAAAAAGTAAAGATA
Found at i:22141135 original size:13 final size:13
Alignment explanation
Indices: 22141058--22141149 Score: 55
Period size: 13 Copynumber: 7.0 Consensus size: 13
22141048 AATAAAAAGT
22141058 AAAATAA-AT-AA
1 AAAATAAGATAAA
*
22141069 AAAGTAAAGATAAA
1 AAAAT-AAGATAAA
*
22141083 TAAAATGAGATAAA
1 -AAAATAAGATAAA
* ** *
22141097 AATAAAAAGGGGATA
1 AA-AATAA-GATAAA
*
22141112 AAAA-AACATAAA
1 AAAATAAGATAAA
22141124 AAAATAAGATAAA
1 AAAATAAGATAAA
*
22141137 TAAATAAGATAAA
1 AAAATAAGATAAA
22141150 GAATAAAGAT
Statistics
Matches: 60, Mismatches: 14, Indels: 12
0.70 0.16 0.14
Matches are distributed among these distances:
11 4 0.07
12 8 0.13
13 25 0.42
14 14 0.23
15 9 0.15
ACGTcount: A:0.72, C:0.01, G:0.11, T:0.16
Consensus pattern (13 bp):
AAAATAAGATAAA
Found at i:22141853 original size:99 final size:98
Alignment explanation
Indices: 22141703--22141895 Score: 289
Period size: 99 Copynumber: 2.0 Consensus size: 98
22141693 ACTCTTGCAA
* *
22141703 TGAAGCGTAGGCTATTATCTAGTATATTATTGAAGATGAGTCCTCACATACTTTGTAAAATTAAA
1 TGAAGCGTAGGCTATTATCTAATATATTATTAAAGATGAGTCCTCACATACTTTGTAAAATTAAA
*
22141768 ATGACACATGTAAAATTTAATTTACAATTATTAG
66 ATGACACATGT-AAAGTTAATTTACAATTATTAG
* * * *
22141802 TGAAGCGT-GGGTGATTATCTAATATATTATTAAAGATGAGTCTTGACATACTTTGTATAATTAA
1 TGAAGCGTAGGCT-ATTATCTAATATATTATTAAAGATGAGTCCTCACATACTTTGTAAAATTAA
*
22141866 AATGACACATGTAAAGTTAATTTGCAATTA
65 AATGACACATGTAAAGTTAATTTACAATTA
22141896 CTTGTCATTT
Statistics
Matches: 85, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
98 19 0.22
99 66 0.78
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.37
Consensus pattern (98 bp):
TGAAGCGTAGGCTATTATCTAATATATTATTAAAGATGAGTCCTCACATACTTTGTAAAATTAAA
ATGACACATGTAAAGTTAATTTACAATTATTAG
Found at i:22142593 original size:24 final size:25
Alignment explanation
Indices: 22142565--22142612 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
22142555 TAATAAAAAC
22142565 TAAA-TCCT-TAAAAAATACAACTAG
1 TAAATTCCTCTAAAAAATA-AACTAG
*
22142589 TAAATTCTTCTAAAAAATAAACTA
1 TAAATTCCTCTAAAAAATAAACTA
22142613 AATTTTCAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 4 0.19
25 8 0.38
26 9 0.43
ACGTcount: A:0.54, C:0.15, G:0.02, T:0.29
Consensus pattern (25 bp):
TAAATTCCTCTAAAAAATAAACTAG
Found at i:22143946 original size:47 final size:47
Alignment explanation
Indices: 22143893--22143984 Score: 175
Period size: 47 Copynumber: 2.0 Consensus size: 47
22143883 TTATAGGCAA
*
22143893 AGTAGCATCACTCATTTATATATTTTTATATGTGTGTGTGTGTGTGT
1 AGTAGCATCACTCATTTATATATTTATATATGTGTGTGTGTGTGTGT
22143940 AGTAGCATCACTCATTTATATATTTATATATGTGTGTGTGTGTGT
1 AGTAGCATCACTCATTTATATATTTATATATGTGTGTGTGTGTGT
22143985 TGTTACTTGA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.23, C:0.09, G:0.21, T:0.48
Consensus pattern (47 bp):
AGTAGCATCACTCATTTATATATTTATATATGTGTGTGTGTGTGTGT
Found at i:22149592 original size:2 final size:2
Alignment explanation
Indices: 22149585--22149609 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
22149575 TATGCACTTA
22149585 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
22149610 CTTTGATTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:22152335 original size:140 final size:142
Alignment explanation
Indices: 22152074--22152357 Score: 455
Period size: 140 Copynumber: 2.0 Consensus size: 142
22152064 AAAAATACTT
** *
22152074 TGTAAACAAAAAATAATGTATGAAAGTTTGAAAAGAATGGATCTTGAAAATTAAAAAAAAAAATG
1 TGTAAACAAAAAATAACATATGAAAGCTTGAAAAGAATGGATCTTGAAAATT--AAAAAAAAATG
* * ** *
22152139 CCTTGAATTAAGAAAAGAATTTGGAAAACACTTTGGTAATGGCTAATCTATGACCTTAGCCAAAC
64 CCTTAAATTAAGAAAAGAATTTAGAAAACACTTTAATAATGGCTAATCTATCACCTTAGCCAAAC
22152204 TACAAAGAAAACTA
129 TACAAAGAAAACTA
22152218 TGTAAACAAAAAATAACATATGAAAGCTTGAAAAGAATGGATCTTGAAAA-T-AAAAAAAATGCC
1 TGTAAACAAAAAATAACATATGAAAGCTTGAAAAGAATGGATCTTGAAAATTAAAAAAAAATGCC
*
22152281 TTAAATTAAGAAAAGAATTTAGAGAACACTTTAATAATGGCTAATCTATCACCTTAGCCAAACTA
66 TTAAATTAAGAAAAGAATTTAGAAAACACTTTAATAATGGCTAATCTATCACCTTAGCCAAACTA
22152346 CAAAGAAAACTA
131 CAAAGAAAACTA
22152358 CAAAAGAACT
Statistics
Matches: 131, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
140 83 0.63
143 1 0.01
144 47 0.36
ACGTcount: A:0.50, C:0.12, G:0.14, T:0.24
Consensus pattern (142 bp):
TGTAAACAAAAAATAACATATGAAAGCTTGAAAAGAATGGATCTTGAAAATTAAAAAAAAATGCC
TTAAATTAAGAAAAGAATTTAGAAAACACTTTAATAATGGCTAATCTATCACCTTAGCCAAACTA
CAAAGAAAACTA
Found at i:22155352 original size:9 final size:9
Alignment explanation
Indices: 22155338--22155386 Score: 53
Period size: 9 Copynumber: 5.4 Consensus size: 9
22155328 GAATAAAAAG
*
22155338 ATAACAATA
1 ATAACAACA
22155347 ATAACAACA
1 ATAACAACA
*
22155356 ACAACAACA
1 ATAACAACA
*
22155365 ACAACAACA
1 ATAACAACA
* *
22155374 ACAACAATA
1 ATAACAACA
22155383 ATAA
1 ATAA
22155387 TAATAATAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.67, C:0.22, G:0.00, T:0.10
Consensus pattern (9 bp):
ATAACAACA
Found at i:22155355 original size:3 final size:3
Alignment explanation
Indices: 22155349--22155380 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
22155339 TAACAATAAT
22155349 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
22155381 TAATAATAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Done.