Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 148 of 190
Found at i:24010400 original size:24 final size:24
Alignment explanation
Indices: 24010338--24010401 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 24
24010328 TACAATATGC
*
24010338 AAATTTACAAAAATTCACATTTAAA
1 AAATTTA-AAAAATTCACATTCAAA
* * * *
24010363 AAATTTTAAGAATTCCCATTCAAG
1 AAATTTAAAAAATTCACATTCAAA
*
24010387 AAGTTTAAAAAATTC
1 AAATTTAAAAAATTC
24010402 TCACTTGAAA
Statistics
Matches: 31, Mismatches: 8, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
24 25 0.81
25 6 0.19
ACGTcount: A:0.50, C:0.12, G:0.05, T:0.33
Consensus pattern (24 bp):
AAATTTAAAAAATTCACATTCAAA
Found at i:24010540 original size:23 final size:22
Alignment explanation
Indices: 24010504--24010629 Score: 110
Period size: 23 Copynumber: 5.6 Consensus size: 22
24010494 TTTGCATTTG
* *
24010504 AAAAGTTCAAAGATTCTCATTT
1 AAAATTTCAAAGATTCTCATTC
* * * *
24010526 AAAACTTTTAGAGATTCTTATCC
1 AAAA-TTTCAAAGATTCTCATTC
24010549 AAAATTTCAAAGATT-TGCATTC
1 AAAATTTCAAAGATTCT-CATTC
* *
24010571 AAAAAGTTCAAAGATTCTCATTT
1 -AAAATTTCAAAGATTCTCATTC
* * *
24010594 AAAATTTTTAGAGATTCTCATCC
1 AAAA-TTTCAAAGATTCTCATTC
24010617 AAAATTTCAAAGA
1 AAAATTTCAAAGA
24010630 GTCACATTTG
Statistics
Matches: 80, Mismatches: 19, Indels: 10
0.73 0.17 0.09
Matches are distributed among these distances:
21 1 0.01
22 27 0.34
23 51 0.64
24 1 0.01
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.36
Consensus pattern (22 bp):
AAAATTTCAAAGATTCTCATTC
Found at i:24010578 original size:68 final size:68
Alignment explanation
Indices: 24010493--24010629 Score: 238
Period size: 68 Copynumber: 2.0 Consensus size: 68
24010483 GAACTAAAAT
** *
24010493 ATTTGCATTTGAAAAGTTCAAAGATTCTCATTTAAAACTTTTAGAGATTCTTATCCAAAATTTCA
1 ATTTGCATTCAAAAAGTTCAAAGATTCTCATTTAAAACTTTTAGAGATTCTCATCCAAAATTTCA
24010558 AAG
66 AAG
*
24010561 ATTTGCATTCAAAAAGTTCAAAGATTCTCATTTAAAATTTTTAGAGATTCTCATCCAAAATTTCA
1 ATTTGCATTCAAAAAGTTCAAAGATTCTCATTTAAAACTTTTAGAGATTCTCATCCAAAATTTCA
24010626 AAG
66 AAG
24010629 A
1 A
24010630 GTCACATTTG
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 65 1.00
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.37
Consensus pattern (68 bp):
ATTTGCATTCAAAAAGTTCAAAGATTCTCATTTAAAACTTTTAGAGATTCTCATCCAAAATTTCA
AAG
Found at i:24010644 original size:68 final size:68
Alignment explanation
Indices: 24010498--24010644 Score: 231
Period size: 68 Copynumber: 2.2 Consensus size: 68
24010488 AAAATATTTG
* *
24010498 CATTTGAAAAGTTCAAAGATTCTCATTTAAAACTTTTAGAGATTCTTATCCAAAATTTCAAAGAT
1 CATTTGAAAAGTTCAAAGATTCTCATTTAAAACTTTTAGAGATTCTCATCCAAAATTTCAAAGAG
**
24010563 TTG
66 TCA
** *
24010566 CATTCAAAAAGTTCAAAGATTCTCATTTAAAATTTTTAGAGATTCTCATCCAAAATTTCAAAGAG
1 CATTTGAAAAGTTCAAAGATTCTCATTTAAAACTTTTAGAGATTCTCATCCAAAATTTCAAAGAG
24010631 TCA
66 TCA
24010634 CATTTGAAAAG
1 CATTTGAAAAG
24010645 ATTCCAAACT
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
68 70 1.00
ACGTcount: A:0.40, C:0.14, G:0.10, T:0.35
Consensus pattern (68 bp):
CATTTGAAAAGTTCAAAGATTCTCATTTAAAACTTTTAGAGATTCTCATCCAAAATTTCAAAGAG
TCA
Found at i:24010685 original size:108 final size:108
Alignment explanation
Indices: 24010546--24010790 Score: 277
Period size: 108 Copynumber: 2.3 Consensus size: 108
24010536 GAGATTCTTA
*
24010546 TCCAAAATTTCAAAGATTTGCATTCAAAAAGTTCAAAGA-TTCTCATTT-AAAATTTTTAGAGAT
1 TCCAAAATTTCAAAGATTTACATTCAAAAAGTTCAAA-ATTTCTCATTTGAAAA-TTTTAGAGAT
* *
24010609 TCTCATCCAAAATTTCAAAGAGTCACATTTGAAAAGATTCCAAACT
64 TCTCATCCAAAA-TTCAAAAAGTCACATTTAAAAAGATTCCAAACT
** *
24010655 TCCAAAA-TTCAAAG-TTTCACATTTGAAAAGTTCAAAATTTTTCATTTGAAAATTTTAGAGATT
1 TCCAAAATTTCAAAGATTT-ACATTCAAAAAGTTCAAAATTTCTCATTTGAAAATTTTAGAGATT
* * * * * *
24010718 CTCATCTACAATTCAAAAATTCACATTTAAAAAAATTTC--ACA
65 CTCATCCAAAATTCAAAAAGTCACATTTAAAAAGATTCCAAACT
* * *
24010760 TCCAAACTTACAAAGATTCACATTCAAAAAG
1 TCCAAAATTTCAAAGATTTACATTCAAAAAG
24010791 ATTTCACATC
Statistics
Matches: 114, Mismatches: 17, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
105 8 0.07
106 16 0.14
107 29 0.25
108 50 0.44
109 11 0.10
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (108 bp):
TCCAAAATTTCAAAGATTTACATTCAAAAAGTTCAAAATTTCTCATTTGAAAATTTTAGAGATTC
TCATCCAAAATTCAAAAAGTCACATTTAAAAAGATTCCAAACT
Found at i:24010688 original size:23 final size:22
Alignment explanation
Indices: 24010658--24010708 Score: 66
Period size: 23 Copynumber: 2.3 Consensus size: 22
24010648 CCAAACTTCC
*
24010658 AAAATTCAAAGTTTCACATTTG
1 AAAATTCAAAATTTCACATTTG
**
24010680 AAAAGTTCAAAATTTTTCATTTG
1 AAAA-TTCAAAATTTCACATTTG
24010703 AAAATT
1 AAAATT
24010709 TTAGAGATTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 6 0.24
23 19 0.76
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39
Consensus pattern (22 bp):
AAAATTCAAAATTTCACATTTG
Found at i:24010843 original size:37 final size:37
Alignment explanation
Indices: 24010729--24010859 Score: 190
Period size: 37 Copynumber: 3.5 Consensus size: 37
24010719 TCATCTACAA
*
24010729 TTCAAAAATTCACATTTAAAAAAATTTCACATCCAAAC
1 TTCAAAGATTCACATTT-AAAAAATTTCACATCCAAAC
* *
24010767 TTACAAAGATTCACATTCAAAAAGATTTCACATCTAAAC
1 TT-CAAAGATTCACATTTAAAAA-ATTTCACATCCAAAC
*
24010806 TTCAAAGATTCACATTTAAAAATTTTCACATCCAAAC
1 TTCAAAGATTCACATTTAAAAAATTTCACATCCAAAC
*
24010843 TTCAAAGATTCATATTT
1 TTCAAAGATTCACATTT
24010860 GAGAAGTTCA
Statistics
Matches: 84, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
37 29 0.35
38 26 0.31
39 29 0.35
ACGTcount: A:0.45, C:0.20, G:0.03, T:0.32
Consensus pattern (37 bp):
TTCAAAGATTCACATTTAAAAAATTTCACATCCAAAC
Found at i:24010870 original size:60 final size:61
Alignment explanation
Indices: 24010806--24010932 Score: 195
Period size: 61 Copynumber: 2.1 Consensus size: 61
24010796 ACATCTAAAC
* *
24010806 TTCAAAGATTCACA-TTTAAAA-ATTTTCACATCCAAACTTCAAAGATTCATATTTGAGAAG
1 TTCAAAGATTCACATTTTAAAAGA-TTTCACATCCAAAATTCAAAGATTCATATTTGAAAAG
* *
24010866 TTCAAAGATTCACATTTTAAAAGATTTCACATCCAAAATTCGAATATTCATATTTGAAAAG
1 TTCAAAGATTCACATTTTAAAAGATTTCACATCCAAAATTCAAAGATTCATATTTGAAAAG
24010927 TTCAAA
1 TTCAAA
24010933 TCTAAAATTC
Statistics
Matches: 61, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
60 14 0.23
61 46 0.75
62 1 0.02
ACGTcount: A:0.43, C:0.16, G:0.08, T:0.34
Consensus pattern (61 bp):
TTCAAAGATTCACATTTTAAAAGATTTCACATCCAAAATTCAAAGATTCATATTTGAAAAG
Found at i:24011475 original size:46 final size:47
Alignment explanation
Indices: 24011425--24011530 Score: 151
Period size: 50 Copynumber: 2.2 Consensus size: 47
24011415 CTCACCAAAA
*
24011425 GATGCAAATGCAAGGTCT-AATTATGCAGTTTATAAATTCCTTAAAT
1 GATGCAAATGCAAGATCTAAATTATGCAGTTTATAAATTCCTTAAAT
* *
24011471 GATGCAAATGCATGATCTAAACAATTATGTAGTTTATAAATTCCTTAAAT
1 GATGCAAATGCAAGATCT--A-AATTATGCAGTTTATAAATTCCTTAAAT
24011521 GATGCAAATG
1 GATGCAAATG
24011531 TATAATCCAA
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
46 16 0.30
50 37 0.70
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (47 bp):
GATGCAAATGCAAGATCTAAATTATGCAGTTTATAAATTCCTTAAAT
Found at i:24011510 original size:50 final size:50
Alignment explanation
Indices: 24011443--24011546 Score: 172
Period size: 50 Copynumber: 2.1 Consensus size: 50
24011433 TGCAAGGTCT
* *
24011443 AATTATGCAGTTTATAAATTCCTTAAATGATGCAAATGCATGATCTAAAC
1 AATTATGCAGTTTATAAATTCCTTAAATGATGCAAATGCATAATCCAAAC
* *
24011493 AATTATGTAGTTTATAAATTCCTTAAATGATGCAAATGTATAATCCAAAC
1 AATTATGCAGTTTATAAATTCCTTAAATGATGCAAATGCATAATCCAAAC
24011543 AATT
1 AATT
24011547 GTGAAAATGT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.36
Consensus pattern (50 bp):
AATTATGCAGTTTATAAATTCCTTAAATGATGCAAATGCATAATCCAAAC
Found at i:24012628 original size:32 final size:32
Alignment explanation
Indices: 24012571--24012634 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 32
24012561 ACTTTTCATC
*
24012571 TTTCTTTTTTCATTTCTTTCATTTCATTTTTT
1 TTTCTTTTTTCATTTCTTTCATTTCATGTTTT
*
24012603 TTTC-TTTTTCTTTTCTTCTTC-TTTCATGTTTT
1 TTTCTTTTTTCATTTC-T-TTCATTTCATGTTTT
24012635 CACTTTTTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
31 10 0.36
32 15 0.54
33 3 0.11
ACGTcount: A:0.06, C:0.17, G:0.02, T:0.75
Consensus pattern (32 bp):
TTTCTTTTTTCATTTCTTTCATTTCATGTTTT
Found at i:24014140 original size:134 final size:134
Alignment explanation
Indices: 24013852--24014328 Score: 652
Period size: 135 Copynumber: 3.5 Consensus size: 134
24013842 TGTGCAAATA
* *
24013852 TATGCAATACATAGTAACAACAAGAATTCATATTTAAAACTATGTACAAAACTAAAAAAGGCAAA
1 TATGCAATACATAGTAACAACAAGAATTCATATTCAAAACTATGTACAAAACT-AAAAAGACAAA
* * * * *
24013917 AATTCTCCTTAAACAAATGAAATAATGTACATAAACAAATATTTAGATGGATAAAAATGCATATG
65 AATTCTCCCTAAGC-AA-G---TAATGTACATACACAAATATTTACATGGATAAAAATGTATATG
24013982 CAAATACATG
125 CAAATACATG
* *
24013992 TATGCAATACATAGTAACACCAAGAATTCATATTCAAAACTATGTACAAAACTAAAAAGACAAAG
1 TATGCAATACATAGTAACAACAAGAATTCATATTCAAAACTATGTACAAAACTAAAAAGACAAAA
* *
24014057 ATTCTCCCTAAGCAAGCAATGTACATACACAAATATTTACATAGATAAAAATGTATATGCAAATA
66 ATTCTCCCTAAGCAAGTAATGTACATACACAAATATTTACATGGATAAAAATGTATATGCAAATA
24014122 CATG
131 CATG
*
24014126 TATGCAATACATAGTAACAACAAGAATTCATATTCAAAACTATGTACAAAACTAAAAA-ATATTA
1 TATGCAATACATAGTAACAACAAGAATTCATATTCAAAACTATGTACAAAACTAAAAAGACA--A
* * * * * *
24014190 ATATTCCCCCCAAGCAAATAATGTGCA-AGCACAGATATTTACATGGATAAAAATGTATATGCAA
64 AAATTCTCCCTAAGCAAGTAATGTACATA-CACAAATATTTACATGGATAAAAATGTATATGCAA
24014254 ATACATG
128 ATACATG
* * * * *
24014261 TATGCAATACATAGTAAAAACAATAATTCATATTCAAAACTATGTACCAAACTAAAATGACTAAA
1 TATGCAATACATAGTAACAACAAGAATTCATATTCAAAACTATGTACAAAACTAAAAAGACAAAA
24014326 ATT
66 ATT
24014329 GCCCCAAAAA
Statistics
Matches: 305, Mismatches: 28, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
133 2 0.01
134 111 0.36
135 116 0.38
136 1 0.00
137 1 0.00
138 2 0.01
139 21 0.07
140 51 0.17
ACGTcount: A:0.49, C:0.15, G:0.09, T:0.26
Consensus pattern (134 bp):
TATGCAATACATAGTAACAACAAGAATTCATATTCAAAACTATGTACAAAACTAAAAAGACAAAA
ATTCTCCCTAAGCAAGTAATGTACATACACAAATATTTACATGGATAAAAATGTATATGCAAATA
CATG
Found at i:24014283 original size:135 final size:133
Alignment explanation
Indices: 24013852--24014336 Score: 632
Period size: 134 Copynumber: 3.6 Consensus size: 133
24013842 TGTGCAAATA
*
24013852 TATGCAATACATAGTAACAACAAGAATTCATATTTAAAACTATGTACAAAACTAAAAAAGGCAAA
1 TATGCAATACATAGTAACAACAAGAATTCATATTCAAAACTATGTACAAAACTAAAAAA--CAAA
* * * *
24013917 AATTCTCCTTAAACAAATG-AAATAATGTACATAAACAAATATTTAGATGGATAAAAATGCATAT
64 AATTC-CC----CCAAA-GCAAATAATGTACATACACAAATATTTACATGGATAAAAATGTATAT
24013981 GCAAATACATG
123 GCAAATACATG
* *
24013992 TATGCAATACATAGTAACACCAAGAATTCATATTCAAAACTATGTACAAAACTAAAAAGACAAAG
1 TATGCAATACATAGTAACAACAAGAATTCATATTCAAAACTATGTACAAAACTAAAAA-ACAAAA
* * ** *
24014057 ATTCTCCCTAAGCAAGCAATGTACATACACAAATATTTACATAGATAAAAATGTATATGCAAATA
65 ATTCCCCCAAAGCAAATAATGTACATACACAAATATTTACATGGATAAAAATGTATATGCAAATA
24014122 CATG
130 CATG
*
24014126 TATGCAATACATAGTAACAACAAGAATTCATATTCAAAACTATGTACAAAACTAAAAAATATTAA
1 TATGCAATACATAGTAACAACAAGAATTCATATTCAAAACTATGTACAAAACTAAAAAACA--AA
* * * *
24014191 TATTCCCCCCAAGCAAATAATGTGCA-AGCACAGATATTTACATGGATAAAAATGTATATGCAAA
64 AATTCCCCCAAAGCAAATAATGTACATA-CACAAATATTTACATGGATAAAAATGTATATGCAAA
24014255 TACATG
128 TACATG
* * * * *
24014261 TATGCAATACATAGTAAAAACAATAATTCATATTCAAAACTATGTACCAAACTAAAATGACTAAA
1 TATGCAATACATAGTAACAACAAGAATTCATATTCAAAACTATGTACAAAACTAAAA-AACAAAA
*
24014326 ATTGCCCCAAA
65 ATTCCCCCAAA
24014337 AAAAAATGAA
Statistics
Matches: 308, Mismatches: 31, Indels: 18
0.86 0.09 0.05
Matches are distributed among these distances:
133 3 0.01
134 122 0.40
135 116 0.38
136 1 0.00
138 1 0.00
139 8 0.03
140 56 0.18
141 1 0.00
ACGTcount: A:0.49, C:0.16, G:0.09, T:0.25
Consensus pattern (133 bp):
TATGCAATACATAGTAACAACAAGAATTCATATTCAAAACTATGTACAAAACTAAAAAACAAAAA
TTCCCCCAAAGCAAATAATGTACATACACAAATATTTACATGGATAAAAATGTATATGCAAATAC
ATG
Found at i:24015379 original size:32 final size:33
Alignment explanation
Indices: 24015343--24015405 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
24015333 ATAGCATGCA
* *
24015343 ATCATGTAATAA-ATTAAATACCATGCAAAATT
1 ATCATGCAATAATATAAAATACCATGCAAAATT
* *
24015375 ATCATGCAATAATATAAAATATCATGTAAAA
1 ATCATGCAATAATATAAAATACCATGCAAAA
24015406 ATAATTATGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
32 11 0.42
33 15 0.58
ACGTcount: A:0.52, C:0.11, G:0.06, T:0.30
Consensus pattern (33 bp):
ATCATGCAATAATATAAAATACCATGCAAAATT
Found at i:24015408 original size:20 final size:21
Alignment explanation
Indices: 24015369--24015408 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
24015359 AATACCATGC
*
24015369 AAAATTATCATGCAATAATAT
1 AAAATTATCATGCAAAAATAT
*
24015390 AAAA-TATCATGTAAAAATA
1 AAAATTATCATGCAAAAATA
24015409 ATTATGAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.57, C:0.07, G:0.05, T:0.30
Consensus pattern (21 bp):
AAAATTATCATGCAAAAATAT
Found at i:24015482 original size:9 final size:9
Alignment explanation
Indices: 24015468--24015497 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
24015458 AATTTAAGAG
24015468 AATAAAATA
1 AATAAAATA
24015477 AATAAAATA
1 AATAAAATA
24015486 AAT-AAATA
1 AATAAAATA
24015494 AATA
1 AATA
24015498 CGAAAAAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (9 bp):
AATAAAATA
Found at i:24021282 original size:9 final size:9
Alignment explanation
Indices: 24021254--24021293 Score: 55
Period size: 9 Copynumber: 4.3 Consensus size: 9
24021244 ATTTCGCTTG
24021254 AAAATAAAA
1 AAAATAAAA
24021263 GAAAA-AGAAA
1 -AAAATA-AAA
24021273 AAAATAAAA
1 AAAATAAAA
24021282 AAAATAAAA
1 AAAATAAAA
24021291 AAA
1 AAA
24021294 CCCAAAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
9 20 0.71
10 8 0.29
ACGTcount: A:0.88, C:0.00, G:0.05, T:0.07
Consensus pattern (9 bp):
AAAATAAAA
Found at i:24021292 original size:19 final size:19
Alignment explanation
Indices: 24021254--24021293 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
24021244 ATTTCGCTTG
*
24021254 AAAATAAAAGAAAAAGAAA
1 AAAATAAAAGAAAAAAAAA
24021273 AAAATAAAA-AAAATAAAAA
1 AAAATAAAAGAAAA-AAAAA
24021292 AA
1 AA
24021294 CCCAAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.88, C:0.00, G:0.05, T:0.07
Consensus pattern (19 bp):
AAAATAAAAGAAAAAAAAA
Found at i:24022587 original size:9 final size:9
Alignment explanation
Indices: 24022573--24022607 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
24022563 ACAATTTATG
24022573 AATTAAAAA
1 AATTAAAAA
24022582 AATT-AAAA
1 AATTAAAAA
24022590 AATTAAAAA
1 AATTAAAAA
*
24022599 AATGAAAAA
1 AATTAAAAA
24022608 CAAAACAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
8 8 0.33
9 16 0.67
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (9 bp):
AATTAAAAA
Found at i:24022593 original size:17 final size:17
Alignment explanation
Indices: 24022573--24022607 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
24022563 ACAATTTATG
*
24022573 AATTAAAAAAATTAAAA
1 AATTAAAAAAATGAAAA
24022590 AATTAAAAAAATGAAAA
1 AATTAAAAAAATGAAAA
24022607 A
1 A
24022608 CAAAACAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (17 bp):
AATTAAAAAAATGAAAA
Found at i:24022955 original size:3 final size:3
Alignment explanation
Indices: 24022949--24022993 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
24022939 CATTAAATGC
24022949 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
24022994 TTAAAATAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:24025044 original size:13 final size:13
Alignment explanation
Indices: 24025026--24025072 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
24025016 ACCTTCAAAC
24025026 CCTAAAATGAAAT
1 CCTAAAATGAAAT
*
24025039 CCTAAAACTAAAAT
1 CCTAAAA-TGAAAT
* *
24025053 GCT-AAATGAAAC
1 CCTAAAATGAAAT
24025065 CCTAAAAT
1 CCTAAAAT
24025073 CAAAACCTTA
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
12 6 0.22
13 14 0.52
14 7 0.26
ACGTcount: A:0.53, C:0.19, G:0.06, T:0.21
Consensus pattern (13 bp):
CCTAAAATGAAAT
Found at i:24025046 original size:21 final size:20
Alignment explanation
Indices: 24024998--24025046 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
24024988 TTGTAAAAAA
24024998 CTAAAAGCCCT-AAATGAAAC
1 CTAAAA-CCCTAAAATGAAAC
*
24025018 CTTCAAACCCTAAAATGAAATC
1 C-TAAAACCCTAAAATGAAA-C
24025040 CTAAAAC
1 CTAAAAC
24025047 TAAAATGCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
20 5 0.21
21 17 0.71
22 2 0.08
ACGTcount: A:0.49, C:0.27, G:0.06, T:0.18
Consensus pattern (20 bp):
CTAAAACCCTAAAATGAAAC
Found at i:24025084 original size:26 final size:26
Alignment explanation
Indices: 24025020--24025084 Score: 62
Period size: 26 Copynumber: 2.5 Consensus size: 26
24025010 AATGAAACCT
* * *
24025020 TCAAACCCTAAAATGAAATCCTAAAA
1 TCAAAACCTTAAATGAAACCCTAAAA
*
24025046 -CTAAAATGC-TAAATGAAACCCTAAAA
1 TC-AAAA-CCTTAAATGAAACCCTAAAA
24025072 TCAAAACCTTAAA
1 TCAAAACCTTAAA
24025085 CTTACCCAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 8
0.70 0.12 0.19
Matches are distributed among these distances:
25 2 0.07
26 26 0.87
27 2 0.07
ACGTcount: A:0.54, C:0.22, G:0.05, T:0.20
Consensus pattern (26 bp):
TCAAAACCTTAAATGAAACCCTAAAA
Found at i:24025259 original size:23 final size:23
Alignment explanation
Indices: 24025232--24025275 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
24025222 TTTGTATTAA
*
24025232 AATAATAATAA-AATTAAATAAAG
1 AATAATAA-AATAATAAAATAAAG
24025255 AATAATAAAATAATAAAATAA
1 AATAATAAAATAATAAAATAA
24025276 GATTTTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (23 bp):
AATAATAAAATAATAAAATAAAG
Found at i:24025268 original size:8 final size:8
Alignment explanation
Indices: 24025229--24025275 Score: 53
Period size: 8 Copynumber: 6.0 Consensus size: 8
24025219 ATTTTTGTAT
24025229 TAAAATAA
1 TAAAATAA
24025237 TAATAA-AA
1 TAA-AATAA
*
24025245 TTAAATAA
1 TAAAATAA
*
24025253 -AGAATAA
1 TAAAATAA
24025260 TAAAATAA
1 TAAAATAA
24025268 TAAAATAA
1 TAAAATAA
24025276 GATTTTAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
7 7 0.22
8 23 0.72
9 2 0.06
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (8 bp):
TAAAATAA
Found at i:24026259 original size:52 final size:52
Alignment explanation
Indices: 24026198--24026320 Score: 160
Period size: 52 Copynumber: 2.3 Consensus size: 52
24026188 ACTTCATTTA
* *
24026198 TGAATCTTTGTAAATTTTGAAATCTTT-TGAATTTTGA-GATCTTTACAAATCT
1 TGAATCTTTGCAAATCTTGAAATCTTTATGAATTTTGATG--CTTTACAAATCT
* *
24026250 TGAATCTTTGCAAATCTTGAAATGTTTATGAATTTTGATGCTTTGCAAATCT
1 TGAATCTTTGCAAATCTTGAAATCTTTATGAATTTTGATGCTTTACAAATCT
*
24026302 TGAAATCTTTGCGAATCTT
1 TG-AATCTTTGCAAATCTT
24026321 ACGAATCTTG
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
52 37 0.59
53 25 0.40
54 1 0.02
ACGTcount: A:0.29, C:0.11, G:0.14, T:0.46
Consensus pattern (52 bp):
TGAATCTTTGCAAATCTTGAAATCTTTATGAATTTTGATGCTTTACAAATCT
Found at i:24026265 original size:10 final size:9
Alignment explanation
Indices: 24026200--24026272 Score: 50
Period size: 9 Copynumber: 8.3 Consensus size: 9
24026190 TTCATTTATG
24026200 AATCTTTGTA
1 AATCTTTG-A
24026210 AAT-TTTGA
1 AATCTTTGA
24026218 AATCTTTTG-
1 AATC-TTTGA
24026227 AAT-TTTGA
1 AATCTTTGA
* *
24026235 GATCTTTACA
1 AATCTTT-GA
24026245 AATC-TTG-
1 AATCTTTGA
24026252 AATCTTTGCA
1 AATCTTTG-A
24026262 AATC-TTGA
1 AATCTTTGA
24026270 AAT
1 AAT
24026273 GTTTATGAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 18
0.70 0.05 0.25
Matches are distributed among these distances:
7 8 0.16
8 13 0.25
9 15 0.29
10 15 0.29
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.45
Consensus pattern (9 bp):
AATCTTTGA
Found at i:24026313 original size:18 final size:18
Alignment explanation
Indices: 24026200--24026320 Score: 90
Period size: 17 Copynumber: 6.9 Consensus size: 18
24026190 TTCATTTATG
* *
24026200 AATCTTTGTAAATTTTGA
1 AATCTTTGCAAATCTTGA
*
24026218 AATCTTTTG--AATTTTGA
1 AATC-TTTGCAAATCTTGA
* *
24026235 GATCTTTACAAATCTTG-
1 AATCTTTGCAAATCTTGA
24026252 AATCTTTGCAAATCTTGA
1 AATCTTTGCAAATCTTGA
* *** *
24026270 AATGTTTATGAATTTTG-
1 AATCTTTGCAAATCTTGA
24026287 -ATGCTTTGCAAATCTTGA
1 AAT-CTTTGCAAATCTTGA
*
24026305 AATCTTTGCGAATCTT
1 AATCTTTGCAAATCTT
24026321 ACGAATCTTG
Statistics
Matches: 80, Mismatches: 16, Indels: 14
0.73 0.15 0.13
Matches are distributed among these distances:
16 5 0.06
17 35 0.44
18 34 0.43
19 6 0.08
ACGTcount: A:0.30, C:0.12, G:0.13, T:0.45
Consensus pattern (18 bp):
AATCTTTGCAAATCTTGA
Found at i:24026353 original size:18 final size:18
Alignment explanation
Indices: 24026330--24026365 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
24026320 TACGAATCTT
24026330 GAACCTTTGTGAATGTTG
1 GAACCTTTGTGAATGTTG
24026348 GAACCTTTGTGAATGTTG
1 GAACCTTTGTGAATGTTG
24026366 AAATATTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.11, G:0.28, T:0.39
Consensus pattern (18 bp):
GAACCTTTGTGAATGTTG
Found at i:24037071 original size:33 final size:32
Alignment explanation
Indices: 24037003--24037077 Score: 96
Period size: 33 Copynumber: 2.3 Consensus size: 32
24036993 TCAACACTGG
* *
24037003 TTGAATTTTTCGACATCGAAATTTGAAAAAGT
1 TTGAATTTTTCGACACCGAAATTTGAAAAACT
** *
24037035 TTGAATTTTTCGACCACCGAAATTTGAGGATCT
1 TTGAATTTTTCGA-CACCGAAATTTGAAAAACT
24037068 TTGAATTTTT
1 TTGAATTTTT
24037078 TGATGCTGTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
32 13 0.35
33 24 0.65
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.41
Consensus pattern (32 bp):
TTGAATTTTTCGACACCGAAATTTGAAAAACT
Found at i:24037403 original size:3 final size:3
Alignment explanation
Indices: 24037397--24037434 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
24037387 TTTATGATGC
*
24037397 TAT TAT TAT TAT TAT TAT TGT TAT T-T TA- TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
24037435 GGTAATAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 4 0.13
3 27 0.87
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:24045784 original size:24 final size:24
Alignment explanation
Indices: 24045752--24045801 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
24045742 GGTACTTCAA
24045752 TGTCATCACCAATAAAGCAAGAGT
1 TGTCATCACCAATAAAGCAAGAGT
24045776 TGTCATCACCAATAAAGCAAGAGT
1 TGTCATCACCAATAAAGCAAGAGT
24045800 TG
1 TG
24045802 ATAAAGTTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.22
Consensus pattern (24 bp):
TGTCATCACCAATAAAGCAAGAGT
Found at i:24047961 original size:30 final size:30
Alignment explanation
Indices: 24047922--24047978 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
24047912 ATTTATATAT
* * *
24047922 ATATATATATTTATATAATGATATTTTTAA
1 ATATATATATTTAAAAAATAATATTTTTAA
*
24047952 ATATTTATATTTAAAAAATAATATTTT
1 ATATATATATTTAAAAAATAATATTTT
24047979 ATATTTTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (30 bp):
ATATATATATTTAAAAAATAATATTTTTAA
Found at i:24047981 original size:21 final size:22
Alignment explanation
Indices: 24047951--24048001 Score: 81
Period size: 21 Copynumber: 2.5 Consensus size: 22
24047941 GATATTTTTA
24047951 AATA-TTTATA-TTTAAAAAAT
1 AATATTTTATATTTTAAAAAAT
24047971 AATATTTTATATTTTAAAAAAT
1 AATATTTTATATTTTAAAAAAT
24047993 -ATATTTTAT
1 AATATTTTAT
24048002 TAATTTCAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
20 4 0.14
21 15 0.52
22 10 0.34
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
AATATTTTATATTTTAAAAAAT
Found at i:24050564 original size:39 final size:39
Alignment explanation
Indices: 24050518--24050814 Score: 287
Period size: 39 Copynumber: 7.6 Consensus size: 39
24050508 ATCTTTTAAC
*
24050518 ATTTAAAGTTTGTTGCCTTTGGTTAAATGAGCTTTTTGA
1 ATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTTGA
* * * * * * * *
24050557 ATTTAAAGTTTATTACCTCTAGTGAGAGAAGC-CTTTGAA
1 ATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTTG-A
*
24050596 ATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTAT-C
1 ATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTT-TGA
* * * * * * * *
24050635 ATCTAAAATTTGTTGCCTTTAGTGAGAGAAGCCTTTTAA
1 ATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTTGA
*
24050674 CATTTAAAGTTTGTTACCTTTGGTTAAAGGAGCTTTTTGA
1 -ATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTTGA
* * * *
24050714 ATTTAAAGTTTGTTGCCTCTGGTGAGAGGAGC-CTTTGAA
1 ATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTTG-A
*
24050753 ATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTAT-C
1 ATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTT-TGA
* *
24050792 ATTTAAAGTTTATTACCTTTGGT
1 ATTTAAAGTTTGTTGCCTTTGGT
24050815 AAGAAGAGCC
Statistics
Matches: 203, Mismatches: 47, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
38 9 0.04
39 158 0.78
40 34 0.17
41 2 0.01
ACGTcount: A:0.26, C:0.11, G:0.20, T:0.43
Consensus pattern (39 bp):
ATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTTGA
Found at i:24050658 original size:78 final size:79
Alignment explanation
Indices: 24050510--24050839 Score: 427
Period size: 78 Copynumber: 4.2 Consensus size: 79
24050500 CCTTTAAGAT
* *
24050510 CTTTTAACATTTAAAGTTTGTTGCCTTTGGTTAAATGAGCTTTTTGAATTTAAAGTTTATTACCT
1 CTTTGAACATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTTGAATTTAAAGTTTATTACCT
24050575 CTAGTGAGAGAAGC
66 CTAGTGAGAGAAGC
* * * * *
24050589 CTTTGAA-ATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTAT-CATCTAAAATTTGTTGCC
1 CTTTGAACATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTT-TGAATTTAAAGTTTATTACC
*
24050652 TTTAGTGAGAGAAGC
65 TCTAGTGAGAGAAGC
* * * *
24050667 CTTTTAACATTTAAAGTTTGTTACCTTTGGTTAAAGGAGCTTTTTGAATTTAAAGTTTGTTGCCT
1 CTTTGAACATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTTGAATTTAAAGTTTATTACCT
* *
24050732 CTGGTGAGAGGAGC
66 CTAGTGAGAGAAGC
*
24050746 CTTTGAA-ATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTAT-CATTTAAAGTTTATTACC
1 CTTTGAACATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTT-TGAATTTAAAGTTTATTACC
* * *
24050809 TTTGGTAAGA-AGAGC
65 TCTAGTGAGAGA-AGC
*
24050824 CTTTTAACATTTAAAG
1 CTTTGAACATTTAAAG
24050840 AGCCTTTTAA
Statistics
Matches: 220, Mismatches: 25, Indels: 12
0.86 0.10 0.05
Matches are distributed among these distances:
78 136 0.62
79 84 0.38
ACGTcount: A:0.27, C:0.11, G:0.19, T:0.42
Consensus pattern (79 bp):
CTTTGAACATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTTGAATTTAAAGTTTATTACCT
CTAGTGAGAGAAGC
Found at i:24050811 original size:157 final size:157
Alignment explanation
Indices: 24050510--24050839 Score: 536
Period size: 157 Copynumber: 2.1 Consensus size: 157
24050500 CCTTTAAGAT
* *
24050510 CTTTTAACATTTAAAGTTTGTTGCCTTTGGTTAAATGAGCTTTTTGAATTTAAAGTTTATTACCT
1 CTTTTAACATTTAAAGTTTGTTACCTTTGGTTAAAGGAGCTTTTTGAATTTAAAGTTTATTACCT
24050575 CTAGTGAGAGAAGCCTTTGAAATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTATCATCTA
66 CTAGTGAGAGAAGCCTTTGAAATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTATCATCTA
* * *
24050640 AAATTTGTTGCCTTTAGTGAG-AGAAGC
131 AAATTTATTACCTTTAGTAAGAAG-AGC
* *
24050667 CTTTTAACATTTAAAGTTTGTTACCTTTGGTTAAAGGAGCTTTTTGAATTTAAAGTTTGTTGCCT
1 CTTTTAACATTTAAAGTTTGTTACCTTTGGTTAAAGGAGCTTTTTGAATTTAAAGTTTATTACCT
* * *
24050732 CTGGTGAGAGGAGCCTTTGAAATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTATCATTTA
66 CTAGTGAGAGAAGCCTTTGAAATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTATCATCTA
* *
24050797 AAGTTTATTACCTTTGGTAAGAAGAGC
131 AAATTTATTACCTTTAGTAAGAAGAGC
24050824 CTTTTAACATTTAAAG
1 CTTTTAACATTTAAAG
24050840 AGCCTTTTAA
Statistics
Matches: 160, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
157 158 0.99
158 2 0.01
ACGTcount: A:0.27, C:0.11, G:0.19, T:0.42
Consensus pattern (157 bp):
CTTTTAACATTTAAAGTTTGTTACCTTTGGTTAAAGGAGCTTTTTGAATTTAAAGTTTATTACCT
CTAGTGAGAGAAGCCTTTGAAATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTATCATCTA
AAATTTATTACCTTTAGTAAGAAGAGC
Found at i:24050842 original size:19 final size:19
Alignment explanation
Indices: 24050818--24050858 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
24050808 CTTTGGTAAG
24050818 AAGAGCCTTTTAACATTTA
1 AAGAGCCTTTTAACATTTA
24050837 AAGAGCCTTTTAACATTTA
1 AAGAGCCTTTTAACATTTA
24050856 AAG
1 AAG
24050859 TTTGTTGCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.34
Consensus pattern (19 bp):
AAGAGCCTTTTAACATTTA
Found at i:24050881 original size:137 final size:136
Alignment explanation
Indices: 24050697--24050976 Score: 339
Period size: 137 Copynumber: 2.0 Consensus size: 136
24050687 TTACCTTTGG
* * *
24050697 TTAAAGGAGCTTTTTGAATTTAAAGTTTGTTGCCTCTGGTGAGAGGAGC-CTTTGAAATTTAAAG
1 TTAAA-GAGCCTTTTAAATTTAAAGTTTGTTGCCTCTGGTGACAGGAGCTCTTTG-AATTTAAAG
* * * * * ** * *
24050761 TTTGTTGCCTTTGGTTAAAGGAGCTTTTATCATTTAAAGTTTATTACCTTTGGTAAGAAGAGCCT
64 TTTGTTGCCTCTGATGAAAGCAGCCTTTAAAATTTAAAGTTTATTACCTCTGGTAAGAAGA-ACT
24050826 TTTAACA-T
128 TTTAACATT
* * *
24050834 TTAAAGAGCCTTTTAACATTTAAAGTTTGTTGCTTCTGGTTACAGGAGCTTTTTGAATTTAAAGT
1 TTAAAGAGCCTTTTAA-ATTTAAAGTTTGTTGCCTCTGGTGACAGGAGCTCTTTGAATTTAAAGT
* * *
24050899 TTGTTGCCTCTGATGAGAGCAGCCTTTAAAATTTAAAGTTTGTTGCCTCTGGTAAGAAGAACTTT
65 TTGTTGCCTCTGATGAAAGCAGCCTTTAAAATTTAAAGTTTATTACCTCTGGTAAGAAGAACTTT
*
24050964 TAATATT
130 TAACATT
24050971 TTAAAG
1 TTAAAG
24050977 TTTGTTGCAT
Statistics
Matches: 121, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
136 17 0.14
137 100 0.83
138 4 0.03
ACGTcount: A:0.28, C:0.11, G:0.20, T:0.41
Consensus pattern (136 bp):
TTAAAGAGCCTTTTAAATTTAAAGTTTGTTGCCTCTGGTGACAGGAGCTCTTTGAATTTAAAGTT
TGTTGCCTCTGATGAAAGCAGCCTTTAAAATTTAAAGTTTATTACCTCTGGTAAGAAGAACTTTT
AACATT
Found at i:24050897 original size:39 final size:39
Alignment explanation
Indices: 24050851--24051094 Score: 229
Period size: 39 Copynumber: 6.2 Consensus size: 39
24050841 GCCTTTTAAC
* * *
24050851 ATTTAAAGTTTGTTGCTTCTGGTTACAGGAGCTTTTTGA
1 ATTTAAAGTTTGTTGCCTCTGGTGAGAGGAGCTTTTTGA
* * * **
24050890 ATTTAAAGTTTGTTGCCTCTGATGAGAGCAGCCTTTAAA
1 ATTTAAAGTTTGTTGCCTCTGGTGAGAGGAGCTTTTTGA
* * *
24050929 ATTTAAAGTTTGTTGCCTCTGGTAAGAAGAACTTTTAAT-A
1 ATTTAAAGTTTGTTGCCTCTGGTGAGAGGAGCTTTT--TGA
* * * * * *
24050969 TTTTAAAGTTTGTTGCATTTGGTTAAAGAAGCTTTTTGA
1 ATTTAAAGTTTGTTGCCTCTGGTGAGAGGAGCTTTTTGA
* * * * **
24051008 ATTTAAACTTTTTTACCTTTGGTGAGAGGAGCTTTTTTT
1 ATTTAAAGTTTGTTGCCTCTGGTGAGAGGAGCTTTTTGA
* * *
24051047 ATTTAAAATTTGTTGCCTCTGGTGGGAGGAGCTTTTTTA
1 ATTTAAAGTTTGTTGCCTCTGGTGAGAGGAGCTTTTTGA
24051086 ATTTAAAGT
1 ATTTAAAGT
24051095 GTCATAGCCT
Statistics
Matches: 162, Mismatches: 40, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
38 1 0.01
39 132 0.81
40 29 0.18
ACGTcount: A:0.25, C:0.10, G:0.20, T:0.44
Consensus pattern (39 bp):
ATTTAAAGTTTGTTGCCTCTGGTGAGAGGAGCTTTTTGA
Found at i:24050923 original size:98 final size:96
Alignment explanation
Indices: 24050742--24050936 Score: 243
Period size: 98 Copynumber: 2.0 Consensus size: 96
24050732 CTGGTGAGAG
*
24050742 GAGCCTTTGAAATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTATCATTTAAAGTTTATTA
1 GAGCCTTTGAAATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTATAATTTAAAGTTTATTA
* * *
24050807 CCTTTGGTAAGAAGAGCCTTTTAACATTTAAA
66 CCTCTGATAAGAAGAGCC-TTTAAAATTTAAA
* * *
24050839 GAGCCTTTTAACATTTAAAGTTTGTTG-CTTCTGGTTACAGGAGCTTTT-TGAATTTAAAGTTTG
1 GAGCCTTTGAA-ATTTAAAGTTTGTTGCCTT-TGGTTAAAGGAGCTTTTAT-AATTTAAAGTTTA
* *
24050902 TTGCCTCTGATGAG-AGCAGCCTTTAAAATTTAAA
63 TTACCTCTGATAAGAAG-AGCCTTTAAAATTTAAA
24050936 G
1 G
24050937 TTTGTTGCCT
Statistics
Matches: 85, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
97 29 0.34
98 56 0.66
ACGTcount: A:0.28, C:0.12, G:0.19, T:0.41
Consensus pattern (96 bp):
GAGCCTTTGAAATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTATAATTTAAAGTTTATTA
CCTCTGATAAGAAGAGCCTTTAAAATTTAAA
Found at i:24051014 original size:176 final size:176
Alignment explanation
Indices: 24050664--24050991 Score: 500
Period size: 176 Copynumber: 1.9 Consensus size: 176
24050654 TAGTGAGAGA
24050664 AGCCTTTTAACATTTAAAGTTTGTTACCTTTGGTTAAAGGAGCTTTTTGAATTTAAAGTTTGTTG
1 AGCCTTTTAACATTTAAAGTTTGTTACCTTTGGTTAAAGGAGCTTTTTGAATTTAAAGTTTGTTG
* * * * * *
24050729 CCTCTGGTGAGAGGAGCCTTTGAAATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTATCAT
66 CCTCTGATGAGAGCAGCCTTTAAAATTTAAAGTTTGTTGCCTCTGGTTAAAAGAACTTTTATCAT
*
24050794 TTAAAGTTTATTACCTTTGGTAAGAAGAGCCTTTTAACATTTAAAG
131 TTAAAGTTTATTACATTTGGTAAGAAGAGCCTTTTAACATTTAAAG
* *
24050840 AGCCTTTTAACATTTAAAGTTTGTT-GCTTCTGGTTACAGGAGCTTTTTGAATTTAAAGTTTGTT
1 AGCCTTTTAACATTTAAAGTTTGTTACCTT-TGGTTAAAGGAGCTTTTTGAATTTAAAGTTTGTT
24050904 GCCTCTGATGAGAGCAGCCTTTAAAATTTAAAGTTTGTTGCCTCTGG-TAAGAAGAACTTTTAAT
65 GCCTCTGATGAGAGCAGCCTTTAAAATTTAAAGTTTGTTGCCTCTGGTTAA-AAGAACTTTT-AT
* *
24050968 -ATTTTAAAGTTTGTTGCATTTGGT
128 CA-TTTAAAGTTTATTACATTTGGT
24050992 TAAAGAAGCT
Statistics
Matches: 137, Mismatches: 11, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
175 6 0.04
176 110 0.80
177 21 0.15
ACGTcount: A:0.27, C:0.12, G:0.20, T:0.42
Consensus pattern (176 bp):
AGCCTTTTAACATTTAAAGTTTGTTACCTTTGGTTAAAGGAGCTTTTTGAATTTAAAGTTTGTTG
CCTCTGATGAGAGCAGCCTTTAAAATTTAAAGTTTGTTGCCTCTGGTTAAAAGAACTTTTATCAT
TTAAAGTTTATTACATTTGGTAAGAAGAGCCTTTTAACATTTAAAG
Found at i:24051082 original size:118 final size:117
Alignment explanation
Indices: 24050843--24051069 Score: 303
Period size: 118 Copynumber: 1.9 Consensus size: 117
24050833 TTTAAAGAGC
* * * *
24050843 CTTTTAACATTTAAAGTTTGTTGCTTCTGGTTACAGGAGCTTTTTGAATTTAAAGTTTGTTGCCT
1 CTTTTAACATTTAAAGTTTGTTGCTTCTGGTTAAAGAAGCTTTTTGAATTTAAACTTTGTTACCT
*
24050908 CTGATGAGAGCAGCCTTTAAAATTTAAAGTTTGTTGCCTCTGGTAAGAAGAA
66 CTGATGAGAGCAGCCTTTAAAATTTAAAATTTGTTGCCTCTGGTAAGAAGAA
* *
24050960 CTTTTAATATTTTAAAGTTTGTTGCATT-TGGTTAAAGAAGCTTTTTGAATTTAAACTTTTTTAC
1 CTTTTAACA-TTTAAAGTTTGTTGC-TTCTGGTTAAAGAAGCTTTTTGAATTTAAACTTTGTTAC
* * * * ***
24051024 CTTTGGTGAGAGGAGCTTTTTTTATTTAAAATTTGTTGCCTCTGGT
64 CTCTGATGAGAGCAGCCTTTAAAATTTAAAATTTGTTGCCTCTGGT
24051070 GGGAGGAGCT
Statistics
Matches: 94, Mismatches: 14, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
117 8 0.09
118 84 0.89
119 2 0.02
ACGTcount: A:0.25, C:0.11, G:0.19, T:0.45
Consensus pattern (117 bp):
CTTTTAACATTTAAAGTTTGTTGCTTCTGGTTAAAGAAGCTTTTTGAATTTAAACTTTGTTACCT
CTGATGAGAGCAGCCTTTAAAATTTAAAATTTGTTGCCTCTGGTAAGAAGAA
Found at i:24052347 original size:16 final size:14
Alignment explanation
Indices: 24052287--24052372 Score: 55
Period size: 16 Copynumber: 5.6 Consensus size: 14
24052277 GGTAATAATT
*
24052287 TAAAAAAAAAAAAA
1 TAAAAATAAAAAAA
* *
24052301 TAAATAGAATAAAAA
1 TAAAAATAA-AAAAA
* *
24052316 TGAAACTGAAATAAAA
1 TAAAAAT-AAA-AAAA
24052332 TAAAGACATAAAAAAA
1 TAAA-A-ATAAAAAAA
*
24052348 TACAAATAAAAAAA
1 TAAAAATAAAAAAA
24052362 TTTAAAAATAA
1 --TAAAAATAA
24052373 TAGTTGTTTA
Statistics
Matches: 55, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
14 16 0.29
15 10 0.18
16 24 0.44
17 4 0.07
18 1 0.02
ACGTcount: A:0.74, C:0.03, G:0.05, T:0.17
Consensus pattern (14 bp):
TAAAAATAAAAAAA
Found at i:24052485 original size:17 final size:17
Alignment explanation
Indices: 24052465--24052509 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
24052455 TAATTTTTGT
*
24052465 TAAAAAATAAAAAATTA
1 TAAAAAATAAAAAATAA
24052482 TAAAAAATAAAAAATAA
1 TAAAAAATAAAAAATAA
*
24052499 AAAAAAATAAA
1 TAAAAAATAAA
24052510 TTGTTTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (17 bp):
TAAAAAATAAAAAATAA
Found at i:24052710 original size:10 final size:10
Alignment explanation
Indices: 24052666--24052696 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
24052656 TTTATAGATG
24052666 TAAAACAATAA
1 TAAAA-AATAA
24052677 TAAAAAATAA
1 TAAAAAATAA
24052687 TAAAAAATAA
1 TAAAAAATAA
24052697 AATTAATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 15 0.75
11 5 0.25
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.19
Consensus pattern (10 bp):
TAAAAAATAA
Found at i:24056693 original size:27 final size:27
Alignment explanation
Indices: 24056634--24056686 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
24056624 CCTTACCCTT
24056634 GGGCTTGGAAGACTCGAACTTGTTCAA
1 GGGCTTGGAAGACTCGAACTTGTTCAA
24056661 GGGCTTGGAAGACTCGAACTTGTTCA
1 GGGCTTGGAAGACTCGAACTTGTTCA
24056687 GAGGCTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (27 bp):
GGGCTTGGAAGACTCGAACTTGTTCAA
Found at i:24061299 original size:51 final size:51
Alignment explanation
Indices: 24061212--24061320 Score: 159
Period size: 51 Copynumber: 2.1 Consensus size: 51
24061202 TTACATCATA
* *
24061212 CATTTGAGCTACTCCTAGTAATATTCTCAACGACAACATTATCTACACTTT
1 CATTTGAGCTACTCCTAGTAATATTCTCAACAACAACATTATCTACACCTT
*
24061263 CATTTGAGCTACT-CTCAGTAATATTGTCAGA-AACAACATTATCTACACCTT
1 CATTTGAGCTACTCCT-AGTAATATTCTCA-ACAACAACATTATCTACACCTT
24061314 CATTTGA
1 CATTTGA
24061321 AGCCTTTGAG
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
50 2 0.04
51 50 0.94
52 1 0.02
ACGTcount: A:0.32, C:0.24, G:0.09, T:0.35
Consensus pattern (51 bp):
CATTTGAGCTACTCCTAGTAATATTCTCAACAACAACATTATCTACACCTT
Found at i:24066583 original size:31 final size:31
Alignment explanation
Indices: 24066534--24066600 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 31
24066524 TATTTGAGAT
*
24066534 AATCCTAACAAATCATTACTTGTAAGACTTA
1 AATCTTAACAAATCATTACTTGTAAGACTTA
*
24066565 AATCTTAACAAA-CGATTACTTGTAAGATTTA
1 AATCTTAACAAATC-ATTACTTGTAAGACTTA
24066596 AATCT
1 AATCT
24066601 AAAACTTCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
30 1 0.03
31 32 0.97
ACGTcount: A:0.42, C:0.16, G:0.07, T:0.34
Consensus pattern (31 bp):
AATCTTAACAAATCATTACTTGTAAGACTTA
Found at i:24068229 original size:16 final size:16
Alignment explanation
Indices: 24068203--24068240 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
24068193 TGAGATCCCA
24068203 TTTTA-TTATTACA-CT
1 TTTTATTTATTA-ATCT
24068218 TTTTATTTATTAATCT
1 TTTTATTTATTAATCT
24068234 TTTTATT
1 TTTTATT
24068241 AATGCGAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTTATTTATTAATCT
Found at i:24068513 original size:14 final size:15
Alignment explanation
Indices: 24068496--24068524 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
24068486 AAGATTTTAG
24068496 GGTTT-GGGTTTTGA
1 GGTTTGGGGTTTTGA
24068510 GGTTTGGGGTTTTGA
1 GGTTTGGGGTTTTGA
24068525 TTTAAGGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.07, C:0.00, G:0.45, T:0.48
Consensus pattern (15 bp):
GGTTTGGGGTTTTGA
Found at i:24068551 original size:29 final size:30
Alignment explanation
Indices: 24068519--24068582 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 30
24068509 AGGTTTGGGG
*
24068519 TTTTG-ATTTAAGGGTTTAGATTTTAGAGA
1 TTTTGAATTTAAGGGTTTAGATTTAAGAGA
** *
24068548 TTTTGAATTTTGGGGTTTGGATTTAAGAGA
1 TTTTGAATTTAAGGGTTTAGATTTAAGAGA
24068578 TTTTG
1 TTTTG
24068583 GTTTTTAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 5 0.17
30 25 0.83
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (30 bp):
TTTTGAATTTAAGGGTTTAGATTTAAGAGA
Found at i:24068559 original size:51 final size:50
Alignment explanation
Indices: 24068458--24068567 Score: 123
Period size: 51 Copynumber: 2.2 Consensus size: 50
24068448 AGGATATGGA
* * **
24068458 AGGTTTAGGGTTTTGATTTTAGAGTTTGAAGATTTTAGGGTTTGGGTTTTG
1 AGGTTTGGGGTTTTGATTTAAGAGTTT-AAGATTTTAGGGTTTGAATTTTG
* *
24068509 AGGTTTGGGGTTTTGATTTAAGGGTTT-AGATTTTAGAGATTTTGAATTTTG
1 AGGTTTGGGGTTTTGATTTAAGAGTTTAAGATTTTAG-G-GTTTGAATTTTG
*
24068560 GGGTTTGG
1 AGGTTTGG
24068568 ATTTAAGAGA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
49 9 0.18
50 1 0.02
51 40 0.80
ACGTcount: A:0.18, C:0.00, G:0.34, T:0.48
Consensus pattern (50 bp):
AGGTTTGGGGTTTTGATTTAAGAGTTTAAGATTTTAGGGTTTGAATTTTG
Found at i:24070604 original size:131 final size:134
Alignment explanation
Indices: 24070417--24070699 Score: 394
Period size: 131 Copynumber: 2.1 Consensus size: 134
24070407 ATCAAGATTG
* *
24070417 AACTTAGATTGAATCACAAGTCAAAATATAAAGAGACTGAAATTAAACCATGAGTCAGAAAAA-A
1 AACTTGGATTGAATCACAAGTCAAAATATAAAGAGACCGAAATTAAACCATGAGTCAGAAAAATA
* * * *
24070481 ATAACAATCGAGATTAAATTATGATTTTGG-AAA-AAATTGAGATTAAACCACGAGTCAGAATAA
66 ACAACAATCGAGATTAAACTACGATTTTGGTAAAGAAATCGAGATTAAACCACGAGTCAGAATAA
24070544 CATC
131 CATC
**
24070548 AACTTGGATTGAATCACAAGTCAGAAA-ATAAAGAGACCGGGATTAAACCATGAGTCAGAAAAAT
1 AACTTGGATTGAATCACAAGTCA-AAATATAAAGAGACCGAAATTAAACCATGAGTCAGAAAAAT
* * *
24070612 AACAACAATCGAGATTAAACTACGATTTTGGATTAAAGAAATCGAGATTGAACCGCGAGTTAGAA
65 AACAACAATCGAGATTAAACTACGATTTTGG--TAAAGAAATCGAGATTAAACCACGAGTCAGAA
24070677 TAACATC
128 TAACATC
* *
24070684 AATTTGAATTGAATCA
1 AACTTGGATTGAATCA
24070700 TAATAAAGAG
Statistics
Matches: 133, Mismatches: 13, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
131 55 0.41
132 31 0.23
135 3 0.02
136 44 0.33
ACGTcount: A:0.47, C:0.13, G:0.17, T:0.23
Consensus pattern (134 bp):
AACTTGGATTGAATCACAAGTCAAAATATAAAGAGACCGAAATTAAACCATGAGTCAGAAAAATA
ACAACAATCGAGATTAAACTACGATTTTGGTAAAGAAATCGAGATTAAACCACGAGTCAGAATAA
CATC
Found at i:24070767 original size:43 final size:47
Alignment explanation
Indices: 24070714--24070801 Score: 112
Period size: 48 Copynumber: 1.9 Consensus size: 47
24070704 AAAGAGATCA
* *
24070714 GGATTGAACCACAAG-T-AAAA-AAA-ACAACAATCGAGATTAATCG
1 GGATTAAACCACAAGTTAAAAATAAAGACAACAATCAAGATTAATCG
*
24070757 GGATTAAACCACGAGTTAGAAAATAAAGACAACAATCAAGATTAA
1 GGATTAAACCACAAGTTA-AAAATAAAGACAACAATCAAGATTAA
24070802 ACTATGATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
43 13 0.35
44 1 0.03
46 4 0.11
47 3 0.08
48 16 0.43
ACGTcount: A:0.52, C:0.15, G:0.16, T:0.17
Consensus pattern (47 bp):
GGATTAAACCACAAGTTAAAAATAAAGACAACAATCAAGATTAATCG
Found at i:24070977 original size:173 final size:171
Alignment explanation
Indices: 24070583--24071196 Score: 798
Period size: 173 Copynumber: 3.6 Consensus size: 171
24070573 AAATAAAGAG
* * * *
24070583 ACCGGGATTAAACCATGAGTCAGAAAA-ATA-ACAACAATCGAGATTAAACTACGATTTTGGATT
1 ACCGGGATTAAACCACGAGTAAGAAAATAAAGACAACAATCAAGATTAAACTACGATTTTGGATT
* * * *
24070646 AAAGAAATCGAGATTGAACCGCGAGTTAGAATAACATCAATTTGAATTGAAT--CA-T----AAT
66 AAAGAAATCGAGATTAAACCGCGAGTCAGAATAACATCAACTTGGATTGAATCACAGTCAAAAAT
* * *
24070704 AAAGAGATCAGGATTGAACCACAAGTAAAAAAAACAACAATCGAGATTA
131 AAAGAGACCGGGATTGAACCACGAGT--------CAACAATCGAGATTA
* * *
24070753 ATCGGGATTAAACCACGAGTTAGAAAATAAAGACAACAATCAAGATTAAACTATGATTTTGGATT
1 ACCGGGATTAAACCACGAGTAAGAAAATAAAGACAACAATCAAGATTAAACTACGATTTTGGATT
*
24070818 AAAGAAATCGAGATTAAACCGTGAGTCAGAATAACATCAACTTGGATTGAATCACAAGTCAAAAA
66 AAAGAAATCGAGATTAAACCGCGAGTCAGAATAACATCAACTTGGATTGAATCAC-AGTC-AAAA
24070883 ATAAAGAGACCGGGATTGAACCACGAGTCAACAATCGAGATTA
129 ATAAAGAGACCGGGATTGAACCACGAGTCAACAATCGAGATTA
* * *
24070926 ACCGGGATTAAACTACGAGTAAGAAAATAAAGACAACAATCGAGATTAAACTATGATTTTGGATT
1 ACCGGGATTAAACCACGAGTAAGAAAATAAAGACAACAATCAAGATTAAACTACGATTTTGGATT
* *
24070991 AAAGAAATCAAGATTAAACCGTGAGTCAGAATAACATCAACTTGGATTGAATCACCAGTCAGAAA
66 AAAGAAATCGAGATTAAACCGCGAGTCAGAATAACATCAACTTGGATTGAATCA-CAGTCA-AAA
*
24071056 ATAAAGAGACCGGGATTGAATCACGAGTCAACAATCGAGATTA
129 ATAAAGAGACCGGGATTGAACCACGAGTCAACAATCGAGATTA
* * *
24071099 ATCGGGATTAAACTACGAGTAAGAAAATAAAGACAACAATCAAGATTAAACTACGATTTTAGATT
1 ACCGGGATTAAACCACGAGTAAGAAAATAAAGACAACAATCAAGATTAAACTACGATTTTGGATT
* * *
24071164 AAAAAAATC-AGGATTGAACCACGAGTCAGAATA
66 AAAGAAATCGA-GATTAAACCGCGAGTCAGAATA
24071197 TAAAGATTGG
Statistics
Matches: 402, Mismatches: 28, Indels: 25
0.88 0.06 0.05
Matches are distributed among these distances:
170 24 0.06
171 2 0.00
172 80 0.20
173 266 0.66
174 2 0.00
175 1 0.00
176 1 0.00
181 26 0.06
ACGTcount: A:0.46, C:0.14, G:0.18, T:0.21
Consensus pattern (171 bp):
ACCGGGATTAAACCACGAGTAAGAAAATAAAGACAACAATCAAGATTAAACTACGATTTTGGATT
AAAGAAATCGAGATTAAACCGCGAGTCAGAATAACATCAACTTGGATTGAATCACAGTCAAAAAT
AAAGAGACCGGGATTGAACCACGAGTCAACAATCGAGATTA
Found at i:24071300 original size:19 final size:16
Alignment explanation
Indices: 24071265--24071303 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 16
24071255 TCAAAAACTA
24071265 TAAAAATGATCAAGAT
1 TAAAAATGATCAAGAT
24071281 TAAAACATGAGTCAAAGAT
1 TAAAA-ATGA-TC-AAGAT
24071300 TAAA
1 TAAA
24071304 GATAACTGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 5 0.25
17 4 0.20
18 2 0.10
19 9 0.45
ACGTcount: A:0.56, C:0.08, G:0.13, T:0.23
Consensus pattern (16 bp):
TAAAAATGATCAAGAT
Found at i:24071390 original size:109 final size:109
Alignment explanation
Indices: 24071240--24071624 Score: 454
Period size: 109 Copynumber: 3.5 Consensus size: 109
24071230 AAGGAGATTG
* * * * * * *
24071240 GGATTAAATCGTAATTCAA-AAACTATAAAAATGATCAAGATTAAAACATGAGTCAAAGATTAAA
1 GGATTAAACCGTAAGTCAAGAAGCTATAAGAATGATCGAGATTAAACCACGAGTCAAAGATTAAA
*
24071304 GATAACTGAGATTGAATCGCAAGTCAAAGAAATAAAAATGACTA
66 GATAACTGAGACTGAATCGCAAGTCAAAGAAATAAAAATGACTA
*
24071348 GGATTAAACCGTAAGTCAAGAAGCTATAAGAATGATTGAGATTAAACCACGAGTCAAAGATTAAT
1 GGATTAAACCGTAAGTCAAGAAGCTATAAGAATGATCGAGATTAAACCACGAGTCAAAGATTAA-
** * * * *
24071413 A-ACGACCGGGACTGAACCACAAGTCAAAGAAAT-AAAATCGACTA
65 AGATAACTGAGACTGAATCGCAAGTCAAAGAAATAAAAAT-GACTA
* * * * *
24071457 GGATTAAACTGTAAATCTAGAAGCTATAAGAATGATCGGGATTAAACCACGCGTCAAAGATTAAA
1 GGATTAAACCGTAAGTCAAGAAGCTATAAGAATGATCGAGATTAAACCACGAGTCAAAGATTAAA
* * *
24071522 GATAACT-AGGACTGAATTGTAAGTCAAAGAAATAAAAATGATTA
66 GATAACTGA-GACTGAATCGCAAGTCAAAGAAATAAAAATGACTA
* * * * * *
24071566 AGATTAAATCGTAAGTCGAGAAGCTATAAGAATGATTGAAATTAAACCATGAGTCAAAG
1 GGATTAAACCGTAAGTCAAGAAGCTATAAGAATGATCGAGATTAAACCACGAGTCAAAG
24071625 CTATAAGAAT
Statistics
Matches: 231, Mismatches: 40, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
108 23 0.10
109 202 0.87
110 6 0.03
ACGTcount: A:0.48, C:0.12, G:0.18, T:0.22
Consensus pattern (109 bp):
GGATTAAACCGTAAGTCAAGAAGCTATAAGAATGATCGAGATTAAACCACGAGTCAAAGATTAAA
GATAACTGAGACTGAATCGCAAGTCAAAGAAATAAAAATGACTA
Found at i:24071602 original size:38 final size:36
Alignment explanation
Indices: 24071541--24071660 Score: 107
Period size: 36 Copynumber: 3.2 Consensus size: 36
24071531 GACTGAATTG
** * * *
24071541 TAAGTCAAAGAAATAAAAATGATT-AAGATTAAATCG
1 TAAGTCAAAGCTATAAGAATGATTGAA-ATTAAACCA
24071577 TAAGTCGAGAAGCTATAAGAATGATTGAAATTAAACCA
1 TAAGTC-A-AAGCTATAAGAATGATTGAAATTAAACCA
* * **
24071615 TGAGTCAAAGCTATAAGAATGATCGGGATTAAAACCA
1 TAAGTCAAAGCTATAAGAATGATTGAAATT-AAACCA
*
24071652 TGAGTCAAA
1 TAAGTCAAA
24071661 AATTAAAGAT
Statistics
Matches: 71, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
36 26 0.37
37 17 0.24
38 26 0.37
39 2 0.03
ACGTcount: A:0.48, C:0.10, G:0.18, T:0.23
Consensus pattern (36 bp):
TAAGTCAAAGCTATAAGAATGATTGAAATTAAACCA
Found at i:24071633 original size:36 final size:37
Alignment explanation
Indices: 24071586--24071660 Score: 116
Period size: 36 Copynumber: 2.1 Consensus size: 37
24071576 GTAAGTCGAG
*
24071586 AAGCTATAAGAATGATTGAAATT-AAACCATGAGTCA
1 AAGCTATAAGAATGATCGAAATTAAAACCATGAGTCA
**
24071622 AAGCTATAAGAATGATCGGGATTAAAACCATGAGTCA
1 AAGCTATAAGAATGATCGAAATTAAAACCATGAGTCA
24071659 AA
1 AA
24071661 AATTAAAGAT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
36 20 0.57
37 15 0.43
ACGTcount: A:0.47, C:0.12, G:0.19, T:0.23
Consensus pattern (37 bp):
AAGCTATAAGAATGATCGAAATTAAAACCATGAGTCA
Found at i:24071696 original size:146 final size:145
Alignment explanation
Indices: 24071477--24071769 Score: 428
Period size: 146 Copynumber: 2.0 Consensus size: 145
24071467 GTAAATCTAG
* * * *
24071477 AAGCTATAAGAATGATCGGGATTAAACCACGCGTCAAAGATTAAAGATAACTAGGACTGAATTGT
1 AAGCTATAAGAATGATCGGGATTAAACCACGAGTCAAAAATTAAAGATAACTAGGACTGAATCGC
* * ** *
24071542 AAGTCAAAGAAATAAAAATGATTAAGATTAAATCGTAAGTCGAGAAGCTATAAGAATGAT-TGAA
66 AAGTCAAAGAAATAAAAATGACTAAGATTAAACCAAAAGTCGAGAAGCTATAAGAATGATCAG-A
*
24071606 ATTAAACCATGAGTCA
130 ATTAAACCACGAGTCA
*
24071622 AAGCTATAAGAATGATCGGGATTAAAACCATGAGTCAAAAATTAAAGATAACT-GAGACTGAATC
1 AAGCTATAAGAATGATCGGGATT-AAACCACGAGTCAAAAATTAAAGATAACTAG-GACTGAATC
*
24071686 GCAAGTCAAAGAAATAAAAATGACTAGGATTAAACCAAAAGTCGAGAAGCTATAAGAATGATCAG
64 GCAAGTCAAAGAAATAAAAATGACTAAGATTAAACCAAAAGTCGAGAAGCTATAAGAATGATCAG
*
24071751 GATTAAACCACGAGTCA
129 AATTAAACCACGAGTCA
24071768 AA
1 AA
24071770 TATTAAAGAT
Statistics
Matches: 132, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
145 24 0.18
146 107 0.81
147 1 0.01
ACGTcount: A:0.47, C:0.12, G:0.19, T:0.21
Consensus pattern (145 bp):
AAGCTATAAGAATGATCGGGATTAAACCACGAGTCAAAAATTAAAGATAACTAGGACTGAATCGC
AAGTCAAAGAAATAAAAATGACTAAGATTAAACCAAAAGTCGAGAAGCTATAAGAATGATCAGAA
TTAAACCACGAGTCA
Found at i:24071701 original size:255 final size:256
Alignment explanation
Indices: 24071350--24071856 Score: 709
Period size: 255 Copynumber: 2.0 Consensus size: 256
24071340 AATGACTAGG
* * *
24071350 ATTAAACCGTAAGTCAAGAAGCTATAAGAATGATTGAGATTAAACCACGAGTCAAAGATTAATAA
1 ATTAAACCATAAGTCAAGAAGCTATAAGAATGATCGAGATTAAACCACGAGTCAAAAATTAATAA
* * ** *
24071415 CGACCGGGACTGAACCACAAGTCAAAGAAAT-AAAATCGACTAGGATTAAACTGTAAA-TCTAGA
66 CAACCGAGACTGAACCACAAGTCAAAGAAATAAAAAT-GACTAGGATTAAAC-CAAAAGTCGAGA
* * ***
24071478 AGCTATAAGAATGATCGGGATTAAACCACGCGTCAAAGATTAAAGATAACTAGGACTGAATTGTA
129 AGCTATAAGAATGATCAGGATTAAACCACGAGTCAAAGATTAAAGATAACTAGGACTGAACCATA
* *
24071543 AGTCAAAGAAATAAAAATGATTAAGATTAAATCGTAAGTCGAGAAGCTATAAGAATGATTGAA
194 AGTCAAAGAAATAAAAATGACTAAGATTAAACCGTAAGTCGAGAAGCTATAAGAATGATTGAA
* * *
24071606 ATTAAACCATGAGTC-A-AAGCTATAAGAATGATCGGGATTAAAACCATGAGTCAAAAATTAA-A
1 ATTAAACCATAAGTCAAGAAGCTATAAGAATGATCGAGATT-AAACCACGAGTCAAAAATTAATA
* * * *
24071668 GATAACTGAGACTGAATCGCAAGTCAAAGAAATAAAAATGACTAGGATTAAACCAAAAGTCGAGA
65 -ACAACCGAGACTGAACCACAAGTCAAAGAAATAAAAATGACTAGGATTAAACCAAAAGTCGAGA
* * *
24071733 AGCTATAAGAATGATCAGGATTAAACCACGAGTCAAATATTAAAGATAATTGGGACTGAACCATA
129 AGCTATAAGAATGATCAGGATTAAACCACGAGTCAAAGATTAAAGATAACTAGGACTGAACCATA
*
24071798 AGTCAAAGAAATAAAAATGACTAGGATTAAACCGTAAGTCGAGAAGCTATAAGAATGAT
194 AGTCAAAGAAATAAAAATGACTAAGATTAAACCGTAAGTCGAGAAGCTATAAGAATGAT
24071857 CAGGATAAAA
Statistics
Matches: 221, Mismatches: 26, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
254 25 0.11
255 178 0.81
256 18 0.08
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.21
Consensus pattern (256 bp):
ATTAAACCATAAGTCAAGAAGCTATAAGAATGATCGAGATTAAACCACGAGTCAAAAATTAATAA
CAACCGAGACTGAACCACAAGTCAAAGAAATAAAAATGACTAGGATTAAACCAAAAGTCGAGAAG
CTATAAGAATGATCAGGATTAAACCACGAGTCAAAGATTAAAGATAACTAGGACTGAACCATAAG
TCAAAGAAATAAAAATGACTAAGATTAAACCGTAAGTCGAGAAGCTATAAGAATGATTGAA
Found at i:24071746 original size:38 final size:35
Alignment explanation
Indices: 24071688--24071976 Score: 125
Period size: 38 Copynumber: 7.9 Consensus size: 35
24071678 ACTGAATCGC
** *
24071688 AAGTCAAAGAAATAAAAATGACTAGGATTAAACCAA
1 AAGTCAAAGCTATAAAAATGA-TAGGATTAAACCAT
* *
24071724 AAGTCGAGAAGCTATAAGAATGATCAGGATTAAACCAC
1 AAGTC-A-AAGCTATAAAAATGAT-AGGATTAAACCAT
* * * * * *
24071762 GAGTCAAA--TATTAAAGATAATTGGGACTGAACCAT
1 AAGTCAAAGCTA-TAAAAATGA-TAGGATTAAACCAT
** *
24071797 AAGTCAAAGAAATAAAAATGACTAGGATTAAACCGT
1 AAGTCAAAGCTATAAAAATGA-TAGGATTAAACCAT
* * *
24071833 AAGTCGAGAAGCTATAAGAATGATCAGGATAAAACCAC
1 AAGTC-A-AAGCTATAAAAATGAT-AGGATTAAACCAT
* * * * * * * **
24071871 GAGTCAAAGAT-TAAAGATAATTGGGACTGAACCGC
1 AAGTCAAAGCTATAAAAATGA-TAGGATTAAACCAT
*** * *
24071906 AAGTCAAAAAAATAAAAATGACTAGGATTAAATCGT
1 AAGTCAAAGCTATAAAAATGA-TAGGATTAAACCAT
* *
24071942 AAGTCGAAAAGCTATAAGAATGATCGGGATTAAAC
1 AAGTC--AAAGCTATAAAAATGAT-AGGATTAAAC
24071977 TACGAGTCAA
Statistics
Matches: 184, Mismatches: 54, Indels: 28
0.69 0.20 0.11
Matches are distributed among these distances:
34 2 0.01
35 44 0.24
36 56 0.30
37 8 0.04
38 74 0.40
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.20
Consensus pattern (35 bp):
AAGTCAAAGCTATAAAAATGATAGGATTAAACCAT
Found at i:24071801 original size:109 final size:109
Alignment explanation
Indices: 24071606--24072033 Score: 617
Period size: 109 Copynumber: 3.9 Consensus size: 109
24071596 AATGATTGAA
* * * *
24071606 ATTAAACCATGAGTC-A-AAGCTATAAGAATGATCGGGATTAAAACCATGAGTCAAAAATTAAAG
1 ATTAAACCATAAGTCGAGAAGCTATAAGAATGATCAGGATT-AAACCACGAGTCAAAGATTAAAG
* *
24071669 ATAACTGAGACTGAATCGCAAGTCAAAGAAATAAAAATGACTAGG
65 ATAACTGGGACTGAACCGCAAGTCAAAGAAATAAAAATGACTAGG
* *
24071714 ATTAAACCAAAAGTCGAGAAGCTATAAGAATGATCAGGATTAAACCACGAGTCAAATATTAAAGA
1 ATTAAACCATAAGTCGAGAAGCTATAAGAATGATCAGGATTAAACCACGAGTCAAAGATTAAAGA
* **
24071779 TAATTGGGACTGAACCATAAGTCAAAGAAATAAAAATGACTAGG
66 TAACTGGGACTGAACCGCAAGTCAAAGAAATAAAAATGACTAGG
* *
24071823 ATTAAACCGTAAGTCGAGAAGCTATAAGAATGATCAGGATAAAACCACGAGTCAAAGATTAAAGA
1 ATTAAACCATAAGTCGAGAAGCTATAAGAATGATCAGGATTAAACCACGAGTCAAAGATTAAAGA
* *
24071888 TAATTGGGACTGAACCGCAAGTCAAAAAAATAAAAATGACTAGG
66 TAACTGGGACTGAACCGCAAGTCAAAGAAATAAAAATGACTAGG
* * * * *
24071932 ATTAAATCGTAAGTCGAAAAGCTATAAGAATGATCGGGATTAAACTACGAGTCAAAGATTAAAGA
1 ATTAAACCATAAGTCGAGAAGCTATAAGAATGATCAGGATTAAACCACGAGTCAAAGATTAAAGA
* * **
24071997 TAACTAGGACTGAACTGCAAGTCAGGGAAATAAAAAT
66 TAACTGGGACTGAACCGCAAGTCAAAGAAATAAAAAT
24072034 AACCATAACT
Statistics
Matches: 290, Mismatches: 28, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
108 13 0.04
109 255 0.88
110 22 0.08
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (109 bp):
ATTAAACCATAAGTCGAGAAGCTATAAGAATGATCAGGATTAAACCACGAGTCAAAGATTAAAGA
TAACTGGGACTGAACCGCAAGTCAAAGAAATAAAAATGACTAGG
Found at i:24071956 original size:364 final size:363
Alignment explanation
Indices: 24071262--24071988 Score: 1082
Period size: 364 Copynumber: 2.0 Consensus size: 363
24071252 AATTCAAAAA
* *
24071262 CTATAAAAATGATCAAGATTAAAACATGAGTCAAAGATTAAAGATAACTGAGATTGAATCGCAAG
1 CTATAAAAATGATCAAGATTAAAACATGAGTCAAAAATTAAAGATAACTGAGACTGAATCGCAAG
** *
24071327 TCAAAGAAATAAAAATGACTAGGATTAAACCGTAAGTCAAGAAGCTATAAGAATGATTGAGATTA
66 TCAAAGAAATAAAAATGACTAGGATTAAACCAAAAGTCAAGAAGCTATAAGAATGATAGAGATTA
*
24071392 AACCACGAGTCAAAGATTAATAACGACCGGGACTGAACCACAAGTCAAAGAAATAAAATCGACTA
131 AACCACGAGTCAAAGATTAATAACAACCGGGACTGAACCACAAGTCAAAGAAATAAAATCGACTA
* * * * *
24071457 GGATTAAACTGTAAATCTAGAAGCTATAAGAATGATCGGGATTAAACCACGCGTCAAAGATTAAA
196 GGATTAAACCGTAAATCGAGAAGCTATAAGAATGATCAGGATAAAACCACGAGTCAAAGATTAAA
** * * * *
24071522 GATAACTAGGACTGAATTGTAAGTCAAAGAAATAAAAATGATTAAGATTAAATCGTAAGTCGAGA
261 GATAACTAGGACTGAACCGCAAGTCAAAAAAATAAAAATGACTAAGATTAAATCGTAAGTCGAAA
* *
24071587 AGCTATAAGAATGATTGAAATTAAACCATGAGTCAAAG
326 AGCTATAAGAATGATCGAAATTAAACCACGAGTCAAAG
* **
24071625 CTATAAGAATGATCGGGATTAAAACCATGAGTCAAAAATTAAAGATAACTGAGACTGAATCGCAA
1 CTATAAAAATGATCAAGATTAAAA-CATGAGTCAAAAATTAAAGATAACTGAGACTGAATCGCAA
*
24071690 GTCAAAGAAATAAAAATGACTAGGATTAAACCAAAAGTCGAGAAGCTATAAGAATGATCAG-GAT
65 GTCAAAGAAATAAAAATGACTAGGATTAAACCAAAAGTCAAGAAGCTATAAGAATGAT-AGAGAT
* * ** *
24071754 TAAACCACGAGTCAAATATTAA-AGATAATTGGGACTGAACCATAAGTCAAAGAAATAAAAAT-G
129 TAAACCACGAGTCAAAGATTAATA-ACAACCGGGACTGAACCACAAGTCAAAGAAAT-AAAATCG
*
24071817 ACTAGGATTAAACCGTAAGTCGAGAAGCTATAAGAATGATCAGGATAAAACCACGAGTCAAAGAT
192 ACTAGGATTAAACCGTAAATCGAGAAGCTATAAGAATGATCAGGATAAAACCACGAGTCAAAGAT
* * *
24071882 TAAAGATAATTGGGACTGAACCGCAAGTCAAAAAAATAAAAATGACTAGGATTAAATCGTAAGTC
257 TAAAGATAACTAGGACTGAACCGCAAGTCAAAAAAATAAAAATGACTAAGATTAAATCGTAAGTC
** *
24071947 GAAAAGCTATAAGAATGATCGGGATTAAACTACGAGTCAAAG
322 GAAAAGCTATAAGAATGATCGAAATTAAACCACGAGTCAAAG
24071989 ATTAAAGATA
Statistics
Matches: 325, Mismatches: 35, Indels: 7
0.89 0.10 0.02
Matches are distributed among these distances:
363 22 0.07
364 297 0.91
365 6 0.02
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.21
Consensus pattern (363 bp):
CTATAAAAATGATCAAGATTAAAACATGAGTCAAAAATTAAAGATAACTGAGACTGAATCGCAAG
TCAAAGAAATAAAAATGACTAGGATTAAACCAAAAGTCAAGAAGCTATAAGAATGATAGAGATTA
AACCACGAGTCAAAGATTAATAACAACCGGGACTGAACCACAAGTCAAAGAAATAAAATCGACTA
GGATTAAACCGTAAATCGAGAAGCTATAAGAATGATCAGGATAAAACCACGAGTCAAAGATTAAA
GATAACTAGGACTGAACCGCAAGTCAAAAAAATAAAAATGACTAAGATTAAATCGTAAGTCGAAA
AGCTATAAGAATGATCGAAATTAAACCACGAGTCAAAG
Found at i:24076525 original size:20 final size:20
Alignment explanation
Indices: 24076488--24076526 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
24076478 TTCCGACGAA
*
24076488 AAAACCCAGATTTCGGTGAC
1 AAAACCCAGATCTCGGTGAC
24076508 AAAACCCAGAATCT-GGTGA
1 AAAACCCAG-ATCTCGGTGA
24076527 ATCTTCAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.18
Consensus pattern (20 bp):
AAAACCCAGATCTCGGTGAC
Found at i:24076907 original size:11 final size:11
Alignment explanation
Indices: 24076857--24077010 Score: 60
Period size: 11 Copynumber: 14.2 Consensus size: 11
24076847 TTTTTTTAAA
24076857 TTTT-TTTA-T
1 TTTTATTTATT
*
24076866 TTTCATTTATT
1 TTTTATTTATT
24076877 TGTTTATTTA--
1 T-TTTATTTATT
24076887 TTTT-TTTATT
1 TTTTATTTATT
24076897 TTTTATTTATT
1 TTTTATTTATT
**
24076908 AGATTAGGTTTATT
1 -TTTTA--TTTATT
**
24076922 TAATATTCT-TT
1 TTTTATT-TATT
* *
24076933 TTATCTTTATT
1 TTTTATTTATT
24076944 TTATT-TTTATT
1 TT-TTATTTATT
*
24076955 TTTGT-TTTA-C
1 TTT-TATTTATT
*
24076965 TTTTCTTTATT
1 TTTTATTTATT
24076976 TTTTATTT-TT
1 TTTTATTTATT
*
24076986 ATTTATTT-TT
1 TTTTATTTATT
24076996 TTATTATTCTATT
1 TT-TTATT-TATT
24077009 TT
1 TT
24077011 CTTTAAATAA
Statistics
Matches: 113, Mismatches: 14, Indels: 32
0.71 0.09 0.20
Matches are distributed among these distances:
8 4 0.04
9 7 0.06
10 30 0.27
11 46 0.41
12 13 0.12
13 7 0.06
14 6 0.05
ACGTcount: A:0.18, C:0.04, G:0.03, T:0.75
Consensus pattern (11 bp):
TTTTATTTATT
Found at i:24076923 original size:4 final size:4
Alignment explanation
Indices: 24076856--24076907 Score: 52
Period size: 4 Copynumber: 12.8 Consensus size: 4
24076846 TTTTTTTTAA
* * *
24076856 ATTT TTTT ATTTT CATTT ATTT GTTT ATTT ATTT TTTT ATTT -TTT ATTT
1 ATTT ATTT A-TTT -ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
24076905 ATT
1 ATT
24076908 AGATTAGGTT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
3 3 0.08
4 29 0.74
5 6 0.15
6 1 0.03
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (4 bp):
ATTT
Found at i:24076952 original size:17 final size:17
Alignment explanation
Indices: 24076930--24076987 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
24076920 TTTAATATTC
24076930 TTTTTATCTTTATTTTA
1 TTTTTATCTTTATTTTA
* *
24076947 TTTTTATTTTTGTTTTA
1 TTTTTATCTTTATTTTA
*
24076964 -CTTT-TCTTTATTTTTTA
1 TTTTTATCTTTA--TTTTA
24076981 TTTTTAT
1 TTTTTAT
24076988 TTATTTTTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
15 4 0.13
16 3 0.10
17 20 0.65
18 3 0.10
19 1 0.03
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTTTATCTTTATTTTA
Found at i:24076978 original size:28 final size:25
Alignment explanation
Indices: 24076942--24077010 Score: 52
Period size: 26 Copynumber: 2.6 Consensus size: 25
24076932 TTTATCTTTA
*
24076942 TTTTA-TTTTTATTTTTGTTTTACTTT
1 TTTTATTTTTTATTTTT-ATTTA-TTT
*
24076968 TCTT-TATTTTTTATTTTTATTTATTT
1 TTTTAT-TTT-TTATTTTTATTTATTT
*
24076994 TTTTATTATTCTATTTT
1 TTTTATT-TTTTATTTT
24077011 CTTTAAATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
26 16 0.47
27 10 0.29
28 8 0.24
ACGTcount: A:0.14, C:0.04, G:0.01, T:0.80
Consensus pattern (25 bp):
TTTTATTTTTTATTTTTATTTATTT
Found at i:24076998 original size:12 final size:12
Alignment explanation
Indices: 24076865--24077000 Score: 71
Period size: 12 Copynumber: 10.7 Consensus size: 12
24076855 AATTTTTTTA
*
24076865 TTTTCATTTATT
1 TTTTTATTTATT
*
24076877 TGTTTATTTATT
1 TTTTTATTTATT
*
24076889 TTTTTATTTTTT
1 TTTTTATTTATT
*
24076901 ATTTATTAGATTAGGTT
1 -TTT-TTA-TTTA--TT
* *
24076918 TATTTA-ATATT
1 TTTTTATTTATT
24076929 CTTTTTATCTTTATT
1 -TTTTTA--TTTATT
*
24076944 TTATT-TTTATT
1 TTTTTATTTATT
*
24076955 TTTGT-TTTACTT
1 TTTTTATTTA-TT
*
24076967 TTCTTTATTTTTT
1 TT-TTTATTTATT
24076980 ATTTTTATTTATT
1 -TTTTTATTTATT
24076993 TTTTTATT
1 TTTTTATT
24077001 ATTCTATTTT
Statistics
Matches: 95, Mismatches: 16, Indels: 26
0.69 0.12 0.19
Matches are distributed among these distances:
11 15 0.16
12 37 0.39
13 18 0.19
14 12 0.13
15 9 0.09
16 2 0.02
17 2 0.02
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.75
Consensus pattern (12 bp):
TTTTTATTTATT
Found at i:24077185 original size:59 final size:56
Alignment explanation
Indices: 24077037--24077365 Score: 412
Period size: 59 Copynumber: 5.7 Consensus size: 56
24077027 AAATTTCCAA
*
24077037 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTC
1 AAAAAATATTTTT-GAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
*** * *
24077093 AAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTTT
1 AAAAAATATTTTTGA-GAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT--AAATTTTC
*
24077152 AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTC
1 AAAAAATATTTTT-GAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* *
24077209 AAAAAA-AGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTC
1 AAAAAATA---TTTTTGA-GAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTC
* *
24077269 AAAAAAAATATTTTTCAGAAAAAGTTGAAAGTATCAA-TTTCCTTAAAAATAAATTTCC
1 --AAAAAATATTTTTGAG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
24077327 AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTT
1 AAAAAATATTTTT-GAGAAAAGTTGAAAGTATCAATTTT
24077366 TTCTACACAA
Statistics
Matches: 237, Mismatches: 20, Indels: 31
0.82 0.07 0.11
Matches are distributed among these distances:
55 1 0.00
56 74 0.31
57 18 0.08
58 11 0.05
59 93 0.39
60 33 0.14
62 6 0.03
63 1 0.00
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.35
Consensus pattern (56 bp):
AAAAAATATTTTTGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:24077253 original size:118 final size:119
Alignment explanation
Indices: 24077020--24077365 Score: 525
Period size: 118 Copynumber: 3.0 Consensus size: 119
24077010 TCTTTAAATA
24077020 AAAATCAAAATTTCCAAAAAAAATATTTTTAGG-GAAAAGTTGAAAGTATCAATTTTCCTTAAAA
1 AAAATCAAAATTT-CAAAAAAAATATTTTT-GGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
24077084 ATAAA-TTTC--AAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
64 ATAAATTTTCAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
** *
24077137 AAAATCAAAATTT-TTAAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT
1 AAAATCAAAATTTCAAAAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
24077201 AAATTTTCAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
66 AAATTTTCAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
*
24077255 AAAATCAAAATTTCAAAAAAAATATTTTT-CAGAAAAAGTTGAAAGTATCAA-TTTCCTTAAAAA
1 AAAATCAAAATTTCAAAAAAAATATTTTTGGAG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAA
*
24077318 TAAATTTCCAAAAAATA---TTTTTG-GAGAAAAGTTGAAAGTATCAATTTT
65 TAAATTTTCAAAAAA-AGGGTTTTTGAG-GAAAAGTTGAAAGTATCAATTTT
24077366 TTCTACACAA
Statistics
Matches: 213, Mismatches: 8, Indels: 17
0.89 0.03 0.07
Matches are distributed among these distances:
114 2 0.01
115 49 0.23
116 33 0.15
117 13 0.06
118 84 0.39
119 32 0.15
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.34
Consensus pattern (119 bp):
AAAATCAAAATTTCAAAAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
AAATTTTCAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
Found at i:24082458 original size:41 final size:41
Alignment explanation
Indices: 24082413--24082656 Score: 400
Period size: 41 Copynumber: 5.9 Consensus size: 41
24082403 CAAGGAGTAT
24082413 TTTACTTTTCCAAGTCGTGGTGCCTCTGTTTAGAGGAGCAA
1 TTTACTTTTCCAAGTCGTGGTGCCTCTGTTTAGAGGAGCAA
24082454 TTTACTTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAA
1 TTTACTTTTCC--AAGTCGTGGTGCCTCTGTTTAGAGGAGCAA
* *
24082497 TTTACTTTTTCAAGTCGTGGTGCCTCTGTTTAGAGGAGTAA
1 TTTACTTTTCCAAGTCGTGGTGCCTCTGTTTAGAGGAGCAA
24082538 TTTACTTTTCCAAGTCGTGGTGCCTCTGTTTAGAGGAGCAA
1 TTTACTTTTCCAAGTCGTGGTGCCTCTGTTTAGAGGAGCAA
*
24082579 TTTAC-TTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAA
1 TTTACTTTTC-CAAGTCGTGGTGCCTCTGTTTAGAGGAGCAA
* *
24082620 CTTATTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGG
1 TTTACTTTTCC-AAGTCGTGGTGCCTCTGTTTAGAGG
24082657 CCTCTGTTTA
Statistics
Matches: 190, Mismatches: 8, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
40 4 0.02
41 117 0.62
42 29 0.15
43 40 0.21
ACGTcount: A:0.20, C:0.18, G:0.24, T:0.37
Consensus pattern (41 bp):
TTTACTTTTCCAAGTCGTGGTGCCTCTGTTTAGAGGAGCAA
Found at i:24082661 original size:14 final size:14
Alignment explanation
Indices: 24082642--24082670 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
24082632 AAGTCGTGGT
24082642 GCCTCTGTTTAGAG
1 GCCTCTGTTTAGAG
24082656 GCCTCTGTTTAGAG
1 GCCTCTGTTTAGAG
24082670 G
1 G
24082671 AGCAATTTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.21, G:0.31, T:0.34
Consensus pattern (14 bp):
GCCTCTGTTTAGAG
Found at i:24082705 original size:55 final size:55
Alignment explanation
Indices: 24082600--24082711 Score: 190
Period size: 55 Copynumber: 2.0 Consensus size: 55
24082590 AAGTCGTGGT
24082600 GCCTCTGTTTAGAGGAGCAACTTATTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
1 GCCTCTGTTTAGAGGAGCAACTTATTTTT-CAAAGTCGTGGTGCCTCTGTTTAGAG
*
24082656 GCCTCTGTTTAGAGGAGCAATTTACTTTTT-AAAGTCGTGGTGCCTCTGTTTAGAG
1 GCCTCTGTTTAGAGGAGCAACTTA-TTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
24082711 G
1 G
24082712 AGCAATTTAT
Statistics
Matches: 54, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
55 26 0.48
56 23 0.43
57 5 0.09
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.37
Consensus pattern (55 bp):
GCCTCTGTTTAGAGGAGCAACTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
Found at i:24082730 original size:97 final size:97
Alignment explanation
Indices: 24082559--24082753 Score: 345
Period size: 97 Copynumber: 2.0 Consensus size: 97
24082549 AAGTCGTGGT
24082559 GCCTCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAACTTA
1 GCCTCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAACTTA
*
24082624 TTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
66 TTTTCCCAAAGTCGTGGTGCCTCTGTTTAGAG
** *
24082656 GCCTCTGTTTAGAGGAGCAATTTACTTTTTAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA
1 GCCTCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAACTTA
*
24082721 TTTTCCCAAAGTCTTGGTGCCTCTGTTTAGAG
66 TTTTCCCAAAGTCGTGGTGCCTCTGTTTAGAG
24082753 G
1 G
24082754 AGAATTTACT
Statistics
Matches: 93, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
97 93 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (97 bp):
GCCTCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAACTTA
TTTTCCCAAAGTCGTGGTGCCTCTGTTTAGAG
Found at i:24082777 original size:179 final size:165
Alignment explanation
Indices: 24082656--24082961 Score: 492
Period size: 165 Copynumber: 1.9 Consensus size: 165
24082646 CTGTTTAGAG
*
24082656 GCCTCTGTTTAGAGGAGCAATTTACTTTTTAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA
1 GCCTCTGTTTAGAGGAGCAATTTACTTTTTAAAGTCGTGGTGCCTCTGTTTAGAGGAGTAATTTA
*
24082721 TTTTCCCAAAGTCTTGGTGCCTCTGTTTAGAGGAG-AATTTACTTTCCAAAGTCGTGGTGCCTCT
66 TTTT-CCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCT
*
24082785 GTTTAGAGGAGCAATTTACTTTCTTAAAGTTGTGGT
130 GTTTAGAGGAGCAACTTACTTTCTTAAAGTTGTGGT
*
24082821 GCCTCTGTTTAGAGGAGCAATTTAC-TTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGTAATTTA
1 GCCTCTGTTTAGAGGAGCAATTTACTTTTTAAAGTCGTGGTGCCTCTGTTTAGAGGAGTAATTTA
* * * *
24082885 CTTT-CAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTATGTTTCTCAAAGTCGTTGAGCCTC
66 TTTTCCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTA-CTTTC-CAAAGTCGTGGTGCCTC
24082949 TGTTTAGAGGAGC
129 TGTTTAGAGGAGC
24082962 TTCGGTAAAA
Statistics
Matches: 131, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
162 28 0.21
163 6 0.05
164 44 0.34
165 53 0.40
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.37
Consensus pattern (165 bp):
GCCTCTGTTTAGAGGAGCAATTTACTTTTTAAAGTCGTGGTGCCTCTGTTTAGAGGAGTAATTTA
TTTTCCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTG
TTTAGAGGAGCAACTTACTTTCTTAAAGTTGTGGT
Found at i:24082779 original size:40 final size:41
Alignment explanation
Indices: 24082656--24082961 Score: 456
Period size: 40 Copynumber: 7.4 Consensus size: 41
24082646 CTGTTTAGAG
**
24082656 GCCTCTGTTTAGAGGAGCAATTTACTTTTTAAAGTCGTGGT
1 GCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGT
* *
24082697 GCCTCTGTTTAGAGGAGCAATTTATTTTCCCAAAGTCTTGGT
1 GCCTCTGTTTAGAGGAGCAATTTACTTT-CCAAAGTCGTGGT
24082739 GCCTCTGTTTAGAGGAG-AATTTACTTTCCAAAGTCGTGGT
1 GCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGT
* *
24082779 GCCTCTGTTTAGAGGAGCAATTTACTTTCTTAAAGTTGTGGT
1 GCCTCTGTTTAGAGGAGCAATTTACTTTC-CAAAGTCGTGGT
24082821 GCCTCTGTTTAGAGGAGCAATTTACTTT-CAAAGTCGTGGT
1 GCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGT
* *
24082861 GCCTCTGTTTAGAGGAGTAATTTACTTT-CAAAGTCATGGT
1 GCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGT
* * *
24082901 GCCTCTGTTTAGAGGAGCAATTTATGTTTCTCAAAGTCGTTGA
1 GCCTCTGTTTAGAGGAGCAATTTA-CTTTC-CAAAGTCGTGGT
24082944 GCCTCTGTTTAGAGGAGC
1 GCCTCTGTTTAGAGGAGC
24082962 TTCGGTAAAA
Statistics
Matches: 242, Mismatches: 17, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
40 100 0.41
41 50 0.21
42 65 0.27
43 27 0.11
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.37
Consensus pattern (41 bp):
GCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGT
Found at i:24082794 original size:82 final size:82
Alignment explanation
Indices: 24082656--24082961 Score: 458
Period size: 82 Copynumber: 3.7 Consensus size: 82
24082646 CTGTTTAGAG
**
24082656 GCCTCTGTTTAGAGGAGCAATTTACTTTTTAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA
1 GCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA
*
24082721 TTTTCCCAAAGTCTTGGT
66 CTTT-CCAAAGTCTTGGT
24082739 GCCTCTGTTTAGAGGAG-AATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA
1 GCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA
*
24082803 CTTTCTTAAAGT-TGTGGT
66 CTTTC-CAAAGTCT-TGGT
*
24082821 GCCTCTGTTTAGAGGAGCAATTTACTTT-CAAAGTCGTGGTGCCTCTGTTTAGAGGAGTAATTTA
1 GCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA
*
24082885 CTTT-CAAAGTCATGGT
66 CTTTCCAAAGTCTTGGT
* * *
24082901 GCCTCTGTTTAGAGGAGCAATTTATGTTTCTCAAAGTCGTTGAGCCTCTGTTTAGAGGAGC
1 GCCTCTGTTTAGAGGAGCAATTTA-CTTTC-CAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
24082962 TTCGGTAAAA
Statistics
Matches: 205, Mismatches: 11, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
80 33 0.16
81 5 0.02
82 113 0.55
83 54 0.26
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.37
Consensus pattern (82 bp):
GCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA
CTTTCCAAAGTCTTGGT
Found at i:24082974 original size:1 final size:1
Alignment explanation
Indices: 24082968--24083024 Score: 51
Period size: 1 Copynumber: 57.0 Consensus size: 1
24082958 GAGCTTCGGT
* * * * * **
24082968 AAAAAAAAAACAAAAAAATAAAAAAACAAAAAAAAACACAAAAAAGCAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
24083025 CAATAAATGA
Statistics
Matches: 43, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.88, C:0.09, G:0.02, T:0.02
Consensus pattern (1 bp):
A
Found at i:24082984 original size:8 final size:8
Alignment explanation
Indices: 24082971--24083021 Score: 57
Period size: 8 Copynumber: 5.9 Consensus size: 8
24082961 CTTCGGTAAA
24082971 AAAAAAAC
1 AAAAAAAC
*
24082979 AAAAAAAT
1 AAAAAAAC
24082987 AAAAAAAC
1 AAAAAAAC
24082995 AAAAAAAAAC
1 --AAAAAAAC
24083005 ACAAAAAAGC
1 A-AAAAAA-C
24083015 AAAAAAA
1 AAAAAAA
24083022 AAACAATAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
8 15 0.41
9 12 0.32
10 10 0.27
ACGTcount: A:0.86, C:0.10, G:0.02, T:0.02
Consensus pattern (8 bp):
AAAAAAAC
Found at i:24082991 original size:19 final size:19
Alignment explanation
Indices: 24082967--24083021 Score: 60
Period size: 18 Copynumber: 3.0 Consensus size: 19
24082957 GGAGCTTCGG
24082967 TAAAAAAAAAACAAAAAAA
1 TAAAAAAAAAACAAAAAAA
*
24082986 TAAAAAAACAA-AAAAAAA
1 TAAAAAAAAAACAAAAAAA
* * *
24083004 -CACAAAAAAGCAAAAAAA
1 TAAAAAAAAAACAAAAAAA
24083022 AAACAATAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
17 6 0.20
18 14 0.47
19 10 0.33
ACGTcount: A:0.85, C:0.09, G:0.02, T:0.04
Consensus pattern (19 bp):
TAAAAAAAAAACAAAAAAA
Found at i:24083008 original size:28 final size:27
Alignment explanation
Indices: 24082968--24083021 Score: 81
Period size: 28 Copynumber: 2.0 Consensus size: 27
24082958 GAGCTTCGGT
*
24082968 AAAAAAAAAACAAAAAAATAAAAAAAC
1 AAAAAAAAAACAAAAAAACAAAAAAAC
*
24082995 AAAAAAAAACACAAAAAAGCAAAAAAA
1 AAAAAAAAA-ACAAAAAAACAAAAAAA
24083022 AAACAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 9 0.38
28 15 0.62
ACGTcount: A:0.87, C:0.09, G:0.02, T:0.02
Consensus pattern (27 bp):
AAAAAAAAAACAAAAAAACAAAAAAAC
Found at i:24083027 original size:19 final size:19
Alignment explanation
Indices: 24082968--24083027 Score: 77
Period size: 20 Copynumber: 3.1 Consensus size: 19
24082958 GAGCTTCGGT
*
24082968 AAAAAAA-AAACAAAAAAAT
1 AAAAAAACAAA-AAAAAAAC
24082987 AAAAAAACAAAAAAAAACAC
1 AAAAAAACAAAAAAAAA-AC
*
24083007 AAAAAAGCAAAAAAAAAAC
1 AAAAAAACAAAAAAAAAAC
24083026 AA
1 AA
24083028 TAAATGACAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
19 17 0.46
20 20 0.54
ACGTcount: A:0.87, C:0.10, G:0.02, T:0.02
Consensus pattern (19 bp):
AAAAAAACAAAAAAAAAAC
Found at i:24083469 original size:27 final size:25
Alignment explanation
Indices: 24083400--24083500 Score: 71
Period size: 26 Copynumber: 3.8 Consensus size: 25
24083390 ATATTTTTAG
* *
24083400 ATTTATCTTATTTTAATTTTTTTATT
1 ATTTATCTGATTTT-TTTTTTTTATT
* *
24083426 AATTATCTG-TTAATTTTATTTTTATT
1 ATTTATCTGATT--TTTTTTTTTTATT
24083452 CATTTATCTGATTTTTTTTTTATTATCT
1 -ATTTATCTGATTTTTTTTTT-TTAT-T
*
24083480 GA-TTATTATGATTTTTTTTTT
1 -ATTTA-TCTGATTTTTTTTTT
24083501 AGGGCTGTGA
Statistics
Matches: 60, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
25 2 0.03
26 23 0.38
27 17 0.28
28 18 0.30
ACGTcount: A:0.22, C:0.05, G:0.04, T:0.69
Consensus pattern (25 bp):
ATTTATCTGATTTTTTTTTTTTATT
Found at i:24083471 original size:24 final size:24
Alignment explanation
Indices: 24083416--24083476 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
24083406 CTTATTTTAA
24083416 TTTTTTTATTAATTATCTGTTAATTT
1 TTTTTTTATTAATTATCTG-T-ATTT
* *
24083442 TATTTTTATTCATTTATCTG-ATTT
1 TTTTTTTATT-AATTATCTGTATTT
24083466 TTTTTTTATTA
1 TTTTTTTATTA
24083477 TCTGATTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
23 1 0.03
24 13 0.42
26 9 0.29
27 8 0.26
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.70
Consensus pattern (24 bp):
TTTTTTTATTAATTATCTGTATTT
Found at i:24083987 original size:20 final size:20
Alignment explanation
Indices: 24083962--24084000 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
24083952 TTTCGATAAA
*
24083962 AAAACCCAGATTCCGGTGAC
1 AAAACCCAGAATCCGGTGAC
24083982 AAAACCCAGAATCCGGTGA
1 AAAACCCAGAATCCGGTGA
24084001 ATCTTCAACC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.28, G:0.21, T:0.13
Consensus pattern (20 bp):
AAAACCCAGAATCCGGTGAC
Found at i:24084350 original size:27 final size:28
Alignment explanation
Indices: 24084314--24084367 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
24084304 TTAATATTCT
24084314 TTTTATCTTTAT-TTTATTTATATTTTTG
1 TTTTATCTTT-TCTTTATTTATATTTTTG
*
24084342 TTTTA-CTTTTCTTTATTTTTATTTTT
1 TTTTATCTTTTCTTTATTTATATTTTT
24084368 ATTTATTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 1 0.04
27 18 0.75
28 5 0.21
ACGTcount: A:0.15, C:0.06, G:0.02, T:0.78
Consensus pattern (28 bp):
TTTTATCTTTTCTTTATTTATATTTTTG
Found at i:24084379 original size:11 final size:12
Alignment explanation
Indices: 24084313--24084381 Score: 54
Period size: 11 Copynumber: 5.7 Consensus size: 12
24084303 TTTAATATTC
24084313 TTTTTATCTT-TA
1 TTTTTAT-TTATA
24084325 -TTTTATTTATA
1 TTTTTATTTATA
* *
24084336 TTTTTGTTTTACTT
1 TTTTT-ATTTA-TA
*
24084350 TTCTTTATTTTTA
1 TT-TTTATTTATA
24084363 TTTTTATTTAT-
1 TTTTTATTTATA
24084374 TTTTTATT
1 TTTTTATT
24084382 ATTCTATTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 11
0.73 0.10 0.17
Matches are distributed among these distances:
10 2 0.04
11 16 0.35
12 12 0.26
13 7 0.15
14 6 0.13
15 3 0.07
ACGTcount: A:0.16, C:0.04, G:0.01, T:0.78
Consensus pattern (12 bp):
TTTTTATTTATA
Found at i:24084560 original size:116 final size:120
Alignment explanation
Indices: 24084401--24084632 Score: 373
Period size: 116 Copynumber: 2.0 Consensus size: 120
24084391 TCTTTAAATA
*
24084401 AAAATCAAAATTTCCAAAAAAAATATTTTTAGTGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
1 AAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
* *
24084466 T-AAA-TTTC-AAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
66 TCAAATTTTCAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
*
24084518 AAAATCAAAATTTCC-AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAA
1 AAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
* *
24084582 TCAAATTTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
66 TCAAATTTTC-AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
24084633 TCCTACACGA
Statistics
Matches: 105, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
116 48 0.46
117 18 0.17
118 4 0.04
120 35 0.33
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.34
Consensus pattern (120 bp):
AAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
TCAAATTTTCAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
Found at i:24084567 original size:60 final size:60
Alignment explanation
Indices: 24084401--24084632 Score: 339
Period size: 60 Copynumber: 3.9 Consensus size: 60
24084391 TCTTTAAATA
* *
24084401 AAAATCAAAATTTCCAAAAAAAATATTTTTAGTGAAAAGTTGAAAGTATCAATTTTCCTTA
1 AAAATCAAAATTTCC-AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTG
***
24084462 AAAAT--AAATTT-C-AAAAAGGGTTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTTG
1 AAAATCAAAATTTCCAAAAAAATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTG
24084518 AAAATCAAAATTTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTG
1 AAAATCAAAATTTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTG
* * *
24084578 AAAATCAAATTTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
1 AAAATCAAAATTTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTT
24084633 TCCTACACGA
Statistics
Matches: 154, Mismatches: 11, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
55 1 0.01
56 42 0.27
58 7 0.05
59 7 0.05
60 91 0.59
61 6 0.04
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.34
Consensus pattern (60 bp):
AAAATCAAAATTTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTG
Found at i:24094116 original size:10 final size:10
Alignment explanation
Indices: 24094103--24094130 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
24094093 TTTTACAATT
24094103 TTTTTTTTCA
1 TTTTTTTTCA
24094113 TTTTTTTTCA
1 TTTTTTTTCA
24094123 TTTTTTTT
1 TTTTTTTT
24094131 ACTGTGTCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.86
Consensus pattern (10 bp):
TTTTTTTTCA
Found at i:24094618 original size:18 final size:18
Alignment explanation
Indices: 24094595--24094632 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
24094585 AGAGAATTCC
*
24094595 ATTGTAAAGCCGTATGCA
1 ATTGTAAAGCCATATGCA
24094613 ATTGTAAAGCCATATGCA
1 ATTGTAAAGCCATATGCA
24094631 AT
1 AT
24094633 GTGCAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (18 bp):
ATTGTAAAGCCATATGCA
Found at i:24095105 original size:10 final size:10
Alignment explanation
Indices: 24095090--24095190 Score: 64
Period size: 10 Copynumber: 10.0 Consensus size: 10
24095080 TAAATTTTAA
24095090 AAAAAATTTT
1 AAAAAATTTT
*
24095100 AAAAAA-TTC
1 AAAAAATTTT
*
24095109 ACAAAAA-TTC
1 A-AAAAATTTT
*
24095119 AAAAAGATTCT
1 AAAAA-ATTTT
*
24095130 AAAAATTTTT
1 AAAAAATTTT
*
24095140 AAAATATTTT
1 AAAAAATTTT
* *
24095150 TAAAAACTTT
1 AAAAAATTTT
* *
24095160 GAAATATTTT
1 AAAAAATTTT
24095170 -AAAAATTATAT
1 AAAAAATT-T-T
24095181 AAAAAATTTT
1 AAAAAATTTT
24095191 TTAGAAATTT
Statistics
Matches: 71, Mismatches: 14, Indels: 12
0.73 0.14 0.12
Matches are distributed among these distances:
9 13 0.18
10 43 0.61
11 8 0.11
12 7 0.10
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (10 bp):
AAAAAATTTT
Found at i:24095105 original size:11 final size:12
Alignment explanation
Indices: 24095081--24095105 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
24095071 TATTAAAGAT
24095081 AAATTTTAAAAA
1 AAATTTTAAAAA
24095093 AAATTTTAAAAA
1 AAATTTTAAAAA
24095105 A
1 A
24095106 TTCACAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAATTTTAAAAA
Found at i:24095148 original size:11 final size:10
Alignment explanation
Indices: 24095129--24095202 Score: 60
Period size: 10 Copynumber: 7.1 Consensus size: 10
24095119 AAAAAGATTC
24095129 TAAAAATTTT
1 TAAAAATTTT
24095139 TAAAATATTTT
1 TAAAA-ATTTT
*
24095150 TAAAAACTTT
1 TAAAAATTTT
* *
24095160 GAAATA-TTT
1 TAAAAATTTT
24095169 TAAAAATTATAT
1 TAAAAATT-T-T
*
24095181 AAAAAATTTTT
1 TAAAAA-TTTT
*
24095192 TAGAAATTTT
1 TAAAAATTTT
24095202 T
1 T
24095203 TATTAATATT
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
9 7 0.14
10 19 0.37
11 16 0.31
12 7 0.14
13 2 0.04
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (10 bp):
TAAAAATTTT
Found at i:24097322 original size:49 final size:49
Alignment explanation
Indices: 24097225--24097330 Score: 117
Period size: 50 Copynumber: 2.2 Consensus size: 49
24097215 ATCCTCGAAA
* * * *
24097225 TTTA-TTTTTATTTCTAAATTTTTTATCATTTGGGCCAATTTAAAAATT
1 TTTATTTTTTATTTCTAAATTTTTCACCATTTAGACCAATTTAAAAATT
* * *
24097273 TTTATTTTTTAATTTCTAAATTTTTCACCATTTAGATCTATTT-AGAATT
1 TTTATTTTTT-ATTTCTAAATTTTTCACCATTTAGACCAATTTAAAAATT
*
24097322 TTTGTTTTT
1 TTTATTTTT
24097331 ATCTTTGGAA
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
48 4 0.08
49 18 0.38
50 26 0.54
ACGTcount: A:0.26, C:0.08, G:0.06, T:0.59
Consensus pattern (49 bp):
TTTATTTTTTATTTCTAAATTTTTCACCATTTAGACCAATTTAAAAATT
Found at i:24097829 original size:24 final size:25
Alignment explanation
Indices: 24097802--24097850 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
24097792 TTCTCACTTA
* *
24097802 TGAATTTTATAAAAA-TTTATCATT
1 TGAAATTTATAAAAACTCTATCATT
*
24097826 TGAAATTTCTAAAAACTCTATCATT
1 TGAAATTTATAAAAACTCTATCATT
24097851 GGATAATTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.41, C:0.10, G:0.04, T:0.45
Consensus pattern (25 bp):
TGAAATTTATAAAAACTCTATCATT
Found at i:24098458 original size:10 final size:10
Alignment explanation
Indices: 24098443--24098468 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
24098433 TTCTTATCAG
24098443 AATTTGTCAA
1 AATTTGTCAA
24098453 AATTTGTCAA
1 AATTTGTCAA
24098463 AATTTG
1 AATTTG
24098469 GGAAATTTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.38, C:0.08, G:0.12, T:0.42
Consensus pattern (10 bp):
AATTTGTCAA
Found at i:24099157 original size:43 final size:43
Alignment explanation
Indices: 24098919--24099331 Score: 233
Period size: 44 Copynumber: 9.4 Consensus size: 43
24098909 CTAAACAAAA
* * *
24098919 GCTCCACAACTTTTAAGAAATAAATAAAGC-TCATTTAAGTCA-AG
1 GCTCAACAAC-TTTAAAAAATAAATAAGGCTTC-TTTAAGT-AGAG
* * * ** *
24098963 GCTCAACCACTTTTGAAACATAAATAAAACTCCTTTAAGTAGAG
1 GCTCAACAAC-TTTAAAAAATAAATAAGGCTTCTTTAAGTAGAG
* * * ** * *
24099007 GTTCAACAACTTTGAAAACTAAATAAAACTCCTCTT-AGTGGAG
1 GCTCAACAACTTTAAAAAATAAATAAGGCTTCT-TTAAGTAGAG
* *
24099050 ACTTAACAACTTTAAAAAAAATAAATAAGGCTAT-TTTAAGTAGAG
1 GCTCAACAACTTT--AAAAAATAAATAAGGCT-TCTTTAAGTAGAG
* * ** * *
24099095 GTTTAATGACTTTTGAAAAACAAATAAGGCTTCTTTAAGTAGAG
1 GCTCAACAAC-TTTAAAAAATAAATAAGGCTTCTTTAAGTAGAG
* * * * **
24099139 GCTCAACAACTTCAAAAAAT-AACAAGGCTCCTCTAAACAGAG
1 GCTCAACAACTTTAAAAAATAAATAAGGCTTCTTTAAGTAGAG
* ** * * * * * *
24099181 GTTCAATGATTTTAGCAAAGTAAATAAGACTTCTATAAGCAGAG
1 GCTCAACAACTTTA-AAAAATAAATAAGGCTTCTTTAAGTAGAG
* * * * **
24099225 GCTTAACAACTTTGAAAAATAAATAAGGTTTCTCTAAACAGAG
1 GCTCAACAACTTTAAAAAATAAATAAGGCTTCTTTAAGTAGAG
* * * *
24099268 GCTTAACAACTTTGAAAAGATAAATAAGGCTTCTCTAAATAGAG
1 GCTCAACAACTTT-AAAAAATAAATAAGGCTTCTTTAAGTAGAG
*
24099312 GCTCAACGACTTTATAAAAA
1 GCTCAACAACTTTA-AAAAA
24099332 GCTTTTCGAC
Statistics
Matches: 286, Mismatches: 70, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
42 26 0.09
43 87 0.30
44 143 0.50
45 27 0.09
46 3 0.01
ACGTcount: A:0.43, C:0.16, G:0.14, T:0.27
Consensus pattern (43 bp):
GCTCAACAACTTTAAAAAATAAATAAGGCTTCTTTAAGTAGAG
Found at i:24099301 original size:87 final size:86
Alignment explanation
Indices: 24099003--24099331 Score: 243
Period size: 86 Copynumber: 3.8 Consensus size: 86
24098993 TCCTTTAAGT
* ** * * * * * *
24099003 AGAGGTTCAACAACTTTGAAAA-CTAAATAAAACTCCTCTTAGTGGAGACTTAACAACTTTAAAA
1 AGAGGTTCAACAACTTTGAAAAGATAAATAAGGCTTCTATAAGTAGAGGCTCAACAACTTT--AA
* ** * **
24099067 AAAATAAATAAGGCTATTTTAAGT
64 AAAAT-AACAAGGCTCCTCTAAAC
* ** * * *
24099091 AGAGGTTTAATGACTTTTGAAAA-ACAAATAAGGCTTCTTTAAGTAGAGGCTCAACAACTTCAAA
1 AGAGGTTCAACAAC-TTTGAAAAGATAAATAAGGCTTCTATAAGTAGAGGCTCAACAACTTTAAA
24099155 AAATAACAAGGCTCCTCTAAAC
65 AAATAACAAGGCTCCTCTAAAC
** * * * * * *
24099177 AGAGGTTCAATGATTTTAGCAAAG-TAAATAAGACTTCTATAAGCAGAGGCTTAACAACTTTGAA
1 AGAGGTTCAACAACTTT-GAAAAGATAAATAAGGCTTCTATAAGTAGAGGCTCAACAACTTTAAA
* * *
24099241 AAATAAATAAGGTTTCTCTAAAC
65 AAAT-AACAAGGCTCCTCTAAAC
* * *
24099264 AGAGGCTT-AACAACTTTGAAAAGATAAATAAGGCTTCTCTAAATAGAGGCTCAACGACTTTATA
1 AGAGG-TTCAACAACTTTGAAAAGATAAATAAGGCTTCTATAAGTAGAGGCTCAACAACTTTA-A
24099328 AAAA
64 AAAA
24099332 GCTTTTCGAC
Statistics
Matches: 190, Mismatches: 44, Indels: 14
0.77 0.18 0.06
Matches are distributed among these distances:
85 3 0.02
86 70 0.37
87 64 0.34
88 18 0.09
89 35 0.18
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (86 bp):
AGAGGTTCAACAACTTTGAAAAGATAAATAAGGCTTCTATAAGTAGAGGCTCAACAACTTTAAAA
AATAACAAGGCTCCTCTAAAC
Found at i:24100653 original size:7 final size:7
Alignment explanation
Indices: 24100631--24100675 Score: 67
Period size: 7 Copynumber: 6.6 Consensus size: 7
24100621 TTTTCTCTTC
24100631 TTTTATA
1 TTTTATA
24100638 TTTT-T-
1 TTTTATA
24100643 TTTTATA
1 TTTTATA
24100650 TTTTTATA
1 -TTTTATA
24100658 TTTTATA
1 TTTTATA
24100665 TTTTATA
1 TTTTATA
24100672 TTTT
1 TTTT
24100676 TTCATCCATT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
5 4 0.11
6 2 0.06
7 22 0.63
8 7 0.20
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (7 bp):
TTTTATA
Found at i:24111709 original size:16 final size:14
Alignment explanation
Indices: 24111678--24111751 Score: 64
Period size: 13 Copynumber: 5.3 Consensus size: 14
24111668 AACGAAAAAT
24111678 AATAAAATATATAAA
1 AATAAAA-ATATAAA
*
24111693 AGATATAAAAGATAAA
1 A-ATA-AAAATATAAA
* *
24111709 AATAAAAACAT-AT
1 AATAAAAATATAAA
*
24111722 AA-AAACATATAAA
1 AATAAAAATATAAA
24111735 AAT-AAAATATAAA
1 AATAAAAATATAAA
24111748 AATA
1 AATA
24111752 TATAAAACTA
Statistics
Matches: 47, Mismatches: 7, Indels: 11
0.72 0.11 0.17
Matches are distributed among these distances:
12 6 0.13
13 18 0.38
14 6 0.13
15 4 0.09
16 10 0.21
17 3 0.06
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.22
Consensus pattern (14 bp):
AATAAAAATATAAA
Found at i:24111725 original size:10 final size:10
Alignment explanation
Indices: 24111710--24111793 Score: 57
Period size: 10 Copynumber: 8.4 Consensus size: 10
24111700 AAAGATAAAA
24111710 ATAAAAACAT
1 ATAAAAACAT
24111720 ATAAAAACAT
1 ATAAAAACAT
* *
24111730 ATAAAAATAAA
1 ATAAAAA-CAT
24111741 ATATAAAA-AT
1 ATA-AAAACAT
24111751 ATATAAAAC-T
1 ATA-AAAACAT
**
24111761 ATTTAAA-AT
1 ATAAAAACAT
*
24111770 ATTAAAACAT
1 ATAAAAACAT
* *
24111780 ATATAAATAT
1 ATAAAAACAT
24111790 ATAA
1 ATAA
24111794 TAAAAGAAAG
Statistics
Matches: 59, Mismatches: 10, Indels: 10
0.75 0.13 0.13
Matches are distributed among these distances:
9 10 0.17
10 41 0.69
11 4 0.07
12 4 0.07
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.29
Consensus pattern (10 bp):
ATAAAAACAT
Found at i:24111768 original size:33 final size:33
Alignment explanation
Indices: 24111673--24111793 Score: 122
Period size: 33 Copynumber: 3.6 Consensus size: 33
24111663 TATTAAACGA
*
24111673 AAAATA-ATAAAATATATAAAAGATATAAAAGAT
1 AAAATATA-AAAATATATAAAACATATAAAAGAT
*
24111706 AAAA-ATAAAAACATATAAAAACATATAAAA-AT
1 AAAATATAAAAATATAT-AAAACATATAAAAGAT
* *
24111738 AAAATATAAAAATATATAAAACTATTTAAAATATT
1 AAAATATAAAAATATATAAAAC-ATATAAAAGA-T
*
24111773 AAAACATATATAAATATATAA
1 -AAA-ATATAAAAATATATAA
24111794 TAAAAGAAAG
Statistics
Matches: 75, Mismatches: 5, Indels: 12
0.82 0.05 0.13
Matches are distributed among these distances:
32 20 0.27
33 35 0.47
34 1 0.01
35 1 0.01
36 3 0.04
37 15 0.20
ACGTcount: A:0.69, C:0.03, G:0.02, T:0.26
Consensus pattern (33 bp):
AAAATATAAAAATATATAAAACATATAAAAGAT
Found at i:24111770 original size:19 final size:18
Alignment explanation
Indices: 24111679--24111793 Score: 95
Period size: 18 Copynumber: 6.7 Consensus size: 18
24111669 ACGAAAAATA
*
24111679 ATAAAATATATAAAAGAT
1 ATAAAATATATAAAACAT
*
24111697 AT-AAA-AGATAAAA-AT
1 ATAAAATATATAAAACAT
*
24111712 A-AAAACATATAAAAACAT
1 ATAAAATATAT-AAAACAT
*
24111730 AT-AAA-A-ATAAAATAT
1 ATAAAATATATAAAACAT
24111745 A-AAAATATATAAAACTAT
1 ATAAAATATATAAAAC-AT
*
24111763 TTAAAATAT-TAAAACAT
1 ATAAAATATATAAAACAT
24111780 ATATAAATATATAA
1 ATA-AAATATATAA
24111794 TAAAAGAAAG
Statistics
Matches: 79, Mismatches: 6, Indels: 23
0.73 0.06 0.21
Matches are distributed among these distances:
15 16 0.20
16 13 0.16
17 18 0.23
18 22 0.28
19 10 0.13
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (18 bp):
ATAAAATATATAAAACAT
Found at i:24111776 original size:8 final size:8
Alignment explanation
Indices: 24111673--24111776 Score: 52
Period size: 8 Copynumber: 12.5 Consensus size: 8
24111663 TATTAAACGA
*
24111673 AAAATAAT
1 AAAATATT
24111681 AAAATATAT
1 AAAATAT-T
*
24111690 AAAAGATAT
1 AAAATAT-T
* *
24111699 AAAAGATA
1 AAAATATT
*
24111707 AAAATA-A
1 AAAATATT
*
24111714 AAACATATA
1 AAA-ATATT
*
24111723 AAAACATAT
1 AAAATAT-T
24111732 AAAA-A-T
1 AAAATATT
*
24111738 AAAATATA
1 AAAATATT
24111746 AAAATATAT
1 AAAATAT-T
24111755 AAAACTATTT
1 AAAA-TA-TT
24111765 AAAATATT
1 AAAATATT
24111773 AAAA
1 AAAA
24111777 CATATATAAA
Statistics
Matches: 79, Mismatches: 8, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
6 5 0.06
7 5 0.06
8 31 0.39
9 30 0.38
10 7 0.09
11 1 0.01
ACGTcount: A:0.70, C:0.03, G:0.02, T:0.25
Consensus pattern (8 bp):
AAAATATT
Found at i:24113795 original size:3 final size:3
Alignment explanation
Indices: 24113787--24113811 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
24113777 CAAAACAAAC
24113787 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
24113812 GTAATAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:24114148 original size:20 final size:19
Alignment explanation
Indices: 24114110--24114166 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 19
24114100 AACCCCAAAA
*
24114110 GTGAAACCTTAAACCCTAG
1 GTGAAACCCTAAACCCTAG
*
24114129 GTGAAACCCAAAAGCCCTAG
1 GTGAAACCCTAAA-CCCTAG
*
24114149 GTAAAACCCTAAACCCTA
1 GTGAAACCCTAAACCCTA
24114167 AATATAATCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
19 16 0.48
20 17 0.52
ACGTcount: A:0.40, C:0.30, G:0.14, T:0.16
Consensus pattern (19 bp):
GTGAAACCCTAAACCCTAG
Found at i:24114213 original size:32 final size:31
Alignment explanation
Indices: 24114159--24114218 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
24114149 GTAAAACCCT
*
24114159 AAACCCTAAATATAATCATGAAACTCTAATTG
1 AAACCCTAAATAAAATCATGAAA-TCTAATTG
*
24114191 AAACCCTAAATAAAA-CTTTGAAATCTAA
1 AAACCCTAAATAAAATC-ATGAAATCTAA
24114219 ATCTACCTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
31 6 0.24
32 19 0.76
ACGTcount: A:0.50, C:0.18, G:0.05, T:0.27
Consensus pattern (31 bp):
AAACCCTAAATAAAATCATGAAATCTAATTG
Found at i:24118169 original size:3 final size:3
Alignment explanation
Indices: 24118148--24118212 Score: 82
Period size: 3 Copynumber: 22.3 Consensus size: 3
24118138 GTATGCAAGT
*
24118148 TAA TAA AAA GTAA -AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
24118193 TAA TAA -AA -AA TAA CAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA T
24118213 GATTATACCA
Statistics
Matches: 55, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
2 6 0.11
3 47 0.85
4 2 0.04
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:24126228 original size:11 final size:10
Alignment explanation
Indices: 24126198--24126241 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
24126188 GGCATTTGTT
*
24126198 AAAAAGAAGA
1 AAAAAGAAAA
24126208 AAAAAGAAAA
1 AAAAAGAAAA
*
24126218 AAAGAGAAAA
1 AAAAAGAAAA
*
24126228 AGAAGAGAAAA
1 A-AAAAGAAAA
24126239 AAA
1 AAA
24126242 CAAAAATGGA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
10 21 0.68
11 10 0.32
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (10 bp):
AAAAAGAAAA
Found at i:24126246 original size:19 final size:18
Alignment explanation
Indices: 24126198--24126247 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 18
24126188 GGCATTTGTT
24126198 AAAAAGA-AGAAAAAAGAA
1 AAAAAGACA-AAAAAAGAA
*
24126216 AAAAAGAGAAAAAGAAGAGA
1 AAAAAGACAAAAA-AAGA-A
24126236 AAAAA-ACAAAAA
1 AAAAAGACAAAAA
24126248 TGGAAAGATA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 11 0.39
19 11 0.39
20 6 0.21
ACGTcount: A:0.82, C:0.02, G:0.16, T:0.00
Consensus pattern (18 bp):
AAAAAGACAAAAAAAGAA
Found at i:24126775 original size:18 final size:18
Alignment explanation
Indices: 24126733--24126775 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
24126723 AACAACAACA
24126733 AAAAAAACCCAAAAAAAG
1 AAAAAAACCCAAAAAAAG
**
24126751 ACCAAAA-CCAAAAAAATG
1 AAAAAAACCCAAAAAAA-G
24126769 AAAAAAA
1 AAAAAAA
24126776 AAATTGCCTT
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.77, C:0.16, G:0.05, T:0.02
Consensus pattern (18 bp):
AAAAAAACCCAAAAAAAG
Found at i:24127145 original size:17 final size:17
Alignment explanation
Indices: 24127123--24127157 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
24127113 CATTAAACGA
24127123 AAAT-AATAATAATAAAT
1 AAATAAATAAT-ATAAAT
24127140 AAATAAATAATATAAAT
1 AAATAAATAATATAAAT
24127157 A
1 A
24127158 TATATAAGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
AAATAAATAATATAAAT
Found at i:24127218 original size:36 final size:32
Alignment explanation
Indices: 24127174--24127244 Score: 97
Period size: 34 Copynumber: 2.1 Consensus size: 32
24127164 AGATTAAAAT
24127174 ATAAAATATAAAAACATATAGAAAACATATATTAAA
1 ATAAAATAT-AAAA-ATATAGAAAAC-TAT-TTAAA
*
24127210 ATAAAATATAAAAATATATAAAACTATTTAAA
1 ATAAAATATAAAAATATAGAAAACTATTTAAA
24127242 ATA
1 ATA
24127245 TCAAAATATA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
32 8 0.24
33 3 0.09
34 10 0.29
35 4 0.12
36 9 0.26
ACGTcount: A:0.66, C:0.04, G:0.01, T:0.28
Consensus pattern (32 bp):
ATAAAATATAAAAATATAGAAAACTATTTAAA
Found at i:24129132 original size:18 final size:18
Alignment explanation
Indices: 24129048--24129158 Score: 72
Period size: 18 Copynumber: 6.3 Consensus size: 18
24129038 GCTCTTAATG
*
24129048 CATTTGAGGTGAAGGATA
1 CATTTGAGGTGGAGGATA
* *
24129066 TATTTGA---GGATGATA
1 CATTTGAGGTGGAGGATA
24129081 CATTT-ATGGTGG-GAGATA
1 CATTTGA-GGTGGAG-GATA
* **
24129099 CATTTCTA-GTAAAGGATA
1 CATTT-GAGGTGGAGGATA
24129117 CATTTGAGGTGGAGGATA
1 CATTTGAGGTGGAGGATA
** *
24129135 CATTTGAAATGGATGATA
1 CATTTGAGGTGGAGGATA
24129153 CATTTG
1 CATTTG
24129159 TGGTAGATAA
Statistics
Matches: 71, Mismatches: 13, Indels: 18
0.70 0.13 0.18
Matches are distributed among these distances:
14 1 0.01
15 10 0.14
17 1 0.01
18 57 0.80
19 1 0.01
20 1 0.01
ACGTcount: A:0.32, C:0.06, G:0.28, T:0.33
Consensus pattern (18 bp):
CATTTGAGGTGGAGGATA
Found at i:24129153 original size:36 final size:35
Alignment explanation
Indices: 24129048--24129158 Score: 95
Period size: 36 Copynumber: 3.2 Consensus size: 35
24129038 GCTCTTAATG
* *
24129048 CATTTGAGGTGAAGGATATATTTG-A-GGATGATA
1 CATTTGAGGTGGAGGATACATTTGAATGGATGATA
* * ** *
24129081 CATTT-ATGGTGG-GAGATACATTTCTAGTAAAGGATA
1 CATTTGA-GGTGGAG-GATACATTT-GAATGGATGATA
24129117 CATTTGAGGTGGAGGATACATTTGAAATGGATGATA
1 CATTTGAGGTGGAGGATACATTTG-AATGGATGATA
24129153 CATTTG
1 CATTTG
24129159 TGGTAGATAA
Statistics
Matches: 58, Mismatches: 12, Indels: 13
0.70 0.14 0.16
Matches are distributed among these distances:
32 2 0.03
33 17 0.29
36 37 0.64
37 2 0.03
ACGTcount: A:0.32, C:0.06, G:0.28, T:0.33
Consensus pattern (35 bp):
CATTTGAGGTGGAGGATACATTTGAATGGATGATA
Done.