Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 138 of 190
Found at i:22337145 original size:13 final size:13
Alignment explanation
Indices: 22337129--22337153 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22337119 TTTTCATTTC
22337129 ATTTTATTTTTTG
1 ATTTTATTTTTTG
22337142 ATTTTATTTTTT
1 ATTTTATTTTTT
22337154 TAACCCATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.04, T:0.80
Consensus pattern (13 bp):
ATTTTATTTTTTG
Found at i:22337259 original size:18 final size:17
Alignment explanation
Indices: 22337238--22337272 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
22337228 ATTCCATGAT
22337238 AAAAAAAAAGATCTTTTC
1 AAAAAAAAA-ATCTTTTC
*
22337256 AAAAAAACAATCTTTTC
1 AAAAAAAAAATCTTTTC
22337273 GAATAAAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.54, C:0.14, G:0.03, T:0.29
Consensus pattern (17 bp):
AAAAAAAAAATCTTTTC
Found at i:22342554 original size:3 final size:3
Alignment explanation
Indices: 22342546--22342571 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
22342536 GAACGGGATA
22342546 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
22342572 GTAGATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:22342582 original size:3 final size:3
Alignment explanation
Indices: 22342576--22342628 Score: 99
Period size: 3 Copynumber: 18.0 Consensus size: 3
22342566 TTATTAGTAG
22342576 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT- ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
22342623 ATA ATA
1 ATA ATA
22342629 GATATTTATG
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 47 0.96
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:22342806 original size:24 final size:22
Alignment explanation
Indices: 22342786--22342825 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
22342776 AAATATTCTG
22342786 TAAAAT-ATTTTATTAATTATT
1 TAAAATAATTTTATTAATTATT
22342807 TAAAATAATTTT-TTAATTA
1 TAAAATAATTTTATTAATTA
22342826 AATAAGAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TAAAATAATTTTATTAATTATT
Found at i:22343045 original size:24 final size:24
Alignment explanation
Indices: 22343000--22343045 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
22342990 ATATGAACAA
**
22343000 ATAAAAATAAAAAAAGCTATAAGC
1 ATAAAAATAAAAAAAGAAATAAGC
* *
22343024 ATAAAAATAAATAAATAAATAA
1 ATAAAAATAAAAAAAGAAATAA
22343046 ACAAAAATGC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.72, C:0.04, G:0.04, T:0.20
Consensus pattern (24 bp):
ATAAAAATAAAAAAAGAAATAAGC
Found at i:22344608 original size:14 final size:13
Alignment explanation
Indices: 22344589--22344636 Score: 55
Period size: 14 Copynumber: 3.7 Consensus size: 13
22344579 AATTAAAATA
22344589 ATATTAATTTTGAT
1 ATATTAATTTT-AT
*
22344603 ATATTAA-TTTAA
1 ATATTAATTTTAT
22344615 ATTATTAATTTTAT
1 A-TATTAATTTTAT
22344629 A-ATTAATT
1 ATATTAATT
22344637 AATATAATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
12 9 0.30
13 9 0.30
14 12 0.40
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (13 bp):
ATATTAATTTTAT
Found at i:22344608 original size:25 final size:25
Alignment explanation
Indices: 22344577--22344634 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
22344567 TATATTTAAA
22344577 ATAATTAAAAT-AA-TATTAATTTT
1 ATAATTAAAATAAATTATTAATTTT
**
22344600 GATATATTAATTTAAATTATTAATTTT
1 -ATA-ATTAAAATAAATTATTAATTTT
22344627 ATAATTAA
1 ATAATTAA
22344635 TTAATATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
24 3 0.10
25 11 0.38
26 5 0.17
27 10 0.34
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (25 bp):
ATAATTAAAATAAATTATTAATTTT
Found at i:22344610 original size:29 final size:27
Alignment explanation
Indices: 22344578--22344644 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
22344568 ATATTTAAAA
22344578 TAATTAAAATAATATTAATTTTGATATAT
1 TAATTAAAATAATATTAATTTT-ATA-AT
*
22344607 TAATTTAAAT--TATTAATTTTATAAT
1 TAATTAAAATAATATTAATTTTATAAT
*
22344632 TAATTAATATAAT
1 TAATTAAAATAAT
22344645 GATGATAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
25 10 0.30
26 3 0.09
27 11 0.33
29 9 0.27
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (27 bp):
TAATTAAAATAATATTAATTTTATAAT
Found at i:22345609 original size:13 final size:13
Alignment explanation
Indices: 22345569--22345615 Score: 51
Period size: 13 Copynumber: 3.4 Consensus size: 13
22345559 TATTAGTTAA
22345569 AAAATATTAAAA-T
1 AAAA-ATTAAAACT
22345582 AAATAATTAACAAACT
1 AAA-AATT-A-AAACT
22345598 AAAAATTAAAACT
1 AAAAATTAAAACT
22345611 AAAAA
1 AAAAA
22345616 AGAAAAAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
13 16 0.53
14 3 0.10
15 7 0.23
16 4 0.13
ACGTcount: A:0.70, C:0.06, G:0.00, T:0.23
Consensus pattern (13 bp):
AAAAATTAAAACT
Found at i:22345786 original size:2 final size:2
Alignment explanation
Indices: 22345779--22345817 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
22345769 CTGATCCAAC
* *
22345779 AT AT AT AT AT AT TT AT GT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22345818 ACCCGCATCT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
AT
Found at i:22346230 original size:9 final size:9
Alignment explanation
Indices: 22346218--22346255 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
22346208 TTATCTCATT
*
22346218 AAAAAGGAA
1 AAAAAGCAA
22346227 AAAAAGCAA
1 AAAAAGCAA
*
22346236 AAAAAACAA
1 AAAAAGCAA
22346245 AAAAA-CAA
1 AAAAAGCAA
22346253 AAA
1 AAA
22346256 CAAAAACAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
8 6 0.22
9 21 0.78
ACGTcount: A:0.84, C:0.08, G:0.08, T:0.00
Consensus pattern (9 bp):
AAAAAGCAA
Found at i:22347041 original size:16 final size:15
Alignment explanation
Indices: 22347022--22347060 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
22347012 TTATTTAATT
*
22347022 AAAAAAAGTCAAAACA
1 AAAAAAAGACAAAA-A
*
22347038 AAAAAATGACAAAAA
1 AAAAAAAGACAAAAA
22347053 AAAAAAAG
1 AAAAAAAG
22347061 GAAAACCAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.79, C:0.08, G:0.08, T:0.05
Consensus pattern (15 bp):
AAAAAAAGACAAAAA
Found at i:22347745 original size:61 final size:60
Alignment explanation
Indices: 22347622--22347746 Score: 155
Period size: 62 Copynumber: 2.0 Consensus size: 60
22347612 GATGTAATAT
* * *
22347622 AAATATTTATTATTTTATATTATAATAAAAAATATTTAATTAAAGAAATTTTTGATGCACA
1 AAATATTTATTATTTTATATTATAATAAAAAATAATTAATTAAAGAAAATTTTAAT-CACA
* *
22347683 AAATATTTATTACTTTTGTATTATAATAAGAAAA-AATTAGTTAATAGAAAATTTTAAT-ACA
1 AAATATTTATTA-TTTTATATTATAATAA-AAAATAATTAATTAA-AGAAAATTTTAATCACA
22347744 AAA
1 AAA
22347747 AATTAATAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
61 18 0.32
62 23 0.41
63 15 0.27
ACGTcount: A:0.50, C:0.03, G:0.06, T:0.42
Consensus pattern (60 bp):
AAATATTTATTATTTTATATTATAATAAAAAATAATTAATTAAAGAAAATTTTAATCACA
Found at i:22347954 original size:26 final size:27
Alignment explanation
Indices: 22347920--22347970 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
22347910 ATAAGATAAT
*
22347920 TATACATATTTTTTAATTAAATATACA
1 TATACATATATTTTAATTAAATATACA
* *
22347947 TATA-ATATATTTTATTTGAATATA
1 TATACATATATTTTAATTAAATATA
22347971 TTATAATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (27 bp):
TATACATATATTTTAATTAAATATACA
Found at i:22348746 original size:11 final size:12
Alignment explanation
Indices: 22348730--22348758 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
22348720 TTTATGTTTT
22348730 AAAAAATTAAA-
1 AAAAAATTAAAG
22348741 AAAAAATTAAAG
1 AAAAAATTAAAG
22348753 AAAAAA
1 AAAAAA
22348759 AAGAACATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.14
Consensus pattern (12 bp):
AAAAAATTAAAG
Found at i:22349193 original size:21 final size:22
Alignment explanation
Indices: 22349155--22349204 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
22349145 TTAAAAATAA
* **
22349155 GATAATTGCATTGGAAGGT-AT
1 GATAAATGCATTAAAAGGTAAT
22349176 GATAAATGCATTAAAAGGTAAAT
1 GATAAATGCATTAAAAGGT-AAT
22349199 GATAAA
1 GATAAA
22349205 GACAATAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 16 0.67
23 8 0.33
ACGTcount: A:0.46, C:0.04, G:0.22, T:0.28
Consensus pattern (22 bp):
GATAAATGCATTAAAAGGTAAT
Found at i:22349523 original size:39 final size:39
Alignment explanation
Indices: 22349480--22349563 Score: 159
Period size: 39 Copynumber: 2.2 Consensus size: 39
22349470 CGCTTTTAAC
22349480 TATTCTAGATAAAGGTCGAAATATCCTACTAATGTTGAA
1 TATTCTAGATAAAGGTCGAAATATCCTACTAATGTTGAA
22349519 TATTCTAGATAAAGGTCGAAATATCCTACTAATGTTGAA
1 TATTCTAGATAAAGGTCGAAATATCCTACTAATGTTGAA
*
22349558 TTTTCT
1 TATTCT
22349564 GCAACAATAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.37
Consensus pattern (39 bp):
TATTCTAGATAAAGGTCGAAATATCCTACTAATGTTGAA
Found at i:22349788 original size:134 final size:134
Alignment explanation
Indices: 22349548--22349818 Score: 364
Period size: 134 Copynumber: 2.0 Consensus size: 134
22349538 AATATCCTAC
* *** *
22349548 TAATGTTGAATTTTCTGCAACAATAAATCCCTTTTAGTAACTTTTTATAATATCGGGAGTGATCT
1 TAATGTTGAATTTTCTACAACAATAAATCCCTTTTAGTAACTTCCCATAATATCGGGAGGGATCT
* * ** *
22349613 GGTCAGGTTGGAACTCATTTGGTTCCTTGATTTTAGCTTTTATTGCCTTATGGGGGATATAATGT
66 GATCAGGTTGGAACTCATTTGGTTCCTTGATGTTAGCTTTTACGGCCTTATGAGGGATATAATGT
22349678 AAAA
131 AAAA
* * * * *
22349682 TAATGTTGCATTTTCTACAACACTAAATCTCTTTTAGTTACTTCCCATATTAAT-GGGAGGGATC
1 TAATGTTGAATTTTCTACAACAATAAATCCCTTTTAGTAACTTCCCATAAT-ATCGGGAGGGATC
* * *
22349746 TTATCATGTTGGAACTCATTTGGTTCTTTGATGTTAGCTTTTACGGCCTTATGAGGGATATAATG
65 TGATCAGGTTGGAACTCATTTGGTTCCTTGATGTTAGCTTTTACGGCCTTATGAGGGATATAATG
22349811 TAAAA
130 TAAAA
22349816 TAA
1 TAA
22349819 ACTTAAACAA
Statistics
Matches: 118, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
134 116 0.98
135 2 0.02
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (134 bp):
TAATGTTGAATTTTCTACAACAATAAATCCCTTTTAGTAACTTCCCATAATATCGGGAGGGATCT
GATCAGGTTGGAACTCATTTGGTTCCTTGATGTTAGCTTTTACGGCCTTATGAGGGATATAATGT
AAAA
Found at i:22350160 original size:15 final size:15
Alignment explanation
Indices: 22350140--22350172 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
22350130 GTTATTATTA
22350140 TTTATTTTCTT-TTTT
1 TTTATTTT-TTATTTT
22350155 TTTATTTTTTATTTT
1 TTTATTTTTTATTTT
22350170 TTT
1 TTT
22350173 CCTTCTTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 2 0.12
15 15 0.88
ACGTcount: A:0.09, C:0.03, G:0.00, T:0.88
Consensus pattern (15 bp):
TTTATTTTTTATTTT
Found at i:22350186 original size:17 final size:16
Alignment explanation
Indices: 22350145--22350196 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
22350135 TATTATTTAT
* *
22350145 TTTCTTTTTTTTTATTT
1 TTTC-TTTTTTTTCTTC
* *
22350162 TTTATTTTTTTCCTTC
1 TTTCTTTTTTTTCTTC
22350178 TTTCTTTTTTCTTCTTC
1 TTTCTTTTTT-TTCTTC
22350195 TT
1 TT
22350197 ATTTCCTTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
16 18 0.64
17 10 0.36
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTCTTTTTTTTCTTC
Found at i:22352510 original size:6 final size:6
Alignment explanation
Indices: 22352492--22352540 Score: 66
Period size: 6 Copynumber: 8.3 Consensus size: 6
22352482 TTTCACTTTT
*
22352492 AACAAA AA-AAA AATCAAA AACAAA AA-AAA ATCAAA AACAAA AACAAA
1 AACAAA AACAAA AA-CAAA AACAAA AACAAA AACAAA AACAAA AACAAA
22352539 AA
1 AA
22352541 GATTCACAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
5 9 0.24
6 24 0.63
7 5 0.13
ACGTcount: A:0.84, C:0.12, G:0.00, T:0.04
Consensus pattern (6 bp):
AACAAA
Found at i:22352518 original size:17 final size:17
Alignment explanation
Indices: 22352496--22352539 Score: 79
Period size: 17 Copynumber: 2.5 Consensus size: 17
22352486 ACTTTTAACA
22352496 AAAAAAAAATCAAAAAC
1 AAAAAAAAATCAAAAAC
22352513 AAAAAAAAATCAAAAAC
1 AAAAAAAAATCAAAAAC
22352530 AAAAACAAAA
1 AAAAA-AAAA
22352540 AGATTCACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 22 0.85
18 4 0.15
ACGTcount: A:0.84, C:0.11, G:0.00, T:0.05
Consensus pattern (17 bp):
AAAAAAAAATCAAAAAC
Found at i:22365134 original size:7 final size:7
Alignment explanation
Indices: 22365122--22365155 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
22365112 AAAAAATGGA
22365122 AAGAAAC
1 AAGAAAC
22365129 AAGAAAC
1 AAGAAAC
22365136 AAGAAAC
1 AAGAAAC
22365143 AAGAAAC
1 AAGAAAC
22365150 AAGAAA
1 AAGAAA
22365156 AAAAAAGTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.74, C:0.12, G:0.15, T:0.00
Consensus pattern (7 bp):
AAGAAAC
Found at i:22366223 original size:41 final size:41
Alignment explanation
Indices: 22366178--22366364 Score: 157
Period size: 42 Copynumber: 4.5 Consensus size: 41
22366168 GATTGTTAAT
**
22366178 GAGCAATTTATTTTTTGAAGTTGCGATGCCTCTGTTTAGAG
1 GAGCAATTTATTTTTAAAAGTTGCGATGCCTCTGTTTAGAG
* * * *
22366219 GAGCAATCTATTTTTCAAAGTTGTGATGCCTCTGATTAGAG
1 GAGCAATTTATTTTTAAAAGTTGCGATGCCTCTGTTTAGAG
* *
22366260 GAGAAATTTACTTTTCAAAAG-T-C-ATTGAACCTCTGTTTAGAG
1 GAGCAATTTA-TTTTTAAAAGTTGCGA-TG--CCTCTGTTTAGAG
* * * **
22366302 GAGCAATTTATTTTTCAAAAGTCGTTGA-GCCTTTGACTAGAG
1 GAGCAATTTATTTTT-AAAAGTTG-CGATGCCTCTGTTTAGAG
**
22366344 GAGCCTTTTATTTTTAAAAGT
1 GAGCAATTTATTTTTAAAAGT
22366365 CATTGAGCCT
Statistics
Matches: 117, Mismatches: 20, Indels: 18
0.75 0.13 0.12
Matches are distributed among these distances:
39 1 0.01
40 2 0.02
41 55 0.47
42 57 0.49
44 1 0.01
46 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.39
Consensus pattern (41 bp):
GAGCAATTTATTTTTAAAAGTTGCGATGCCTCTGTTTAGAG
Found at i:22366301 original size:83 final size:83
Alignment explanation
Indices: 22366206--22366384 Score: 245
Period size: 83 Copynumber: 2.2 Consensus size: 83
22366196 AGTTGCGATG
* *
22366206 CCTCTGTTTAGAGGAGCAATCTATTTTTC-AAAGTTG-TGATGCCTCTGATTAGAGGAGAAATTT
1 CCTCTGTTTAGAGGAGCAATCTATTTTTCAAAAGTCGTTGA-GCCTCTGACTAGAGGAGAAATTT
22366269 ACTTTTCAAAAGTCATTGAA
65 A-TTTTCAAAAGTCATTGAA
* * ***
22366289 CCTCTGTTTAGAGGAGCAATTTATTTTTCAAAAGTCGTTGAGCCTTTGACTAGAGGAGCCTTTTA
1 CCTCTGTTTAGAGGAGCAATCTATTTTTCAAAAGTCGTTGAGCCTCTGACTAGAGGAGAAATTTA
* *
22366354 TTTTTAAAAGTCATTGAG
66 TTTTCAAAAGTCATTGAA
22366372 CCTCTGTTTAGAG
1 CCTCTGTTTAGAG
22366385 AAGCTTTGTT
Statistics
Matches: 85, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
83 57 0.67
84 25 0.29
85 3 0.04
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.37
Consensus pattern (83 bp):
CCTCTGTTTAGAGGAGCAATCTATTTTTCAAAAGTCGTTGAGCCTCTGACTAGAGGAGAAATTTA
TTTTCAAAAGTCATTGAA
Found at i:22366384 original size:41 final size:41
Alignment explanation
Indices: 22366205--22366476 Score: 190
Period size: 42 Copynumber: 6.4 Consensus size: 41
22366195 AAGTTGCGAT
* * *
22366205 GCCTCTGTTTAGAGGAGCAATCTATTTTTCAAAGT--TGTGA
1 GCCTCTGTTTAGAGGAGCATTTTATTTTTAAAAGTCAT-TGA
* * * *
22366245 TGCCTCTGATTAGAGGAGAAATTTACTTTTCAAAAGTCATTGA
1 -GCCTCTGTTTAGAGGAGCATTTTA-TTTTTAAAAGTCATTGA
* * *
22366288 ACCTCTGTTTAGAGGAGCAATTTATTTTTCAAAAGTCGTTGA
1 GCCTCTGTTTAGAGGAGCATTTTATTTTT-AAAAGTCATTGA
* ** *
22366330 GCCTTTGACTAGAGGAGCCTTTTATTTTTAAAAGTCATTGA
1 GCCTCTGTTTAGAGGAGCATTTTATTTTTAAAAGTCATTGA
* * * *
22366371 GCCTCTGTTTAGAGAAGCTTTGTTTATTTTTTCTGAAA-TCGTTGA
1 GCCTCTGTTTAGAGGAGC-AT-TTTA--TTTT-TAAAAGTCATTGA
* * * * **
22366416 GCCTCTATTTATAGGAGCTTTGTTTATTGTCCAAAGTCATTGA
1 GCCTCTGTTTAGAGGAGC-AT-TTTATTTTTAAAAGTCATTGA
* *
22366459 GCCTCTGCTTAAAGGAGC
1 GCCTCTGTTTAGAGGAGC
22366477 CTTCGTTTGT
Statistics
Matches: 187, Mismatches: 34, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
41 50 0.27
42 68 0.36
43 31 0.17
44 1 0.01
45 33 0.18
46 4 0.02
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.39
Consensus pattern (41 bp):
GCCTCTGTTTAGAGGAGCATTTTATTTTTAAAAGTCATTGA
Found at i:22366754 original size:19 final size:18
Alignment explanation
Indices: 22366716--22366779 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 18
22366706 TCATTCTATT
* *
22366716 TTATTTTATTTTTATTTTA
1 TTATTTTATTTTGA-ATTA
22366735 TTATTTTATTATTGAATTA
1 TTATTTTATT-TTGAATTA
* * *
22366754 TTTTTTGTATTTTGTATTT
1 TTATTT-TATTTTGAATTA
22366773 TTATTTT
1 TTATTTT
22366780 TTGTATCTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
18 1 0.03
19 29 0.78
20 7 0.19
ACGTcount: A:0.20, C:0.00, G:0.05, T:0.75
Consensus pattern (18 bp):
TTATTTTATTTTGAATTA
Found at i:22366796 original size:4 final size:4
Alignment explanation
Indices: 22366772--22366918 Score: 54
Period size: 4 Copynumber: 36.5 Consensus size: 4
22366762 ATTTTGTATT
* * *
22366772 TTTA TTTT TTGTA TCTTA TTTA TTTA -TTA TTACTA TTTA TTAA TATA
1 TTTA TTTA TT-TA T-TTA TTTA TTTA TTTA TT--TA TTTA TTTA TTTA
* * * * *
22366819 TATA TTTA -TTA TTTA TCTA TTGA TATA TATA CTTTA -TTA -TTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA
* * * * * * *
22366865 TCTA -TTA TTGT- TATC TTTA TCTA TTAA TATA TTATC TTTA TTTA TTTA
1 TTTA TTTA TT-TA TTTA TTTA TTTA TTTA TTTA TT-TA TTTA TTTA TTTA
22366913 TTTA TT
1 TTTA TT
22366919 ATTATTATTT
Statistics
Matches: 106, Mismatches: 25, Indels: 24
0.68 0.16 0.15
Matches are distributed among these distances:
3 15 0.14
4 74 0.70
5 12 0.11
6 5 0.05
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (4 bp):
TTTA
Found at i:22366797 original size:22 final size:22
Alignment explanation
Indices: 22366751--22366799 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
22366741 TATTATTGAA
* *
22366751 TTATTTTTTGTATTTTGTATTT
1 TTATTTTTTGTATCTTATATTT
22366773 TTATTTTTTGTATCTTAT-TTAT
1 TTATTTTTTGTATCTTATATT-T
22366795 TTATT
1 TTATT
22366800 ATTACTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 2 0.08
22 22 0.92
ACGTcount: A:0.16, C:0.02, G:0.06, T:0.76
Consensus pattern (22 bp):
TTATTTTTTGTATCTTATATTT
Found at i:22366839 original size:31 final size:30
Alignment explanation
Indices: 22366792--22366870 Score: 92
Period size: 31 Copynumber: 2.6 Consensus size: 30
22366782 GTATCTTATT
*
22366792 TATTTATTA-TTA-CTATTTATTAATATATA-
1 TATTTATTATTTATCTATTGA-T-ATATATAC
22366821 TATTTATTATTTATCTATTGATATATATAC
1 TATTTATTATTTATCTATTGATATATATAC
*
22366851 TTTATTATTATTTATCTATT
1 TAT-TTATTATTTATCTATT
22366871 ATTGTTATCT
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
29 16 0.36
30 6 0.14
31 22 0.50
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.61
Consensus pattern (30 bp):
TATTTATTATTTATCTATTGATATATATAC
Found at i:22366884 original size:6 final size:7
Alignment explanation
Indices: 22366853--22366926 Score: 50
Period size: 6 Copynumber: 10.9 Consensus size: 7
22366843 ATATATACTT
22366853 TATTAT-
1 TATTATC
22366859 TATTTATC
1 TA-TTATC
22366867 TATTAT-
1 TATTATC
*
22366873 TGTTATC
1 TATTATC
22366880 T-TTATC
1 TATTATC
*
22366886 TATTAATA
1 TATT-ATC
22366894 TATTATC
1 TATTATC
*
22366901 T-TTATT
1 TATTATC
*
22366907 TATTTATT
1 TA-TTATC
22366915 TATTAT-
1 TATTATC
22366921 TATTAT
1 TATTAT
22366927 TTTTTCTTTT
Statistics
Matches: 57, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
6 24 0.42
7 18 0.32
8 15 0.26
ACGTcount: A:0.28, C:0.05, G:0.01, T:0.65
Consensus pattern (7 bp):
TATTATC
Found at i:22366901 original size:21 final size:19
Alignment explanation
Indices: 22366852--22366920 Score: 70
Period size: 21 Copynumber: 3.5 Consensus size: 19
22366842 TATATATACT
22366852 TTATTATTA--TTTATCTA
1 TTATTATTATCTTTATCTA
*
22366869 TTATTGTTATCTTTATCTA
1 TTATTATTATCTTTATCTA
*
22366888 TTAATATATTATCTTTATTTA
1 TT-AT-TATTATCTTTATCTA
22366909 TTTATTTATTAT
1 -TTA-TTATTAT
22366921 TATTATTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
17 8 0.19
19 10 0.23
20 2 0.05
21 20 0.47
22 3 0.07
ACGTcount: A:0.28, C:0.06, G:0.01, T:0.65
Consensus pattern (19 bp):
TTATTATTATCTTTATCTA
Found at i:22366924 original size:27 final size:27
Alignment explanation
Indices: 22366716--22366926 Score: 87
Period size: 27 Copynumber: 7.4 Consensus size: 27
22366706 TCATTCTATT
*
22366716 TTATT-TTATTTTTATTT-TATTATTTTA
1 TTATTATTATCTTTATTTAT-TTA-TTTA
*
22366743 TTATTGAATTAT-TTT-TTGTATTT-TGTA
1 TTATT--ATTATCTTTATT-TATTTATTTA
* *
22366770 TTTTTATT-TTTTGTATCTTATTTATTTA
1 TTATTATTATCTT-TAT-TTATTTATTTA
* * * *
22366798 TTATTACTA--TTTATTAATATATATA
1 TTATTATTATCTTTATTTATTTATTTA
* *
22366823 TTTATTATTTATCTATTGATATATATACTTTA
1 -TTATTA-TTATCT-TT-ATTTATTTA-TTTA
*
22366855 TTATTATTTATCTATTATTGTTATCTTTATCTA
1 TTATTA-TTATCT-TTA-T-TTA--TTTATTTA
22366888 TTAATATATTATCTTTATTTATTTATTTA
1 TT-AT-TATTATCTTTATTTATTTATTTA
22366917 TTATTATTAT
1 TTATTATTAT
22366927 TTTTTCTTTT
Statistics
Matches: 144, Mismatches: 16, Indels: 48
0.69 0.08 0.23
Matches are distributed among these distances:
24 1 0.01
25 13 0.09
26 10 0.07
27 28 0.19
28 14 0.10
29 16 0.11
30 8 0.06
31 27 0.19
32 6 0.04
33 8 0.06
34 11 0.08
35 2 0.01
ACGTcount: A:0.27, C:0.04, G:0.03, T:0.66
Consensus pattern (27 bp):
TTATTATTATCTTTATTTATTTATTTA
Found at i:22366926 original size:21 final size:21
Alignment explanation
Indices: 22366787--22366928 Score: 74
Period size: 23 Copynumber: 6.3 Consensus size: 21
22366777 TTTTTGTATC
*
22366787 TTATTTATTTATTATTACTAT
1 TTATTTATTTATTATTATTAT
* *
22366808 TTATTAATATATATATTTATTAT
1 TTATTTATTTAT-TA-TTATTAT
* *
22366831 TTATCTATTGA-TA-TATATACT
1 TTATTTATTTATTATTAT-TA-T
*
22366852 TTATTATTATTTATCTATTATTGT
1 TTA-T-TTATTTAT-TATTATTAT
* *
22366876 TATCTTTATCTATTAATATATTATCT
1 T-TATTTATTTATT-AT-TATTA--T
22366902 TTATTTATTTATTTATTATTA-
1 TTATTTATTTA-TTATTATTAT
22366923 TTATTT
1 TTATTT
22366929 TTTCTTTTCT
Statistics
Matches: 91, Mismatches: 15, Indels: 30
0.67 0.11 0.22
Matches are distributed among these distances:
19 3 0.03
20 2 0.02
21 22 0.24
22 4 0.04
23 27 0.30
24 12 0.13
25 14 0.15
26 7 0.08
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.63
Consensus pattern (21 bp):
TTATTTATTTATTATTATTAT
Found at i:22367780 original size:16 final size:16
Alignment explanation
Indices: 22367756--22367788 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
22367746 CTTTAAAAAA
22367756 TTATATTTATATTTAT
1 TTATATTTATATTTAT
*
22367772 TTATTTTTATATTTAT
1 TTATATTTATATTTAT
22367788 T
1 T
22367789 ATTATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (16 bp):
TTATATTTATATTTAT
Found at i:22369010 original size:143 final size:143
Alignment explanation
Indices: 22368776--22369305 Score: 654
Period size: 143 Copynumber: 3.6 Consensus size: 143
22368766 ATATGAGATT
* * * * *
22368776 TTTAAAGTTGCTGAGCCTTTACTTAGAGGTGCTTTTTCAAGATG-AAA-TTTAAAGTTGTTAAGC
1 TTTAAAGTTGTTGAGCCTTTGCTTAGAAGAGCTTTTTCAAGATGAAAATTTTAAAGTTGTTGAGC
* * * *
22368839 CTTTACTTAGAGGTGCTTTTTCAAGATGAAATTTAAAGTTGTTAAGCCTCTGCTTAGAGGAGCTT
66 CTCTACTTAGAGGAGCTTTTTCAAGATGAAGTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTT
22368904 TTTCAAGATGAAG
131 TTTCAAGATGAAG
*
22368917 TTTAAAGTTGTTGAGCCTTTGCTTAAAAGAGCTTTTTCAAGATGAAAATTTTAAAGTTGTTGAGC
1 TTTAAAGTTGTTGAGCCTTTGCTTAGAAGAGCTTTTTCAAGATGAAAATTTTAAAGTTGTTGAGC
* * *
22368982 CTCTGCTTAGAGGAGCTTTTACAAGATGAAGTTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTT
66 CTCTACTTAGAGGAGCTTTTTCAAGATGAAGTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTT
22369047 TTTCAAGATGAAG
131 TTTCAAGATGAAG
* * *
22369060 TTTAAAATTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGAAGTGCTTTTTCAAGATGAAG
1 TTTAAAGTTGTTGAGCCTTTGCTTAGAAGAGCTTTTTCAAGATG-A----------AA-AT----
* *
22369125 TTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGAAGTTTAAAGTTATTGAGCCT
50 TTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTCAAGATGAAGTTTAAAGTTGTTGAGCCT
*
22369190 CTGCTTAGAGGAGC-TTTTCAAGATGAGATT
115 CTGCTTAGAGGAGCTTTTTCAAGATGA-A-G
* * * *
22369220 TTTAAAGTTGTTGAGCCTTTGCTTAGAAGAGCATTTTC-AGATGAGATTTTTAAAATTGTTGAGC
1 TTTAAAGTTGTTGAGCCTTTGCTTAGAAGAGCTTTTTCAAGATGAAAATTTTAAAGTTGTTGAGC
22369284 CTCTACTTAGAGGAGCCTTTTT
66 CTCTACTTAGAGGAG-CTTTTT
22369306 AAATTTTCAA
Statistics
Matches: 339, Mismatches: 29, Indels: 39
0.83 0.07 0.10
Matches are distributed among these distances:
141 39 0.12
142 3 0.01
143 155 0.46
144 7 0.02
147 1 0.00
148 1 0.00
154 2 0.01
155 2 0.01
158 13 0.04
159 82 0.24
160 34 0.10
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (143 bp):
TTTAAAGTTGTTGAGCCTTTGCTTAGAAGAGCTTTTTCAAGATGAAAATTTTAAAGTTGTTGAGC
CTCTACTTAGAGGAGCTTTTTCAAGATGAAGTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTT
TTTCAAGATGAAG
Found at i:22369106 original size:47 final size:47
Alignment explanation
Indices: 22368776--22369107 Score: 484
Period size: 47 Copynumber: 7.0 Consensus size: 47
22368766 ATATGAGATT
* * * * *
22368776 TTTAAAGTTGCTGAGCCTTTACTTAGAGGTGCTTTTTCAAGATGAAA
1 TTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGAAG
* * * * *
22368823 TTTAAAGTTGTTAAGCCTTTACTTAGAGGTGCTTTTTCAAGATGAAA
1 TTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGAAG
*
22368870 TTTAAAGTTGTTAAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGAAG
1 TTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGAAG
* * * *
22368917 TTTAAAGTTGTTGAGCCTTTGCTTAAAAGAGCTTTTTCAAGATGAAAAT
1 TTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATG--AAG
*
22368966 TTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTACAAGATGAAG
1 TTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGAAG
*
22369013 TTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTCAAGATGAAG
1 TTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGAAG
*
22369060 TTTAAAATTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGAAG
1 TTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGAAG
22369107 T
1 T
22369108 GCTTTTTCAA
Statistics
Matches: 263, Mismatches: 20, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
47 221 0.84
49 42 0.16
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (47 bp):
TTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGAAG
Found at i:22369113 original size:18 final size:18
Alignment explanation
Indices: 22369090--22369125 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
22369080 GCTTAGAGGA
22369090 GCTTTTTCAAGATGAAGT
1 GCTTTTTCAAGATGAAGT
22369108 GCTTTTTCAAGATGAAGT
1 GCTTTTTCAAGATGAAGT
22369126 TTAAAGTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.11, G:0.22, T:0.39
Consensus pattern (18 bp):
GCTTTTTCAAGATGAAGT
Found at i:22369147 original size:65 final size:65
Alignment explanation
Indices: 22369043--22369172 Score: 251
Period size: 65 Copynumber: 2.0 Consensus size: 65
22369033 ACTTAGAGGA
22369043 GCTTTTTCAAGATGAAGTTTAAAATTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGAAGT
1 GCTTTTTCAAGATGAAGTTTAAAATTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGAAGT
*
22369108 GCTTTTTCAAGATGAAGTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGAAGT
1 GCTTTTTCAAGATGAAGTTTAAAATTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGAAGT
22369173 TTAAAGTTAT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.37
Consensus pattern (65 bp):
GCTTTTTCAAGATGAAGTTTAAAATTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGAAGT
Found at i:22369177 original size:47 final size:49
Alignment explanation
Indices: 22369108--22369305 Score: 273
Period size: 48 Copynumber: 4.1 Consensus size: 49
22369098 AAGATGAAGT
22369108 GCTTTTTCAAGATGA-A-GTTTAAAGTTGTTGAGCCTCTGCTTAGAGGA
1 GCTTTTTCAAGATGAGATGTTTAAAGTTGTTGAGCCTCTGCTTAGAGGA
*
22369155 GCTTTTTCAAGATGA-A-GTTTAAAGTTATTGAGCCTCTGCTTAGAGGA
1 GCTTTTTCAAGATGAGATGTTTAAAGTTGTTGAGCCTCTGCTTAGAGGA
* * *
22369202 GC-TTTTCAAGATGAGATTTTTAAAGTTGTTGAGCCTTTGCTTAGAAGA
1 GCTTTTTCAAGATGAGATGTTTAAAGTTGTTGAGCCTCTGCTTAGAGGA
* * * *
22369250 GCATTTTC-AGATGAGATTTTTAAAATTGTTGAGCCTCTACTTAGAGGA
1 GCTTTTTCAAGATGAGATGTTTAAAGTTGTTGAGCCTCTGCTTAGAGGA
22369298 GCCTTTTT
1 G-CTTTTT
22369306 AAATTTTCAA
Statistics
Matches: 137, Mismatches: 10, Indels: 6
0.90 0.07 0.04
Matches are distributed among these distances:
46 12 0.09
47 49 0.36
48 66 0.48
49 10 0.07
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.38
Consensus pattern (49 bp):
GCTTTTTCAAGATGAGATGTTTAAAGTTGTTGAGCCTCTGCTTAGAGGA
Found at i:22369193 original size:112 final size:111
Alignment explanation
Indices: 22368996--22369215 Score: 395
Period size: 112 Copynumber: 2.0 Consensus size: 111
22368986 GCTTAGAGGA
22368996 GCTTTTACAAGATGAAGTTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTCAAGATGAAGT
1 GCTTTTACAAGATGAAGTTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTCAAGATGAAGT
*
22369061 TTAAAATTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGAAGT
66 TTAAAATTATTGAGCCTCTGCTTAGAGGAGC-TTTTCAAGATGAAGT
* *
22369108 GCTTTTTCAAGATGAAGTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGAAGT
1 GCTTTTACAAGATGAAGTTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTCAAGATGAAGT
*
22369173 TTAAAGTTATTGAGCCTCTGCTTAGAGGAGCTTTTCAAGATGA
66 TTAAAATTATTGAGCCTCTGCTTAGAGGAGCTTTTCAAGATGA
22369216 GATTTTTAAA
Statistics
Matches: 104, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
111 12 0.12
112 92 0.88
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.36
Consensus pattern (111 bp):
GCTTTTACAAGATGAAGTTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTCAAGATGAAGT
TTAAAATTATTGAGCCTCTGCTTAGAGGAGCTTTTCAAGATGAAGT
Found at i:22369243 original size:48 final size:48
Alignment explanation
Indices: 22369111--22369392 Score: 266
Period size: 48 Copynumber: 6.1 Consensus size: 48
22369101 ATGAAGTGCT
* *
22369111 TTTTCAAGATGAA-GTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCT
1 TTTTCAAGATGAATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCA
* *
22369158 TTTTCAAGATGAA-GTTTAAAGTTATTGAGCCTCTGCTTAGAGGAGC-
1 TTTTCAAGATGAATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCA
* *
22369204 TTTTCAAGATGAGATTTTTAAAGTTGTTGAGCCTTTGCTTAGAAGAGCA
1 TTTTCAAGATGA-ATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCA
* * *
22369253 TTTTC-AGATGAGATTTTTAAAATTGTTGAGCCTCTACTTAGAGGAGCC
1 TTTTCAAGATGA-ATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCA
* ** * * *
22369301 TTTTTAA-AT---TTTCAAAAGTCGTTGAGCCTTTGCTTAGAGGAGCC
1 TTTTCAAGATGAATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCA
** * * *
22369345 TCTTT-AA-AT---TTTCAAAAATTATTGAGCCTCTGCTTAGAGGAGCC
1 T-TTTCAAGATGAATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCA
22369389 TTTT
1 TTTT
22369393 AAATTTTCAA
Statistics
Matches: 209, Mismatches: 21, Indels: 14
0.86 0.09 0.06
Matches are distributed among these distances:
43 3 0.01
44 66 0.32
45 3 0.01
46 12 0.06
47 46 0.22
48 73 0.35
49 6 0.03
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.38
Consensus pattern (48 bp):
TTTTCAAGATGAATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCA
Found at i:22369262 original size:159 final size:160
Alignment explanation
Indices: 22368947--22369263 Score: 505
Period size: 159 Copynumber: 2.0 Consensus size: 160
22368937 GCTTAAAAGA
*
22368947 GCTTTTTCAAGATGAAAATTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTACAAGATGAA
1 GCTTTTTCAAGATG-AAAGTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTACAAGATGAA
*
22369012 GTTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTCAAGATGAAGTTTAAAATTGTTGAGCC
65 GTTTAAAGTTATTGAGCCTCTACTTAGAGGAGCTTTTTCAAGATGAAGTTTAAAATTGTTGAGCC
* *
22369077 TCTGCTTAGAGGAGCTTTTTCAAGATGAAGT
130 TCTGCTTAGAAGAGCATTTTCAAGATGAAGT
*
22369108 GCTTTTTCAAGATG-AAGTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGAAG
1 GCTTTTTCAAGATGAAAGTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTACAAGATGAAG
* * *
22369172 TTTAAAGTTATTGAGCCTCTGCTTAGAGGAGC-TTTTCAAGATGAGATTTTTAAAGTTGTTGAGC
66 TTTAAAGTTATTGAGCCTCTACTTAGAGGAGCTTTTTCAAGATGA-A-GTTTAAAATTGTTGAGC
*
22369236 CTTTGCTTAGAAGAGCATTTTC-AGATGA
129 CTCTGCTTAGAAGAGCATTTTCAAGATGA
22369264 GATTTTTAAA
Statistics
Matches: 145, Mismatches: 9, Indels: 6
0.91 0.06 0.04
Matches are distributed among these distances:
158 12 0.08
159 85 0.59
160 34 0.23
161 14 0.10
ACGTcount: A:0.28, C:0.12, G:0.23, T:0.37
Consensus pattern (160 bp):
GCTTTTTCAAGATGAAAGTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTACAAGATGAAG
TTTAAAGTTATTGAGCCTCTACTTAGAGGAGCTTTTTCAAGATGAAGTTTAAAATTGTTGAGCCT
CTGCTTAGAAGAGCATTTTCAAGATGAAGT
Found at i:22369337 original size:44 final size:44
Alignment explanation
Indices: 22369128--22369441 Score: 244
Period size: 44 Copynumber: 6.9 Consensus size: 44
22369118 GATGAAGTTT
22369128 AAAGTTGTTGAGCCTCTGCTTAGAGGAG-CTTTTTCAAGATGAAGTTT--
1 AAAGTTGTTGAGCCTCTGCTTAGAGGAGCCTTTTT-AA-AT----TTTCA
* * **
22369175 AAAGTTATTGAGCCTCTGCTTAGAGGAG-CTTTTCAAGATGAGATTTTT
1 AAAGTTGTTGAGCCTCTGCTTAGAGGAGCCTTTTTAA-AT----TTTCA
* * * * *
22369223 AAAGTTGTTGAGCCTTTGCTTAGAAGAGCATTTTCAGATGAGATTTTTA
1 AAAGTTGTTGAGCCTCTGCTTAGAGGAGCCTTTT----T-AAATTTTCA
*
22369272 AAA-TTGTTGAGCCTCTACTTAGAGGAGCCTTTTTAAATTTTCA
1 AAAGTTGTTGAGCCTCTGCTTAGAGGAGCCTTTTTAAATTTTCA
* * *
22369315 AAAGTCGTTGAGCCTTTGCTTAGAGGAGCCTCTTTAAATTTTCA
1 AAAGTTGTTGAGCCTCTGCTTAGAGGAGCCTTTTTAAATTTTCA
* *
22369359 AAAATTATTGAGCCTCTGCTTAGAGGAGCC-TTTTAAATTTTCA
1 AAAGTTGTTGAGCCTCTGCTTAGAGGAGCCTTTTTAAATTTTCA
* * * * *
22369402 AAAGTGTCATTGAACCTCTGTTTGGAGGAACCTTTTTAAA
1 AAAGT-T-GTTGAGCCTCTGCTTAGAGGAGCCTTTTTAAA
22369442 AAAAAAAATG
Statistics
Matches: 224, Mismatches: 31, Indels: 25
0.80 0.11 0.09
Matches are distributed among these distances:
43 26 0.12
44 64 0.29
45 20 0.09
46 17 0.08
47 32 0.14
48 51 0.23
49 11 0.05
53 2 0.01
54 1 0.00
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (44 bp):
AAAGTTGTTGAGCCTCTGCTTAGAGGAGCCTTTTTAAATTTTCA
Found at i:22369383 original size:88 final size:89
Alignment explanation
Indices: 22369128--22369406 Score: 264
Period size: 95 Copynumber: 3.1 Consensus size: 89
22369118 GATGAAGTTT
* * * * * *
22369128 AAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGAAGTTT-AAAGTTATTGAGCCTCT
1 AAAGTCGTTGAGCCTTTGCTTAGAAGAGCATTTT-AAGA-G-ATTTTAAAAATTATTGAGCCTCT
* **
22369192 GCTTAGAGGAG-CTTTTCAAGATGAGATTTTT
63 GCTTAGAGGAGCCTTTTTAA-AT----TTTCA
* * *
22369223 AAAGTTGTTGAGCCTTTGCTTAGAAGAGCATTTTCAGATGAGATTTTTAAAATTGTTGAGCCTCT
1 AAAGTCGTTGAGCCTTTGCTTAGAAGAGCATTTT-A-A-GAGATTTTAAAAATTATTGAGCCTCT
*
22369288 ACTTAGAGGAGCCTTTTTAAATTTTCA
63 GCTTAGAGGAGCCTTTTTAAATTTTCA
* *
22369315 AAAGTCGTTGAGCCTTTGCTTAGAGGAGCCTCTTT-A-A-ATTTTCAAAAATTATTGAGCCTCTG
1 AAAGTCGTTGAGCCTTTGCTTAGAAGAGCAT-TTTAAGAGATTTT-AAAAATTATTGAGCCTCTG
22369377 CTTAGAGGAGCC-TTTTAAATTTTCA
64 CTTAGAGGAGCCTTTTTAAATTTTCA
22369402 AAAGT
1 AAAGT
22369407 GTCATTGAAC
Statistics
Matches: 162, Mismatches: 16, Indels: 20
0.82 0.08 0.10
Matches are distributed among these distances:
87 23 0.14
88 29 0.18
90 1 0.01
92 31 0.19
93 3 0.02
95 37 0.23
96 29 0.18
97 9 0.06
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (89 bp):
AAAGTCGTTGAGCCTTTGCTTAGAAGAGCATTTTAAGAGATTTTAAAAATTATTGAGCCTCTGCT
TAGAGGAGCCTTTTTAAATTTTCA
Found at i:22369874 original size:25 final size:26
Alignment explanation
Indices: 22369842--22369890 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
22369832 GGCACCAGAA
*
22369842 AAGAGAGA-TCGATTAAAAAAAAACC
1 AAGAGAGACTCGATAAAAAAAAAACC
*
22369867 AAGAGAGACTCTATAAAAAAAAAA
1 AAGAGAGACTCGATAAAAAAAAAA
22369891 GTATTTTGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.38
26 13 0.62
ACGTcount: A:0.63, C:0.10, G:0.14, T:0.12
Consensus pattern (26 bp):
AAGAGAGACTCGATAAAAAAAAAACC
Found at i:22370512 original size:16 final size:17
Alignment explanation
Indices: 22370485--22370516 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
22370475 CCAGACCGAA
22370485 CCGTTGGACCAAACCGC
1 CCGTTGGACCAAACCGC
22370502 CCGTT-GACCAAACCG
1 CCGTTGGACCAAACCG
22370517 TTGACTCAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.25, C:0.41, G:0.22, T:0.12
Consensus pattern (17 bp):
CCGTTGGACCAAACCGC
Found at i:22372826 original size:25 final size:25
Alignment explanation
Indices: 22372798--22372855 Score: 116
Period size: 25 Copynumber: 2.3 Consensus size: 25
22372788 CTCATAATCC
22372798 TATGCAAAACATTTTTTGTACTCCT
1 TATGCAAAACATTTTTTGTACTCCT
22372823 TATGCAAAACATTTTTTGTACTCCT
1 TATGCAAAACATTTTTTGTACTCCT
22372848 TATGCAAA
1 TATGCAAA
22372856 GAAACATAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.31, C:0.19, G:0.09, T:0.41
Consensus pattern (25 bp):
TATGCAAAACATTTTTTGTACTCCT
Found at i:22384869 original size:64 final size:65
Alignment explanation
Indices: 22384792--22384916 Score: 173
Period size: 64 Copynumber: 1.9 Consensus size: 65
22384782 TTTGAATTTT
*
22384792 TAAATTTTCCACCAATTT-GACCTTTTTAGAAATTCTATTTATTTAT-TATTTTTTTGTTGGTTT
1 TAAATTTTCCACC-ATTTGGACCTATTTAGAAATTCTATTTATTTATCTATTTTTTTGTTGGTTT
22384855 C
65 C
* * * * *
22384856 TAAATTTTTCACCATTTGGGCCTATTTAGAAATTCTTTTTATTTCTCTTTTTTTTTGTTGG
1 TAAATTTTCCACCATTTGGACCTATTTAGAAATTCTATTTATTTATCTATTTTTTTGTTGG
22384917 AAAGAAAATA
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
63 4 0.08
64 36 0.68
65 13 0.25
ACGTcount: A:0.21, C:0.13, G:0.10, T:0.57
Consensus pattern (65 bp):
TAAATTTTCCACCATTTGGACCTATTTAGAAATTCTATTTATTTATCTATTTTTTTGTTGGTTTC
Found at i:22389570 original size:9 final size:9
Alignment explanation
Indices: 22389551--22389605 Score: 71
Period size: 8 Copynumber: 6.2 Consensus size: 9
22389541 TGGGTGAAAG
22389551 AATGAAAAAA
1 AATG-AAAAA
22389561 AATG-AAAA
1 AATGAAAAA
22389569 AATGAAAAA
1 AATGAAAAA
22389578 AATG-AAAA
1 AATGAAAAA
22389586 AAT-AAAAA
1 AATGAAAAA
22389594 AGATGAAAAA
1 A-ATGAAAAA
22389604 AA
1 AA
22389606 GAGAAAAAGA
Statistics
Matches: 41, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
8 20 0.49
9 11 0.27
10 10 0.24
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (9 bp):
AATGAAAAA
Found at i:22389578 original size:17 final size:17
Alignment explanation
Indices: 22389545--22389604 Score: 86
Period size: 17 Copynumber: 3.5 Consensus size: 17
22389535 CAATAATGGG
*
22389545 TGAAAGAATGAAAAAAAA
1 TGAAAAAATG-AAAAAAA
22389563 TGAAAAAATGAAAAAAA
1 TGAAAAAATGAAAAAAA
22389580 TGAAAAAAT-AAAAAAGA
1 TGAAAAAATGAAAAAA-A
22389597 TGAAAAAA
1 TGAAAAAA
22389605 AGAGAAAAAG
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
16 6 0.15
17 25 0.62
18 9 0.22
ACGTcount: A:0.75, C:0.00, G:0.13, T:0.12
Consensus pattern (17 bp):
TGAAAAAATGAAAAAAA
Found at i:22390904 original size:21 final size:21
Alignment explanation
Indices: 22390867--22390920 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
22390857 GAATATTTTG
*
22390867 ATGA-AGTC-TTGATTTTCAA
1 ATGAGAGTCTTTGAATTTCAA
22390886 ATGAGAGTCTTTGAATTTCAA
1 ATGAGAGTCTTTGAATTTCAA
*
22390907 ATGAGAATCTTTGA
1 ATGAGAGTCTTTGA
22390921 GGTGTGAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.13
20 4 0.13
21 23 0.74
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (21 bp):
ATGAGAGTCTTTGAATTTCAA
Found at i:22390976 original size:79 final size:79
Alignment explanation
Indices: 22390882--22391079 Score: 254
Period size: 79 Copynumber: 2.5 Consensus size: 79
22390872 GTCTTGATTT
* * * *
22390882 TCAAATGAGAGTCTTTGAATTTCAAATGAGAATCTTTGAGGTGTGAAACCCAAAATTTGTCGAAT
1 TCAAATGAGAATCTTTGAATTTTAAATGAGAATCTTTGAAGTGTGAAACCCAAAATTTATCGAAT
22390947 GTGAAT-TTTCAAAC
66 GTGAATCTTT-AAAC
* * * *
22390961 TCAAATGAGAATCTTTGAGTTTTAAATGAAAATATTTGAAGTGTGAAACTCAAAATTTATCGAAT
1 TCAAATGAGAATCTTTGAATTTTAAATGAGAATCTTTGAAGTGTGAAACCCAAAATTTATCGAAT
*
22391026 GTGAATCTTTGAAC
66 GTGAATCTTTAAAC
*
22391040 TCATATGAGAATCTTTAAGAAATCTTTAAATGAGAATCTT
1 TCAAATGAGAATCTTT--G-AAT-TTTAAATGAGAATCTT
22391080 AGAATTCTTA
Statistics
Matches: 101, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
79 81 0.80
80 3 0.03
81 1 0.01
82 2 0.02
83 14 0.14
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.35
Consensus pattern (79 bp):
TCAAATGAGAATCTTTGAATTTTAAATGAGAATCTTTGAAGTGTGAAACCCAAAATTTATCGAAT
GTGAATCTTTAAAC
Found at i:22391053 original size:20 final size:21
Alignment explanation
Indices: 22391023--22391145 Score: 97
Period size: 20 Copynumber: 5.7 Consensus size: 21
22391013 AAATTTATCG
*
22391023 AATGTGAATCTTTGAA-CTCA
1 AATGAGAATCTTTGAATCTCA
* *
22391043 TATGAGAATCTTTAAGAAATCTTTA
1 AATGAGAATCTTT--G-AATC-TCA
* *
22391068 AATGAGAATCTTAGAATTCTTA
1 AATGAGAATCTTTGAA-TCTCA
*
22391090 AATGAGAATCTTCGAA-CTCA
1 AATGAGAATCTTTGAATCTCA
* *
22391110 AATGAGAATCTTTGAGTTTCA
1 AATGAGAATCTTTGAATCTCA
* *
22391131 AATAAGGATCTTTGA
1 AATGAGAATCTTTGA
22391146 GGTGTGTAAT
Statistics
Matches: 84, Mismatches: 12, Indels: 13
0.77 0.11 0.12
Matches are distributed among these distances:
20 28 0.33
21 16 0.19
22 21 0.25
23 5 0.06
24 1 0.01
25 13 0.15
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.35
Consensus pattern (21 bp):
AATGAGAATCTTTGAATCTCA
Found at i:22391093 original size:22 final size:21
Alignment explanation
Indices: 22391044--22391121 Score: 86
Period size: 22 Copynumber: 3.5 Consensus size: 21
22391034 TTGAACTCAT
22391044 ATGAGAATCTTTAAGAAATCTTTAA
1 ATGAGAATC-TT-AG-AATC-TTAA
22391069 ATGAGAATCTTAGAATTCTTAA
1 ATGAGAATCTTAGAA-TCTTAA
* *
22391091 ATGAGAATCTTCGAA-CTCAA
1 ATGAGAATCTTAGAATCTTAA
22391111 ATGAGAATCTT
1 ATGAGAATCTT
22391122 TGAGTTTCAA
Statistics
Matches: 50, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
20 15 0.30
22 20 0.40
23 4 0.08
24 2 0.04
25 9 0.18
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (21 bp):
ATGAGAATCTTAGAATCTTAA
Found at i:22391133 original size:21 final size:21
Alignment explanation
Indices: 22391067--22391146 Score: 72
Period size: 21 Copynumber: 3.8 Consensus size: 21
22391057 AGAAATCTTT
* * *
22391067 AAATGAGAATCTTAGAATTCTT
1 AAATGAGAATCTTTGAGTT-TC
* **
22391089 AAATGAGAATCTTCGA-ACTC
1 AAATGAGAATCTTTGAGTTTC
22391109 AAATGAGAATCTTTGAGTTTC
1 AAATGAGAATCTTTGAGTTTC
* *
22391130 AAATAAGGATCTTTGAG
1 AAATGAGAATCTTTGAG
22391147 GTGTGTAATC
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
20 16 0.33
21 17 0.35
22 15 0.31
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (21 bp):
AAATGAGAATCTTTGAGTTTC
Found at i:22391411 original size:16 final size:17
Alignment explanation
Indices: 22391380--22391414 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
22391370 CTTGCAAATG
22391380 CAAATATTGAAATCTTA
1 CAAATATTGAAATCTTA
*
22391397 CAAAT-TTGAATTCTTA
1 CAAATATTGAAATCTTA
22391413 CA
1 CA
22391415 TATCTACAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.37
Consensus pattern (17 bp):
CAAATATTGAAATCTTA
Found at i:22391669 original size:41 final size:41
Alignment explanation
Indices: 22391624--22391789 Score: 233
Period size: 42 Copynumber: 4.0 Consensus size: 41
22391614 TCCAAAATGG
*
22391624 TGGTGCCTCTGGTTAGATGAGCAATTTATTTTTCAAAGTTA
1 TGGTGCCTCTGTTTAGATGAGCAATTTATTTTTCAAAGTTA
* * *
22391665 TGGTGCCTCTGTTTAGAGGAGCATTTTATTTTTTAAAAGTTA
1 TGGTGCCTCTGTTTAGATGAGCAATTTA-TTTTTCAAAGTTA
* *
22391707 TGGTGCCTCTGTTTAGATGAGCATTTTATTTTTCAAAAGTTG
1 TGGTGCCTCTGTTTAGATGAGCAATTTATTTTTC-AAAGTTA
*
22391749 TGATGCCTCTGTTTAGATGAGCTTAATTTATTTTTCAAAGT
1 TGGTGCCTCTGTTTAGATGAGC--AATTTATTTTTCAAAGT
22391790 CGTTTAGCTT
Statistics
Matches: 112, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
41 30 0.27
42 66 0.59
43 5 0.04
44 11 0.10
ACGTcount: A:0.23, C:0.11, G:0.20, T:0.45
Consensus pattern (41 bp):
TGGTGCCTCTGTTTAGATGAGCAATTTATTTTTCAAAGTTA
Found at i:22391804 original size:43 final size:43
Alignment explanation
Indices: 22391627--22391831 Score: 172
Period size: 42 Copynumber: 4.8 Consensus size: 43
22391617 AAAATGGTGG
* ** *
22391627 TGCCTCTGGTTAGATGAGC--AATTTATTTTTCAAAGTTATGG
1 TGCCTCTGTTTAGATGAGCTTAATTTATTTTTCAAAGTCGTGA
* * * ** *
22391668 TGCCTCTGTTTAGAGGAGC--ATTTTATTTTTTAAAAGTTATGG
1 TGCCTCTGTTTAGATGAGCTTAATTTA-TTTTTCAAAGTCGTGA
* *
22391710 TGCCTCTGTTTAGATGAGC--ATTTTATTTTTCAAAAGTTGTGA
1 TGCCTCTGTTTAGATGAGCTTAATTTATTTTTC-AAAGTCGTGA
*
22391752 TGCCTCTGTTTAGATGAGCTTAATTTATTTTTCAAAGTCGT-T
1 TGCCTCTGTTTAGATGAGCTTAATTTATTTTTCAAAGTCGTGA
* * **
22391794 TAGCTTCTGTTTAGAGGAGCTTTGTTTACTTTTTCAAA
1 T-GCCTCTGTTTAGATGAGCTTAATTTA-TTTTTCAAA
22391832 AAAAAAAATA
Statistics
Matches: 143, Mismatches: 15, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
41 27 0.19
42 67 0.47
43 29 0.20
44 20 0.14
ACGTcount: A:0.23, C:0.12, G:0.20, T:0.45
Consensus pattern (43 bp):
TGCCTCTGTTTAGATGAGCTTAATTTATTTTTCAAAGTCGTGA
Found at i:22391998 original size:8 final size:7
Alignment explanation
Indices: 22391972--22391997 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
22391962 TATTAAATAA
22391972 AAAAATT
1 AAAAATT
22391979 AAAAATT
1 AAAAATT
22391986 AAAAATT
1 AAAAATT
22391993 AAAAA
1 AAAAA
22391998 AGGGTGATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (7 bp):
AAAAATT
Found at i:22394268 original size:23 final size:25
Alignment explanation
Indices: 22394236--22394282 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 25
22394226 CAAAAGATCA
22394236 CAAAAAGAA-GAAAAAA-AGAAAAG
1 CAAAAAGAAGGAAAAAAGAGAAAAG
*
22394259 CAAAATGAAGGAAAAAAGAGAAAA
1 CAAAAAGAAGGAAAAAAGAGAAAA
22394283 AGAAATGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 8 0.38
24 7 0.33
25 6 0.29
ACGTcount: A:0.74, C:0.04, G:0.19, T:0.02
Consensus pattern (25 bp):
CAAAAAGAAGGAAAAAAGAGAAAAG
Found at i:22394288 original size:24 final size:23
Alignment explanation
Indices: 22394237--22394291 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 23
22394227 AAAAGATCAC
*
22394237 AAAAAGAA-GAAAAAAAGAAAAG
1 AAAATGAAGGAAAAAAAGAAAAG
22394259 CAAAATGAAGGAAAAAAGAGAAAA-
1 -AAAATGAAGGAAAAAA-AGAAAAG
22394283 AGAAATGAA
1 A-AAATGAA
22394292 TGCCATGCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 8 0.29
24 14 0.50
25 6 0.21
ACGTcount: A:0.75, C:0.02, G:0.20, T:0.04
Consensus pattern (23 bp):
AAAATGAAGGAAAAAAAGAAAAG
Found at i:22395836 original size:67 final size:65
Alignment explanation
Indices: 22395693--22395838 Score: 161
Period size: 67 Copynumber: 2.2 Consensus size: 65
22395683 TCAAGGAAAA
* * * * *
22395693 TAGTAGCATTT-TATAAAAAGCATCACTAATTTAGTAGCATTTGTAAGAACAATTACAGTTAATT
1 TAGTAGCATTTGTATAAAAAACATCACTAATTTAGAAGCATTTATAAGAACAATCACAGCTAATT
** * *
22395757 TAGTAGTGTTTGTATCAAGAAAACATCACTAATTTA-AAGGCATTTATAAGCACAATCACTGCTA
1 TAGTAGCATTTGTAT-AA-AAAACATCACTAATTTAGAA-GCATTTATAAGAACAATCACAGCTA
22395821 ATT
63 ATT
*
22395824 TAGTGGCATTTGTAT
1 TAGTAGCATTTGTAT
22395839 TAGGAAACTG
Statistics
Matches: 66, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
64 9 0.14
65 3 0.05
66 3 0.05
67 51 0.77
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (65 bp):
TAGTAGCATTTGTATAAAAAACATCACTAATTTAGAAGCATTTATAAGAACAATCACAGCTAATT
Found at i:22396679 original size:21 final size:21
Alignment explanation
Indices: 22396655--22396696 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
22396645 ACGTTTGCAT
22396655 AGTTTGTAACTCCTCTCACAA
1 AGTTTGTAACTCCTCTCACAA
22396676 AGTTTGTAACTCCTCTCACAA
1 AGTTTGTAACTCCTCTCACAA
22396697 TATGAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.33
Consensus pattern (21 bp):
AGTTTGTAACTCCTCTCACAA
Found at i:22397977 original size:160 final size:161
Alignment explanation
Indices: 22397351--22398108 Score: 817
Period size: 161 Copynumber: 4.7 Consensus size: 161
22397341 TCATTCATGG
* * * * *
22397351 AAACCAAATTCAATAATTTGGACAAGTTTAATATAATGTATTGAAGCTATCCAAACTGTTAAAAC
1 AAACCAAGTTCAATCATTTGGAAAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAAT
*** * * * *
22397416 ATGGTGAATAACAGCAACTTTGTATTTTT-CCTTTTAGATG-CAAAAAAAGTCCTAAATAAAGGT
66 A-GAACAATAATAGCAAATTTGTATTTTTACCTTTTA-ATGACACAAAAAGTCCTAAATAGAGGT
* * *
22397479 AAACAACAACTTTGTCACATATACCAATTGTGA
129 AAACAACAACTTTTTCACATATATCAACTGTGA
* * * *
22397512 AAACCAAGTTCAATCATTTGAAAAAGTTTAATAGCATGTATTGAAGCTATCCAAACTGCTAAAAC
1 AAACCAAGTTCAATCATTTGGAAAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAAT
* * * * * **
22397577 AAAACAATAACAGTAAATTTGTATTTTTGCCTTTTAATGGCTTGAAAAA-TCCTAAATAGAGGTA
66 AGAACAATAATAGCAAATTTGTATTTTTACCTTTTAATGAC-ACAAAAAGTCCTAAATAGAGGTA
*
22397641 AACAACAACTTTTTCACATATA-CTAACTGCGA
130 AACAACAACTTTTTCACATATATC-AACTGTGA
*** ** * *
22397673 AAACCAAGTTCAATCATTCAAAAAAGTTTAATAAAATGTATTGAAGCCATCCAAACTATTAAAAT
1 AAACCAAGTTCAATCATTTGGAAAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAAT
* * * * * * * * *
22397738 AGAATAATAATGGCAAATTTTTATTTTTGCATTTTAACGACA-AAAATAATTCTAAATAGATGTA
66 AGAACAATAATAGCAAATTTGTATTTTTACCTTTTAATGACACAAAA-AGTCCTAAATAGAGGTA
* *
22397802 AACGATAACTTTTTCACATATATCAACTGTGA
130 AACAACAACTTTTTCACATATATCAACTGTGA
* *
22397834 AAACCAAGTTCAATCATTCGGACAAGTTTAATATCATGTATTG-AGCTATCCAAACTGTTAAAAT
1 AAACCAAGTTCAATCATTTGGAAAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAAT
* * *
22397898 AGAACAATAATAGCAAATTTGTATTATTACCTATTAATGACACAAAAAGTCCTAAATAGATGTAA
66 AGAACAATAATAGCAAATTTGTATTTTTACCTTTTAATGACACAAAAAGTCCTAAATAGAGGTAA
* * * * *
22397963 ACAATAACTTTTTCATACATATCAACCGTGG
131 ACAACAACTTTTTCACATATATCAACTGTGA
* * * * * * *
22397994 AAACTAAGTTCAATAATTTGGATAAGTTTAATATCATGTACTGAAACTATCAAAACTATTAAAAT
1 AAACCAAGTTCAATCATTTGGAAAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAAT
* * * * * *
22398059 AGAACAATAATTGTAAATTTGCATTTTTATCTTGTAATGGCACAAAAAGT
66 AGAACAATAATAGCAAATTTGTATTTTTACCTTTTAATGACACAAAAAGT
22398109 TGTAAACAGA
Statistics
Matches: 508, Mismatches: 80, Indels: 18
0.84 0.13 0.03
Matches are distributed among these distances:
159 4 0.01
160 159 0.31
161 339 0.67
162 6 0.01
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (161 bp):
AAACCAAGTTCAATCATTTGGAAAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAAT
AGAACAATAATAGCAAATTTGTATTTTTACCTTTTAATGACACAAAAAGTCCTAAATAGAGGTAA
ACAACAACTTTTTCACATATATCAACTGTGA
Found at i:22398052 original size:321 final size:320
Alignment explanation
Indices: 22397329--22398086 Score: 862
Period size: 321 Copynumber: 2.4 Consensus size: 320
22397319 GCATTTTGGC
** * * *
22397329 TTTTCACACATATCATTCATGGAAACCAAATTCAATAATTTGGACAAGTTTAATATAATGTATTG
1 TTTTCA-ACATATCAACCGTGGAAACCAAGTTCAATAATTTGGAAAAGTTTAATATAATGTATTG
* * * * * * *
22397394 AAGCTATCCAAACTGTTAAAACATG-GTGAATAACAGCAACTTTGTATTTTTCCTTTTAGATGCA
65 AAGCTATCCAAACTATTAAAATA-GAAT-AATAATAGCAAATTTGTATTTTTCATTTTAGACGCA
*
22397458 AAAAAAGTCCTAAATAAAGGTAAACAACAACTTTGTCACATATACCAATTGTGAAAACCAAGTTC
128 AAAAAAGTCCTAAATAAAGGTAAACAACAACTTTGTCACATATACCAACTGTGAAAACCAAGTTC
*
22397523 AATCATTTGAAAAAGTTTAATAGCATGTATTGAAGCTATCCAAACTGCTAAAACAAAACAATAAC
193 AATCATTCGAAAAAGTTTAATAGCATGTATTGAAGCTATCCAAACTGCTAAAACAAAACAATAAC
* * * * * **
22397588 AGTAAATTTGTATTTTTGCCTTTTAATGGCTTGAAAAATCCTAAATAGAGGTAAACAACAACT
258 AGCAAATTTGTATTATTACCTATTAATGACTACAAAAATCCTAAATAGAGGTAAACAACAACT
* * * * *** *
22397651 TTTTC-ACATATACTAACTGCGAAAACCAAGTTCAATCATTCAAAAAAGTTTAATAAAATGTATT
1 TTTTCAACATAT-C-AACCGTGGAAACCAAGTTCAATAATTTGGAAAAGTTTAATATAATGTATT
* * *
22397715 GAAGCCATCCAAACTATTAAAATAGAATAATAATGGCAAATTTTTATTTTTGCATTTTA-ACGAC
64 GAAGCTATCCAAACTATTAAAATAGAATAATAATAGCAAATTTGTATTTTT-CATTTTAGACG-C
* * * * * * *
22397779 AAAAATAA-TTCTAAATAGATGTAAACGATAACTTTTTCACATATATCAACTGTGAAAACCAAGT
127 AAAAA-AAGTCCTAAATAAAGGTAAACAACAACTTTGTCACATATACCAACTGTGAAAACCAAGT
* * * * * *
22397843 TCAATCATTCGGACAAGTTTAATATCATGTATTG-AGCTATCCAAACTGTTAAAATAGAACAATA
191 TCAATCATTCGAAAAAGTTTAATAGCATGTATTGAAGCTATCCAAACTGCTAAAACAAAACAATA
* * *
22397907 ATAGCAAATTTGTATTATTACCTATTAATGAC-ACAAAAAGTCCTAAATAGATGTAAACAATAAC
256 ACAGCAAATTTGTATTATTACCTATTAATGACTACAAAAA-TCCTAAATAGAGGTAAACAACAAC
22397971 T
320 T
* * * *
22397972 TTTTCATACATATCAACCGTGGAAACTAAGTTCAATAATTTGGATAAGTTTAATATCATGTACTG
1 TTTTCA-ACATATCAACCGTGGAAACCAAGTTCAATAATTTGGAAAAGTTTAATATAATGTATTG
* * * * * *
22398037 AAACTATCAAAACTATTAAAATAGAACAATAATTGTAAATTTGCATTTTT
65 AAGCTATCCAAACTATTAAAATAGAATAATAATAGCAAATTTGTATTTTT
22398087 ATCTTGTAAT
Statistics
Matches: 359, Mismatches: 68, Indels: 19
0.80 0.15 0.04
Matches are distributed among these distances:
320 11 0.03
321 185 0.52
322 155 0.43
323 8 0.02
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.32
Consensus pattern (320 bp):
TTTTCAACATATCAACCGTGGAAACCAAGTTCAATAATTTGGAAAAGTTTAATATAATGTATTGA
AGCTATCCAAACTATTAAAATAGAATAATAATAGCAAATTTGTATTTTTCATTTTAGACGCAAAA
AAAGTCCTAAATAAAGGTAAACAACAACTTTGTCACATATACCAACTGTGAAAACCAAGTTCAAT
CATTCGAAAAAGTTTAATAGCATGTATTGAAGCTATCCAAACTGCTAAAACAAAACAATAACAGC
AAATTTGTATTATTACCTATTAATGACTACAAAAATCCTAAATAGAGGTAAACAACAACT
Found at i:22403642 original size:3 final size:3
Alignment explanation
Indices: 22403634--22403668 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
22403624 CCATTTTGTT
22403634 TTA TTA TTA TTA TTA TTA TTA TTA TT- TTA TATA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TT
22403669 TTTTTCTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 25 0.83
4 3 0.10
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:22403669 original size:9 final size:8
Alignment explanation
Indices: 22403632--22403670 Score: 51
Period size: 9 Copynumber: 4.5 Consensus size: 8
22403622 TACCATTTTG
22403632 TTTTATTA
1 TTTTATTA
22403640 TTATTATTA
1 TT-TTATTA
22403649 TTATTATTA
1 TT-TTATTA
22403658 TTTTATATA
1 TTTTAT-TA
22403667 TTTT
1 TTTT
22403671 TTTCTTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
8 6 0.21
9 23 0.79
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (8 bp):
TTTTATTA
Found at i:22403680 original size:7 final size:7
Alignment explanation
Indices: 22403668--22403719 Score: 50
Period size: 8 Copynumber: 7.0 Consensus size: 7
22403658 TTTTATATAT
22403668 TTTTTTC
1 TTTTTTC
22403675 TTTTTTC
1 TTTTTTC
* *
22403682 TTTCTTA
1 TTTTTTC
*
22403689 TTTATTTA
1 TTT-TTTC
22403697 TTTATTTC
1 TTT-TTTC
22403705 TTTCTTTC
1 TTT-TTTC
22403713 TTTTTTC
1 TTTTTTC
22403720 CTTCTTTTTC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
7 19 0.49
8 20 0.51
ACGTcount: A:0.08, C:0.13, G:0.00, T:0.79
Consensus pattern (7 bp):
TTTTTTC
Found at i:22403701 original size:38 final size:37
Alignment explanation
Indices: 22403659--22403738 Score: 97
Period size: 38 Copynumber: 2.1 Consensus size: 37
22403649 TTATTATTAT
* *
22403659 TTTATATATTTTTTTCTTTTTTCTTTCTTATTTATTTA
1 TTTATATATTTCTTTCTTTTTTCCTTCTT-TTTATTTA
* * *
22403697 TTTATTTCTTTCTTTCTTTTTTCCTTCTTTTTCTTTA
1 TTTATATATTTCTTTCTTTTTTCCTTCTTTTTATTTA
*
22403734 CTTAT
1 TTTAT
22403739 CTAGTTCAGT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
37 11 0.31
38 25 0.69
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.75
Consensus pattern (37 bp):
TTTATATATTTCTTTCTTTTTTCCTTCTTTTTATTTA
Found at i:22403889 original size:23 final size:23
Alignment explanation
Indices: 22403863--22403911 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
22403853 TTTTGGGTTG
* *
22403863 AAAATGTGGGATTCGAATCCCAA
1 AAAATCTGAGATTCGAATCCCAA
*
22403886 AAAATCTGAGATTTGAATCCCAA
1 AAAATCTGAGATTCGAATCCCAA
22403909 AAA
1 AAA
22403912 GCTCTATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.45, C:0.16, G:0.16, T:0.22
Consensus pattern (23 bp):
AAAATCTGAGATTCGAATCCCAA
Found at i:22404852 original size:21 final size:23
Alignment explanation
Indices: 22404826--22404876 Score: 72
Period size: 21 Copynumber: 2.3 Consensus size: 23
22404816 GTTAATTTTT
22404826 AAAATAAACTTTAA-AA-AATA-A
1 AAAATAAAC-TTAATAATAATACA
22404847 AAAATAAACTTAATAATAATACA
1 AAAATAAACTTAATAATAATACA
22404870 AAAATAA
1 AAAATAA
22404877 TAAAAATGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.15
21 11 0.41
22 4 0.15
23 8 0.30
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.24
Consensus pattern (23 bp):
AAAATAAACTTAATAATAATACA
Found at i:22415061 original size:18 final size:19
Alignment explanation
Indices: 22415040--22415081 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
22415030 TTTTGCTTTA
*
22415040 AAAAAAAGAGAAAAAAA-G
1 AAAAAAAGACAAAAAAATG
*
22415058 AAAAAAAGTCAAAAAAATG
1 AAAAAAAGACAAAAAAATG
22415077 AAAAA
1 AAAAA
22415082 TGAAAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.81, C:0.02, G:0.12, T:0.05
Consensus pattern (19 bp):
AAAAAAAGACAAAAAAATG
Found at i:22415942 original size:52 final size:50
Alignment explanation
Indices: 22415876--22416456 Score: 459
Period size: 50 Copynumber: 11.8 Consensus size: 50
22415866 ATAGATGGAC
*
22415876 TTTTAAAGTTGTTGAACCTCTGCTTAGAGGAGCTTTTTTAAGATGAGAATT
1 TTTTAAAGTTGTTGAACCTCTGCTTAGAGGAGCTTTTTCAAGATGAGAA-T
* * * * * *
22415927 TATTTAAAGTTGTTGAGCTTATGCTGAGATGAGTTTTTTCAAGATGAGAATT
1 T-TTTAAAGTTGTTGAACCTCTGCTTAGAGGAGCTTTTTCAAGATGAGAA-T
*
22415979 TCTTTAAAGTTGTTGAACCTCTGCTTATAGGAGC-TTTTCTAAGATGAG-AT
1 T-TTTAAAGTTGTTGAACCTCTGCTTAGAGGAGCTTTTTC-AAGATGAGAAT
* * * * *
22416029 TTTTAAAGTTGTTGAGCCTTTGTTTAGAGGAGCTTTTCCAGGATGATGAA-
1 TTTTAAAGTTGTTGAACCTCTGCTTAGAGGAGCTTTTTCAAGATGA-GAAT
* * * * *
22416079 TTTCAAAGTTGTTGAGCCTCT-ATTGAGAGGAGCTTTTCCAGGATGATGAA-
1 TTTTAAAGTTGTTGAACCTCTGCTT-AGAGGAGCTTTTTCAAGATGA-GAAT
* * * *
22416129 TTTTAAAATTGTT-AAGCCTCTGCTGAGAGGAGCTTTTTCAAGATAAAAATT
1 TTTTAAAGTTGTTGAA-CCTCTGCTTAGAGGAGCTTTTTCAAGATGAGAA-T
* * * * *
22416180 TCTTTAAAATTGCTAAACCTCTACTTAGAGGAGCTTTTTCGAGATGAG-AT
1 T-TTTAAAGTTGTTGAACCTCTGCTTAGAGGAGCTTTTTCAAGATGAGAAT
* * * *
22416230 TTTTAAAGTTGTT-AAGCCTCTGCTTAGAAGAGCTTTTCCAGGATAATGAA-
1 TTTTAAAGTTGTTGAA-CCTCTGCTTAGAGGAGCTTTTTCAAGATGA-GAAT
* * **
22416280 TTTTAAAGTTGTTGAGCCTCTACTTAGATAAGCTTTTTCAAGAT-AGAA-
1 TTTTAAAGTTGTTGAACCTCTGCTTAGAGGAGCTTTTTCAAGATGAGAAT
* * *
22416328 -TTTAAAGTTGTTGAGCCTCTGCTTAGAGAAGCCTTTTT--ACAT-----T
1 TTTTAAAGTTGTTGAACCTCTGCTTAGAGGAG-CTTTTTCAAGATGAGAAT
** * * *
22416371 TTCAAAAGTCGTTGAACTTCTGCTTAGATGAGCTTTTTCAAGATG-G-A-
1 TTTTAAAGTTGTTGAACCTCTGCTTAGAGGAGCTTTTTCAAGATGAGAAT
* * *
22416418 TTTTAAAGTTGTTGAGCTTCTGCTTAGATGAGCCTTTTT
1 TTTTAAAGTTGTTGAACCTCTGCTTAGAGGAG-CTTTTT
22416457 AAATTTTCAA
Statistics
Matches: 437, Mismatches: 68, Indels: 53
0.78 0.12 0.09
Matches are distributed among these distances:
43 6 0.01
44 24 0.05
45 3 0.01
46 3 0.01
47 57 0.13
48 17 0.04
49 74 0.17
50 124 0.28
51 13 0.03
52 114 0.26
53 2 0.00
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.39
Consensus pattern (50 bp):
TTTTAAAGTTGTTGAACCTCTGCTTAGAGGAGCTTTTTCAAGATGAGAAT
Found at i:22416227 original size:201 final size:199
Alignment explanation
Indices: 22415880--22416365 Score: 609
Period size: 201 Copynumber: 2.4 Consensus size: 199
22415870 ATGGACTTTT
* * *
22415880 AAAGTTGTTGAACCTCTGCTTAGAGGAGCTTTTTTAAGATGAGAATTTATTTAAAGTTGTTGAGC
1 AAAGTTGTTGAGCCTCT-ATTAGAGGAGCTTTTTCAAGATGAGAA--T-TTTAAAGTTGTTGAGC
* * * * * * * * * * *
22415945 TTATGCTGAGATGAGTTTTTTCAAGATGAGAATTTCTTTAAAGTTGTTGAACCTCTGCTTATAGG
62 CTCTGCTGAGAGGAGCTTTTTCAAGATAAAAATTTCTTTAAAATTGCTAAACCTCTACTTAGAGG
* * * * *
22416010 AGCTTTTCTAAGATGAGATTTTTAAAGTTGTTGAGCCTTTGTTTAGAGGAGCTTTTCCAGGATGA
127 AGCTTTTCTAAGATGAGATTTTTAAAGTTGTTAAGCCTCTGCTTAGAAGAGCTTTTCCAGGATAA
22416075 TGAATTTC
192 TGAATTTC
* * * *
22416083 AAAGTTGTTGAGCCTCTATTGAGAGGAGCTTTTCCAGGATGATGAATTTTAAAATTGTTAAGCCT
1 AAAGTTGTTGAGCCTCTATT-AGAGGAGCTTTTTCAAGATGA-GAATTTTAAAGTTGTTGAGCCT
22416148 CTGCTGAGAGGAGCTTTTTCAAGATAAAAATTTCTTTAAAATTGCTAAACCTCTACTTAGAGGAG
64 CTGCTGAGAGGAGCTTTTTCAAGATAAAAATTTCTTTAAAATTGCTAAACCTCTACTTAGAGGAG
*
22416213 CTTTT-TCGAGATGAGATTTTTAAAGTTGTTAAGCCTCTGCTTAGAAGAGCTTTTCCAGGATAAT
129 CTTTTCT-AAGATGAGATTTTTAAAGTTGTTAAGCCTCTGCTTAGAAGAGCTTTTCCAGGATAAT
*
22416277 GAATTTT
193 GAATTTC
**
22416284 AAAGTTGTTGAGCCTCTACTTAGATAAGCTTTTTCAAGAT-AGAA-TTTAAAGTTGTTGAGCCTC
1 AAAGTTGTTGAGCCTCTA-TTAGAGGAGCTTTTTCAAGATGAGAATTTTAAAGTTGTTGAGCCTC
* *
22416347 TGCTTAGAGAAGCCTTTTT
65 TGCTGAGAGGAG-CTTTTT
22416366 ACATTTTCAA
Statistics
Matches: 245, Mismatches: 33, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
198 27 0.11
199 9 0.04
200 2 0.01
201 165 0.67
202 5 0.02
203 34 0.14
204 3 0.01
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.38
Consensus pattern (199 bp):
AAAGTTGTTGAGCCTCTATTAGAGGAGCTTTTTCAAGATGAGAATTTTAAAGTTGTTGAGCCTCT
GCTGAGAGGAGCTTTTTCAAGATAAAAATTTCTTTAAAATTGCTAAACCTCTACTTAGAGGAGCT
TTTCTAAGATGAGATTTTTAAAGTTGTTAAGCCTCTGCTTAGAAGAGCTTTTCCAGGATAATGAA
TTTC
Found at i:22416282 original size:151 final size:152
Alignment explanation
Indices: 22416052--22416324 Score: 390
Period size: 151 Copynumber: 1.8 Consensus size: 152
22416042 GAGCCTTTGT
* *
22416052 TTAGAGGAGCTTTTCCAGGATGATGAATTTCAAAGTTGTTGAGCCTCTATTGAGAGGAGCTTTTC
1 TTAGAGGAGCTTTTCCAGGATGATGAATTTCAAAGTTGTTAAGCCTCTATTGAGAAGAGCTTTTC
* * *
22416117 CAGGATGATGAATTTTAAAATTGTTAAGCCTCTGCTGAGAGGAGCTTTTTCAAGATAAAAATTTC
66 CAGGATAATGAATTTTAAAATTGTTAAGCCTCTACTGAGAGAAGCTTTTTCAAGATAAAAATTTC
22416182 TTTAAAATTGCTAAACCTCTAC
131 TTTAAAATTGCTAAACCTCTAC
* * * *
22416204 TTAGAGGAGCTTTTTC-GAGATGA-GATTTTTAAAGTTGTTAAGCCTCTGCTT-AGAAGAGCTTT
1 TTAGAGGAGCTTTTCCAG-GATGATGAATTTCAAAGTTGTTAAGCCTCT-ATTGAGAAGAGCTTT
* * * *
22416266 TCCAGGATAATGAATTTTAAAGTTGTTGAGCCTCTACTTAGATAAGCTTTTTCAAGATA
64 TCCAGGATAATGAATTTTAAAATTGTTAAGCCTCTACTGAGAGAAGCTTTTTCAAGATA
22416325 GAATTTAAAG
Statistics
Matches: 106, Mismatches: 13, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
151 84 0.79
152 22 0.21
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.36
Consensus pattern (152 bp):
TTAGAGGAGCTTTTCCAGGATGATGAATTTCAAAGTTGTTAAGCCTCTATTGAGAAGAGCTTTTC
CAGGATAATGAATTTTAAAATTGTTAAGCCTCTACTGAGAGAAGCTTTTTCAAGATAAAAATTTC
TTTAAAATTGCTAAACCTCTAC
Found at i:22416394 original size:44 final size:44
Alignment explanation
Indices: 22416331--22416511 Score: 174
Period size: 44 Copynumber: 4.1 Consensus size: 44
22416321 GATAGAATTT
* *
22416331 AAAGTTGTTGAGCCTCTGCTTAGA-GAAGCCTTTTTACATTTTCA
1 AAAGTTGTTGAGCTTCTGCTTAGATG-AGCCTTTTTAAATTTTCA
* * *
22416375 AAAGTCGTTGAACTTCTGCTTAGATGAG-CTTTTTCAAGATGGATTT-T
1 AAAGTTGTTGAGCTTCTGCTTAGATGAGCCTTTTT-AA-AT---TTTCA
22416422 AAAGTTGTTGAGCTTCTGCTTAGATGAGCCTTTTTAAATTTTCA
1 AAAGTTGTTGAGCTTCTGCTTAGATGAGCCTTTTTAAATTTTCA
* * * * *
22416466 AAAGTTCTTGAGCCTT-TGCTCAGAGGAG-CTTTGTAAATTTTTA
1 AAAGTTGTTGAG-CTTCTGCTTAGATGAGCCTTTTTAAATTTTCA
22416509 AAA
1 AAA
22416512 ATGTTGTTAA
Statistics
Matches: 115, Mismatches: 13, Indels: 19
0.78 0.09 0.13
Matches are distributed among these distances:
43 25 0.22
44 45 0.39
45 6 0.05
46 2 0.02
47 28 0.24
48 9 0.08
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (44 bp):
AAAGTTGTTGAGCTTCTGCTTAGATGAGCCTTTTTAAATTTTCA
Found at i:22416409 original size:91 final size:91
Alignment explanation
Indices: 22416284--22416470 Score: 277
Period size: 91 Copynumber: 2.1 Consensus size: 91
22416274 AATGAATTTT
* *
22416284 AAAGTTGTTGAGCCTCTACTTAGATAAGCTTTTTCAAGATAGAATTTAAAGTTGTTGAGCCTCTG
1 AAAGTCGTTGAACCTCTACTTAGATAAGCTTTTTCAAGATAGAATTTAAAGTTGTTGAGCCTCTG
*
22416349 CTTAGA-GAAGCCTTTTTACATTTTCA
66 CTTAGATG-AGCCTTTTTAAATTTTCA
* * * * * *
22416375 AAAGTCGTTGAACTTCTGCTTAGATGAGCTTTTTCAAGATGGATTTTAAAGTTGTTGAGCTTCTG
1 AAAGTCGTTGAACCTCTACTTAGATAAGCTTTTTCAAGATAGAATTTAAAGTTGTTGAGCCTCTG
22416440 CTTAGATGAGCCTTTTTAAATTTTCA
66 CTTAGATGAGCCTTTTTAAATTTTCA
22416466 AAAGT
1 AAAGT
22416471 TCTTGAGCCT
Statistics
Matches: 86, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
91 85 0.99
92 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.40
Consensus pattern (91 bp):
AAAGTCGTTGAACCTCTACTTAGATAAGCTTTTTCAAGATAGAATTTAAAGTTGTTGAGCCTCTG
CTTAGATGAGCCTTTTTAAATTTTCA
Found at i:22416495 original size:91 final size:91
Alignment explanation
Indices: 22416310--22416497 Score: 265
Period size: 91 Copynumber: 2.1 Consensus size: 91
22416300 TACTTAGATA
*
22416310 AGCTTTTTCAAGATAGAATTTAAAGTTGTTGAGCCTCTGCTTAGAGAAGCCTTTTTACATTTTCA
1 AGCTTTTTCAAGATAGAATTTAAAGTTGTTGAGCCTCTGCTTAGAGAAGCCTTTTTAAATTTTCA
* *
22416375 AAAGTCGTTGAACTTCTGCTTAGATG
66 AAAGTCGTTGAACTTCTGCTCAGAGG
* * *
22416401 AGCTTTTTCAAGATGGATTTTAAAGTTGTTGAGCTTCTGCTTAGATG-AGCCTTTTTAAATTTTC
1 AGCTTTTTCAAGATAGAATTTAAAGTTGTTGAGCCTCTGCTTAGA-GAAGCCTTTTTAAATTTTC
*
22416465 AAAAGTTC-TTGAGCCTT-TGCTCAGAGG
65 AAAAG-TCGTTGA-ACTTCTGCTCAGAGG
22416492 AGCTTT
1 AGCTTT
22416498 GTAAATTTTT
Statistics
Matches: 87, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
91 81 0.93
92 6 0.07
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.40
Consensus pattern (91 bp):
AGCTTTTTCAAGATAGAATTTAAAGTTGTTGAGCCTCTGCTTAGAGAAGCCTTTTTAAATTTTCA
AAAGTCGTTGAACTTCTGCTCAGAGG
Found at i:22416693 original size:4 final size:4
Alignment explanation
Indices: 22416684--22416713 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
22416674 ATTATTATTT
22416684 TTTC TTTC -TTC TTTC TTTC TTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT
22416714 TTCCTTCTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 22 0.88
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTC
Found at i:22416708 original size:19 final size:18
Alignment explanation
Indices: 22416684--22416722 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
22416674 ATTATTATTT
*
22416684 TTTCTTTCTTCTTTCTTTC
1 TTTCTTTCTT-TTTCCTTC
22416703 TTTCTTTCTTTTTCCTTC
1 TTTCTTTCTTTTTCCTTC
22416721 TT
1 TT
22416723 CTTATTTCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTCTTTCTTTTTCCTTC
Found at i:22417049 original size:22 final size:22
Alignment explanation
Indices: 22416992--22417049 Score: 62
Period size: 24 Copynumber: 2.5 Consensus size: 22
22416982 CTCGAAACCC
*
22416992 TGCCAAAAACAAAAAAAAAGTT
1 TGCCAAAAAAAAAAAAAAAGTT
* *
22417014 TGCCAAATTCAAAAAAAAAAATTT
1 TGCCAAA--AAAAAAAAAAAAGTT
*
22417038 TGTCAAAAAAAA
1 TGCCAAAAAAAA
22417050 TCCAAAACAA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
22 11 0.38
24 18 0.62
ACGTcount: A:0.62, C:0.12, G:0.07, T:0.19
Consensus pattern (22 bp):
TGCCAAAAAAAAAAAAAAAGTT
Found at i:22417853 original size:20 final size:22
Alignment explanation
Indices: 22417828--22417877 Score: 68
Period size: 20 Copynumber: 2.3 Consensus size: 22
22417818 GTTAATTTTT
22417828 AAAATAAACTT-TAAAAATA-A
1 AAAATAAACTTATAAAAATACA
*
22417848 AAAATAAACTTAATAATAATACA
1 AAAATAAACTT-ATAAAAATACA
22417871 AAAATAA
1 AAAATAA
22417878 TAAAAATGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 11 0.42
22 7 0.27
23 8 0.31
ACGTcount: A:0.70, C:0.06, G:0.00, T:0.24
Consensus pattern (22 bp):
AAAATAAACTTATAAAAATACA
Found at i:22418565 original size:22 final size:22
Alignment explanation
Indices: 22418538--22418584 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
22418528 AATAAAAATG
*
22418538 AAACAATAAATAATAAATAGAA
1 AAACAATAAATAATAAATAAAA
***
22418560 AAACAATTTCTAATAAATAAAA
1 AAACAATAAATAATAAATAAAA
22418582 AAA
1 AAA
22418585 TCAAGAAACT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.70, C:0.06, G:0.02, T:0.21
Consensus pattern (22 bp):
AAACAATAAATAATAAATAAAA
Found at i:22419543 original size:63 final size:63
Alignment explanation
Indices: 22419476--22420331 Score: 283
Period size: 63 Copynumber: 13.5 Consensus size: 63
22419466 ATTAAAGTTA
* * * *
22419476 TTTTTAGTCACAAATGCATTCAATAATCCCCTAAAAAATTTTAAAGGAAATTATTGAATGCATT
1 TTTTTAGTCAAAAATGCCTTCAATAATCCCCTAAAAATTTTTAAAGGAAATTATTGAAGGCA-T
* * * ** ** * * ** *
22419540 TTTTTA-TAAAAAATACCTTCAATAATTCAGTCCAACTTTTTATCAGGGGATTATTTAAGGCA-
1 TTTTTAGTCAAAAATGCCTTCAATAATCCCCTAAAAATTTTTA-AAGGAAATTATTGAAGGCAT
* * *
22419602 TTTTTAGTCAAAAATGCCTTCAGTAATCCCCTAAAAATTTTTGAAA-AAAATTATTGAAGGCGT
1 TTTTTAGTCAAAAATGCCTTCAATAATCCCCTAAAAATTTTT-AAAGGAAATTATTGAAGGCAT
* * ** * * *
22419665 TTTCTA-T-AGAAAATGCCTTCAATAATCCACTCCAATTTTTTATCACGG-GATTATTGAAGGC-
1 TTTTTAGTCA-AAAATGCCTTCAATAATCCCCTAAAAATTTTTA--AAGGAAATTATTGAAGGCA
*
22419726 G
63 T
* * * *
22419727 TTTTTAGTGACAAATGCCATT-AATAATCCCTTGAAAAA-TTTTAAAGAAAATTATTGAAGGTGT
1 TTTTTAGTCAAAAATGCC-TTCAATAATCCCCT-AAAAATTTTTAAAGGAAATTATTGAA-G-G-
**
22419790 TTTTT
61 --CAT
* *** ** * ** ** *
22419795 TTTTTTGT-AGAAAATGCCTTCAATAATCTAGTGTAATTTTTTATCGGGGGATTATTGAAAGCA-
1 TTTTTAGTCA-AAAATGCCTTCAATAATCCCCTAAAAATTTTTA-AAGGAAATTATTGAAGGCAT
* * ** * *
22419858 TTTTTGGACTAAAAACCCCTTCAATAATCCCTTGAAAAA-TTTTAAAAGAAATTATTGAAGGCAT
1 TTTTTAGTC-AAAAATGCCTTCAATAATCCCCT-AAAAATTTTTAAAGGAAATTATTGAAGGCA-
22419922 TT
63 -T
** * * ** * **
22419924 TTTTTTTTCAAAAAACGCCTTCAATAATCTCCT-TCAATTTTTATTAGGGGATTATTGAAGGCA-
1 TTTTTAGTC-AAAAATGCCTTCAATAATCCCCTAAAAATTTTTA-AAGGAAATTATTGAAGGCAT
* * * * * *
22419987 TTTTTAGT-AACAAACGCATTCAATAATTCCCAAAAAATTTCTAAAGAAAATTATTGAAGGCATT
1 TTTTTAGTCAA-AAATGCCTTCAATAATCCCCTAAAAATTTTTAAAGGAAATTATTGAAGGCA--
22420051 TT
63 -T
* * *** ** * **
22420053 TTTTTTGT-AGAAAATGCCTTTAATAATCAAGT-CCAATTTTTGATCAGGGGATTATTGAA-G-A
1 TTTTTAGTCA-AAAATGCCTTCAATAATCCCCTAAAAATTTTT-A-AAGGAAATTATTGAAGGCA
22420114 T
63 T
* ** * * *
22420115 GTTTTTAGACTAAAAATATCTTCAATAATCCCTTAAAAA-TTTTGAAGGAAATTATTGAAGGTAT
1 -TTTTTAGTC-AAAAATGCCTTCAATAATCCCCTAAAAATTTTTAAAGGAAATTATTGAAGGCAT
** * ** * * ** * *
22420179 TTTTT-GT-AGAAAACACATTCAATAATCCCCTCTAATTTTTTATCAGGGGATTACTGAAAGCAT
1 TTTTTAGTCA-AAAATGCCTTCAATAATCCCCTAAAAATTTTTA-AAGGAAATTATTGAAGGCAT
* * * * **
22420242 TTTTT-GT-AGAAAATACCTTCAATAATCTCCTTTAAAAA--TTCATAGGGGATTATTGAAGG--
1 TTTTTAGTCA-AAAATGCCTTCAATAATC-CC-CTAAAAATTTTTAAAGGAAATTATTGAAGGCA
22420301 T
63 T
* *
22420302 GTTGTTAGTGAAAAATGCCTTCAATAATCC
1 -TTTTTAGTCAAAAATGCCTTCAATAATCC
22420332 AATGATAAAA
Statistics
Matches: 570, Mismatches: 168, Indels: 111
0.67 0.20 0.13
Matches are distributed among these distances:
60 2 0.00
61 31 0.05
62 142 0.25
63 180 0.32
64 75 0.13
65 21 0.04
66 64 0.11
67 18 0.03
68 27 0.05
69 10 0.02
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (63 bp):
TTTTTAGTCAAAAATGCCTTCAATAATCCCCTAAAAATTTTTAAAGGAAATTATTGAAGGCAT
Found at i:22419725 original size:125 final size:124
Alignment explanation
Indices: 22419283--22420332 Score: 777
Period size: 125 Copynumber: 8.3 Consensus size: 124
22419273 TACATTTAAC
* ** * * * * **
22419283 ATTATTGAAGGTGTCTTTTACTA-AAAATGCCTTTAATAATCCCCTTCAATTTTTTAAACA--AT
1 ATTATTGAAGGCGT-TTTTTGTAGAAAATGCCTTCAATAATCCACTCCAATTTTTT-ATCAGGGG
* * *
22419345 ATTATTGAAGGTATTTTTAGTCAAAAATGCCTTCCATAAT--CC----AATTTTAAAGGAA
64 ATTATTGAAGGCATTTTTAGTCAAAAATGCCTTCAATAATCCCCTAAAAATTTTAAAGAAA
* ** * * * * * *
22419400 ATAATTGAAGTTGCTTTTTGTAAAAAATACTTTCAATAATCCATTCCAATTTTTTATCAAGGGAT
1 ATTATTGAAGGCGTTTTTTGTAGAAAATGCCTTCAATAATCCACTCCAATTTTTTATCAGGGGAT
* ** * * *
22419465 TATTAAAGTTATTTTTAGTCACAAATGCATTCAATAATCCCCTAAAAAATTTTAAAGGAA
66 TATTGAAGGCATTTTTAGTCAAAAATGCCTTCAATAATCCCCT-AAAAATTTTAAAGAAA
* * * * * * * *
22419525 ATTATTGAATGCATTTTTTTATAAAAAATACCTTCAATAATTCAGTCCAACTTTTTATCAGGGGA
1 ATTATTGAAGGC-GTTTTTTGTAGAAAATGCCTTCAATAATCCACTCCAATTTTTTATCAGGGGA
* *
22419590 TTATTTAAGGCATTTTTAGTCAAAAATGCCTTCAGTAATCCCCTAAAAATTTTTGAAA-AAA
65 TTATTGAAGGCATTTTTAGTCAAAAATGCCTTCAATAATCCCCTAAAAA-TTTT-AAAGAAA
* * *
22419651 ATTATTGAAGGCGTTTTCTATAGAAAATGCCTTCAATAATCCACTCCAATTTTTTATCACGGGAT
1 ATTATTGAAGGCGTTTTTTGTAGAAAATGCCTTCAATAATCCACTCCAATTTTTTATCAGGGGAT
* * * *
22419716 TATTGAAGGCGTTTTTAGTGACAAATGCCATT-AATAATCCCTTGAAAAATTTTAAAGAAA
66 TATTGAAGGCATTTTTAGTCAAAAATGCC-TTCAATAATCCCCT-AAAAATTTTAAAGAAA
* * * ** *
22419776 ATTATTGAAGGTGTTTTTTTTTTTTGTAGAAAATGCCTTCAATAATCTAGTGTAATTTTTTATCG
1 ATTATTGAAGGCG------TTTTTTGTAGAAAATGCCTTCAATAATCCACTCCAATTTTTTATCA
* * * ** *
22419841 GGGGATTATTGAAAGCATTTTTGGACTAAAAACCCCTTCAATAATCCCTTGAAAAATTTTAAA-A
60 GGGGATTATTGAAGGCATTTTTAGTC-AAAAATGCCTTCAATAATCCCCT-AAAAATTTTAAAGA
22419905 GAA
123 -AA
* * * * * *
22419908 ATTATTGAAGGCATTTTTTTTTTTCAAAAAACGCCTTCAATAATCTC-CTTCAA-TTTTTATTAG
1 ATTATTGAAGGC---GTTTTTTGT-AGAAAATGCCTTCAATAATC-CACTCCAATTTTTTATCAG
* * * *
22419971 GGGATTATTGAAGGCATTTTTAGT-AACAAACGCATTCAATAATTCCCAAAAAATTTCTAAAGAA
61 GGGATTATTGAAGGCATTTTTAGTCAA-AAATGCCTTCAATAATCCCCTAAAAATTT-TAAAGAA
22420035 A
124 A
* * * * *
22420036 ATTATTGAAGGCATTTTTTTTTTGTAGAAAATGCCTTTAATAATCAAGTCCAATTTTTGATCAGG
1 ATTATTGAAGGC----GTTTTTTGTAGAAAATGCCTTCAATAATCCACTCCAATTTTTTATCAGG
*** * ** * * *
22420101 GGATTATTGAAGATGTTTTTAGACTAAAAATATCTTCAATAATCCCTTAAAAATTTTGAAGGAA
62 GGATTATTGAAGGCATTTTTAGTC-AAAAATGCCTTCAATAATCCCCTAAAAATTTTAAAGAAA
** ** * * *
22420165 ATTATTGAAGGTATTTTTTGTAGAAAACACATTCAATAATCCCCTCTAATTTTTTATCAGGGGAT
1 ATTATTGAAGGCGTTTTTTGTAGAAAATGCCTTCAATAATCCACTCCAATTTTTTATCAGGGGAT
* * * * * * * ***
22420230 TACTGAAAGCATTTTTTGT-AGAAAATACCTTCAATAATCTCCTTTAAAAA-TTCATAGGGG
66 TATTGAAGGCATTTTTAGTCA-AAAATGCCTTCAATAATC-CC-CTAAAAATTTTAAAGAAA
* * *
22420290 ATTATTGAAGGTGTTGTTAGT-GAAAAATGCCTTCAATAATCCA
1 ATTATTGAAGGCGTTTTTTGTAG-AAAATGCCTTCAATAATCCA
22420333 ATGATAAAAA
Statistics
Matches: 748, Mismatches: 143, Indels: 76
0.77 0.15 0.08
Matches are distributed among these distances:
116 9 0.01
117 37 0.05
118 35 0.05
120 2 0.00
123 1 0.00
124 21 0.03
125 220 0.29
126 113 0.15
127 13 0.02
128 55 0.07
129 92 0.12
130 43 0.06
131 64 0.09
132 43 0.06
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (124 bp):
ATTATTGAAGGCGTTTTTTGTAGAAAATGCCTTCAATAATCCACTCCAATTTTTTATCAGGGGAT
TATTGAAGGCATTTTTAGTCAAAAATGCCTTCAATAATCCCCTAAAAATTTTAAAGAAA
Found at i:22419945 original size:66 final size:64
Alignment explanation
Indices: 22419868--22420080 Score: 177
Period size: 66 Copynumber: 3.3 Consensus size: 64
22419858 TTTTTGGACT
*
22419868 AAAAACCCCTTCAATAATCCCTTGAAAAATTTTAAAAGAAATTATTGAAGGCATTTTTTTTTTTC
1 AAAAACGCCTTCAATAATCCCTT-AAAAATTTTAAAAGAAATTATTGAAGGCATTTTTTTTTTT-
22419933 A
64 A
* * * * ** **
22419934 AAAAACGCCTTCAATAATCTCCTT-CAATTTTTATTAGGGGATTATTGAAGGCA---TTTTTAGT
1 AAAAACGCCTTCAATAATC-CCTTAAAAATTTTA-AAAGAAATTATTGAAGGCATTTTTTTTTTT
22419995 A
64 A
* * *
22419996 ACAAACGCATTCAATAATTCCC-AAAAAATTTCT-AAAGAAAATTATTGAAGGCATTTTTTTTTT
1 AAAAACGCCTTCAATAA-TCCCTTAAAAATTT-TAAAAG-AAATTATTGAAGGCATTTTTTTTTT
22420059 GTA
63 -TA
* * *
22420062 GAAAATGCCTTTAATAATC
1 AAAAACGCCTTCAATAATC
22420081 AAGTCCAATT
Statistics
Matches: 112, Mismatches: 25, Indels: 21
0.71 0.16 0.13
Matches are distributed among these distances:
61 2 0.02
62 36 0.32
63 9 0.08
65 14 0.12
66 47 0.42
67 4 0.04
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (64 bp):
AAAAACGCCTTCAATAATCCCTTAAAAATTTTAAAAGAAATTATTGAAGGCATTTTTTTTTTTA
Found at i:22423411 original size:62 final size:61
Alignment explanation
Indices: 22423336--22423514 Score: 154
Period size: 63 Copynumber: 2.9 Consensus size: 61
22423326 ATTTCTGGCA
*
22423336 AAAAACGTATTTAATAATCACCTCCATTTTTTAT-AAGGGGATTATTCAAGGCATTGTCTACC
1 AAAAACG-CTTTAATAATCACCTCCATTTTTTATGAA-GGGATTATTCAAGGCATTGTCTACC
* * * * * *
22423398 AAAAATGCCTTTAATAATTC-CCTATCCA-TTTTTATGAAGTGATTATTCAAGGTATTTTCTGCT
1 AAAAACG-CTTTAATAA-TCACC--TCCATTTTTTATGAAGGGATTATTCAAGGCATTGTCTACC
* *
22423461 AAAAACGCTTTCAATAATCA-CTCCAATTTTTTA-G-AGAGGATTATTTAAAGCATT
1 AAAAACGCTTT-AATAATCACCTCC-ATTTTTTATGAAG-GGATTATTCAAGGCATT
22423515 TTAGTTGAAA
Statistics
Matches: 95, Mismatches: 13, Indels: 19
0.75 0.10 0.15
Matches are distributed among these distances:
60 5 0.05
61 15 0.16
62 29 0.31
63 40 0.42
64 6 0.06
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (61 bp):
AAAAACGCTTTAATAATCACCTCCATTTTTTATGAAGGGATTATTCAAGGCATTGTCTACC
Found at i:22431190 original size:9 final size:9
Alignment explanation
Indices: 22431161--22431193 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
22431151 AAAAAATTAA
22431161 AAAAAATCT
1 AAAAAATCT
22431170 AAAAAAT-T
1 AAAAAATCT
*
22431178 AAAAAATCC
1 AAAAAATCT
22431187 AAAAAAT
1 AAAAAAT
22431194 AGAAAGAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.73, C:0.09, G:0.00, T:0.18
Consensus pattern (9 bp):
AAAAAATCT
Found at i:22431203 original size:19 final size:17
Alignment explanation
Indices: 22431160--22431194 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
22431150 TAAAAAATTA
*
22431160 AAAAAAATCTAAAAAAT
1 AAAAAAATCCAAAAAAT
*
22431177 TAAAAAATCCAAAAAAT
1 AAAAAAATCCAAAAAAT
22431194 A
1 A
22431195 GAAAGAAATT
Statistics
Matches: 15, Mismatches: 3, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.74, C:0.09, G:0.00, T:0.17
Consensus pattern (17 bp):
AAAAAAATCCAAAAAAT
Found at i:22434636 original size:8 final size:8
Alignment explanation
Indices: 22434623--22434715 Score: 80
Period size: 8 Copynumber: 10.9 Consensus size: 8
22434613 ATTCAAGCTT
22434623 TTTTTTAA
1 TTTTTTAA
22434631 TTTTTTAA
1 TTTTTTAA
**
22434639 TTTTTGGGA
1 TTTTT-TAA
*
22434648 TTTTTCAA
1 TTTTTTAA
22434656 -TTTTTAGA
1 TTTTTTA-A
22434664 TTTTTTAAA
1 TTTTTT-AA
22434673 GTTTTTTAA
1 -TTTTTTAA
22434682 TTTTTTAA
1 TTTTTTAA
*
22434690 TTTTTCAAA
1 TTTTT-TAA
22434699 TTTTTTTTAA
1 --TTTTTTAA
22434709 TTTTTTA
1 TTTTTTA
22434716 GCTTAATACT
Statistics
Matches: 70, Mismatches: 7, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
7 5 0.07
8 35 0.50
9 16 0.23
10 9 0.13
11 5 0.07
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.69
Consensus pattern (8 bp):
TTTTTTAA
Found at i:22434636 original size:9 final size:9
Alignment explanation
Indices: 22434622--22434714 Score: 61
Period size: 9 Copynumber: 10.7 Consensus size: 9
22434612 AATTCAAGCT
22434622 TTTTTTTAA
1 TTTTTTTAA
22434631 -TTTTTTAA
1 TTTTTTTAA
***
22434639 TTTTTGGGA
1 TTTTTTTAA
*
22434648 -TTTTTCAA
1 TTTTTTTAA
22434656 --TTTTTAGA
1 TTTTTTTA-A
*
22434664 TTTTTTAAA
1 TTTTTTTAA
*
22434673 GTTTTTTAA
1 TTTTTTTAA
22434682 -TTTTTTAA
1 TTTTTTTAA
**
22434690 TTTTTCAAA
1 TTTTTTTAA
22434699 TTTTTTTTAA
1 -TTTTTTTAA
22434709 TTTTTT
1 TTTTTT
22434715 AGCTTAATAC
Statistics
Matches: 64, Mismatches: 14, Indels: 12
0.71 0.16 0.13
Matches are distributed among these distances:
7 5 0.08
8 22 0.34
9 25 0.39
10 12 0.19
ACGTcount: A:0.23, C:0.02, G:0.05, T:0.70
Consensus pattern (9 bp):
TTTTTTTAA
Found at i:22434678 original size:27 final size:25
Alignment explanation
Indices: 22434623--22434713 Score: 85
Period size: 26 Copynumber: 3.5 Consensus size: 25
22434613 ATTCAAGCTT
***
22434623 TTTTTTAATTTTTTAATTTTTGGGA-
1 TTTTTTAA-TTTTTAATTTTTCAAAG
* *
22434648 TTTTTCAATTTTTAGATTTTTTAAAG
1 TTTTTTAATTTTTA-ATTTTTCAAAG
*
22434674 TTTTTTAATTTTTTAATTTTTCAAATT
1 TTTTTTAA-TTTTTAATTTTTCAAA-G
22434701 TTTTTTAATTTTT
1 TTTTTTAATTTTT
22434714 TAGCTTAATA
Statistics
Matches: 55, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
24 6 0.11
25 14 0.25
26 21 0.38
27 14 0.25
ACGTcount: A:0.23, C:0.02, G:0.05, T:0.69
Consensus pattern (25 bp):
TTTTTTAATTTTTAATTTTTCAAAG
Found at i:22435003 original size:18 final size:18
Alignment explanation
Indices: 22434969--22435004 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
22434959 TTTTTGATTT
* *
22434969 AATATAAATATATTTATA
1 AATATAAATAAACTTATA
22434987 AATATAAATAAACTTATA
1 AATATAAATAAACTTATA
22435005 CATAATAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
AATATAAATAAACTTATA
Found at i:22439054 original size:17 final size:17
Alignment explanation
Indices: 22439032--22439064 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
22439022 TTAAAAAATT
22439032 TAAGAAA-ACAGAAATAA
1 TAAGAAAGA-AGAAATAA
22439049 TAAGAAAGAAGAAATA
1 TAAGAAAGAAGAAATA
22439065 TGACTATGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 14 0.93
18 1 0.07
ACGTcount: A:0.70, C:0.03, G:0.15, T:0.12
Consensus pattern (17 bp):
TAAGAAAGAAGAAATAA
Found at i:22440424 original size:12 final size:12
Alignment explanation
Indices: 22440407--22440437 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
22440397 TTTTCAAAAT
22440407 TTTTATTAATTG
1 TTTTATTAATTG
*
22440419 TTTTATTAATTT
1 TTTTATTAATTG
22440431 TTTTATT
1 TTTTATT
22440438 TTTAATTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (12 bp):
TTTTATTAATTG
Found at i:22440570 original size:12 final size:12
Alignment explanation
Indices: 22440555--22440585 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
22440545 CAAAATTAAA
22440555 AATAAAAAAATT
1 AATAAAAAAATT
*
22440567 AATAAAACAATT
1 AATAAAAAAATT
22440579 AATAAAA
1 AATAAAA
22440586 TTTTTGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (12 bp):
AATAAAAAAATT
Found at i:22452388 original size:50 final size:48
Alignment explanation
Indices: 22452320--22452654 Score: 165
Period size: 50 Copynumber: 6.8 Consensus size: 48
22452310 ACATATGAGA
* * *
22452320 TTTTAAAGTTGTTAAGCCTCTGTTGAGAGGAGC-TTTTCTAAGATAAGAATT
1 TTTTAAA-TTGTTGAGCCTCTGCTAAGAGGAGCTTTTTC-AAGATAAG--TT
22452371 TTTTAAATTGTTGAGCCTCTGCTAAGAGGAGCTTTTTCAAGATAAGTT
1 TTTTAAATTGTTGAGCCTCTGCTAAGAGGAGCTTTTTCAAGATAAGTT
* * ** * *
22452419 TTTTAAGTTGTAGAGCCTCTGCTAAGAATAGCCCTTTTCAAGAT--GAT
1 TTTTAAATTGTTGAGCCTCTGCTAAGAGGAG-CTTTTTCAAGATAAGTT
* * * * * * **
22452466 TTTTAAAGTTATTGAGCCTTTACTGAA-ATGAGCTTTTCCAAAATGAAAAT
1 TTTTAAA-TTGTTGAGCCTCTGCT-AAGAGGAGCTTTTTCAAGAT-AAGTT
* * * * * * * * **
22452516 TTTAAAAGCTGTTGAGCCACTACTCAGAAGAGCTTTTCCAAAATGAAAAT
1 TTTTAAA-TTGTTGAGCCTCTGCTAAGAGGAGCTTTTTCAAGAT-AAGTT
* * * * * * **
22452566 TCTTAAAGTTATTAAGCCTCTGCTGAGATGAGCTTTTTTCAAAATAAAAAT
1 TTTTAAA-TTGTTGAGCCTCTGCTAAGAGGAGC-TTTTTCAAGAT-AAGTT
* * * *
22452617 TTTAAAAGTTGTTGAGCCTCTACTAAGAAGAGCCTTTT
1 TTTTAAA-TTGTTGAGCCTCTGCTAAGAGGAGCTTTTT
22452655 AAATTTTCAA
Statistics
Matches: 229, Mismatches: 46, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
47 17 0.07
48 44 0.19
49 14 0.06
50 101 0.44
51 53 0.23
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (48 bp):
TTTTAAATTGTTGAGCCTCTGCTAAGAGGAGCTTTTTCAAGATAAGTT
Found at i:22452616 original size:51 final size:50
Alignment explanation
Indices: 22452464--22452654 Score: 213
Period size: 50 Copynumber: 3.8 Consensus size: 50
22452454 TTTCAAGATG
* * *
22452464 ATTTTTAAAGTTATTGAGCCTTTACTGAAATGAGCTTTTCCAAAATGAAA
1 ATTTTAAAAGTTATTGAGCCTCTACTGAGATGAGCTTTTCCAAAATGAAA
* * * * *
22452514 ATTTTAAAAGCTGTTGAGCCACTACTCAGAAGAGCTTTTCCAAAATGAAA
1 ATTTTAAAAGTTATTGAGCCTCTACTGAGATGAGCTTTTCCAAAATGAAA
* * * *
22452564 ATTCTT-AAAGTTATTAAGCCTCTGCTGAGATGAGCTTTTTTCAAAATAAAA
1 ATT-TTAAAAGTTATTGAGCCTCTACTGAGATGAGC-TTTTCCAAAATGAAA
* * *
22452615 ATTTTAAAAGTTGTTGAGCCTCTACTAAGAAGAGCCTTTT
1 ATTTTAAAAGTTATTGAGCCTCTACTGAGATGAG-CTTTT
22452655 AAATTTTCAA
Statistics
Matches: 115, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
50 69 0.60
51 45 0.39
52 1 0.01
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (50 bp):
ATTTTAAAAGTTATTGAGCCTCTACTGAGATGAGCTTTTCCAAAATGAAA
Found at i:22452915 original size:12 final size:11
Alignment explanation
Indices: 22452882--22452920 Score: 55
Period size: 12 Copynumber: 3.6 Consensus size: 11
22452872 TTATTTTTGT
22452882 TTTCTTT-TT-
1 TTTCTTTCTTA
22452891 TTTCTTTCTTA
1 TTTCTTTCTTA
22452902 TTTCTTTCCTTA
1 TTTCTTT-CTTA
22452914 TTTCTTT
1 TTTCTTT
22452921 TTCCTTTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 7 0.26
10 2 0.07
11 7 0.26
12 11 0.41
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTCTTTCTTA
Found at i:22456182 original size:2 final size:2
Alignment explanation
Indices: 22456175--22456207 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
22456165 AACAATTAAC
*
22456175 GA GA GA GA GA GA GA AA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
22456208 TGCCTACCTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
GA
Found at i:22462981 original size:10 final size:10
Alignment explanation
Indices: 22462961--22462994 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
22462951 GTTTTGTAAA
22462961 TATATTTTATT
1 TATA-TTTATT
*
22462972 TTTATTTATT
1 TATATTTATT
22462982 TATATTTATT
1 TATATTTATT
22462992 TAT
1 TAT
22462995 TAAGTTTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 18 0.86
11 3 0.14
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (10 bp):
TATATTTATT
Found at i:22462989 original size:14 final size:14
Alignment explanation
Indices: 22462966--22462995 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
22462956 GTAAATATAT
*
22462966 TTTATTTTTATTTA
1 TTTATATTTATTTA
22462980 TTTATATTTATTTA
1 TTTATATTTATTTA
22462994 TT
1 TT
22462996 AAGTTTAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTATATTTATTTA
Found at i:22463109 original size:11 final size:11
Alignment explanation
Indices: 22463093--22463120 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
22463083 ATTTGTAAAT
22463093 AAATTTTTTTA
1 AAATTTTTTTA
22463104 AAATTTTTTTA
1 AAATTTTTTTA
22463115 AAATTT
1 AAATTT
22463121 GTTTGTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (11 bp):
AAATTTTTTTA
Found at i:22463224 original size:18 final size:18
Alignment explanation
Indices: 22463179--22463224 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
22463169 ATAATATTAA
*
22463179 TAAAATTATATTTTTATTT
1 TAAAATT-TAATTTTATTT
* *
22463198 TATACTTTAATTTTATTT
1 TAAAATTTAATTTTATTT
22463216 TAAAATTTA
1 TAAAATTTA
22463225 TTTATATTCA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
18 17 0.77
19 5 0.23
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (18 bp):
TAAAATTTAATTTTATTT
Found at i:22463232 original size:18 final size:17
Alignment explanation
Indices: 22463179--22463232 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 17
22463169 ATAATATTAA
22463179 TAAAATTATATTTTTATTT
1 TAAAATT-TA-TTTTATTT
* *
22463198 TATACTTTAATTTTATTT
1 TAAAATTT-ATTTTATTT
22463216 TAAAATTTATTTATATT
1 TAAAATTTATTT-TATT
22463233 CATTTGAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
17 4 0.14
18 19 0.66
19 6 0.21
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (17 bp):
TAAAATTTATTTTATTT
Found at i:22464604 original size:14 final size:14
Alignment explanation
Indices: 22464585--22464614 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
22464575 GTTTGGTGGA
*
22464585 TTTAATTGAATCGT
1 TTTAATTGAAACGT
22464599 TTTAATTGAAACGT
1 TTTAATTGAAACGT
22464613 TT
1 TT
22464615 GGGTTAGTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.07, G:0.13, T:0.50
Consensus pattern (14 bp):
TTTAATTGAAACGT
Found at i:22465674 original size:39 final size:39
Alignment explanation
Indices: 22465631--22465709 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
22465621 GCCATGTGTT
22465631 CCTAAACTGTCCAAGCCGAATCTAGGCTTGAGTGAGCTG
1 CCTAAACTGTCCAAGCCGAATCTAGGCTTGAGTGAGCTG
22465670 CCTAAACTGTCCAAGCCGAATCTAGGCTTGAGTGAGCTG
1 CCTAAACTGTCCAAGCCGAATCTAGGCTTGAGTGAGCTG
22465709 C
1 C
22465710 ATGGAAATGC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (39 bp):
CCTAAACTGTCCAAGCCGAATCTAGGCTTGAGTGAGCTG
Found at i:22469929 original size:22 final size:22
Alignment explanation
Indices: 22469890--22469951 Score: 106
Period size: 22 Copynumber: 2.8 Consensus size: 22
22469880 GAGTCAAAAG
*
22469890 TATGATTCCATTGATTGATTTTC
1 TATGATCCCA-TGATTGATTTTC
22469913 TATGATCCCATGATTGATTTTC
1 TATGATCCCATGATTGATTTTC
22469935 TATGATCCCATGATTGA
1 TATGATCCCATGATTGA
22469952 CTTTGATTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
22 29 0.76
23 9 0.24
ACGTcount: A:0.24, C:0.16, G:0.15, T:0.45
Consensus pattern (22 bp):
TATGATCCCATGATTGATTTTC
Found at i:22470461 original size:4 final size:5
Alignment explanation
Indices: 22470437--22470472 Score: 58
Period size: 5 Copynumber: 7.6 Consensus size: 5
22470427 AATGCAAAAG
22470437 AAATA AAATA AAATA AAAT- AAATA AAA-A AAATA AAA
1 AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAA
22470473 ATGTGCAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 8 0.28
5 21 0.72
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAATA
Found at i:22470473 original size:10 final size:9
Alignment explanation
Indices: 22470420--22470473 Score: 63
Period size: 9 Copynumber: 5.7 Consensus size: 9
22470410 AATGGTAGAG
22470420 TAAAAAAAA
1 TAAAAAAAA
*
22470429 TGCAAAAGAAA
1 T--AAAAAAAA
22470440 TAAAATAAAA
1 TAAAA-AAAA
*
22470450 TAAAATAAA
1 TAAAAAAAA
22470459 TAAAAAAAA
1 TAAAAAAAA
22470468 TAAAAA
1 TAAAAA
22470474 TGTGCAAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
9 22 0.58
10 8 0.21
11 8 0.21
ACGTcount: A:0.80, C:0.02, G:0.04, T:0.15
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:22473139 original size:16 final size:16
Alignment explanation
Indices: 22473107--22473151 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
22473097 ATATTTTCAA
*
22473107 GCAATTTTAAATT-CAT
1 GCAA-TTTAATTTCCAT
22473123 GCAATTTAATTTCCAT
1 GCAATTTAATTTCCAT
*
22473139 GTAATTTAATTTC
1 GCAATTTAATTTC
22473152 AAGTCTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
15 7 0.27
16 19 0.73
ACGTcount: A:0.33, C:0.13, G:0.07, T:0.47
Consensus pattern (16 bp):
GCAATTTAATTTCCAT
Found at i:22475492 original size:17 final size:17
Alignment explanation
Indices: 22475466--22475524 Score: 66
Period size: 17 Copynumber: 3.5 Consensus size: 17
22475456 TAATTCAAGG
*
22475466 TTTAGAAACTTTTCATT
1 TTTAGTAACTTTTCATT
*
22475483 TTTAGTAACTTTTTATT
1 TTTAGTAACTTTTCATT
* *
22475500 TTAAATAA-TTTTCTATT
1 TTTAGTAACTTTTC-ATT
22475517 TTTAGTAA
1 TTTAGTAA
22475525 GTTTCAGCAT
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
16 4 0.12
17 30 0.88
ACGTcount: A:0.31, C:0.07, G:0.05, T:0.58
Consensus pattern (17 bp):
TTTAGTAACTTTTCATT
Found at i:22476689 original size:21 final size:21
Alignment explanation
Indices: 22476664--22476704 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
22476654 TTCTTGATGC
**
22476664 ATTCTAGCATGCTTTTCTTCA
1 ATTCTAGCACACTTTTCTTCA
22476685 ATTCTAGCACACTTTTCTTC
1 ATTCTAGCACACTTTTCTTC
22476705 TCTTTCTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.27, G:0.07, T:0.46
Consensus pattern (21 bp):
ATTCTAGCACACTTTTCTTCA
Found at i:22477622 original size:130 final size:130
Alignment explanation
Indices: 22477370--22477645 Score: 403
Period size: 130 Copynumber: 2.1 Consensus size: 130
22477360 TTCACACATA
* * * *
22477370 TAAACCATGAAAACCATGTTCAATCATTCAGACAAGTTTAATGTCATATATTTAAGCTATCTAAT
1 TAAA-CATAAAAACCATGTTCAATCATTCAAACAAGTTTAATATCATATATTTAAGCTATCTAAC
* ** * *
22477435 TGTTAAAACATAACAGCAACTACATAATTATAATTTTGCCCCCTTAATGGTATAAAAAGTCTAAA
65 TGTTAAAACAGAACAAAAACTACATAATTATAATTTTGACCCCTTAATGGTACAAAAAGTCTAAA
22477500 G
130 G
* * *
22477501 TAGACATAAAAATCATGTTCAATCATTCAAACAAGTTTAATATCATGTATTTAAGCTATCTAAAC
1 TAAACATAAAAACCATGTTCAATCATTCAAACAAGTTTAATATCATATATTTAAGCTATCT-AAC
*
22477566 TGTTAAAATAGAACAAAAACTACATAATTATAATTTT-ACCCCTTAATGGTACAAAAAGTCTAAA
65 TGTTAAAACAGAACAAAAACTACATAATTATAATTTTGACCCCTTAATGGTACAAAAAGTCTAAA
22477630 G
130 G
22477631 TAAACAT-AAAACCAT
1 TAAACATAAAAACCAT
22477646 AACTTGTTCG
Statistics
Matches: 129, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
129 7 0.05
130 84 0.65
131 38 0.29
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.31
Consensus pattern (130 bp):
TAAACATAAAAACCATGTTCAATCATTCAAACAAGTTTAATATCATATATTTAAGCTATCTAACT
GTTAAAACAGAACAAAAACTACATAATTATAATTTTGACCCCTTAATGGTACAAAAAGTCTAAAG
Found at i:22477961 original size:161 final size:159
Alignment explanation
Indices: 22477517--22478765 Score: 1112
Period size: 161 Copynumber: 7.8 Consensus size: 159
22477507 TAAAAATCAT
*
22477517 GTTCAATCATTCAAACAAGTTTAATATCATGTATTTAAGCTATCTAAACTGTTAAAATAGAACAA
1 GTTCAATCATTCAAACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAATAGAACAA
* ** * ** ** * * *
22477582 AAACTACATAATTATAATTTTACCCCTTAATGGTACAAAAAGTC-TAAAGTAAACATAAAACCA-
66 TAACTACA-AATTGCATTTTTACCTTTTAACAGCATAAAAAGTCATAAA-CAAACAT-AAA-CAG
* * *
22477645 TAACTTGTTCGCACATATCAATCATGAAAACTAA
127 TAACTTTTTCACACATATCAAT-ATGAAAACCAA
* * * * * * *
22477679 GTTTAATCATTCAGACAAGTTTAATATAATTTATT-AAGCTACCT-AACTATTAAAATTA-AATA
1 GTTCAATCATTCAAACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAA-TAGAACA
* ** * * * * * *
22477741 ATAATTGGAAATTTGCATTTTTACTTTTTAACGGCACAAAAAGTCCTAAATAAACATAAATAGTA
65 ATAACTACAAA-TTGCATTTTTACCTTTTAACAGCATAAAAAGTCATAAACAAACATAAACAGTA
* *
22477806 GCTTTTTCACACATATCAACTGTGAAAACCAA
129 ACTTTTTCACACATATCAA-TATGAAAACCAA
* * *
22477838 GTTTAATCATTCAAACAAGTTTAATATAATGTATTGAAGCTATCTAAACTGTTAAAATAGAATAA
1 GTTCAATCATTCAAACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAATAGAACAA
* ** * * * *
22477903 TAATTGTAAACTTGCATTTTTTCCTTTTAACAGTATAAAAAGTCATAAACAGACATAAACGGTAA
66 TAACTACAAA-TTGCATTTTTACCTTTTAACAGCATAAAAAGTCATAAACAAACATAAACAGTAA
*
22477968 CTTTTTCACACATATCAATCACGAAAACCAA
130 CTTTTTCACACATATCAAT-ATGAAAACCAA
* *
22477999 GTTCAATCATTCAAACAAGTTTAATATTATATATTGATA-CTATCTAAACTGTTAAAATAGAACA
1 GTTCAATCATTCAAACAAGTTTAATATCATGTATTGA-AGCTATCTAAACTGTTAAAATAGAACA
* * ** *
22478063 ATAACTGCAAACTTGCATTTTTACCTTTCAACAGCATAAAAAGTGC-TAAACAAACA-AAATTGC
65 ATAACTACAAA-TTGCATTTTTACCTTTTAACAGCATAAAAAGT-CATAAACAAACATAAACAGT
* * * * *
22478126 AACTTTTTTCACACGTATAAACCATAAAAACCAT
128 AAC-TTTTTCACACATATCAA-TATGAAAACCAA
*** * *
22478160 GTTCAATCATTTGGACAAGTTTAATATCATGTATTTAAGCTATCTAAACTGTTAAAATAGAATAA
1 GTTCAATCATTCAAACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAATAGAACAA
* * * * *
22478225 TAACTACATAATTACAATTTTACCTTTTAACAACATAAAAAGTCCA-AAACAGACATAAACCA-C
66 TAACTACA-AATTGCATTTTTACCTTTTAACAGCATAAAAAGT-CATAAACAAACATAAA-CAGT
* *
22478288 AACTTTTTCACACATATCAATTGTGGAAACCAA
128 AACTTTTTCACACATATCAA-TATGAAAACCAA
* * * ** * * *
22478321 GTTTAATCATTCAAACAAGTTTAATATAATGCATAAAAGCTATCTAAACTATTAAAACAAAACAA
1 GTTCAATCATTCAAACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAATAGAACAA
* * ** * ** *
22478386 TAACTACAAACTTGCATTTTTGCCTTTCAATGGCATAAAAAGTCCTAAACAAATGTAAACCGTAA
66 TAACTACAAA-TTGCATTTTTACCTTTTAACAGCATAAAAAGTCATAAACAAACATAAACAGTAA
* *
22478451 CCTTTTTCACACATGT--ATAATGAAAACCAC
130 -CTTTTTCACACATATCAAT-ATGAAAACCAA
* * * *
22478481 GTTCAATCATTCAGACAAGTTTAATATCATGTATTTAAGCTATCT-AACTTTCTAAAATAAAACA
1 GTTCAATCATTCAAACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGT-TAAAATAGAACA
* * * *
22478545 ATAACTACAAATTAGTATTTTTACCTTTTAACAGCA-CAAAAGTCATAAATAGACATAAAACA-T
65 ATAACTACAAATT-GCATTTTTACCTTTTAACAGCATAAAAAGTCATAAACAAACAT-AAACAGT
* *
22478608 AACTTTTTCACACATATCAACCGTA-AAAAACTAA
128 AACTTTTTCACACATATCAA---TATGAAAACCAA
*** * * * *
22478642 GTTCAATCATTCGGGCAAGTTTAATATCATATATTGAA-CTATCTAAGCTGTTAAAATAGAATAG
1 GTTCAATCATTCAAACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAATAGAACAA
* * ** * *
22478706 TAACTATATATTTATATTTTTGCCTTTTAA-AGACACAAAAAGTTCATAAACAAACATAAA
66 TAACTACA-AATTGCATTTTTACCTTTTAACAG-CATAAAAAG-TCATAAACAAACATAAA
22478766 GTATAAGTTT
Statistics
Matches: 895, Mismatches: 156, Indels: 73
0.80 0.14 0.06
Matches are distributed among these distances:
158 15 0.02
159 92 0.10
160 206 0.23
161 512 0.57
162 69 0.08
163 1 0.00
ACGTcount: A:0.43, C:0.16, G:0.08, T:0.32
Consensus pattern (159 bp):
GTTCAATCATTCAAACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAATAGAACAA
TAACTACAAATTGCATTTTTACCTTTTAACAGCATAAAAAGTCATAAACAAACATAAACAGTAAC
TTTTTCACACATATCAATATGAAAACCAA
Found at i:22478185 original size:322 final size:322
Alignment explanation
Indices: 22477505--22478702 Score: 1289
Period size: 322 Copynumber: 3.7 Consensus size: 322
22477495 CTAAAGTAGA
*
22477505 CATAAAAATCATGTTCAATCATTCAAACAAGTTTAATATCATGTATTTAAGCTATCTAAACTGTT
1 CATAAAAACCATGTTCAATCATTCAAACAAGTTTAATATCATGTATTTAAGCTATCTAAACTGTT
* * ** ** * * * *
22477570 AAAATAGAACAAAAACTACATAATTATAATTTTACCCCTTAATGGTACAAAAAGTC-TAAAGTAA
66 AAAATAGAACAATAACTACATAATTACAATTTTACCTTTTAACAGCATAAAAAGTCATAAA-CAG
* * * * * *
22477634 ACATAAAACCATAACTTGTTCGCACATATCAATCATGAAAACTAAGTTTAATCATTCAGACAAGT
130 ACATAAAACCATAACTTTTTCACACATATCAATCACGAAAACCAAGTTCAATCATTCAAACAAGT
* * * * * *
22477699 TTAATATAATTTATT-AAGCTACCT-AACTATTAAAATTA-AATAATAATTGGAAATTTGCATTT
195 TTAATATAATATATTGAAGCTATCTAAACTATTAAAA-TAGAACAATAACTGCAAACTTGCATTT
* * * * * *
22477761 TTACTTTTTAACGGCACAAAAAGTCCTAAATAAACATAAATAGTAGCTTTTTCACACATATCAAC
259 TTACCTTTCAACGGCATAAAAAGTCCTAAACAAACA-AAATAGTAACTTTTTCACACATATAAAC
** * * * * *
22477826 TGTGAAAACCAAGTTTAATCATTCAAACAAGTTTAATATAATGTATTGAAGCTATCTAAACTGTT
1 CATAAAAACCATGTTCAATCATTCAAACAAGTTTAATATCATGTATTTAAGCTATCTAAACTGTT
* * ** * * * *
22477891 AAAATAGAATAATAATTGTA-AACTTGCATTTTTTCCTTTTAACAGTATAAAAAGTCATAAACAG
66 AAAATAGAACAATAACTACATAA-TTACAATTTTACCTTTTAACAGCATAAAAAGTCATAAACAG
**
22477955 ACAT-AAACGGTAACTTTTTCACACATATCAATCACGAAAACCAAGTTCAATCATTCAAACAAGT
130 ACATAAAACCATAACTTTTTCACACATATCAATCACGAAAACCAAGTTCAATCATTCAAACAAGT
* *
22478019 TTAATATTATATATTGATA-CTATCTAAACTGTTAAAATAGAACAATAACTGCAAACTTGCATTT
195 TTAATATAATATATTGA-AGCTATCTAAACTATTAAAATAGAACAATAACTGCAAACTTGCATTT
* * * * *
22478083 TTACCTTTCAACAGCATAAAAAGTGCTAAACAAACAAAATTGCAACTTTTTTCACACGTATAAAC
259 TTACCTTTCAACGGCATAAAAAGTCCTAAACAAACAAAATAGTAAC-TTTTTCACACATATAAAC
***
22478148 CATAAAAACCATGTTCAATCATTTGGACAAGTTTAATATCATGTATTTAAGCTATCTAAACTGTT
1 CATAAAAACCATGTTCAATCATTCAAACAAGTTTAATATCATGTATTTAAGCTATCTAAACTGTT
* *
22478213 AAAATAGAATAATAACTACATAATTACAATTTTACCTTTTAACAACATAAAAAGTCCA-AAACAG
66 AAAATAGAACAATAACTACATAATTACAATTTTACCTTTTAACAGCATAAAAAGT-CATAAACAG
* *** * *
22478277 ACAT-AAACCACAACTTTTTCACACATATCAATTGTGGAAACCAAGTTTAATCATTCAAACAAGT
130 ACATAAAACCATAACTTTTTCACACATATCAATCACGAAAACCAAGTTCAATCATTCAAACAAGT
** ** * * *
22478341 TTAATATAATGCATAAAAGCTATCTAAACTATTAAAACAAAACAATAACTACAAACTTGCATTTT
195 TTAATATAATATATTGAAGCTATCTAAACTATTAAAATAGAACAATAACTGCAAACTTGCATTTT
* * ** ** * *
22478406 TGCCTTTCAATGGCATAAAAAGTCCTAAACAAATGTAAACCGTAACCTTTTTCACACATGTATA-
260 TACCTTTCAACGGCATAAAAAGTCCTAAACAAA-CAAAATAGTAA-CTTTTTCACACATATAAAC
* * * *
22478470 -ATGAAAACCACGTTCAATCATTCAGACAAGTTTAATATCATGTATTTAAGCTATCT-AACTTTC
1 CATAAAAACCATGTTCAATCATTCAAACAAGTTTAATATCATGTATTTAAGCTATCTAAACTGT-
* * * * *
22478533 TAAAATAAAACAATAACTACA-AATTAGTATTTTTACCTTTTAACAGCA-CAAAAGTCATAAATA
65 TAAAATAGAACAATAACTACATAATTA-CAATTTTACCTTTTAACAGCATAAAAAGTCATAAACA
* ***
22478596 GACATAAAA-CATAACTTTTTCACACATATCAA-C-CGTAAAAAACTAAGTTCAATCATTCGGGC
129 GACATAAAACCATAACTTTTTCACACATATCAATCACG---AAAACCAAGTTCAATCATTCAAAC
* * *
22478658 AAGTTTAATATCATATATTGAA-CTATCTAAGCTGTTAAAATAGAA
191 AAGTTTAATATAATATATTGAAGCTATCTAAACTATTAAAATAGAA
22478703 TAGTAACTAT
Statistics
Matches: 730, Mismatches: 128, Indels: 39
0.81 0.14 0.04
Matches are distributed among these distances:
318 1 0.00
319 2 0.00
320 133 0.18
321 244 0.33
322 325 0.45
323 24 0.03
324 1 0.00
ACGTcount: A:0.43, C:0.17, G:0.08, T:0.32
Consensus pattern (322 bp):
CATAAAAACCATGTTCAATCATTCAAACAAGTTTAATATCATGTATTTAAGCTATCTAAACTGTT
AAAATAGAACAATAACTACATAATTACAATTTTACCTTTTAACAGCATAAAAAGTCATAAACAGA
CATAAAACCATAACTTTTTCACACATATCAATCACGAAAACCAAGTTCAATCATTCAAACAAGTT
TAATATAATATATTGAAGCTATCTAAACTATTAAAATAGAACAATAACTGCAAACTTGCATTTTT
ACCTTTCAACGGCATAAAAAGTCCTAAACAAACAAAATAGTAACTTTTTCACACATATAAAC
Found at i:22478758 original size:643 final size:641
Alignment explanation
Indices: 22477505--22478761 Score: 1555
Period size: 643 Copynumber: 2.0 Consensus size: 641
22477495 CTAAAGTAGA
*
22477505 CATAAAAATCATGTTCAATCATTCAAACAAGTTTAATATCATGTATTTAAGCTATCTAAACTGTT
1 CATAAAAACCATGTTCAATCATTCAAACAAGTTTAATATCATGTATTTAAGCTATCTAAACTGTT
* **** * **
22477570 AAAATAGAACAAAAACTACATAATTATAATTTTACCCCTTAATGGTACAAAAAGTCTAAAGTAAA
66 AAAATAGAACAAAAACTACATAATTACAATTTTACCCCTTAACAACACAAAAAGTCCAAAACAAA
* * * *
22477635 CATAAAACCATAACTTGTTCGCACATATCAATCATGAAAACTAAGTTTAATCATTCAGACAAGTT
131 CATAAAACCACAACTTGTTCACACATATCAATCATGAAAACCAAGTTTAATCATTCAAACAAGTT
** * ** * * ** *
22477700 TAATATAATTTATTAAGCTACCTAACTATTAAAATTAAATAATAATTGGAAATTTGCATTTTTAC
196 TAATATAATGCATAAAGCTACCTAACTATTAAAACAAAACAATAACTACAAACTTGCATTTTTAC
* * * * *
22477765 TTTTTAACGGCACAAAAAGTCCTAAATAAACATAAATAGTAGCTTTTTCACACATATCAACTGTG
261 CTTTCAACGGCACAAAAAGTCCTAAACAAACATAAACAGTACCTTTTTCACACATATCAAC--TG
*
22477830 AAAACCAAGTTTAATCATTCAAACAAGTTTAATATAATGTATTGAAGCTATCTAAACTGTTAAAA
324 AAAACCAAGTTCAATCATTCAAACAAGTTTAATATAATGTATTGAAGCTATCTAAACTGTTAAAA
* * * ** * *
22477895 TAGAATAATAATTGTAAACTTGCATTTTTTCCTTTTAACAGTATAAAAAGTCATAAACAGACATA
389 TAAAACAATAACTACAAACTTGCATTTTTACCTTTTAACAGCATAAAAAGTCATAAACAGACATA
*
22477960 AACGGTAACTTTTTCACACATATCAATCACGAAAACCAAGTTCAATCATTCAAACAAGTTTAATA
454 AACGATAACTTTTTCACACATATCAATCACGAAAACCAAGTTCAATCATTCAAACAAGTTTAATA
* * *
22478025 TTATATATTGATACTATCTAAACTGTTAAAATAGAACAATAACTGCAAACTTGCATTTTTACCTT
519 TCATATATTGATACTATCTAAACTGTTAAAATAGAACAATAACTACAAACTTACATTTTTACCTT
*
22478090 TCAACAGCATAAAAAGTGCTAAACAAACAAAATTGCAACTTTTTTCACACGTATAAAC
584 TCAACAGCACAAAAAGTGCTAAACAAACAAAATTGCAACTTTTTTCACACGTATAAAC
***
22478148 CATAAAAACCATGTTCAATCATTTGGACAAGTTTAATATCATGTATTTAAGCTATCTAAACTGTT
1 CATAAAAACCATGTTCAATCATTCAAACAAGTTTAATATCATGTATTTAAGCTATCTAAACTGTT
* * ** * *
22478213 AAAATAGAATAATAACTACATAATTACAATTTTACCTTTTAACAACATAAAAAGTCCAAAACAGA
66 AAAATAGAACAAAAACTACATAATTACAATTTTACCCCTTAACAACACAAAAAGTCCAAAACAAA
* ** *
22478278 CAT-AAACCACAACTTTTTCACACATATCAATTGTGGAAACCAAGTTTAATCATTCAAACAAGTT
131 CATAAAACCACAACTTGTTCACACATATCAATCATGAAAACCAAGTTTAATCATTCAAACAAGTT
*
22478342 TAATATAATGCATAAAAGCTATCTAAACTATTAAAACAAAACAATAACTACAAACTTGCATTTTT
196 TAATATAATGCAT-AAAGCTACCT-AACTATTAAAACAAAACAATAACTACAAACTTGCATTTTT
* * * ** *
22478407 GCCTTTCAATGGCATAAAAAGTCCTAAACAAATGTAAACCGTAACCTTTTTCACACATGTAT-AA
259 ACCTTTCAACGGCACAAAAAGTCCTAAACAAACATAAACAGT-ACCTTTTTCACACA--TATCAA
* * * * *
22478471 -TGAAAACCACGTTCAATCATTCAGACAAGTTTAATATCATGTATTTAAGCTATCT-AACTTTCT
321 CTGAAAACCAAGTTCAATCATTCAAACAAGTTTAATATAATGTATTGAAGCTATCTAAACTGT-T
* * *
22478534 AAAATAAAACAATAACTACAAA-TTAGTATTTTTACCTTTTAACAGCA-CAAAAGTCATAAATAG
385 AAAATAAAACAATAACTACAAACTT-GCATTTTTACCTTTTAACAGCATAAAAAGTCATAAACAG
* ***
22478597 ACATAAAAC-ATAACTTTTTCACACATATCAA-C-CGTAAAAAACTAAGTTCAATCATTCGGGCA
449 ACAT-AAACGATAACTTTTTCACACATATCAATCACG---AAAACCAAGTTCAATCATTCAAACA
* * * * * * *
22478659 AGTTTAATATCATATATTGA-ACTATCTAAGCTGTTAAAATAGAATAGTAACTATATATTTATAT
510 AGTTTAATATCATATATTGATACTATCTAAACTGTTAAAATAGAACAATAACTACAAACTTACAT
* * *
22478723 TTTTGCCTTTTAA-AGACACAAAAAGTTCATAAACAAACA
575 TTTTACCTTTCAACAG-CACAAAAAGTGC-TAAACAAACA
22478762 TAAAGTATAA
Statistics
Matches: 518, Mismatches: 83, Indels: 26
0.83 0.13 0.04
Matches are distributed among these distances:
640 2 0.00
641 3 0.01
642 166 0.32
643 264 0.51
644 65 0.13
645 13 0.03
646 2 0.00
647 3 0.01
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (641 bp):
CATAAAAACCATGTTCAATCATTCAAACAAGTTTAATATCATGTATTTAAGCTATCTAAACTGTT
AAAATAGAACAAAAACTACATAATTACAATTTTACCCCTTAACAACACAAAAAGTCCAAAACAAA
CATAAAACCACAACTTGTTCACACATATCAATCATGAAAACCAAGTTTAATCATTCAAACAAGTT
TAATATAATGCATAAAGCTACCTAACTATTAAAACAAAACAATAACTACAAACTTGCATTTTTAC
CTTTCAACGGCACAAAAAGTCCTAAACAAACATAAACAGTACCTTTTTCACACATATCAACTGAA
AACCAAGTTCAATCATTCAAACAAGTTTAATATAATGTATTGAAGCTATCTAAACTGTTAAAATA
AAACAATAACTACAAACTTGCATTTTTACCTTTTAACAGCATAAAAAGTCATAAACAGACATAAA
CGATAACTTTTTCACACATATCAATCACGAAAACCAAGTTCAATCATTCAAACAAGTTTAATATC
ATATATTGATACTATCTAAACTGTTAAAATAGAACAATAACTACAAACTTACATTTTTACCTTTC
AACAGCACAAAAAGTGCTAAACAAACAAAATTGCAACTTTTTTCACACGTATAAAC
Found at i:22482149 original size:21 final size:21
Alignment explanation
Indices: 22482125--22482165 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
22482115 AACTTTGAAC
*
22482125 ATCAACATTACCAACTTGAGT
1 ATCAACATCACCAACTTGAGT
*
22482146 ATCAACATCACCAATTTGAG
1 ATCAACATCACCAACTTGAG
22482166 GAATAAGAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.39, C:0.24, G:0.10, T:0.27
Consensus pattern (21 bp):
ATCAACATCACCAACTTGAGT
Done.