Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 141 of 190
Found at i:22931666 original size:40 final size:41
Alignment explanation
Indices: 22931555--22931950 Score: 239
Period size: 41 Copynumber: 9.9 Consensus size: 41
22931545 AAAACCATAG
* ** *
22931555 ATTTTT-AAATGATTTCCAAGACCT-TCGGCAAAATTCTAA
1 ATTTTTGAAATGATTTTCAAGACCTCTAAGCAAAATTTTAA
* * * *
22931594 ATCTTTG-AATGA-TTTCAAAACCTCTAACCAAAATTTTAG
1 ATTTTTGAAATGATTTTCAAGACCTCTAAGCAAAATTTTAA
* *
22931633 ATTTTTGAACT-ATTTTCAAGACCTCTGAA-CAAAACTTTAA
1 ATTTTTGAAATGATTTTCAAGACCTCT-AAGCAAAATTTTAA
* *
22931673 ATTTTT-AAATGATTTTCAAATACCTCTAAGC-AAATCTTAA
1 ATTTTTGAAATGATTTTC-AAGACCTCTAAGCAAAATTTTAA
* * * *
22931713 ATCTTTG-AATGATCTCCAAGACCTCCAAGCAAAATTTTAA
1 ATTTTTGAAATGATTTTCAAGACCTCTAAGCAAAATTTTAA
* * ** *
22931753 ATTTTCGAAA-GATTTTCAAAGACCTCTAGGTGAAA-TTTCA
1 ATTTTTGAAATGATTTTC-AAGACCTCTAAGCAAAATTTTAA
* ** * * *
22931793 ATTTTTTAAATGA-CCTCGAAAGATCTCCAAGCAAAATCTTAA
1 ATTTTTGAAATGATTTTC--AAGACCTCTAAGCAAAATTTTAA
* * * * *
22931835 ATTTCT-AAATGATTTCCAAAGACCTCCACGCAAAATTTTAG
1 ATTTTTGAAATGATTTTC-AAGACCTCTAAGCAAAATTTTAA
* * * ** * *
22931876 ATTTTTG-AATGATTTCCAAATACCTATGGGCCAAATCTTAA
1 ATTTTTGAAATGATTTTC-AAGACCTCTAAGCAAAATTTTAA
* *
22931917 ATTTTTG-AAGGATTTTCAAGATGCTC-AAGCAAAA
1 ATTTTTGAAATGATTTTCAAGA-CCTCTAAGCAAAA
22931951 CTTCAAAATT
Statistics
Matches: 271, Mismatches: 68, Indels: 35
0.72 0.18 0.09
Matches are distributed among these distances:
38 9 0.03
39 41 0.15
40 97 0.36
41 115 0.42
42 9 0.03
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (41 bp):
ATTTTTGAAATGATTTTCAAGACCTCTAAGCAAAATTTTAA
Found at i:22931733 original size:80 final size:79
Alignment explanation
Indices: 22931562--22931780 Score: 209
Period size: 80 Copynumber: 2.7 Consensus size: 79
22931552 TAGATTTTTA
* * *
22931562 AATGATTTCCAAGACCT-TCG-GCAAAATTCTAAATCTTTGAATGA-TTTCAAAACCTCTAACCA
1 AATGATTTCCAAGACCTCT-GAACAAAATT-TAAATTTTTAAATGATTTTCAAAACCTCTAACCA
* * *
22931624 AAATTTTAGATTTTTG
64 AAATCTTAAATCTTTG
* *
22931640 AACT-ATTTTCAAGACCTCTGAACAAAACTTTAAATTTTTAAATGATTTTCAAATACCTCTAAGC
1 AA-TGATTTCCAAGACCTCTGAACAAAA-TTTAAATTTTTAAATGATTTTCAAA-ACCTCTAACC
22931704 -AAATCTTAAATCTTTG
63 AAAATCTTAAATCTTTG
* * *
22931720 AATGATCTCCAAGACCTC-CAAGCAAAATTTTAAATTTTCGAAA-GATTTTCAAAGACCTCTA
1 AATGATTTCCAAGACCTCTGAA-CAAAA-TTTAAATTTT-TAAATGATTTTCAAA-ACCTCTA
22931781 GGTGAAATTT
Statistics
Matches: 118, Mismatches: 14, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
78 15 0.13
79 23 0.19
80 68 0.58
81 12 0.10
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.35
Consensus pattern (79 bp):
AATGATTTCCAAGACCTCTGAACAAAATTTAAATTTTTAAATGATTTTCAAAACCTCTAACCAAA
ATCTTAAATCTTTG
Found at i:22931881 original size:82 final size:79
Alignment explanation
Indices: 22931601--22931887 Score: 228
Period size: 80 Copynumber: 3.6 Consensus size: 79
22931591 TAAATCTTTG
* ** *
22931601 AATGA-TTTCAAA-ACCTCTAACCAAAATTTTAGATTTTTGAACT-ATTTTC-AAGACCTCTGAA
1 AATGATTTTCAAAGACCTCTAAGC-AAATTTTA-ATTTTTGAA-TGA-CCTCAAAGACCTC-CAA
*
22931662 -CAAAA-CTTTAAATTTTTA
61 GCAAAATC-TTAAATTTCTA
* * * * *
22931680 AATGATTTTCAAATACCTCTAAGCAAATCTTAAATCTTTGAATGATCTCCAAGACCTCCAAGCAA
1 AATGATTTTCAAAGACCTCTAAGCAAAT-TTTAATTTTTGAATGACCTCAAAGACCTCCAAGCAA
* *
22931745 AATTTTAAATTTTCGA
65 AATCTTAAA-TTTCTA
* * * * *
22931761 AA-GATTTTCAAAGACCTCTAGGTGAAATTTCAATTTTTTAAATGACCTCGAAAGATCTCCAAGC
1 AATGATTTTCAAAGACCTCTAAG-CAAATTTTAA-TTTTTGAATGACCTC-AAAGACCTCCAAGC
22931825 AAAATCTTAAATTTCTA
63 AAAATCTTAAATTTCTA
* * *
22931842 AATGATTTCCAAAGACCTCCACGCAAAATTTTAGATTTTTGAATGA
1 AATGATTTTCAAAGACCTCTAAGC-AAATTTTA-ATTTTTGAATGA
22931888 TTTCCAAATA
Statistics
Matches: 169, Mismatches: 25, Indels: 25
0.77 0.11 0.11
Matches are distributed among these distances:
79 11 0.07
80 60 0.36
81 41 0.24
82 56 0.33
83 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.34
Consensus pattern (79 bp):
AATGATTTTCAAAGACCTCTAAGCAAATTTTAATTTTTGAATGACCTCAAAGACCTCCAAGCAAA
ATCTTAAATTTCTA
Found at i:22932858 original size:18 final size:15
Alignment explanation
Indices: 22932838--22932895 Score: 57
Period size: 15 Copynumber: 3.8 Consensus size: 15
22932828 AATAAAAATA
*
22932838 AAAAATAATAATGCCT
1 AAAAA-AATAAAGCCT
22932854 AAAAAAATAAAGCCT
1 AAAAAAATAAAGCCT
*
22932869 -AAAAAATGAAATCC-
1 AAAAAAAT-AAAGCCT
22932883 AAATAAAATAAAG
1 AAA-AAAATAAAG
22932896 ACTCGAATAG
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
14 7 0.19
15 19 0.53
16 10 0.28
ACGTcount: A:0.66, C:0.10, G:0.07, T:0.17
Consensus pattern (15 bp):
AAAAAAATAAAGCCT
Found at i:22933687 original size:22 final size:22
Alignment explanation
Indices: 22933652--22933713 Score: 65
Period size: 22 Copynumber: 2.8 Consensus size: 22
22933642 CCTTAAACAA
* *
22933652 AAAAAATCAAATAAAAA-ATAT
1 AAAAAATAAAATAAAAAGACAT
22933673 AAAAAATAAATATAAAAAGACAT
1 AAAAAATAAA-ATAAAAAGACAT
*
22933696 AAAAATGTAAAA-AAAAAG
1 AAAAA-ATAAAATAAAAAG
22933714 TTGGCAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
21 9 0.26
22 13 0.37
23 9 0.26
24 4 0.11
ACGTcount: A:0.76, C:0.03, G:0.05, T:0.16
Consensus pattern (22 bp):
AAAAAATAAAATAAAAAGACAT
Found at i:22933737 original size:8 final size:8
Alignment explanation
Indices: 22933721--22933753 Score: 52
Period size: 7 Copynumber: 4.4 Consensus size: 8
22933711 AAGTTGGCAA
22933721 AAAAT-AT
1 AAAATAAT
22933728 AAAATAAT
1 AAAATAAT
22933736 AAAATAAT
1 AAAATAAT
22933744 -AAATAAT
1 AAAATAAT
22933751 AAA
1 AAA
22933754 GCTTGAAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
7 12 0.50
8 12 0.50
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAAATAAT
Found at i:22935068 original size:38 final size:39
Alignment explanation
Indices: 22935024--22935102 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 39
22935014 GATTTCTAGT
* *
22935024 ATTGATACTTTAG-TTTCCTTGTTCTTCATGTTGTTTGC
1 ATTGATACATTAGTTTTCCTTATTCTTCATGTTGTTTGC
*
22935062 ATTGATAGATTAGTTTTTCCTTATTCTTCATGTTGTTTGC
1 ATTGATACATTAG-TTTTCCTTATTCTTCATGTTGTTTGC
22935102 A
1 A
22935103 AAGGTTAAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
38 11 0.31
40 25 0.69
ACGTcount: A:0.16, C:0.14, G:0.15, T:0.54
Consensus pattern (39 bp):
ATTGATACATTAGTTTTCCTTATTCTTCATGTTGTTTGC
Found at i:22938148 original size:13 final size:13
Alignment explanation
Indices: 22938130--22938154 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22938120 TAATACTACT
22938130 AAATATATTTAAA
1 AAATATATTTAAA
22938143 AAATATATTTAA
1 AAATATATTTAA
22938155 TAAGTTTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AAATATATTTAAA
Found at i:22940168 original size:21 final size:21
Alignment explanation
Indices: 22940144--22940187 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
22940134 TATTTAGGAG
22940144 TAAGAGATTACA-TCTAAAGCA
1 TAAGAGATTACATTC-AAAGCA
*
22940165 TAAGAGATTGCATTCAAAGCA
1 TAAGAGATTACATTCAAAGCA
22940186 TA
1 TA
22940188 TCAAGTCAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.45, C:0.14, G:0.16, T:0.25
Consensus pattern (21 bp):
TAAGAGATTACATTCAAAGCA
Found at i:22948934 original size:23 final size:22
Alignment explanation
Indices: 22948908--22948989 Score: 67
Period size: 21 Copynumber: 3.4 Consensus size: 22
22948898 CATTTTTAAT
22948908 TTATTTTTTTAAATGTTCTAAAA
1 TTATTTTTTTAAAT-TTCTAAAA
*
22948931 TTATTTCATATTTTAAATATCTAAAA
1 TTA-TT--T-TTTTAAATTTCTAAAA
*
22948957 TTTTTATTTTTTTATATTTC-AAAA
1 ---TTATTTTTTTAAATTTCTAAAA
22948981 TTATTTTTT
1 TTATTTTTT
22948990 ATGATTTTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 16
0.72 0.04 0.24
Matches are distributed among these distances:
21 9 0.18
23 3 0.06
24 6 0.12
25 9 0.18
26 9 0.18
27 8 0.16
28 2 0.04
29 3 0.06
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.61
Consensus pattern (22 bp):
TTATTTTTTTAAATTTCTAAAA
Found at i:22949276 original size:14 final size:13
Alignment explanation
Indices: 22949254--22949304 Score: 52
Period size: 13 Copynumber: 3.9 Consensus size: 13
22949244 AGGACATTAT
22949254 ATTTTTAATTTTA
1 ATTTTTAATTTTA
22949267 ATTATTTAA--TTA
1 ATT-TTTAATTTTA
* *
22949279 ATTTTTTATTTTTT
1 A-TTTTTAATTTTA
22949293 ATTTTTAATTTT
1 ATTTTTAATTTT
22949305 TTTTTGGTCC
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
12 8 0.26
13 15 0.48
14 8 0.26
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (13 bp):
ATTTTTAATTTTA
Found at i:22949299 original size:13 final size:14
Alignment explanation
Indices: 22949253--22949305 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 14
22949243 TAGGACATTA
22949253 TATTTTTAATTTTAAT
1 TATTTTTAATTTT--T
22949269 TATTTAATTAATTTTT
1 TATTT--TTAATTTTT
*
22949285 TATTTTTTATTTTT
1 TATTTTTAATTTTT
*
22949299 AATTTTT
1 TATTTTT
22949306 TTTTGGTCCG
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
14 14 0.42
16 11 0.33
18 8 0.24
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (14 bp):
TATTTTTAATTTTT
Found at i:22949615 original size:13 final size:12
Alignment explanation
Indices: 22949597--22949640 Score: 54
Period size: 13 Copynumber: 3.6 Consensus size: 12
22949587 TTATGTGCAA
22949597 AAATATTAATGAT
1 AAATATTAAT-AT
22949610 AAATATTTAATAT
1 AAATA-TTAATAT
*
22949623 AAATATAAATAT
1 AAATATTAATAT
22949635 -AATATT
1 AAATATT
22949641 CGACCTATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 5 0.18
12 6 0.21
13 12 0.43
14 5 0.18
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (12 bp):
AAATATTAATAT
Found at i:22950026 original size:21 final size:20
Alignment explanation
Indices: 22950001--22950062 Score: 70
Period size: 21 Copynumber: 3.0 Consensus size: 20
22949991 CACGTGGTAT
22950001 TTTTTAATTTTATTGTTTTAA
1 TTTTTAATTTTATT-TTTTAA
* *
22950022 TTTTTAATTTTTTTTATTTGAT
1 TTTTTAATTTTATTT-TTT-AA
*
22950044 TTTTTAATTTGATTTTTTA
1 TTTTTAATTTTATTTTTTA
22950063 TTAGATAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
20 2 0.06
21 19 0.54
22 14 0.40
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (20 bp):
TTTTTAATTTTATTTTTTAA
Found at i:22950033 original size:22 final size:22
Alignment explanation
Indices: 22950001--22950053 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
22949991 CACGTGGTAT
* *
22950001 TTTTTAA-TTTTATTGTTTTAA
1 TTTTTAATTTTTATTATTTGAA
* *
22950022 TTTTTAATTTTTTTTATTTGAT
1 TTTTTAATTTTTATTATTTGAA
22950044 TTTTTAATTT
1 TTTTTAATTT
22950054 GATTTTTTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
21 7 0.26
22 20 0.74
ACGTcount: A:0.21, C:0.00, G:0.04, T:0.75
Consensus pattern (22 bp):
TTTTTAATTTTTATTATTTGAA
Found at i:22950046 original size:13 final size:13
Alignment explanation
Indices: 22949999--22950062 Score: 65
Period size: 13 Copynumber: 4.6 Consensus size: 13
22949989 TTCACGTGGT
*
22949999 ATTTTTTAATTTT
1 ATTTTTTAATTTG
*
22950012 ATTGTTTTAATTTTTA
1 ATT-TTTTAA--TTTG
*
22950028 ATTTTTTTTATTTG
1 A-TTTTTTAATTTG
22950042 ATTTTTTAATTTG
1 ATTTTTTAATTTG
22950055 ATTTTTTA
1 ATTTTTTA
22950063 TTAGATAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
13 22 0.51
14 10 0.23
16 9 0.21
17 2 0.05
ACGTcount: A:0.22, C:0.00, G:0.05, T:0.73
Consensus pattern (13 bp):
ATTTTTTAATTTG
Found at i:22951097 original size:2 final size:2
Alignment explanation
Indices: 22951090--22951130 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
22951080 TTTAATTCTA
22951090 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22951131 AAGATAAAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:22951321 original size:20 final size:18
Alignment explanation
Indices: 22951269--22951324 Score: 53
Period size: 20 Copynumber: 3.1 Consensus size: 18
22951259 TGGTAATATA
22951269 TAATAAAAATATAA-T-T
1 TAATAAAAATATAATTAT
* * *
22951285 TAATAATAATTTCATTAAT
1 TAATAAAAATATAATT-AT
22951304 CTAATAAAAATATAATTAT
1 -TAATAAAAATATAATTAT
22951323 TA
1 TA
22951325 TTTTGTCATG
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
16 11 0.37
17 1 0.03
18 2 0.07
19 3 0.10
20 13 0.43
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (18 bp):
TAATAAAAATATAATTAT
Found at i:22953504 original size:16 final size:16
Alignment explanation
Indices: 22953480--22953525 Score: 65
Period size: 16 Copynumber: 2.8 Consensus size: 16
22953470 AAATTAAATT
*
22953480 AATTAAAAAAAAGTCAA
1 AATTAAAAAAAA-ACAA
*
22953497 GATTAAAAAAAAACAA
1 AATTAAAAAAAAACAA
22953513 AATTAAAAAAAAA
1 AATTAAAAAAAAA
22953526 TCAGAAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
16 15 0.58
17 11 0.42
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.15
Consensus pattern (16 bp):
AATTAAAAAAAAACAA
Found at i:22953538 original size:17 final size:16
Alignment explanation
Indices: 22953500--22953538 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 16
22953490 AAGTCAAGAT
*
22953500 TAAAAAAAAACAAAAT
1 TAAAAAAAAACAAAAA
22953516 TAAAAAAAAATCAGAAAA
1 TAAAAAAAAA-CA-AAAA
22953534 TAAAA
1 TAAAA
22953539 TCAAAGTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 10 0.50
17 2 0.10
18 8 0.40
ACGTcount: A:0.79, C:0.05, G:0.03, T:0.13
Consensus pattern (16 bp):
TAAAAAAAAACAAAAA
Found at i:22953556 original size:18 final size:16
Alignment explanation
Indices: 22953482--22953555 Score: 66
Period size: 17 Copynumber: 4.7 Consensus size: 16
22953472 ATTAAATTAA
*
22953482 TTAAAAAAAAGTCAAG
1 TTAAAAAAAAATCAAG
*
22953498 ATTAAAAAAAAA-CAAAA
1 -TTAAAAAAAAATC-AAG
22953515 TTAAAAAAAAATC-AG
1 TTAAAAAAAAATCAAG
*
22953530 --AAAATAAAATCAAAG
1 TTAAAAAAAAATC-AAG
22953545 TTAAAAAAAAA
1 TTAAAAAAAAA
22953556 AAAAACAGAA
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
13 10 0.22
15 3 0.07
16 12 0.26
17 21 0.46
ACGTcount: A:0.73, C:0.05, G:0.05, T:0.16
Consensus pattern (16 bp):
TTAAAAAAAAATCAAG
Found at i:22959510 original size:16 final size:16
Alignment explanation
Indices: 22959489--22959528 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
22959479 TGATAAATGA
22959489 ATGATAATGATGATTT
1 ATGATAATGATGATTT
22959505 ATGATAATGATGATTT
1 ATGATAATGATGATTT
*
22959521 ACGATAAT
1 ATGATAAT
22959529 TTTTAATGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.40, C:0.03, G:0.17, T:0.40
Consensus pattern (16 bp):
ATGATAATGATGATTT
Found at i:22961471 original size:28 final size:29
Alignment explanation
Indices: 22961431--22961508 Score: 108
Period size: 28 Copynumber: 2.8 Consensus size: 29
22961421 TTTGGTTAAG
*
22961431 AATGATTGTTTGAAATCTTACAAGTGC-A
1 AATGATTGTTTGAAATCTTACAAGGGCAA
*
22961459 AATGATTGTTTG-AATTTTACAAGGGCAA
1 AATGATTGTTTGAAATCTTACAAGGGCAA
*
22961487 AAT-ATTGGTTGAAATCTTACAA
1 AATGATTGTTTGAAATCTTACAA
22961509 ATGATGATTT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
27 19 0.43
28 25 0.57
ACGTcount: A:0.37, C:0.09, G:0.18, T:0.36
Consensus pattern (29 bp):
AATGATTGTTTGAAATCTTACAAGGGCAA
Found at i:22964661 original size:19 final size:16
Alignment explanation
Indices: 22964622--22964658 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
22964612 TGATAAACGA
22964622 ATGATAATGATGATTT
1 ATGATAATGATGATTT
22964638 ATGATAATGATGATTT
1 ATGATAATGATGATTT
*
22964654 GTGAT
1 ATGAT
22964659 GATTTTTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.22, T:0.43
Consensus pattern (16 bp):
ATGATAATGATGATTT
Found at i:22964691 original size:17 final size:17
Alignment explanation
Indices: 22964671--22964703 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
22964661 TTTTTAATGA
22964671 TTGATTCATG-ATTTGAT
1 TTGATT-ATGTATTTGAT
22964688 TTGATTATGTATTTGA
1 TTGATTATGTATTTGA
22964704 ATGGTGGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.24, C:0.03, G:0.18, T:0.55
Consensus pattern (17 bp):
TTGATTATGTATTTGAT
Found at i:22966647 original size:27 final size:26
Alignment explanation
Indices: 22966617--22966682 Score: 69
Period size: 27 Copynumber: 2.5 Consensus size: 26
22966607 AGTTTAACAT
22966617 TTGAAGGAAAAATTCAGAGATTCGCA
1 TTGAAGGAAAAATTCAGAGATTCGCA
* * * * *
22966643 GTTGAAAGAAAATTTTATAGATTTGCA
1 -TTGAAGGAAAAATTCAGAGATTCGCA
22966670 TATGAAGGAAAAA
1 T-TGAAGGAAAAA
22966683 AATTTAGATA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
26 1 0.03
27 30 0.97
ACGTcount: A:0.45, C:0.06, G:0.21, T:0.27
Consensus pattern (26 bp):
TTGAAGGAAAAATTCAGAGATTCGCA
Found at i:22966883 original size:23 final size:23
Alignment explanation
Indices: 22966740--22966907 Score: 89
Period size: 23 Copynumber: 7.4 Consensus size: 23
22966730 AAAAGTTTTT
*
22966740 AAAGATTCGTATTT--AAAATTC
1 AAAGATTCATATTTGAAAAATTC
* *
22966761 AAAAATTTATATTT-AAAAATTTTC
1 AAAGATTCATATTTGAAAAA--TTC
* *
22966785 AAA-ATT-TTCATTTGAAATATTC
1 AAAGATTCAT-ATTTGAAAAATTC
* * * *
22966807 AAATATTCTTATTTCAAATATTC
1 AAAGATTCATATTTGAAAAATTC
* * *
22966830 GAAGAGTT-ATATTTGAAAATTTT
1 AAAGA-TTCATATTTGAAAAATTC
* *
22966853 GAATATTCATATTTGAAAAATTC
1 AAAGATTCATATTTGAAAAATTC
* * *
22966876 AAAGATTC-TCTTTTGAAAGATTT
1 AAAGATTCAT-ATTTGAAAAATTC
22966899 AAAGATTCA
1 AAAGATTCA
22966908 GAGTTTTACA
Statistics
Matches: 115, Mismatches: 21, Indels: 19
0.74 0.14 0.12
Matches are distributed among these distances:
21 11 0.10
22 14 0.12
23 76 0.66
24 14 0.12
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (23 bp):
AAAGATTCATATTTGAAAAATTC
Found at i:22967121 original size:32 final size:32
Alignment explanation
Indices: 22967063--22967123 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
22967053 CCCTAAACCC
* *
22967063 TATCGTGTGCTAGCTAAATCAGACTTAAATCT
1 TATCATGTGCTAGCTAAATCAAACTTAAATCT
*
22967095 TATCATGTGTTAGCTAAA-CTAAACTTAAA
1 TATCATGTGCTAGCTAAATC-AAACTTAAA
22967124 AATCTTATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 1 0.04
32 24 0.96
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.34
Consensus pattern (32 bp):
TATCATGTGCTAGCTAAATCAAACTTAAATCT
Found at i:22969510 original size:19 final size:19
Alignment explanation
Indices: 22969486--22969522 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
22969476 AAGAAATATT
22969486 CAAAAATCA-AAATTTAACC
1 CAAAAAT-ATAAATTTAACC
22969505 CAAAAATATAAATTTAAC
1 CAAAAATATAAATTTAAC
22969523 ATGGCAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 1 0.06
19 16 0.94
ACGTcount: A:0.59, C:0.16, G:0.00, T:0.24
Consensus pattern (19 bp):
CAAAAATATAAATTTAACC
Found at i:22971426 original size:16 final size:16
Alignment explanation
Indices: 22971405--22971437 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
22971395 TAACAACAAA
22971405 TATTCTAAGTATCTAG
1 TATTCTAAGTATCTAG
22971421 TATTCTAAGTATCTAG
1 TATTCTAAGTATCTAG
22971437 T
1 T
22971438 CTCAATTCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.45
Consensus pattern (16 bp):
TATTCTAAGTATCTAG
Found at i:22977094 original size:17 final size:17
Alignment explanation
Indices: 22977074--22977114 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
22977064 GAAATTTTTT
22977074 TAAAATAGAATA-AAAAA
1 TAAAATA-AATATAAAAA
22977091 TAAAATAAATATAAAAA
1 TAAAATAAATATAAAAA
*
22977108 CAAAATA
1 TAAAATA
22977115 TAGAAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (17 bp):
TAAAATAAATATAAAAA
Found at i:22977133 original size:14 final size:14
Alignment explanation
Indices: 22977092--22977135 Score: 58
Period size: 13 Copynumber: 3.3 Consensus size: 14
22977082 AATAAAAAAT
22977092 AAAATAAATATAA-
1 AAAATAAATATAAG
22977105 AAACA-AAATAT-AG
1 AAA-ATAAATATAAG
22977118 AAAATAAATATAAG
1 AAAATAAATATAAG
22977132 AAAA
1 AAAA
22977136 ACAAAAAAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
12 2 0.07
13 18 0.67
14 7 0.26
ACGTcount: A:0.75, C:0.02, G:0.05, T:0.18
Consensus pattern (14 bp):
AAAATAAATATAAG
Found at i:22978442 original size:18 final size:17
Alignment explanation
Indices: 22978410--22978448 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
22978400 CTATTTATGT
22978410 TTAAAATTCTTTTTTTA
1 TTAAAATTCTTTTTTTA
* *
22978427 TTAAATTTCATTTTTTTT
1 TTAAAATTC-TTTTTTTA
22978445 TTAA
1 TTAA
22978449 TCTTGATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (17 bp):
TTAAAATTCTTTTTTTA
Found at i:22978738 original size:16 final size:16
Alignment explanation
Indices: 22978719--22978851 Score: 58
Period size: 16 Copynumber: 8.2 Consensus size: 16
22978709 AGGATTAAAT
22978719 GTTTAGGGTTTTAAGG
1 GTTTAGGGTTTTAAGG
* *
22978735 GTTTAAGGTTTGAAAGG
1 GTTTAGGGTTT-TAAGG
* *
22978752 TTTTAGGGTTTGAA-G
1 GTTTAGGGTTTTAAGG
* *
22978767 GTCTAGGG-TTT-AGAA
1 GTTTAGGGTTTTAAG-G
* *
22978782 ATCTTAGGGTTTTAGGG
1 GT-TTAGGGTTTTAAGG
**
22978799 GTTTTAGATTTTTAA-G
1 G-TTTAGGGTTTTAAGG
* ***
22978815 GTTTTGACAATTTAAGG
1 GTTTAG-GGTTTTAAGG
*
22978832 GTTTAGGGTTTTGAGG
1 GTTTAGGGTTTTAAGG
22978848 GTTT
1 GTTT
22978852 GAAAGGTTTT
Statistics
Matches: 82, Mismatches: 26, Indels: 18
0.65 0.21 0.14
Matches are distributed among these distances:
13 1 0.01
14 2 0.02
15 12 0.15
16 34 0.41
17 31 0.38
18 2 0.02
ACGTcount: A:0.22, C:0.02, G:0.32, T:0.44
Consensus pattern (16 bp):
GTTTAGGGTTTTAAGG
Found at i:22978756 original size:17 final size:17
Alignment explanation
Indices: 22978731--22978765 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
22978721 TTAGGGTTTT
22978731 AAGGGTTTAAGGTTTGA
1 AAGGGTTTAAGGTTTGA
* *
22978748 AAGGTTTTAGGGTTTGA
1 AAGGGTTTAAGGTTTGA
22978765 A
1 A
22978766 GGTCTAGGGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.00, G:0.34, T:0.37
Consensus pattern (17 bp):
AAGGGTTTAAGGTTTGA
Found at i:22979318 original size:12 final size:12
Alignment explanation
Indices: 22979290--22979327 Score: 58
Period size: 12 Copynumber: 3.0 Consensus size: 12
22979280 ATTTTTGTTA
22979290 TTGTTATTATTATT
1 TTGTTATT-TTA-T
22979304 TTGTTATTTTAT
1 TTGTTATTTTAT
22979316 TTGTTATTTTAT
1 TTGTTATTTTAT
22979328 ATTATTTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 13 0.54
13 3 0.12
14 8 0.33
ACGTcount: A:0.18, C:0.00, G:0.08, T:0.74
Consensus pattern (12 bp):
TTGTTATTTTAT
Found at i:22979330 original size:14 final size:14
Alignment explanation
Indices: 22979290--22979330 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
22979280 ATTTTTGTTA
22979290 TTGTTATTATTAT-T
1 TTGTTATT-TTATAT
22979304 TTGTTA-TTT-TAT
1 TTGTTATTTTATAT
22979316 TTGTTATTTTATAT
1 TTGTTATTTTATAT
22979330 T
1 T
22979331 ATTTAATAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
11 1 0.04
12 9 0.38
13 4 0.17
14 10 0.42
ACGTcount: A:0.20, C:0.00, G:0.07, T:0.73
Consensus pattern (14 bp):
TTGTTATTTTATAT
Found at i:22980898 original size:15 final size:15
Alignment explanation
Indices: 22980878--22980908 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
22980868 GTTTGCAGGA
22980878 TTTTTTTTT-CTAAT
1 TTTTTTTTTGCTAAT
22980892 TTTTTTTTTGCTAAT
1 TTTTTTTTTGCTAAT
22980907 TT
1 TT
22980909 GAGCTTTGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.13, C:0.06, G:0.03, T:0.77
Consensus pattern (15 bp):
TTTTTTTTTGCTAAT
Found at i:22992203 original size:14 final size:14
Alignment explanation
Indices: 22992181--22992277 Score: 74
Period size: 14 Copynumber: 7.1 Consensus size: 14
22992171 TTAAAACCAC
22992181 AATTGAAACCCTAA
1 AATTGAAACCCTAA
*
22992195 AACTGAAACTCC-AA
1 AATTGAAAC-CCTAA
* *
22992209 AATTAAAACCCTCA
1 AATTGAAACCCTAA
* *
22992223 AATCGAAACCTTAA
1 AATTGAAACCCTAA
*
22992237 AATTCAAACCCTAA
1 AATTGAAACCCTAA
* ** *
22992251 AGTCAAAACTCT-A
1 AATTGAAACCCTAA
22992264 AA-TGAAACCCTAA
1 AATTGAAACCCTAA
22992277 A
1 A
22992278 TCCTAGGTGA
Statistics
Matches: 61, Mismatches: 19, Indels: 7
0.70 0.22 0.08
Matches are distributed among these distances:
12 6 0.10
13 6 0.10
14 47 0.77
15 2 0.03
ACGTcount: A:0.51, C:0.25, G:0.05, T:0.20
Consensus pattern (14 bp):
AATTGAAACCCTAA
Found at i:22992290 original size:19 final size:20
Alignment explanation
Indices: 22992266--22992317 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
22992256 AAACTCTAAA
22992266 TGAAACCCTAAATCCTAG-G
1 TGAAACCCTAAATCCTAGAG
* *
22992285 TGAAACCCAAAACCCTAGAG
1 TGAAACCCTAAATCCTAGAG
22992305 TGAAACCCTAAAT
1 TGAAACCCTAAAT
22992318 TCACTCAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 16 0.57
20 12 0.43
ACGTcount: A:0.42, C:0.27, G:0.13, T:0.17
Consensus pattern (20 bp):
TGAAACCCTAAATCCTAGAG
Found at i:22992334 original size:18 final size:19
Alignment explanation
Indices: 22992307--22992344 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
22992297 CCCTAGAGTG
*
22992307 AAACCCTAAATTCA-CTCA
1 AAACCCTAAAATCACCTCA
*
22992325 AAACCTTAAAATCACCTCA
1 AAACCCTAAAATCACCTCA
22992344 A
1 A
22992345 GATTCCAAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.21
Consensus pattern (19 bp):
AAACCCTAAAATCACCTCA
Found at i:22994064 original size:24 final size:24
Alignment explanation
Indices: 22994037--22994087 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 24
22994027 TAAAAAAATC
22994037 AATGAG-AACAAAAACTAAAAA-TAA
1 AATGAGTAA-AAAAA-TAAAAATTAA
22994061 AATGAGTTAAAAAAATAAAAATTAA
1 AATGAG-TAAAAAAATAAAAATTAA
22994086 AA
1 AA
22994088 AATAAAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
24 12 0.50
25 10 0.42
26 2 0.08
ACGTcount: A:0.71, C:0.04, G:0.08, T:0.18
Consensus pattern (24 bp):
AATGAGTAAAAAAATAAAAATTAA
Found at i:22994107 original size:20 final size:20
Alignment explanation
Indices: 22994071--22994109 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
22994061 AATGAGTTAA
*
22994071 AAAAATAAAAATTAAAAAAT
1 AAAAATAAAAATGAAAAAAT
22994091 AAAAAT-AAAATAGAAAAAA
1 AAAAATAAAAAT-GAAAAAA
22994110 GAAACCTTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (20 bp):
AAAAATAAAAATGAAAAAAT
Found at i:22994449 original size:29 final size:30
Alignment explanation
Indices: 22994417--22994481 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
22994407 CTTGTGTTCT
*
22994417 TAAAAAAACCTAAATTTT-CTAGAAATCCC
1 TAAAAAAACCCAAATTTTCCTAGAAATCCC
*
22994446 TAAAAAATCCCAAATTTTCCTAGAAATCCC
1 TAAAAAAACCCAAATTTTCCTAGAAATCCC
22994476 TAAAAA
1 TAAAAA
22994482 TTCACCAAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.49, C:0.22, G:0.03, T:0.26
Consensus pattern (30 bp):
TAAAAAAACCCAAATTTTCCTAGAAATCCC
Found at i:22994469 original size:30 final size:29
Alignment explanation
Indices: 22994417--22994490 Score: 103
Period size: 30 Copynumber: 2.5 Consensus size: 29
22994407 CTTGTGTTCT
* *
22994417 TAAAAAAACCTAAATTTTCTAGAAATCCC
1 TAAAAAATCCCAAATTTTCTAGAAATCCC
22994446 TAAAAAATCCCAAATTTTCCTAGAAATCCC
1 TAAAAAATCCCAAATTTT-CTAGAAATCCC
*
22994476 TAAAAATTCACCAAA
1 TAAAAAATC-CCAAA
22994491 GCCTCCATAA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
29 16 0.40
30 19 0.47
31 5 0.12
ACGTcount: A:0.49, C:0.23, G:0.03, T:0.26
Consensus pattern (29 bp):
TAAAAAATCCCAAATTTTCTAGAAATCCC
Found at i:22994482 original size:29 final size:29
Alignment explanation
Indices: 22994417--22994490 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
22994407 CTTGTGTTCT
* * *
22994417 TAAAAAAACCTAAATTTTCTAGAAATCCC
1 TAAAAAATCCCAAATTTTCCAGAAATCCC
22994446 TAAAAAATCCCAAATTTTCCTAGAAATCCC
1 TAAAAAATCCCAAATTTTCC-AGAAATCCC
*
22994476 TAAAAATTCACCAAA
1 TAAAAAATC-CCAAA
22994491 GCCTCCATAA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 17 0.44
30 17 0.44
31 5 0.13
ACGTcount: A:0.49, C:0.23, G:0.03, T:0.26
Consensus pattern (29 bp):
TAAAAAATCCCAAATTTTCCAGAAATCCC
Found at i:22994898 original size:3 final size:3
Alignment explanation
Indices: 22994863--22994926 Score: 84
Period size: 3 Copynumber: 23.0 Consensus size: 3
22994853 ACAAAAAGAA
*
22994863 AAT AAG AAT AA- AAT -AT AAT -AT AAT AA- AAT -AT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
22994906 AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT
22994927 GACATATTAT
Statistics
Matches: 54, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
2 10 0.19
3 44 0.81
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:22995948 original size:342 final size:342
Alignment explanation
Indices: 22995314--22995932 Score: 780
Period size: 342 Copynumber: 1.8 Consensus size: 342
22995304 TGATGCTACA
*
22995314 AGTTTGAAGATAATCTGACTTGAGTCGAGATTAGATGATTGGGACAACACAGTGAGTCTAAAGGC
1 AGTTTGAAGATAATCTGACCTGAGTCGAGATTAGATGATTGGGACAACACAGTGAGTCTAAAGGC
* * ** ** * * *
22995379 GACTAAGACCAAGTTGAGGTCATAGGTAAATGACCAGATTGATGTCACGAGTCTAAAGATAATTT
66 AACGAAGACCAAGTCAAGGTCATAAATAAATGACCAGACTAATCTCACGAGTCTAAAGATAATTT
* ** * * **
22995444 GACTTAAGTCTAAATCAAATGACTGGGATGATGTCATAAGTTTGAAGGTGACTAAGACTGAGTCA
131 GACCTAAGTCTAAATCAAATGACTAAGATAATGTCATAAGTCTGAAGGCAACTAAGACTGAGTCA
* *
22995509 AGGTCATAAATAAATGATCGAACTAATGCCATGAGTCTGAAAATGATTTGACCTAAGTCGAGATC
196 AGGTCATAAATAAATGATCGAACTAATGCCATGAGTCTGAAAATGATCTAACCTAAGTCGAGATC
* *
22995574 AGATGATTGGGACGATGCTACGAGTCTAAAAATTACCAAAACCAAGTTGAGGTTGTAGCTAAATG
261 AGATGACTGAGACGATGCTACGAGTCTAAAAATTACCAAAACCAAGTTGAGGTTGTAGCTAAATG
22995639 ACTAGACCGATGTCATG
326 ACTAGACCGATGTCATG
* * *** *
22995656 AGTTTGAAGATGATCTGACCTGAGTTGAGATTAGATGATTGGGACGATGTC-GTGAGTCTGAAGG
1 AGTTTGAAGATAATCTGACCTGAGTCGAGATTAGATGATTGGGAC-AACACAGTGAGTCTAAAGG
* * * * * *
22995720 TAACGAAGATCGAGTCAAGGTCGTAAATAAATGACCAGACTAATACT-ACGAGTCTGAAGATGAT
65 CAACGAAGACCAAGTCAAGGTCATAAATAAATGACCAGACTAAT-CTCACGAGTCTAAAGATAAT
* * *
22995784 TTGACCTGAGTC-AAGATCAGATGACTAAGATAATGTCGTAAGTCTGAAGGCAACTAAGA-TCGA
129 TTGACCTAAGTCTAA-ATCAAATGACTAAGATAATGTCATAAGTCTGAAGGCAACTAAGACT-GA
* * *
22995847 GTTAAGGTCATAAATAAATGATC-AGACTAATGCTATGAGTCTGAAGATGATCTAACCTAAGTCG
192 GTCAAGGTCATAAATAAATGATCGA-ACTAATGCCATGAGTCTGAAAATGATCTAACCTAAGTCG
* * *
22995911 ATATTAGATGACTGAGATGATG
256 AGATCAGATGACTGAGACGATG
22995933 TCATGAGTTT
Statistics
Matches: 230, Mismatches: 42, Indels: 10
0.82 0.15 0.04
Matches are distributed among these distances:
341 4 0.02
342 223 0.97
343 3 0.01
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.26
Consensus pattern (342 bp):
AGTTTGAAGATAATCTGACCTGAGTCGAGATTAGATGATTGGGACAACACAGTGAGTCTAAAGGC
AACGAAGACCAAGTCAAGGTCATAAATAAATGACCAGACTAATCTCACGAGTCTAAAGATAATTT
GACCTAAGTCTAAATCAAATGACTAAGATAATGTCATAAGTCTGAAGGCAACTAAGACTGAGTCA
AGGTCATAAATAAATGATCGAACTAATGCCATGAGTCTGAAAATGATCTAACCTAAGTCGAGATC
AGATGACTGAGACGATGCTACGAGTCTAAAAATTACCAAAACCAAGTTGAGGTTGTAGCTAAATG
ACTAGACCGATGTCATG
Found at i:22995981 original size:342 final size:343
Alignment explanation
Indices: 22995314--22996049 Score: 741
Period size: 342 Copynumber: 2.2 Consensus size: 343
22995304 TGATGCTACA
* * * ***
22995314 AGTTTGAAGATAATCTGACTTGAGTCGAGATTAGATGATTGGGAC-AACACAGTGAGTCTAAAGG
1 AGTTTGAAGATGATCTGACCTGAGTTGAGATTAGATGATTGGGACGATGTCAGTGAGTCTAAAGG
* * ** ** * * *
22995378 CGACTAAGACCAAGTTGAGGTCATAGGTAAATGACCAGATTGATGTCACGAGTCTAAAGATAATT
66 CAACGAAGACCAAGTCAAGGTCATAAATAAATGACCAGACTAATCTCACGAGTCTAAAGATAATT
* ** * * **
22995443 TGACTTAAGTCTAAATCAAATGACTGGGATGATGTCATAAGTTTGAAGGTGACTAAGACTGAGTC
131 TGACCTAAGTCTAAATCAAATGACTAAGATAATGTCATAAGTCTGAAGGCAACTAAGACTGAGTC
* *
22995508 AAGGTCATAAATAAATGATCGAACTAATGCCATGAGTCTGAAAATGATTTGACCTAAGTCGAGAT
196 AAGGTCATAAATAAATGATCGAACTAATGCCATGAGTCTGAAAATGATCTAACCTAAGTCGAGAT
* * * ** ** *
22995573 CAGATGATTGGGACGATGCTACGAGTCTAAAAATTACCAAAACCAAGTTGAGGTTGTAGCTAAAT
261 CAGATGACTGAGACGATGCTACGAGTCTAAAAATGACCAAAACCAAGTCAAGGTCATAGATAAAT
* *
22995638 GA-CTAGACCGATGTCATG
326 GATC-AAACCGATATCATG
*
22995656 AGTTTGAAGATGATCTGACCTGAGTTGAGATTAGATGATTGGGACGATGTC-GTGAGTCTGAAGG
1 AGTTTGAAGATGATCTGACCTGAGTTGAGATTAGATGATTGGGACGATGTCAGTGAGTCTAAAGG
* * * * * *
22995720 TAACGAAGATCGAGTCAAGGTCGTAAATAAATGACCAGACTAATACT-ACGAGTCTGAAGATGAT
66 CAACGAAGACCAAGTCAAGGTCATAAATAAATGACCAGACTAAT-CTCACGAGTCTAAAGATAAT
* * *
22995784 TTGACCTGAGTC-AAGATCAGATGACTAAGATAATGTCGTAAGTCTGAAGGCAACTAAGA-TCGA
130 TTGACCTAAGTCTAA-ATCAAATGACTAAGATAATGTCATAAGTCTGAAGGCAACTAAGACT-GA
* * *
22995847 GTTAAGGTCATAAATAAATGATC-AGACTAATGCTATGAGTCTGAAGATGATCTAACCTAAGTCG
193 GTCAAGGTCATAAATAAATGATCGA-ACTAATGCCATGAGTCTGAAAATGATCTAACCTAAGTCG
* * * * * ** * ***
22995911 ATATTAGATGACTGAGATGATG-TCATGAGTTTAAAAATGATTAAGAGTGAGTCAAGGTCATAGA
257 AGATCAGATGACTGAGACGATGCT-ACGAGTCTAAAAATGACCAAAACCAAGTCAAGGTCATAGA
* **
22995975 TAAATGATCAAACTGATATTGTG
321 TAAATGATCAAACCGATATCATG
* * * * * * * *
22995998 AGTCTAAAGATGATCTGACCTAAGTTAAGATCAAATGATTAGGATGATGTCA
1 AGTTTGAAGATGATCTGACCTGAGTTGAGATTAGATGATTGGGACGATGTCA
22996050 CGAGTTCAAA
Statistics
Matches: 317, Mismatches: 69, Indels: 15
0.79 0.17 0.04
Matches are distributed among these distances:
341 5 0.02
342 308 0.97
343 4 0.01
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.27
Consensus pattern (343 bp):
AGTTTGAAGATGATCTGACCTGAGTTGAGATTAGATGATTGGGACGATGTCAGTGAGTCTAAAGG
CAACGAAGACCAAGTCAAGGTCATAAATAAATGACCAGACTAATCTCACGAGTCTAAAGATAATT
TGACCTAAGTCTAAATCAAATGACTAAGATAATGTCATAAGTCTGAAGGCAACTAAGACTGAGTC
AAGGTCATAAATAAATGATCGAACTAATGCCATGAGTCTGAAAATGATCTAACCTAAGTCGAGAT
CAGATGACTGAGACGATGCTACGAGTCTAAAAATGACCAAAACCAAGTCAAGGTCATAGATAAAT
GATCAAACCGATATCATG
Found at i:22996079 original size:342 final size:342
Alignment explanation
Indices: 22995424--22996257 Score: 743
Period size: 342 Copynumber: 2.4 Consensus size: 342
22995414 AGATTGATGT
* * * * ** * *
22995424 CACGAGTCTAAAGATAATTTGACTTAAGTCTAA-ATCAAATGACTGGGATGATGTCATAAGTTTG
1 CACGAGTCTGAAGATGATTTGACCTAAGTC-AAGATCAGATGACTAAGATAATGTCATAAGTCTG
**
22995488 AAGGTGACTAAGACTGAGTCAAGGTCATAAATAAATGATCGAACTAATGCCATGAGTCTGAAAAT
65 AAGGCAACTAAGACTGAGTCAAGGTCATAAATAAATGATCGAACTAATGCCATGAGTCTGAAAAT
* * * * *
22995553 GATTTGACCTAAGTCGAGATCAGATGATTGGGACGATGCTACGAGTCTAAAAATTACCAAAACCA
130 GATCTAACCTAAGTCGAGATCAGATGACTGAGACGATGCTACGAGTCTAAAAATGACCAAAACCA
** ** * * * * * * *
22995618 AGTTGAGGTTGTAGCTAAATGACTAGACCGATGTCATGAGTTTGAAGATGATCTGACCTGAGTTG
195 AGTCAAGGTCATAGATAAATGACTAAACCGATATCATGAGTCTAAAGATGATCTGACCTAAGTTA
* * * ** * * * **
22995683 AGATTAGATGATTGGGACGATGTCGTGAGTCTGAAGGTAACGAAGATCGAGTCAAGGTCGTAAAT
260 AGATCAAATGATTAGGACGATGTCACGAGTCTAAAAGTAACCAAGATCGAGTCAAGGTCACAAAT
*
22995748 AAATGACCAGACTAATAC
325 AAATGACCAAACTAATAC
* * *
22995766 TACGAGTCTGAAGATGATTTGACCTGAGTCAAGATCAGATGACTAAGATAATGTCGTAAGTCTGA
1 CACGAGTCTGAAGATGATTTGACCTAAGTCAAGATCAGATGACTAAGATAATGTCATAAGTCTGA
* * *
22995831 AGGCAACTAAGA-TCGAGTTAAGGTCATAAATAAATGATC-AGACTAATGCTATGAGTCTGAAGA
66 AGGCAACTAAGACT-GAGTCAAGGTCATAAATAAATGATCGA-ACTAATGCCATGAGTCTGAAAA
* * * * * ** * *
22995894 TGATCTAACCTAAGTCGATATTAGATGACTGAGATGATG-TCATGAGTTTAAAAATGATTAAGAG
129 TGATCTAACCTAAGTCGAGATCAGATGACTGAGACGATGCT-ACGAGTCTAAAAATGACCAAAAC
** * **
22995958 TGAGTCAAGGTCATAGATAAATGA-TCAAACTGATATTGTGAGTCTAAAGATGATCTGACCTAAG
193 CAAGTCAAGGTCATAGATAAATGACT-AAACCGATATCATGAGTCTAAAGATGATCTGACCTAAG
* * *
22996022 TTAAGATCAAATGATTAGGATGATGTCACGAGT-TCAAAAGTGACCAAGA-CTGAGTCAATGTCA
257 TTAAGATCAAATGATTAGGACGATGTCACGAGTCT-AAAAGTAACCAAGATC-GAGTCAAGGTCA
* *
22996085 CAAATAAATGATCAAACTGATAC
320 CAAATAAATGACCAAACTAATAC
** * * * * ** * ** **
22996108 CGTGAGTTTGAAAATGATTTGACCTAAGTTAAGATCAGATGATTGGGATGATGTCACGAGTTCAA
1 CACGAGTCTGAAGATGATTTGACCTAAGTCAAGATCAGATGACTAAGATAATGTCATAAG-TCTG
* * * * * * * * *
22996173 AAGTG--ACCAAGATTGAGTCGAGGTCATAGATAAATGATC-AGACTGATGTCATAAATCTGAAG
65 AAG-GCAACTAAGACTGAGTCAAGGTCATAAATAAATGATCGA-ACTAATGCCATGAGTCTGAAA
*
22996235 ATGATCTAACCTGAGTCGAGATC
128 ATGATCTAACCTAAGTCGAGATC
22996258 GAAACCTATG
Statistics
Matches: 392, Mismatches: 90, Indels: 20
0.78 0.18 0.04
Matches are distributed among these distances:
341 8 0.02
342 377 0.96
343 6 0.02
344 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.27
Consensus pattern (342 bp):
CACGAGTCTGAAGATGATTTGACCTAAGTCAAGATCAGATGACTAAGATAATGTCATAAGTCTGA
AGGCAACTAAGACTGAGTCAAGGTCATAAATAAATGATCGAACTAATGCCATGAGTCTGAAAATG
ATCTAACCTAAGTCGAGATCAGATGACTGAGACGATGCTACGAGTCTAAAAATGACCAAAACCAA
GTCAAGGTCATAGATAAATGACTAAACCGATATCATGAGTCTAAAGATGATCTGACCTAAGTTAA
GATCAAATGATTAGGACGATGTCACGAGTCTAAAAGTAACCAAGATCGAGTCAAGGTCACAAATA
AATGACCAAACTAATAC
Found at i:22996257 original size:114 final size:114
Alignment explanation
Indices: 22995190--22996257 Score: 610
Period size: 114 Copynumber: 9.4 Consensus size: 114
22995180 GTGACTAGGA
* * ** * ** *
22995190 TGATGCCACGAGTCTGAA-ATTGATCTGACCTAAACCGAGATCAGATGATTAGGACAAT-ACTAT
1 TGATGTCATGAGTCTGAAGA-TGATCTGACCTAAGTCGAGATCAGATGATTGGGATGATGTC-AT
* * * * *
22995253 GAG-TCAAAAAGTGACTAAGA-TCGAGTTGAA-ATCATAGATAAATGATCGGAC
64 GAGTTC-AAAAGTGACCAAGACT-GAG-TCAAGGTCATAAATAAATGATCAGAC
* * * * * * ***
22995304 TGATGCTACA--AGTTTGAAGATAATCTGACTTGAGTCGAGATTAGATGATTGGGA-CAACACAG
1 TGATG-T-CATGAGTCTGAAGATGATCTGACCTAAGTCGAGATCAGATGATTGGGATGATGTCA-
* * * ** ** ** * *
22995366 TGAG-TCTAAAGGCGACTAAGACCAAGTTGAGGTCATAGGTAAATGACCAGAT
63 TGAGTTC-AAAAGTGACCAAGACTGAGTCAAGGTCATAAATAAATGATCAGAC
* * * * * * * * * *
22995418 TGATGTCACGAGTCTAAAGATAATTTGACTTAAGTCTAAATCAAATGACTGGGATGATGTCATAA
1 TGATGTCATGAGTCTGAAGATGATCTGACCTAAGTCGAGATCAGATGATTGGGATGATGTCATGA
** * *
22995483 GTTTGAAGGTGACTAAGACTGAGTCAAGGTCATAAATAAATGATC-GAAC
66 GTTCAAAAGTGACCAAGACTGAGTCAAGGTCATAAATAAATGATCAG-AC
* * * * * *
22995532 TAATGCCATGAGTCTGAAAATGATTTGACCTAAGTCGAGATCAGATGATTGGGACGATG-CTACG
1 TGATGTCATGAGTCTGAAGATGATCTGACCTAAGTCGAGATCAGATGATTGGGATGATGTC-ATG
* * * ** ** ** **
22995596 AG-TCTAAAAATTACCAAAACCAAGTTGAGGTTGTAGCTAAATGA-CTAGAC
65 AGTTC-AAAAGTGACCAAGACTGAGTCAAGGTCATAAATAAATGATC-AGAC
* * * * * * *
22995646 CGATGTCATGAGTTTGAAGATGATCTGACCTGAGTTGAGATTAGATGATTGGGACGATGTCGTGA
1 TGATGTCATGAGTCTGAAGATGATCTGACCTAAGTCGAGATCAGATGATTGGGATGATGTCATGA
* * * * * *
22995711 G-TCTGAAGGTAACGAAGA-TCGAGTCAAGGTCGTAAATAAATGACCAGAC
66 GTTC-AAAAGTGACCAAGACT-GAGTCAAGGTCATAAATAAATGATCAGAC
* * * * * * * ** * * *
22995760 TAAT-ACTACGAGTCTGAAGATGATTTGACCTGAGTCAAGATCAGATGACTAAGATAATGTCGTA
1 TGATGTC-ATGAGTCTGAAGATGATCTGACCTAAGTCGAGATCAGATGATTGGGATGATGTCATG
** * *
22995824 AG-TCTGAAG-GCAACTAAGA-TCGAGTTAAGGTCATAAATAAATGATCAGAC
65 AGTTCAAAAGTG--ACCAAGACT-GAGTCAAGGTCATAAATAAATGATCAGAC
* * * * * *
22995874 TAATG-CTATGAGTCTGAAGATGATCTAACCTAAGTCGATATTAGATGACTGAGATGATGTCATG
1 TGATGTC-ATGAGTCTGAAGATGATCTGACCTAAGTCGAGATCAGATGATTGGGATGATGTCATG
* * ** * * *
22995938 AGTTTAAAAATGATTAAGAGTGAGTCAAGGTCATAGATAAATGATCAAAC
65 AGTTCAAAAGTGACCAAGACTGAGTCAAGGTCATAAATAAATGATCAGAC
* ** * ** * * *
22995988 TGATATTGTGAGTCTAAAGATGATCTGACCTAAGTTAAGATCAAATGATTAGGATGATGTCACGA
1 TGATGTCATGAGTCTGAAGATGATCTGACCTAAGTCGAGATCAGATGATTGGGATGATGTCATGA
* * *
22996053 GTTCAAAAGTGACCAAGACTGAGTCAATGTCACAAATAAATGATCAAAC
66 GTTCAAAAGTGACCAAGACTGAGTCAAGGTCATAAATAAATGATCAGAC
** * * * * ** *
22996102 TGATACCGTGAGTTTGAAAATGATTTGACCTAAGTTAAGATCAGATGATTGGGATGATGTCACGA
1 TGATGTCATGAGTCTGAAGATGATCTGACCTAAGTCGAGATCAGATGATTGGGATGATGTCATGA
* * *
22996167 GTTCAAAAGTGACCAAGATTGAGTCGAGGTCATAGATAAATGATCAGAC
66 GTTCAAAAGTGACCAAGACTGAGTCAAGGTCATAAATAAATGATCAGAC
* * * *
22996216 TGATGTCATAAATCTGAAGATGATCTAACCTGAGTCGAGATC
1 TGATGTCATGAGTCTGAAGATGATCTGACCTAAGTCGAGATC
22996258 GAAACCTATG
Statistics
Matches: 735, Mismatches: 192, Indels: 54
0.75 0.20 0.06
Matches are distributed among these distances:
112 2 0.00
113 12 0.02
114 706 0.96
115 12 0.02
116 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.26
Consensus pattern (114 bp):
TGATGTCATGAGTCTGAAGATGATCTGACCTAAGTCGAGATCAGATGATTGGGATGATGTCATGA
GTTCAAAAGTGACCAAGACTGAGTCAAGGTCATAAATAAATGATCAGAC
Found at i:22996949 original size:20 final size:20
Alignment explanation
Indices: 22996924--22996961 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
22996914 AACTGGAACC
22996924 TTTTTTTTATTATTTTTGGT
1 TTTTTTTTATTATTTTTGGT
* *
22996944 TTTTTTTTGTTTTTTTTG
1 TTTTTTTTATTATTTTTG
22996962 TTTCAAGTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.05, C:0.00, G:0.11, T:0.84
Consensus pattern (20 bp):
TTTTTTTTATTATTTTTGGT
Found at i:22997459 original size:34 final size:34
Alignment explanation
Indices: 22997412--22997478 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
22997402 ACAGTATCGC
22997412 TTCCATTCCATAGACCAAGGAAAAAAGAGTTGTT
1 TTCCATTCCATAGACCAAGGAAAAAAGAGTTGTT
*
22997446 TTCCATTCTATAGACCAAGGAAAAAAGAGTTGT
1 TTCCATTCCATAGACCAAGGAAAAAAGAGTTGT
22997479 CTTGGTAGAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (34 bp):
TTCCATTCCATAGACCAAGGAAAAAAGAGTTGTT
Found at i:23003918 original size:14 final size:15
Alignment explanation
Indices: 23003899--23003929 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
23003889 GTAAGATATC
23003899 TTCCTCTA-TTACCT
1 TTCCTCTATTTACCT
23003913 TTCCTCTATTTACCT
1 TTCCTCTATTTACCT
23003928 TT
1 TT
23003930 TTTAAGGCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.13, C:0.32, G:0.00, T:0.55
Consensus pattern (15 bp):
TTCCTCTATTTACCT
Found at i:23007620 original size:19 final size:18
Alignment explanation
Indices: 23007571--23007621 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 18
23007561 TAAAATTTCT
*
23007571 CAAAAAATAAAAA-AGAT
1 CAAAAAATAAAAATAGAA
*
23007588 CAAAAAATAGAAATGAGAA
1 CAAAAAATAAAAAT-AGAA
*
23007607 CAAAAACTAAAAATA
1 CAAAAAATAAAAATA
23007622 AAATGAGTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
17 12 0.43
18 1 0.04
19 15 0.54
ACGTcount: A:0.73, C:0.08, G:0.08, T:0.12
Consensus pattern (18 bp):
CAAAAAATAAAAATAGAA
Found at i:23007653 original size:15 final size:14
Alignment explanation
Indices: 23007633--23007662 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
23007623 AATGAGTTAT
23007633 AAAATGAAAATCAAA
1 AAAATGAAAAT-AAA
23007648 AAAATGAAAATAAA
1 AAAATGAAAATAAA
23007662 A
1 A
23007663 TAGAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.77, C:0.03, G:0.07, T:0.13
Consensus pattern (14 bp):
AAAATGAAAATAAA
Found at i:23007669 original size:20 final size:21
Alignment explanation
Indices: 23007633--23007672 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
23007623 AATGAGTTAT
23007633 AAAATGAAAATCAAAAAAATG
1 AAAATGAAAATCAAAAAAATG
*
23007654 AAAAT-AAAATAGAAAAAAA
1 AAAATGAAAAT-CAAAAAAA
23007673 GACTTGTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.78, C:0.03, G:0.07, T:0.12
Consensus pattern (21 bp):
AAAATGAAAATCAAAAAAATG
Found at i:23008514 original size:3 final size:3
Alignment explanation
Indices: 23008462--23008499 Score: 58
Period size: 3 Copynumber: 12.3 Consensus size: 3
23008452 AACATACACT
*
23008462 ATA ATA TATA ATG ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
23008500 CTATAGTATA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:23008525 original size:21 final size:20
Alignment explanation
Indices: 23008428--23008530 Score: 81
Period size: 21 Copynumber: 5.2 Consensus size: 20
23008418 GAATAAAATA
*
23008428 ATAATAATAATAACTATAGT
1 ATAATAATAATAACTATAAT
* *
23008448 GT-ATAA-CATACACTATAAT
1 ATAATAATAATA-ACTATAAT
*
23008467 AT-ATAATGATAA-TAATAAT
1 ATAATAATAATAACT-ATAAT
*
23008486 AATAATAATAATAACTATAGT
1 -ATAATAATAATAACTATAAT
23008507 ATAATAATGACAT-ACTATAAT
1 ATAATAAT-A-ATAACTATAAT
23008528 ATA
1 ATA
23008531 CAAAAATAAT
Statistics
Matches: 67, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
18 4 0.06
19 22 0.33
20 14 0.21
21 24 0.36
22 3 0.04
ACGTcount: A:0.54, C:0.07, G:0.05, T:0.34
Consensus pattern (20 bp):
ATAATAATAATAACTATAAT
Found at i:23008527 original size:16 final size:17
Alignment explanation
Indices: 23008490--23008528 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
23008480 AATAATAATA
*
23008490 ATAATAATAACTATAGT
1 ATAATAATAACTATACT
*
23008507 ATAATAATGAC-ATACT
1 ATAATAATAACTATACT
23008523 ATAATA
1 ATAATA
23008529 TACAAAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.54, C:0.08, G:0.05, T:0.33
Consensus pattern (17 bp):
ATAATAATAACTATACT
Found at i:23010626 original size:15 final size:15
Alignment explanation
Indices: 23010603--23010645 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
23010593 ATCTTGAATC
* *
23010603 TCTTTTTCTTTTTCT
1 TCTTATTCTTTTTAT
23010618 TC-TACTTCTTTTTAT
1 TCTTA-TTCTTTTTAT
23010633 TCTTATTCTTTTT
1 TCTTATTCTTTTT
23010646 TAGGATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
14 1 0.04
15 21 0.88
16 2 0.08
ACGTcount: A:0.07, C:0.19, G:0.00, T:0.74
Consensus pattern (15 bp):
TCTTATTCTTTTTAT
Found at i:23015249 original size:40 final size:42
Alignment explanation
Indices: 23015239--23015369 Score: 115
Period size: 41 Copynumber: 3.1 Consensus size: 42
23015229 TTCAAATCCT
23015239 AATTTAAAACC-CTAAACTCCAAACCCTAAATCAAAACCCTA
1 AATTTAAAACCTCTAAACTCCAAACCCTAAATCAAAACCCTA
* ** * * *
23015280 AATTTAAAACCTTAATCCAAACTTTAAACCCTAAAACCCAAACCCCA
1 AATTTAAAACC----TCTAAACTCCAAACCCT-AAATCAAAACCCTA
** *
23015327 AA-TCCAAACC-CTAAACTCCAAACCCTAAATCAAAACCATA
1 AATTTAAAACCTCTAAACTCCAAACCCTAAATCAAAACCCTA
23015367 AAT
1 AAT
23015370 CTCAAACCCC
Statistics
Matches: 68, Mismatches: 15, Indels: 14
0.70 0.15 0.14
Matches are distributed among these distances:
40 12 0.18
41 24 0.35
46 19 0.28
47 13 0.19
ACGTcount: A:0.49, C:0.32, G:0.00, T:0.19
Consensus pattern (42 bp):
AATTTAAAACCTCTAAACTCCAAACCCTAAATCAAAACCCTA
Found at i:23015252 original size:13 final size:13
Alignment explanation
Indices: 23015227--23015300 Score: 51
Period size: 13 Copynumber: 5.6 Consensus size: 13
23015217 CTAAACGCTA
*
23015227 AATTC-AAATCCT
1 AATTCAAAACCCT
*
23015239 AATTTAAAACCCT
1 AATTCAAAACCCT
* *
23015252 AAACTCCAAACCCT
1 -AATTCAAAACCCT
*
23015266 AAATCAAAACCCT
1 AATTCAAAACCCT
* *
23015279 AAATTTAAAACCTT
1 -AATTCAAAACCCT
*
23015293 AATCCAAA
1 AATTCAAA
23015301 CTTTAAACCC
Statistics
Matches: 47, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
12 4 0.09
13 23 0.49
14 20 0.43
ACGTcount: A:0.49, C:0.27, G:0.00, T:0.24
Consensus pattern (13 bp):
AATTCAAAACCCT
Found at i:23015267 original size:27 final size:27
Alignment explanation
Indices: 23015244--23015390 Score: 111
Period size: 27 Copynumber: 5.2 Consensus size: 27
23015234 ATCCTAATTT
23015244 AAAACCCTAAACTCCAAACCCTAAATC
1 AAAACCCTAAACTCCAAACCCTAAATC
** * *
23015271 AAAACCCTAAA-TTTAAAACCTTAATCC
1 AAAACCCTAAACTCCAAACCCTAAAT-C
*
23015298 AAACTTTAAACCCTAAAAC-CCAAACCCCAAATC
1 --A----AAACCCT-AAACTCCAAACCCTAAATC
*
23015331 CAAACCCTAAACTCCAAACCCTAAATC
1 AAAACCCTAAACTCCAAACCCTAAATC
* *
23015358 AAAACCATAAA-TCTCAAACCCCAAATCC
1 AAAACCCTAAACTC-CAAACCCTAAAT-C
23015386 AAAAC
1 AAAAC
23015391 ATAAACCTAA
Statistics
Matches: 94, Mismatches: 14, Indels: 23
0.72 0.11 0.18
Matches are distributed among these distances:
26 16 0.17
27 52 0.55
28 6 0.06
29 1 0.01
33 8 0.09
34 11 0.12
ACGTcount: A:0.49, C:0.35, G:0.00, T:0.16
Consensus pattern (27 bp):
AAAACCCTAAACTCCAAACCCTAAATC
Found at i:23015314 original size:7 final size:7
Alignment explanation
Indices: 23015304--23015428 Score: 50
Period size: 7 Copynumber: 18.6 Consensus size: 7
23015294 ATCCAAACTT
23015304 TAAACCC
1 TAAACCC
23015311 TAAAACCC
1 T-AAACCC
23015319 -AAACCC
1 TAAACCC
* *
23015325 CAAATCC
1 TAAACCC
23015332 -AAACCC
1 TAAACCC
23015338 TAAACTCC
1 TAAAC-CC
23015346 -AAACCC
1 TAAACCC
*
23015352 TAAA-TC
1 TAAACCC
* *
23015358 AAAACCA
1 TAAACCC
*
23015365 TAAA-TC
1 TAAACCC
23015371 TCAAACCC
1 T-AAACCC
* *
23015379 CAAATCC
1 TAAACCC
* *
23015386 -AAAACA
1 TAAACCC
23015392 TAAA-CC
1 TAAACCC
*
23015398 TAAAACC
1 TAAACCC
23015405 TAAACCC
1 TAAACCC
23015412 T-AACCC
1 TAAACCC
* *
23015418 CAAGCCC
1 TAAACCC
23015425 TAAA
1 TAAA
23015429 TGATTAATGC
Statistics
Matches: 87, Mismatches: 20, Indels: 22
0.67 0.16 0.17
Matches are distributed among these distances:
6 32 0.37
7 46 0.53
8 9 0.10
ACGTcount: A:0.49, C:0.38, G:0.01, T:0.13
Consensus pattern (7 bp):
TAAACCC
Found at i:23015377 original size:87 final size:87
Alignment explanation
Indices: 23015245--23015411 Score: 239
Period size: 87 Copynumber: 1.9 Consensus size: 87
23015235 TCCTAATTTA
* * ** *
23015245 AAACCCTAAACTCCAAACCCTAAATCAAAACCCTAAATTTAAAA-CCTTAATCC-AAACTTTAAA
1 AAACCCTAAACTCCAAACCCTAAATCAAAACCATAAATCTAAAACCCCAAATCCAAAAC-ATAAA
23015308 CCCTAAAACCCAAACCCCAAATCC
65 -CCTAAAACCCAAACCCCAAATCC
*
23015332 AAACCCTAAACTCCAAACCCTAAATCAAAACCATAAATCTCAAACCCCAAATCCAAAACATAAAC
1 AAACCCTAAACTCCAAACCCTAAATCAAAACCATAAATCTAAAACCCCAAATCCAAAACATAAAC
*
23015397 CTAAAACCTAAACCC
66 CTAAAACCCAAACCC
23015412 TAACCCCAAG
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
87 56 0.79
88 11 0.15
89 4 0.06
ACGTcount: A:0.49, C:0.35, G:0.00, T:0.16
Consensus pattern (87 bp):
AAACCCTAAACTCCAAACCCTAAATCAAAACCATAAATCTAAAACCCCAAATCCAAAACATAAAC
CTAAAACCCAAACCCCAAATCC
Found at i:23015390 original size:14 final size:13
Alignment explanation
Indices: 23015245--23015388 Score: 111
Period size: 13 Copynumber: 11.2 Consensus size: 13
23015235 TCCTAATTTA
23015245 AAACCCTAAACTCC
1 AAACCCTAAA-TCC
*
23015259 AAACCCTAAATCA
1 AAACCCTAAATCC
**
23015272 AAACCCTAAATTT
1 AAACCCTAAATCC
* *
23015285 AAAACCTTAATCC
1 AAACCCTAAATCC
*
23015298 AAA--CT---T-T
1 AAACCCTAAATCC
*
23015305 AAACCCTAAAACCC
1 AAACCCT-AAATCC
*
23015319 AAACCCCAAATCC
1 AAACCCTAAATCC
23015332 AAACCCTAAACTCC
1 AAACCCTAAA-TCC
*
23015346 AAACCCTAAATCA
1 AAACCCTAAATCC
*
23015359 AAACCATAAATCTC
1 AAACCCTAAATC-C
*
23015373 AAACCCCAAATCC
1 AAACCCTAAATCC
23015386 AAA
1 AAA
23015389 ACATAAACCT
Statistics
Matches: 103, Mismatches: 18, Indels: 19
0.74 0.13 0.14
Matches are distributed among these distances:
7 3 0.03
8 1 0.01
9 2 0.02
11 2 0.02
13 56 0.54
14 39 0.38
ACGTcount: A:0.49, C:0.35, G:0.00, T:0.17
Consensus pattern (13 bp):
AAACCCTAAATCC
Found at i:23016572 original size:25 final size:25
Alignment explanation
Indices: 23016521--23016725 Score: 186
Period size: 25 Copynumber: 8.2 Consensus size: 25
23016511 GTGTGTTTTA
* *
23016521 CATTTCATTCATATTTGTAATTATGT
1 CATTTCATGCATATTT-AAATTATGT
23016547 CATTTCATGCATATTGTAAATT-TGT
1 CATTTCATGCATATT-TAAATTATGT
* * *
23016572 CATTCCATGCATATTTTAATTATAT
1 CATTTCATGCATATTTAAATTATGT
* *
23016597 CATTTCATACAGATTTATAATTATGT
1 CATTTCATGCATATTTA-AATTATGT
* *
23016623 CATTTCATGGA-ATTCTAAA-AATGT
1 CATTTCATGCATATT-TAAATTATGT
* *
23016647 CATTTCATGGA-ATTCTAAA-AATGT
1 CATTTCATGCATATT-TAAATTATGT
* *
23016671 CATTTCATGCATATTTTAATTATAT
1 CATTTCATGCATATTTAAATTATGT
* * *
23016696 TATCTCATGCATATTTTAATTATGT
1 CATTTCATGCATATTTAAATTATGT
23016721 CATTT
1 CATTT
23016726 ATTATATATT
Statistics
Matches: 151, Mismatches: 22, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
24 46 0.30
25 68 0.45
26 36 0.24
27 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.08, T:0.47
Consensus pattern (25 bp):
CATTTCATGCATATTTAAATTATGT
Found at i:23016651 original size:24 final size:24
Alignment explanation
Indices: 23016619--23016679 Score: 122
Period size: 24 Copynumber: 2.5 Consensus size: 24
23016609 ATTTATAATT
23016619 ATGTCATTTCATGGAATTCTAAAA
1 ATGTCATTTCATGGAATTCTAAAA
23016643 ATGTCATTTCATGGAATTCTAAAA
1 ATGTCATTTCATGGAATTCTAAAA
23016667 ATGTCATTTCATG
1 ATGTCATTTCATG
23016680 CATATTTTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.39
Consensus pattern (24 bp):
ATGTCATTTCATGGAATTCTAAAA
Found at i:23017273 original size:10 final size:9
Alignment explanation
Indices: 23017245--23017274 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
23017235 GGAAATCATT
23017245 AAAAATGAA
1 AAAAATGAA
23017254 AAAAATGAA
1 AAAAATGAA
23017263 AAAAATGGAA
1 AAAAAT-GAA
23017273 AA
1 AA
23017275 CCAAAAAGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 15 0.75
10 5 0.25
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (9 bp):
AAAAATGAA
Found at i:23022899 original size:16 final size:16
Alignment explanation
Indices: 23022878--23022911 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
23022868 TAAATTAAGC
23022878 TATTAAATAATAATTT
1 TATTAAATAATAATTT
*
23022894 TATTAATTAATAATTT
1 TATTAAATAATAATTT
23022910 TA
1 TA
23022912 AAAAACAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TATTAAATAATAATTT
Found at i:23022941 original size:17 final size:17
Alignment explanation
Indices: 23022912--23022964 Score: 58
Period size: 16 Copynumber: 3.3 Consensus size: 17
23022902 AATAATTTTA
*
23022912 AAAAAC-AATAAAAAGG
1 AAAAACAAAAAAAAAGG
23022928 AAAAACAAAAAAAAAGG
1 AAAAACAAAAAAAAAGG
* *
23022945 AAGAA-AAAAGAAAA-G
1 AAAAACAAAAAAAAAGG
23022960 AAAAA
1 AAAAA
23022965 TTATTGAGGT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
15 5 0.16
16 14 0.44
17 13 0.41
ACGTcount: A:0.81, C:0.04, G:0.13, T:0.02
Consensus pattern (17 bp):
AAAAACAAAAAAAAAGG
Found at i:23023817 original size:19 final size:19
Alignment explanation
Indices: 23023786--23023822 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
23023776 TACATCTTAA
23023786 TTATATAAATAAAATATTT
1 TTATATAAATAAAATATTT
23023805 TTAT-TAAATTAAAATATT
1 TTATATAAA-TAAAATATT
23023823 AAATGATAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
TTATATAAATAAAATATTT
Found at i:23023846 original size:29 final size:26
Alignment explanation
Indices: 23023804--23023857 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 26
23023794 ATAAAATATT
23023804 TTTATTAAATTAAAATATTAAATGATAAC
1 TTTATTAAATT-AAATA-TAAAT-ATAAC
23023833 TTTATT-AATATAAATATAAATATAA
1 TTTATTAAAT-TAAATATAAATATAA
23023858 AATAAATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
26 4 0.17
27 5 0.21
28 8 0.33
29 7 0.29
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (26 bp):
TTTATTAAATTAAATATAAATATAAC
Found at i:23025876 original size:13 final size:13
Alignment explanation
Indices: 23025858--23025887 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
23025848 AATTAAGATT
23025858 CAAATAGTAAAGA
1 CAAATAGTAAAGA
23025871 CAAATAGTAAAGA
1 CAAATAGTAAAGA
23025884 -AAAT
1 CAAAT
23025888 CAATATAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.24
13 13 0.76
ACGTcount: A:0.63, C:0.07, G:0.13, T:0.17
Consensus pattern (13 bp):
CAAATAGTAAAGA
Found at i:23027002 original size:2 final size:2
Alignment explanation
Indices: 23026995--23027081 Score: 77
Period size: 2 Copynumber: 44.0 Consensus size: 2
23026985 GCAAACAAGC
* *
23026995 AT AT AT AT GT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * ** * * * *
23027036 AT GT AT GT GC GT TT AT AT AT AT GT AT AT AT GT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23027078 AT AT
1 AT AT
23027082 GTACACCTTA
Statistics
Matches: 71, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
1 1 0.01
2 70 0.99
ACGTcount: A:0.39, C:0.01, G:0.09, T:0.51
Consensus pattern (2 bp):
AT
Found at i:23031441 original size:144 final size:144
Alignment explanation
Indices: 23031221--23031526 Score: 343
Period size: 144 Copynumber: 2.1 Consensus size: 144
23031211 AATGGCAAAT
* *
23031221 TTACCAAAATGCCCTTTAAGGAGTATTTTCGTAATTTAACTTTCTCAAGCTTGAATTTTCATGAA
1 TTACCAAAATACCCTTTAAGGAGTATTTTCGTAATTTAACTTTCTCAAGCTAGAATTTTCATGAA
* * * * ** * * **
23031286 AATTTTTAGATTTTAATTTCGTAATATTTTGTG-TTTTTTGGTGCATTTGAAATCATAAGCCATG
66 AATTTTCAGATTCTAATGTCATAATATTTCATGATTTTTT-ATGCATTTGAAATCAT-AGCAAAA
* *
23031350 CCCTAAAAGTATAAAA
129 CCCCAAAAATATAAAA
* * * *
23031366 TTATCAAAATACCCTTTAAGG-GTTTTTTTGTAATTTGACCTTTC-CAAGCTCAG-ATATTT-AT
1 TTACCAAAATACCCTTTAAGGAGTATTTTCGTAATTT-AACTTTCTCAAGCT-AGAAT-TTTCAT
* *
23031427 GAAACTTTTCAGATTCTAATGTCATTATATTTCATGATTTTTTATGCATTTGAAATCATAGCAAA
63 GAAAATTTTCAGATTCTAATGTCATAATATTTCATGATTTTTTATGCATTTGAAATCATAGCAAA
*
23031492 ACCCCAAAAATGTAAAA
128 ACCCCAAAAATATAAAA
23031509 TTACCAAAATACCCTTTA
1 TTACCAAAATACCCTTTA
23031527 TGCCTCTTTA
Statistics
Matches: 135, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
143 34 0.25
144 66 0.49
145 35 0.26
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.41
Consensus pattern (144 bp):
TTACCAAAATACCCTTTAAGGAGTATTTTCGTAATTTAACTTTCTCAAGCTAGAATTTTCATGAA
AATTTTCAGATTCTAATGTCATAATATTTCATGATTTTTTATGCATTTGAAATCATAGCAAAACC
CCAAAAATATAAAA
Found at i:23034120 original size:12 final size:12
Alignment explanation
Indices: 23034094--23034135 Score: 52
Period size: 11 Copynumber: 3.6 Consensus size: 12
23034084 AACGATTTGG
*
23034094 TTTAATTAT-TA
1 TTTATTTATGTA
23034105 TTTATTTATGTA
1 TTTATTTATGTA
23034117 TTTA-TTATGTTA
1 TTTATTTATG-TA
23034129 TTTATTT
1 TTTATTT
23034136 TTCCAAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
11 13 0.48
12 12 0.44
13 2 0.07
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (12 bp):
TTTATTTATGTA
Found at i:23034524 original size:22 final size:23
Alignment explanation
Indices: 23034499--23034541 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
23034489 ATTTTTAAGA
23034499 ATTTTTTTTCAAAAT-TTTTGGC
1 ATTTTTTTTCAAAATGTTTTGGC
*
23034521 ATTTTTTTTTAAAATGTTTTG
1 ATTTTTTTTCAAAATGTTTTG
23034542 AAAAAATTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.23, C:0.05, G:0.09, T:0.63
Consensus pattern (23 bp):
ATTTTTTTTCAAAATGTTTTGGC
Found at i:23034980 original size:5 final size:5
Alignment explanation
Indices: 23034966--23035004 Score: 53
Period size: 5 Copynumber: 7.6 Consensus size: 5
23034956 TGTTTCATTT
23034966 TTTTA TTTTTA TTTTA TTTTA TTTTA TTGTT- TTTTA TTT
1 TTTTA -TTTTA TTTTA TTTTA TTTTA TT-TTA TTTTA TTT
23035005 ATGTGTTTGG
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
4 2 0.06
5 22 0.71
6 7 0.23
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:23035576 original size:50 final size:46
Alignment explanation
Indices: 23035456--23035569 Score: 122
Period size: 50 Copynumber: 2.4 Consensus size: 46
23035446 TTTCTTTTCG
* *
23035456 AAAA-CAAAAAAAAATTCTAAATAGGCCCAAATGGTGAAAATTTTA
1 AAAATCAAAAAAAAATTCTAAATAGACCCAAATGGTGAAAAATTTA
* *
23035501 AAAATTAAAAAAAATATATTTCTAAATTGACCCAAATGGTGAAAAATTTA
1 AAAA-TCAAAAAAA-A-A-TTCTAAATAGACCCAAATGGTGAAAAATTTA
*
23035551 GAAATCCAACAAAAAAATT
1 AAAAT-CAA-AAAAAAATT
23035570 AACTAAAGAA
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
45 4 0.07
47 7 0.12
48 3 0.05
49 3 0.05
50 34 0.61
51 5 0.09
ACGTcount: A:0.56, C:0.11, G:0.09, T:0.25
Consensus pattern (46 bp):
AAAATCAAAAAAAAATTCTAAATAGACCCAAATGGTGAAAAATTTA
Found at i:23037048 original size:89 final size:89
Alignment explanation
Indices: 23036897--23037066 Score: 313
Period size: 89 Copynumber: 1.9 Consensus size: 89
23036887 ACATAGCTTC
* *
23036897 ACTACTTTAAGTAGATATTGACAATAATCTGATTAAAGCCATCATTCAGTTTTGGGATCCTTCTT
1 ACTACTTCAAGTAGATATTGACAATAATCTGATTAAAGCCATCATTCAGTTTTAGGATCCTTCTT
23036962 ATAAGTGTTTCATCTTTAATGAAG
66 ATAAGTGTTTCATCTTTAATGAAG
*
23036986 ACTACTTCAAGTAGATGTTGACAATAATCTGATTAAAGCCATCATTCAGTTTTAGGATCCTTCTT
1 ACTACTTCAAGTAGATATTGACAATAATCTGATTAAAGCCATCATTCAGTTTTAGGATCCTTCTT
23037051 ATAAGTGTTTCATCTT
66 ATAAGTGTTTCATCTT
23037067 CAATAAAGCA
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
89 78 1.00
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (89 bp):
ACTACTTCAAGTAGATATTGACAATAATCTGATTAAAGCCATCATTCAGTTTTAGGATCCTTCTT
ATAAGTGTTTCATCTTTAATGAAG
Found at i:23047289 original size:45 final size:45
Alignment explanation
Indices: 23047077--23047517 Score: 361
Period size: 44 Copynumber: 9.9 Consensus size: 45
23047067 TAGATGAACT
* *
23047077 TTATTTA--TTTTTCAAAGTTATTGTGCCTCTGTTTAGAGGAGCC
1 TTATTTATTTTTTTCAAAGTCATTGAGCCTCTGTTTAGAGGAGCC
*
23047120 TTA--T-TTTTTTT-AAAGTCATTGAGCCTTTGTTTAGAGGAGCC
1 TTATTTATTTTTTTCAAAGTCATTGAGCCTCTGTTTAGAGGAGCC
* ** * * **
23047161 TTGTTTATTTATTTTTCAAAGTTGTTGTGCCTCTATTTAGAAAAGCC
1 TTATTTA-TT-TTTTTCAAAGTCATTGAGCCTCTGTTTAGAGGAGCC
* *
23047208 TTATTTA--TTTTCCAAAAGTTATTGAGCCTCTGTTTAGAGGAGCC
1 TTATTTATTTTTTTC-AAAGTCATTGAGCCTCTGTTTAGAGGAGCC
* * * *
23047252 TTGTTTATTTTTTTAAAAGTCATTGAGCCTCTATTTAGAAGAG-C
1 TTATTTATTTTTTTCAAAGTCATTGAGCCTCTGTTTAGAGGAGCC
* * * * * * * **
23047296 TCTATGTATTTTTTTTCAAAGCCGTTGAGCCTTTATTTAAAAGAATC
1 T-TATTTA-TTTTTTTCAAAGTCATTGAGCCTCTGTTTAGAGGAGCC
* * * * *
23047343 TTATTTATTTTTTTCAAAGTCGTTAAGCTTCTGTTTAAAGAAGCC
1 TTATTTATTTTTTTCAAAGTCATTGAGCCTCTGTTTAGAGGAGCC
* * * **
23047388 CTATTTA--TTTTTCAAAAGCCATTGAGCCTCTATTTAGAGGAGTT
1 TTATTTATTTTTTTC-AAAGTCATTGAGCCTCTGTTTAGAGGAGCC
* * *
23047432 TTATTTA--TTTTTCAAAAATCGTTGAGCCTTTGTTTAGAGGAGCC
1 TTATTTATTTTTTTC-AAAGTCATTGAGCCTCTGTTTAGAGGAGCC
*
23047476 TTATTTATTTTTTTCAAAGTCGA-TGAGCCTTTGTTTAGAGGA
1 TTATTTATTTTTTTCAAAGTC-ATTGAGCCTCTGTTTAGAGGA
23047518 ATTTTGTTTA
Statistics
Matches: 318, Mismatches: 62, Indels: 34
0.77 0.15 0.08
Matches are distributed among these distances:
41 30 0.09
42 5 0.02
43 15 0.05
44 97 0.31
45 90 0.28
46 50 0.16
47 31 0.10
ACGTcount: A:0.25, C:0.13, G:0.17, T:0.45
Consensus pattern (45 bp):
TTATTTATTTTTTTCAAAGTCATTGAGCCTCTGTTTAGAGGAGCC
Found at i:23047354 original size:89 final size:87
Alignment explanation
Indices: 23047066--23047556 Score: 300
Period size: 89 Copynumber: 5.5 Consensus size: 87
23047056 GTGCCTCTAC
* * * ** * *
23047066 TTAGATGAACTTTATTTATTTTTCAAAGTTATTGTGCCTCTGTTTAGAGGAGCC--TTATTTTTT
1 TTAGAGGAATTTTATTTATTTTTAAAAGTCGTTGAGCCTCTGTTTAGAAGAGCCTATTATTTTTT
* * *
23047129 TT-AAAGTCATTGAGCCTTTGT
66 TTCAAAGCCGTTGAGCCTTTAT
* * * * * *
23047150 TTAGAGGAGCCTTGTTTATTTATTTTTCAAAGTTGTTGTGCCTCTATTTAGAAAAGCC--TTATT
1 TTAGAGGA---AT-TTTATTTATTTTTAAAAGTCGTTGAGCCTCTGTTTAGAAGAGCCTATTATT
* *** * *
23047213 TATTTTCCAAAAGTTATTGAGCCTCTGT
62 T-TTTTTC-AAAGCCGTTGAGCCTTTAT
*** * * *
23047241 TTAGAGGAGCCTTGTTTATTTTTTTAAAAGTCATTGAGCCTCTATTTAGAAGAGCTCTATGTATT
1 TTAGAGGAATTTTATTTA--TTTTTAAAAGTCGTTGAGCCTCTGTTTAGAAGAGC-CTAT-TATT
23047306 TTTTTTCAAAGCCGTTGAGCCTTTAT
62 TTTTTTCAAAGCCGTTGAGCCTTTAT
* * * * * *
23047332 TTAAAAGAATCTTATTTATTTTTTTCAAAGTCGTTAAGCTTCTGTTTA-AAGAAGCCCTA-T-TT
1 TTAGAGGAATTTTATTTA--TTTTTAAAAGTCGTTGAGCCTCTGTTTAGAAG-AG-CCTATTATT
* * *
23047394 ATTTTTCAAAAGCCATTGAGCCTCTAT
62 TTTTTTC-AAAGCCGTTGAGCCTTTAT
* * * *
23047421 TTAGAGGAGTTTTATTTATTTTTCAAAAATCGTTGAGCCTTTGTTTAGAGGAGCCTTATT-TATT
1 TTAGAGGAATTTTATTTATTTTT-AAAAGTCGTTGAGCCTCTGTTTAGAAGAGCC-TATTAT-TT
* * *
23047485 TTTTTCAAAGTCGATGAGCCTTTGT
63 TTTTTCAAAGCCGTTGAGCCTTTAT
* * * * *
23047510 TTAGAGGAATTTTGTTTATTCTTCAAAAGTTG-TAAACCTCTGTTTAG
1 TTAGAGGAATTTTATTTATT-TTTAAAAGTCGTTGAGCCTCTGTTTAG
23047557 GGGAGTTTCA
Statistics
Matches: 323, Mismatches: 62, Indels: 40
0.76 0.15 0.09
Matches are distributed among these distances:
84 7 0.02
87 13 0.04
88 88 0.27
89 108 0.33
90 13 0.04
91 82 0.25
92 7 0.02
93 5 0.02
ACGTcount: A:0.25, C:0.13, G:0.16, T:0.45
Consensus pattern (87 bp):
TTAGAGGAATTTTATTTATTTTTAAAAGTCGTTGAGCCTCTGTTTAGAAGAGCCTATTATTTTTT
TTCAAAGCCGTTGAGCCTTTAT
Found at i:23047528 original size:45 final size:45
Alignment explanation
Indices: 23047120--23047529 Score: 200
Period size: 45 Copynumber: 9.1 Consensus size: 45
23047110 TAGAGGAGCC
* ** *
23047120 TTATTTTTTTTAAAGTC-ATTGAGCCTTTGTTTAGAGGAGCCTTGT
1 TTATTTTTTTCAAAGTCGA-TGAGCCTTTGTTTAGAGGAATCTTAT
* * * * * * *
23047165 TTATTTATTTTTCAAAGTTGTTGTGCCTCTATTTAGA-AAAGCCTTAT
1 TTA-TT-TTTTTCAAAGTCGATGAGCCTTTGTTTAGAGGAA-TCTTAT
* * * ** *
23047212 TTA--TTTTCCAAAAGT-TATTGAGCCTCTGTTTAGAGGAGCCTTGT
1 TTATTTTTTTC-AAAGTCGA-TGAGCCTTTGTTTAGAGGAATCTTAT
* * * * *
23047256 TTATTTTTTTAAAAGTC-ATTGAGCCTCTATTTAGAAG-AGCTCTAT
1 TTATTTTTTTCAAAGTCGA-TGAGCCTTTGTTTAGAGGAATCT-TAT
* * * * * *
23047301 GTATTTTTTTTCAAAGCCGTTGAGCCTTTATTTAAAAGAATCTTAT
1 TTA-TTTTTTTCAAAGTCGATGAGCCTTTGTTTAGAGGAATCTTAT
* * * * *
23047347 TTATTTTTTTCAAAGTCGTTAAG-CTTCTGTTTA-AAGAAGCCCTAT
1 TTATTTTTTTCAAAGTCGATGAGCCTT-TGTTTAGAGGAA-TCTTAT
* * * * *
23047392 TTA--TTTTTCAAAAG-CCATTGAGCCTCTATTTAGAGGAGTTTTAT
1 TTATTTTTTTC-AAAGTCGA-TGAGCCTTTGTTTAGAGGAATCTTAT
* * **
23047436 TTA--TTTTTCAAAAATCGTTGAGCCTTTGTTTAGAGGAGCCTTAT
1 TTATTTTTTTC-AAAGTCGATGAGCCTTTGTTTAGAGGAATCTTAT
* *
23047480 TTATTTTTTTCAAAGTCGATGAGCCTTTGTTTAGAGGAATTTTGT
1 TTATTTTTTTCAAAGTCGATGAGCCTTTGTTTAGAGGAATCTTAT
23047525 TTATT
1 TTATT
23047530 CTTCAAAAGT
Statistics
Matches: 282, Mismatches: 60, Indels: 46
0.73 0.15 0.12
Matches are distributed among these distances:
43 12 0.04
44 90 0.32
45 100 0.35
46 46 0.16
47 34 0.12
ACGTcount: A:0.25, C:0.13, G:0.16, T:0.46
Consensus pattern (45 bp):
TTATTTTTTTCAAAGTCGATGAGCCTTTGTTTAGAGGAATCTTAT
Found at i:23047803 original size:4 final size:4
Alignment explanation
Indices: 23047794--23047832 Score: 53
Period size: 4 Copynumber: 9.8 Consensus size: 4
23047784 GGTTTAATTA
*
23047794 TTAT TTAT TTAT TTA- TTAT GTTAT TTAT TTAT TTTT TTA
1 TTAT TTAT TTAT TTAT TTAT -TTAT TTAT TTAT TTAT TTA
23047833 GATTTTATCT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
3 3 0.10
4 24 0.77
5 4 0.13
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTAT
Found at i:23048918 original size:21 final size:21
Alignment explanation
Indices: 23048894--23048937 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
23048884 ATTTGTTTTC
23048894 AAACAAAAAATATAAAATATA
1 AAACAAAAAATATAAAATATA
*
23048915 AAACCAAAAATATAAAATATA
1 AAACAAAAAATATAAAATATA
23048936 AA
1 AA
23048938 TTTTAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.18
Consensus pattern (21 bp):
AAACAAAAAATATAAAATATA
Found at i:23048938 original size:6 final size:7
Alignment explanation
Indices: 23048900--23048937 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
23048890 TTTCAAACAA
23048900 AAAATAT
1 AAAATAT
23048907 AAAATAT
1 AAAATAT
*
23048914 AAAACCA-
1 AAAA-TAT
23048921 AAAATAT
1 AAAATAT
23048928 AAAATAT
1 AAAATAT
23048935 AAA
1 AAA
23048938 TTTTAAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 1 0.04
7 25 0.93
8 1 0.04
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (7 bp):
AAAATAT
Found at i:23049910 original size:23 final size:21
Alignment explanation
Indices: 23049862--23049932 Score: 73
Period size: 21 Copynumber: 3.6 Consensus size: 21
23049852 ACGTAATCGA
23049862 TTTT-TAAA-TTT-AAATTAT
1 TTTTATAAATTTTAAAATTAT
23049880 TTTTATAAATTTTAAAATTATT
1 TTTTATAAATTTTAAAATTA-T
*
23049902 TTTTAATAAATTTT--AATTAA
1 TTTT-ATAAATTTTAAAATTAT
23049922 TTTTA-AAATTT
1 TTTTATAAATTT
23049933 ATTAAAAAAT
Statistics
Matches: 47, Mismatches: 1, Indels: 10
0.81 0.02 0.17
Matches are distributed among these distances:
18 10 0.21
19 5 0.11
20 7 0.15
21 11 0.23
22 5 0.11
23 9 0.19
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TTTTATAAATTTTAAAATTAT
Found at i:23054503 original size:27 final size:28
Alignment explanation
Indices: 23054444--23054504 Score: 90
Period size: 27 Copynumber: 2.2 Consensus size: 28
23054434 TTCAATGTAG
23054444 TAAT-AGGATAAAATAACTTATCAAAAA
1 TAATAAGGATAAAATAACTTATCAAAAA
* *
23054471 TAATAAGG-TAAAATAATTTATTAAAAA
1 TAATAAGGATAAAATAACTTATCAAAAA
23054498 TAATAAG
1 TAATAAG
23054505 AAAGAGTACC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 28 0.90
28 3 0.10
ACGTcount: A:0.59, C:0.03, G:0.08, T:0.30
Consensus pattern (28 bp):
TAATAAGGATAAAATAACTTATCAAAAA
Found at i:23054668 original size:21 final size:22
Alignment explanation
Indices: 23054633--23054676 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
23054623 GTATTAAGCA
*
23054633 TGTTAGCTGAAGAGCCATAATG
1 TGTTAGCTAAAGAGCCATAATG
*
23054655 TGTTAG-TAAAGAGCCTTAATG
1 TGTTAGCTAAAGAGCCATAATG
23054676 T
1 T
23054677 AATGAAAGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.32, C:0.11, G:0.25, T:0.32
Consensus pattern (22 bp):
TGTTAGCTAAAGAGCCATAATG
Found at i:23054769 original size:55 final size:55
Alignment explanation
Indices: 23054666--23054770 Score: 131
Period size: 55 Copynumber: 1.9 Consensus size: 55
23054656 GTTAGTAAAG
* * * * **
23054666 AGCCTTAATGTAATGAAAGAGTGGTACACAGGATACATTGGGTGTGTTGATGCAA
1 AGCCTTAATGTAATGAAAAAATGGTACAAAGGATACATTAGGCATGTTGATGCAA
*
23054721 AGCCTTAATGTAATGAAAAAATGGTGCATAAGG-TACATTAGGCATGTTGA
1 AGCCTTAATGTAATGAAAAAATGGTACA-AAGGATACATTAGGCATGTTGA
23054771 CATGAAGCCT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
55 39 0.93
56 3 0.07
ACGTcount: A:0.35, C:0.10, G:0.27, T:0.28
Consensus pattern (55 bp):
AGCCTTAATGTAATGAAAAAATGGTACAAAGGATACATTAGGCATGTTGATGCAA
Found at i:23057444 original size:26 final size:23
Alignment explanation
Indices: 23057402--23057449 Score: 60
Period size: 26 Copynumber: 2.0 Consensus size: 23
23057392 GCTCATTTGT
23057402 GAACATTAAACAAACATATTCAC
1 GAACATTAAACAAACATATTCAC
*
23057425 GAACATATATAACTAAACATGTTCA
1 GAACAT-TA-AAC-AAACATATTCA
23057450 TGAATAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 6 0.29
24 2 0.10
25 3 0.14
26 10 0.48
ACGTcount: A:0.50, C:0.19, G:0.06, T:0.25
Consensus pattern (23 bp):
GAACATTAAACAAACATATTCAC
Found at i:23057924 original size:11 final size:11
Alignment explanation
Indices: 23057859--23057926 Score: 50
Period size: 11 Copynumber: 6.1 Consensus size: 11
23057849 TTTGGATTCA
23057859 TTTAT-GTTTG
1 TTTATGGTTTG
*
23057869 TTTAGGGTTTG
1 TTTATGGTTTG
* *
23057880 TTTATTTGAATTTA
1 TTTA--TG-GTTTG
*
23057894 TTT-TGGTTCG
1 TTTATGGTTTG
23057904 TTTATGGTTTG
1 TTTATGGTTTG
*
23057915 TTTATTGTTTG
1 TTTATGGTTTG
23057926 T
1 T
23057927 GAATATGTTC
Statistics
Matches: 44, Mismatches: 9, Indels: 9
0.71 0.15 0.15
Matches are distributed among these distances:
10 9 0.20
11 28 0.64
13 1 0.02
14 6 0.14
ACGTcount: A:0.12, C:0.01, G:0.22, T:0.65
Consensus pattern (11 bp):
TTTATGGTTTG
Found at i:23063862 original size:48 final size:49
Alignment explanation
Indices: 23063772--23063869 Score: 153
Period size: 48 Copynumber: 2.0 Consensus size: 49
23063762 AGTCTTATCA
* *
23063772 ATAAGCAAATGAAAAGTAATCTAATAAATTAATAAAGTATTGAATTTAT
1 ATAAGCAAATGAAAAGTAATCTAATAAATCAATAAAGCATTGAATTTAT
* *
23063821 ATAAGCAAATGAAAAG-AATTTAATATATCAATAAAGCATTGAATTTAT
1 ATAAGCAAATGAAAAGTAATCTAATAAATCAATAAAGCATTGAATTTAT
23063869 A
1 A
23063870 ATTTTAATGG
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
48 29 0.64
49 16 0.36
ACGTcount: A:0.53, C:0.05, G:0.10, T:0.32
Consensus pattern (49 bp):
ATAAGCAAATGAAAAGTAATCTAATAAATCAATAAAGCATTGAATTTAT
Found at i:23071938 original size:28 final size:29
Alignment explanation
Indices: 23071901--23071959 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
23071891 AAATTATAGT
*
23071901 AAAATATTTAAT-AGATATTTAAATTAAA
1 AAAATATTTAATGAGATATATAAATTAAA
* * *
23071929 AAAATTTTTAATGTGATATATGAATTAAA
1 AAAATATTTAATGAGATATATAAATTAAA
23071958 AA
1 AA
23071960 TATGTTAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 11 0.42
29 15 0.58
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (29 bp):
AAAATATTTAATGAGATATATAAATTAAA
Found at i:23071967 original size:28 final size:26
Alignment explanation
Indices: 23071901--23071968 Score: 64
Period size: 28 Copynumber: 2.5 Consensus size: 26
23071891 AAATTATAGT
*
23071901 AAAATATTTAATAGATATTTAAATTAAA
1 AAAATATTTAATAGATATATAAATT--A
* * *
23071929 AAAATTTTTAATGTGATATATGAATTA
1 AAAATATTTAAT-AGATATATAAATTA
23071956 AAAATATGTTAAT
1 AAAATAT-TTAAT
23071969 TAATGTGATA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
27 7 0.21
28 16 0.48
29 10 0.30
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.41
Consensus pattern (26 bp):
AAAATATTTAATAGATATATAAATTA
Found at i:23074406 original size:30 final size:29
Alignment explanation
Indices: 23074365--23074446 Score: 87
Period size: 30 Copynumber: 2.8 Consensus size: 29
23074355 TTCTGATCTA
*
23074365 TTTTATTTTTTAAAATAAATTTTTATATTT
1 TTTTATATTTT-AAATAAATTTTTATATTT
* *
23074395 TTTTATATTTTAAA-AATTTTTTATTTTT
1 TTTTATATTTTAAATAAATTTTTATATTT
*
23074423 TAATTTATA-TTTAAATAAAATTTT
1 T--TTTATATTTTAAATAAATTTTT
23074447 GTTTTAAATA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
28 13 0.30
29 9 0.20
30 22 0.50
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (29 bp):
TTTTATATTTTAAATAAATTTTTATATTT
Found at i:23078927 original size:21 final size:21
Alignment explanation
Indices: 23078895--23078943 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
23078885 TCTGGCGTGT
*
23078895 TTGGATTGGATTGTCTTCGGTC
1 TTGGA-TGGATTGTCTTCGATC
* *
23078917 TTGGATGGATTGTTTTTGATC
1 TTGGATGGATTGTCTTCGATC
23078938 TTGGAT
1 TTGGAT
23078944 CATTTGGATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 19 0.79
22 5 0.21
ACGTcount: A:0.12, C:0.08, G:0.31, T:0.49
Consensus pattern (21 bp):
TTGGATGGATTGTCTTCGATC
Found at i:23079291 original size:30 final size:28
Alignment explanation
Indices: 23079244--23079300 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 28
23079234 TGGTCTGTAT
*
23079244 TATAAGTTCAAATAAAAATTAAAAAAATA
1 TATAAATTCAAATAAAAA-TAAAAAAATA
23079273 TATAAATTCAATATAAAAATAAAAAAAT
1 TATAAATTCAA-ATAAAAATAAAAAAAT
23079301 CCAAAGCATT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 19 0.73
30 7 0.27
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.28
Consensus pattern (28 bp):
TATAAATTCAAATAAAAATAAAAAAATA
Found at i:23081908 original size:15 final size:16
Alignment explanation
Indices: 23081888--23081921 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
23081878 TTAATTTGAA
*
23081888 AATATAAAA-ATTTAT
1 AATATAAAATAATTAT
23081903 AATATAAAATAATTAT
1 AATATAAAATAATTAT
23081919 AAT
1 AAT
23081922 TTTAAGATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
AATATAAAATAATTAT
Found at i:23082380 original size:16 final size:17
Alignment explanation
Indices: 23082356--23082388 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
23082346 TAATAATTAT
*
23082356 AAATAATAAAATTTTTA
1 AAATAATAAAAATTTTA
23082373 AAAT-ATAAAAATTTTA
1 AAATAATAAAAATTTTA
23082389 GCTAAGCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AAATAATAAAAATTTTA
Found at i:23082963 original size:1 final size:1
Alignment explanation
Indices: 23082957--23083006 Score: 55
Period size: 1 Copynumber: 50.0 Consensus size: 1
23082947 CGACTACCAG
* * * * *
23082957 AAAAAAAAAACAAAAAAACAAAAAAACAAAAAAAAAAAACAAAACAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
23083007 CTTTGTTGTG
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:23082973 original size:8 final size:8
Alignment explanation
Indices: 23082960--23083006 Score: 67
Period size: 8 Copynumber: 5.6 Consensus size: 8
23082950 CTACCAGAAA
23082960 AAAAAAAC
1 AAAAAAAC
23082968 AAAAAAAC
1 AAAAAAAC
23082976 AAAAAAAC
1 AAAAAAAC
*
23082984 AAAAAAAAA
1 -AAAAAAAC
23082993 AAACAAAAC
1 AAA-AAAAC
23083002 AAAAA
1 AAAAA
23083007 CTTTGTTGTG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
8 21 0.60
9 14 0.40
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:23082979 original size:13 final size:13
Alignment explanation
Indices: 23082957--23083006 Score: 66
Period size: 13 Copynumber: 3.7 Consensus size: 13
23082947 CGACTACCAG
23082957 AAAAAAAAAACAA-
1 AAAAAAAAAA-AAC
23082970 AAAAACAAAAAAAC
1 AAAAA-AAAAAAAC
23082984 AAAAAAAAAAAAC
1 AAAAAAAAAAAAC
23082997 AAAACAAAAA
1 AAAA-AAAAA
23083007 CTTTGTTGTG
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
13 19 0.56
14 15 0.44
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAAAC
Found at i:23082981 original size:16 final size:16
Alignment explanation
Indices: 23082957--23083006 Score: 73
Period size: 17 Copynumber: 3.0 Consensus size: 16
23082947 CGACTACCAG
23082957 AAAAAAAAAACAAAAA
1 AAAAAAAAAACAAAAA
*
23082973 AACAAAAAAACAAAAAA
1 AAAAAAAAAAC-AAAAA
23082990 AAAAAACAAAACAAAAA
1 AAAAAA-AAAACAAAAA
23083007 CTTTGTTGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
16 10 0.33
17 15 0.50
18 5 0.17
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAACAAAAA
Found at i:23082981 original size:18 final size:17
Alignment explanation
Indices: 23082957--23083006 Score: 75
Period size: 16 Copynumber: 2.9 Consensus size: 17
23082947 CGACTACCAG
23082957 AAAAAAAAAAC-AAAAA
1 AAAAAAAAAACAAAAAA
*
23082973 AACAAAAAAACAAAAAA
1 AAAAAAAAAACAAAAAA
23082990 AAAAAACAAAACAAAAA
1 AAAAAA-AAAACAAAAA
23083007 CTTTGTTGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.33
17 10 0.33
18 10 0.33
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAACAAAAAA
Found at i:23082987 original size:21 final size:20
Alignment explanation
Indices: 23082957--23083006 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 20
23082947 CGACTACCAG
*
23082957 AAAAAAAAAACAAAAAAACA
1 AAAAAAAAAAAAAAAAAACA
23082977 AAAAAACAAAAAAAAAAAACA
1 AAAAAA-AAAAAAAAAAAACA
23082998 AAACAAAAA
1 AAA-AAAAA
23083007 CTTTGTTGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 6 0.22
21 18 0.67
22 3 0.11
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (20 bp):
AAAAAAAAAAAAAAAAAACA
Found at i:23085148 original size:37 final size:38
Alignment explanation
Indices: 23085098--23085177 Score: 135
Period size: 38 Copynumber: 2.1 Consensus size: 38
23085088 ATAGTCCATA
*
23085098 GTCATGCATCAAGTAATCTT-AGAATGCATGATGGTAT
1 GTCATGCATCAAGTAACCTTAAGAATGCATGATGGTAT
*
23085135 GTCATGCATCAAGTAGCCTTAAGAATGCATGATGGTAT
1 GTCATGCATCAAGTAACCTTAAGAATGCATGATGGTAT
23085173 GTCAT
1 GTCAT
23085178 ATAGTAAAAC
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
37 18 0.45
38 22 0.55
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (38 bp):
GTCATGCATCAAGTAACCTTAAGAATGCATGATGGTAT
Found at i:23086007 original size:33 final size:33
Alignment explanation
Indices: 23085967--23086429 Score: 205
Period size: 33 Copynumber: 14.4 Consensus size: 33
23085957 ATCAGAGTTT
* *
23085967 AAAATGAAATGATCTAGACTAAACCAAAGTCTA
1 AAAATGAAATGACCTTGACTAAACCAAAGTCTA
** * * * *
23086000 AAAATGAAATGGTCTTGATTGAACTAAACTCTA
1 AAAATGAAATGACCTTGACTAAACCAAAGTCTA
* * * * *
23086033 AAATTAAAAAGACC-TGAACGAAACCAAAGTTTA
1 AAAATGAAATGACCTTG-ACTAAACCAAAGTCTA
* *
23086066 AAAATGACATAACCTTGA-TGAAACCAAAGTCT-
1 AAAATGAAATGACCTTGACT-AAACCAAAGTCTA
* * * * * *
23086098 ACAA--AAAT-AACTAGGACGAAAGCAAAATCTA
1 AAAATGAAATGACCT-TGACTAAACCAAAGTCTA
* * **
23086129 AAAATGAGATGA-CTTGAATGAAATAAAAGTCTA
1 AAAATGAAATGACCTTGACT-AAACCAAAGTCTA
* * * * **
23086162 AAAAAGAAATTACCTAGACAAAATTAAAGTCTA
1 AAAATGAAATGACCTTGACTAAACCAAAGTCTA
* * *
23086195 AAAATGAAATGA-CTTGAATGAAGCCAAAGTTTA
1 AAAATGAAATGACCTTGACT-AAACCAAAGTCTA
* *
23086228 TAAATGAAAT-AACTTG--T-----AAAGTCTA
1 AAAATGAAATGACCTTGACTAAACCAAAGTCTA
* * *
23086253 AAAGTGAAATGA-CTTGAATGAAACCAATGATCT-
1 AAAATGAAATGACCTTGACT-AAACCAAAG-TCTA
* * *
23086286 ACAATGAAATAACCTAGA-TGAAACCAAAGTCTA
1 AAAATGAAATGACCTTGACT-AAACCAAAGTCTA
* *
23086319 AACATGAAATGA-CTTGGACGAAACCAAAGTCTA
1 AAAATGAAATGACCTT-GACTAAACCAAAGTCTA
** * ** *
23086352 AATTTGAAATGACCTAGAGAAAACTAAAGTCTA
1 AAAATGAAATGACCTTGACTAAACCAAAGTCTA
* *
23086385 AAAATTAAATGA-TTTGGA-TGAAACCAAAGTCTA
1 AAAATGAAATGACCTT-GACT-AAACCAAAGTCTA
23086418 AAAATGAAATGA
1 AAAATGAAATGA
23086430 TTTGAATGAA
Statistics
Matches: 316, Mismatches: 84, Indels: 60
0.69 0.18 0.13
Matches are distributed among these distances:
25 19 0.06
26 1 0.00
27 1 0.00
29 3 0.01
30 15 0.05
31 4 0.01
32 18 0.06
33 239 0.76
34 16 0.05
ACGTcount: A:0.50, C:0.13, G:0.14, T:0.22
Consensus pattern (33 bp):
AAAATGAAATGACCTTGACTAAACCAAAGTCTA
Found at i:23086207 original size:66 final size:65
Alignment explanation
Indices: 23085967--23086427 Score: 297
Period size: 66 Copynumber: 7.2 Consensus size: 65
23085957 ATCAGAGTTT
* * * * * * * *
23085967 AAAATGAAATGATCTAGACTAAACCAAAGTCTAAAAATGAAATGGTCTTGATTG-AACTAAACTC
1 AAAATGAAATTACCTAGA-AAAACTAAAGTCTAAAAATGAAAT-GACTTGAATGAAACCAAAGTC
23086031 TA
64 TA
* * ** * * * *
23086033 AAATTAAAAAGACCT-GAACGAAACCAAAGTTTAAAAATGACATAACCTTG-ATGAAACCAAAGT
1 AAAATGAAATTACCTAGAA--AAACTAAAGTCTAAAAATGAAATGA-CTTGAATGAAACCAAAGT
23086096 CT-
63 CTA
* * * * * **
23086098 ACAA--AAA-TAACTAGGACGAAAGC-AAAATCTAAAAATGAGATGACTTGAATGAAATAAAAGT
1 AAAATGAAATTACCTA-GA--AAAACTAAAGTCTAAAAATGAAATGACTTGAATGAAACCAAAGT
23086159 CTA
63 CTA
* * * *
23086162 AAAAAGAAATTACCTAGACAAAATTAAAGTCTAAAAATGAAATGACTTGAATGAAGCCAAAGTTT
1 AAAATGAAATTACCTAGA-AAAACTAAAGTCTAAAAATGAAATGACTTGAATGAAACCAAAGTCT
23086227 A
65 A
* * * * *
23086228 TAAATGAAA-TAACTTG------TAAAGTCTAAAAGTGAAATGACTTGAATGAAACCAATGATCT
1 AAAATGAAATTACCTAGAAAAACTAAAGTCTAAAAATGAAATGACTTGAATGAAACCAAAG-TCT
23086286 -
65 A
* * * * * * *
23086286 ACAATGAAATAACCTAGATGAAACCAAAGTCTAAACATGAAATGACTTGGACGAAACCAAAGTCT
1 AAAATGAAATTACCTAGA-AAAACTAAAGTCTAAAAATGAAATGACTTGAATGAAACCAAAGTCT
23086351 A
65 A
** * * * *
23086352 AATTTGAAATGACCTAGAGAAAACTAAAGTCTAAAAATTAAATGATTTGGATGAAACCAAAGTCT
1 AAAATGAAATTACCTAGA-AAAACTAAAGTCTAAAAATGAAATGACTTGAATGAAACCAAAGTCT
23086417 A
65 A
23086418 AAAATGAAAT
1 AAAATGAAAT
23086428 GATTTGAATG
Statistics
Matches: 305, Mismatches: 66, Indels: 48
0.73 0.16 0.11
Matches are distributed among these distances:
58 42 0.14
59 6 0.02
62 7 0.02
63 32 0.10
64 8 0.03
65 17 0.06
66 188 0.62
67 5 0.02
ACGTcount: A:0.50, C:0.13, G:0.14, T:0.23
Consensus pattern (65 bp):
AAAATGAAATTACCTAGAAAAACTAAAGTCTAAAAATGAAATGACTTGAATGAAACCAAAGTCTA
Found at i:23086292 original size:58 final size:58
Alignment explanation
Indices: 23086186--23086298 Score: 165
Period size: 58 Copynumber: 1.9 Consensus size: 58
23086176 TAGACAAAAT
* *
23086186 TAAAGTCTAAAAATGAAATGACTTGAATGAAGCCAAAGTTTATAAATGAAATAACTTG
1 TAAAGTCTAAAAATGAAATGACTTGAATGAAACCAAAGTCTATAAATGAAATAACTTG
* * *
23086244 TAAAGTCTAAAAGTGAAATGACTTGAATGAAACCAATGATCTA-CAATGAAATAAC
1 TAAAGTCTAAAAATGAAATGACTTGAATGAAACCAAAG-TCTATAAATGAAATAAC
23086299 CTAGATGAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
58 46 0.94
59 3 0.06
ACGTcount: A:0.49, C:0.11, G:0.15, T:0.26
Consensus pattern (58 bp):
TAAAGTCTAAAAATGAAATGACTTGAATGAAACCAAAGTCTATAAATGAAATAACTTG
Found at i:23086301 original size:124 final size:124
Alignment explanation
Indices: 23086125--23086348 Score: 288
Period size: 124 Copynumber: 1.8 Consensus size: 124
23086115 GAAAGCAAAA
* * * **
23086125 TCTAAAAATGAGATGACTTGAATGAAATAAAAGTCTAAAAAAGAAATTACCTAGACAAAATTAAA
1 TCTAAAAATGAAATGACTTGAATGAAACAAAAGTCTAAAAAAGAAATAACCTAGACAAAACCAAA
* *
23086190 GTCTAAAAATGAAATGACTTGAATGAAGCCAAAGTTTATAAATGAAATAACTTGTAAAG
66 GTCTAAAAATGAAATGACTTGAACGAAACCAAAGTTTATAAATGAAATAACTTGTAAAG
* * * * * **
23086249 TCTAAAAGTGAAATGACTTGAATGAAACCAATGATCT-ACAATGAAATAACCTAGATGAAACCAA
1 TCTAAAAATGAAATGACTTGAATGAAACAAAAG-TCTAAAAAAGAAATAACCTAGACAAAACCAA
* *
23086313 AGTCTAAACATGAAATGACTTGGACGAAACCAAAGT
65 AGTCTAAAAATGAAATGACTTGAACGAAACCAAAGT
23086349 CTAAATTTGA
Statistics
Matches: 83, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
124 80 0.96
125 3 0.04
ACGTcount: A:0.50, C:0.12, G:0.15, T:0.23
Consensus pattern (124 bp):
TCTAAAAATGAAATGACTTGAATGAAACAAAAGTCTAAAAAAGAAATAACCTAGACAAAACCAAA
GTCTAAAAATGAAATGACTTGAACGAAACCAAAGTTTATAAATGAAATAACTTGTAAAG
Found at i:23086350 original size:190 final size:186
Alignment explanation
Indices: 23086079--23086427 Score: 448
Period size: 190 Copynumber: 1.9 Consensus size: 186
23086069 ATGACATAAC
* *
23086079 CTTGATGAAACCAAAGTCTACAAAAATAACTAGGACGAAAGCAAAATCTAAAAATGAGATGACTT
1 CTTGATGAAACCAAAGTCTACAAAAATAACTAGGACGAAACCAAAATCTAAAAATGAAATGACTT
* * * *
23086144 GAATGAAATAAAAGTCTAAAAAAGAAATTACCTAGACAAAATTAAAGTCTAAAAATGAAATGACT
66 GAACGAAACAAAAGTCTAAAAAAGAAATGACCTAGACAAAACTAAAGTCTAAAAATGAAATGACT
* * *
23086209 TGAATGAAGCCAAAGTTTATAAATGAAATAACTTGTAAAGTCTAAAAGTGAAATGA
131 TGAATGAAACCAAAGTCTAAAAATGAAATAACTTGTAAAGTCTAAAAGTGAAATGA
* * * *
23086265 CTTGAATGAAACCAATGATCTACAATGAAATAACCTA-GATGAAACCAAAGTCTAAACATGAAAT
1 CTTG-ATGAAACCAAAG-TCTACAA--AAATAA-CTAGGACGAAACCAAAATCTAAAAATGAAAT
* * *** * *
23086329 GACTTGGACGAAACCAAAGTCTAAATTTGAAATGACCTAGAGAAAACTAAAGTCTAAAAATTAAA
61 GACTTGAACGAAACAAAAGTCTAAAAAAGAAATGACCTAGACAAAACTAAAGTCTAAAAATGAAA
* *
23086394 TGATTTGGATGAAACCAAAGTCTAAAAATGAAAT
126 TGACTTGAATGAAACCAAAGTCTAAAAATGAAAT
23086428 GATTTGAATG
Statistics
Matches: 136, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
186 4 0.03
187 11 0.08
188 7 0.05
190 111 0.82
191 3 0.02
ACGTcount: A:0.50, C:0.12, G:0.15, T:0.23
Consensus pattern (186 bp):
CTTGATGAAACCAAAGTCTACAAAAATAACTAGGACGAAACCAAAATCTAAAAATGAAATGACTT
GAACGAAACAAAAGTCTAAAAAAGAAATGACCTAGACAAAACTAAAGTCTAAAAATGAAATGACT
TGAATGAAACCAAAGTCTAAAAATGAAATAACTTGTAAAGTCTAAAAGTGAAATGA
Found at i:23086430 original size:33 final size:33
Alignment explanation
Indices: 23086245--23086526 Score: 218
Period size: 33 Copynumber: 8.6 Consensus size: 33
23086235 AATAACTTGT
* *
23086245 AAAGTCTAAAAGTGAAATGA-CTTGAATGAAACC
1 AAAGTCTAAAAATGAAATGACCTAG-ATGAAACC
* * *
23086278 AATGATCT-ACAATGAAATAACCTAGATGAAACC
1 AAAG-TCTAAAAATGAAATGACCTAGATGAAACC
* * * *
23086311 AAAGTCTAAACATGAAATGACTTGGACGAAACC
1 AAAGTCTAAAAATGAAATGACCTAGATGAAACC
** *
23086344 AAAGTCTAAATTTGAAATGACCTAGA-GAAAACT
1 AAAGTCTAAAAATGAAATGACCTAGATG-AAACC
* ** *
23086377 AAAGTCTAAAAATTAAATGATTTGGATGAAACC
1 AAAGTCTAAAAATGAAATGACCTAGATGAAACC
* *
23086410 AAAGTCTAAAAATGAAATGA-TTTGAATGAAACC
1 AAAGTCTAAAAATGAAATGACCTAG-ATGAAACC
* * * *
23086443 AAGGATCT-TAAATGAAATTACCTAAATGAAACC
1 AAAG-TCTAAAAATGAAATGACCTAGATGAAACC
* * * *
23086476 AAAGTTTAAAAA-GAAATAATCTAGTTGAAACC
1 AAAGTCTAAAAATGAAATGACCTAGATGAAACC
*
23086508 AAAGGTCT-TAAATGAAATG
1 AAA-GTCTAAAAATGAAATG
23086527 TAATTTTACA
Statistics
Matches: 196, Mismatches: 42, Indels: 22
0.75 0.16 0.08
Matches are distributed among these distances:
32 31 0.16
33 154 0.79
34 11 0.06
ACGTcount: A:0.49, C:0.12, G:0.15, T:0.23
Consensus pattern (33 bp):
AAAGTCTAAAAATGAAATGACCTAGATGAAACC
Found at i:23086459 original size:99 final size:97
Alignment explanation
Indices: 23086245--23086526 Score: 273
Period size: 99 Copynumber: 2.9 Consensus size: 97
23086235 AATAACTTGT
* * * * * * *
23086245 AAAGTCTAAAAGTGAAATGACTTGAATGAAACCAATGATCTACAATGAAATAACCTAGATGAAAC
1 AAAGTCT-AAATTGAAATGACCTAAATGAAACCAAAG-TCTAAAAAGAAATAATCTAGATGAAAC
* *
23086310 CAAAGTCTAAACATGAAATGACTTGGACGAAACC
64 CAAAGTCTAAAAATGAAATGACTTGAACGAAACC
* * * * * *
23086344 AAAGTCTAAATTTGAAATGACCTAGA-GAAAACTAAAGTCTAAAAATTAAATGATTTGGATGAAA
1 AAAGTCTAAA-TTGAAATGACCTAAATG-AAACCAAAGTCTAAAAA-GAAATAATCTAGATGAAA
* *
23086408 CCAAAGTCTAAAAATGAAATGATTTGAATGAAACC
63 CCAAAGTCTAAAAATGAAATGACTTGAACGAAACC
* * * *
23086443 AAGGATCTTAAA-TGAAATTACCTAAATGAAACCAAAGTTTAAAAAGAAATAATCTAGTTGAAAC
1 AAAG-TC-TAAATTGAAATGACCTAAATGAAACCAAAGTCTAAAAAGAAATAATCTAGATGAAAC
*
23086507 CAAAGGTCT-TAAATGAAATG
64 CAAA-GTCTAAAAATGAAATG
23086527 TAATTTTACA
Statistics
Matches: 148, Mismatches: 28, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
98 38 0.26
99 103 0.70
100 3 0.02
101 4 0.03
ACGTcount: A:0.49, C:0.12, G:0.15, T:0.23
Consensus pattern (97 bp):
AAAGTCTAAATTGAAATGACCTAAATGAAACCAAAGTCTAAAAAGAAATAATCTAGATGAAACCA
AAGTCTAAAAATGAAATGACTTGAACGAAACC
Found at i:23086517 original size:65 final size:66
Alignment explanation
Indices: 23086402--23086525 Score: 173
Period size: 65 Copynumber: 1.9 Consensus size: 66
23086392 AATGATTTGG
* *
23086402 ATGAAACCAAAGTCTAAAAATGAAATGATTTGAATGAAACCAAGGATCTTAAATGAAATTACCTA
1 ATGAAACCAAAGTCTAAAAATGAAATAATTAGAATGAAACCAAGGATCTTAAATGAAATTACCTA
23086467 A
66 A
* *
23086468 ATGAAACCAAAGTTTAAAAA-GAAATAATCTAG-TTGAAACCAAAGG-TCTTAAATGAAAT
1 ATGAAACCAAAGTCTAAAAATGAAATAAT-TAGAATGAAACC-AAGGATCTTAAATGAAAT
23086526 GTAATTTTAC
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
65 27 0.52
66 25 0.48
ACGTcount: A:0.51, C:0.11, G:0.14, T:0.24
Consensus pattern (66 bp):
ATGAAACCAAAGTCTAAAAATGAAATAATTAGAATGAAACCAAGGATCTTAAATGAAATTACCTA
A
Found at i:23086635 original size:19 final size:20
Alignment explanation
Indices: 23086597--23086635 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
23086587 GAAATGTAAT
23086597 TTTGAAGTTATTTTTTAAAA
1 TTTGAAGTTATTTTTTAAAA
23086617 TTTGAA-TT-TTTTTTCAAAA
1 TTTGAAGTTATTTTTT-AAAA
23086636 ATGACTTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 6 0.33
20 6 0.33
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (20 bp):
TTTGAAGTTATTTTTTAAAA
Found at i:23089414 original size:27 final size:27
Alignment explanation
Indices: 23089384--23089436 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
23089374 GATACAAACC
*
23089384 TTAAACCCTAAACCCTAAACCTTAAAT
1 TTAAACCCTAAACCCTAAACCCTAAAT
* * *
23089411 TTAAACCTTAAATCTTAAACCCTAAA
1 TTAAACCCTAAACCCTAAACCCTAAA
23089437 ACCAAATCCC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.28
Consensus pattern (27 bp):
TTAAACCCTAAACCCTAAACCCTAAAT
Found at i:23089417 original size:20 final size:20
Alignment explanation
Indices: 23089392--23089429 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
23089382 CCTTAAACCC
23089392 TAAACCCTAAACCTTAAATT
1 TAAACCCTAAACCTTAAATT
* *
23089412 TAAACCTTAAATCTTAAA
1 TAAACCCTAAACCTTAAA
23089430 CCCTAAAACC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.21, G:0.00, T:0.32
Consensus pattern (20 bp):
TAAACCCTAAACCTTAAATT
Done.