Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 143 of 190
Found at i:23245965 original size:25 final size:24
Alignment explanation
Indices: 23245920--23245966 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
23245910 TAGGCATAGA
* *
23245920 TTTAAAAAAAATATTTTTATTATT
1 TTTAAAAAAAATAATTATATTATT
*
23245944 TTTAAAAAAATTTAATTATATTA
1 TTTAAAAAAA-ATAATTATATTA
23245967 AACATTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 10 0.53
25 9 0.47
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
TTTAAAAAAAATAATTATATTATT
Found at i:23246000 original size:3 final size:3
Alignment explanation
Indices: 23245994--23246051 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
23245984 TACTATTACC
23245994 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
23246042 TTA TTA TTA T
1 TTA TTA TTA T
23246052 AGCTCCTAAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:23248146 original size:20 final size:21
Alignment explanation
Indices: 23248106--23248153 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
23248096 TATTTCTTTT
23248106 TTTTATTATCTATTATTACTA
1 TTTTATTATCTATTATTACTA
23248127 TTTTATTAT-TA-TATTTACTA
1 TTTTATTATCTATTA-TTACTA
*
23248147 TTGTATT
1 TTTTATT
23248154 TTTTATTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 2 0.08
20 14 0.56
21 9 0.36
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (21 bp):
TTTTATTATCTATTATTACTA
Found at i:23248212 original size:7 final size:6
Alignment explanation
Indices: 23248198--23248261 Score: 56
Period size: 7 Copynumber: 9.7 Consensus size: 6
23248188 TATTTTTTGG
* *
23248198 TTTTAA TTTTCAA TTTTCAA TTTTAAA TTTAAA TTTTAG TTTTAAA TTTTAAA
1 TTTTAA TTTT-AA TTTT-AA TTTT-AA TTTTAA TTTTAA TTTT-AA TTTT-AA
23248251 TTTTACA TTTT
1 TTTTA-A TTTT
23248262 TATATGCTTA
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
6 15 0.30
7 35 0.70
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.61
Consensus pattern (6 bp):
TTTTAA
Found at i:23248214 original size:13 final size:13
Alignment explanation
Indices: 23248198--23248261 Score: 67
Period size: 14 Copynumber: 4.8 Consensus size: 13
23248188 TATTTTTTGG
*
23248198 TTTTAATTTTCAA
1 TTTTAATTTTAAA
23248211 TTTTCAATTTTAAA
1 TTTT-AATTTTAAA
* *
23248225 TTTAAATTTT-AG
1 TTTTAATTTTAAA
23248237 TTTTAAATTTTAAA
1 TTTT-AATTTTAAA
23248251 TTTTACATTTT
1 TTTTA-ATTTT
23248262 TATATGCTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
12 4 0.10
13 17 0.40
14 21 0.50
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.61
Consensus pattern (13 bp):
TTTTAATTTTAAA
Found at i:23248221 original size:20 final size:19
Alignment explanation
Indices: 23248198--23248261 Score: 74
Period size: 20 Copynumber: 3.2 Consensus size: 19
23248188 TATTTTTTGG
*
23248198 TTTTAATTTTCAATTTTCAA
1 TTTTAATTTTAAATTTT-AA
* *
23248218 TTTTAAATTTAAATTTTAG
1 TTTTAATTTTAAATTTTAA
23248237 TTTTAAATTTTAAATTTTACA
1 TTTT-AATTTTAAATTTTA-A
23248258 TTTT
1 TTTT
23248262 TATATGCTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
19 5 0.14
20 28 0.76
21 4 0.11
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.61
Consensus pattern (19 bp):
TTTTAATTTTAAATTTTAA
Found at i:23254546 original size:26 final size:28
Alignment explanation
Indices: 23254492--23254546 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
23254482 GTTTTCATGG
23254492 TCTCTAATGTTTAAAAACATGGAATATA
1 TCTCTAATGTTTAAAAACATGGAATATA
* *
23254520 TCTCTAGTGTTTAAACACATGGAATAT
1 TCTCTAATGTTTAAAAACATGGAATAT
23254547 GTTTTATTCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (28 bp):
TCTCTAATGTTTAAAAACATGGAATATA
Found at i:23254681 original size:69 final size:69
Alignment explanation
Indices: 23254570--23254701 Score: 228
Period size: 69 Copynumber: 1.9 Consensus size: 69
23254560 TAACTTGATA
* *
23254570 TTTTCTCTAACTCTTTCAGATCCTTATAAACCCATCTATCACCTAGAAATCACATGGAAATTATG
1 TTTTCTCTAACTCTTTCAAATCCCTATAAACCCATCTATCACCTAGAAATCACATGGAAATTATG
23254635 TCTC
66 TCTC
* *
23254639 TTTTCTTTAACTCTTTCAAATCCCTATAAACCCATCTCTCACCTAGAAATCACATGGAAATTA
1 TTTTCTCTAACTCTTTCAAATCCCTATAAACCCATCTATCACCTAGAAATCACATGGAAATTA
23254702 CATCTCCCAT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
69 59 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.36
Consensus pattern (69 bp):
TTTTCTCTAACTCTTTCAAATCCCTATAAACCCATCTATCACCTAGAAATCACATGGAAATTATG
TCTC
Found at i:23255291 original size:40 final size:40
Alignment explanation
Indices: 23255246--23255492 Score: 237
Period size: 40 Copynumber: 6.2 Consensus size: 40
23255236 AAAAAACATT
* * *
23255246 AAATAAGGTGTTTGTAGGAA-AGAATGCTTTAATTGATATC
1 AAATAAGGCGTTTGTAGGAAGA-AACGCCTTAATTGATATC
* * *
23255286 AAATAAGGCGGTTGTAGGAACAAA-GCCTTAATTGATATT
1 AAATAAGGCGTTTGTAGGAAGAAACGCCTTAATTGATATC
* * * * *
23255325 AAATAAAGCGCTTGTAGGAAGAAATGCCCTAATTAATATC
1 AAATAAGGCGTTTGTAGGAAGAAACGCCTTAATTGATATC
* * *
23255365 AATTAAGGGGTTTGTAGGAAGAAACACCTTAATTGATATC
1 AAATAAGGCGTTTGTAGGAAGAAACGCCTTAATTGATATC
* *
23255405 AAATAAGGCCTTTGTAGGAAGAAACACCTTAATTGATATC
1 AAATAAGGCGTTTGTAGGAAGAAACGCCTTAATTGATATC
* * ** * ** * *
23255445 AATTATGATGCTTGTAAAAAGAAACGCTTTGATTGATATC
1 AAATAAGGCGTTTGTAGGAAGAAACGCCTTAATTGATATC
*
23255485 AATTAAGG
1 AAATAAGG
23255493 AAAAGCCTTA
Statistics
Matches: 171, Mismatches: 34, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
39 34 0.20
40 136 0.80
41 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (40 bp):
AAATAAGGCGTTTGTAGGAAGAAACGCCTTAATTGATATC
Found at i:23255380 original size:79 final size:80
Alignment explanation
Indices: 23255243--23255449 Score: 251
Period size: 79 Copynumber: 2.6 Consensus size: 80
23255233 TAGAAAAAAC
* * * *
23255243 ATTAAATAAGGTGTTTGTAGGAA-AGAATGCTTTAATTGATATCAAATAAGGCGGTTGTAGGAAC
1 ATTAAATAAGGCGCTTGTAGGAAGA-AATGCCTTAATTGATATCAATTAAGGCGGTTGTAGGAAC
*
23255307 AAA-GCCTTAATTGAT
65 AAACACCTTAATTGAT
* * * *
23255322 ATTAAATAAAGCGCTTGTAGGAAGAAATGCCCTAATTAATATCAATTAAGG-GGTTTGTAGGAAG
1 ATTAAATAAGGCGCTTGTAGGAAGAAATGCCTTAATTGATATCAATTAAGGCGG-TTGTAGGAAC
23255386 AAACACCTTAATTGAT
65 AAACACCTTAATTGAT
* **
23255402 ATCAAATAAGGC-CTTTGTAGGAAGAAACACCTTAATTGATATCAATTA
1 ATTAAATAAGGCGC-TTGTAGGAAGAAATGCCTTAATTGATATCAATTA
23255450 TGATGCTTGT
Statistics
Matches: 109, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
78 2 0.02
79 55 0.50
80 52 0.48
ACGTcount: A:0.40, C:0.11, G:0.20, T:0.30
Consensus pattern (80 bp):
ATTAAATAAGGCGCTTGTAGGAAGAAATGCCTTAATTGATATCAATTAAGGCGGTTGTAGGAACA
AACACCTTAATTGAT
Found at i:23256408 original size:40 final size:39
Alignment explanation
Indices: 23256346--23256449 Score: 104
Period size: 40 Copynumber: 2.6 Consensus size: 39
23256336 AAACATAACA
* *
23256346 TTAATTTATATTAAATAAGGTGCTTGCAAGAAA-AAACA-T
1 TTAATTGATATCAAATAAGGTGCTTG-AAGAAATAAA-AGT
* * *
23256385 CTTAATTGATATCAATTATGGTGCTTGTAGAAATAAAAGGT
1 -TTAATTGATATCAAATAAGGTGCTTGAAGAAATAAAA-GT
*
23256426 TTAATTGATATCAAATACGGTGCT
1 TTAATTGATATCAAATAAGGTGCT
23256450 AGTAGGAACA
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
39 6 0.11
40 47 0.87
41 1 0.02
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (39 bp):
TTAATTGATATCAAATAAGGTGCTTGAAGAAATAAAAGT
Found at i:23257695 original size:25 final size:25
Alignment explanation
Indices: 23257667--23257717 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
23257657 TTGTATTTGG
23257667 CTTCCAACTTGAGTTTCTGCTAAAA
1 CTTCCAACTTGAGTTTCTGCTAAAA
23257692 CTTCCAACTTGAGTTTCTGCTAAAA
1 CTTCCAACTTGAGTTTCTGCTAAAA
23257717 C
1 C
23257718 GCGAAGGAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.35
Consensus pattern (25 bp):
CTTCCAACTTGAGTTTCTGCTAAAA
Found at i:23279513 original size:17 final size:17
Alignment explanation
Indices: 23279491--23279523 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
23279481 TTAATGATTG
23279491 ATCATTTACATGCAAAC
1 ATCATTTACATGCAAAC
23279508 ATCATTTACATGCAAA
1 ATCATTTACATGCAAA
23279524 ATTTATGATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.21, G:0.06, T:0.30
Consensus pattern (17 bp):
ATCATTTACATGCAAAC
Found at i:23280006 original size:18 final size:18
Alignment explanation
Indices: 23279983--23280020 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
23279973 CTTAAAATGT
23279983 TTTAATATGTTGATAACA
1 TTTAATATGTTGATAACA
23280001 TTTAATATGTTGATAACA
1 TTTAATATGTTGATAACA
23280019 TT
1 TT
23280021 AAAATAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.37, C:0.05, G:0.11, T:0.47
Consensus pattern (18 bp):
TTTAATATGTTGATAACA
Found at i:23280202 original size:6 final size:5
Alignment explanation
Indices: 23280176--23280209 Score: 50
Period size: 5 Copynumber: 6.4 Consensus size: 5
23280166 ATTTGTACAT
23280176 TTTTA TTTTA TTTTA TTTTA TTATTA TTGTTA TT
1 TTTTA TTTTA TTTTA TTTTA TT-TTA TT-TTA TT
23280210 ATTTTTTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
5 17 0.63
6 10 0.37
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:23280257 original size:13 final size:13
Alignment explanation
Indices: 23280241--23280265 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23280231 TTTTTTAGAA
23280241 AATTTTGTTTACT
1 AATTTTGTTTACT
23280254 AATTTTGTTTAC
1 AATTTTGTTTAC
23280266 GTTTTTATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.08, T:0.60
Consensus pattern (13 bp):
AATTTTGTTTACT
Found at i:23280892 original size:21 final size:20
Alignment explanation
Indices: 23280868--23280926 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
23280858 TGCATGAATG
23280868 AATA-AAAATAAAATAAATAAA
1 AATACAAAATAAAA-AAAT-AA
* * *
23280889 AATAGATAACTAAAAAAATGA
1 AATACA-AAATAAAAAAATAA
23280910 AATACAAAATAAAAAAA
1 AATACAAAATAAAAAAA
23280927 ATTGAATTGG
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 10 0.31
21 10 0.31
22 5 0.16
23 7 0.22
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.17
Consensus pattern (20 bp):
AATACAAAATAAAAAAATAA
Found at i:23281035 original size:21 final size:21
Alignment explanation
Indices: 23280988--23281034 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
23280978 TTTGGGATAG
*
23280988 TTTTTTGGCAGTATGGAGTGA
1 TTTTTTGGCAGTATGAAGTGA
23281009 TTTTTTGGCAGTAT-AAG-GCA
1 TTTTTTGGCAGTATGAAGTG-A
23281029 TTTTTT
1 TTTTTT
23281035 TTATGATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 1 0.04
20 9 0.38
21 14 0.58
ACGTcount: A:0.19, C:0.06, G:0.26, T:0.49
Consensus pattern (21 bp):
TTTTTTGGCAGTATGAAGTGA
Found at i:23281538 original size:17 final size:19
Alignment explanation
Indices: 23281518--23281555 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
23281508 GCCAAAACTA
23281518 TTTTTTTCTT-TTT-TGGT
1 TTTTTTTCTTGTTTGTGGT
*
23281535 TTTTTTTTTTGTTTGTGGT
1 TTTTTTTCTTGTTTGTGGT
23281554 TT
1 TT
23281556 GTTCTTGGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 9 0.50
18 3 0.17
19 6 0.33
ACGTcount: A:0.00, C:0.03, G:0.16, T:0.82
Consensus pattern (19 bp):
TTTTTTTCTTGTTTGTGGT
Found at i:23282636 original size:46 final size:46
Alignment explanation
Indices: 23282532--23282842 Score: 266
Period size: 46 Copynumber: 6.7 Consensus size: 46
23282522 TCTTTTTTGT
* * * * * * *
23282532 GCTCCTCTCATTAAAGGCTCGATAATTTTTAAAACTCAAACTGAAAA
1 GCTCTTCTCATTAAAGGCTCGACAA-CTTTAAAAATTAAATTGAAAG
* * * *
23282579 GCTCCAT-TCATTAGAGACTCGACAACTTTAAAAATTAAATTGAACG
1 GCT-CTTCTCATTAAAGGCTCGACAACTTTAAAAATTAAATTGAAAG
* * * * *
23282625 GCTCTTCTCATTAAAGGTTTGTCAACTTTAAAACTTAAATTGCAAG
1 GCTCTTCTCATTAAAGGCTCGACAACTTTAAAAATTAAATTGAAAG
* ** * * **
23282671 GTTCTTCTTGTTAGAGGTTCGACAACTTTAAAAAAAAAATTGAAAG
1 GCTCTTCTCATTAAAGGCTCGACAACTTTAAAAATTAAATTGAAAG
* * *
23282717 ACTCATCTCATTAAAGGCTCGACAACTTTAAAAATCAAATTGAAAG
1 GCTCTTCTCATTAAAGGCTCGACAACTTTAAAAATTAAATTGAAAG
* * * *
23282763 GCTCTTCTCATTAAAGGCTCAACAACTTTAAAATTTAAACTGAAGG
1 GCTCTTCTCATTAAAGGCTCGACAACTTTAAAAATTAAATTGAAAG
* * * * *
23282809 GTTAC-TCTTATTATAGACTTGACAACTTTAAAAA
1 GCT-CTTCTCATTAAAGGCTCGACAACTTTAAAAA
23282843 AAATCTAATT
Statistics
Matches: 209, Mismatches: 52, Indels: 7
0.78 0.19 0.03
Matches are distributed among these distances:
45 2 0.01
46 186 0.89
47 19 0.09
48 2 0.01
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.32
Consensus pattern (46 bp):
GCTCTTCTCATTAAAGGCTCGACAACTTTAAAAATTAAATTGAAAG
Found at i:23282766 original size:138 final size:138
Alignment explanation
Indices: 23282586--23282845 Score: 355
Period size: 138 Copynumber: 1.9 Consensus size: 138
23282576 AAAGCTCCAT
* * * * ***
23282586 TCATTAGAGACTCGACAACTTTAAAAATTAAATTGAACGGCTCTTCTCATTAAAGGTTTGTCAAC
1 TCATTAAAGACTCGACAACTTTAAAAATCAAATTGAAAGGCTCTTCTCATTAAAGGCTCAACAAC
* * *
23282651 TTTAAAACTTAAATTGCAA-GGTT-CTTCTTGTTAGAG-GTTCGACAACTTTAAAAAAAAAATTG
66 TTTAAAACTTAAACTG-AAGGGTTAC-TCTTATTAGAGACTT-GACAACTTTAAAAAAAAAATTG
23282713 AAAGACTCATC
128 AAAGACTCATC
*
23282724 TCATTAAAGGCTCGACAACTTTAAAAATCAAATTGAAAGGCTCTTCTCATTAAAGGCTCAACAAC
1 TCATTAAAGACTCGACAACTTTAAAAATCAAATTGAAAGGCTCTTCTCATTAAAGGCTCAACAAC
* *
23282789 TTTAAAATTTAAACTGAAGGGTTACTCTTATTATAGACTTGACAACTTTAAAAAAAA
66 TTTAAAACTTAAACTGAAGGGTTACTCTTATTAGAGACTTGACAACTTTAAAAAAAA
23282846 TCTAATTTGA
Statistics
Matches: 106, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
137 2 0.02
138 101 0.95
139 3 0.03
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.32
Consensus pattern (138 bp):
TCATTAAAGACTCGACAACTTTAAAAATCAAATTGAAAGGCTCTTCTCATTAAAGGCTCAACAAC
TTTAAAACTTAAACTGAAGGGTTACTCTTATTAGAGACTTGACAACTTTAAAAAAAAAATTGAAA
GACTCATC
Found at i:23285216 original size:108 final size:108
Alignment explanation
Indices: 23285022--23285223 Score: 386
Period size: 108 Copynumber: 1.9 Consensus size: 108
23285012 ATAATACGAA
23285022 GGTCATCCATCTACCTCATTATCAACTCTTAAGCAATGTGCCAATGATTCATTTATGTTTAATTT
1 GGTCATCCATCTACCTCATTATCAACTCTTAAGCAATGTGCCAATGATTCATTTATGTTTAATTT
*
23285087 GATGGGTCAAATCTCTGCATCTGCATTTATGTTTAATTTGATG
66 GATGGGTCAAATCTCTACATCTGCATTTATGTTTAATTTGATG
*
23285130 GGTCATCCATCTATCTCATTATCAACTCTTAAGCAATGTGCCAATGATTCATTTATGTTTAATTT
1 GGTCATCCATCTACCTCATTATCAACTCTTAAGCAATGTGCCAATGATTCATTTATGTTTAATTT
23285195 GATGGGTCAAATCTCTACATCTGCATTTA
66 GATGGGTCAAATCTCTACATCTGCATTTA
23285224 GCTTGGACAT
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
108 92 1.00
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.40
Consensus pattern (108 bp):
GGTCATCCATCTACCTCATTATCAACTCTTAAGCAATGTGCCAATGATTCATTTATGTTTAATTT
GATGGGTCAAATCTCTACATCTGCATTTATGTTTAATTTGATG
Found at i:23291415 original size:14 final size:15
Alignment explanation
Indices: 23291378--23291418 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
23291368 ATATTCATAC
23291378 ATTTATTT-TTACAT
1 ATTTATTTATTACAT
*
23291392 ATTTATTTTATTTCAT
1 ATTTA-TTTATTACAT
23291408 -TTTATTTATTA
1 ATTTATTTATTA
23291419 TTGTTATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 11 0.48
15 7 0.30
16 5 0.22
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (15 bp):
ATTTATTTATTACAT
Found at i:23291417 original size:23 final size:24
Alignment explanation
Indices: 23291391--23291443 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 24
23291381 TATTTTTACA
*
23291391 TATTTATT-TTATT-TCATTTTATT
1 TATTTATTGTTATTAT-ATTTTAAT
*
23291414 TA-TTATTGTTATTATTTTTTAAT
1 TATTTATTGTTATTATATTTTAAT
23291437 TATTTAT
1 TATTTAT
23291444 CTTTTTTTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
22 5 0.20
23 15 0.60
24 5 0.20
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.72
Consensus pattern (24 bp):
TATTTATTGTTATTATATTTTAAT
Found at i:23292505 original size:19 final size:18
Alignment explanation
Indices: 23292482--23292516 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
23292472 CTTCTTTCAA
23292482 AAAAAAAAAACTTTAAAT
1 AAAAAAAAAACTTTAAAT
*
23292500 AAAAAAGAAACTTTAAA
1 AAAAAAAAAACTTTAAA
23292517 GCTACCTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.71, C:0.06, G:0.03, T:0.20
Consensus pattern (18 bp):
AAAAAAAAAACTTTAAAT
Found at i:23298347 original size:87 final size:87
Alignment explanation
Indices: 23298243--23298415 Score: 301
Period size: 87 Copynumber: 2.0 Consensus size: 87
23298233 ATTCTTAAAA
*
23298243 AATCACTACTCGGATTTCTTTATGATCTCATCCTCGGAGATGTTCCATTTGTTTTTAAAAATTAT
1 AATCACTACTCGGATTTCTTTATGATCTCATCCTCAGAGATGTTCCATTTGTTTTTAAAAATTAT
23298308 TAAAAGTAATATAATAATATAG
66 TAAAAGTAATATAATAATATAG
**
23298330 AATCACTACTCGGATTTCTTTATGATCTCATCCTCAGAGATGTTTTATTTGTTTTTAAAAATTAT
1 AATCACTACTCGGATTTCTTTATGATCTCATCCTCAGAGATGTTCCATTTGTTTTTAAAAATTAT
* *
23298395 TAAAAGTCATGTAATAATATA
66 TAAAAGTAATATAATAATATA
23298416 ATTATTTACA
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 81 1.00
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.42
Consensus pattern (87 bp):
AATCACTACTCGGATTTCTTTATGATCTCATCCTCAGAGATGTTCCATTTGTTTTTAAAAATTAT
TAAAAGTAATATAATAATATAG
Found at i:23300117 original size:62 final size:62
Alignment explanation
Indices: 23299999--23300118 Score: 145
Period size: 62 Copynumber: 1.9 Consensus size: 62
23299989 GTTTCTAGTA
* * *
23299999 AAAAATACCTTCAATAATCTCCTTTAATTTTTATGAGGTGATTATTCAAGATATTTTTAGCT
1 AAAAATACCTTAAATAATCTCCTTCAATTTTTATGAGGTGATTATTCAAGACATTTTTAGCT
* * * *
23300061 AAAAATGCCTTAAATGATCTCCTTCAATTTTGTATTG-GG-GGTTATTCAAGGCATTTTT
1 AAAAATACCTTAAATAATCTCCTTCAATTTT-TA-TGAGGTGATTATTCAAGACATTTTT
23300119 TTCTTAGAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
62 43 0.88
63 4 0.08
64 2 0.04
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.42
Consensus pattern (62 bp):
AAAAATACCTTAAATAATCTCCTTCAATTTTTATGAGGTGATTATTCAAGACATTTTTAGCT
Found at i:23300172 original size:126 final size:125
Alignment explanation
Indices: 23300040--23300267 Score: 302
Period size: 126 Copynumber: 1.8 Consensus size: 125
23300030 TATGAGGTGA
* * * *
23300040 TTATTCAAGATATTTTT-AGCTAAAAATGCCTTAAATGAT-CTCCTTCAATTTTGTATT-GGGGG
1 TTATTCAAGATATTTTTGA-CTAAAAACGCCTTAAATAATCCT-CTTCAATTTT-TATTAGAGGA
* *
23300102 TTATTCAAGGCATTTTTTT-CTTAGAAAATGCCTTGAATAATTCTTTACAAAAAATTTGAATAGG
63 TTATTCAAGGCATTTTTTTGC-CA-AAAACGCCTTGAATAATTCTTTACAAAAAATTTGAATAGG
* * *
23300166 TTATTCAAGGTATTTTTGACTAAAAACGCTTTTAATAATCCTCTTCAATTTTTATTAGAGGATTA
1 TTATTCAAGATATTTTTGACTAAAAACGCCTTAAATAATCCTCTTCAATTTTTATTAGAGGATTA
23300231 TTCAAGGCATTTTTTTGCCAAAAACGCCTTGAATAAT
66 TTCAAGGCATTTTTTTGCCAAAAACGCCTTGAATAAT
23300268 CCCTAATAAA
Statistics
Matches: 89, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
125 20 0.22
126 65 0.73
127 4 0.04
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.41
Consensus pattern (125 bp):
TTATTCAAGATATTTTTGACTAAAAACGCCTTAAATAATCCTCTTCAATTTTTATTAGAGGATTA
TTCAAGGCATTTTTTTGCCAAAAACGCCTTGAATAATTCTTTACAAAAAATTTGAATAGG
Found at i:23300295 original size:63 final size:63
Alignment explanation
Indices: 23300100--23300300 Score: 159
Period size: 62 Copynumber: 3.2 Consensus size: 63
23300090 TTGTATTGGG
* **
23300100 GGTTATTCAAGGCATTTTTTT-CTTAGAAAATGCCTTGAATAATTCTTTACA-AAAAATTTGAA-
1 GGTTATTCAAGGCATTTTTTTGC-TA-AAAACGCCTTGAATAA-TCCCTA-ATAAAAA-TTGAAT
23300162 T-A
61 TGA
* * * * * **
23300164 GGTTATTCAAGG--TATTTTTGACTAAAAACGCTTTTAATAATCCTCT--T-CAATTTTTATTAG
1 GGTTATTCAAGGCATTTTTTTG-CTAAAAACGCCTTGAATAATCC-CTAATAAAAATTGAATT-G
23300224 A
63 A
*
23300225 GGATTATTCAAGGCATTTTTTTGCCAAAAACGCCTTGAATAATCCCTAATAAAAATTGAATTGA
1 GG-TTATTCAAGGCATTTTTTTGCTAAAAACGCCTTGAATAATCCCTAATAAAAATTGAATTGA
23300289 GGTTATTCAAGG
1 GGTTATTCAAGG
23300301 TGTTTCTGGC
Statistics
Matches: 106, Mismatches: 18, Indels: 27
0.70 0.12 0.18
Matches are distributed among these distances:
58 3 0.03
59 3 0.03
61 5 0.05
62 32 0.30
63 31 0.29
64 25 0.24
65 7 0.07
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.39
Consensus pattern (63 bp):
GGTTATTCAAGGCATTTTTTTGCTAAAAACGCCTTGAATAATCCCTAATAAAAATTGAATTGA
Found at i:23305442 original size:143 final size:143
Alignment explanation
Indices: 23305163--23305566 Score: 438
Period size: 143 Copynumber: 2.8 Consensus size: 143
23305153 TTAAAAATAT
* * * * **
23305163 CAAAAATCATGAAATATTATAAAATTGAGACCTAAAATGTTTCATAAAAATCCAAGCTCGGGAAG
1 CAAAAATCATGAAATATTATAAAATTAAGATCTAAAAAGTTTCAT--GAATCCAAGCTCGAAAAG
* * * * * * *
23305228 GTCAAATTACAAAAATACT-TCAATAGGGGTATTTTGGTAATTTCATACTTTTTAAGGTACTACT
64 GCCAAATTACAAAAATACTCT-TATAAGGGTATTTTGATAATTTTATACTTTTCAAGGCACTACT
* *
23305292 GTTATTTCGAATGCAC
128 GTGATTTCAAATGCAC
* *
23305308 CAAAAATAATGAAATATTATAAAATTAAGATCTAAAAAGTTTCATGAATCCAAGCTCGAAAAAGC
1 CAAAAATCATGAAATATTATAAAATTAAGATCTAAAAAGTTTCATGAATCCAAGCTCGAAAAGGC
** ** **
23305373 CAAATTATGAAAATACTCTTATAAGGGTATTTTGATAATTTTATACTTTTCGGGGCACTGTTGTG
66 CAAATTACAAAAATACTCTTATAAGGGTATTTTGATAATTTTATACTTTTCAAGGCACTACTGTG
23305438 ATTTCAAATGCAC
131 ATTTCAAATGCAC
* * * * *
23305451 CAAAAATCATGAAATATTATGAAATTAAGATATGAAAAGTTTTATGAAAATCCAATCTC-AAGAA
1 CAAAAATCATGAAATATTATAAAATTAAGATCTAAAAAGTTTCATG--AATCCAAGCTCGAA-AA
* * *
23305515 GGCCAAATTACAAAAATACCCCTA-AAGGGTATTTT-AGTAATTTTGTACTTTT
63 GGCCAAATTACAAAAATACTCTTATAAGGGTATTTTGA-TAATTTTATACTTTT
23305567 TCCAATGCAA
Statistics
Matches: 219, Mismatches: 35, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
143 119 0.54
144 28 0.13
145 72 0.33
ACGTcount: A:0.41, C:0.13, G:0.14, T:0.32
Consensus pattern (143 bp):
CAAAAATCATGAAATATTATAAAATTAAGATCTAAAAAGTTTCATGAATCCAAGCTCGAAAAGGC
CAAATTACAAAAATACTCTTATAAGGGTATTTTGATAATTTTATACTTTTCAAGGCACTACTGTG
ATTTCAAATGCAC
Found at i:23307043 original size:18 final size:17
Alignment explanation
Indices: 23307022--23307055 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
23307012 TATTTAAAAA
23307022 TATATATTAACATATATT
1 TATATATTAA-ATATATT
*
23307040 TATATTTTAAATATAT
1 TATATATTAAATATAT
23307056 ATTTTAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (17 bp):
TATATATTAAATATATT
Found at i:23307069 original size:29 final size:31
Alignment explanation
Indices: 23307014--23307075 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
23307004 TATATTTTTA
*
23307014 TTTAAAAATATATATTAACATATATTTATAT
1 TTTAAAAATATATATTAACATAAATTTATAT
* *
23307045 TTTAAATATATATTTTAA-A-AAATTTATAT
1 TTTAAAAATATATATTAACATAAATTTATAT
23307074 TT
1 TT
23307076 ATTTTTTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 11 0.39
30 1 0.04
31 16 0.57
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (31 bp):
TTTAAAAATATATATTAACATAAATTTATAT
Found at i:23308649 original size:25 final size:25
Alignment explanation
Indices: 23308614--23308670 Score: 105
Period size: 25 Copynumber: 2.3 Consensus size: 25
23308604 AAATAAACGT
*
23308614 CAGCCATTAACCCATGTACAGTATA
1 CAGCCACTAACCCATGTACAGTATA
23308639 CAGCCACTAACCCATGTACAGTATA
1 CAGCCACTAACCCATGTACAGTATA
23308664 CAGCCAC
1 CAGCCAC
23308671 AGCCGCGTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.35, C:0.33, G:0.12, T:0.19
Consensus pattern (25 bp):
CAGCCACTAACCCATGTACAGTATA
Found at i:23309458 original size:3 final size:3
Alignment explanation
Indices: 23309450--23309476 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
23309440 AAAATGGAAG
23309450 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
23309477 TTGGTTTTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:23316182 original size:17 final size:16
Alignment explanation
Indices: 23316162--23316205 Score: 70
Period size: 16 Copynumber: 2.7 Consensus size: 16
23316152 GAGTAAAAGC
23316162 AAAAGAAGAAAAAAATA
1 AAAAGAA-AAAAAAATA
*
23316179 AAAACAAAAAAAAATA
1 AAAAGAAAAAAAAATA
23316195 AAAAGAAAAAA
1 AAAAGAAAAAA
23316206 GAAAAATCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 19 0.76
17 6 0.24
ACGTcount: A:0.86, C:0.02, G:0.07, T:0.05
Consensus pattern (16 bp):
AAAAGAAAAAAAAATA
Found at i:23316197 original size:22 final size:22
Alignment explanation
Indices: 23316155--23316204 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
23316145 GTGTGGAGAG
* *
23316155 TAAAAGCAAAAGAAGAAAAAAA
1 TAAAAACAAAAGAAAAAAAAAA
23316177 TAAAAACAAAA-AAAAATAAAAA
1 TAAAAACAAAAGAAAAA-AAAAA
*
23316199 GAAAAA
1 TAAAAA
23316205 AGAAAAATCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 4 0.17
22 20 0.83
ACGTcount: A:0.82, C:0.04, G:0.08, T:0.06
Consensus pattern (22 bp):
TAAAAACAAAAGAAAAAAAAAA
Found at i:23319554 original size:19 final size:20
Alignment explanation
Indices: 23319527--23319564 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
23319517 TTCCAACGAC
*
23319527 TTTTTGATGA-AAAACCCAG
1 TTTTCGATGATAAAACCCAG
23319546 TTTTCGATGATAAAACCCA
1 TTTTCGATGATAAAACCCA
23319565 AAAATCAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (20 bp):
TTTTCGATGATAAAACCCAG
Found at i:23319923 original size:12 final size:13
Alignment explanation
Indices: 23319906--23319937 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
23319896 GTTTTTAATC
23319906 TTATTTATA-TAT
1 TTATTTATATTAT
23319918 TTATTT-TATTAT
1 TTATTTATATTAT
23319930 TTATTTAT
1 TTATTTAT
23319938 TAATATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 2 0.11
12 15 0.83
13 1 0.06
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TTATTTATATTAT
Found at i:23319934 original size:16 final size:17
Alignment explanation
Indices: 23319910--23319948 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
23319900 TTAATCTTAT
* *
23319910 TTATATATTTATT-TTA
1 TTATTTATTTATTAATA
23319926 TTATTTATTTATTAATA
1 TTATTTATTTATTAATA
23319943 TTATTT
1 TTATTT
23319949 TTTTTTGGGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TTATTTATTTATTAATA
Found at i:23319946 original size:20 final size:20
Alignment explanation
Indices: 23319906--23319947 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
23319896 GTTTTTAATC
* *
23319906 TTATTTATATATTTATTTTA
1 TTATTTATATATTAATATTA
*
23319926 TTATTTATTTATTAATATTA
1 TTATTTATATATTAATATTA
23319946 TT
1 TT
23319948 TTTTTTTGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (20 bp):
TTATTTATATATTAATATTA
Found at i:23320110 original size:60 final size:57
Alignment explanation
Indices: 23320058--23320768 Score: 586
Period size: 60 Copynumber: 11.9 Consensus size: 57
23320048 AAATATATAC
* * * * * * * *
23320058 TTTAAAGAAAAGTTGAAAATATCAATTTTCCTTGAAGATCAAATTTCAAAAAAAAAAAAGAC
1 TTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTC-----AAAAAAATAT
** * * * * * *
23320120 TTTAACAAAAAATTGAAAGTATTAATTTTCCTTAAAGATCAAATTTTAAAAAAAATAT
1 TTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAAATTTCAAAAAAATAT
* * * * * *
23320178 ACTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCATA-TTAAAAAAAAAACC
1 --TTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCAAAAAAATA-T
* *
23320237 TTTAGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATATGAATTTCAAAAAAAGTATT
1 TTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATA-AAATTTCAAAAAAA-TA-T
* * * * *
23320297 TTTGAGAAAAAGTTGAAAGTATCGATTTTTTTTTTAAATAA-AAAAGTTCAAAAGAAAAATAT
1 TTTAAGGAAAAGTTGAAAGTATC-A-ATTTTTCTTAAA-AATAAAATTTC--AA-AAAAATAT
23320359 TTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAAATTTCAAAAAAAGTATT
1 TTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAAATTTCAAAAAAA-TA-T
* * *
23320419 TTTGAGGAAAAGTTGAAAGTATCGATTTTTCTTGAAAATAAAAATTTCAAAAAGAATATT
1 TTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAAATTTCAAAAA-AATA-T
* * * *
23320479 TTTGAGGAAAAGTAGAAAGTATCGATTTTTCTTGAAAATAAAAATTTCAAAAAAATATT
1 TTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAAATTTCAAAAAAATA-T
* * * * * *
23320538 TTTGAGGAAAAGTCGAAAATATCAATTTTCCTTAAAAAAAAAATTTCAAAAAGATATT
1 TTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCAAAAAAATA-T
* **
23320596 TTTAAGGAAAAGTCGAAAGTATCAATTTTT-TTTTAAATAAAATTTTCAAAATAAAAATAT
1 TTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAA-TTTC--AA-AAAAATAT
* * * **
23320656 TTTAAGG-AAAGTTAAAAGTATTAATTTTCCTTGCAAATAAAATTTTC-AAAAAATAT
1 TTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAA-TTTCAAAAAAATAT
* * * *
23320712 TTTGAGTAAAAGTTGAAAATATCAATTTTTCTTGAAAATAAAAATTTCGAAAGAAAA
1 TTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAAATTTC-AAA-AAAA
23320769 GTTGAAAGTA
Statistics
Matches: 548, Mismatches: 73, Indels: 58
0.81 0.11 0.09
Matches are distributed among these distances:
56 13 0.02
57 77 0.14
58 78 0.14
59 75 0.14
60 201 0.37
61 22 0.04
62 66 0.12
63 11 0.02
64 5 0.01
ACGTcount: A:0.49, C:0.06, G:0.11, T:0.34
Consensus pattern (57 bp):
TTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCAAAAAAATAT
Found at i:23320667 original size:117 final size:118
Alignment explanation
Indices: 23320064--23320768 Score: 636
Period size: 117 Copynumber: 5.9 Consensus size: 118
23320054 ATACTTTAAA
* * * ** * ** **
23320064 GAAAAGTTGAAAATATCAATTTTCCTTGAAGATCAAATTTCAAAAAAAAAAAAGACTTTAACAAA
1 GAAAAGTTGAAAGTATCAATTTTCCTTAAAAAAAAAATTTC---AAAAAAATA-TTTTTAAGGAA
* * * * * * * *
23320129 AAATTGAAAGTATTAATTTTCCTTAAAGAT-CAAATTTTAAAAAAAATATACTTTAAG
62 AAGTTGAAAGTATCAATTTTTCTTAAAAATAAAAATTTCAAAAAAAA-ATATTTTGAG
** * * * ** *
23320186 GAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCATA-TTAAAAAAAAAACCTTTAGGGAAAAGT
1 GAAAAGTTGAAAGTATCAATTTTCCTTAAAAAAAAAATTTCAAAAAAATATTTTTAAGGAAAAGT
** *
23320250 TGAAAGTATCAATTTTTCTTAAAAATATGAATTTC-AAAAAAAGTATTTTTGAG
66 TGAAAGTATCAATTTTTCTTAAAAATAAAAATTTCAAAAAAAAATA-TTTTGAG
* * ** * * *
23320303 AAAAAGTTGAAAGTATCGATTTTTTTTTTAAATAAAAAAGTTCAAAAGAAAAATATTTTAAGGAA
1 GAAAAGTTGAAAGTATC-A-ATTTTCCTTAAAAAAAAAATTTCAAAA-AAATAT-TTTTAAGGAA
*
23320368 AAGTTGAAAGTATCAATTTTTCTTAAAAATAAAAATTTC-AAAAAAAGTATTTTTGAG
62 AAGTTGAAAGTATCAATTTTTCTTAAAAATAAAAATTTCAAAAAAAAATA-TTTTGAG
* * * *
23320425 GAAAAGTTGAAAGTATCGATTTTTCTTGAAAATAAAAATTTCAAAAAGAATATTTTTGAGGAAAA
1 GAAAAGTTGAAAGTATCAATTTTCCTT-AAAAAAAAAATTTCAAAAA-AATATTTTTAAGGAAAA
* * * *
23320490 GTAGAAAGTATCGATTTTTCTTGAAAATAAAAATTTCAAAAAAATAT-TTTTGAG
64 GTTGAAAGTATCAATTTTTCTTAAAAATAAAAATTTCAAAAAAAAATATTTTGAG
* * *
23320544 GAAAAGTCGAAAATATCAATTTTCCTTAAAAAAAAAATTTCAAAAAGATATTTTTAAGGAAAAGT
1 GAAAAGTTGAAAGTATCAATTTTCCTTAAAAAAAAAATTTCAAAAAAATATTTTTAAGGAAAAGT
* ** * *
23320609 CGAAAGTATCAATTTTT-TTTTAAATAAAATTTTCAAAATAAAAATATTTTAAG
66 TGAAAGTATCAATTTTTCTTAAAAATAAAAATTTCAAAA-AAAAATATTTTGAG
* * * * * * *
23320662 G-AAAGTTAAAAGTATTAATTTTCCTTGCAAATAAAATTTTC-AAAAAATA-TTTTGAGTAAAAG
1 GAAAAGTTGAAAGTATCAATTTTCCTT-AAAAAAAAAATTTCAAAAAAATATTTTTAAGGAAAAG
* * * *
23320724 TTGAAAATATCAATTTTTCTTGAAAATAAAAATTTCGAAAGAAAA
65 TTGAAAGTATCAATTTTTCTTAAAAATAAAAATTTCAAAAAAAAA
23320769 GTTGAAAGTA
Statistics
Matches: 491, Mismatches: 78, Indels: 34
0.81 0.13 0.06
Matches are distributed among these distances:
116 51 0.10
117 143 0.29
118 51 0.10
119 42 0.09
120 59 0.12
121 33 0.07
122 112 0.23
ACGTcount: A:0.49, C:0.07, G:0.11, T:0.34
Consensus pattern (118 bp):
GAAAAGTTGAAAGTATCAATTTTCCTTAAAAAAAAAATTTCAAAAAAATATTTTTAAGGAAAAGT
TGAAAGTATCAATTTTTCTTAAAAATAAAAATTTCAAAAAAAAATATTTTGAG
Found at i:23320756 original size:103 final size:105
Alignment explanation
Indices: 23320663--23320874 Score: 338
Period size: 106 Copynumber: 2.0 Consensus size: 105
23320653 TATTTTAAGG
* * *
23320663 AAAGTTAAAAGTATTAATTTTCCTTGCAAATAAAATTTTC-AAAAAA-TATTTTGAGTAAAAGTT
1 AAAGTTAAAAGTATTAATTTTCCTTGAAAATAAAATTTTCAAAAAAAGCATTTTGAGGAAAAGTT
23320726 GAAAATATCAATTTTTCTTGAAAATAAAAATTTCGAAAGA
66 GAAAATATCAATTTTTCTTGAAAATAAAAATTTCGAAAGA
* *
23320766 AAAGTTGAAAGTATTAATTTTTCTTGAAAATAAAATTTTCAAAAAAAGGCATTTTGAGGAAAAGT
1 AAAGTTAAAAGTATTAATTTTCCTTGAAAATAAAATTTTCAAAAAAA-GCATTTTGAGGAAAAGT
* *
23320831 TGAAAATATTAATTTTTCTTGAAAATAAAAATTTCAAAAGA
65 TGAAAATATCAATTTTTCTTGAAAATAAAAATTTCGAAAGA
23320872 AAA
1 AAA
23320875 TGTGTTAAGA
Statistics
Matches: 99, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
103 37 0.37
104 6 0.06
106 56 0.57
ACGTcount: A:0.49, C:0.06, G:0.11, T:0.35
Consensus pattern (105 bp):
AAAGTTAAAAGTATTAATTTTCCTTGAAAATAAAATTTTCAAAAAAAGCATTTTGAGGAAAAGTT
GAAAATATCAATTTTTCTTGAAAATAAAAATTTCGAAAGA
Found at i:23320771 original size:46 final size:44
Alignment explanation
Indices: 23320719--23320813 Score: 145
Period size: 46 Copynumber: 2.1 Consensus size: 44
23320709 TATTTTGAGT
23320719 AAAAGTTGAAAATATCAATTTTTCTTGAAAATAAAAATTTCGAAA
1 AAAAGTTGAAAATATCAATTTTTCTTGAAAATAAAAATTTC-AAA
* * *
23320764 GAAAAGTTGAAAGTATTAATTTTTCTTGAAAATAAAATTTTCAAA
1 -AAAAGTTGAAAATATCAATTTTTCTTGAAAATAAAAATTTCAAA
23320809 AAAAG
1 AAAAG
23320814 GCATTTTGAG
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 5 0.11
45 3 0.07
46 38 0.83
ACGTcount: A:0.51, C:0.05, G:0.11, T:0.34
Consensus pattern (44 bp):
AAAAGTTGAAAATATCAATTTTTCTTGAAAATAAAAATTTCAAA
Found at i:23320832 original size:60 final size:60
Alignment explanation
Indices: 23320764--23320912 Score: 196
Period size: 60 Copynumber: 2.5 Consensus size: 60
23320754 AATTTCGAAA
* *
23320764 GAAAAGTTGAAAGTATTAATTTTTCTTGAAAATAAAATTTTCAAAA-AAAGGCAT-T-TTGAG
1 GAAAAGTTGAAAGTATTAATTTTTCTTGAAAATAAAAATTTCAAAAGAAA---ATGTGTTAAG
*
23320824 GAAAAGTTGAAAATATTAATTTTTCTTGAAAATAAAAATTTCAAAAGAAAATGTGTTAAG
1 GAAAAGTTGAAAGTATTAATTTTTCTTGAAAATAAAAATTTCAAAAGAAAATGTGTTAAG
* *
23320884 AAAAAGTTGAAAGTATCAATTTTTTCTTG
1 GAAAAGTTGAAAGTATTAA-TTTTTCTTG
23320913 TATAAAGGCA
Statistics
Matches: 79, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
58 2 0.03
59 1 0.01
60 64 0.81
61 12 0.15
ACGTcount: A:0.46, C:0.05, G:0.14, T:0.36
Consensus pattern (60 bp):
GAAAAGTTGAAAGTATTAATTTTTCTTGAAAATAAAAATTTCAAAAGAAAATGTGTTAAG
Found at i:23320843 original size:163 final size:166
Alignment explanation
Indices: 23320602--23320912 Score: 418
Period size: 163 Copynumber: 1.9 Consensus size: 166
23320592 TATTTTTAAG
** *
23320602 GAAAAGTCGAAAGTATCAATTTTTTTTTAAATAAAATTTTCAAAATAAAAATATTTTAAGGAAAG
1 GAAAAGTCGAAAGTATCAATTTTTTTGAAAATAAAATTTTCAAAATAAAAACATTTTAAGGAAAG
* * * * *
23320667 TTAAAAGTATTAATTTTCCTTGCAAATAAAATTTTCAAAA-AATAT-T-TTGAGTAAAAGTTGAA
66 TTAAAAGTATTAATTTTCCTTGAAAATAAAAATTTCAAAAGAAAATGTGTTAAGAAAAAGTTGAA
23320729 AATATCAA-TTTTTCTTGAAAATAAAAATTTCGAAA
131 AATATCAATTTTTTCTTGAAAATAAAAATTTCGAAA
* * ** *
23320764 GAAAAGTTGAAAGTATTAATTTTTCTTGAAAATAAAATTTTCAAAA-AAAGGCATTTTGAGGAAA
1 GAAAAGTCGAAAGTATCAATTTTT-TTGAAAATAAAATTTTCAAAATAAAAACATTTTAAGG-AA
*
23320828 AGTTGAAAA-TATTAATTTTTCTTGAAAATAAAAATTTCAAAAGAAAATGTGTTAAGAAAAAGTT
64 AGTT-AAAAGTATTAATTTTCCTTGAAAATAAAAATTTCAAAAGAAAATGTGTTAAGAAAAAGTT
*
23320892 GAAAGTATCAATTTTTTCTTG
128 GAAAATATCAATTTTTTCTTG
23320913 TATAAAGGCA
Statistics
Matches: 127, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
162 33 0.26
163 55 0.43
164 8 0.06
165 1 0.01
166 21 0.17
167 9 0.07
ACGTcount: A:0.47, C:0.05, G:0.12, T:0.36
Consensus pattern (166 bp):
GAAAAGTCGAAAGTATCAATTTTTTTGAAAATAAAATTTTCAAAATAAAAACATTTTAAGGAAAG
TTAAAAGTATTAATTTTCCTTGAAAATAAAAATTTCAAAAGAAAATGTGTTAAGAAAAAGTTGAA
AATATCAATTTTTTCTTGAAAATAAAAATTTCGAAA
Found at i:23332573 original size:85 final size:84
Alignment explanation
Indices: 23332476--23333352 Score: 641
Period size: 85 Copynumber: 10.3 Consensus size: 84
23332466 CTTCTTCGAT
* * * * *
23332476 TTAGTCCAAGTTACTTATTTCAAACTTTGGTTTAGCTCAGGTCATTTCATTTCGGATTTCGACCT
1 TTAGTCTAAGTTACTTATTTCAGACTTTGGTTCAGCTCAGGTCATTTTATTTTGGATTTCGACCT
23332541 ATGCTAGATCTTTTTTCGGC
66 ATGCTAGATCTTTTTT-GGC
* * * * ** *
23332561 TTAGTCTAAGTTATTTATTTTAGAATTTAGTTCAATTCATGTCATTTTATTTTCAGG-TTTCGAC
1 TTAGTCTAAGTTACTTATTTCAGACTTTGGTTCAGCTCAGGTCATTTTATTTT--GGATTTCGAC
* * *
23332625 CTATGCTAAATCCTTATTCGGC
64 CTATGCTAGAT-CTTTTTTGGC
* * * * *
23332647 TTAGTCTAAGTTA-TTCTTTTCAGACTTTGGTTCCATCT-AGGTCATTTTGTTTTGGATTTTGGC
1 TTAGTCTAAGTTACTT-ATTTCAGACTTTGGTT-CAGCTCAGGTCATTTTATTTTGGATTTCGAC
*
23332710 CTATGCTAGATCTTTTTTTAGC
64 CTATGCTAGATC-TTTTTTGGC
* * * * *
23332732 TTAGTCCAAGTTACTTATTTCAGATTTTGGTTCAG-TCCAGGTCATTTTATTTTAGATTTTGGCC
1 TTAGTCTAAGTTACTTATTTCAGACTTTGGTTCAGCT-CAGGTCATTTTATTTTGGATTTCGACC
*
23332796 TATGTTAGATCTTTCTTTGGC
65 TATGCTAGATCTTT-TTTGGC
* ** * * * * *
23332817 TTAGTCTAAGTTACTTATTTTAGA--TTGCGATTTTGCCCAGGTCATTTCATTTTTGATTTTGGC
1 TTAGTCTAAGTTACTTATTTCAGACTTTG-G-TTCAGCTCAGGTCATTTTATTTTGGATTTCGAC
* * *
23332880 TTATGCCAGATCTTCTTTTGAC
64 CTATGCTAGATCTT-TTTTGGC
* * * * * * ** *
23332902 TTAGTCCAAGTTATTTATTTTAGACTTCGATTCA-ATCCACATTATTTTATTTTTGGATTTCGAC
1 TTAGTCTAAGTTACTTATTTCAGACTTTGGTTCAGCT-CAGGTCATTTTA-TTTTGGATTTCGAC
* * *
23332966 TTATGCCAGATCTTTCTTTGAC
64 CTATGCTAGATCTTT-TTTGGC
* * * * * * *
23332988 TTAGTCTAAGTTATTTTTTTTAGACTTTGATTCCATC-CAGGTTATTTTGTTTTGGATTTCGACC
1 TTAGTCTAAGTTACTTATTTCAGACTTTGGTT-CAGCTCAGGTCATTTTATTTTGGATTTCGACC
* **
23333052 TATGCTAGATCTTCTTTAAC
65 TATGCTAGATCTTTTTTGGC
* ** **
23333072 TTAGTCTAAGTTACTTATTTCAAACTTCAGTTCAG-TCTAGGTCATTTGGTTTTGGATTTC-AGC
1 TTAGTCTAAGTTACTTATTTCAGACTTTGGTTCAGCTC-AGGTCATTTTATTTTGGATTTCGA-C
* * *
23333135 CTATGCCAGATATTTCTTTGGT
64 CTATGCTAGATCTTT-TTTGGC
* * * * * * * * *
23333157 TTAGTCTAAGTTATTTTTTTTAAGACTTCGATTCCATCT-AGGTCATTTTGTTTTGGGTTTTGAC
1 TTAGTCTAAGTTA-CTTATTTCAGACTTTGGTT-CAGCTCAGGTCATTTTATTTTGGATTTCGAC
23333221 CTATGCTAGATCTTTCTTTGGC
64 CTATGCTAGATCTTT-TTTGGC
* * * * * *
23333243 TTAGT-TCAAGTTACTTATTTCAGACTTTAGTTCAGCGCAGGTCATTTTGTTTTGGGTTTTGGCC
1 TTAGTCT-AAGTTACTTATTTCAGACTTTGGTTCAGCTCAGGTCATTTTATTTTGGATTTCGACC
* *
23333307 TATG--ATATCCTTTTTAGG-
65 TATGCTAGAT-CTTTTTTGGC
* *
23333325 TTCAGCCTAAGTTATTTATTTCAGACTT
1 TT-AGTCTAAGTTACTTATTTCAGACTT
23333353 CGATTCAATC
Statistics
Matches: 641, Mismatches: 116, Indels: 72
0.77 0.14 0.09
Matches are distributed among these distances:
82 2 0.00
83 36 0.06
84 80 0.12
85 312 0.49
86 193 0.30
87 17 0.03
88 1 0.00
ACGTcount: A:0.20, C:0.16, G:0.16, T:0.48
Consensus pattern (84 bp):
TTAGTCTAAGTTACTTATTTCAGACTTTGGTTCAGCTCAGGTCATTTTATTTTGGATTTCGACCT
ATGCTAGATCTTTTTTGGC
Found at i:23332676 original size:171 final size:170
Alignment explanation
Indices: 23332387--23333269 Score: 655
Period size: 171 Copynumber: 5.2 Consensus size: 170
23332377 GATGTATTAC
* * * *
23332387 AGCTTAGTCCAAGTTGTTTATTTTAGACTTCGTTTCAATCCAAGTCATTTTGTTTTTGGGTTTC-
1 AGCTTAGTCCAAGTTATTTATTTTAGACTTCGATTCAATCCAAGTCATTTT-ATTTTAGGTTTCG
* * * * * *
23332451 AGCCTATGCCGAATCCTTCTTCGATTTAGTCCAAGTTACTTATTTCAAACTTTGGTT-TAGCTCA
65 A-CCTATGCCAAATCCTTCTTCGACTTAGTCTAAGTTACTTTTTTCAGACTTTGGTTCCAGCTCA
*
23332515 GGTCATTTCATTTCGGATTTCGACCTATGCTAGATCTTTTTT
129 GGTCATTTCATTTTGGATTTCGACCTATGCTAGATCTTTTTT
* * * * * *
23332557 CGGCTTAGTCTAAGTTATTTATTTTAGAATT-TAGTTCAATTCATGTCATTTTATTTTCAGGTTT
1 -AGCTTAGTCCAAGTTATTTATTTTAGACTTCGA-TTCAATCCAAGTCATTTTATTTT-AGGTTT
* * * *
23332621 CGACCTATGCTAAATCCTTATTCGGCTTAGTCTAAGTTA-TTCTTTTCAGACTTTGGTTCCATCT
63 CGACCTATGCCAAATCCTTCTTCGACTTAGTCTAAGTTACTT-TTTTCAGACTTTGGTTCCAGCT
** * *
23332685 -AGGTCATTTTGTTTTGGATTTTGGCCTATGCTAGATCTTTTTTT
127 CAGGTCATTTCATTTTGGATTTCGACCTATGCTAGATC-TTTTTT
* * * * * * * * * *
23332729 AGCTTAGTCCAAGTTACTTATTTCAGATTTTGGTTCAGTCCAGGTCATTTTATTTTAGATTTTGG
1 AGCTTAGTCCAAGTTATTTATTTTAGACTTCGATTCAATCCAAGTCATTTTATTTTAGGTTTCGA
** * * * * ** *
23332794 CCTATGTTAGATCTTTCTTTGGCTTAGTCTAAGTTACTTATTTT-AGA--TTGCGATT-TTGCCC
66 CCTATGCCAAATCCTTCTTCGACTTAGTCTAAGTTACTT-TTTTCAGACTTTG-G-TTCCAGCTC
* * * * *
23332855 AGGTCATTTCATTTTTGATTTTGGCTTATGCCAGATCTTCTTTT
128 AGGTCATTTCATTTTGGATTTCGACCTATGCTAGATCTT-TTTT
* *
23332899 -GACTTAGTCCAAGTTATTTATTTTAGACTTCGATTCAATCCACA-TTATTTTATTTTTGGATTT
1 AG-CTTAGTCCAAGTTATTTATTTTAGACTTCGATTCAATCCA-AGTCATTTTATTTTAGG-TTT
* * * * * * * *
23332962 CGACTTATGCCAGATCTTTCTTTGACTTAGTCTAAGTTATTTTTTTTAGACTTTGATTCCATC-C
63 CGACCTATGCCAAATCCTTCTTCGACTTAGTCTAAGTTACTTTTTTCAGACTTTGGTTCCAGCTC
* ** *
23333026 AGGTTATTTTGTTTTGGATTTCGACCTATGCTAGATCTTCTTT
128 AGGTCATTTCATTTTGGATTTCGACCTATGCTAGATCTTTTTT
* * * * * * * * **
23333069 AACTTAGTCTAAGTTACTTATTTCAAACTTC-AGTTCAGTCTAGGTCATTTGGTTTT-GGATTTC
1 AGCTTAGTCCAAGTTATTTATTTTAGACTTCGA-TTCAATCCAAGTCATTTTATTTTAGG-TTTC
* ** * ** * * * * *
23333132 -AGCCTATGCCAGATATTTCTTTGGTTTAGTCTAAGTTATTTTTTTTAAGACTTCGATTCCATCT
64 GA-CCTATGCCAAATCCTTCTTCGACTTAGTCTAAGTTA-CTTTTTTCAGACTTTGGTTCCAGCT
** * *
23333196 -AGGTCATTTTGTTTTGGGTTTTGACCTATGCTAGATCTTTCTTT
127 CAGGTCATTTCATTTTGGATTTCGACCTATGCTAGATCTTT-TTT
* * * *
23333240 GGCTTAGTTCAAGTTACTTATTTCAGACTT
1 AGCTTAGTCCAAGTTATTTATTTTAGACTT
23333270 TAGTTCAGCG
Statistics
Matches: 577, Mismatches: 109, Indels: 52
0.78 0.15 0.07
Matches are distributed among these distances:
168 4 0.01
169 45 0.08
170 236 0.41
171 278 0.48
172 11 0.02
173 3 0.01
ACGTcount: A:0.20, C:0.17, G:0.16, T:0.47
Consensus pattern (170 bp):
AGCTTAGTCCAAGTTATTTATTTTAGACTTCGATTCAATCCAAGTCATTTTATTTTAGGTTTCGA
CCTATGCCAAATCCTTCTTCGACTTAGTCTAAGTTACTTTTTTCAGACTTTGGTTCCAGCTCAGG
TCATTTCATTTTGGATTTCGACCTATGCTAGATCTTTTTT
Found at i:23333202 original size:341 final size:340
Alignment explanation
Indices: 23332513--23333424 Score: 901
Period size: 341 Copynumber: 2.7 Consensus size: 340
23332503 TGGTTTAGCT
* * *
23332513 CAGGTCATTTCATTTCGGATTTCGACCTATGCTAGATCTTTTTTCGGCTTAGTCTAAGTTATTTA
1 CAGGTCATTTCATTTTGGATTTTGACCTATGCTAGATCTTTTTT-GGCTTAGTCCAAGTTATTTA
* * * ** *
23332578 TTTTAGAATTTAGTTCAATTCATGTCATTTTATTTTCAGGTTTCGACCTATGCTAAATCCTTATT
65 TTTTAGACTTGAGTTCAATCCACATCATTTTATTTTCAGGTTTCGACCTATGCCAAATCCTTATT
* * * *
23332643 CGGCTTAGTCTAAGTTATTCTTTTCAGACTTTGGTTCCATCTAGGTCATTTTGTTTTGGATTTTG
130 CGACTTAGTCTAAGTTATTCTTTTCAGACTTTGATTCCATCCAGGTCATTTTGTTTTGGATTTCG
* * * * * **
23332708 GCCTATGCTAGATCTTTTTTTAGCTTAGTCCAAGTTACTTATTTCAGATTTTGGTTCAGTCCAGG
195 ACCTATGCTAGATCTTTCTTTAACTTAGTCCAAGTTACTTATTTCAAACTTCAGTTCAGTCCAGG
* ** ** *
23332773 TCATTTTATTTTAGATTTTGGCCTATGTTAGATCTTTCTTTGGCTTAGTCTAAGTTACTTATTTT
260 TCATTTGATTTTAGATTTCAGCCTATGCCAGATATTTCTTTGGCTTAGTCTAAGTTACTTATTTT
***
23332838 AGATTGCGATTTTGCC
325 AGATTGCGATTCCACC
* * * * *
23332854 CAGGTCATTTCATTTTTGATTTTGGCTTATGCCAGATCTTCTTTTGACTTAGTCCAAGTTATTTA
1 CAGGTCATTTCATTTTGGATTTTGACCTATGCTAGATCTT-TTTTGGCTTAGTCCAAGTTATTTA
* * * * * *
23332919 TTTTAGACTTCGA-TTCAATCCACATTATTTTATTTT-TGGATTTCGACTTATGCCAGATCTTTC
65 TTTTAGACTT-GAGTTCAATCCACATCATTTTATTTTCAGG-TTTCGACCTATGCCAAATCCTTA
* * * *
23332982 TTTGACTTAGTCTAAGTTATTTTTTTTAGACTTTGATTCCATCCAGGTTATTTTGTTTTGGATTT
128 TTCGACTTAGTCTAAGTTATTCTTTTCAGACTTTGATTCCATCCAGGTCATTTTGTTTTGGATTT
* *
23333047 CGACCTATGCTAGATC-TTCTTTAACTTAGTCTAAGTTACTTATTTCAAACTTCAGTTCAGTCTA
193 CGACCTATGCTAGATCTTTCTTTAACTTAGTCCAAGTTACTTATTTCAAACTTCAGTTCAGTCCA
* * * * *
23333111 GGTCATTTGGTTTTGGATTTCAGCCTATGCCAGATATTTCTTTGGTTTAGTCTAAGTTATTTTTT
258 GGTCATTTGATTTTAGATTTCAGCCTATGCCAGATATTTCTTTGGCTTAGTCTAAGTTACTTATT
*
23333176 TTAAGACTT-CGATTCCATC
323 TT-AGA-TTGCGATTCCACC
* ** * * *
23333195 TAGGTCATTTTGTTTTGGGTTTTGACCTATGCTAGATCTTTCTTTGGCTTAGTTCAAGTTACTTA
1 CAGGTCATTTCATTTTGGATTTTGACCTATGCTAGATCTTT-TTTGGCTTAGTCCAAGTTATTTA
* * * ** * * * * * *
23333260 TTTCAGACTTTAGTTC-AGCGCAGGTCATTTTGTTTT-GGGTTTTGGCCTATG--ATATCCTTTT
65 TTTTAGACTTGAGTTCAATC-CACATCATTTTATTTTCAGGTTTCGACCTATGCCAAATCCTTAT
* * * * * * * *
23333321 TAG-GTTCAGCCTAAGTTATT-TATTTCAGACTTCGATTCAATCTAGGTCGTTATGGTTTTGGAT
129 TCGACTT-AGTCTAAGTTATTCT-TTTCAGACTTTGATTCCATCCAGGTCATT-TTGTTTTGGAT
* * * * *
23333384 TTCGACTTGTGCT-GAATCTTTTTTTGACTTGGTCCAAGTTA
191 TTCGACCTATGCTAG-ATCTTTCTTTAACTTAGTCCAAGTTA
23333425 TTCATCTCGA
Statistics
Matches: 465, Mismatches: 93, Indels: 27
0.79 0.16 0.05
Matches are distributed among these distances:
337 3 0.01
338 45 0.10
339 24 0.05
340 129 0.28
341 257 0.55
342 7 0.02
ACGTcount: A:0.20, C:0.16, G:0.17, T:0.47
Consensus pattern (340 bp):
CAGGTCATTTCATTTTGGATTTTGACCTATGCTAGATCTTTTTTGGCTTAGTCCAAGTTATTTAT
TTTAGACTTGAGTTCAATCCACATCATTTTATTTTCAGGTTTCGACCTATGCCAAATCCTTATTC
GACTTAGTCTAAGTTATTCTTTTCAGACTTTGATTCCATCCAGGTCATTTTGTTTTGGATTTCGA
CCTATGCTAGATCTTTCTTTAACTTAGTCCAAGTTACTTATTTCAAACTTCAGTTCAGTCCAGGT
CATTTGATTTTAGATTTCAGCCTATGCCAGATATTTCTTTGGCTTAGTCTAAGTTACTTATTTTA
GATTGCGATTCCACC
Found at i:23333425 original size:255 final size:250
Alignment explanation
Indices: 23332389--23333426 Score: 822
Period size: 255 Copynumber: 4.1 Consensus size: 250
23332379 TGTATTACAG
* * * * * * *
23332389 CTTAGTCCAAGTTGTTTATTTTAGACTTCGTTTCAATCCAAGTCATTTTGTTTTTGG-GTTTCAG
1 CTTAGTCCAAGTTATTTATTTTAGACTTCGATTCCATCTAGGTCATTTTG-TTTTGGATTTTGA-
* * * ** * * *
23332453 CCTATGC-CGAATCCTTCTTCGATTTAGTCCAAGTTACTTATTTCAAACTTTGGTTTAGCTCAGG
64 CCTATGCTAG-ATCTTTCTTTGGCTTAGTTCAAGTTACTTATTTCAGACTTT-GTTCAGC-CAGG
** * * * * * *
23332517 TCATTTCATTTCGGATTTCGACCTATGCTAGATCTTTTTTCGGCTTAGTCTAAGTTATTTATTTT
126 TCATTTTGTTTTGGATTTTGGCCTATG-TAGATC-TTTTTAGG-TTAGTCTAAGTTACTTATTTC
* * * * ** * * * * * *
23332582 AGAATT-TAGTTCAAT-TCATGTCATTTTATTTTCAGG-TTTCGACCTATGCTAAATCCTTATTC
188 AGACTTCGA-TTCAGTCT-AGGTCATTTGGTTTT--GGATTTCGACTTATGCCAGATCTTTTTTT
*
23332644 GG
249 GA
* * * * *
23332646 CTTAGTCTAAGTTATTCT-TTTCAGACTTTGGTTCCATCTAGGTCATTTTGTTTTGGATTTTGGC
1 CTTAGTCCAAGTTATT-TATTTTAGACTTCGATTCCATCTAGGTCATTTTGTTTTGGATTTTGAC
* * * *
23332710 CTATGCTAGATCTTTTTTTAGCTTAGTCCAAGTTACTTATTTCAGATTTTGGTTCAGTCCAGGTC
65 CTATGCTAGATCTTTCTTTGGCTTAGTTCAAGTTACTTATTTCAGACTTT-GTTCAG-CCAGGTC
* * * *
23332775 ATTTTATTTTAGATTTTGGCCTATGTTAGATCTTTCTTTGGCTTAGTCTAAGTTACTTATTTTAG
128 ATTTTGTTTTGGATTTTGGCCTATG-TAGATCTTT-TTAGG-TTAGTCTAAGTTACTTATTTCAG
** * * ** * * * *
23332840 A-TTGCGATTTTGCCCAGGTCATTTCATTTTTGATTTTGGCTTATGCCAGATCTTCTTTTGA
190 ACTT-CGATTCAGTCTAGGTCATTTGGTTTTGGATTTCGACTTATGCCAGATCTTTTTTTGA
* * ** * * *
23332901 CTTAGTCCAAGTTATTTATTTTAGACTTCGATTCAATCCACATTATTTTATTTTTGGATTTCGAC
1 CTTAGTCCAAGTTATTTATTTTAGACTTCGATTCCATCTAGGTCATTTT-GTTTTGGATTTTGAC
* * * * * * *
23332966 TTATGCCAGATCTTTCTTTGACTTAG-TCTAAGTTATTTTTTTTAGACTTTGATTCCATCCAGGT
65 CTATGCTAGATCTTTCTTTGGCTTAGTTC-AAGTTACTTATTTCAGACTTTG-TT-CAGCCAGGT
* * * ** *
23333030 TATTTTGTTTTGGATTTCGACCTATGCTAGATCTTCTTTAACTTAGTCTAAGTTACTTATTTCAA
127 CATTTTGTTTTGGATTTTGGCCTATG-TAGATCTT-TTTAGGTTAGTCTAAGTTACTTATTTCAG
* * * *
23333095 ACTTC-AGTTCAGTCTAGGTCATTTGGTTTTGGATTTC-AGCCTATGCCAGATATTTCTTTGG
190 ACTTCGA-TTCAGTCTAGGTCATTTGGTTTTGGATTTCGA-CTTATGCCAGATCTTTTTTTGA
* * * *
23333156 TTTAGTCTAAGTTATTTTTTTTAAGACTTCGATTCCATCTAGGTCATTTTGTTTTGGGTTTTGAC
1 CTTAGTCCAAGTTATTTATTTT-AGACTTCGATTCCATCTAGGTCATTTTGTTTTGGATTTTGAC
23333221 CTATGCTAGATCTTTCTTTGGCTTAGTTCAAGTTACTTATTTCAGACTTTAGTTCAGCGCAGGTC
65 CTATGCTAGATCTTTCTTTGGCTTAGTTCAAGTTACTTATTTCAGACTTT-GTTCAGC-CAGGTC
* * * *
23333286 ATTTTGTTTTGGGTTTTGGCCTATG-ATATCCTTTTTAGGTTCAGCCTAAGTTATTTATTTCAGA
128 ATTTTGTTTTGGATTTTGGCCTATGTAGAT-CTTTTTAGGTT-AGTCTAAGTTACTTATTTCAGA
* * * *
23333350 CTTCGATTCAATCTAGGTCGTTATGGTTTTGGATTTCGACTTGTG-CTGAATCTTTTTTTGA
191 CTTCGATTCAGTCTAGGTCATT-TGGTTTTGGATTTCGACTTATGCCAG-ATCTTTTTTTGA
*
23333411 CTTGGTCCAAGTTATT
1 CTTAGTCCAAGTTATT
23333427 CATCTCGAAT
Statistics
Matches: 618, Mismatches: 135, Indels: 58
0.76 0.17 0.07
Matches are distributed among these distances:
253 9 0.01
254 48 0.08
255 267 0.43
256 244 0.39
257 49 0.08
258 1 0.00
ACGTcount: A:0.20, C:0.16, G:0.16, T:0.47
Consensus pattern (250 bp):
CTTAGTCCAAGTTATTTATTTTAGACTTCGATTCCATCTAGGTCATTTTGTTTTGGATTTTGACC
TATGCTAGATCTTTCTTTGGCTTAGTTCAAGTTACTTATTTCAGACTTTGTTCAGCCAGGTCATT
TTGTTTTGGATTTTGGCCTATGTAGATCTTTTTAGGTTAGTCTAAGTTACTTATTTCAGACTTCG
ATTCAGTCTAGGTCATTTGGTTTTGGATTTCGACTTATGCCAGATCTTTTTTTGA
Found at i:23334711 original size:63 final size:59
Alignment explanation
Indices: 23334617--23334903 Score: 296
Period size: 63 Copynumber: 4.8 Consensus size: 59
23334607 TTTTAGAGTA
* * *
23334617 AAATTTTTAAAAAATATACTTTAAGAAAAAGTTGACAGTATCAATTTTTTTTAAAGATC
1 AAATTTTAAAAAAATATACTTTAAGAAAAAGTTGAAAGTATCAATTTTTTTTGAAGATC
* * *
23334676 AAATTTTAAATATATATATATACTTTAAGGAAAAGTTGAAAGTATTAATTTTTCTTGAAGATC
1 AAATTTTAAA-A-A-A-ATATACTTTAAGAAAAAGTTGAAAGTATCAATTTTTTTTGAAGATC
* *
23334739 AAA--TTAAAAAAA-ATGCTTTAAGAAAAAGTTGAAAGTATCAATTTTCTTTGAAGATC
1 AAATTTTAAAAAAATATACTTTAAGAAAAAGTTGAAAGTATCAATTTTTTTTGAAGATC
* * * * * **
23334795 AAATTTTAAAAAAAAATACTTTAGGGAAAAATTTAAAAGTATTAATTTTTCTTAAAAGTAT-
1 AAATTTTAAAAAAATATACTTTA-AGAAAAAGTTGAAAGTATCAATTTTT-TTTGAAG-ATC
* * * *
23334856 GAATTTCAAAAAAAGTAT-TTTTAAGGAAAAGTTGAAAGTATCAATTTT
1 AAATTTTAAAAAAA-TATACTTTAAGAAAAAGTTGAAAGTATCAATTTT
23334904 CCTAGAAAAT
Statistics
Matches: 189, Mismatches: 28, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
56 42 0.22
57 1 0.01
58 10 0.05
59 17 0.09
60 43 0.23
61 27 0.14
62 5 0.03
63 44 0.23
ACGTcount: A:0.47, C:0.05, G:0.11, T:0.37
Consensus pattern (59 bp):
AAATTTTAAAAAAATATACTTTAAGAAAAAGTTGAAAGTATCAATTTTTTTTGAAGATC
Found at i:23334766 original size:56 final size:56
Alignment explanation
Indices: 23334698--23334903 Score: 200
Period size: 60 Copynumber: 3.5 Consensus size: 56
23334688 TATATATATA
* *
23334698 CTTTAAGGAAAAGTTGAAAGTATTAATTTTTCTTGAAGATCAAATT-AAAAAAAAT
1 CTTTAAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAGATCAAATTAAAAAAAAAT
23334753 GCTTTAAGAAAAAGTTGAAAGTATCAA-TTTTCTTTGAAGATCAAATTTTAAAAAAAAAT
1 -CTTTAAGAAAAAGTTGAAAGTATCAATTTTTC-TTGAAGATCAAA--TTAAAAAAAAAT
* * * * * * * *
23334812 ACTTTAGGGAAAAATTTAAAAGTATTAATTTTTCTTAAAAGTATGAATTTCAAAAAAAGTAT
1 -CTTTA-AGAAAAAGTTGAAAGTATCAATTTTTCTT-GAAG-ATCAAATT-AAAAAAA-AAT
* *
23334874 TTTTAAGGAAAAGTTGAAAGTATCAATTTT
1 CTTTAAGAAAAAGTTGAAAGTATCAATTTT
23334904 CCTAGAAAAT
Statistics
Matches: 123, Mismatches: 17, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
55 5 0.04
56 36 0.29
58 2 0.02
59 14 0.11
60 41 0.33
61 19 0.15
62 6 0.05
ACGTcount: A:0.46, C:0.05, G:0.13, T:0.36
Consensus pattern (56 bp):
CTTTAAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAGATCAAATTAAAAAAAAAT
Found at i:23334867 original size:119 final size:118
Alignment explanation
Indices: 23334623--23334904 Score: 347
Period size: 119 Copynumber: 2.4 Consensus size: 118
23334613 AGTAAAATTT
* * *
23334623 TTAAAAAATATACTTTAAGAAAAAGTTGACAGTATCAATTTTTTTTAAAGATCAAATTTTAAATA
1 TTAAAAAAAAT-CTTTAAGAAAAAGTTGAAAGTATCAATTTTCTTTAAAGATCAAATTTTAAATA
* * *
23334688 TATATATATACTTTAAGGAAAAGTTGAAAGTATTAATTTTTCTTGAAGATCAAA
65 TATATAAATACTTTAAGGAAAAGTTAAAAGTATTAATTTTTCTTAAAGATCAAA
*
23334742 TTAAAAAAAATGCTTTAAGAAAAAGTTGAAAGTATCAATTTTCTTTGAAGATCAAATTTTAAA-A
1 TTAAAAAAAAT-CTTTAAGAAAAAGTTGAAAGTATCAATTTTCTTTAAAGATCAAATTTTAAATA
* * * *
23334806 -A-A-AAATACTTTAGGGAAAAATTTAAAAGTATTAATTTTTCTTAAAAGTATGAAT
65 TATATAAATACTTTAAGG-AAAAGTTAAAAGTATTAATTTTTCTT-AAAG-ATCAAA
* *
23334860 TTCAAAAAAAGTATTTTTAAGGAAAAGTTGAAAGTATCAATTTTC
1 TT-AAAAAAA--ATCTTTAAGAAAAAGTTGAAAGTATCAATTTTC
23334905 CTAGAAAATA
Statistics
Matches: 143, Mismatches: 14, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
115 11 0.08
116 25 0.17
117 4 0.03
118 7 0.05
119 65 0.45
120 29 0.20
121 2 0.01
ACGTcount: A:0.46, C:0.06, G:0.11, T:0.37
Consensus pattern (118 bp):
TTAAAAAAAATCTTTAAGAAAAAGTTGAAAGTATCAATTTTCTTTAAAGATCAAATTTTAAATAT
ATATAAATACTTTAAGGAAAAGTTAAAAGTATTAATTTTTCTTAAAGATCAAA
Found at i:23334921 original size:60 final size:59
Alignment explanation
Indices: 23334616--23334926 Score: 188
Period size: 60 Copynumber: 5.2 Consensus size: 59
23334606 TTTTTAGAGT
** * * ** *
23334616 AAAATTTTTAAAAAATATACTTTAAGAAAAAGTTGACAGTATCAATTTTTTTTA-AAGAT-
1 AAAATTTCAAAAAAATAT-CTTTAAGGAAAAGTTGAAAGTATCAA-TTTTCCTAGAAAATA
* * * * * *
23334675 CAAATTTTAAATATATATATATACTTTAAGGAAAAGTTGAAAGTATTAATTTTTCTTGAAGAT-
1 AAAATTTCAAA-A-A-A-ATAT-CTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTAGAAAATA
* * * * *
23334738 CAAA-TT-AAAAAAA-ATGCTTTAAGAAAAAGTTGAAAGTATCAATTTTCTTTGAAGAT-
1 AAAATTTCAAAAAAATAT-CTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTAGAAAATA
* * * * * * * * *
23334794 CAAATTTTAAAAAAAAATACTTTAGGGAAAAATTTAAAAGTATTAATTTTTCTTA-AAAGTA
1 AAAATTTCAAAAAAATAT-CTTTAAGG-AAAAGTTGAAAGTATCAA-TTTTCCTAGAAAATA
** *
23334855 TGAATTTCAAAAAAAGTATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTAGAAAATA
1 AAAATTTCAAAAAAA-TATCTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTAGAAAATA
23334915 AAAATTTCAAAA
1 AAAATTTCAAAA
23334927 GAGGTGAAAA
Statistics
Matches: 205, Mismatches: 34, Indels: 25
0.78 0.13 0.09
Matches are distributed among these distances:
56 42 0.20
57 3 0.01
58 8 0.04
59 25 0.12
60 50 0.24
61 29 0.14
62 11 0.05
63 37 0.18
ACGTcount: A:0.48, C:0.06, G:0.10, T:0.36
Consensus pattern (59 bp):
AAAATTTCAAAAAAATATCTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTAGAAAATA
Found at i:23335158 original size:58 final size:59
Alignment explanation
Indices: 23334931--23335171 Score: 299
Period size: 59 Copynumber: 4.1 Consensus size: 59
23334921 TCAAAAGAGG
* ** * * *
23334931 TGAAAATAAAAATTTTGAAAAAGGCATTTTTGAGGAAAAGTTGAAAGTATCTATTTTCCT
1 TGAAAATAAAAA-TTTCAAAAAGGGTTTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCT
*
23334991 TGAAAATAAAAATTTCAAAAAGGGTTTTTTGA-AGAAAAGTTGAAAGTATCTATTTTTCT
1 TGAAAATAAAAATTTCAAAAAGGGTTTTTTGAGA-AAAAGTTGAAAGTATCAATTTTTCT
* *
23335050 TGAAAATAAAAATTTCAAAAAGGGTTTTTTGAGGAAAAGTCGAAAGTATCAATTTTTCT
1 TGAAAATAAAAATTTCAAAAAGGGTTTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCT
* * ** * * *
23335109 TGAAAAGAAAATTTTCAAAAA-AATATTTTGAGAAAAAGTTGAAAATATCAA-TTTTCC
1 TGAAAATAAAAATTTCAAAAAGGGTTTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCT
23335166 TGAAAA
1 TGAAAA
23335172 AGTGGAAAGT
Statistics
Matches: 162, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
57 11 0.07
58 24 0.15
59 115 0.71
60 12 0.07
ACGTcount: A:0.45, C:0.06, G:0.15, T:0.34
Consensus pattern (59 bp):
TGAAAATAAAAATTTCAAAAAGGGTTTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCT
Found at i:23335162 original size:26 final size:27
Alignment explanation
Indices: 23335139--23335190 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
23335129 AAATATTTTG
*
23335139 AGAAAAAGTTGAAAATATCAATTTTCC
1 AGAAAAAGTGGAAAATATCAATTTTCC
* *
23335166 TGAAAAAGTGGAAAGTATCAATTTT
1 AGAAAAAGTGGAAAATATCAATTTT
23335191 TCTTGACAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.46, C:0.08, G:0.15, T:0.31
Consensus pattern (27 bp):
AGAAAAAGTGGAAAATATCAATTTTCC
Found at i:23335182 original size:85 final size:87
Alignment explanation
Indices: 23335084--23335251 Score: 243
Period size: 85 Copynumber: 1.9 Consensus size: 87
23335074 TTTTTTGAGG
* *
23335084 AAAAGTCGAAAGTATCAATTTTTCTTGAAAAGAAAATTTTC-AA-AAAAATATTTTGAGAAAAAG
1 AAAAGTCGAAAGTATCAATTTTTCTTGAAAAGAAAAATTTCAAATAAAAATATTTTAAGAAAAAG
23335147 TTGAAAA-TATCAATTTTCCTGA
66 TT-AAAAGTATCAATTTTCCTGA
* * * *
23335169 AAAAGTGGAAAGTATCAATTTTTCTTGACAATAAAAATTTCAAAATAAAAATATTTTAAGGAAAA
1 AAAAGTCGAAAGTATCAATTTTTCTTGAAAAGAAAAATTTC-AAATAAAAATATTTTAAGAAAAA
23335234 GTTAAAAGTATCAATTTT
65 GTTAAAAGTATCAATTTT
23335252 TTTTACAAAT
Statistics
Matches: 73, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
85 37 0.51
87 6 0.08
88 30 0.41
ACGTcount: A:0.48, C:0.07, G:0.11, T:0.33
Consensus pattern (87 bp):
AAAAGTCGAAAGTATCAATTTTTCTTGAAAAGAAAAATTTCAAATAAAAATATTTTAAGAAAAAG
TTAAAAGTATCAATTTTCCTGA
Found at i:23335339 original size:103 final size:106
Alignment explanation
Indices: 23335210--23335443 Score: 294
Period size: 103 Copynumber: 2.2 Consensus size: 106
23335200 TAAAAATTTC
**
23335210 AAAATAAAAATATTTTAAGGAAAAGTTAAAAGTATCAATTTTTTTTACAAATAAAAATTTC-AAA
1 AAAATAAAAAT-TTCAAAGGAAAAGTTAAAAGTATCAATTTTTTTTACAAATAAAAATTTCAAAA
* *
23335274 AAATAT-TTTGCGA-AAAAGTTGAAAATATCAGCTTTCCTTA
65 AAATATATTTGCGAGAAAAGTTGAAAACATCAACTTTCCTTA
* * **
23335314 AAAATAAAAATTTCAAAGGAAAAGTTAAGATTATCAATTTTTTTTGGAAATAAAAATTTCAAAAA
1 AAAATAAAAATTTCAAAGGAAAAGTTAAAAGTATCAATTTTTTTTACAAATAAAAATTTCAAAAA
* * * * * *
23335379 AATATATTTTCGAGGAAAAGTTGCAAGCATCAATTTTCTTTG
66 AATATATTTGCGA-GAAAAGTTGAAAACATCAACTTTCCTTA
*
23335421 AAAATAAAAATTTCAAAAGAAAA
1 AAAATAAAAATTTCAAAGGAAAA
23335444 ATACTTTAAG
Statistics
Matches: 111, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
103 43 0.39
104 20 0.18
105 6 0.05
107 42 0.38
ACGTcount: A:0.50, C:0.07, G:0.10, T:0.33
Consensus pattern (106 bp):
AAAATAAAAATTTCAAAGGAAAAGTTAAAAGTATCAATTTTTTTTACAAATAAAAATTTCAAAAA
AATATATTTGCGAGAAAAGTTGAAAACATCAACTTTCCTTA
Found at i:23335395 original size:61 final size:61
Alignment explanation
Indices: 23335329--23335478 Score: 189
Period size: 61 Copynumber: 2.5 Consensus size: 61
23335319 AAAAATTTCA
* * *
23335329 AAGGAAAAGTT-AAGATTATCAATTTTTTTTGGAAATAAAAATTTCAAAA-AAATATATTTT
1 AAGGAAAAGTTGAAGA-TATCAATTTTTTTTGAAAATAAAAATTTCAAAAGAAAAATACTTT
* * *
23335389 CGAGGAAAAGTTGCAAG-CATCAATTTTCTTTGAAAATAAAAATTTCAAAAGAAAAATACTTT
1 -AAGGAAAAGTTG-AAGATATCAATTTTTTTTGAAAATAAAAATTTCAAAAGAAAAATACTTT
*
23335451 AAGGAAAAGTTGAAAATATCAATTTTTT
1 AAGGAAAAGTTGAAGATATCAATTTTTT
23335479 CTTGTATAAA
Statistics
Matches: 75, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
60 2 0.03
61 61 0.81
62 9 0.12
63 3 0.04
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.34
Consensus pattern (61 bp):
AAGGAAAAGTTGAAGATATCAATTTTTTTTGAAAATAAAAATTTCAAAAGAAAAATACTTT
Found at i:23343643 original size:12 final size:12
Alignment explanation
Indices: 23343623--23343662 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
23343613 AGAAGAACCT
*
23343623 TCTTGTGGAATA
1 TCTTATGGAATA
23343635 TCTTATGGAACT-
1 TCTTATGGAA-TA
23343647 TCTTATGGAATA
1 TCTTATGGAATA
23343659 TCTT
1 TCTT
23343663 GAAACTTATG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
11 1 0.04
12 23 0.92
13 1 0.04
ACGTcount: A:0.25, C:0.12, G:0.17, T:0.45
Consensus pattern (12 bp):
TCTTATGGAATA
Found at i:23354711 original size:39 final size:39
Alignment explanation
Indices: 23354633--23354709 Score: 95
Period size: 38 Copynumber: 2.0 Consensus size: 39
23354623 TTAAAGTTTG
* *
23354633 ATGCTTATTTTATAGGAATGCTTTTCCAAATAGAATTTT
1 ATGCCTATTTTATAGGAATGCTTTTCCAAACAGAATTTT
* *
23354672 ATGCCTATTTTATAGG-A-GCCTTTTCCAGACAGATTTTT
1 ATGCCTATTTTATAGGAATG-CTTTTCCAAACAGAATTTT
23354710 TAAAAATTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
37 1 0.03
38 17 0.52
39 15 0.45
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.44
Consensus pattern (39 bp):
ATGCCTATTTTATAGGAATGCTTTTCCAAACAGAATTTT
Found at i:23354731 original size:87 final size:86
Alignment explanation
Indices: 23354577--23354759 Score: 217
Period size: 87 Copynumber: 2.1 Consensus size: 86
23354567 TTTTTTTTTT
* * * * ** *
23354577 AAAG-TTTAATGCCTATTTTTTAGGAGCCCTTTTCTAGACAAATCTTTTAAAGTTTGATGCTTAT
1 AAAGATTTTATGCCTATTTTATAGGAGCCCTTTTCCAGACAAATCTTTTAAAATTCAATGCATAT
**
23354641 TTTATAGGAATGCTTTTCCAA
66 TTTATAGGAACCCTTTTCCAA
* * *
23354662 ATAGAATTTTATGCCTATTTTATAGGAG-CCTTTTCCAGACAGATTTTTTAAAAATTCAATGCAT
1 AAAG-ATTTTATGCCTATTTTATAGGAGCCCTTTTCCAGACAAATCTTTT-AAAATTCAATGCAT
*
23354726 ATTTTATAGGAGCCCTTTTCCAA
64 ATTTTATAGGAACCCTTTTCCAA
23354749 AAAGATTTTAT
1 AAAGATTTTAT
23354760 TTTCTAGGTA
Statistics
Matches: 81, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
85 3 0.04
86 25 0.31
87 53 0.65
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.42
Consensus pattern (86 bp):
AAAGATTTTATGCCTATTTTATAGGAGCCCTTTTCCAGACAAATCTTTTAAAATTCAATGCATAT
TTTATAGGAACCCTTTTCCAA
Found at i:23354831 original size:46 final size:46
Alignment explanation
Indices: 23354776--23354933 Score: 165
Period size: 46 Copynumber: 3.3 Consensus size: 46
23354766 GGTAGATTCT
* * *
23354776 TTTTTAAAGTTTGCTGCCTATTTTATAAGAACCCTTTTTGGATAGA
1 TTTTTAAAGTTTGATGCCTATTTTATAAGAGCCCTTTTTAGATAGA
* * *
23354822 TTTTTAAAGTTTGATGTCTATTTTATAATAGCCCTTTTCCAGATAGA
1 TTTTTAAAGTTTGATGCCTATTTTATAAGAGCCCTTTT-TAGATAGA
* * * *
23354869 TTTTTCAAAG-TTGAATGCCTATTTTGTATGAGCCCTTTTTTAGACAAA
1 TTTTT-AAAGTTTG-ATGCCTATTTTATAAGAGCCC-TTTTTAGATAGA
*
23354917 TTTTTTAAAATTTGATG
1 -TTTTTAAAGTTTGATG
23354934 GTTTTTTCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
46 34 0.37
47 14 0.15
48 32 0.35
49 12 0.13
ACGTcount: A:0.27, C:0.12, G:0.14, T:0.47
Consensus pattern (46 bp):
TTTTTAAAGTTTGATGCCTATTTTATAAGAGCCCTTTTTAGATAGA
Found at i:23354920 original size:48 final size:47
Alignment explanation
Indices: 23354776--23354933 Score: 160
Period size: 48 Copynumber: 3.3 Consensus size: 47
23354766 GGTAGATTCT
* * * *
23354776 TTTTTAAAGTTTGCTGCCTATTTTATAAGAACCC-TTTTTGGATAGA
1 TTTTTAAAGTTTGATGCCTATTTTATATGAGCCCTTTTTTAGATAGA
* **
23354822 TTTTTAAAGTTTGATGTCTATTTTATAAT-AGCCCTTTTCCAGATAGA
1 TTTTTAAAGTTTGATGCCTATTTTAT-ATGAGCCCTTTTTTAGATAGA
* * *
23354869 TTTTTCAAAG-TTGAATGCCTATTTTGTATGAGCCCTTTTTTAGACAAA
1 TTTTT-AAAGTTTG-ATGCCTATTTTATATGAGCCCTTTTTTAGATAGA
*
23354917 TTTTTTAAAATTTGATG
1 -TTTTTAAAGTTTGATG
23354934 GTTTTTTCAT
Statistics
Matches: 91, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
46 28 0.31
47 20 0.22
48 35 0.38
49 8 0.09
ACGTcount: A:0.27, C:0.12, G:0.14, T:0.47
Consensus pattern (47 bp):
TTTTTAAAGTTTGATGCCTATTTTATATGAGCCCTTTTTTAGATAGA
Found at i:23355279 original size:20 final size:20
Alignment explanation
Indices: 23355254--23355314 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
23355244 AAATTCAACT
23355254 TTGGTCAAA-TATGATAAAAA
1 TTGGTCAAACT-TGATAAAAA
* *
23355274 TTGGTCAAACTTGGTCAAAA
1 TTGGTCAAACTTGATAAAAA
**
23355294 TTGGTCAAACTCAATAAAAA
1 TTGGTCAAACTTGATAAAAA
23355314 T
1 T
23355315 GTATAGAATC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
20 33 0.97
21 1 0.03
ACGTcount: A:0.44, C:0.11, G:0.15, T:0.30
Consensus pattern (20 bp):
TTGGTCAAACTTGATAAAAA
Found at i:23355289 original size:10 final size:10
Alignment explanation
Indices: 23355274--23355304 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
23355264 ATGATAAAAA
23355274 TTGGTCAAAC
1 TTGGTCAAAC
*
23355284 TTGGTCAAAA
1 TTGGTCAAAC
23355294 TTGGTCAAAC
1 TTGGTCAAAC
23355304 T
1 T
23355305 CAATAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.32
Consensus pattern (10 bp):
TTGGTCAAAC
Found at i:23357443 original size:15 final size:14
Alignment explanation
Indices: 23357402--23357444 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
23357392 TAAAAATAAA
*
23357402 CAAAAATTATTATG
1 CAAAAATTATCATG
23357416 CAAAAATTATCATG
1 CAAAAATTATCATG
*
23357430 CAAATATATATCATG
1 CAAAAAT-TATCATG
23357445 TAATAATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
14 19 0.73
15 7 0.27
ACGTcount: A:0.49, C:0.12, G:0.07, T:0.33
Consensus pattern (14 bp):
CAAAAATTATCATG
Found at i:23357454 original size:17 final size:18
Alignment explanation
Indices: 23357432--23357469 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
23357422 TTATCATGCA
23357432 AATAT-ATATCATGTAAT
1 AATATAATATCATGTAAT
23357449 AATATAAATATCATGTAAT
1 AATAT-AATATCATGTAAT
23357468 AA
1 AA
23357470 GGCAATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.26
19 14 0.74
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.37
Consensus pattern (18 bp):
AATATAATATCATGTAAT
Found at i:23357498 original size:3 final size:3
Alignment explanation
Indices: 23357490--23357534 Score: 72
Period size: 3 Copynumber: 15.0 Consensus size: 3
23357480 GAAAATCATA
* *
23357490 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ATT AAT AAT CAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
23357535 CATCATCATC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (3 bp):
AAT
Found at i:23357535 original size:6 final size:6
Alignment explanation
Indices: 23357483--23357600 Score: 74
Period size: 6 Copynumber: 19.5 Consensus size: 6
23357473 AATAAAAGAA
* * * * * * *
23357483 AATCAT AAATAAT AATAAT AATAAT AATAAT AATAAT ATTAAT AATCAT
1 AATCAT -AATCAT AATCAT AATCAT AATCAT AATCAT AATCAT AATCAT
* * * * * * *
23357532 AATCAT CATCAT CATCAT CATCAT CATCAT TATCAT CATCAT CATCAT
1 AATCAT AATCAT AATCAT AATCAT AATCAT AATCAT AATCAT AATCAT
* * *
23357580 CATCAT AATAAT AATAAT AAT
1 AATCAT AATCAT AATCAT AAT
23357601 AATCCATAGT
Statistics
Matches: 102, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
6 97 0.95
7 5 0.05
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (6 bp):
AATCAT
Found at i:23357539 original size:3 final size:3
Alignment explanation
Indices: 23357527--23357585 Score: 100
Period size: 3 Copynumber: 19.7 Consensus size: 3
23357517 AATATTAATA
* *
23357527 ATC ATA ATC ATC ATC ATC ATC ATC ATC ATC ATC ATT ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
23357575 ATC ATC ATC AT
1 ATC ATC ATC AT
23357586 AATAATAATA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.36, C:0.29, G:0.00, T:0.36
Consensus pattern (3 bp):
ATC
Found at i:23358524 original size:14 final size:14
Alignment explanation
Indices: 23358507--23358553 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
23358497 AATAAAATAA
23358507 ACAAAATTTATCAT
1 ACAAAATTTATCAT
*
23358521 ACAAAAATTATCAT
1 ACAAAATTTATCAT
* *
23358535 GCAAATATATATCAT
1 ACAAA-ATTTATCAT
23358550 ACAA
1 ACAA
23358554 TAATATGAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 17 0.63
15 10 0.37
ACGTcount: A:0.53, C:0.15, G:0.02, T:0.30
Consensus pattern (14 bp):
ACAAAATTTATCAT
Found at i:23358529 original size:15 final size:15
Alignment explanation
Indices: 23358509--23358553 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
23358499 TAAAATAAAC
23358509 AAAATTTATCATACA
1 AAAATTTATCATACA
*
23358524 AAAA-TTATCATGCA
1 AAAATTTATCATACA
* *
23358538 AATATATATCATACA
1 AAAATTTATCATACA
23358553 A
1 A
23358554 TAATATGAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
14 12 0.48
15 13 0.52
ACGTcount: A:0.53, C:0.13, G:0.02, T:0.31
Consensus pattern (15 bp):
AAAATTTATCATACA
Found at i:23358559 original size:15 final size:14
Alignment explanation
Indices: 23358507--23358559 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 14
23358497 AATAAAATAA
*
23358507 ACAAAATTTATCAT
1 ACAAAATATATCAT
23358521 ACAAAA-ATTATCAT
1 ACAAAATA-TATCAT
*
23358535 GCAAATATATATCAT
1 ACAAA-ATATATCAT
23358550 ACAATAATAT
1 ACAA-AATAT
23358560 GAATATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
14 16 0.50
15 14 0.44
16 2 0.06
ACGTcount: A:0.53, C:0.13, G:0.02, T:0.32
Consensus pattern (14 bp):
ACAAAATATATCAT
Found at i:23359464 original size:14 final size:15
Alignment explanation
Indices: 23359445--23359480 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
23359435 AATGATTTTA
23359445 TTGATTTTTGG-GAT
1 TTGATTTTTGGTGAT
23359459 TTGATTTTTGGTGAT
1 TTGATTTTTGGTGAT
*
23359474 TCGATTT
1 TTGATTT
23359481 ATTTCCTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 11 0.55
15 9 0.45
ACGTcount: A:0.14, C:0.03, G:0.25, T:0.58
Consensus pattern (15 bp):
TTGATTTTTGGTGAT
Found at i:23359654 original size:18 final size:16
Alignment explanation
Indices: 23359615--23359657 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
23359605 TCAAGCTTTC
*
23359615 CTTTTTTTTTTCTTACC
1 CTTTTTTTTTTCTTA-A
*
23359632 CTTTTTTTTTACTTTAA
1 CTTTTTTTTTTC-TTAA
23359649 CTTTTTTTT
1 CTTTTTTTT
23359658 CTTTTTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 20 0.87
18 3 0.13
ACGTcount: A:0.09, C:0.16, G:0.00, T:0.74
Consensus pattern (16 bp):
CTTTTTTTTTTCTTAA
Found at i:23360860 original size:13 final size:13
Alignment explanation
Indices: 23360823--23360862 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
23360813 AATATCTTTA
23360823 TAAAACCCCAAACT
1 TAAAACCCCAAA-T
*
23360837 TAAAACTCCAAAT
1 TAAAACCCCAAAT
*
23360850 TGAAACCCCAAAT
1 TAAAACCCCAAAT
23360863 CCAAACCCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.50, C:0.30, G:0.03, T:0.17
Consensus pattern (13 bp):
TAAAACCCCAAAT
Found at i:23360877 original size:7 final size:7
Alignment explanation
Indices: 23360852--23361015 Score: 69
Period size: 7 Copynumber: 24.7 Consensus size: 7
23360842 CTCCAAATTG
*
23360852 AAACCCC
1 AAACCCT
*
23360859 AAATCC-
1 AAACCCT
23360865 AAACCCT
1 AAACCCT
23360872 AAACCCT
1 AAACCCT
*
23360879 AAA-CTT
1 AAACCCT
*
23360885 GAAACACT
1 -AAACCCT
*
23360893 AAATCC-
1 AAACCCT
*
23360899 AAACCCC
1 AAACCCT
*
23360906 AAACCAT
1 AAACCCT
23360913 AAACCC-
1 AAACCCT
* *
23360919 AATCTCT
1 AAACCCT
23360926 AAACCC-
1 AAACCCT
*
23360932 AAATCC-
1 AAACCCT
* *
23360938 AAATCAT
1 AAACCCT
23360945 AAACCCT
1 AAACCCT
*
23360952 AAA-TCT
1 AAACCCT
*
23360958 AAATCCT
1 AAACCCT
23360965 AAACCCT
1 AAACCCT
*
23360972 -AACTCT
1 AAACCCT
**
23360978 AAACTTT
1 AAACCCT
23360985 AAACCCT
1 AAACCCT
**
23360992 AAAATCT
1 AAACCCT
*
23360999 TAACCCT
1 AAACCCT
23361006 -AA-CCT
1 AAACCCT
23361011 AAACC
1 AAACC
23361016 ACAAACCAAC
Statistics
Matches: 116, Mismatches: 31, Indels: 20
0.69 0.19 0.12
Matches are distributed among these distances:
5 3 0.03
6 40 0.34
7 72 0.62
8 1 0.01
ACGTcount: A:0.46, C:0.35, G:0.01, T:0.19
Consensus pattern (7 bp):
AAACCCT
Found at i:23360888 original size:34 final size:34
Alignment explanation
Indices: 23360849--23360916 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
23360839 AAACTCCAAA
* * *
23360849 TTGAAACCCCAAATCCAAACCCTAAACCCTAAAC
1 TTGAAACACCAAATCCAAACCCCAAACCATAAAC
*
23360883 TTGAAACACTAAATCCAAACCCCAAACCATAAAC
1 TTGAAACACCAAATCCAAACCCCAAACCATAAAC
23360917 CCAATCTCTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.47, C:0.35, G:0.03, T:0.15
Consensus pattern (34 bp):
TTGAAACACCAAATCCAAACCCCAAACCATAAAC
Found at i:23360942 original size:20 final size:20
Alignment explanation
Indices: 23360857--23360973 Score: 98
Period size: 20 Copynumber: 5.9 Consensus size: 20
23360847 AATTGAAACC
*
23360857 CCAAATCC-AAACCCTAAAC
1 CCAAATCCTAAACCCTAAAT
* *
23360876 CCTAAA-CTTGAAACACTAAAT
1 CC-AAATCCT-AAACCCTAAAT
* * *
23360897 CCAAACCCCAAACCATAAA-
1 CCAAATCCTAAACCCTAAAT
*
23360916 CCCAATCTCTAAACCC-AAAT
1 CCAAATC-CTAAACCCTAAAT
*
23360936 CCAAATCATAAACCCTAAAT
1 CCAAATCCTAAACCCTAAAT
*
23360956 CTAAATCCTAAACCCTAA
1 CCAAATCCTAAACCCTAA
23360974 CTCTAAACTT
Statistics
Matches: 76, Mismatches: 15, Indels: 13
0.73 0.14 0.12
Matches are distributed among these distances:
19 18 0.24
20 46 0.61
21 12 0.16
ACGTcount: A:0.47, C:0.35, G:0.01, T:0.17
Consensus pattern (20 bp):
CCAAATCCTAAACCCTAAAT
Found at i:23360978 original size:20 final size:21
Alignment explanation
Indices: 23360919--23360994 Score: 88
Period size: 20 Copynumber: 3.8 Consensus size: 21
23360909 CCATAAACCC
*
23360919 AATCTCTAAACCC-AAATCCA
1 AATCTCTAAACCCTAAATCTA
*
23360939 AATC-ATAAACCCTAAATCTA
1 AATCTCTAAACCCTAAATCTA
*
23360959 AATC-CTAAACCCTAACTCTA
1 AATCTCTAAACCCTAAATCTA
*
23360979 AA-CTTTAAACCCTAAA
1 AATCTCTAAACCCTAAA
23360995 ATCTTAACCC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
19 8 0.17
20 40 0.83
ACGTcount: A:0.46, C:0.30, G:0.00, T:0.24
Consensus pattern (21 bp):
AATCTCTAAACCCTAAATCTA
Found at i:23361435 original size:13 final size:14
Alignment explanation
Indices: 23361417--23361445 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
23361407 TCTTTAATCC
23361417 AAAATTT-TTTTTA
1 AAAATTTGTTTTTA
23361430 AAAATTTGTTTTTA
1 AAAATTTGTTTTTA
23361444 AA
1 AA
23361446 TTTAAGTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.55
Consensus pattern (14 bp):
AAAATTTGTTTTTA
Found at i:23362185 original size:56 final size:56
Alignment explanation
Indices: 23362123--23362404 Score: 270
Period size: 58 Copynumber: 4.9 Consensus size: 56
23362113 AAATTTCAAG
* *
23362123 GAAAAATTAATACTTCAACTTTTTCCTCAA-ATATTTTTGAAATATTTTTTATTTTA
1 GAAAAATTAATACTTCAA-TTTTTCCTCAACATTTTTTTGAAATATTTTTTATTTAA
* *
23362179 GAAAAATTGATACTTCAATGTTTT-CTCAGACATTTTTTTAAAAATATTTTTTATTTAA
1 GAAAAATTAATACTTCAAT-TTTTCCTCA-ACATTTTTTT-GAAATATTTTTTATTTAA
* * * *
23362237 GAAAAATTCATACTTTAACTTTTCTCC-AAACATTTTTTTTGAAATA--TTTTAATTAA
1 GAAAAATTAATACTTCAA-TTTT-TCCTCAACA-TTTTTTTGAAATATTTTTTATTTAA
* * * * *
23362293 GAAAATTTGATACTTCAATTTTTCTTTGAAACATTTTTTTTAAATATTATTTTATTTAA
1 GAAAAATTAATACTTCAATTTTTC-CT-CAACATTTTTTTGAAATATT-TTTTATTTAA
* * *
23362352 GAAAAATTAATACCTCAA-TTTTCCTCAAAACAATTTTTTGAAATATGTTTTAT
1 GAAAAATTAATACTTCAATTTTTCCTC--AACATTTTTTTGAAATATTTTTTAT
23362405 ATTTTTTTAT
Statistics
Matches: 187, Mismatches: 23, Indels: 31
0.78 0.10 0.13
Matches are distributed among these distances:
54 2 0.01
55 9 0.05
56 58 0.31
57 19 0.10
58 64 0.34
59 34 0.18
60 1 0.01
ACGTcount: A:0.37, C:0.10, G:0.05, T:0.48
Consensus pattern (56 bp):
GAAAAATTAATACTTCAATTTTTCCTCAACATTTTTTTGAAATATTTTTTATTTAA
Found at i:23362242 original size:58 final size:56
Alignment explanation
Indices: 23362123--23362404 Score: 293
Period size: 56 Copynumber: 4.9 Consensus size: 56
23362113 AAATTTCAAG
* *
23362123 GAAAAATTAATACTTCAACTTTTTCCTC-AA-ATATTTTTGAAATATTTTTTATTTTA
1 GAAAAATTAATACTTCAA-TTTTT-CTCAAACATTTTTTTGAAATATTTTTTATTTAA
* * *
23362179 GAAAAATTGATACTTCAATGTTTTCTCAGACATTTTTTTAAAAATATTTTTTATTTAA
1 GAAAAATTAATACTTCAAT-TTTTCTCAAACATTTTTTT-GAAATATTTTTTATTTAA
* * * *
23362237 GAAAAATTCATACTTTAACTTTTCTCCAAACATTTTTTTTGAAATA--TTTTAATTAA
1 GAAAAATTAATACTTCAATTTTTCT-CAAACA-TTTTTTTGAAATATTTTTTATTTAA
* * * *
23362293 GAAAATTTGATACTTCAATTTTTCTTTGAAACATTTTTTTTAAATATTATTTTATTTAA
1 GAAAAATTAATACTTCAATTTTTC--TCAAACATTTTTTTGAAATATT-TTTTATTTAA
* * * *
23362352 GAAAAATTAATACCTCAATTTTCCTCAAAACAATTTTTTGAAATATGTTTTAT
1 GAAAAATTAATACTTCAATTTTTCTC-AAACATTTTTTTGAAATATTTTTTAT
23362405 ATTTTTTTAT
Statistics
Matches: 188, Mismatches: 26, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
55 4 0.02
56 63 0.34
57 25 0.13
58 60 0.32
59 36 0.19
ACGTcount: A:0.37, C:0.10, G:0.05, T:0.48
Consensus pattern (56 bp):
GAAAAATTAATACTTCAATTTTTCTCAAACATTTTTTTGAAATATTTTTTATTTAA
Found at i:23362243 original size:114 final size:115
Alignment explanation
Indices: 23362123--23362409 Score: 322
Period size: 114 Copynumber: 2.5 Consensus size: 115
23362113 AAATTTCAAG
23362123 GAAAAATTAATACTTCAACTTTTTCCTCAAA-TATTTTTGAAATATTTTTTATTTTAGAAAAATT
1 GAAAAATTAATACTTCAACTTTTTCCTCAAACTATTTTTGAAATATTTTTTATTTTAGAAAAATT
*
23362187 GATACTTCAATGTTTTC-TCAGACATTTTTTTAAAAATATT-TTTTATTTAA
66 GATACTTCAAT-TTTTCTTCAAACATTTTTTT-AAAATATTATTTTATTTAA
* * * * *
23362237 GAAAAATTCATACTTTAAC-TTTT-CTCCAAACATTTTTTTTGAAATA--TTTTAATTAAGAAAA
1 GAAAAATTAATACTTCAACTTTTTCCT-CAAAC--TATTTTTGAAATATTTTTTATTTTAGAAAA
* * *
23362298 TTTGATACTTCAATTTTTCTTTGAAACATTTTTTTTAAATATTATTTTATTTAA
63 ATTGATACTTCAATTTTTC-TTCAAACATTTTTTTAAAATATTATTTTATTTAA
* *
23362352 GAAAAATTAATACCTCAA--TTTTCCTCAAAACAATTTTTTGAAATATGTTTTATATTTT
1 GAAAAATTAATACTTCAACTTTTTCCTC-AAACTA-TTTTTGAAATAT-TTTT-TATTTT
23362410 TTTATTTAAA
Statistics
Matches: 143, Mismatches: 16, Indels: 24
0.78 0.09 0.13
Matches are distributed among these distances:
112 2 0.01
113 13 0.09
114 66 0.46
115 43 0.30
116 12 0.08
117 3 0.02
118 4 0.03
ACGTcount: A:0.36, C:0.10, G:0.05, T:0.49
Consensus pattern (115 bp):
GAAAAATTAATACTTCAACTTTTTCCTCAAACTATTTTTGAAATATTTTTTATTTTAGAAAAATT
GATACTTCAATTTTTCTTCAAACATTTTTTTAAAATATTATTTTATTTAA
Found at i:23363883 original size:3 final size:3
Alignment explanation
Indices: 23363877--23363919 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
23363867 GAAAAAAATC
23363877 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
23363920 TATGTATATA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:23364766 original size:84 final size:82
Alignment explanation
Indices: 23364318--23364747 Score: 307
Period size: 84 Copynumber: 5.1 Consensus size: 82
23364308 GAAGAACTAG
* * * * * *
23364318 GAGATTATGCCCAGAGATCTTACAAATCTCAATTCTAAAACAAAATCAAC-CTGAAAAGACTTAT
1 GAGATTATGCCTAAAG-TCTTACAAATCTCAA-TCTAAAATAAATTCAGCTC-G-AAAGACTTAC
* * * *
23364382 GAACCTTG-CTTAGATGACTTG
62 GAATCTTGCCTGA-AGGACTTA
* * * * * *
23364403 GAAATTATG-CTCAAAGATTTTACAAATTTTAACTCTAAAATAAATTTAGCTCAAAAGACTTACG
1 GAGATTATGCCT-AAAG-TCTTACAAATCTCAA-TCTAAAATAAATTCAGCTCGAAAGACTTACG
* *
23364467 AATCTTGCCTGGAGGATTTA
63 AATCTTGCCTGAAGGACTTA
* * * *
23364487 GAGATTACGCCTAAAAGTCTTTCAAATCTTGAATCTAAAATAGATTC-GACTCGAAAGACTTACG
1 GAGATTATGCCT-AAAGTCTTACAAATC-TCAATCTAAAATAAATTCAG-CTCGAAAGACTTACG
* *
23364551 AATCTTG-CTCGAAGAATTTA
63 AATCTTGCCT-GAAGGACTTA
* * * * *
23364571 GAGATTATGCCTAGAGATCTTACAAATC-CTAACTCTAAAATAGATTTAGCTTTG-AAGATTTAC
1 GAGATTATGCCTAAAG-TCTTACAAATCTC-AA-TCTAAAATAAATTCAGC-TCGAAAGACTTAC
* *
23364634 GAATCTTGCCCGAAGGACTTG
62 GAATCTTGCCTGAAGGACTTA
* * * * * *
23364655 GGGATTATGCTCGAAGGTCTTATAAATCTCATTTCTAAAATAAATTCAGCTCGAAAGACTTACAA
1 GAGATTATGC-CTAAAGTCTTACAAATCTCA-ATCTAAAATAAATTCAGCTCGAAAGACTTACGA
23364720 ATCTTGCCTGAAGGACTTA
64 ATCTTGCCTGAAGGACTTA
*
23364739 GGGATTATG
1 GAGATTATG
23364748 TTTGGATGTT
Statistics
Matches: 273, Mismatches: 55, Indels: 35
0.75 0.15 0.10
Matches are distributed among these distances:
83 10 0.04
84 206 0.75
85 56 0.21
86 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.30
Consensus pattern (82 bp):
GAGATTATGCCTAAAGTCTTACAAATCTCAATCTAAAATAAATTCAGCTCGAAAGACTTACGAAT
CTTGCCTGAAGGACTTA
Found at i:23365112 original size:22 final size:22
Alignment explanation
Indices: 23365055--23365119 Score: 85
Period size: 23 Copynumber: 2.9 Consensus size: 22
23365045 GGAAGTCATT
*
23365055 TAAATCATGCCCAAATGACTTA
1 TAAATCATGCCCAAAGGACTTA
* * *
23365077 AAAGATAATGCCCAAAGGTCTTA
1 TAA-ATCATGCCCAAAGGACTTA
23365100 TAAATCATGCCCAAAGGACT
1 TAAATCATGCCCAAAGGACT
23365120 CGGAAATAAG
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
22 17 0.49
23 18 0.51
ACGTcount: A:0.42, C:0.22, G:0.14, T:0.23
Consensus pattern (22 bp):
TAAATCATGCCCAAAGGACTTA
Found at i:23371532 original size:57 final size:56
Alignment explanation
Indices: 23371466--23371622 Score: 181
Period size: 57 Copynumber: 2.8 Consensus size: 56
23371456 AACTTTTTTC
*
23371466 AAATATTTTTGGAATTTTTTTTATTTTAAGAAAATTGATACTTCAACTTTTCCTAAA
1 AAATATTTTTGGAATATTTTTTA-TTTAAGAAAATTGATACTTCAACTTTTCCTAAA
* * * * *
23371523 AAATGTTTTTGAAATAATTTTTATTTAAGGAAAATTGATACTTCGACTTTTCCTCAA
1 AAATATTTTTGGAATATTTTTTATTTAA-GAAAATTGATACTTCAACTTTTCCTAAA
* * * * *
23371580 ATATTTTTTTTGAA-ATATTTTACTTAAGAAAAATTGATACTTC
1 AAATATTTTTGGAATATTTTTTATTTAAG-AAAATTGATACTTC
23371623 GTTTGAAATA
Statistics
Matches: 85, Mismatches: 13, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
55 1 0.01
56 29 0.34
57 55 0.65
ACGTcount: A:0.36, C:0.09, G:0.08, T:0.47
Consensus pattern (56 bp):
AAATATTTTTGGAATATTTTTTATTTAAGAAAATTGATACTTCAACTTTTCCTAAA
Found at i:23371723 original size:60 final size:59
Alignment explanation
Indices: 23371624--23371852 Score: 288
Period size: 59 Copynumber: 3.9 Consensus size: 59
23371614 TGATACTTCG
*
23371624 TTTGAAATATTTTTTTATTTATA-AAAAATTAATACTTCAACTTTCTT-TCAAAAAATTTT
1 TTTGAAATATTTTTTTATTTA-AGAAAAATTGATACTTCAACTTT-TTCTCAAAAAATTTT
* * ** *
23371683 TTTGAAATAATTTTTTTATTTAAGGAAAACTGATGTTTCAACTTTTTCTCAAAATATTTT
1 TTTGAAAT-ATTTTTTTATTTAAGAAAAATTGATACTTCAACTTTTTCTCAAAAAATTTT
* * * *
23371743 TTTGAAATATTTTTTTGTTTAAGGAAAATTGATACCTCAA-TTTTTCCTCAAAAATTTTT
1 TTTGAAATATTTTTTTATTTAAGAAAAATTGATACTTCAACTTTTT-CTCAAAAAATTTT
*
23371802 TTTGAAATATGTTTTTATTTAAGAAAAATTGATACTTCAA-TTTTTCT-AAAA
1 TTTGAAATATTTTTTTATTTAAGAAAAATTGATACTTCAACTTTTTCTCAAAA
23371853 TATTATTCTA
Statistics
Matches: 149, Mismatches: 17, Indels: 10
0.85 0.10 0.06
Matches are distributed among these distances:
57 4 0.03
58 7 0.05
59 90 0.60
60 48 0.32
ACGTcount: A:0.36, C:0.08, G:0.07, T:0.49
Consensus pattern (59 bp):
TTTGAAATATTTTTTTATTTAAGAAAAATTGATACTTCAACTTTTTCTCAAAAAATTTT
Found at i:23371744 original size:155 final size:151
Alignment explanation
Indices: 23371473--23371755 Score: 401
Period size: 155 Copynumber: 1.8 Consensus size: 151
23371463 TTCAAATATT
* *
23371473 TTTGGAATTTTTTTTATTTTAAGAAAATTGATACTTCAACTTTTCCTAAAAAATGTTTTTGAAAT
1 TTTGAAATTTTTTTTATTTTAAGAAAATTAATACTTCAACTTTTCCTAAAAAATGTTTTTGAAAT
* *
23371538 AATTTTTATTTAAGGAAAATTGATACTTCGACTTTTCCTCAAATATTTTTTTTGAAATATTTTAC
66 AATTTTTATTTAAGGAAAACTGATACTTCAACTTTTCCTCAAATATTTTTTTTGAAATATTTTAC
23371603 TTAAGAAAAATTGATACTTCG
131 TTAAGAAAAATTGATACTTCG
* *
23371624 TTTGAAATATTTTTTTATTTATAA-AAAATTAATACTTCAAC-TTTCTTTCAAAAAATTTTTTTG
1 TTTGAAAT-TTTTTTTATTT-TAAGAAAATTAATACTTCAACTTTTC-CT-AAAAAATGTTTTTG
** *
23371687 AAATAATTTTTTTATTTAAGGAAAACTGATGTTTCAACTTTTTCTCAAA-ATATTTTTTTGAAAT
62 AAATAA--TTTTTATTTAAGGAAAACTGATACTTCAACTTTTCCTCAAATAT-TTTTTTTGAAAT
23371751 ATTTT
124 ATTTT
23371756 TTTGTTTAAG
Statistics
Matches: 116, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
151 11 0.09
152 28 0.24
153 22 0.19
154 2 0.02
155 53 0.46
ACGTcount: A:0.35, C:0.08, G:0.07, T:0.49
Consensus pattern (151 bp):
TTTGAAATTTTTTTTATTTTAAGAAAATTAATACTTCAACTTTTCCTAAAAAATGTTTTTGAAAT
AATTTTTATTTAAGGAAAACTGATACTTCAACTTTTCCTCAAATATTTTTTTTGAAATATTTTAC
TTAAGAAAAATTGATACTTCG
Found at i:23371750 original size:13 final size:13
Alignment explanation
Indices: 23371734--23371759 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
23371724 CTTTTTCTCA
23371734 AAATATTTTTTTG
1 AAATATTTTTTTG
23371747 AAATATTTTTTTG
1 AAATATTTTTTTG
23371760 TTTAAGGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
AAATATTTTTTTG
Found at i:23371758 original size:119 final size:115
Alignment explanation
Indices: 23371624--23371856 Score: 299
Period size: 119 Copynumber: 2.0 Consensus size: 115
23371614 TGATACTTCG
*
23371624 TTTGAAATATTTTTTTATTTATA-AAAAATTAATACTTCAACTTTCTT-TCAAAAAATTTTTTTG
1 TTTGAAATATTTTTTTATTTA-AGAAAAATTAATACCTCAA-TTT-TTCTCAAAAAATTTTTTTG
* * **
23371687 AAATAATTTTTTTATTTAAGGAAAACTGATGTTTCAACTTTTTCTCAAAATATTTT
63 AAAT-ATGTTTTTATTTAAGAAAAACTGATACTTCAA-TTTTTCT-AAAATATTTT
* * * *
23371743 TTTGAAATATTTTTTTGTTTAAGGAAAATTGATACCTCAATTTTTCCTCAAAAATTTTTTTTGAA
1 TTTGAAATATTTTTTTATTTAAGAAAAATTAATACCTCAATTTTT-CTCAAAAAATTTTTTTGAA
*
23371808 ATATGTTTTTATTTAAGAAAAATTGATACTTCAATTTTTCTAAAATATT
65 ATATGTTTTTATTTAAGAAAAACTGATACTTCAATTTTTCTAAAATATT
23371857 ATTCTATTTA
Statistics
Matches: 101, Mismatches: 10, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
116 8 0.08
117 9 0.09
118 31 0.31
119 53 0.52
ACGTcount: A:0.36, C:0.08, G:0.06, T:0.50
Consensus pattern (115 bp):
TTTGAAATATTTTTTTATTTAAGAAAAATTAATACCTCAATTTTTCTCAAAAAATTTTTTTGAAA
TATGTTTTTATTTAAGAAAAACTGATACTTCAATTTTTCTAAAATATTTT
Found at i:23371844 original size:23 final size:23
Alignment explanation
Indices: 23371818--23371888 Score: 58
Period size: 23 Copynumber: 3.2 Consensus size: 23
23371808 ATATGTTTTT
23371818 ATTTAAGAAAAATTGATACTTCA
1 ATTTAAGAAAAATTGATACTTCA
**** *
23371841 ATTTTTCTAAAA-T-ATTA-TTCT
1 ATTTAAGAAAAATTGA-TACTTCA
*
23371862 ATTTAAGAAAAATTGATACTTTA
1 ATTTAAGAAAAATTGATACTTCA
23371885 ATTT
1 ATTT
23371889 CTCCTTAAAA
Statistics
Matches: 33, Mismatches: 11, Indels: 8
0.63 0.21 0.15
Matches are distributed among these distances:
21 12 0.36
22 6 0.18
23 15 0.45
ACGTcount: A:0.42, C:0.07, G:0.06, T:0.45
Consensus pattern (23 bp):
ATTTAAGAAAAATTGATACTTCA
Found at i:23371844 original size:45 final size:45
Alignment explanation
Indices: 23371795--23371888 Score: 129
Period size: 44 Copynumber: 2.1 Consensus size: 45
23371785 TTTCCTCAAA
* * *
23371795 AATTTTTTTTGAAATATGT-TTTTATTTAAGAAAAATTGATACTTC
1 AATTTTTTCTAAAATAT-TATTCTATTTAAGAAAAATTGATACTTC
*
23371840 AA-TTTTTCTAAAATATTATTCTATTTAAGAAAAATTGATACTTT
1 AATTTTTTCTAAAATATTATTCTATTTAAGAAAAATTGATACTTC
23371884 AATTT
1 AATTT
23371889 CTCCTTAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 1 0.02
44 38 0.88
45 4 0.09
ACGTcount: A:0.38, C:0.05, G:0.06, T:0.50
Consensus pattern (45 bp):
AATTTTTTCTAAAATATTATTCTATTTAAGAAAAATTGATACTTC
Found at i:23373360 original size:12 final size:11
Alignment explanation
Indices: 23373312--23373416 Score: 51
Period size: 12 Copynumber: 9.5 Consensus size: 11
23373302 AATAAAATAA
*
23373312 AATAAAAAAAT
1 AATAAATAAAT
*
23373323 CAATAAAGATAAT
1 -AATAAATA-AAT
23373336 AAT-AAT-AAT
1 AATAAATAAAT
23373345 AATAAATAAAT
1 AATAAATAAAT
**
23373356 AAATAAATATGT
1 -AATAAATAAAT
* *
23373368 -ATATATAAAA
1 AATAAATAAAT
*
23373378 AATAAATTCAACT
1 AATAAA-T-AAAT
23373391 AATAAA-ATAAT
1 AATAAATA-AAT
23373402 AA-AAATAAA-
1 AATAAATAAAT
23373411 AATAAA
1 AATAAA
23373417 ATAACAATAC
Statistics
Matches: 71, Mismatches: 12, Indels: 22
0.68 0.11 0.21
Matches are distributed among these distances:
9 8 0.11
10 18 0.25
11 14 0.20
12 20 0.28
13 11 0.15
ACGTcount: A:0.70, C:0.03, G:0.02, T:0.26
Consensus pattern (11 bp):
AATAAATAAAT
Found at i:23373382 original size:33 final size:32
Alignment explanation
Indices: 23373302--23373416 Score: 94
Period size: 33 Copynumber: 3.5 Consensus size: 32
23373292 TTAATATCTA
* *
23373302 AATAA-AATAAAATAAAAAAATCAATAAAGAT
1 AATAATAATAAAATAAATAAATAAATAAAGAT
*
23373333 AATAATAATAATAATAAATAAATAAATAAATAT
1 AATAATAATAA-AATAAATAAATAAATAAAGAT
* *
23373366 GTATATATAA-AAAATAAATTCAACT-AATAAA-AT
1 -AATA-ATAATAAAATAAA-T-AAATAAATAAAGAT
*
23373399 AATAAAAATAAAAATAAA
1 AATAATAAT-AAAATAAA
23373417 ATAACAATAC
Statistics
Matches: 69, Mismatches: 7, Indels: 14
0.77 0.08 0.16
Matches are distributed among these distances:
31 8 0.12
32 8 0.12
33 34 0.49
34 12 0.17
35 7 0.10
ACGTcount: A:0.70, C:0.03, G:0.02, T:0.25
Consensus pattern (32 bp):
AATAATAATAAAATAAATAAATAAATAAAGAT
Found at i:23374224 original size:21 final size:20
Alignment explanation
Indices: 23374199--23374244 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
23374189 TAAAATTTAT
23374199 CAAAAAGACATTTTGGTCTA
1 CAAAAAGACATTTTGGTCTA
23374219 CAAAAAGACATTTTGGTCTA
1 CAAAAAGACATTTTGGTCTA
23374239 CAAAAA
1 CAAAAA
23374245 TAAAGATAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.46, C:0.15, G:0.13, T:0.26
Consensus pattern (20 bp):
CAAAAAGACATTTTGGTCTA
Found at i:23382044 original size:24 final size:24
Alignment explanation
Indices: 23381985--23382044 Score: 63
Period size: 23 Copynumber: 2.6 Consensus size: 24
23381975 GATGAACCAT
23381985 AAAA-AATAAAAATGATAAATACA
1 AAAATAATAAAAATGATAAATACA
** *
23382008 AAAATAA-AAAAATTCTAAA-ATA
1 AAAATAATAAAAATGATAAATACA
23382030 AAAATGAATAAAAAT
1 AAAAT-AATAAAAAT
23382045 CCCTACAATC
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
22 7 0.23
23 16 0.52
24 8 0.26
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.20
Consensus pattern (24 bp):
AAAATAATAAAAATGATAAATACA
Found at i:23382392 original size:41 final size:41
Alignment explanation
Indices: 23382261--23382580 Score: 272
Period size: 41 Copynumber: 7.7 Consensus size: 41
23382251 GGCTCAACGA
* * *
23382261 CAGAGACTCAACAACTTTGGAAAAATAAATGAAGCTCCTCTAAA
1 CAGAGGCTCAACGACTTT-GAAAAATAAATG--GCTCCTCTAAT
* * *
23382305 CAGAGGCTCAACGACTTTTGGAAAGTAAAAGGCTCCTCTAAT
1 CAGAGGCTCAACGAC-TTTGAAAAATAAATGGCTCCTCTAAT
23382347 CAGAGGCTCAACGACTTTGAAAAATAAATGGCTCCTCTAAT
1 CAGAGGCTCAACGACTTTGAAAAATAAATGGCTCCTCTAAT
** *
23382388 CAGAGGCTCAACGACTTTGAAAAATAAACAAAGCTCCTCTAAA
1 CAGAGGCTCAACGACTTTGAAAAAT-AA-ATGGCTCCTCTAAT
* *** * * *
23382431 CAGAGGCTCAATGACTTTGAAAAATAAATAAATTCTTTAAG
1 CAGAGGCTCAACGACTTTGAAAAATAAATGGCTCCTCTAAT
* * * *
23382472 CAGAAGCATC-ATGAC-TTCAAAAATAAAT-GCTCTTCTAAGT
1 CAGAGGC-TCAACGACTTTGAAAAATAAATGGCTCCTCTAA-T
* * * * *
23382512 -AGAGGCACCACAACTTTGAAAAGTAAATTGCTCCTCTAAAT
1 CAGAGGCTCAACGACTTTGAAAAATAAATGGCTCCTCT-AAT
* * *
23382553 -AGAGGCACCACGACTTTGGAAAATAAAT
1 CAGAGGCTCAACGACTTTGAAAAATAAAT
23382581 TACTCTTTAA
Statistics
Matches: 230, Mismatches: 37, Indels: 21
0.80 0.13 0.07
Matches are distributed among these distances:
38 1 0.00
39 13 0.06
40 23 0.10
41 100 0.43
42 33 0.14
43 35 0.15
44 22 0.10
45 3 0.01
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.23
Consensus pattern (41 bp):
CAGAGGCTCAACGACTTTGAAAAATAAATGGCTCCTCTAAT
Found at i:23382449 original size:84 final size:84
Alignment explanation
Indices: 23382260--23382459 Score: 278
Period size: 84 Copynumber: 2.4 Consensus size: 84
23382250 AGGCTCAACG
* *
23382260 ACAGAGACTCAACAACTTTGGAAAAATAAATGAAGCTCCTCTAAACAGAGGCTCAACGACTTTTG
1 ACAGAGGCTCAACGACTTT-GAAAAATAAATG-AGCTCCTCTAAACAGAGGCTCAACGACTTTTG
* * *
23382325 GAAAGTAAAAGGCTCCTCTAA
64 AAAAATAAAAAGCTCCTCTAA
* *
23382346 TCAGAGGCTCAACGACTTTGAAAAATAAATG-GCTCCTCTAATCAGAGGCTCAACGAC-TTTGAA
1 ACAGAGGCTCAACGACTTTGAAAAATAAATGAGCTCCTCTAAACAGAGGCTCAACGACTTTTGAA
23382409 AAATAAACAAAGCTCCTCTAA
66 AAAT-AA-AAAGCTCCTCTAA
*
23382430 ACAGAGGCTCAATGACTTTGAAAAATAAAT
1 ACAGAGGCTCAACGACTTTGAAAAATAAAT
23382460 AAATTCTTTA
Statistics
Matches: 103, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
82 8 0.08
83 27 0.26
84 40 0.39
85 12 0.12
86 16 0.16
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (84 bp):
ACAGAGGCTCAACGACTTTGAAAAATAAATGAGCTCCTCTAAACAGAGGCTCAACGACTTTTGAA
AAATAAAAAGCTCCTCTAA
Found at i:23382488 original size:84 final size:83
Alignment explanation
Indices: 23382260--23382498 Score: 214
Period size: 84 Copynumber: 2.8 Consensus size: 83
23382250 AGGCTCAACG
* * * * * *
23382260 ACAGAGACTCAACAACTTTGGAAAAATAAATGAAGCTCCTCTAAACAGAGGCTCAACGACTTTTG
1 ACAGAGGCTCAACGACTTT-GAAAAATAAAT-AA-ATCCTCTAAGCAGAAGCTCAACGAC--TTC
* * *
23382325 GAAAGT-AA-AAGGCTCCTCTAA
61 AAAAATAAACAAAGCTCCTCTAA
* *** * * *
23382346 TCAGAGGCTCAACGACTTTGAAAAATAAATGGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAA
1 ACAGAGGCTCAACGACTTTGAAAAATAAATAAATCCTCTAAGCAGAAGCTCAACGAC-TTCAAAA
23382411 ATAAACAAAGCTCCTCTAA
65 ATAAACAAAGCTCCTCTAA
* * * *
23382430 ACAGAGGCTCAATGACTTTGAAAAATAAATAAATTCTTTAAGCAGAAGCATC-ATGACTTCAAAA
1 ACAGAGGCTCAACGACTTTGAAAAATAAATAAATCCTCTAAGCAGAAGC-TCAACGACTTCAAAA
23382494 ATAAA
65 ATAAA
23382499 TGCTCTTCTA
Statistics
Matches: 130, Mismatches: 20, Indels: 9
0.82 0.13 0.06
Matches are distributed among these distances:
82 8 0.06
83 37 0.28
84 56 0.43
85 13 0.10
86 16 0.12
ACGTcount: A:0.42, C:0.20, G:0.15, T:0.23
Consensus pattern (83 bp):
ACAGAGGCTCAACGACTTTGAAAAATAAATAAATCCTCTAAGCAGAAGCTCAACGACTTCAAAAA
TAAACAAAGCTCCTCTAA
Found at i:23383683 original size:63 final size:63
Alignment explanation
Indices: 23383579--23383700 Score: 181
Period size: 63 Copynumber: 1.9 Consensus size: 63
23383569 GCTTATTAGC
* ** * *
23383579 ACTAACCATTTCAAAATAAATTTCATGTTCTGTCACTTGGTCATCGTTCATAAGCTTCTCAAT
1 ACTAACCATTTCAAAACAAATTTCATCATCTATCACTTGGTCATCATTCATAAGCTTCTCAAT
* *
23383642 ACTAGCCATTTCAAAACAAATTTTATCATCTATCACTTGGTCATCATTCATAAGCTTCT
1 ACTAACCATTTCAAAACAAATTTCATCATCTATCACTTGGTCATCATTCATAAGCTTCT
23383701 TAGCACCAGT
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
63 52 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (63 bp):
ACTAACCATTTCAAAACAAATTTCATCATCTATCACTTGGTCATCATTCATAAGCTTCTCAAT
Found at i:23384411 original size:9 final size:9
Alignment explanation
Indices: 23384399--23384480 Score: 58
Period size: 9 Copynumber: 8.6 Consensus size: 9
23384389 CTTTTTTTAA
23384399 TTTTCTCATTT
1 TTTTCTCA--T
**
23384410 TTTTCTTTT
1 TTTTCTCAT
23384419 TTTTCTCTAT
1 TTTTCTC-AT
*
23384429 TTTTTTCAT
1 TTTTCTCAT
23384438 TTTT-TCAT
1 TTTTCTCAT
23384446 TTTTCATCATCT
1 TTTTC-TCA--T
* *
23384458 TTTTTTCTT
1 TTTTCTCAT
23384467 TTTTCTCAT
1 TTTTCTCAT
23384476 TTTTC
1 TTTTC
23384481 ATCCATTGTT
Statistics
Matches: 57, Mismatches: 9, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
8 8 0.14
9 26 0.46
10 10 0.18
11 8 0.14
12 5 0.09
ACGTcount: A:0.09, C:0.17, G:0.00, T:0.74
Consensus pattern (9 bp):
TTTTCTCAT
Found at i:23384422 original size:20 final size:22
Alignment explanation
Indices: 23384399--23384442 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 22
23384389 CTTTTTTTAA
23384399 TTTTCTC-ATTTTTTTC-TTTT
1 TTTTCTCTATTTTTTTCATTTT
23384419 TTTTCTCTATTTTTTTCATTTT
1 TTTTCTCTATTTTTTTCATTTT
23384441 TT
1 TT
23384443 CATTTTTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 7 0.32
21 9 0.41
22 6 0.27
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.80
Consensus pattern (22 bp):
TTTTCTCTATTTTTTTCATTTT
Found at i:23384440 original size:38 final size:37
Alignment explanation
Indices: 23384390--23384482 Score: 100
Period size: 38 Copynumber: 2.5 Consensus size: 37
23384380 AATTTGAATC
* * *
23384390 TTTTTTTAATTTTCTCATTTTT-TTC-TTTTTTTTCTCT
1 TTTTTTTCATTTT-TCATTTTTCATCATCTTTTTT-TCT
23384427 ATTTTTTTCATTTTTTCATTTTTCATCATCTTTTTTTCT
1 -TTTTTTTCAT-TTTTCATTTTTCATCATCTTTTTTTCT
*
23384466 TTTTTCTCATTTTTCAT
1 TTTTTTTCATTTTTCAT
23384483 CCATTGTTGA
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
37 7 0.15
38 26 0.54
39 8 0.17
40 7 0.15
ACGTcount: A:0.11, C:0.15, G:0.00, T:0.74
Consensus pattern (37 bp):
TTTTTTTCATTTTTCATTTTTCATCATCTTTTTTTCT
Found at i:23384443 original size:20 final size:20
Alignment explanation
Indices: 23384399--23384443 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
23384389 CTTTTTTTAA
*
23384399 TTTTCTCATTTTTTTCTTTT
1 TTTTCTCATTTTTTTCTATT
23384419 TTTTCTCTATTTTTTTC-ATT
1 TTTTCTC-ATTTTTTTCTATT
23384439 TTTTC
1 TTTTC
23384444 ATTTTTCATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 14 0.61
21 9 0.39
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.78
Consensus pattern (20 bp):
TTTTCTCATTTTTTTCTATT
Found at i:23384460 original size:20 final size:19
Alignment explanation
Indices: 23384399--23384479 Score: 67
Period size: 21 Copynumber: 4.2 Consensus size: 19
23384389 CTTTTTTTAA
* * *
23384399 TTTTCTCATTTTTTTCTTT
1 TTTTTTCATTTTTCTCATT
*
23384418 TTTTTCTCTATTTTTTTCA--
1 TTTTT-TC-ATTTTTCTCATT
23384437 TTTTTTCATTTTTCATCATCT
1 TTTTTTCATTTTTC-TCAT-T
*
23384458 TTTTTTCTTTTTTCTCATT
1 TTTTTTCATTTTTCTCATT
23384477 TTT
1 TTT
23384480 CATCCATTGT
Statistics
Matches: 52, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
17 6 0.12
18 5 0.10
19 13 0.25
20 6 0.12
21 22 0.42
ACGTcount: A:0.09, C:0.16, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTTTTCATTTTTCTCATT
Found at i:23388515 original size:57 final size:57
Alignment explanation
Indices: 23388450--23388660 Score: 266
Period size: 58 Copynumber: 3.6 Consensus size: 57
23388440 TTTGTACAGG
* * * *
23388450 AAAAATTGATACTTTTAACTTTTTCCTAAAATATTTTTTAGAAA-CTTAAATTTCGAA
1 AAAAATTGATACTTTCAACTTTTTCCAAAAATATTTTTTAGAAAGCTT-ATTTTCAAA
*
23388507 GAAAATTGATACTTTCAACTTTTTCCCAAAAATATGTTTTTTAGAAAGCTTATTTTCAAA
1 AAAAATTGATACTTTCAACTTTTT-CCAAAAATA--TTTTTTAGAAAGCTTATTTTCAAA
* *
23388567 AAAAATT-AGTACTTTCAACTTTTTCTCAGAAATATTTTTTAGAAAGCTTATTTTTAAA
1 AAAAATTGA-TACTTTCAACTTTTTC-CAAAAATATTTTTTAGAAAGCTTATTTTCAAA
*
23388625 AAAAATTGATAATTTCAAC-TTTTCTCAAAAATATTT
1 AAAAATTGATACTTTCAACTTTTTC-CAAAAATATTT
23388661 AAGGAACCAG
Statistics
Matches: 137, Mismatches: 10, Indels: 14
0.85 0.06 0.09
Matches are distributed among these distances:
57 38 0.28
58 47 0.34
59 3 0.02
60 46 0.34
61 3 0.02
ACGTcount: A:0.39, C:0.11, G:0.06, T:0.43
Consensus pattern (57 bp):
AAAAATTGATACTTTCAACTTTTTCCAAAAATATTTTTTAGAAAGCTTATTTTCAAA
Found at i:23388641 original size:58 final size:58
Alignment explanation
Indices: 23388450--23388660 Score: 277
Period size: 60 Copynumber: 3.6 Consensus size: 58
23388440 TTTGTACAGG
* * * *
23388450 AAAAATTGATACTTTTAACTTTTTC-CTAAAATATTTTTTAGAAA-CTTAAATTTCGAA
1 AAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAGCTT-ATTTTCAAA
* *
23388507 GAAAATTGATACTTTCAACTTTTTCCCAAAAATATGTTTTTTAGAAAGCTTATTTTCAAA
1 AAAAATTGATACTTTCAACTTTTTCTCAAAAATA--TTTTTTAGAAAGCTTATTTTCAAA
* *
23388567 AAAAATT-AGTACTTTCAACTTTTTCTCAGAAATATTTTTTAGAAAGCTTATTTTTAAA
1 AAAAATTGA-TACTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAGCTTATTTTCAAA
*
23388625 AAAAATTGATAATTTCAAC-TTTTCTCAAAAATATTT
1 AAAAATTGATACTTTCAACTTTTTCTCAAAAATATTT
23388661 AAGGAACCAG
Statistics
Matches: 137, Mismatches: 11, Indels: 12
0.86 0.07 0.08
Matches are distributed among these distances:
57 39 0.28
58 46 0.34
59 2 0.01
60 47 0.34
61 3 0.02
ACGTcount: A:0.39, C:0.11, G:0.06, T:0.43
Consensus pattern (58 bp):
AAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAGCTTATTTTCAAA
Found at i:23389703 original size:33 final size:33
Alignment explanation
Indices: 23389661--23389723 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
23389651 TGTTTCTCAA
*
23389661 AATCAAATAAAGATTCTGGGAGCCTTCCTTCAG
1 AATCAAATAAAGATTCTGAGAGCCTTCCTTCAG
23389694 AATCAAATAAAGATTCTGAGAGCCTTCCTT
1 AATCAAATAAAGATTCTGAGAGCCTTCCTT
23389724 TAGCACATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.29
Consensus pattern (33 bp):
AATCAAATAAAGATTCTGAGAGCCTTCCTTCAG
Found at i:23396652 original size:18 final size:19
Alignment explanation
Indices: 23396612--23396657 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
23396602 CTTGAAGATT
* *
23396612 TTTTTGTTTTGTTTTATTG
1 TTTTTGTTGTGATTTATTG
23396631 -TTTTGTTGTGATTT-TTG
1 TTTTTGTTGTGATTTATTG
*
23396648 TTTTTATTGT
1 TTTTTGTTGT
23396658 CCTTTCTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
17 3 0.13
18 20 0.87
ACGTcount: A:0.07, C:0.00, G:0.17, T:0.76
Consensus pattern (19 bp):
TTTTTGTTGTGATTTATTG
Found at i:23396849 original size:46 final size:45
Alignment explanation
Indices: 23396693--23396866 Score: 143
Period size: 46 Copynumber: 3.8 Consensus size: 45
23396683 GACTTGACTA
* * * *
23396693 TTTTGAAAATAAATTTAAAGACTCATTTTAGCAAA-AGCTCTAGAAC
1 TTTTGAAAATAAATTTAAAAACTCCTTTAAGCAAAGA-CTC-AAAAC
* * * * * * * *
23396739 TTTCGAAAGTAAATTTAAAATCTTCTTTAAACAAAGGCTTAATAC
1 TTTTGAAAATAAATTTAAAAACTCCTTTAAGCAAAGACTCAAAAC
* *
23396784 TTTTCAAAAGTAAATTTAAAAACTCCCTTAAGCAAAGACTCAACAAC
1 TTTTGAAAA-TAAATTTAAAAACTCCTTTAAGCAAAGACTCAA-AAC
* * * *
23396831 TTTTGAAAATAAAGTTAAAAGCTCTTTTAAGTAAAG
1 TTTTGAAAATAAATTTAAAAACTCCTTTAAGCAAAG
23396867 GTTCAATGAG
Statistics
Matches: 97, Mismatches: 28, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
45 9 0.09
46 78 0.80
47 10 0.10
ACGTcount: A:0.44, C:0.14, G:0.10, T:0.32
Consensus pattern (45 bp):
TTTTGAAAATAAATTTAAAAACTCCTTTAAGCAAAGACTCAAAAC
Found at i:23396977 original size:48 final size:49
Alignment explanation
Indices: 23396925--23397038 Score: 160
Period size: 49 Copynumber: 2.3 Consensus size: 49
23396915 ACTCAACAAT
*
23396925 TTTAAAAATCTCATCTTGAAAAGTT-TCTCATAAAC-GAGGCTTTGAAAC
1 TTTAAAAATCTCATCTTGAAAAGTTGTCTC-TAAACAAAGGCTTTGAAAC
* * * *
23396973 TTTAAAAATCTCATCCTGAAAAGTTGTTTCTGAACAAAGGTTTTGAAAC
1 TTTAAAAATCTCATCTTGAAAAGTTGTCTCTAAACAAAGGCTTTGAAAC
23397022 TTTAAAAATCTCATCTT
1 TTTAAAAATCTCATCTT
23397039 TGATTGGAAT
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
48 28 0.48
49 30 0.52
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.36
Consensus pattern (49 bp):
TTTAAAAATCTCATCTTGAAAAGTTGTCTCTAAACAAAGGCTTTGAAAC
Found at i:23397547 original size:11 final size:11
Alignment explanation
Indices: 23397531--23397570 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
23397521 CTTTCTTGGA
23397531 TTTCTTTATTT
1 TTTCTTTATTT
23397542 TTTCTTTATTT
1 TTTCTTTATTT
*
23397553 TTTCATTT-TTC
1 TTTC-TTTATTT
23397564 TTTCTTT
1 TTTCTTT
23397571 TCATTTTTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 3 0.11
11 21 0.78
12 3 0.11
ACGTcount: A:0.07, C:0.12, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTCTTTATTT
Found at i:23398272 original size:108 final size:108
Alignment explanation
Indices: 23398075--23398271 Score: 288
Period size: 108 Copynumber: 1.8 Consensus size: 108
23398065 ACATTTGATT
* * * * *
23398075 TACCTTTTCAAGTTTTTAACTTGGATAACCTTTTTGTGAGTTAGATCACTCTTTTTGAGTTTTCA
1 TACCTTTTCAAGTTTTCAACTTGGATAACCTTTTTATGACTCAGATAACTCTTTTTGAGTTTTCA
* *
23398140 ATCTTGGTCTTCTTTTCTTTTTTTTCCTTTTTTCTTATTGGGC
66 ATCTAGGTCATCTTTTCTTTTTTTTCCTTTTTTCTTATTGGGC
* * * *
23398183 TACCTTTTCAAGTTTTCAACTTGGATAACTTTTTTATGACTCAGATAATTTTTTTTGGGTTTTCA
1 TACCTTTTCAAGTTTTCAACTTGGATAACCTTTTTATGACTCAGATAACTCTTTTTGAGTTTTCA
23398248 ATCTAGGTCAT-TTTTCTTTTTTTT
66 ATCTAGGTCATCTTTTCTTTTTTTT
23398272 TTTTCTTTCT
Statistics
Matches: 78, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
107 13 0.17
108 65 0.83
ACGTcount: A:0.17, C:0.15, G:0.12, T:0.55
Consensus pattern (108 bp):
TACCTTTTCAAGTTTTCAACTTGGATAACCTTTTTATGACTCAGATAACTCTTTTTGAGTTTTCA
ATCTAGGTCATCTTTTCTTTTTTTTCCTTTTTTCTTATTGGGC
Found at i:23413701 original size:17 final size:17
Alignment explanation
Indices: 23413676--23413710 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
23413666 CCCTTCATTC
23413676 TTTTCTTTTTTTCTGTT
1 TTTTCTTTTTTTCTGTT
* *
23413693 TTTTTTTTTTTTTTGTT
1 TTTTCTTTTTTTCTGTT
23413710 T
1 T
23413711 AAATCGGATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.06, G:0.06, T:0.89
Consensus pattern (17 bp):
TTTTCTTTTTTTCTGTT
Found at i:23415180 original size:2 final size:2
Alignment explanation
Indices: 23415173--23415217 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
23415163 TCCTTTCCCT
23415173 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
23415215 TC T
1 TC T
23415218 ATCCATTCCC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:23415396 original size:17 final size:17
Alignment explanation
Indices: 23415376--23415418 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
23415366 ACAATAATTT
23415376 TTTTTAATTTGTGAAAA
1 TTTTTAATTTGTGAAAA
** *
23415393 TTTTTCCTTTGTTAAAA
1 TTTTTAATTTGTGAAAA
23415410 TTTTTAATT
1 TTTTTAATT
23415419 CTATTCTTTT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.28, C:0.05, G:0.07, T:0.60
Consensus pattern (17 bp):
TTTTTAATTTGTGAAAA
Found at i:23419360 original size:10 final size:10
Alignment explanation
Indices: 23419347--23419393 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
23419337 CTTTCTTTCC
23419347 TTTCCTTTTT
1 TTTCCTTTTT
23419357 TTT-CTTTTT
1 TTTCCTTTTT
* *
23419366 TTTTCTTTCT
1 TTTCCTTTTT
*
23419376 TTTCATTTTT
1 TTTCCTTTTT
23419386 TCTTCCTT
1 T-TTCCTT
23419394 CATACCGTAG
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
9 9 0.30
10 16 0.53
11 5 0.17
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTCCTTTTT
Done.